##AnalysisProc	ID of the process that generated the VCF file
##Sample	Tumour sample name
##Normal	Normal sample name
##VariantID	ID of the Variant
##Chrom	Chromosome
##Pos	Position, the position of a sub or the position immediatly before an indel
##Ref	Reference sequence of the Variant
##Alt	Alternative sequence of the Variant
##Qual	VCF Quality field
##Filter	VCF Filter field
##Gene	Gene affected, according to the VD tag
##Transcript	Transcript affected, according to the VD tag
##RNA	Variant description at RNA level
##CDS	Variant description at CDS level
##Protein	Variant description at protein level
##Type	Variant type
##Effect	Summary variants of overall effect
##VCF Info Fields
##PC	Pindel call
##RS	Range start
##RE	Range end
##LEN	Length
##S1	S1
##S2	S2
##PA	Annotation on the positive strand
##NA	Annotation on the negative strand
##REP	Change repeat count with range
##PRV	Fraction of reads reporting the most prevalent change
##F017	Variant must not overlap with a simple repeat
##VD	Vagrent Default Annotation
##VW	Vagrent Most Deleterious Annotation
##GT-Norm	Genotype for the Normal
##PP-Norm	Pindel calls on the positive strand for the Normal
##NP-Norm	Pindel calls on the negative strand for the Normal
##PB-Norm	BWA calls on the positive strand for the Normal
##NB-Norm	BWA calls on the negative strand for the Normal
##PD-Norm	BWA mapped reads on the positive strand for the Normal
##ND-Norm	BWA mapped reads on the negative strand for the Normal
##PR-Norm	Total mapped reads on the positive strand for the Normal
##NR-Norm	Total mapped reads on the negative strand for the Normal
##PU-Norm	Unique calls on the positive strand for the Normal
##NU-Norm	Unique calls on the negative strand for the Normal
##GT-Tum	Genotype for the Tumour
##PP-Tum	Pindel calls on the positive strand for the Tumour
##NP-Tum	Pindel calls on the negative strand for the Tumour
##PB-Tum	BWA calls on the positive strand for the Tumour
##NB-Tum	BWA calls on the negative strand for the Tumour
##PD-Tum	BWA mapped reads on the positive strand for the Tumour
##ND-Tum	BWA mapped reads on the negative strand for the Tumour
##PR-Tum	Total mapped reads on the positive strand for the Tumour
##NR-Tum	Total mapped reads on the negative strand for the Tumour
##PU-Tum	Unique calls on the positive strand for the Tumour
##NU-Tum	Unique calls on the negative strand for the Tumour
##VCF Flag Fields
##FLG-F004	Tum medium read depth strand bias check: Calls In 8% Reads Bt Depth 10 And 200 (inclusive)
##FLG-F005	Tum high read depth strand bias check: Calls In 4% Reads > Depth 200
##FLG-F006	Small call excessive repeat check: Fail if Length <= 4 and Repeats > 9
##FLG-F010	Variant must not exist within the Unmatched Normal Panel
##FLG-F012	Germline: When length < 11 and depth > 9, fail if the variant is seen in both 20% of normal reads AND 20% of tumour reads in either pindel or bwa
##FLG-F018	Sufficient Depth: Pass if depth > 10
##FLG-F015	No normal calls
##FLG-F016	Verify indel condition
#AnalysisProc	Sample	Normal	VariantID	Chrom	Pos	Ref	Alt	Qual	Filter	Gene	Transcript	RNA	CDS	Protein	Type	Effect	PC	RS	RE	LEN	S1	S2	PA	NA	REP	PRV	F017	VD	VW	GT-Norm	PP-Norm	NP-Norm	PB-Norm	NB-Norm	PD-Norm	ND-Norm	PR-Norm	NR-Norm	PU-Norm	NU-Norm	GT-Tum	PP-Tum	NP-Tum	PB-Tum	NB-Tum	PD-Tum	ND-Tum	PR-Tum	NR-Tum	PU-Tum	NU-Tum	FLG-F004	FLG-F005	FLG-F006	FLG-F010	FLG-F012	FLG-F018	FLG-F015	FLG-F016
2577887	PD4075a	PD4075b	2664332069	1	5592152	CGAA	C	509	PASS	-	-	-	-	-	Del	-	D	5592152	5592160	3	28	482.741	-	-	2	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	3	6	3	6	20	22	20	22	3	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664348429	1	67536353	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	67536353	67536361	1	15	317.613	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	4	4	4	24	22	24	22	4	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664356574	1	97166081	TAG	T	480	PASS	-	-	-	-	-	Del	-	D	97166081	97166089	2	24	429.103	-	-	3	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	5	3	8	4	23	11	23	11	8	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664361958	1	117739754	TATTAAGATAAGTACA	T	261	PASS	VTCN1	CCDS894.1	r.?	-	-	Del	intronic	D	117739754	117739772	15	28	480.935	-	-	1	1	1	VTCN1|CCDS894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VTCN1|CCDS894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	6	3	5	28	17	28	18	3	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664363639	1	142804299	AT	A	525	PASS	-	-	-	-	-	Del	-	D	142804299	142804307	1	20	1019.12	-	-	7	1	1	-	-	./.	0	0	0	0	134	105	134	105	0	0	./.	19	0	22	0	191	151	191	151	22	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664364163	1	143275379	A	AT	310	PASS	-	-	-	-	-	Ins	-	I	143275379	143275380	1	24	635.226	-	-	0	1	1	-	-	./.	0	0	0	0	35	31	35	31	0	0	./.	1	11	1	15	81	105	81	106	1	15	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664366042	1	148537493	TG	T	342	PASS	-	-	-	-	-	Del	-	D	148537493	148537495	1	11	536.379	-	-	1	1	1	-	-	./.	0	0	0	0	33	32	33	32	0	0	./.	10	0	14	0	92	26	92	26	14	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664370327	1	162173024	AT	A	480	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Del	intronic	D	162173024	162173027	1	24	429.103	-	-	2	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	5	3	11	10	37	32	37	32	11	10	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664370823	1	163727963	GGGTGGGGGCTCCCCTGCCACATGTAGCTATCAGGTGGCAGGGGAGCCCCCACCCCCAGCCAAGGGA	G	464	PASS	-	-	-	-	-	Del	-	D	163727963	163728035	66	77	856.4	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	10	6	0	0	9	22	19	28	10	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664446602	11	36722482	TG	T	749	PASS	-	-	-	-	-	Del	-	D	36722482	36722486	1	56	700.874	-	-	3	1	1	-	-	./.	0	0	0	0	23	9	23	9	0	0	./.	7	6	9	6	23	21	23	21	9	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664461918	11	97337235	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	97337235	97337239	2	12	265.954	-	-	1	1	-	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	2	24	32	24	32	3	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664472945	12	1886536	TA	T	300	PASS	ADIPOR2	CCDS8511.1	r.?	-	-	Del	intronic	D	1886536	1886538	1	6	268.085	-	-	1	1	-	ADIPOR2|CCDS8511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADIPOR2|CCDS8511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	23	6	23	0	0	./.	0	5	0	12	27	36	27	36	0	12	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664488852	12	56589014	TTGCAGTGAGCCGTGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTTTGTCTCAAAAAAAAAATTAGTCTCACTTTGTCGCCCAGGCTGGAG	T	261	PASS	-	-	-	-	-	Del	-	D	56589014	56589123	101	30	484.72	-	-	1	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	5	4	0	0	13	17	18	21	5	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664493086	12	71124582	GGA	G	300	PASS	PTPRR	CCDS8998.1	r.?	-	-	Del	intronic	D	71124582	71124599	2	12	268.687	-	-	8	1	1	PTPRR|CCDS8998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRR|CCDS8998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	6	21	6	0	0	./.	3	2	4	2	26	23	26	23	4	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664498568	12	90551577	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	90551577	90551580	2	6	267.483	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	5	0	8	0	33	23	33	23	8	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664502653	12	102866196	TA	T	300	PASS	IGF1	CCDS44961.1	r.?	-	-	Del	intronic	D	102866196	102866206	1	6	269.289	-	-	9	1	1	IGF1|CCDS44961.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF1|CCDS44961.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	0	5	0	6	23	25	23	25	0	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664521523	13	48577696	A	AC	300	PASS	SUCLA2	CCDS9406.1	r.?	-	-	Ins	upstream	I	48577696	48577697	1	12	265.321	-	-	0	1	1	SUCLA2|CCDS9406.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SUCLA2|CCDS9406.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	3	2	18	23	19	23	3	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664526596	13	64932140	CA	C	540	PASS	-	-	-	-	-	Del	-	D	64932140	64932150	1	24	483.237	-	-	9	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	2	7	8	13	18	36	18	36	8	13	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664530491	13	77199802	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	77199802	77199805	1	12	266.525	-	-	2	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	2	3	2	3	24	34	25	34	2	3	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664533363	13	87064503	CT	C	360	PASS	-	-	-	-	-	Del	-	D	87064503	87064505	1	15	323.563	-	-	1	1	1	-	-	./.	0	0	0	0	12	25	12	25	0	0	./.	4	2	5	4	21	29	21	29	5	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664550411	14	48080700	CA	C	569	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	48080700	48080709	1	36	539.801	-	-	8	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	5	5	7	9	28	28	28	28	7	9	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664583137	15	70300664	CAAT	C	654	PASS	-	-	-	-	-	Del	-	D	70300664	70300672	3	63	757.885	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	8	6	8	8	20	26	20	26	8	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664596793	16	11458753	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	11458753	11458770	2	12	268.92	-	-	8	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	3	2	40	52	40	52	3	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664599055	16	17313157	AAG	A	300	PASS	XYLT1	CCDS10569.1	r.?	-	-	Del	intronic	D	17313157	17313161	2	6	267.114	-	-	1	1	-	XYLT1|CCDS10569.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XYLT1|CCDS10569.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	0	4	0	60	38	60	38	7	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664600035	16	19526405	AAG	A	329	PASS	GDE1	CCDS10578.1	r.?	-	-	Del	intronic	D	19526405	19526409	2	7	318.128	-	-	1	1	1	GDE1|CCDS10578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDE1|CCDS10578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	8	22	8	0	0	./.	6	0	7	0	48	38	48	38	7	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664600408	16	20660867	TTC	T	300	PASS	ACSM1	CCDS10587.1	r.?	-	-	Del	intronic	D	20660867	20660885	2	10	270.124	-	-	8	1	1	ACSM1|CCDS10587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACSM1|CCDS10587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	1	5	1	56	50	56	50	5	1	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664602075	16	25190270	TC	T	420	PASS	LCMT1	CCDS45445.1	r.?	-	-	Del	downstream	D	25190270	25190272	1	8	368.54	-	-	1	1	-	LCMT1|CCDS45445.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LCMT1|CCDS45445.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	9	13	9	0	0	./.	7	0	15	0	38	38	38	38	15	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664602250	16	25524786	CT	C	720	PASS	-	-	-	-	-	Del	-	D	25524786	25524788	1	49	648.297	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	6	7	10	45	57	45	57	7	10	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664602725	16	26812420	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	26812420	26812438	2	12	270.124	-	-	8	1	-	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	2	5	3	59	48	59	48	5	3	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664604323	16	31251943	TG	T	300	PASS	-	-	-	-	-	Del	-	D	31251943	31251945	1	6	265.307	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	0	13	0	40	34	40	34	13	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664604686	16	32364304	T	TG	319	PASS	-	-	-	-	-	Ins	-	I	32364304	32364306	1	17	854.161	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	16	0	23	0	56	35	56	35	23	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664625335	17	25283620	T	TA	471	PASS	-	-	-	-	-	Ins	-	I	25283620	25283623	1	19	963.54	-	-	2	1	1	-	-	./.	0	0	0	0	41	76	42	76	0	0	./.	18	0	23	0	144	100	144	100	23	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664631803	17	46328023	TA	T	358	PASS	SKAP1	CCDS32674.1	r.?	-	-	Del	intronic	D	46328023	46328033	1	20	378.925	-	-	9	1	1	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	4	3	4	3	23	22	23	22	4	3	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664644820	18	6729673	T	TGCCCGGGGGCCCCTGACAGCCGCGTC	290	PASS	ARHGAP28	ENST00000400091	r.?	-	-	Ins	upstream	I	6729673	6729698	26	27	370.194	-	-	0	1	1	ARHGAP28|ENST00000400091|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ARHGAP28|ENST00000400091|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	3	12	3	0	0	./.	8	2	0	0	18	13	26	16	8	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664675027	19	31608724	TA	T	600	PASS	-	-	-	-	-	Del	-	D	31608724	31608726	1	35	541.826	-	-	1	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	6	4	13	6	33	27	33	27	13	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664685550	2	3728636	TG	T	389	PASS	ALLC	CCDS46223.1	r.?	-	-	Del	intronic	D	3728636	3728640	1	20	375.41	-	-	3	1	1	ALLC|CCDS46223.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALLC|CCDS46223.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	8	28	8	0	0	./.	4	3	5	5	35	27	35	27	5	5	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664701166	2	58946282	AT	A	480	PASS	-	-	-	-	-	Del	-	D	58946282	58946286	1	16	429.04	-	-	3	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	1	7	5	11	26	38	26	38	5	11	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664701886	2	61932598	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	61932598	61932599	1	48	636.335	-	-	0	1	1	-	-	./.	0	0	0	0	11	16	11	17	0	0	./.	5	7	7	7	26	22	26	22	7	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664702570	2	64539204	C	CG	660	PASS	-	-	-	-	-	Ins	-	I	64539204	64539206	1	40	583.307	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	7	4	8	32	22	33	22	4	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664706765	2	80875614	GT	G	449	PASS	CTNNA2	CCDS42703.2	r.4060delU	c.?	p.?	Del	3'UTR variant	D	80875614	80875622	1	24	428.438	-	-	7	1	1	CTNNA2|CCDS42703.2|r.4060delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CTNNA2|CCDS42703.2|r.4060delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	15	14	15	0	0	./.	3	5	4	8	31	19	31	19	4	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664706924	2	81577977	GA	G	683	PASS	-	-	-	-	-	Del	-	D	81577977	81577983	1	40	642.958	-	-	5	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	3	9	6	10	18	23	18	23	6	10	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664708721	2	87864512	AT	A	296	PASS	-	-	-	-	-	Del	-	D	87864512	87864522	1	9	429.04	-	-	9	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	8	0	9	0	48	23	48	23	9	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664711455	2	100338263	ATAAAT	A	420	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100338263	100338272	5	14	375.41	-	-	1	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	6	1	7	1	29	24	29	24	7	1	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664714963	2	114342983	A	ATGTT	290	PASS	MIR1302-3	ENST00000408128	r.?	-	-	Ins	upstream	I	114342983	114342986	4	20	512.218	-	-	0	1	1	MIR1302-3|ENST00000408128|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	MIR1302-3|ENST00000408128|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	37	24	37	24	0	0	./.	9	1	9	1	68	71	68	72	9	1	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664715699	2	116949868	GC	G	480	PASS	-	-	-	-	-	Del	-	D	116949868	116949870	1	25	429.04	-	-	1	1	1	-	-	./.	0	0	0	0	29	23	29	23	0	0	./.	4	4	5	8	32	23	32	23	5	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664728033	2	161161652	CT	C	660	PASS	RBMS1	CCDS2213.1	r.?	-	-	Del	intronic	D	161161652	161161654	1	22	588.124	-	-	1	1	1	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	10	3	16	15	46	15	46	3	16	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664731669	2	173837849	TTC	T	300	PASS	RAPGEF4	CCDS42775.1	r.?	-	-	Del	intronic	D	173837849	173837853	2	6	262.129	-	-	1	1	-	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	0	5	0	33	24	33	24	6	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664731769	2	174106502	CTT	C	480	PASS	ENSG00000091436	CCDS42777.1	r.?	-	-	Del	intronic	D	174106502	174106506	2	25	429.04	-	-	3	1	1	ENSG00000091436|CCDS42777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000091436|CCDS42777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	4	4	9	8	30	28	30	28	9	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664739882	2	203544629	ATAT	A	660	PASS	FAM117B	CCDS33362.1	r.?	-	-	Del	intronic	D	203544629	203544636	3	40	589.93	-	-	2	1	1	FAM117B|CCDS33362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM117B|CCDS33362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	4	7	7	9	22	21	22	21	7	9	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664744605	2	219777780	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	219777780	219777782	1	40	583.307	-	-	1	1	1	-	-	./.	0	0	0	0	23	13	23	14	0	0	./.	7	4	9	5	25	14	26	15	9	5	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664750829	2	241478711	TGGACCAGAGGAACGAACAACTCC	T	290	PASS	ANKMY1	CCDS2536.1	r.?	-	-	Del	intronic	D	241478711	241478740	23	35	535.698	-	-	1	1	1	ANKMY1|CCDS2536.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKMY1|CCDS2536.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	6	4	2	4	17	28	19	28	6	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664757974	20	22905940	TC	T	269	PASS	-	-	-	-	-	Del	-	D	22905940	22905942	1	6	268.03	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	5	0	5	0	26	25	26	25	5	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664769414	20	62694301	CG	C	420	PASS	TCEA2	CCDS13554.1	r.293delG	c.?	p.?	Del	5'UTR variant	D	62694301	62694305	1	20	378.252	-	-	3	1	1	TCEA2|CCDS13554.1|r.293delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	TCEA2|CCDS13554.1|r.293delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	2	13	2	13	0	0	./.	4	3	5	5	34	28	34	28	5	5	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664770978	21	10118738	CTGAT	C	294	PASS	-	-	-	-	-	Del	-	D	10118738	10118745	4	40	651.861	-	-	1	1	1	-	-	./.	0	0	0	0	106	62	106	62	0	0	./.	9	3	12	4	64	44	64	44	12	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664773185	21	15141132	A	AC	406	PASS	-	-	-	-	-	Ins	-	I	15141132	15141133	1	15	752.076	-	-	0	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	14	0	15	0	37	32	37	33	15	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664773904	21	17772061	TG	T	300	PASS	-	-	-	-	-	Del	-	D	17772061	17772063	1	6	269.201	-	-	1	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	0	5	0	6	30	37	30	37	0	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664784337	22	16971559	G	GT	250	PASS	-	-	-	-	-	Ins	-	I	16971559	16971560	1	15	754.241	-	-	0	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	14	0	19	0	32	23	32	24	19	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664784569	22	17392296	CCCAGATGTT	C	319	PASS	-	-	-	-	-	Del	-	D	17392296	17392318	9	13	653.717	-	-	2	1	1	-	-	./.	0	0	0	0	51	32	51	32	0	0	./.	12	0	12	0	68	17	68	17	12	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664788599	22	30018865	GA	G	389	PASS	NF2	CCDS13861.1	r.?	-	-	Del	intronic	D	30018865	30018867	1	20	381.335	-	-	1	1	1	NF2|CCDS13861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NF2|CCDS13861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	4	3	6	3	12	18	12	18	6	3	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664808925	3	49039422	ACT	A	360	PASS	P4HTM	CCDS2781.2	r.?	-	-	Del	intronic	D	49039422	49039428	2	15	320.502	-	-	2	1	1	P4HTM|CCDS2781.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	P4HTM|CCDS2781.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	2	5	4	23	24	23	24	5	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664834987	3	145195243	CTGTT	C	504	PASS	-	-	-	-	-	Del	-	D	145195243	145195250	4	28	482.86	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	6	3	8	4	20	16	20	16	8	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664841561	3	170045976	C	CTGTGCGTTTACAATCAGTGTTACTGATTGTAAA	290	PASS	-	-	-	-	-	Ins	-	I	170045976	170045977	33	27	336.694	-	-	0	1	1	-	-	./.	0	0	0	0	12	6	13	6	0	0	./.	2	8	0	0	18	17	19	19	2	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664844709	3	181921076	AAAC	A	420	PASS	-	-	-	-	-	Del	-	D	181921076	181921083	3	18	376.026	-	-	2	1	1	-	-	./.	0	0	0	0	6	21	6	21	0	0	./.	2	5	3	6	25	24	25	24	3	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664847678	3	191782019	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	191782019	191782026	1	24	418.907	-	-	6	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	3	5	8	11	24	50	24	50	8	11	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664858076	4	30030411	GATAA	G	300	PASS	ENSG00000237496	ENST00000424014	r.?	-	-	Del	intronic	D	30030411	30030424	4	12	267.732	-	-	3	1	1	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	5	6	29	24	29	24	5	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664858501	4	31699919	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	31699919	31699926	1	30	472.767	-	-	6	1	1	-	-	./.	0	0	0	0	24	10	25	10	0	0	./.	4	5	9	6	32	20	32	20	9	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664867504	4	61685933	GC	G	900	PASS	-	-	-	-	-	Del	-	D	61685933	61685937	1	72	805.003	-	-	3	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	8	7	12	7	24	24	24	24	12	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664870184	4	69877118	GTTTTATGTA	G	261	PASS	UGT2B11	CCDS3527.1	r.?	-	-	Del	intronic	D	69877118	69877129	9	30	483.002	-	-	1	1	1	UGT2B11|CCDS3527.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	UGT2B11|CCDS3527.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	5	4	6	8	25	40	25	40	6	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664876235	4	91591012	C	CT	480	PASS	FAM190A	CCDS47100.1	r.?	-	-	Ins	intronic	I	91591012	91591020	1	24	417.896	-	-	7	1	1	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	24	14	25	0	0	./.	3	5	4	6	37	41	38	41	4	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664877743	4	97928655	A	ATGTG	360	PASS	-	-	-	-	-	Ins	-	I	97928655	97928674	4	7	306.95	-	-	9	1	-	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	0	6	1	0	40	42	41	42	1	6	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664879233	4	104118879	CT	C	1169	PASS	CENPE	CCDS34042.1	r.?	-	-	Del	intronic	D	104118879	104118883	1	112	1072.73	-	-	3	1	1	CENPE|CCDS34042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPE|CCDS34042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	13	7	14	12	43	40	43	40	14	12	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664880253	4	108435160	ATAC	A	300	PASS	-	-	-	-	-	Del	-	D	108435160	108435170	3	12	268.334	-	-	3	1	1	-	-	./.	0	0	0	0	26	28	26	28	0	0	./.	2	3	3	3	32	30	32	30	3	3	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664887471	4	132054569	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	132054569	132054579	1	54	685.026	-	-	9	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	8	5	10	7	30	29	33	29	10	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664898368	4	167397700	AT	A	600	PASS	-	-	-	-	-	Del	-	D	167397700	167397709	1	35	536.668	-	-	8	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	4	6	4	7	31	41	31	41	4	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664923724	5	56167737	C	CA	600	PASS	MAP3K1	CCDS43318.1	r.1302_1303insa	c.1302_1303insA	p.I435fs*4	Ins	frameshift	I	56167737	56167739	1	20	531.351	-	-	1	1	1	MAP3K1|CCDS43318.1|r.1302_1303insa|c.1302_1303insA|p.I435fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MAP3K1|CCDS43318.1|r.1302_1303insa|c.1302_1303insA|p.I435fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	17	13	17	13	0	0	./.	9	1	10	2	42	22	42	23	10	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664923729	5	56183325	C	CA	1140	PASS	MAP3K1	CCDS43318.1	r.4235_4236insa	c.4235_4236insA	p.I1413fs*7	Ins	frameshift	I	56183325	56183328	1	110	1009.51	-	-	2	1	1	MAP3K1|CCDS43318.1|r.4235_4236insa|c.4235_4236insA|p.I1413fs*7|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MAP3K1|CCDS43318.1|r.4235_4236insa|c.4235_4236insA|p.I1413fs*7|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	16	11	16	11	0	0	./.	10	9	13	9	30	29	30	29	13	9	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664957600	6	6370701	GACAAA	G	300	PASS	-	-	-	-	-	Del	-	D	6370701	6370708	5	10	268.971	-	-	1	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	4	1	4	1	14	16	14	16	4	1	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664985377	6	98623997	GA	G	360	PASS	-	-	-	-	-	Del	-	D	98623997	98624002	1	15	321.561	-	-	4	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	2	4	4	7	21	30	21	30	4	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2664987016	6	104744707	CA	C	300	PASS	-	-	-	-	-	Del	-	D	104744707	104744712	1	10	268.369	-	-	4	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	4	1	5	4	23	19	23	19	5	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665028507	7	82729029	GTATC	G	685	PASS	PCLO	CCDS47630.1	r.?	-	-	Del	intronic	D	82729029	82729035	4	64	752.35	-	-	1	1	1	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	7	7	8	7	31	42	31	42	8	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665029555	7	85843515	TA	T	809	PASS	-	-	-	-	-	Del	-	D	85843515	85843520	1	55	753.555	-	-	4	1	1	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	10	4	12	5	20	17	20	17	12	5	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665032499	7	97711100	A	ATAAATATATATATGAATATAATATC	263	PASS	-	-	-	-	-	Ins	-	I	97711100	97711121	25	16	310.191	-	-	0	1	-	-	-	./.	0	0	0	0	12	10	13	10	0	0	./.	1	7	0	0	14	13	14	13	1	7	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665041993	7	131841638	GC	G	629	PASS	PLXNA4	CCDS43646.1	r.?	-	-	Del	intronic	D	131841638	131841641	1	40	592.079	-	-	2	1	1	PLXNA4|CCDS43646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA4|CCDS43646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	7	4	7	5	23	18	23	18	7	5	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665063833	8	53783037	TC	T	360	PASS	-	-	-	-	-	Del	-	D	53783037	53783039	1	7	312.217	-	-	1	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	6	0	10	0	51	44	51	44	10	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665069613	8	72343151	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	72343151	72343156	2	6	268.108	-	-	2	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	5	0	7	0	60	49	60	49	7	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665069972	8	73218440	TTGA	T	1744	PASS	-	-	-	-	-	Del	-	D	73218440	73218446	3	266	1665.4	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	13	18	22	23	52	49	52	49	22	23	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665070520	8	74824404	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	74824404	74824406	1	16	316.431	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	3	3	3	4	44	29	44	31	3	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665071665	8	78307203	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	78307203	78307205	1	6	262.087	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	5	0	14	0	55	53	55	53	14	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665072799	8	81964380	AG	A	269	PASS	PAG1	CCDS6227.1	r.?	-	-	Del	intronic	D	81964380	81964382	1	6	254.26	-	-	1	1	1	PAG1|CCDS6227.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAG1|CCDS6227.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	5	0	11	0	54	45	54	45	11	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665076095	8	92739334	GA	G	420	PASS	-	-	-	-	-	Del	-	D	92739334	92739339	1	20	374.99	-	-	4	1	1	-	-	./.	0	0	0	0	16	25	16	25	0	0	./.	4	3	5	4	44	63	44	63	5	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665079495	8	102698421	GTTAT	G	480	PASS	NCALD	CCDS6292.1	r.?	-	-	Del	downstream	D	102698421	102698432	4	21	429.333	-	-	2	1	1	NCALD|CCDS6292.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	NCALD|CCDS6292.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	18	9	18	9	0	0	./.	2	6	3	9	49	53	49	53	3	9	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665082793	8	112304194	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	112304194	112304196	1	12	265.699	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	16	0	0	./.	2	3	2	3	39	47	41	47	2	3	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665087218	8	124529342	AAC	A	420	PASS	FBXO32	CCDS6345.1	r.?	-	-	Del	intronic	D	124529342	124529346	2	18	376.194	-	-	1	1	1	FBXO32|CCDS6345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXO32|CCDS6345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	5	2	6	2	56	30	56	30	6	2	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665090532	8	134727820	TG	T	269	PASS	-	-	-	-	-	Del	-	D	134727820	134727822	1	6	247.036	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	0	11	0	65	15	65	15	11	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665090592	8	134997574	G	GT	1380	PASS	-	-	-	-	-	Ins	-	I	134997574	134997580	1	154	1219.81	-	-	5	1	1	-	-	./.	0	0	0	0	8	18	8	19	0	0	./.	13	10	17	18	42	43	43	43	17	18	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665097854	9	12274280	T	TAC	300	PASS	-	-	-	-	-	Ins	-	I	12274280	12274294	2	10	263.917	-	-	6	1	-	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	1	4	3	8	26	29	27	29	3	8	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665098817	9	15769452	AC	A	720	PASS	C9orf93	CCDS6481.1	r.?	-	-	Del	intronic	D	15769452	15769454	1	49	647.248	-	-	1	1	1	C9orf93|CCDS6481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf93|CCDS6481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	30	9	30	0	0	./.	6	6	9	9	22	25	22	25	9	9	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665099908	9	19497097	C	CAAA	449	PASS	-	-	-	-	-	Ins	-	I	19497097	19497099	3	24	417.451	-	-	1	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	5	3	5	12	16	12	16	3	5	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665102392	9	29379399	GT	G	300	PASS	-	-	-	-	-	Del	-	D	29379399	29379401	1	6	268.131	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	0	5	0	27	14	27	14	5	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665107021	9	68403193	GAA	G	476	PASS	-	-	-	-	-	Del	-	D	68403193	68403198	2	14	699.429	-	-	4	1	1	-	-	./.	0	0	0	0	212	136	212	136	0	0	./.	13	0	16	0	186	121	186	121	16	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665107836	9	68729126	ACT	A	333	PASS	-	-	-	-	-	Del	-	D	68729126	68729133	2	10	485.887	-	-	3	1	1	-	-	./.	0	0	0	0	153	132	153	132	0	0	./.	0	9	0	12	139	217	139	217	0	12	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665108007	9	69067554	TG	T	256	PASS	-	-	-	-	-	Del	-	D	69067554	69067559	1	11	539.875	-	-	4	1	1	-	-	./.	0	0	0	0	22	37	22	37	0	0	./.	10	0	10	0	59	16	59	16	10	0	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665144350	X	108845755	TA	T	420	PASS	-	-	-	-	-	Del	-	D	108845755	108845759	1	20	377.782	-	-	3	1	1	-	-	./.	0	0	0	0	26	15	26	15	0	0	./.	4	3	5	4	25	20	25	20	5	4	1	1	1	1	1	1	1	1
2577887	PD4075a	PD4075b	2665145793	X	117081056	AT	A	840	PASS	KLHL13	CCDS14571.1	r.?	-	-	Del	intronic	D	117081056	117081058	1	63	755.563	-	-	1	1	1	KLHL13|CCDS14571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL13|ENST00000371876|r.849delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	11	19	11	19	0	0	./.	6	8	10	11	23	21	23	21	10	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663309421	1	14143866	TC	T	540	PASS	PRDM2	CCDS150.1	r.?	-	-	Del	intronic	D	14143866	14143869	1	28	482.841	-	-	2	1	1	PRDM2|CCDS150.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	PRDM2|CCDS150.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	6	5	9	23	33	23	33	5	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663310615	1	16946455	T	TGCTCACGCTGCA	290	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16946455	16946471	12	11	461.232	-	-	1	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	10	0	10	0	77	56	79	57	12	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663319158	1	46350224	A	AAAAT	277	PASS	MAST2	CCDS41326.1	r.?	-	-	Ins	intronic	I	46350224	46350248	4	12	256.204	-	-	5	1	-	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	25	19	25	0	0	./.	2	3	3	3	26	28	26	28	3	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663319264	1	46689376	T	TA	480	PASS	C1orf190	CCDS30703.1	r.?	-	-	Ins	downstream	I	46689376	46689381	1	24	423.773	-	-	4	1	1	C1orf190|CCDS30703.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	POMGNT1|ENST00000371992|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	17	11	17	11	0	0	./.	5	3	6	6	23	33	23	33	6	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663320786	1	53637581	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	53637581	53637591	1	20	370.124	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	10	0	0	./.	4	3	7	3	25	22	25	22	7	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663326838	1	75942885	G	GC	258	PASS	SLC44A5	CCDS667.1	r.?	-	-	Ins	intronic	I	75942885	75942886	1	35	530.469	-	-	0	1	1	SLC44A5|CCDS667.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC44A5|CCDS667.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	6	4	8	20	18	20	18	4	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663329029	1	82939737	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	82939737	82939741	2	12	268.245	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	3	5	19	33	19	33	3	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663333919	1	100189071	C	CA	540	PASS	FRRS1	CCDS30780.1	r.?	-	-	Ins	intronic	I	100189071	100189080	1	30	476.82	-	-	8	1	1	FRRS1|CCDS30780.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FRRS1|CCDS30780.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	18	0	0	./.	4	5	7	8	27	23	27	23	7	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663338781	1	117716354	TATTGCTGTAAGTTTATTATT	TCAGC	319	PASS	VTCN1	CCDS894.1	r.?	-	-	Complex	intronic	DI	117716355	117716374	20	30	0	-	-	0	1	1	VTCN1|CCDS894.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	VTCN1|CCDS894.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	9	2	0	0	30	13	31	13	9	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663343285	1	148676693	G	GTATA	271	PASS	NBPF15	ENST00000442702	r.?	-	-	Ins	intronic	I	148676693	148676699	4	54	665.528	-	-	2	1	1	NBPF15|ENST00000442702|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NBPF15|ENST00000442702|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	27	19	28	0	0	./.	8	5	12	5	109	164	109	170	12	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663344544	1	151519202	ATAT	A	358	PASS	TUFT1	CCDS1000.1	r.?	-	-	Del	intronic	D	151519202	151519207	3	14	374.941	-	-	1	1	1	TUFT1|CCDS1000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TUFT1|CCDS1000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	1	6	1	6	40	34	40	34	1	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663346621	1	158688032	AT	A	720	PASS	OR6K3	CCDS30903.1	r.?	-	-	Del	upstream	D	158688032	158688041	1	45	643.788	-	-	8	1	1	OR6K3|CCDS30903.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	OR6K3|CCDS30903.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	7	12	7	0	0	./.	4	8	9	8	28	36	28	36	9	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663347513	1	161497181	G	GGAT	259	PASS	HSPA7	CCDS1231.1	r.?	-	-	Ins	downstream	I	161497181	161497186	3	8	362.9	-	-	1	1	1	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	10	17	10	17	0	0	./.	7	0	8	0	47	34	47	34	8	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663353751	1	181939492	TA	T	540	PASS	-	-	-	-	-	Del	-	D	181939492	181939502	1	30	482.841	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	5	5	7	26	32	26	32	5	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663360339	1	202669894	TTTGA	T	720	PASS	SYT2	CCDS1427.1	r.?	-	-	Del	intronic	D	202669894	202669903	4	48	641.38	-	-	2	1	1	SYT2|CCDS1427.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYT2|CCDS1427.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	7	8	11	30	38	30	38	8	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663362273	1	208673518	AAAAG	A	720	PASS	-	-	-	-	-	Del	-	D	208673518	208673534	4	48	643.788	-	-	3	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	5	7	5	14	27	53	27	53	5	14	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663365915	1	220215519	T	TC	300	PASS	EPRS	CCDS31027.1	r.?	-	-	Ins	intronic	I	220215519	220215524	1	6	258.612	-	-	4	1	1	EPRS|CCDS31027.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPRS|CCDS31027.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	5	0	9	2	27	21	27	21	9	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663365958	1	220464206	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	220464206	220464214	1	16	424.375	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	7	1	9	4	46	37	46	37	9	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663366483	1	222513831	CA	C	540	PASS	-	-	-	-	-	Del	-	D	222513831	222513837	1	30	482.841	-	-	5	1	1	-	-	./.	0	0	0	0	27	3	27	3	0	0	./.	5	4	8	4	50	31	50	31	8	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663373603	1	243603552	TAAATA	T	656	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Del	intronic	D	243603552	243603564	5	50	696.835	-	-	2	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	9	4	11	5	40	35	40	35	11	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663377811	10	5250277	AT	A	480	PASS	AKR1C4	CCDS7064.1	r.?	-	-	Del	intronic	D	5250277	5250281	1	25	431.049	-	-	3	1	1	AKR1C4|CCDS7064.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKR1C4|CCDS7064.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	4	4	7	5	32	23	32	23	7	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663378941	10	8111491	C	CACTCTGG	464	PASS	GATA3	CCDS31143.1	r.1548_1549insacucugg	c.980_981insACTCTGG	p.R330fs*25	Ins	frameshift	I	8111491	8111500	7	81	794.065	-	-	1	1	1	GATA3|CCDS31143.1|r.1548_1549insacucugg|c.980_981insACTCTGG|p.R330fs*25|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	GATA3|CCDS31143.1|r.1548_1549insacucugg|c.980_981insACTCTGG|p.R330fs*25|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	11	23	11	23	0	0	./.	8	8	8	10	34	23	34	23	8	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663381581	10	15075230	AG	A	480	PASS	OLAH	ENST00000428897	r.?	-	-	Del	intronic	D	15075230	15075232	1	24	431.049	-	-	1	1	1	OLAH|ENST00000428897|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OLAH|ENST00000428897|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	5	3	5	5	24	16	24	16	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663385573	10	27723196	AT	A	780	PASS	-	-	-	-	-	Del	-	D	27723196	27723198	1	56	700.454	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	7	6	8	23	26	23	26	6	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663387759	10	34527519	T	TA	540	PASS	PARD3	CCDS7178.1	r.?	-	-	Ins	intronic	I	34527519	34527529	1	28	477.705	-	-	9	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	23	29	24	0	0	./.	6	3	7	4	29	27	30	27	7	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663388095	10	35772424	GTTTCTTTTTGTAA	G	493	PASS	CCNY	CCDS7189.1	r.?	-	-	Del	intronic	D	35772424	35772438	13	90	915.979	-	-	1	1	1	CCNY|CCDS7189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCNY|CCDS7189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	9	8	9	8	20	18	20	19	9	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663390888	10	43948370	CT	C	300	PASS	ZNF487	ENST00000437590	r.?	-	-	Del	intronic	D	43948370	43948378	1	6	269.405	-	-	7	1	1	ZNF487|ENST00000437590|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF487|ENST00000437590|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	5	0	7	1	29	22	29	22	7	1	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663394648	10	58957317	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	58957317	58957326	1	15	319.674	-	-	8	1	1	-	-	./.	0	0	0	0	22	7	22	7	0	0	./.	4	2	5	5	22	33	23	33	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663396194	10	63657794	C	CT	300	PASS	ARID5B	CCDS31208.1	r.?	-	-	Ins	upstream	I	63657794	63657803	1	6	265.191	-	-	8	1	1	ARID5B|CCDS31208.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ARID5B|CCDS31208.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	23	21	24	21	0	0	./.	0	5	3	5	26	24	26	24	3	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663399555	10	73673299	G	GT	1260	PASS	-	-	-	-	-	Ins	-	I	73673299	73673307	1	120	1107.42	-	-	7	1	1	-	-	./.	0	0	0	0	6	13	6	14	0	0	./.	14	7	17	7	32	29	33	30	17	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663406094	10	97458418	AG	A	660	PASS	TCTN3	CCDS31258.2	r.?	-	-	Del	upstream	D	97458418	97458422	1	36	590.284	-	-	3	1	1	TCTN3|CCDS31258.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TCTN3|CCDS31258.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	17	17	17	0	0	./.	3	8	5	10	14	19	14	19	5	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663419678	11	6376654	T	TATTCATTC	406	PASS	-	-	-	-	-	Ins	-	I	6376654	6376687	8	63	688.666	-	-	8	1	-	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	8	7	7	24	31	24	33	7	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663424557	11	23294795	CA	C	900	PASS	-	-	-	-	-	Del	-	D	23294795	23294797	1	70	807.093	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	6	9	7	10	22	23	22	23	7	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663435664	11	64012014	AAC	A	300	PASS	PPP1R14B	CCDS31596.1	r.922_923delGU	c.?	p.?	Del	3'UTR variant	D	64012014	64012020	2	12	268.83	-	-	2	1	1	PPP1R14B|CCDS31596.1|r.922_923delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PPP1R14B|CCDS31596.1|r.922_923delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	17	6	17	0	0	./.	3	2	6	3	10	13	10	13	6	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663445751	11	100311010	CT	C	420	PASS	-	-	-	-	-	Del	-	D	100311010	100311014	1	18	378.048	-	-	3	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	5	2	6	4	27	17	27	17	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663448545	11	108989814	AC	A	385	PASS	-	-	-	-	-	Del	-	D	108989814	108989816	1	30	485.46	-	-	1	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	4	5	5	7	18	15	18	15	5	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663454619	11	130565804	C	CA	420	PASS	C11orf44	ENST00000317019	r.?	-	-	Ins	intronic	I	130565804	130565808	1	20	373.834	-	-	3	1	1	C11orf44|ENST00000317019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C11orf44|ENST00000317019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	3	5	4	17	18	17	18	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663457373	12	6022910	AAATG	A	269	PASS	ANO2	CCDS44807.1	r.?	-	-	Del	intronic	D	6022910	6022916	4	10	267.771	-	-	1	1	1	ANO2|CCDS44807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO2|CCDS44807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	1	4	1	4	25	19	25	19	1	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663461051	12	16481992	CAT	C	540	PASS	-	-	-	-	-	Del	-	D	16481992	16481995	2	30	484.637	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	4	6	6	29	25	29	25	6	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663467980	12	40701235	G	GT	480	PASS	LRRK2	CCDS31774.1	r.?	-	-	Ins	intronic	I	40701235	40701242	1	25	426.507	-	-	6	1	1	LRRK2|CCDS31774.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRK2|CCDS31774.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	4	4	9	7	31	31	31	31	9	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663469890	12	46546349	A	ATT	900	PASS	-	-	-	-	-	Ins	-	I	46546349	46546352	2	72	790.67	-	-	2	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	8	7	9	9	46	33	47	34	9	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663470827	12	49737520	ATTTTTTTTTTTTTTTTTTTTTTTTTT	A	261	PASS	DNAJC22	CCDS8785.1	r.?	-	-	Del	upstream	D	49737520	49737565	26	24	465.973	-	-	1	1	-	DNAJC22|CCDS8785.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DNAJC22|CCDS8785.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	7	6	7	0	0	./.	7	2	4	1	26	14	29	15	7	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663470848	12	49840602	TTTGA	T	569	PASS	SPATS2	CCDS31794.1	r.?	-	-	Del	intronic	D	49840602	49840611	4	35	539.154	-	-	2	1	1	SPATS2|CCDS31794.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPATS2|CCDS31794.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	4	6	5	9	29	32	29	32	5	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663476151	12	68675925	CT	C	660	PASS	-	-	-	-	-	Del	-	D	68675925	68675928	1	42	593.07	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	5	6	6	7	29	29	29	29	6	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663481592	12	86571198	TAAAC	T	300	PASS	-	-	-	-	-	Del	-	D	86571198	86571206	4	10	269.577	-	-	1	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	1	4	4	5	33	36	33	36	4	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663487371	12	105211373	C	CT	480	PASS	SLC41A2	CCDS9100.2	r.?	-	-	Ins	intronic	I	105211373	105211383	1	25	425.905	-	-	9	1	1	SLC41A2|CCDS9100.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC41A2|CCDS9100.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	4	4	5	34	41	35	41	4	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663488293	12	108542781	AC	A	720	PASS	WSCD2	CCDS41828.1	r.?	-	-	Del	intronic	D	108542781	108542786	1	49	639.159	-	-	4	1	1	WSCD2|CCDS41828.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	WSCD2|CCDS41828.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	6	11	11	32	31	32	31	11	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663488398	12	108930161	AG	A	540	PASS	SART3	CCDS9117.1	r.?	-	-	Del	intronic	D	108930161	108930164	1	30	485.239	-	-	2	1	1	SART3|CCDS9117.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SART3|CCDS9117.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	5	5	6	27	35	27	35	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663490217	12	115439803	GA	G	300	PASS	-	-	-	-	-	Del	-	D	115439803	115439806	1	12	269.577	-	-	2	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	3	6	7	40	28	40	28	6	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663493579	12	124609247	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	124609247	124609255	1	10	265.965	-	-	7	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	1	4	4	6	30	34	30	35	4	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663495171	12	129096945	A	AT	780	PASS	TMEM132C	CCDS45009.1	r.?	-	-	Ins	intronic	I	129096945	129096955	1	56	692.472	-	-	9	1	1	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	6	7	7	11	27	41	29	41	7	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663512105	13	69728399	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	69728399	69728407	1	28	481.887	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	13	13	0	0	./.	3	6	5	10	19	21	19	23	5	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663512807	13	71667972	AC	A	300	PASS	-	-	-	-	-	Del	-	D	71667972	71667974	1	6	270.725	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	0	7	1	25	13	25	13	7	1	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663513166	13	73061160	ATGT	A	269	PASS	-	-	-	-	-	Del	-	D	73061160	73061167	3	12	270.725	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	4	21	13	21	13	2	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663516235	13	83830592	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	83830592	83830599	1	16	315.237	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	15	0	0	./.	3	3	5	4	21	23	21	24	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663532517	14	41364077	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	41364077	41364078	1	12	263.359	-	-	0	1	1	-	-	./.	0	0	0	0	13	14	14	14	0	0	./.	2	3	4	6	24	18	24	18	4	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663533683	14	44810662	AC	A	360	PASS	-	-	-	-	-	Del	-	D	44810662	44810664	1	7	321.691	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	6	0	12	0	24	21	24	21	12	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663535440	14	50429107	A	AG	300	PASS	AL117692.1	ENST00000510752	r.?	-	-	Ins	upstream	I	50429107	50429108	1	12	267.574	-	-	0	1	1	AL117692.1|ENST00000510752|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	AL117692.1|ENST00000510752|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	./.	0	0	0	0	13	14	14	14	0	0	./.	2	3	3	6	17	33	17	33	3	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663535592	14	50826601	CAT	C	449	PASS	CDKL1	CCDS9699.1	r.?	-	-	Del	intronic	D	50826601	50826605	2	24	431.731	-	-	1	1	1	CDKL1|CCDS9699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKL1|CCDS9699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	3	5	3	28	15	28	15	5	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663539256	14	63246269	GT	G	360	PASS	KCNH5	CCDS9756.1	r.?	-	-	Del	intronic	D	63246269	63246277	1	15	324.099	-	-	7	1	1	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	4	5	7	27	33	27	33	5	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663546336	14	86746203	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	86746203	86746207	2	20	378.216	-	-	3	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	4	4	5	31	29	31	29	4	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663546584	14	87495838	GATA	G	360	PASS	-	-	-	-	-	Del	-	D	87495838	87495844	3	15	324.701	-	-	1	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	2	4	3	5	25	25	25	25	3	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663549548	14	97327192	CA	C	540	PASS	VRK1	CCDS9947.1	r.?	-	-	Del	intronic	D	97327192	97327196	1	30	487.052	-	-	3	1	1	VRK1|CCDS9947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VRK1|CCDS9947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	27	12	27	0	0	./.	5	4	6	4	28	26	28	26	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663549925	14	98726947	AAACTTT	A	319	PASS	-	-	-	-	-	Del	-	D	98726947	98726960	6	40	595.285	-	-	2	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	7	4	6	7	25	25	26	25	7	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663555427	15	26089751	GC	G	480	PASS	ATP10A	CCDS32178.1	r.?	-	-	Del	intronic	D	26089751	26089758	1	25	430.544	-	-	6	1	1	ATP10A|CCDS32178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP10A|CCDS32178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	4	4	4	4	14	17	14	17	4	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663558845	15	38410673	CTATCATGAAGAGATCCTT	C	319	PASS	-	-	-	-	-	Del	-	D	38410673	38410693	18	36	593.126	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	8	3	8	3	14	3	14	3	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663565507	15	62292406	C	CA	300	PASS	VPS13C	CCDS32257.1	r.?	-	-	Ins	intronic	I	62292406	62292416	1	12	267.961	-	-	9	1	1	VPS13C|CCDS32257.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13C|CCDS32257.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	3	5	12	14	12	14	3	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663566548	15	65677230	TCCTCTTCACAAGCACAGAGACCCTTTCCTCCTTTCCTG	T	348	PASS	IGDCC4	CCDS10206.1	r.?	-	-	Del	intronic	D	65677230	65677271	38	40	645.514	-	-	1	1	1	IGDCC4|CCDS10206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGDCC4|CCDS10206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	0	13	0	13	0	0	./.	3	9	2	4	5	7	7	12	4	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663569206	15	76726087	TC	T	360	PASS	SCAPER	ENST00000303521	r.?	-	-	Del	intronic	D	76726087	76726090	1	15	325.165	-	-	2	1	1	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	2	5	3	17	16	17	16	5	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663570169	15	80516771	CCTT	C	476	PASS	-	-	-	-	-	Del	-	D	80516771	80516778	3	32	541.34	-	-	2	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	7	3	8	7	18	16	18	16	8	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663573841	15	94537858	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	94537858	94537865	1	15	321.553	-	-	6	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	4	3	8	24	32	24	34	3	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663575648	15	100438463	AAG	A	854	PASS	-	-	-	-	-	Del	-	D	100438463	100438472	2	66	810.505	-	-	4	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	5	10	10	14	30	38	30	38	10	14	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663578028	16	5724196	ACCAA	AAC	329	PASS	-	-	-	-	-	Complex	-	DI	5724197	5724200	4	16	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	3	3	0	0	22	23	22	23	3	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663578587	16	7166167	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	7166167	7166173	1	15	318.891	-	-	5	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	6	4	34	22	34	22	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663580558	16	11796515	CAG	C	480	PASS	TXNDC11	CCDS32387.1	r.?	-	-	Del	intronic	D	11796515	11796520	2	21	430.205	-	-	2	1	1	TXNDC11|CCDS32387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNDC11|CCDS32387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	2	6	3	6	8	31	8	31	3	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663583612	16	21518374	CAGAA	C	805	PASS	-	-	-	-	-	Del	-	D	21518374	21518380	4	77	865.227	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	6	10	7	11	23	37	23	37	7	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663586826	16	32138584	A	AT	251	PASS	-	-	-	-	-	Ins	-	I	32138584	32138591	1	20	373.645	-	-	6	1	1	-	-	./.	0	0	0	0	42	51	42	51	0	0	./.	3	4	6	4	82	103	83	104	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663591478	16	54492727	TTTTG	T	300	PASS	ENSG00000227093	ENST00000449142	r.?	-	-	Del	intronic	D	54492727	54492743	4	6	270.76	-	-	3	1	1	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	0	5	1	20	13	20	13	5	1	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663596514	16	73828834	TA	T	420	PASS	-	-	-	-	-	Del	-	D	73828834	73828842	1	18	379.064	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	5	3	7	11	11	11	11	3	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663602302	17	2526862	G	GT	300	PASS	PAFAH1B1	CCDS32528.1	r.?	-	-	Ins	intronic	I	2526862	2526872	1	10	262.442	-	-	9	1	1	PAFAH1B1|CCDS32528.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PAFAH1B1|CCDS32528.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	4	4	5	16	14	16	14	4	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663602524	17	3174023	CCTG	CA	1165	PASS	-	-	-	-	-	Complex	-	DI	3174024	3174026	3	140	0	-	-	0	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	9	13	0	0	15	29	15	29	9	13	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663603510	17	6030241	GTCTAACATTCA	G	261	PASS	WSCD1	CCDS32538.1	r.?	-	-	Del	downstream	D	6030241	6030254	11	28	485.882	-	-	1	1	1	WSCD1|CCDS32538.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	WSCD1|CCDS32538.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	26	17	26	0	0	./.	3	6	4	6	17	14	17	14	4	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663603591	17	6309706	TAAATAAA	T	263	PASS	-	-	-	-	-	Del	-	D	6309706	6309714	7	21	432.43	-	-	1	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	2	4	2	14	14	15	14	6	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663605681	17	12593948	CG	C	720	PASS	MYOCD	CCDS11163.1	r.?	-	-	Del	intronic	D	12593948	12593950	1	49	647.441	-	-	1	1	1	MYOCD|CCDS11163.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYOCD|CCDS11163.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	6	6	6	7	14	26	15	26	6	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663607835	17	20536462	CG	C	884	PASS	-	-	-	-	-	Del	-	D	20536462	20536464	1	132	1133.93	-	-	1	1	1	-	-	./.	0	0	0	0	8	2	8	2	0	0	./.	10	11	13	12	18	21	18	21	13	12	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663612373	17	37129977	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	37129977	37129987	1	16	320.71	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	19	16	0	0	./.	3	3	6	4	20	16	20	16	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663614633	17	45349025	AT	A	300	PASS	ITGB3	CCDS11511.1	r.?	-	-	Del	intronic	D	45349025	45349027	1	10	269.065	-	-	1	1	1	ITGB3|CCDS11511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGB3|CCDS11511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	2	6	18	22	18	22	2	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663614961	17	46208128	C	CT	1463	PASS	SKAP1	CCDS32674.1	r.?	-	-	Ins	downstream	I	46208128	46208137	1	176	1487.02	-	-	8	1	-	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	21	15	22	15	0	0	./.	7	21	18	29	67	72	71	72	18	29	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663615372	17	47298224	AAT	A	1998	PASS	PHOSPHO1	CCDS45726.1	r.?	-	-	Del	downstream	D	47298224	47298228	2	368	1989.15	-	-	1	1	-	PHOSPHO1|CCDS45726.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ABI3|CCDS11546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	3	9	3	0	0	./.	22	15	25	15	49	34	49	34	25	15	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663618515	17	55807543	GGT	G	569	PASS	-	-	-	-	-	Del	-	D	55807543	55807549	2	11	526.69	-	-	2	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	10	0	12	0	64	46	64	46	12	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663618686	17	56221234	TC	T	360	PASS	-	-	-	-	-	Del	-	D	56221234	56221236	1	7	320.108	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	0	10	0	67	61	67	61	10	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663620224	17	60182098	C	CCT	269	PASS	-	-	-	-	-	Ins	-	I	60182098	60182099	2	6	261.84	-	-	0	1	-	-	-	./.	0	0	0	0	14	9	14	11	0	0	./.	0	5	0	3	47	55	48	55	0	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663620296	17	60375582	CAG	C	329	PASS	ENSG00000238209	ENST00000424665	r.?	-	-	Del	upstream	D	60375582	60375587	2	16	809.603	-	-	2	1	1	ENSG00000238209|ENST00000424665|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000238209|ENST00000424665|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	4	10	4	0	0	./.	0	15	0	17	66	49	66	49	0	17	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663620585	17	61032211	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	61032211	61032220	1	28	473.841	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	16	0	0	./.	6	3	7	5	94	63	96	63	7	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663620687	17	61365061	TG	T	300	PASS	TANC2	CCDS45754.1	r.?	-	-	Del	intronic	D	61365061	61365063	1	6	264.85	-	-	1	1	1	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	5	0	10	0	73	57	73	58	10	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663620839	17	61872010	A	AT	329	PASS	DDX42	CCDS32704.1	r.?	-	-	Ins	intronic	I	61872010	61872014	1	15	313.486	-	-	3	1	1	DDX42|CCDS32704.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DDX42|CCDS32704.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	4	5	6	58	67	59	70	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663620855	17	61908067	TG	T	300	PASS	FTSJ3	CCDS11644.1	r.?	-	-	Del	upstream	D	61908067	61908069	1	6	266.055	-	-	1	1	1	FTSJ3|CCDS11644.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PSMC5|CCDS11645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	5	0	9	0	57	62	57	62	9	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663622341	17	65624060	TG	T	300	PASS	PITPNC1	ENST00000423236	r.?	-	-	Del	intronic	D	65624060	65624062	1	6	269.065	-	-	1	1	1	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	0	10	0	45	36	45	36	10	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663623250	17	67779439	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	67779439	67779447	1	24	427.614	-	-	7	1	1	-	-	./.	0	0	0	0	19	15	19	16	0	0	./.	3	5	3	6	36	56	36	56	3	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663623738	17	69168939	ACT	A	420	PASS	-	-	-	-	-	Del	-	D	69168939	69168944	2	18	376.57	-	-	2	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	2	5	3	7	51	46	51	46	3	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663624866	17	72328353	G	GTT	269	PASS	KIF19	CCDS32718.2	r.?	-	-	Ins	intronic	I	72328353	72328355	2	10	255.217	-	-	1	1	-	KIF19|CCDS32718.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF19|CCDS32718.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	7	4	9	0	0	./.	1	4	2	7	21	41	23	41	2	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663626893	17	77166222	G	GGGAAGGAA	261	PASS	ENSG00000167281	CCDS45805.1	r.?	-	-	Ins	intronic	I	77166222	77166237	8	28	438.319	-	-	3	1	1	ENSG00000167281|CCDS45805.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000167281|CCDS45805.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	8	3	8	0	0	./.	6	3	6	1	36	41	36	41	6	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663630607	18	6163504	AC	A	1020	PASS	L3MBTL4	CCDS11839.2	r.?	-	-	Del	intronic	D	6163504	6163506	1	48	918.694	-	-	1	1	1	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	15	2	19	2	38	11	38	11	19	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663635288	18	22071544	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	22071544	22071548	1	26	695.483	-	-	3	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	12	1	15	2	40	13	40	14	15	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663636881	18	27309343	G	GA	1080	PASS	-	-	-	-	-	Ins	-	I	27309343	27309353	1	99	956.586	-	-	9	1	1	-	-	./.	0	0	0	0	22	12	24	12	0	0	./.	8	10	10	15	32	30	32	30	10	15	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663647133	18	63945146	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	63945146	63945154	1	42	588.995	-	-	7	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	5	6	6	8	22	30	23	30	6	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663648114	18	66590608	T	TA	300	PASS	CCDC102B	CCDS11996.2	r.?	-	-	Ins	intronic	I	66590608	66590613	1	12	267.725	-	-	4	1	1	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	5	3	21	20	21	20	5	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663649342	18	69905834	GA	G	480	PASS	-	-	-	-	-	Del	-	D	69905834	69905839	1	25	433.177	-	-	4	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	4	5	6	27	36	27	36	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663649466	18	70212139	A	AT	420	PASS	CBLN2	CCDS11999.1	r.?	-	-	Ins	upstream	I	70212139	70212149	1	20	374.815	-	-	9	1	1	CBLN2|CCDS11999.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CBLN2|CCDS11999.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	14	5	14	5	0	0	./.	4	3	5	5	17	21	17	21	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663661319	19	33643254	CTATT	C	1376	PASS	WDR88	CCDS12429.1	r.?	-	-	Del	intronic	D	33643254	33643264	4	182	1355.82	-	-	2	1	1	WDR88|CCDS12429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR88|CCDS12429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	13	12	15	13	24	23	24	23	15	14	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663661661	19	34780633	A	AT	480	PASS	KIAA0355	CCDS12436.1	r.?	-	-	Ins	intronic	I	34780633	34780634	1	24	429.047	-	-	0	1	1	KIAA0355|CCDS12436.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA0355|CCDS12436.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	5	7	8	15	28	16	28	7	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663662361	19	37163219	AT	A	1140	PASS	-	-	-	-	-	Del	-	D	37163219	37163222	1	104	1029.82	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	7	12	18	16	26	28	26	28	18	16	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663667690	19	54013600	CG	C	480	PASS	-	-	-	-	-	Del	-	D	54013600	54013605	1	24	431.455	-	-	4	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	5	5	5	47	34	47	34	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663668283	19	55362026	AAGATATGGGCCTGGAGTGG	A	353	PASS	KIR3DL2	CCDS12906.1	r.?	-	-	Del	intronic	D	55362026	55362079	19	44	703.222	-	-	2	1	1	KIR3DL2|CCDS12906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIR3DL2|CCDS12906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	1	14	1	0	0	./.	3	10	0	1	33	44	34	47	3	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663671262	2	4594055	TTATC	T	420	PASS	ENSG00000228584	ENST00000446457	r.?	-	-	Del	intronic	D	4594055	4594067	4	18	376.18	-	-	2	1	-	ENSG00000228584|ENST00000446457|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000228584|ENST00000446457|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	4	7	34	25	34	25	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663679204	2	35201283	GACATAAAAACAGTTC	G	290	PASS	-	-	-	-	-	Del	-	D	35201283	35201303	15	32	537.4	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	7	3	7	3	28	23	28	23	7	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663686360	2	61339580	CAT	C	600	PASS	KIAA1841	CCDS46296.1	r.?	-	-	Del	intronic	D	61339580	61339585	2	35	537.4	-	-	2	1	1	KIAA1841|CCDS46296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1841|CCDS46296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	22	9	22	0	0	./.	4	6	5	7	23	25	23	25	5	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663687274	2	65025039	T	TGA	660	PASS	-	-	-	-	-	Ins	-	I	65025039	65025043	2	42	577.292	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	13	0	0	./.	5	6	6	8	30	24	30	24	6	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663692697	2	85182331	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	85182331	85182340	1	24	423.297	-	-	8	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	3	5	4	7	22	25	22	25	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663696006	2	100669073	CCAGA	C	389	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100669073	100669082	4	18	376.18	-	-	2	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	5	2	5	4	19	25	19	25	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663697033	2	105206069	CAG	C	254	PASS	-	-	-	-	-	Del	-	D	105206069	105206076	2	12	268.7	-	-	3	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	5	4	17	18	17	18	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663716936	2	179499718	CAA	C	420	PASS	TTN	ENST00000342992	r.?	-	-	Del	intronic	D	179499718	179499722	2	18	374.374	-	-	3	1	1	TTN|ENST00000342992|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TTN|ENST00000342992|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	2	6	5	25	14	25	14	6	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663717631	2	182347054	TA	T	480	PASS	ITGA4	CCDS42788.1	r.?	-	-	Del	intronic	D	182347054	182347060	1	21	428.716	-	-	5	1	1	ITGA4|CCDS42788.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA4|CCDS42788.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	6	6	6	20	19	20	19	6	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663717663	2	182446820	CA	C	600	PASS	CERKL	CCDS46466.1	r.?	-	-	Del	intronic	D	182446820	182446823	1	35	537.4	-	-	2	1	1	CERKL|CCDS46466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CERKL|CCDS46466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	6	4	7	8	33	16	33	16	7	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663723060	2	202268480	A	AG	420	PASS	TRAK2	CCDS2347.1	r.?	-	-	Ins	intronic	I	202268480	202268481	1	14	371.363	-	-	0	1	1	TRAK2|CCDS2347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAK2|CCDS2347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	6	5	6	23	17	23	17	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663739356	20	13449457	G	GA	418	PASS	TASP1	CCDS13116.1	r.?	-	-	Ins	intronic	I	13449457	13449466	1	24	427.988	-	-	8	1	1	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	5	4	9	28	45	28	46	4	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663746056	20	36075142	C	CTTCCTTCCTTCCTTCTTCCCTCCTTTCT	300	PASS	-	-	-	-	-	Ins	-	I	36075142	36075158	28	10	177.936	-	-	0	1	-	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	1	4	0	0	28	29	31	29	1	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663747971	20	43482165	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	43482165	43482173	1	12	321.894	-	-	7	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	5	1	6	2	22	27	22	27	6	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663758335	21	14702519	ATCTC	A	259	PASS	-	-	-	-	-	Del	-	D	14702519	14702528	4	12	596.548	-	-	4	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	11	0	14	0	33	19	33	19	14	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663759990	21	20154603	TA	T	360	PASS	-	-	-	-	-	Del	-	D	20154603	20154608	1	12	326.047	-	-	4	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	1	5	4	11	22	31	22	31	4	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663775061	22	33241215	C	CA	389	PASS	TIMP3	CCDS13911.1	r.?	-	-	Ins	intronic	I	33241215	33241216	1	20	377.977	-	-	0	1	1	TIMP3|CCDS13911.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TIMP3|CCDS13911.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	4	6	5	18	20	18	20	6	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663787266	3	22089295	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	22089295	22089302	1	100	955.77	-	-	6	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	9	9	16	15	41	45	41	45	16	15	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663792976	3	42060664	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	42060664	42060673	1	16	318.791	-	-	8	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	4	4	30	32	30	32	4	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663795987	3	53250947	TG	T	360	PASS	-	-	-	-	-	Del	-	D	53250947	53250953	1	16	321.199	-	-	5	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	3	3	4	23	31	23	31	3	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663797425	3	58011135	G	GC	269	PASS	FLNB	CCDS2885.1	r.?	-	-	Ins	intronic	I	58011135	58011137	1	12	265.659	-	-	1	1	1	FLNB|CCDS2885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FLNB|CCDS2885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	3	4	20	30	21	31	3	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663797727	3	59065134	TA	T	509	PASS	-	-	-	-	-	Del	-	D	59065134	59065138	1	28	483.605	-	-	3	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	6	4	7	29	32	29	32	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663800914	3	69248091	AT	A	300	PASS	FRMD4B	CCDS46863.1	r.?	-	-	Del	intronic	D	69248091	69248096	1	10	267.465	-	-	4	1	1	FRMD4B|CCDS46863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD4B|CCDS46863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	17	5	17	0	0	./.	1	4	1	4	18	32	18	32	1	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663801030	3	69564352	GA	G	1260	PASS	FRMD4B	ENST00000459638	r.?	-	-	Del	intronic	D	69564352	69564355	1	126	1128.41	-	-	2	1	1	FRMD4B|ENST00000459638|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FRMD4B|ENST00000459638|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	8	13	10	15	22	29	22	29	10	15	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663802806	3	75192998	G	GC	660	PASS	-	-	-	-	-	Ins	-	I	75192998	75193008	1	22	578.429	-	-	9	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	1	10	0	1	26	28	27	28	1	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663806684	3	84947656	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	84947656	84947665	1	20	371.923	-	-	8	1	1	-	-	./.	0	0	0	0	15	25	15	25	0	0	./.	3	4	7	6	36	33	36	34	7	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663807142	3	86324782	AGT	A	420	PASS	-	-	-	-	-	Del	-	D	86324782	86324785	2	20	376.137	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	3	6	5	33	35	33	35	6	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663809250	3	96077909	G	GA	569	PASS	-	-	-	-	-	Ins	-	I	96077909	96077917	1	35	530.716	-	-	7	1	1	-	-	./.	0	0	0	0	29	12	29	13	0	0	./.	6	4	7	6	37	23	39	25	7	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663811214	3	103347011	TTTTG	T	660	PASS	-	-	-	-	-	Del	-	D	103347011	103347038	4	40	590.47	-	-	6	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	7	8	8	22	20	22	20	8	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663812064	3	105918531	GA	G	720	PASS	-	-	-	-	-	Del	-	D	105918531	105918537	1	49	644.806	-	-	5	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	6	7	6	31	44	31	44	7	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663812582	3	107813154	ATAT	A	449	PASS	CD47	CCDS46882.1	r.?	-	-	Del	upstream	D	107813154	107813158	3	24	429.871	-	-	1	1	1	CD47|CCDS46882.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CD47|CCDS46882.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	6	5	6	0	0	./.	5	3	7	7	25	35	25	35	7	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663814495	3	114155062	A	AT	840	PASS	ZBTB20	CCDS2981.1	r.?	-	-	Ins	intronic	I	114155062	114155072	1	55	739.631	-	-	9	1	1	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	10	4	11	7	42	31	42	31	11	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663821443	3	138633331	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	138633331	138633340	1	15	317.587	-	-	8	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	4	2	6	2	26	21	27	22	6	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663821911	3	140631390	G	GA	449	PASS	-	-	-	-	-	Ins	-	I	140631390	140631398	1	24	423.85	-	-	7	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	5	3	6	4	29	34	29	34	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663824208	3	148268195	AT	A	420	PASS	-	-	-	-	-	Del	-	D	148268195	148268205	1	14	375.535	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	1	6	3	7	28	32	28	32	3	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663829625	3	165296866	TAATTTC	T	580	PASS	-	-	-	-	-	Del	-	D	165296866	165296874	6	120	1074.68	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	9	11	9	11	27	31	27	31	9	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663837606	3	190054400	TG	T	420	PASS	-	-	-	-	-	Del	-	D	190054400	190054403	1	18	371.32	-	-	2	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	5	3	6	21	26	21	26	3	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663842347	4	7007676	TTAAG	T	685	PASS	TBC1D14	CCDS3394.2	r.?	-	-	Del	intronic	D	7007676	7007681	4	60	751.625	-	-	1	1	1	TBC1D14|CCDS3394.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D14|CCDS3394.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	5	9	5	10	16	35	16	35	5	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663852071	4	39908552	A	AC	300	PASS	PDS5A	CCDS47045.1	r.?	-	-	Ins	intronic	I	39908552	39908553	1	6	265.255	-	-	0	1	-	PDS5A|CCDS47045.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDS5A|CCDS47045.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	0	5	1	0	33	25	33	25	1	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663856115	4	54565220	G	GT	360	PASS	AC110792.1	ENST00000511394	r.?	-	-	Ins	intronic	I	54565220	54565222	1	16	319.028	-	-	1	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	3	4	14	27	14	27	3	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663858170	4	61207770	ATTC	A	360	PASS	-	-	-	-	-	Del	-	D	61207770	61207779	3	15	320.835	-	-	2	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	4	2	4	4	22	28	22	28	4	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663858561	4	62222288	G	GTAA	449	PASS	LPHN3	ENST00000512091	r.?	-	-	Ins	intronic	I	62222288	62222294	3	25	415.738	-	-	1	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	4	4	5	4	20	16	20	16	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663858768	4	62884718	CTT	C	780	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62884718	62884721	2	56	699.055	-	-	2	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	7	6	7	13	16	13	16	6	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663858830	4	63114402	CTGCTCCACCCTG	C	261	PASS	-	-	-	-	-	Del	-	D	63114402	63114415	12	28	482.757	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	3	6	3	26	18	26	18	6	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663860521	4	67789541	TA	T	300	PASS	-	-	-	-	-	Del	-	D	67789541	67789545	1	12	268.867	-	-	3	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	4	7	24	26	24	26	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663860818	4	68884601	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	68884601	68884609	1	24	425.371	-	-	7	1	-	-	-	./.	0	0	0	0	13	17	14	17	0	0	./.	3	5	5	6	21	32	21	32	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663862983	4	75955685	T	TA	360	PASS	PARM1	CCDS47077.1	r.?	-	-	Ins	intronic	I	75955685	75955694	1	12	319.028	-	-	8	1	1	PARM1|CCDS47077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARM1|CCDS47077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	5	1	8	2	26	12	26	12	8	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663863913	4	78747492	C	CGAACGTTCAATAAGTTCTTTCAAAGAAAGAACTTATT	265	PASS	-	-	-	-	-	Ins	-	I	78747492	78747517	37	14	220.481	-	-	0	1	1	-	-	./.	0	0	0	0	17	16	17	17	0	0	./.	6	1	0	0	35	26	39	29	6	1	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663864792	4	81750041	C	CA	689	PASS	C4orf22	CCDS3587.1	r.?	-	-	Ins	intronic	I	81750041	81750048	1	49	627.22	-	-	6	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	6	6	7	8	30	38	32	38	8	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663870047	4	99388799	TAC	T	480	PASS	TSPAN5	CCDS3646.1	r.?	-	-	Del	downstream	D	99388799	99388803	2	25	428.984	-	-	1	1	1	TSPAN5|CCDS3646.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TSPAN5|CCDS3646.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	14	9	14	0	0	./.	4	4	5	5	25	26	25	26	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663871650	4	104700019	ATGT	A	269	PASS	-	-	-	-	-	Del	-	D	104700019	104700026	3	12	268.867	-	-	2	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	2	3	3	5	22	22	22	22	3	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663872121	4	106583796	CTATT	C	269	PASS	ENSG00000236699	ENST00000420470	r.?	-	-	Del	intronic	D	106583796	106583807	4	6	268.867	-	-	2	1	1	ENSG00000236699|ENST00000420470|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000236699|ENST00000420470|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	0	6	0	21	22	21	22	6	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663872302	4	107573350	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	107573350	107573358	1	28	478.543	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	17	17	0	0	./.	3	6	4	7	22	37	22	37	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663875167	4	116883626	T	TA	1080	PASS	-	-	-	-	-	Ins	-	I	116883626	116883636	1	96	955.881	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	15	18	0	0	./.	11	7	15	10	33	29	33	29	15	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663875332	4	117428922	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	117428922	117428932	1	15	318.426	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	17	15	0	0	./.	4	2	7	3	28	20	28	20	7	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663875602	4	118264034	T	TTATATATAATATATATATATATTATAATA	290	PASS	-	-	-	-	-	Ins	-	I	118264034	118264052	29	36	361.331	-	-	0	1	-	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	5	0	0	8	16	11	19	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663883950	4	145758514	TG	T	420	PASS	-	-	-	-	-	Del	-	D	145758514	145758516	1	14	376.414	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	1	6	2	8	31	28	31	28	2	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663884132	4	146942443	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	146942443	146942453	1	24	424.167	-	-	9	1	-	-	-	./.	0	0	0	0	17	15	18	15	0	0	./.	3	5	5	6	28	35	28	36	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663891959	4	174702278	TA	T	1080	PASS	-	-	-	-	-	Del	-	D	174702278	174702288	1	99	967.922	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	10	8	15	11	30	29	30	29	15	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663893301	4	178892788	A	AT	360	PASS	ENSG00000231171	ENST00000507870	r.?	-	-	Ins	intronic	I	178892788	178892797	1	15	319.028	-	-	8	1	1	ENSG00000231171|ENST00000507870|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000231171|ENST00000507870|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	2	7	3	29	22	29	22	7	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663893521	4	179566973	G	GT	960	PASS	-	-	-	-	-	Ins	-	I	179566973	179566980	1	65	850.141	-	-	6	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	4	12	6	13	32	37	32	37	6	13	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663893963	4	180809247	AACCAAGGC	A	377	PASS	-	-	-	-	-	Del	-	D	180809247	180809259	8	54	699.055	-	-	1	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	8	5	8	6	31	18	31	18	8	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663896504	4	187800443	AT	A	660	PASS	-	-	-	-	-	Del	-	D	187800443	187800449	1	40	590.906	-	-	5	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	7	4	8	7	22	32	22	32	8	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663902749	5	10191062	AG	A	360	PASS	-	-	-	-	-	Del	-	D	10191062	10191064	1	7	317.775	-	-	1	1	1	-	-	./.	0	0	0	0	16	2	16	2	0	0	./.	6	0	8	0	61	26	61	26	8	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663904374	5	14677725	A	AT	1140	PASS	FAM105B	CCDS43302.1	r.?	-	-	Ins	intronic	I	14677725	14677735	1	110	1003.48	-	-	9	1	1	FAM105B|CCDS43302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM105B|CCDS43302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	10	9	17	13	46	37	47	38	17	13	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663907477	5	23870396	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	23870396	23870405	1	10	261	-	-	8	1	1	-	-	./.	0	0	0	0	19	23	19	24	0	0	./.	4	1	6	4	51	68	51	68	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663908390	5	26185337	C	CAA	329	PASS	-	-	-	-	-	Ins	-	I	26185337	26185339	2	15	312.959	-	-	1	1	-	-	-	./.	0	0	0	0	18	8	19	8	0	0	./.	2	4	2	6	66	50	66	51	2	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663909221	5	28472183	G	GA	3000	PASS	-	-	-	-	-	Ins	-	I	28472183	28472191	1	667	2655.75	-	-	7	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	22	28	37	34	83	71	84	71	37	34	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663910668	5	31919836	A	AAAAC	377	PASS	PDZD2	CCDS34137.1	r.?	-	-	Ins	intronic	I	31919836	31919837	4	36	659.815	-	-	0	1	-	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	3	14	3	0	0	./.	11	2	0	3	43	25	44	26	11	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663912055	5	35687144	ATGCTTGGAAAAACAATTG	A	261	PASS	SPEF2	CCDS43309.1	r.?	-	-	Del	intronic	D	35687144	35687165	18	30	483.888	-	-	1	1	1	SPEF2|CCDS43309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPEF2|CCDS43309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	5	4	5	4	51	37	51	37	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663914934	5	44622453	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	44622453	44622457	2	6	262.204	-	-	1	1	-	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	5	0	5	0	46	32	46	32	5	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663916000	5	52887303	GT	G	420	PASS	NDUFS4	CCDS3960.1	r.?	-	-	Del	intronic	D	52887303	52887305	1	8	369.133	-	-	1	1	1	NDUFS4|CCDS3960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDUFS4|CCDS3960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	7	0	14	0	32	23	32	23	14	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663917016	5	55852303	CAGA	C	480	PASS	ENSG00000225940	ENST00000438651	r.?	-	-	Del	intronic	D	55852303	55852309	3	24	430.123	-	-	1	1	1	ENSG00000225940|ENST00000438651|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000225940|ENST00000438651|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	3	5	5	6	20	28	20	28	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663925477	5	88466897	AG	A	1080	PASS	-	-	-	-	-	Del	-	D	88466897	88466905	1	99	961.153	-	-	7	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	8	10	10	20	31	35	31	35	10	20	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663926649	5	95034097	G	GC	1140	PASS	-	-	-	-	-	Ins	-	I	95034097	95034099	1	108	1007.09	-	-	1	1	1	-	-	./.	0	0	0	0	5	11	6	11	0	0	./.	11	8	18	16	36	35	38	35	18	16	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663940721	5	149550432	CCTTTT	C	389	PASS	CDX1	CCDS4304.1	r.?	-	-	Del	intronic	D	149550432	149550440	5	14	376.357	-	-	1	1	1	CDX1|CCDS4304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDX1|CCDS4304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	1	6	3	8	31	43	31	43	3	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663942940	5	157675025	TAC	T	301	PASS	-	-	-	-	-	Del	-	D	157675025	157675039	2	16	322.592	-	-	6	1	-	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	3	7	7	30	34	30	34	7	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663943727	5	160600102	GATAAC	G	896	PASS	-	-	-	-	-	Del	-	D	160600102	160600113	5	90	914.01	-	-	2	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	8	9	9	11	24	33	24	33	9	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663944102	5	161760160	CAT	C	749	PASS	-	-	-	-	-	Del	-	D	161760160	161760164	2	56	697.745	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	7	6	7	7	33	39	33	39	7	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663945667	5	166833661	CTGAT	C	507	PASS	-	-	-	-	-	Del	-	D	166833661	166833668	4	32	537.051	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	7	3	8	3	39	14	39	14	8	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663946517	5	169626846	TTGAA	T	480	PASS	AC008660.1	ENST00000506431	r.?	-	-	Del	upstream	D	169626846	169626854	4	21	430.123	-	-	1	1	1	AC008660.1|ENST00000506431|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	AC008660.1|ENST00000506431|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	14	21	14	21	0	0	./.	6	2	6	3	22	20	22	20	6	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663951592	6	4301106	TCG	T	420	PASS	-	-	-	-	-	Del	-	D	4301106	4301110	2	18	376.899	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	5	5	8	24	34	24	34	5	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663953727	6	9432017	AAC	A	449	PASS	-	-	-	-	-	Del	-	D	9432017	9432023	2	25	430.741	-	-	2	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	4	4	4	24	33	24	33	4	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663959372	6	24386561	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	24386561	24386571	1	12	319.444	-	-	9	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	1	5	4	7	32	45	32	46	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663959883	6	25552931	C	CT	780	PASS	LRRC16A	ENST00000329474	r.?	-	-	Ins	intronic	I	25552931	25552939	1	54	688.515	-	-	7	1	1	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	8	5	10	6	35	25	35	25	10	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663960212	6	26590366	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	26590366	26590367	1	12	262.591	-	-	0	1	-	-	-	./.	0	0	0	0	13	14	13	15	0	0	./.	2	3	2	5	18	21	18	21	2	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663962909	6	32790110	C	CA	360	PASS	TAP2	CCDS4755.1	r.?	-	-	Ins	intronic	I	32790110	32790119	1	16	318.239	-	-	8	1	1	TAP2|CCDS4755.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TAP2|CCDS4755.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	4	5	28	34	28	34	4	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663963295	6	33473695	TA	T	780	PASS	-	-	-	-	-	Del	-	D	33473695	33473697	1	56	696.944	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	7	8	9	29	34	29	34	8	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663965518	6	39694359	G	GA	629	PASS	KIF6	CCDS4844.1	r.?	-	-	Ins	upstream	I	39694359	39694368	1	42	583.84	-	-	8	1	1	KIF6|CCDS4844.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	KIF6|CCDS4844.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	20	18	20	18	0	0	./.	5	6	6	9	29	40	30	40	6	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663967313	6	45780103	TAACCCTCAGGGTGGATGGAGAA	T	290	PASS	-	-	-	-	-	Del	-	D	45780103	45780128	22	35	538.427	-	-	1	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	6	4	5	4	18	21	19	21	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663967976	6	48017857	TA	T	420	PASS	C6orf138	ENST00000398738	r.?	-	-	Del	intronic	D	48017857	48017860	1	8	376.297	-	-	2	1	1	C6orf138|ENST00000398738|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf138|ENST00000398738|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	27	11	27	0	0	./.	7	0	8	6	30	25	30	25	8	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663968326	6	49520261	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	49520261	49520263	1	6	266.203	-	-	1	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	5	0	8	3	27	22	28	23	8	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663970180	6	55592673	CTCA	C	509	PASS	-	-	-	-	-	Del	-	D	55592673	55592680	3	30	482.778	-	-	2	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	4	5	8	7	24	23	24	23	8	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2663987726	6	115744236	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	115744236	115744246	1	32	532.406	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	12	0	0	./.	7	3	7	5	26	22	26	22	7	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664001381	6	163378083	AC	A	360	PASS	PACRG	CCDS43524.1	r.?	-	-	Del	intronic	D	163378083	163378086	1	15	318.239	-	-	2	1	1	PACRG|CCDS43524.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PACRG|CCDS43524.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	2	6	4	18	18	18	18	6	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664005724	7	7477424	A	AT	420	PASS	COL28A1	CCDS43553.1	r.?	-	-	Ins	intronic	I	7477424	7477434	1	20	372.739	-	-	9	1	1	COL28A1|CCDS43553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL28A1|CCDS43553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	4	3	5	5	13	24	13	25	5	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664010230	7	24012812	TTCTC	T	780	PASS	-	-	-	-	-	Del	-	D	24012812	24012818	4	44	699.454	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	3	10	6	11	12	17	12	17	6	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664020121	7	61757354	TG	T	540	PASS	-	-	-	-	-	Del	-	D	61757354	61757357	1	28	484.654	-	-	2	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	6	3	7	4	39	30	39	30	7	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664021131	7	63817662	AC	A	300	PASS	-	-	-	-	-	Del	-	D	63817662	63817666	1	12	269.252	-	-	3	1	1	-	-	./.	0	0	0	0	24	6	24	6	0	0	./.	2	3	2	5	26	38	26	38	2	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664027855	7	81830352	A	AT	660	PASS	CACNA2D1	CCDS5598.1	r.?	-	-	Ins	intronic	I	81830352	81830354	1	42	585.732	-	-	1	1	1	CACNA2D1|CCDS5598.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA2D1|CCDS5598.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	5	6	5	7	29	37	30	37	5	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664031127	7	93302021	TTAAAG	T	260	PASS	GNGT1	ENST00000455502	r.?	-	-	Del	intronic	D	93302021	93302029	5	36	537.903	-	-	1	1	1	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	5	5	6	31	39	32	39	6	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664031345	7	94134064	C	CT	600	PASS	CASD1	ENST00000447923	r.?	-	-	Ins	upstream	I	94134064	94134073	1	36	532.484	-	-	8	1	1	CASD1|ENST00000447923|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CASD1|ENST00000447923|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	15	14	15	0	0	./.	5	5	5	6	32	33	33	33	5	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664033755	7	101526935	AGGCTGGAG	A	667	PASS	CUX1	CCDS5721.1	r.?	-	-	Del	intronic	D	101526935	101526944	8	150	1231.34	-	-	1	1	1	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	14	9	16	11	46	23	46	23	16	11	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664036100	7	108555018	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	108555018	108555028	1	15	314.072	-	-	9	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	2	4	7	5	46	42	46	43	7	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664037740	7	113786711	T	TA	660	PASS	FOXP2	ENST00000484307	r.?	-	-	Ins	intronic	I	113786711	113786718	1	36	585.732	-	-	6	1	1	FOXP2|ENST00000484307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FOXP2|ENST00000484307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	19	12	20	0	0	./.	8	3	8	4	45	31	45	31	8	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664040258	7	122527551	CT	C	540	PASS	CADPS2	CCDS47691.1	r.?	-	-	Del	upstream	D	122527551	122527554	1	30	482.848	-	-	2	1	1	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	11	13	11	0	0	./.	4	5	7	5	34	27	34	27	7	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664044668	7	135814721	CT	C	300	PASS	-	-	-	-	-	Del	-	D	135814721	135814730	1	12	269.252	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	6	2	37	20	37	20	6	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664048522	7	147694660	A	AT	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	147694660	147694661	1	12	266.242	-	-	0	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	4	5	23	27	24	27	4	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664049170	7	149481969	AG	A	480	PASS	SSPO	ENST00000378016	r.2760delG	c.2760delG	p.A921fs*103	Del	frameshift	D	149481969	149481974	1	24	429.6	-	-	4	1	1	SSPO|ENST00000378016|r.2760delG|c.2760delG|p.A921fs*103|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SSPO|ENST00000378016|r.2760delG|c.2760delG|p.A921fs*103|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	10	5	10	0	0	./.	3	5	4	6	17	25	17	25	4	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664049579	7	150474582	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	150474582	150474590	1	12	265.64	-	-	7	1	-	-	-	./.	0	0	0	0	21	12	23	12	0	0	./.	3	2	4	4	29	30	29	30	4	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664052616	8	450144	AG	A	600	PASS	C8orf42	CCDS47759.1	r.?	-	-	Del	intronic	D	450144	450146	1	36	538.172	-	-	1	1	1	C8orf42|CCDS47759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf42|CCDS47759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	5	5	7	6	28	30	28	30	7	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664059407	8	19483973	TA	T	420	PASS	CSGALNACT1	CCDS6010.1	r.?	-	-	Del	intronic	D	19483973	19483978	1	18	376.721	-	-	4	1	1	CSGALNACT1|CCDS6010.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CSGALNACT1|CCDS6010.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	2	5	4	8	25	32	25	32	4	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664063011	8	30366757	T	TCTTC	869	PASS	RBPMS	CCDS6077.1	r.?	-	-	Ins	intronic	I	30366757	30366768	4	60	765.716	-	-	2	1	-	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	22	20	23	0	0	./.	11	4	16	6	37	23	37	24	16	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664064326	8	34907250	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	34907250	34907259	1	18	372.506	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	5	2	7	3	34	19	35	19	7	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664066620	8	47556116	T	TTG	1800	PASS	-	-	-	-	-	Ins	-	I	47556116	47556122	2	256	1577.79	-	-	2	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	15	15	17	22	29	43	29	44	17	22	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664066941	8	49500210	AG	A	689	PASS	-	-	-	-	-	Del	-	D	49500210	49500215	1	33	640.99	-	-	4	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	10	5	10	23	46	23	46	5	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664068776	8	56016445	A	ATG	420	PASS	XKR4	CCDS34893.1	r.?	-	-	Ins	intronic	I	56016445	56016447	2	20	363.475	-	-	0	1	-	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	4	3	8	6	34	22	34	22	8	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664072278	8	68625853	GC	G	300	PASS	CPA6	CCDS6200.1	r.?	-	-	Del	intronic	D	68625853	68625857	1	12	269.086	-	-	3	1	1	CPA6|CCDS6200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPA6|CCDS6200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	2	3	5	3	37	32	37	32	5	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664072476	8	69130126	G	GTCTGAGGTTCTGCAAGAATCTTAGACAACTCTGGAAAAAGGGAAGTCTACGGAGTAATCTGCAGGCACCAT	290	PASS	PREX2	CCDS6201.1	r.?	-	-	Ins	intronic	I	69130126	69130194	71	27	110.71	-	-	0	1	1	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	26	29	26	0	0	./.	8	2	0	0	79	74	89	77	8	2	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664072595	8	69517945	GGGCTT	G	598	PASS	C8orf34	CCDS6203.1	r.?	-	-	Del	intronic	D	69517945	69517952	5	42	591.99	-	-	1	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	6	5	6	6	43	47	43	47	6	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664076481	8	81654062	CA	C	480	PASS	ZNF704	CCDS34913.1	r.?	-	-	Del	intronic	D	81654062	81654068	1	25	429.334	-	-	5	1	1	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	4	4	10	6	47	39	47	39	10	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664076761	8	82600039	T	TAG	435	PASS	IMPA1	CCDS47883.1	r.?	-	-	Ins	upstream	I	82600039	82600051	2	9	420.905	-	-	5	1	1	IMPA1|CCDS47883.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	IMPA1|CCDS47883.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	14	3	14	3	0	0	./.	8	0	15	1	67	37	67	38	15	1	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664082414	8	100475424	CCTT	C	540	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100475424	100475434	3	30	484.355	-	-	3	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	4	5	6	5	45	48	45	48	6	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664082434	8	100549085	ACTAAACTTTAAGAATTTT	A	406	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100549085	100549105	18	63	752.839	-	-	1	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR875|ENST00000401250|r.1_4delUUAG|-|-|non_protein_coding:exon:deletion:2KB_upstream_variant:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001636:SO:0001619	./.	0	0	0	0	12	13	12	13	0	0	./.	6	8	5	8	44	52	45	52	6	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664085926	8	110440632	G	GA	805	PASS	PKHD1L1	CCDS47911.1	r.?	-	-	Ins	intronic	I	110440632	110440640	1	80	851.443	-	-	7	1	1	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	12	0	0	./.	9	7	14	10	56	52	56	52	14	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664091769	8	127766838	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	127766838	127766847	1	28	478.937	-	-	8	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	6	3	9	5	48	56	48	56	9	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664094868	8	138019570	TTA	T	360	PASS	-	-	-	-	-	Del	-	D	138019570	138019573	2	16	322.903	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	3	3	4	46	43	46	43	3	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664095759	8	140276392	CA	C	509	PASS	-	-	-	-	-	Del	-	D	140276392	140276400	1	28	480.743	-	-	7	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	6	3	7	3	48	41	48	41	7	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664097273	8	145961863	TA	T	389	PASS	ZNF251	CCDS47944.1	r.?	-	-	Del	intronic	D	145961863	145961865	1	18	376.119	-	-	1	1	-	ZNF251|CCDS47944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF251|CCDS47944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	2	5	6	6	26	43	26	43	6	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664097836	9	1040668	TG	T	420	PASS	-	-	-	-	-	Del	-	D	1040668	1040673	1	20	377.926	-	-	4	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	3	6	3	20	17	20	17	6	3	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664099154	9	6306752	C	CCTAT	538	PASS	-	-	-	-	-	Ins	-	I	6306752	6306757	4	32	514.006	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	7	6	9	31	41	33	41	6	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664102821	9	17556353	AAG	A	267	PASS	-	-	-	-	-	Del	-	D	17556353	17556357	2	7	305.273	-	-	1	1	-	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	6	0	4	0	27	31	27	31	6	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664104024	9	21985224	ATACT	A	629	PASS	-	-	-	-	-	Del	-	D	21985224	21985229	4	42	592.68	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	5	6	6	9	36	35	36	35	6	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664115882	9	79305731	CTTG	C	300	PASS	PRUNE2	CCDS47982.1	r.?	-	-	Del	intronic	D	79305731	79305740	3	12	269.947	-	-	2	1	1	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	3	2	5	4	19	29	19	29	5	4	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664117205	9	84187774	GTAAAA	G	567	PASS	-	-	-	-	-	Del	-	D	84187774	84187788	5	42	591.476	-	-	2	1	-	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	5	6	7	10	16	32	16	32	7	10	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664129227	9	125463868	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	125463868	125463878	1	28	473.864	-	-	9	1	1	-	-	./.	0	0	0	0	18	17	18	18	0	0	./.	3	6	7	8	21	31	21	31	7	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664133823	9	141071520	GTGTCTCAGAGCAGTTTACAGCAA	G	276	PASS	-	-	-	-	-	Del	-	D	141071520	141071547	23	11	537.487	-	-	1	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	10	0	8	0	29	24	31	24	10	0	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664135868	X	8454651	GAA	G	337	PASS	ENSG00000227978	ENST00000418307	r.?	-	-	Del	intronic	D	8454651	8454655	2	7	323.14	-	-	3	1	-	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	0	6	1	9	33	25	35	25	1	9	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664138583	X	20190629	G	GA	600	PASS	RPS6KA3	CCDS14197.1	r.?	-	-	Ins	intronic	I	20190629	20190638	1	35	528.732	-	-	8	1	1	RPS6KA3|CCDS14197.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPS6KA3|CCDS14197.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	6	4	8	5	34	23	34	24	8	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664141037	X	29095357	G	GA	298	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29095357	29095363	1	15	320.129	-	-	5	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	2	4	7	6	20	28	21	29	7	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664149535	X	74828854	C	CA	569	PASS	-	-	-	-	-	Ins	-	I	74828854	74828860	1	32	525.12	-	-	5	1	1	-	-	./.	0	0	0	0	21	10	22	10	0	0	./.	7	3	7	5	36	28	36	28	7	5	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664150590	X	79901760	TTC	T	600	PASS	-	-	-	-	-	Del	-	D	79901760	79901764	2	27	538.967	-	-	1	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	2	8	4	8	16	34	16	34	4	8	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664154926	X	96426783	C	CA	316	PASS	DIAPH2	CCDS14467.1	r.?	-	-	Ins	intronic	I	96426783	96426790	1	24	422.625	-	-	6	1	1	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	1	13	1	13	0	0	./.	3	5	3	6	11	21	11	21	3	6	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664157212	X	106757149	A	AAT	420	PASS	-	-	-	-	-	Ins	-	I	106757149	106757157	2	20	365.657	-	-	3	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	4	4	7	25	26	27	26	4	7	1	1	1	1	1	1	1	1
2576042	PD6701a2	PD6701b	2664162105	X	126058644	G	GT	306	PASS	-	-	-	-	-	Ins	-	I	126058644	126058652	1	7	318.925	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	0	6	2	8	31	27	32	28	2	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688152108	1	6397568	AT	A	629	PASS	ACOT7	CCDS30573.1	r.?	-	-	Del	intronic	D	6397568	6397571	1	42	590.245	-	-	2	1	1	ACOT7|CCDS30573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOT7|CCDS30573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	6	5	6	7	21	23	21	23	6	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688159068	1	29139328	C	CG	660	PASS	OPRD1	CCDS329.1	r.?	-	-	Ins	intronic	I	29139328	29139338	1	42	570.979	-	-	9	1	1	OPRD1|CCDS329.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OPRD1|CCDS329.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	9	7	0	0	./.	6	5	6	8	24	30	24	30	6	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688160914	1	36849693	T	TGG	509	PASS	STK40	CCDS407.1	r.?	-	-	Ins	intronic	I	36849693	36849695	2	28	458.736	-	-	1	1	1	STK40|CCDS407.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	STK40|CCDS407.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	5	10	6	0	0	./.	6	3	9	6	35	24	35	24	9	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688168320	1	64586074	T	TA	720	PASS	ROR1	CCDS626.1	r.?	-	-	Ins	intronic	I	64586074	64586080	1	48	636.734	-	-	5	1	1	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	5	7	7	9	21	44	22	44	7	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688174941	1	89503386	GTCCCAAATATGAAGAA	G	725	PASS	AL160008.2	ENST00000498904	r.?	-	-	Del	intronic	D	89503386	89503408	16	176	1342.83	-	-	1	1	1	AL160008.2|ENST00000498904|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL160008.2|ENST00000498904|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	15	10	13	10	28	19	30	19	15	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688181108	1	112651238	CT	C	329	PASS	-	-	-	-	-	Del	-	D	112651238	112651243	1	12	322.28	-	-	4	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	1	5	2	9	30	32	30	32	2	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688190740	1	159500634	G	GA	480	PASS	OR10J5	CCDS30910.1	r.?	-	-	Ins	downstream	I	159500634	159500640	1	21	424.89	-	-	5	1	1	OR10J5|CCDS30910.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	OR10J5|CCDS30910.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	10	17	10	0	0	./.	6	2	8	3	62	48	63	48	8	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688191937	1	163275546	CCTT	C	805	PASS	-	-	-	-	-	Del	-	D	163275546	163275550	3	77	859.414	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	10	8	15	33	38	33	38	8	15	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688196907	1	181183160	TC	T	420	PASS	-	-	-	-	-	Del	-	D	181183160	181183162	1	8	367.565	-	-	1	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	7	0	10	0	43	36	43	36	10	0	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688197859	1	184765282	CAA	C	540	PASS	FAM129A	CCDS1364.1	r.?	-	-	Del	intronic	D	184765282	184765286	2	28	482.818	-	-	3	1	1	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	6	3	7	4	43	33	43	33	7	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688200774	1	194471475	T	TTA	269	PASS	-	-	-	-	-	Ins	-	I	194471475	194471477	2	12	254.117	-	-	0	1	-	-	-	./.	0	0	0	0	3	5	3	7	0	0	./.	3	2	4	8	26	38	26	38	4	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688202825	1	200809156	AG	A	1320	PASS	CAMSAP1L1	CCDS1404.1	r.?	-	-	Del	intronic	D	200809156	200809158	1	140	1179.89	-	-	1	1	1	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	9	13	11	17	56	37	56	37	11	17	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688212031	1	230998371	CTG	C	300	PASS	C1orf198	CCDS1587.1	r.?	-	-	Del	intronic	D	230998371	230998375	2	10	268.567	-	-	1	1	1	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	1	4	40	53	40	53	1	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688212973	1	234077700	G	GT	329	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Ins	intronic	I	234077700	234077708	1	7	316.26	-	-	7	1	-	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	6	0	0	1	68	39	68	39	6	1	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688213176	1	234735177	TATG	T	389	PASS	IRF2BP2	CCDS1602.1	r.?	-	-	Del	downstream	D	234735177	234735183	3	18	375.994	-	-	1	1	1	IRF2BP2|CCDS1602.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IRF2BP2|CCDS1602.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	11	14	11	0	0	./.	5	2	6	3	35	46	35	46	6	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688217130	1	245425763	A	AT	780	PASS	KIF26B	CCDS44342.1	r.?	-	-	Ins	intronic	I	245425763	245425773	1	56	688.641	-	-	9	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	7	6	12	9	43	41	43	41	12	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688225940	10	20050825	AC	A	1320	PASS	-	-	-	-	-	Del	-	D	20050825	20050828	1	144	1185.69	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	11	11	17	12	46	34	46	34	17	12	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688234160	10	45826744	TCA	T	569	PASS	-	-	-	-	-	Del	-	D	45826744	45826747	2	35	539.223	-	-	1	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	6	4	6	4	27	14	27	14	6	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688241054	10	71242731	T	TG	360	PASS	TSPAN15	CCDS7294.1	r.?	-	-	Ins	intronic	I	71242731	71242732	1	15	319.921	-	-	0	1	-	TSPAN15|CCDS7294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSPAN15|CCDS7294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	4	4	10	27	38	27	38	4	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688243284	10	80751034	TAAAAC	T	267	PASS	-	-	-	-	-	Del	-	D	80751034	80751044	5	15	323.534	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	2	4	2	6	23	34	23	34	2	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688243348	10	81055506	CT	C	1020	PASS	ZMIZ1	CCDS7357.1	r.?	-	-	Del	intronic	D	81055506	81055508	1	84	911.26	-	-	1	1	1	ZMIZ1|CCDS7357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZMIZ1|CCDS7357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	6	11	7	11	36	34	36	34	7	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688245728	10	89624241	C	CA	780	PASS	ENSG00000227268	CCDS44454.1	r.?	-	-	Ins	upstream	I	89624241	89624245	1	54	691.959	-	-	3	1	1	ENSG00000227268|CCDS44454.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PTEN|ENST00000371953|r.1372_1373insa|c.15_16insA|p.E7fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	10	13	10	13	0	0	./.	8	5	11	7	38	23	39	24	11	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688246715	10	93521283	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	93521283	93521290	1	42	582.91	-	-	6	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	6	5	8	7	34	36	36	36	8	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688247388	10	95235798	CTGA	C	538	PASS	MYOF	CCDS41551.1	r.?	-	-	Del	intronic	D	95235798	95235803	3	20	539.223	-	-	1	1	1	MYOF|CCDS41551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYOF|CCDS41551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	1	9	1	10	15	33	15	33	1	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688258778	10	133348029	GT	G	1020	PASS	-	-	-	-	-	Del	-	D	133348029	133348031	1	88	916.679	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	10	7	11	9	33	29	33	29	11	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688263599	11	12749073	A	AT	600	PASS	TEAD1	CCDS7810.1	r.?	-	-	Ins	intronic	I	12749073	12749080	1	35	533.618	-	-	6	1	1	TEAD1|CCDS7810.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TEAD1|CCDS7810.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	6	4	11	10	33	35	35	35	11	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688277148	11	62211951	GCT	G	660	PASS	AHNAK	CCDS44625.1	r.?	-	-	Del	intronic	D	62211951	62211956	2	36	594.265	-	-	2	1	1	AHNAK|CCDS44625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHNAK|CCDS44625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	13	21	13	0	0	./.	8	3	9	4	28	17	28	17	9	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688283734	11	86872707	GA	G	900	PASS	TMEM135	CCDS8280.1	r.?	-	-	Del	intronic	D	86872707	86872710	1	70	808.555	-	-	2	1	1	TMEM135|CCDS8280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM135|CCDS8280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	9	6	10	8	28	24	28	24	10	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688289675	11	106740833	A	AG	383	PASS	GUCY1A2	CCDS8335.1	r.?	-	-	Ins	intronic	I	106740833	106740843	1	20	367.331	-	-	9	1	1	GUCY1A2|CCDS8335.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GUCY1A2|CCDS8335.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	4	3	6	1	26	15	26	15	6	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688290148	11	108010367	ATG	A	360	PASS	ACAT1	CCDS8339.1	r.?	-	-	Del	intronic	D	108010367	108010379	2	15	324.144	-	-	5	1	1	ACAT1|CCDS8339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACAT1|CCDS8339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	2	4	3	9	25	38	25	38	3	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688296897	11	131513270	AC	A	480	PASS	OPCML	CCDS41733.1	r.?	-	-	Del	intronic	D	131513270	131513274	1	25	432.193	-	-	3	1	1	OPCML|CCDS41733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPCML|CCDS41733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	9	3	9	0	0	./.	4	4	6	9	21	30	21	30	6	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688297264	11	133330543	T	TA	540	PASS	ENSG00000183715	CCDS31722.1	r.?	-	-	Ins	intronic	I	133330543	133330550	1	30	477.788	-	-	6	1	1	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	5	5	7	36	28	36	28	5	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688311092	12	44489128	A	AT	360	PASS	TMEM117	CCDS8745.1	r.?	-	-	Ins	intronic	I	44489128	44489135	1	12	320.613	-	-	6	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	15	0	0	./.	5	1	7	1	40	33	40	33	7	1	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688318050	12	70023817	CT	C	1080	PASS	-	-	-	-	-	Del	-	D	70023817	70023819	1	91	972.677	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	12	8	15	27	39	27	39	8	15	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688343382	13	40127893	TC	T	780	PASS	LHFP	CCDS9369.1	r.?	-	-	Del	intronic	D	40127893	40127896	1	36	703.596	-	-	2	1	1	LHFP|CCDS9369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFP|CCDS9369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	11	2	11	22	23	22	23	2	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688360837	13	98033889	A	AT	300	PASS	MBNL2	CCDS9484.1	r.?	-	-	Ins	intronic	I	98033889	98033897	1	12	267.603	-	-	7	1	1	MBNL2|CCDS9484.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBNL2|CCDS9484.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	3	5	26	41	26	41	3	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688379058	14	62485013	CTTCTTTTTTTTTTTTTTT	C	290	PASS	SYT16	CCDS45121.1	r.?	-	-	Del	intronic	D	62485013	62485034	18	35	531.647	-	-	1	1	-	SYT16|CCDS45121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT16|CCDS45121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	8	3	8	0	0	./.	4	6	5	7	18	26	18	26	6	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688382399	14	74642451	A	ACACACACACC	319	PASS	LIN52	CCDS32120.1	r.?	-	-	Ins	intronic	I	74642451	74642455	10	30	514.792	-	-	0	1	-	LIN52|CCDS32120.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIN52|CCDS32120.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	7	8	0	0	./.	2	9	3	5	24	25	24	29	3	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688385980	14	86656590	CT	C	809	PASS	-	-	-	-	-	Del	-	D	86656590	86656598	1	60	755.625	-	-	7	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	9	5	11	8	31	30	31	30	11	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688400813	15	48711395	C	CT	840	PASS	FBN1	CCDS32232.1	r.?	-	-	Ins	intronic	I	48711395	48711398	1	55	751.043	-	-	2	1	1	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	10	4	13	9	43	31	43	31	13	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688407783	15	71633456	T	TTTTCTTTTTTCTTTTGTTGCCTTGCCTTTTCTTTTCTATTGTCTCTTCTGTCTTCCCTCTCTCTCCC	269	PASS	THSD4	CCDS10238.2	r.?	-	-	Ins	intronic	I	71633456	71633460	67	10	69.5499	-	-	0	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	12	10	0	0	./.	4	1	0	0	39	34	39	35	4	1	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688408613	15	74833615	C	CCGGGGCCTGAGCTGCCGCCT	261	PASS	ARID3B	CCDS10264.1	r.70_71inscggggccugagcugccgccu	c.?	p.?	Ins	5'UTR variant	I	74833615	74833637	20	28	377.453	-	-	1	1	1	ARID3B|CCDS10264.1|r.70_71inscggggccugagcugccgccu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	ARID3B|CCDS10264.1|r.70_71inscggggccugagcugccgccu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	9	3	9	3	0	0	./.	6	3	2	0	24	12	28	15	6	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688416568	16	665961	C	CA	840	PASS	RAB40C	CCDS10413.1	r.?	-	-	Ins	intronic	I	665961	665968	1	55	735.774	-	-	6	1	1	RAB40C|CCDS10413.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB40C|CCDS10413.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	10	4	12	5	40	27	40	27	12	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688422084	16	16731935	CT	C	356	PASS	-	-	-	-	-	Del	-	D	16731935	16731937	1	11	541.12	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	10	0	12	0	57	47	57	47	12	0	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688427831	16	33821100	GTGAAATGA	G	319	PASS	-	-	-	-	-	Del	-	D	33821100	33821131	8	30	594.75	-	-	3	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	9	2	11	4	33	29	33	29	11	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688433943	16	66318927	C	CCT	298	PASS	-	-	-	-	-	Ins	-	I	66318927	66318947	2	15	312.751	-	-	9	1	-	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	4	2	7	16	16	16	16	2	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688451461	17	35879305	CTGA	C	565	PASS	SYNRG	CCDS11321.1	r.?	-	-	Del	intronic	D	35879305	35879309	3	49	650.541	-	-	1	1	1	SYNRG|CCDS11321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYNRG|CCDS11321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	6	6	7	9	22	37	22	37	7	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688455047	17	47489168	C	CG	660	PASS	PHB	CCDS11548.1	r.194_195insc	c.121_122insC	p.R41fs*28	Ins	frameshift	I	47489168	47489171	1	40	584.288	-	-	2	1	1	PHB|CCDS11548.1|r.194_195insc|c.121_122insC|p.R41fs*28|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	PHB|CCDS11548.1|r.194_195insc|c.121_122insC|p.R41fs*28|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	6	9	6	9	0	0	./.	7	4	7	6	24	18	25	18	7	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688466568	18	2767091	C	CA	540	PASS	ENSG00000101596	CCDS45822.1	r.?	-	-	Ins	intronic	I	2767091	2767098	1	30	482.68	-	-	6	1	1	ENSG00000101596|CCDS45822.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000101596|CCDS45822.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	11	8	0	0	./.	5	4	9	4	25	21	25	21	9	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688481687	18	60830889	G	GA	780	PASS	BCL2	CCDS11981.1	r.?	-	-	Ins	intronic	I	60830889	60830898	1	54	697.204	-	-	8	1	1	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	8	7	9	32	34	34	34	7	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688484680	18	69530036	AG	A	420	PASS	-	-	-	-	-	Del	-	D	69530036	69530039	1	18	379.632	-	-	2	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	5	6	11	22	30	22	30	6	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688488926	19	4578513	AAAATCCAGGAGATCACTTG	A	435	PASS	-	-	-	-	-	Del	-	D	4578513	4578533	19	70	814.243	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	9	6	9	7	26	30	26	30	9	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688498047	19	32497008	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	32497008	32497016	1	15	322.085	-	-	7	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	4	3	7	19	30	19	30	3	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688500006	19	38078260	G	GT	600	PASS	ZNF571	CCDS12505.1	r.?	-	-	Ins	intronic	I	38078260	38078268	1	35	536.808	-	-	7	1	1	ZNF571|CCDS12505.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF571|CCDS12505.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	6	10	6	35	32	37	32	10	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688501904	19	44583859	C	CA	660	PASS	ZNF284	CCDS46099.1	r.?	-	-	Ins	intronic	I	44583859	44583868	1	42	589.887	-	-	8	1	-	ZNF284|CCDS46099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF284|CCDS46099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	6	5	8	8	25	42	25	42	8	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688502103	19	45090978	A	AAG	418	PASS	-	-	-	-	-	Ins	-	I	45090978	45090988	2	9	424.63	-	-	4	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	8	0	1	1	29	20	29	20	9	1	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688509471	2	6297589	GAC	G	329	PASS	-	-	-	-	-	Del	-	D	6297589	6297592	2	12	320.905	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	1	0	0	28	21	28	21	5	1	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688529852	2	81420843	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	81420843	81420850	1	15	318.496	-	-	6	1	1	-	-	./.	0	0	0	0	6	8	7	8	0	0	./.	2	4	5	5	26	23	27	23	5	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688535682	2	106038679	CT	C	660	PASS	FHL2	CCDS2070.1	r.?	-	-	Del	intronic	D	106038679	106038683	1	40	591.636	-	-	3	1	1	FHL2|CCDS2070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FHL2|CCDS2070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	7	4	17	4	35	28	35	28	17	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688536619	2	109366923	A	ACT	273	PASS	RANBP2	CCDS2079.1	r.?	-	-	Ins	intronic	I	109366923	109366924	2	11	525.81	-	-	0	1	1	RANBP2|CCDS2079.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RANBP2|CCDS2079.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	10	0	11	0	44	20	45	20	11	0	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688536957	2	110978068	CAGG	C	329	PASS	-	-	-	-	-	Del	-	D	110978068	110978074	3	12	322.711	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	1	9	2	21	34	21	34	9	2	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688538129	2	116123719	TA	T	660	PASS	DPP10	CCDS46400.1	r.?	-	-	Del	intronic	D	116123719	116123721	1	40	591.636	-	-	1	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	4	9	6	25	16	25	16	9	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688541722	2	129063981	AC	A	480	PASS	HS6ST1	CCDS42748.1	r.?	-	-	Del	intronic	D	129063981	129063986	1	24	429.077	-	-	4	1	1	HS6ST1|CCDS42748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST1|CCDS42748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	3	5	4	6	13	17	13	17	4	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688543562	2	133518176	A	AT	720	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Ins	intronic	I	133518176	133518183	1	45	635.789	-	-	6	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	8	4	11	5	36	24	36	24	11	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688564594	2	212649078	TTA	T	809	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	212649078	212649082	2	63	752.992	-	-	1	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	8	6	13	6	37	25	37	25	13	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688575691	20	5796928	A	AT	389	PASS	C20orf196	CCDS13091.1	r.?	-	-	Ins	intronic	I	5796928	5796937	1	20	374.559	-	-	8	1	1	C20orf196|CCDS13091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C20orf196|CCDS13091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	4	3	7	5	42	21	42	21	7	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688590883	20	60919219	AG	A	360	PASS	LAMA5	CCDS33502.1	r.?	-	-	Del	intronic	D	60919219	60919221	1	7	309.353	-	-	1	1	1	LAMA5|CCDS33502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMA5|CCDS33502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	6	0	14	0	24	13	24	13	14	0	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688604981	21	44164921	CAA	C	480	PASS	PDE9A	CCDS13690.1	r.?	-	-	Del	intronic	D	44164921	44164925	2	24	435.409	-	-	3	1	1	PDE9A|CCDS13690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE9A|CCDS13690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	5	3	5	6	16	23	16	23	5	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688607240	22	18135203	T	TA	718	PASS	BCL2L13	CCDS13746.1	r.?	-	-	Ins	intronic	I	18135203	18135205	1	50	701.921	-	-	1	1	1	BCL2L13|CCDS13746.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BCL2L13|CCDS13746.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	14	7	0	0	./.	9	4	9	7	32	33	35	33	9	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688621622	3	13460829	G	GCC	327	PASS	NUP210	CCDS33704.1	r.?	-	-	Ins	intronic	I	13460829	13460831	2	18	368.72	-	-	1	1	1	NUP210|CCDS33704.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUP210|CCDS33704.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	5	5	6	18	30	19	30	5	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688622213	3	15789071	ATAT	AG	356	PASS	ANKRD28	CCDS46769.1	r.?	-	-	Complex	intronic	DI	15789072	15789074	3	21	0	-	-	0	1	1	ANKRD28|CCDS46769.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ANKRD28|CCDS46769.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	2	0	0	31	36	31	36	6	2	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688630701	3	48487538	G	GA	720	PASS	ATRIP	CCDS2768.1	r.?	-	-	Ins	upstream	I	48487538	48487548	1	45	637.51	-	-	9	1	1	ATRIP|CCDS2768.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ATRIP|CCDS2768.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	6	16	6	16	0	0	./.	4	8	6	10	21	36	22	36	6	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688636763	3	72039894	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	72039894	72039904	1	50	685.97	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	9	5	12	27	33	27	33	5	12	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688641633	3	86442960	TA	T	480	PASS	-	-	-	-	-	Del	-	D	86442960	86442970	1	24	431.027	-	-	9	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	3	6	5	25	22	25	22	6	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688643422	3	96163260	TTCA	T	300	PASS	-	-	-	-	-	Del	-	D	96163260	96163265	3	12	269.392	-	-	1	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	2	3	2	35	40	35	40	3	2	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688643741	3	98062075	TCC	T	600	PASS	-	-	-	-	-	Del	-	D	98062075	98062079	2	32	537.58	-	-	3	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	7	3	8	4	37	26	37	26	8	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688647765	3	113323537	TTC	T	660	PASS	SIDT1	CCDS2974.1	r.?	-	-	Del	intronic	D	113323537	113323541	2	42	592.662	-	-	1	1	1	SIDT1|CCDS2974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIDT1|CCDS2974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	5	6	8	8	32	22	32	22	8	8	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688694903	4	81852892	A	ACACG	447	PASS	C4orf22	CCDS3587.1	r.?	-	-	Ins	intronic	I	81852892	81852894	4	24	455.752	-	-	0	1	-	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	7	4	7	26	31	27	31	4	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688698736	4	95494893	TTTAA	T	389	PASS	PDLIM5	CCDS3641.1	r.?	-	-	Del	intronic	D	95494893	95494899	4	20	376.951	-	-	1	1	1	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	15	5	15	0	0	./.	4	3	5	3	30	36	30	36	5	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688708027	4	132170700	TC	T	480	PASS	-	-	-	-	-	Del	-	D	132170700	132170703	1	21	430.801	-	-	2	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	6	2	6	4	38	31	38	31	6	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688708034	4	132232416	G	GT	960	PASS	-	-	-	-	-	Ins	-	I	132232416	132232425	1	81	851.367	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	17	0	0	./.	8	8	10	11	38	29	38	30	10	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688713424	4	151363276	CTCAGATTTTTTACAAAGCAGAGATTT	C	348	PASS	LRBA	CCDS3773.1	r.?	-	-	Del	intronic	D	151363276	151363303	26	45	646.202	-	-	1	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	8	4	7	4	34	30	35	30	8	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688713519	4	151772206	G	GTAA	329	PASS	LRBA	CCDS3773.1	r.?	-	-	Ins	intronic	I	151772206	151772213	3	15	310.458	-	-	2	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	10	12	0	0	./.	4	2	4	2	35	29	38	29	4	2	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688715630	4	159124200	C	CCT	298	PASS	TMEM144	ENST00000505189	r.?	-	-	Ins	intronic	I	159124200	159124201	2	12	314.07	-	-	0	1	-	TMEM144|ENST00000505189|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMEM144|ENST00000505189|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	1	5	0	0	34	15	34	15	1	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688716429	4	161645417	A	AT	749	PASS	-	-	-	-	-	Ins	-	I	161645417	161645425	1	56	692.225	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	6	7	8	10	32	45	32	45	8	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688721438	4	177553682	G	GGT	267	PASS	-	-	-	-	-	Ins	-	I	177553682	177553683	2	12	308.049	-	-	0	1	1	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	1	5	0	0	33	38	34	38	1	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688725260	4	188061027	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	188061027	188061033	1	20	372.135	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	3	6	6	25	20	26	20	6	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688736427	5	29239490	TTTCTTTCTTTCTTTCTTTC	T	267	PASS	-	-	-	-	-	Del	-	D	29239490	29239512	19	15	323.639	-	-	1	1	-	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	2	4	0	0	17	21	17	21	2	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688736698	5	29717791	ATG	A	540	PASS	-	-	-	-	-	Del	-	D	29717791	29717795	2	30	485.458	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	5	4	7	7	29	27	29	27	7	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688747407	5	74801890	TATTTTTCAAAA	T	290	PASS	COL4A3BP	CCDS47235.1	r.815_825delUUUUGAAAAAU	c.521_531delTTTTGAAAAAT	p.V174fs*9	Del	frameshift	D	74801890	74801902	11	27	539.398	-	-	1	1	1	COL4A3BP|CCDS47235.1|r.815_825delUUUUGAAAAAU|c.521_531delTTTTGAAAAAT|p.V174fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	COL4A3BP|CCDS47235.1|r.815_825delUUUUGAAAAAU|c.521_531delTTTTGAAAAAT|p.V174fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	11	7	11	0	0	./.	2	8	2	9	22	33	22	33	2	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688753812	5	99618468	CAG	C	488	PASS	-	-	-	-	-	Del	-	D	99618468	99618471	2	30	485.458	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	4	6	7	17	22	17	22	6	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688755388	5	105554933	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	105554933	105554943	1	48	638.849	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	7	7	7	34	30	36	30	7	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688761372	5	127932186	G	GT	600	PASS	FBN2	ENST00000508053	r.?	-	-	Ins	intronic	I	127932186	127932188	1	36	533.378	-	-	1	1	1	FBN2|ENST00000508053|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FBN2|ENST00000508053|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	5	5	6	7	43	27	44	27	6	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688762008	5	131131887	TC	T	480	PASS	FNIP1	CCDS34226.1	r.?	-	-	Del	intronic	D	131131887	131131890	1	25	430.916	-	-	2	1	1	FNIP1|CCDS34226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNIP1|CCDS34226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	4	6	11	35	32	35	32	6	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688763613	5	137951578	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	137951578	137951586	1	40	640.053	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	9	5	10	25	27	26	27	5	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688770575	5	165658047	AG	A	840	PASS	-	-	-	-	-	Del	-	D	165658047	165658050	1	63	754.555	-	-	2	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	8	9	15	31	42	31	42	9	15	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688781970	6	22150837	AAAAT	A	300	PASS	AL008732.1	ENST00000511541	r.?	-	-	Del	upstream	D	22150837	22150843	4	12	269.945	-	-	1	1	1	AL008732.1|ENST00000511541|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AL008732.1|ENST00000511541|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	20	8	20	8	0	0	./.	2	3	3	4	18	13	18	13	3	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688788167	6	40622839	GCTGGTAATAATGATAGTGATGATGATGGTGAAGATCATGATGATGTT	GGTGGTAATAGTGATGGTGGTGAAGATGATGATGATGGC	261	PASS	-	-	-	-	-	Complex	-	DI	40622840	40622886	47	28	0	-	-	0	1	-	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	3	0	0	39	44	39	44	6	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688797197	6	72026201	T	TATATACACACATATATGTATATATAC	333	PASS	-	-	-	-	-	Ins	-	I	72026201	72026205	26	28	345.02	-	-	0	1	-	-	-	./.	0	0	0	0	17	12	18	12	0	0	./.	3	6	0	0	23	27	31	33	3	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688799053	6	79194496	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	79194496	79194504	1	84	959.763	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	13	5	14	9	36	29	36	29	14	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688820300	6	164864721	T	TTG	360	PASS	-	-	-	-	-	Ins	-	I	164864721	164864722	2	15	316.71	-	-	0	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	4	2	5	19	14	21	14	2	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688833431	7	38613252	G	GT	300	PASS	AMPH	CCDS5456.1	r.?	-	-	Ins	intronic	I	38613252	38613259	1	12	266.729	-	-	6	1	1	AMPH|CCDS5456.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AMPH|CCDS5456.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	2	3	2	3	30	24	30	25	2	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688842659	7	67590207	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	67590207	67590217	1	12	266.729	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	2	3	19	42	19	42	2	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688855142	7	112461889	AG	A	840	PASS	C7orf60	CCDS43634.1	r.1293delC	c.1127delC	p.P376fs*22	Del	frameshift	D	112461889	112461893	1	55	755.271	-	-	3	1	1	C7orf60|CCDS43634.1|r.1293delC|c.1127delC|p.P376fs*22|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	C7orf60|CCDS43634.1|r.1293delC|c.1127delC|p.P376fs*22|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	7	8	7	0	0	./.	4	10	6	13	26	35	26	35	6	13	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688855464	7	114107550	CCAAA	C	627	PASS	FOXP2	CCDS43635.1	r.?	-	-	Del	intronic	D	114107550	114107559	4	48	646.773	-	-	2	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	7	5	7	7	17	19	17	19	7	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688860622	7	132118633	AG	A	780	PASS	PLXNA4	CCDS43646.1	r.?	-	-	Del	intronic	D	132118633	132118640	1	50	701.323	-	-	6	1	1	PLXNA4|CCDS43646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA4|CCDS43646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	4	9	6	13	23	35	23	35	6	13	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688860871	7	133023376	AAT	A	418	PASS	EXOC4	CCDS5829.1	r.?	-	-	Del	intronic	D	133023376	133023379	2	24	403.287	-	-	1	1	-	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	5	3	6	6	35	19	35	19	8	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688861446	7	135092449	G	GGT	1169	PASS	CNOT4	CCDS47719.1	r.?	-	-	Ins	intronic	I	135092449	135092450	2	112	1054.27	-	-	0	1	1	CNOT4|CCDS47719.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNOT4|CCDS47719.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	3	6	4	0	0	./.	13	7	0	0	42	26	42	26	13	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688864104	7	144703898	TC	T	778	PASS	-	-	-	-	-	Del	-	D	144703898	144703902	1	60	755.271	-	-	3	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	9	5	14	11	47	39	47	39	14	11	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688881102	8	39504255	GAAATATAC	G	261	PASS	ADAM18	CCDS6113.1	r.?	-	-	Del	intronic	D	39504255	39504265	8	28	486.058	-	-	1	1	1	ADAM18|CCDS6113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM18|CCDS6113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	6	3	6	4	26	37	26	37	6	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688884354	8	56303590	C	CA	960	PASS	XKR4	CCDS34893.1	r.?	-	-	Ins	intronic	I	56303590	56303599	1	77	854.47	-	-	8	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	10	6	14	10	49	35	49	35	14	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688886351	8	64959060	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	64959060	64959068	1	16	320.426	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	4	4	27	31	28	31	4	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688904933	8	137111848	GT	G	900	PASS	-	-	-	-	-	Del	-	D	137111848	137111858	1	42	810.096	-	-	9	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	13	2	14	5	31	18	31	18	14	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688917636	9	35883863	A	ATG	295	PASS	-	-	-	-	-	Ins	-	I	35883863	35883865	2	16	422.914	-	-	0	1	-	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	1	7	0	0	30	39	30	39	1	7	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688918197	9	37573608	CCCCATTGGAATGTATAAGCCCCCAGAGAGG	C	580	PASS	FBXO10	CCDS47966.1	r.?	-	-	Del	intronic	D	37573608	37573640	30	120	1081.37	-	-	1	1	1	FBXO10|CCDS47966.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FBXO10|CCDS47966.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	11	9	11	6	35	30	35	33	11	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688919976	9	66465852	ACTAT	A	273	PASS	-	-	-	-	-	Del	-	D	66465852	66465859	4	16	432.546	-	-	1	1	1	-	-	./.	0	0	0	0	55	34	56	34	0	0	./.	7	1	8	2	149	96	149	96	8	2	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688923687	9	74438509	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	74438509	74438510	1	12	261.913	-	-	0	1	-	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	5	3	28	26	31	26	5	3	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688941196	9	137639807	G	GCGCACATGCATTCACA	319	PASS	COL5A1	CCDS6982.1	r.?	-	-	Ins	intronic	I	137639807	137639809	16	30	486.983	-	-	0	1	-	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	9	0	0	29	67	29	67	2	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688951925	X	54386392	CTG	C	720	PASS	WNK3	CCDS35302.1	r.?	-	-	Del	upstream	D	54386392	54386395	2	48	642.893	-	-	1	1	1	WNK3|CCDS35302.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	WNK3|CCDS35302.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	9	11	9	0	0	./.	7	5	11	6	26	27	26	27	11	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688952046	X	55549816	C	CATATATGTATATATATGTATATATATACACATATGTGTGTGTACACATAT	420	PASS	-	-	-	-	-	Ins	-	I	55549816	55549823	50	18	168.163	-	-	0	1	-	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	2	5	0	0	44	37	44	38	2	5	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688952427	X	58199490	GGTT	G	540	PASS	-	-	-	-	-	Del	-	D	58199490	58199495	3	30	487.136	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	4	9	13	25	30	25	30	9	13	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688954873	X	77984908	CT	C	420	PASS	-	-	-	-	-	Del	-	D	77984908	77984916	1	18	378.884	-	-	7	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	5	5	6	26	34	26	34	5	6	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688955264	X	79441737	GT	G	660	PASS	-	-	-	-	-	Del	-	D	79441737	79441739	1	36	595.389	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	8	3	10	17	23	17	23	3	10	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688957432	X	89290296	A	AG	389	PASS	-	-	-	-	-	Ins	-	I	89290296	89290297	1	18	374.067	-	-	0	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	2	0	0	24	17	24	17	5	2	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688961368	X	112740118	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	112740118	112740126	1	24	481.718	-	-	7	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	7	2	7	4	36	25	36	25	7	4	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688963246	X	121501080	C	CA	960	PASS	-	-	-	-	-	Ins	-	I	121501080	121501088	1	77	853.979	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	10	6	12	9	39	29	39	30	12	9	1	1	1	1	1	1	1	1
2626949	PD9596a	PD9596b	2688966290	X	138049523	C	CA	720	PASS	FGF13	ENST00000370603	r.?	-	-	Ins	intronic	I	138049523	138049530	1	49	641.688	-	-	6	1	1	FGF13|ENST00000370603|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF13|ENST00000370603|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	6	6	9	11	36	29	37	29	9	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729396509	1	2574939	AG	A	1560	PASS	TTC34	ENST00000401094	r.?	-	-	Del	intronic	D	2574939	2574942	1	195	1388.95	-	-	2	1	1	TTC34|ENST00000401094|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC34|ENST00000401094|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	14	12	16	16	48	32	48	32	16	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729397486	1	5606264	ATAAAAACAAAG	A	435	PASS	-	-	-	-	-	Del	-	D	5606264	5606280	11	66	802.014	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	5	10	6	11	40	55	40	55	6	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729402568	1	15588517	GCA	G	300	PASS	FHAD1	CCDS44062.1	r.?	-	-	Del	intronic	D	15588517	15588535	2	10	258.909	-	-	8	1	-	FHAD1|CCDS44062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FHAD1|CCDS44062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	1	4	1	5	61	46	61	46	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729403464	1	16904107	G	GAAGA	493	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16904107	16904112	4	18	868.01	-	-	1	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	33	45	33	45	0	0	./.	0	17	1	20	142	198	142	199	1	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729415146	1	39852121	TG	T	360	PASS	MACF1	CCDS436.1	r.?	-	-	Del	intronic	D	39852121	39852123	1	7	309.367	-	-	1	1	1	MACF1|CCDS436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACF1|CCDS436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	6	0	7	0	32	60	32	60	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729416947	1	43450036	CTA	C	269	PASS	-	-	-	-	-	Del	-	D	43450036	43450042	2	10	257.103	-	-	2	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	4	1	9	11	30	34	31	34	9	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729418808	1	47006216	AAC	A	420	PASS	-	-	-	-	-	Del	-	D	47006216	47006230	2	18	371.865	-	-	6	1	-	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	2	5	3	44	36	44	36	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729419136	1	47818699	AAGGTGAT	A	783	PASS	CMPK1	CCDS549.1	r.?	-	-	Del	intronic	D	47818699	47818707	7	190	1443.63	-	-	1	1	1	CMPK1|CCDS549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CMPK1|CCDS549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	9	18	11	23	45	56	45	56	11	23	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729419764	1	50020047	A	AT	1200	PASS	AGBL4	CCDS44137.1	r.?	-	-	Ins	intronic	I	50020047	50020057	1	120	1053.1	-	-	9	1	1	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	11	9	15	14	40	45	43	46	15	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729422587	1	56424534	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	56424534	56424544	1	12	264.328	-	-	9	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	2	3	2	36	55	36	55	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729423042	1	57696008	A	AC	358	PASS	DAB1	CCDS607.1	r.?	-	-	Ins	intronic	I	57696008	57696009	1	20	363.436	-	-	0	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	4	3	5	28	45	30	45	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729430970	1	77115661	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	77115661	77115677	2	12	266.134	-	-	7	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	3	2	48	34	48	34	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729431253	1	77945334	ACT	A	277	PASS	AK5	CCDS676.1	r.?	-	-	Del	intronic	D	77945334	77945351	2	12	267.338	-	-	8	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	3	3	38	42	38	42	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729431415	1	78237843	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	78237843	78237858	2	15	320.806	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	1	4	51	43	51	43	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729431789	1	79042220	C	CT	300	PASS	AL136324.1	ENST00000513923	r.?	-	-	Ins	intronic	I	79042220	79042230	1	12	263.726	-	-	9	1	1	AL136324.1|ENST00000513923|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL136324.1|ENST00000513923|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	3	2	4	2	45	49	46	49	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729433564	1	83253963	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	83253963	83253980	2	12	264.328	-	-	8	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	3	2	3	4	54	45	54	45	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729436493	1	90677746	G	GT	1320	PASS	-	-	-	-	-	Ins	-	I	90677746	90677753	1	135	1157.02	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	14	8	18	13	53	41	54	41	18	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729440389	1	99220393	G	GT	300	PASS	SNX7	CCDS755.2	r.?	-	-	Ins	intronic	I	99220393	99220403	1	12	263.124	-	-	9	1	1	SNX7|CCDS755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNX7|CCDS755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	2	3	2	6	58	69	60	69	2	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729442352	1	104347774	ATAATT	A	780	PASS	-	-	-	-	-	Del	-	D	104347774	104347785	5	54	692.671	-	-	2	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	8	5	9	7	39	29	39	29	9	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729443478	1	106948211	C	CA	1289	PASS	-	-	-	-	-	Ins	-	I	106948211	106948217	1	143	1157.02	-	-	5	1	1	-	-	./.	0	0	0	0	17	12	18	12	0	0	./.	10	12	14	12	38	24	38	24	14	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729444468	1	109457155	TA	T	300	PASS	GPSM2	CCDS792.2	r.?	-	-	Del	intronic	D	109457155	109457165	1	12	266.736	-	-	9	1	1	GPSM2|CCDS792.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPSM2|CCDS792.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	3	2	49	41	49	41	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729445977	1	113003543	G	GA	900	PASS	CTTNBP2NL	CCDS845.1	r.5654_5655insa	c.?	p.?	Ins	3'UTR variant	I	113003543	113003546	1	66	792.984	-	-	2	1	-	CTTNBP2NL|CCDS845.1|r.5654_5655insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CTTNBP2NL|CCDS845.1|r.5654_5655insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	17	11	17	0	0	./.	10	5	16	10	48	40	48	40	16	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729448713	1	119231544	CA	C	269	PASS	-	-	-	-	-	Del	-	D	119231544	119231553	1	12	267.338	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	2	3	2	3	55	44	55	44	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729449327	1	120843475	C	CTT	290	PASS	FAM72B	CCDS41374.1	r.?	-	-	Ins	intronic	I	120843475	120843478	2	27	512.4	-	-	2	1	-	FAM72B|CCDS41374.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM72B|CCDS41374.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	8	2	9	13	71	90	71	90	9	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729451927	1	143512869	G	GA	979	PASS	-	-	-	-	-	Ins	-	I	143512869	143512872	1	117	1055.51	-	-	2	1	1	-	-	./.	0	0	0	0	70	69	70	70	0	0	./.	12	8	16	12	248	305	250	311	16	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729454067	1	147248079	A	AG	360	PASS	GJA5	CCDS929.1	r.?	-	-	Ins	upstream	I	147248079	147248080	1	16	313.581	-	-	0	1	1	GJA5|CCDS929.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	GJA5|CCDS929.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	8	14	8	0	0	./.	3	3	3	4	66	60	66	60	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729454588	1	148826174	C	CT	322	PASS	-	-	-	-	-	Ins	-	I	148826174	148826181	1	84	949.172	-	-	6	1	1	-	-	./.	0	0	0	0	5	19	5	19	0	0	./.	5	13	9	14	40	79	40	81	9	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729456578	1	151000257	TGC	T	480	PASS	PRUNE	CCDS977.1	r.?	-	-	Del	intronic	D	151000257	151000267	2	24	423.527	-	-	4	1	-	PRUNE|CCDS977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRUNE|CCDS977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	3	5	3	6	78	55	78	55	3	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729458768	1	154240674	C	CT	1107	PASS	UBAP2L	CCDS1063.1	r.?	-	-	Ins	intronic	I	154240674	154240683	1	105	1047.68	-	-	8	1	1	UBAP2L|CCDS1063.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBAP2L|CCDS1063.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	6	14	9	21	83	84	84	85	9	21	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729458917	1	154376765	TC	T	660	PASS	IL6R	CCDS1067.1	r.?	-	-	Del	upstream	D	154376765	154376767	1	12	572.49	-	-	1	1	1	IL6R|CCDS1067.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	IL6R|CCDS1067.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	12	13	12	0	0	./.	11	0	25	0	99	40	99	40	25	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729459049	1	154562623	CCG	C	329	PASS	ADAR	CCDS1071.1	r.?	-	-	Del	intronic	D	154562623	154562627	2	15	312.377	-	-	1	1	1	ADAR|CCDS1071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAR|CCDS1071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	11	2	84	49	84	49	11	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729461014	1	157055470	TG	T	300	PASS	-	-	-	-	-	Del	-	D	157055470	157055472	1	6	253.491	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	0	17	0	58	62	58	65	17	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729462504	1	160392710	TA	T	269	PASS	VANGL2	CCDS30915.1	r.?	-	-	Del	intronic	D	160392710	160392712	1	6	258.909	-	-	1	1	1	VANGL2|CCDS30915.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VANGL2|CCDS30915.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	0	9	0	70	77	70	77	9	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729464154	1	163080697	G	GGT	325	PASS	-	-	-	-	-	Ins	-	I	163080697	163080698	2	16	411.485	-	-	0	1	-	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	1	7	2	1	79	74	80	75	3	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729464233	1	163213603	AAC	A	360	PASS	-	-	-	-	-	Del	-	D	163213603	163213621	2	12	317.795	-	-	8	1	-	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	5	1	5	2	92	43	92	43	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729465168	1	164938067	CAT	C	480	PASS	-	-	-	-	-	Del	-	D	164938067	164938083	2	21	427.741	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	6	2	6	3	87	72	87	72	6	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729465778	1	165982120	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	165982120	165982126	1	100	950.978	-	-	5	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	9	9	14	13	82	77	82	78	14	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729467919	1	169720070	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	169720070	169720086	2	16	320.806	-	-	7	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	3	3	5	53	69	53	69	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729468306	1	170461760	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	170461760	170461770	1	7	315.387	-	-	9	1	1	-	-	./.	0	0	0	0	25	14	25	14	0	0	./.	6	0	7	1	93	58	94	59	7	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729472380	1	177903124	T	TC	269	PASS	SEC16B	CCDS44281.1	r.?	-	-	Ins	intronic	I	177903124	177903131	1	12	257.705	-	-	6	1	1	SEC16B|CCDS44281.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEC16B|CCDS44281.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	5	10	80	81	82	81	5	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729473384	1	179321225	TA	T	360	PASS	SOAT1	CCDS1330.1	r.?	-	-	Del	intronic	D	179321225	179321229	1	7	314.785	-	-	3	1	1	SOAT1|CCDS1330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOAT1|CCDS1330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	6	0	9	0	88	43	88	43	9	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729473633	1	179626461	CATGTTCTGTTAA	C	754	PASS	TDRD5	CCDS1332.1	r.?	-	-	Del	intronic	D	179626461	179626474	12	195	1390.16	-	-	1	1	1	TDRD5|CCDS1332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TDRD5|CCDS1332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	12	14	12	17	70	78	70	78	12	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729475494	1	182798485	CTTT	C	1318	PASS	NPL	CCDS1350.1	r.1450_1452delUUU	c.?	p.?	Del	3'UTR variant	D	182798485	182798489	3	150	1229.15	-	-	3	1	1	NPL|CCDS1350.1|r.1450_1452delUUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	NPL|CCDS1350.1|r.1450_1452delUUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	10	14	10	0	0	./.	14	9	21	10	81	80	81	80	21	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729475962	1	183479542	A	AT	300	PASS	SMG7	CCDS1355.1	r.?	-	-	Ins	intronic	I	183479542	183479552	1	6	264.328	-	-	9	1	1	SMG7|CCDS1355.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMG7|CCDS1355.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	5	0	6	0	66	66	67	67	6	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729477147	1	185673852	GA	G	1200	PASS	-	-	-	-	-	Del	-	D	185673852	185673857	1	117	1068.15	-	-	4	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	8	12	12	17	77	82	77	82	12	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729478009	1	187278845	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	187278845	187278863	2	12	267.338	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	2	4	4	80	71	80	71	4	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729478428	1	188122386	ATCT	A	987	PASS	-	-	-	-	-	Del	-	D	188122386	188122394	3	96	962.417	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	11	7	14	10	60	73	60	73	14	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729481056	1	192798164	T	TA	633	PASS	-	-	-	-	-	Ins	-	I	192798164	192798173	1	72	844.043	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	11	7	15	78	74	80	74	7	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729482365	1	195100742	C	CA	1380	PASS	-	-	-	-	-	Ins	-	I	195100742	195100750	1	144	1214.1	-	-	7	1	1	-	-	./.	0	0	0	0	10	29	10	29	0	0	./.	8	15	10	16	94	105	95	105	10	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729483127	1	196715592	C	CA	388	PASS	CFH	CCDS1385.1	r.?	-	-	Ins	intronic	I	196715592	196715600	1	16	422.323	-	-	7	1	1	CFH|CCDS1385.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CFH|CCDS1385.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	33	15	33	0	0	./.	1	7	3	9	65	77	65	77	3	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729483612	1	197721092	G	GAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGTAGAAGGAGGAGAAGAAGGAAGAGA	420	PASS	DENND1B	CCDS44289.1	r.?	-	-	Ins	intronic	I	197721092	197721125	57	14	133.449	-	-	0	1	1	DENND1B|CCDS44289.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DENND1B|CCDS44289.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	6	1	0	0	105	18	105	18	6	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729487080	1	203130716	TG	T	300	PASS	ADORA1	CCDS1434.1	r.?	-	-	Del	intronic	D	203130716	203130718	1	6	235.429	-	-	1	1	1	ADORA1|CCDS1434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADORA1|CCDS1434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	15	0	69	102	69	102	15	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729487081	1	203132435	CTT	C	929	PASS	ADORA1	CCDS1434.1	r.?	-	-	Del	intronic	D	203132435	203132440	2	81	853.074	-	-	4	1	1	ADORA1|CCDS1434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADORA1|CCDS1434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	8	8	10	11	61	72	61	72	10	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729487814	1	204027008	AG	A	269	PASS	-	-	-	-	-	Del	-	D	204027008	204027010	1	10	266.736	-	-	1	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	4	1	6	3	75	76	75	76	6	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729493242	1	213462853	AATT	A	894	PASS	-	-	-	-	-	Del	-	D	213462853	213462857	3	99	962.417	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	8	10	10	10	67	62	67	62	10	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729493425	1	213871988	G	GTA	300	PASS	-	-	-	-	-	Ins	-	I	213871988	213872004	2	6	261.318	-	-	7	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	5	0	8	0	85	77	87	78	8	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729493537	1	214111029	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	214111029	214111030	1	12	310.571	-	-	0	1	-	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	1	7	1	76	81	76	81	7	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729494705	1	216190189	TTG	T	269	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216190189	216190209	2	12	266.134	-	-	9	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	2	4	45	65	45	65	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729496611	1	219653626	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	219653626	219653636	1	24	418.71	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	3	12	6	93	67	93	68	12	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729496751	1	219890206	GCT	G	600	PASS	-	-	-	-	-	Del	-	D	219890206	219890223	2	32	534.676	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	7	3	9	4	69	69	69	69	9	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729497661	1	221342367	TTA	T	300	PASS	-	-	-	-	-	Del	-	D	221342367	221342372	2	6	261.318	-	-	2	1	-	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	5	0	6	0	59	98	59	98	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729498254	1	222583607	TTA	T	478	PASS	-	-	-	-	-	Del	-	D	222583607	222583611	2	10	455.32	-	-	1	1	-	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	9	0	21	0	83	59	83	59	21	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729498969	1	223964806	CCT	C	300	PASS	TP53BP2	CCDS1538.1	r.?	-	-	Del	downstream	D	223964806	223964823	2	12	267.338	-	-	8	1	1	TP53BP2|CCDS1538.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TP53BP2|CCDS1538.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	13	6	13	0	0	./.	3	2	3	4	58	55	58	55	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729500717	1	226352490	C	CT	300	PASS	ACBD3	CCDS1551.1	r.623_624insa	c.568_569insA	p.R190fs*11	Ins	frameshift	I	226352490	226352500	1	12	263.726	-	-	9	1	1	ACBD3|CCDS1551.1|r.623_624insa|c.568_569insA|p.R190fs*11|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ACBD3|CCDS1551.1|r.623_624insa|c.568_569insA|p.R190fs*11|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	11	12	12	12	0	0	./.	2	3	2	4	77	38	79	38	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729501707	1	227721240	AGT	A	360	PASS	-	-	-	-	-	Del	-	D	227721240	227721257	2	15	320.806	-	-	8	1	1	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	4	2	5	3	87	57	87	57	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729502082	1	228612119	TAC	T	389	PASS	HIST3H3	CCDS1572.1	r.?	-	-	Del	downstream	D	228612119	228612138	2	20	373.069	-	-	9	1	1	HIST3H3|CCDS1572.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	HIST3H3|CCDS1572.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	8	11	8	11	0	0	./.	4	3	7	7	67	54	67	54	7	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729503713	1	231503032	TTGAC	T	2539	PASS	EGLN1	CCDS1595.1	r.?	-	-	Del	intronic	D	231503032	231503040	4	561	2564.64	-	-	1	1	1	EGLN1|CCDS1595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EGLN1|CCDS1595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	32	16	39	16	82	54	82	55	39	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729506305	1	235626327	GTA	G	360	PASS	B3GALNT2	CCDS1606.1	r.?	-	-	Del	intronic	D	235626327	235626342	2	16	320.806	-	-	7	1	1	B3GALNT2|CCDS1606.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	B3GALNT2|CCDS1606.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	21	21	21	0	0	./.	3	3	3	2	45	66	45	66	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729507292	1	236784691	TA	T	416	PASS	-	-	-	-	-	Del	-	D	236784691	236784700	1	28	480.607	-	-	8	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	6	3	7	3	67	57	67	57	7	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729507506	1	237075285	A	AT	2690	PASS	-	-	-	-	-	Ins	-	I	237075285	237075294	1	612	2637.86	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	18	13	0	0	./.	17	33	34	55	70	111	70	113	34	55	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729508127	1	237983929	G	GT	1496	PASS	RYR2	ENST00000366574	r.?	-	-	Ins	intronic	I	237983929	237983937	1	180	1426.17	-	-	7	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	17	16	0	0	./.	19	8	24	14	94	70	95	70	24	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729508179	1	238085325	CAG	C	329	PASS	-	-	-	-	-	Del	-	D	238085325	238085345	2	16	317.193	-	-	9	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	5	4	68	83	68	83	5	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729509192	1	239911010	TA	T	2520	PASS	CHRM3	CCDS1616.1	r.?	-	-	Del	intronic	D	239911010	239911015	1	483	2245.04	-	-	4	1	1	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	22	20	29	30	78	60	78	60	29	30	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729509513	1	240340677	TTC	T	329	PASS	FMN2	CCDS31069.2	r.?	-	-	Del	intronic	D	240340677	240340681	2	7	316.591	-	-	1	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	6	0	10	0	55	61	55	61	10	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729510112	1	241129467	T	TA	1140	PASS	RGS7	CCDS31071.1	r.?	-	-	Ins	intronic	I	241129467	241129477	1	108	999.027	-	-	9	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	11	8	12	12	80	79	80	81	12	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729510576	1	241792815	CAT	C	960	PASS	CHML	CCDS31073.1	r.6416_6417delAU	c.?	p.?	Del	3'UTR variant	D	241792815	241792821	2	65	854.88	-	-	2	1	1	CHML|CCDS31073.1|r.6416_6417delAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CHML|CCDS31073.1|r.6416_6417delAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	19	17	19	0	0	./.	4	12	5	16	68	84	68	84	5	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729512120	1	244045685	GAA	G	420	PASS	-	-	-	-	-	Del	-	D	244045685	244045689	2	20	365.242	-	-	3	1	-	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	4	3	4	47	81	47	81	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729514577	1	247405367	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	247405367	247405377	1	12	264.328	-	-	9	1	1	-	-	./.	0	0	0	0	9	24	9	24	0	0	./.	2	3	4	3	71	68	71	68	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729514595	1	247426294	TC	T	4102	PASS	-	-	-	-	-	Del	-	D	247426294	247426300	1	1215	3734.91	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	26	44	36	53	59	91	59	91	36	53	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729516639	10	2494336	TATTA	T	745	PASS	-	-	-	-	-	Del	-	D	2494336	2494344	4	72	805.295	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	7	8	11	15	50	47	50	47	11	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729517678	10	4621475	CA	C	832	PASS	-	-	-	-	-	Del	-	D	4621475	4621483	1	60	752.171	-	-	7	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	9	5	15	8	46	36	46	36	15	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729518827	10	6770939	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	6770939	6770949	1	10	265.622	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	1	4	2	3	43	46	43	47	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729518986	10	7028688	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	7028688	7028692	2	6	268.632	-	-	1	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	5	0	6	0	38	32	38	32	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729519266	10	7601824	G	GT	840	PASS	ITIH5	CCDS31139.1	r.6129_6130insa	c.?	p.?	Ins	3'UTR variant	I	7601824	7601834	1	60	742.538	-	-	9	1	-	ITIH5|CCDS31139.1|r.6129_6130insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ITIH5|ENST00000397146|r.2098_2099insa|c.2019_2020insA|p.Q674fs*>23|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	17	19	17	19	0	0	./.	5	9	14	12	45	57	45	58	14	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729519572	10	8111432	TCA	T	840	PASS	GATA3	CCDS31143.1	r.1493-3_1493-2delca	c.925-3_925-2delca	p.?	Del	ess splice	D	8111432	8111435	2	60	749.762	-	-	1	1	1	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	16	12	16	12	0	0	./.	5	9	14	12	27	26	27	26	14	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729523512	10	15341685	TA	T	300	PASS	FAM171A1	CCDS31154.1	r.?	-	-	Del	intronic	D	15341685	15341695	1	6	268.03	-	-	9	1	1	FAM171A1|CCDS31154.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM171A1|CCDS31154.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	5	0	5	0	51	55	51	55	5	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729525390	10	19352080	C	CA	415	PASS	ENSG00000234778	ENST00000455529	r.?	-	-	Ins	intronic	I	19352080	19352090	1	18	368.861	-	-	9	1	1	ENSG00000234778|ENST00000455529|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000234778|ENST00000455529|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	20	5	20	0	0	./.	5	2	1	0	40	39	41	39	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729526652	10	21937144	T	TA	1560	PASS	MLLT10	CCDS7135.1	r.?	-	-	Ins	intronic	I	21937144	21937145	1	187	1381.23	-	-	0	1	1	MLLT10|CCDS7135.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MLLT10|CCDS7135.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	16	10	17	13	45	25	45	25	17	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729530901	10	30299847	AAT	A	329	PASS	KIAA1462	CCDS41500.1	r.?	-	-	Del	downstream	D	30299847	30299863	2	16	318.746	-	-	7	1	1	KIAA1462|CCDS41500.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL160060.2|ENST00000502624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	3	4	46	55	46	55	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729531130	10	30679262	G	GT	1517	PASS	-	-	-	-	-	Ins	-	I	30679262	30679272	1	196	1377.62	-	-	9	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	13	13	16	16	45	54	46	54	16	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729531313	10	30914458	C	CA	329	PASS	LYZL2	CCDS7167.2	r.?	-	-	Ins	intronic	I	30914458	30914468	1	15	316.338	-	-	9	1	1	LYZL2|CCDS7167.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LYZL2|CCDS7167.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	12	25	12	0	0	./.	4	2	4	2	64	44	64	44	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729532466	10	33285356	G	GA	840	PASS	ITGB1	ENST00000475184	r.?	-	-	Ins	intronic	I	33285356	33285364	1	64	743.742	-	-	7	1	1	ITGB1|ENST00000475184|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ITGB1|ENST00000475184|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	7	13	10	37	44	37	45	13	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729539806	10	51030270	CTG	C	360	PASS	PARG	ENST00000402038	r.?	-	-	Del	intronic	D	51030270	51030290	2	16	322.359	-	-	9	1	-	PARG|ENST00000402038|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARG|ENST00000402038|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	3	3	3	5	36	59	36	59	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729546266	10	65663781	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	65663781	65663791	1	12	318.746	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	1	5	0	1	53	46	53	46	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729546853	10	67113069	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	67113069	67113070	1	6	257.193	-	-	0	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	0	7	1	57	44	57	44	7	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729549952	10	72870343	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	72870343	72870353	1	12	262.01	-	-	9	1	1	-	-	./.	0	0	0	0	24	15	25	15	0	0	./.	2	3	2	4	46	49	49	49	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729557913	10	91632170	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	91632170	91632188	2	10	268.632	-	-	8	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	4	1	5	2	69	45	69	45	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729561258	10	98999879	AG	A	300	PASS	ARHGAP19	CCDS7454.2	r.?	-	-	Del	intronic	D	98999879	98999885	1	12	268.632	-	-	5	1	1	ARHGAP19|CCDS7454.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP19|CCDS7454.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	2	3	58	32	58	32	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729561673	10	99873037	GACA	G	1018	PASS	-	-	-	-	-	Del	-	D	99873037	99873045	3	75	964.066	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	14	4	18	7	44	36	44	36	18	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729565305	10	106957285	G	GA	1500	PASS	SORCS3	CCDS7558.1	r.?	-	-	Ins	intronic	I	106957285	106957293	1	182	1322.69	-	-	7	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	12	13	15	13	40	36	40	36	15	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729570240	10	119038975	ATGT	A	656	PASS	PDZD8	CCDS7600.1	r.?	-	-	Del	downstream	D	119038975	119038984	3	54	695.434	-	-	2	1	1	PDZD8|CCDS7600.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PDZD8|CCDS7600.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	11	12	11	0	0	./.	8	5	9	16	46	52	46	52	9	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729571023	10	120839095	AG	A	360	PASS	EIF3A	CCDS7608.1	r.?	-	-	Del	intronic	D	120839095	120839100	1	15	322.359	-	-	4	1	1	EIF3A|CCDS7608.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF3A|CCDS7608.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	2	4	2	46	53	46	53	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729571768	10	122123154	AAAT	A	1016	PASS	-	-	-	-	-	Del	-	D	122123154	122123160	3	108	1020.2	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	11	8	18	12	58	34	58	34	18	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729572868	10	124244882	CTTCT	C	1287	PASS	HTRA1	CCDS7630.1	r.?	-	-	Del	intronic	D	124244882	124244891	4	136	1235.71	-	-	2	1	1	HTRA1|CCDS7630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTRA1|CCDS7630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	7	16	8	18	31	40	31	40	8	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729574724	10	128267631	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	128267631	128267641	1	12	265.02	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	3	3	6	39	67	39	67	3	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729575859	10	131107393	CAT	C	1620	PASS	-	-	-	-	-	Del	-	D	131107393	131107396	2	204	1449.41	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	16	11	21	15	56	33	56	33	21	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729576820	10	133672509	CT	C	1140	PASS	-	-	-	-	-	Del	-	D	133672509	133672513	1	80	1014.18	-	-	3	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	15	8	17	33	52	33	52	8	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729578353	11	1766709	TAC	T	300	PASS	ENSG00000244242	ENST00000382123	r.?	-	-	Del	intronic	D	1766709	1766726	2	12	266.706	-	-	8	1	-	ENSG00000244242|ENST00000382123|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000244242|ENST00000382123|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	2	3	56	43	56	43	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729579085	11	3710115	TTGTGTG	T	305	PASS	NUP98	CCDS7746.1	r.?	-	-	Del	intronic	D	3710115	3710122	6	30	589.041	-	-	3	1	1	NUP98|CCDS7746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP98|CCDS7746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	2	8	2	0	0	./.	9	2	15	4	20	4	20	4	15	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729580193	11	5919981	GGT	G	4200	PASS	TRIM5	ENST00000412903	r.?	-	-	Del	intronic	D	5919981	5919989	2	1295	3761.58	-	-	3	1	1	TRIM5|ENST00000412903|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRIM5|ENST00000412903|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	36	34	41	43	51	58	51	58	41	43	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729581592	11	9241113	C	CA	300	PASS	DENND5A	CCDS31423.1	r.?	-	-	Ins	intronic	I	9241113	9241123	1	10	264.298	-	-	9	1	1	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	4	2	50	43	50	44	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729583113	11	12326198	C	CAT	300	PASS	MICALCL	CCDS41620.1	r.?	-	-	Ins	intronic	I	12326198	12326200	2	12	257.073	-	-	0	1	-	MICALCL|CCDS41620.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MICALCL|CCDS41620.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	2	3	8	4	29	16	29	17	8	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729584240	11	15047279	CT	C	1200	PASS	CALCB	CCDS7820.1	r.?	-	-	Del	intronic	D	15047279	15047284	1	121	1075.86	-	-	4	1	1	CALCB|CCDS7820.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CALCB|CCDS7820.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	10	10	14	15	43	41	43	41	14	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729590244	11	29213536	AT	A	2849	PASS	-	-	-	-	-	Del	-	D	29213536	29213541	1	625	2582.29	-	-	4	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	24	24	33	30	42	36	42	36	33	30	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729592338	11	34063871	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	34063871	34063880	1	48	636.242	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	7	13	16	52	65	52	65	13	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729593277	11	36328619	CG	C	1380	PASS	-	-	-	-	-	Del	-	D	36328619	36328622	1	154	1237.93	-	-	2	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	10	13	13	19	39	43	39	43	13	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729594149	11	38755625	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	38755625	38755635	1	12	317.519	-	-	9	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	5	1	5	1	48	49	48	50	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729595313	11	41387605	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	41387605	41387615	1	12	252.257	-	-	9	1	1	-	-	./.	0	0	0	0	15	21	16	21	0	0	./.	3	2	4	2	51	38	51	39	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729596492	11	44160004	G	GT	300	PASS	EXT2	CCDS7908.1	r.?	-	-	Ins	intronic	I	44160004	44160014	1	12	262.492	-	-	9	1	1	EXT2|CCDS7908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EXT2|CCDS7908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	5	2	54	46	54	46	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729596568	11	44336259	T	TG	507	PASS	ALX4	CCDS31468.1	r.?	-	-	Ins	upstream	I	44336259	44336267	1	27	530.402	-	-	7	1	1	ALX4|CCDS31468.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ALX4|CCDS31468.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	7	9	7	0	0	./.	2	8	3	13	17	29	17	29	3	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729596956	11	45659056	CATT	C	1256	PASS	-	-	-	-	-	Del	-	D	45659056	45659060	3	144	1236.12	-	-	1	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	15	8	20	9	48	44	49	44	21	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729600471	11	56763102	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	56763102	56763118	2	10	267.91	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	1	4	2	5	30	33	30	33	2	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729600712	11	57390624	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	57390624	57390640	2	7	319.325	-	-	7	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	0	6	0	7	12	51	12	51	0	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729601703	11	59901414	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	59901414	59901422	1	15	317.519	-	-	7	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	4	2	5	2	47	44	47	44	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729604425	11	65475040	GGA	G	360	PASS	KAT5	CCDS8110.1	r.?	-	-	Del	upstream	D	65475040	65475057	2	15	321.733	-	-	8	1	1	KAT5|CCDS8110.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KAT5|CCDS8110.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	3	4	37	43	37	43	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729605868	11	68072720	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	68072720	68072736	2	10	269.114	-	-	7	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	1	3	26	54	26	54	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729606417	11	69335161	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	69335161	69335180	2	6	269.114	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	0	5	1	38	41	38	41	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729610020	11	77597493	GGTGTTGATGCCAT	G	466	PASS	INTS4	CCDS31644.1	r.?	-	-	Del	intronic	D	77597493	77597510	13	90	911.979	-	-	1	1	1	INTS4|CCDS31644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INTS4|CCDS31644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	8	9	5	9	34	35	37	35	8	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729612942	11	85086009	AAC	A	389	PASS	DLG2	CCDS44690.1	r.?	-	-	Del	intronic	D	85086009	85086028	2	18	376.158	-	-	9	1	1	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	2	5	3	5	47	59	47	59	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729615092	11	90723386	ATTT	A	1198	PASS	-	-	-	-	-	Del	-	D	90723386	90723390	3	130	1129.68	-	-	3	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	9	12	12	14	35	41	35	41	12	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729615838	11	92806587	TGC	T	298	PASS	-	-	-	-	-	Del	-	D	92806587	92806596	2	12	315.713	-	-	4	1	-	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	5	1	5	35	57	35	57	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729617102	11	95898371	AT	A	269	PASS	MAML2	CCDS44714.1	r.?	-	-	Del	intronic	D	95898371	95898381	1	12	250.451	-	-	9	1	1	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	5	4	39	56	39	56	5	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729617189	11	96092984	C	CA	480	PASS	CCDC82	CCDS8307.1	r.?	-	-	Ins	intronic	I	96092984	96092993	1	16	423.96	-	-	8	1	1	CCDC82|CCDS8307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC82|CCDS8307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	21	6	21	0	0	./.	1	7	2	13	8	54	9	55	2	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729622346	11	108301592	C	CA	898	PASS	C11orf65	CCDS8340.1	r.?	-	-	Ins	intronic	I	108301592	108301602	1	81	836.482	-	-	9	1	1	C11orf65|CCDS8340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C11orf65|CCDS8340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	8	8	12	15	25	36	25	36	12	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729623302	11	110650172	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	110650172	110650190	2	12	267.91	-	-	8	1	-	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	2	3	30	54	30	54	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729623585	11	111444624	T	TA	1440	PASS	-	-	-	-	-	Ins	-	I	111444624	111444634	1	168	1273.09	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	13	11	12	13	42	40	42	40	13	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729623695	11	111654641	GT	G	300	PASS	ALG9	CCDS41714.1	r.4712delA	c.?	p.?	Del	3'UTR variant	D	111654641	111654649	1	10	266.104	-	-	7	1	1	ALG9|CCDS41714.1|r.4712delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ALG9|CCDS41714.1|r.4712delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	14	13	14	0	0	./.	4	1	7	2	45	39	45	39	7	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729623698	11	111659473	TC	T	360	PASS	ALG9	CCDS41714.1	r.?	-	-	Del	intronic	D	111659473	111659477	1	15	322.937	-	-	3	1	1	ALG9|CCDS41714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALG9|CCDS41714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	2	6	3	49	42	49	42	6	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729624962	11	114708102	TTA	T	1200	PASS	-	-	-	-	-	Del	-	D	114708102	114708106	2	112	1072.85	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	7	13	19	23	25	33	25	33	19	23	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729626508	11	118300113	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	118300113	118300131	2	12	267.91	-	-	8	1	1	-	-	./.	0	0	0	0	13	6	13	7	0	0	./.	3	2	5	3	47	36	47	47	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729628358	11	122463232	AG	A	300	PASS	-	-	-	-	-	Del	-	D	122463232	122463234	1	6	266.104	-	-	1	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	5	0	6	0	43	31	43	31	6	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729630777	11	127908997	TA	T	420	PASS	-	-	-	-	-	Del	-	D	127908997	127908999	1	20	373.148	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	4	3	5	59	40	59	40	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729634824	12	3072408	CG	C	960	PASS	TEAD4	CCDS31729.1	r.?	-	-	Del	intronic	D	3072408	3072411	1	72	859.852	-	-	2	1	1	TEAD4|CCDS31729.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TEAD4|CCDS31729.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	11	5	13	7	38	29	38	29	13	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729635234	12	4028183	ATC	A	420	PASS	-	-	-	-	-	Del	-	D	4028183	4028201	2	20	376.712	-	-	8	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	3	4	4	58	32	58	32	4	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729635537	12	4749359	C	CA	1018	PASS	AKAP3	CCDS8531.1	r.?	-	-	Ins	intronic	I	4749359	4749368	1	75	956.647	-	-	8	1	1	AKAP3|CCDS8531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	AKAP3|CCDS8531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	14	4	21	11	58	31	59	31	21	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729635961	12	5884446	CAG	C	269	PASS	ANO2	CCDS44807.1	r.?	-	-	Del	intronic	D	5884446	5884466	2	10	269.08	-	-	9	1	1	ANO2|CCDS44807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO2|CCDS44807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	1	4	3	57	41	57	41	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729637169	12	7990363	A	AT	1318	PASS	SLC2A14	CCDS8585.1	r.?	-	-	Ins	intronic	I	7990363	7990371	1	150	1214.29	-	-	7	1	1	SLC2A14|CCDS8585.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC2A14|CCDS8585.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	9	14	13	20	51	56	51	56	13	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729638482	12	10183799	GATGAGGGAAGATGC	G	464	PASS	CLEC9A	CCDS8611.1	r.?	-	-	Del	intronic	D	10183799	10183815	14	80	860.454	-	-	1	1	1	CLEC9A|CCDS8611.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CLEC9A|CCDS8611.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	9	7	9	10	34	33	34	33	9	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729639294	12	11630305	G	GCAAGTC	406	PASS	-	-	-	-	-	Ins	-	I	11630305	11630311	6	60	702.851	-	-	0	1	1	-	-	./.	0	0	0	0	6	12	6	13	0	0	./.	9	5	0	0	44	29	45	29	9	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729640920	12	14760424	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	14760424	14760434	1	15	318.079	-	-	9	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	4	2	4	2	40	55	40	56	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729642906	12	19624054	G	GT	300	PASS	AEBP2	CCDS44842.1	r.?	-	-	Ins	intronic	I	19624054	19624064	1	12	265.468	-	-	9	1	1	AEBP2|CCDS44842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AEBP2|CCDS44842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	3	2	3	2	31	50	31	50	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729644534	12	22946897	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	22946897	22946912	2	16	322.896	-	-	7	1	-	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	3	5	3	53	42	53	42	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729647512	12	29233669	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	29233669	29233679	1	16	319.284	-	-	9	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	3	3	3	4	40	48	40	49	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729650167	12	34376932	TCTTCA	TG	524	PASS	-	-	-	-	-	Complex	-	DI	34376933	34376937	5	35	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	6	4	0	0	30	33	30	33	6	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729653099	12	44269661	G	GT	300	PASS	TMEM117	CCDS8745.1	r.?	-	-	Ins	intronic	I	44269661	44269671	1	10	265.468	-	-	9	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	1	4	1	58	37	58	37	4	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729655436	12	50050151	AAC	A	300	PASS	FMNL3	CCDS44874.1	r.?	-	-	Del	intronic	D	50050151	50050168	2	10	269.08	-	-	8	1	1	FMNL3|CCDS44874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMNL3|CCDS44874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	1	4	2	5	37	48	37	48	2	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729660857	12	61061470	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	61061470	61061480	1	6	266.07	-	-	9	1	1	-	-	./.	0	0	0	0	13	24	13	24	0	0	./.	0	5	0	5	35	52	35	52	0	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729664055	12	68755259	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	68755259	68755273	2	12	267.876	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	4	52	51	52	51	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729666630	12	74529251	GTC	G	420	PASS	-	-	-	-	-	Del	-	D	74529251	74529271	2	20	376.712	-	-	9	1	-	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	3	6	5	68	57	68	57	6	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729667257	12	76114823	AC	A	1920	PASS	-	-	-	-	-	Del	-	D	76114823	76114825	1	273	1720.91	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	20	12	23	19	60	41	60	41	23	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729668858	12	80238972	A	AT	689	PASS	PPP1R12A	CCDS44947.1	r.?	-	-	Ins	intronic	I	80238972	80238980	1	48	638.567	-	-	7	1	1	PPP1R12A|CCDS44947.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP1R12A|CCDS44947.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	7	5	9	9	39	44	39	45	9	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729677769	12	101477159	AC	A	780	PASS	ANO4	CCDS31884.1	r.?	-	-	Del	intronic	D	101477159	101477162	1	44	699.608	-	-	2	1	1	ANO4|CCDS31884.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO4|CCDS31884.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	10	3	17	6	44	40	44	40	17	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729678449	12	102914205	G	GGT	360	PASS	-	-	-	-	-	Ins	-	I	102914205	102914206	2	7	313.865	-	-	0	1	1	-	-	./.	0	0	0	0	26	14	26	15	0	0	./.	0	6	0	1	31	32	31	33	0	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729679578	12	105492075	CCTTT	C	300	PASS	-	-	-	-	-	Del	-	D	105492075	105492089	4	12	269.08	-	-	3	1	-	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	10	5	45	35	45	35	10	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729679871	12	106151347	CCTATTTGGATGTGTGAGATCTGGTGTTTTAAAACATCAGTTTCATTATT	CACAA	493	PASS	-	-	-	-	-	Complex	-	DI	106151348	106151396	49	90	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	8	9	0	0	23	30	30	34	8	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729680400	12	107565344	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	107565344	107565364	2	12	269.08	-	-	9	1	-	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	2	6	30	32	30	32	2	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729681340	12	109648222	GTATATATGTATATACACGCACATACATGTGTA	G	569	PASS	ACACB	CCDS31898.1	r.?	-	-	Del	intronic	D	109648222	109648260	32	20	538.16	-	-	1	1	-	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	9	1	0	0	44	46	44	46	9	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729682423	12	111687891	C	CA	300	PASS	CUX2	CCDS41837.1	r.?	-	-	Ins	intronic	I	111687891	111687901	1	10	266.07	-	-	9	1	1	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	12	16	0	0	./.	4	1	5	2	43	54	44	54	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729684340	12	115258513	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	115258513	115258523	1	24	419.691	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	10	13	0	0	./.	3	5	4	8	53	48	54	49	4	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729688098	12	122156250	C	CA	269	PASS	TMEM120B	CCDS41852.1	r.?	-	-	Ins	intronic	I	122156250	122156260	1	12	255.233	-	-	9	1	-	TMEM120B|CCDS41852.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM120B|CCDS41852.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	11	15	0	0	./.	2	3	2	4	50	63	50	63	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729688154	12	122239511	CAAGCT	CCA	1138	PASS	SETD1B	ENST00000267197	r.?	-	-	Complex	upstream	DI	122239512	122239516	5	112	0	-	-	0	1	1	SETD1B|ENST00000267197|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	SETD1B|ENST00000267197|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	11	14	11	14	0	0	./.	13	7	0	0	68	40	68	40	13	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729690301	12	125555280	ACCAAGTAGGTGGTAGTAGTAGCC	A	377	PASS	AACS	CCDS9263.1	r.?	-	-	Del	intronic	D	125555280	125555307	23	56	699.608	-	-	1	1	1	AACS|CCDS9263.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AACS|CCDS9263.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	6	7	6	5	35	30	35	32	6	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729694043	12	133564990	T	TA	360	PASS	ZNF26	CCDS31939.1	r.?	-	-	Ins	intronic	I	133564990	133564996	1	16	316.875	-	-	5	1	1	ZNF26|CCDS31939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF26|CCDS31939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	3	3	6	6	45	58	45	58	6	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729697571	13	25958042	AT	A	300	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Del	intronic	D	25958042	25958048	1	12	270.536	-	-	5	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	4	2	21	24	21	24	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729698755	13	28951333	CTT	C	1169	PASS	FLT1	CCDS9330.1	r.?	-	-	Del	intronic	D	28951333	28951337	2	120	1079.13	-	-	3	1	1	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	9	11	11	14	25	31	25	31	11	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729704349	13	45009743	C	CG	540	PASS	TSC22D1	CCDS31966.1	r.?	-	-	Ins	intronic	I	45009743	45009745	1	24	481.546	-	-	1	1	1	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	7	4	9	17	34	17	34	4	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729707187	13	54991495	CAG	C	1138	PASS	-	-	-	-	-	Del	-	D	54991495	54991498	2	117	1081.54	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	8	12	18	15	29	19	29	19	18	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729710837	13	66020118	CA	C	900	PASS	-	-	-	-	-	Del	-	D	66020118	66020125	1	70	811.607	-	-	6	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	9	6	13	11	23	25	23	25	13	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729711993	13	69549529	TG	T	780	PASS	-	-	-	-	-	Del	-	D	69549529	69549532	1	56	700.984	-	-	2	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	7	9	15	19	23	19	23	9	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729719600	13	92954727	T	TA	1020	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	92954727	92954736	1	84	908.382	-	-	8	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	11	6	14	8	27	19	27	19	14	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729719975	13	94099216	T	TG	660	PASS	GPC6	CCDS9469.1	r.?	-	-	Ins	intronic	I	94099216	94099224	1	40	583.137	-	-	7	1	1	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	7	4	1	1	35	30	35	31	8	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729722249	13	100393799	C	CT	1080	PASS	CLYBL	ENST00000376360	r.?	-	-	Ins	intronic	I	100393799	100393808	1	99	947.438	-	-	8	1	1	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	8	10	13	12	31	30	31	30	13	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729725308	13	108993813	ATCT	A	1227	PASS	-	-	-	-	-	Del	-	D	108993813	108993819	3	140	1185.54	-	-	1	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	9	13	14	19	21	31	21	31	14	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729728313	14	21451241	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	21451241	21451242	1	12	266.377	-	-	0	1	1	-	-	./.	0	0	0	0	12	11	13	12	0	0	./.	2	3	2	4	37	56	38	56	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729731815	14	28982890	C	CT	1800	PASS	-	-	-	-	-	Ins	-	I	28982890	28982897	1	255	1600.07	-	-	6	1	1	-	-	./.	0	0	0	0	20	14	21	14	0	0	./.	14	16	20	24	56	64	56	65	20	24	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729734957	14	35540378	A	AT	300	PASS	FAM177A1	CCDS41944.1	r.?	-	-	Ins	intronic	I	35540378	35540388	1	10	254.938	-	-	9	1	1	FAM177A1|CCDS41944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM177A1|CCDS41944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	5	2	66	55	67	56	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729735660	14	36893173	GT	G	900	PASS	-	-	-	-	-	Del	-	D	36893173	36893176	1	70	809.969	-	-	2	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	9	6	15	8	29	27	29	27	15	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729741343	14	50402256	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	50402256	50402266	1	12	265.173	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	4	2	56	48	57	48	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729744425	14	56764114	A	AATATCTTT	812	PASS	PELI2	CCDS9726.1	r.1779_1780insauaucuuu	c.?	p.?	Ins	3'UTR variant	I	56764114	56764123	8	221	1376.48	-	-	1	1	1	PELI2|CCDS9726.1|r.1779_1780insauaucuuu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	PELI2|CCDS9726.1|r.1779_1780insauaucuuu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	17	23	17	23	0	0	./.	12	16	11	18	48	51	49	51	12	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729745698	14	59481644	GT	G	780	PASS	-	-	-	-	-	Del	-	D	59481644	59481648	1	50	689.932	-	-	3	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	9	4	10	8	48	30	48	30	10	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729753541	14	76330428	G	GT	300	PASS	TTLL5	CCDS32124.1	r.?	-	-	Ins	intronic	I	76330428	76330438	1	12	263.367	-	-	9	1	1	TTLL5|CCDS32124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTLL5|CCDS32124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	16	4	16	0	0	./.	3	2	3	2	34	33	34	33	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729754418	14	77903941	C	CT	300	PASS	VIPAR	CCDS9862.1	r.?	-	-	Ins	intronic	I	77903941	77903951	1	12	266.979	-	-	9	1	1	VIPAR|CCDS9862.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VIPAR|CCDS9862.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	4	2	53	39	53	39	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729755267	14	79591223	G	GT	360	PASS	NRXN3	CCDS9870.1	r.?	-	-	Ins	intronic	I	79591223	79591233	1	7	318.569	-	-	9	1	1	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	11	32	12	0	0	./.	0	6	0	6	42	51	43	52	0	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729763098	14	97837846	G	GA	1140	PASS	-	-	-	-	-	Ins	-	I	97837846	97837856	1	90	1011.51	-	-	9	1	1	-	-	./.	0	0	0	0	9	24	9	24	0	0	./.	14	5	18	7	50	33	50	33	18	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729766822	14	106018451	TG	T	300	PASS	-	-	-	-	-	Del	-	D	106018451	106018453	1	6	262.765	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	0	15	0	45	64	45	64	15	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729771482	15	26559152	AT	A	867	PASS	-	-	-	-	-	Del	-	D	26559152	26559156	1	80	863.057	-	-	3	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	9	7	11	12	36	40	36	41	11	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729780631	15	45996416	TG	T	300	PASS	-	-	-	-	-	Del	-	D	45996416	45996418	1	10	268.275	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	9	1	50	29	50	29	9	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729786725	15	59162928	GAAATAAATAATTTACAAAAATGTTAAA	G	377	PASS	-	-	-	-	-	Del	-	D	59162928	59162957	27	54	701.61	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	8	5	5	33	29	33	32	5	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729789949	15	65309442	A	AT	300	PASS	MTFMT	CCDS45280.1	r.?	-	-	Ins	intronic	I	65309442	65309443	1	10	266.469	-	-	0	1	1	MTFMT|CCDS45280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTFMT|CCDS45280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	4	1	5	1	56	27	57	27	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729792480	15	70616221	AAAT	A	1198	PASS	-	-	-	-	-	Del	-	D	70616221	70616230	3	132	1133.74	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	11	10	14	11	40	30	40	30	14	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729792663	15	71048525	T	TGA	420	PASS	UACA	CCDS10235.1	r.?	-	-	Ins	intronic	I	71048525	71048528	2	18	366.675	-	-	1	1	1	UACA|CCDS10235.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UACA|CCDS10235.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	9	0	0	./.	2	5	3	8	25	42	26	42	3	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729796087	15	78359733	CAA	C	840	PASS	TBC1D2B	CCDS32301.2	r.?	-	-	Del	intronic	D	78359733	78359737	2	63	755.024	-	-	3	1	1	TBC1D2B|CCDS32301.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D2B|CCDS32301.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	8	6	10	8	32	22	32	22	10	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729796820	15	79681197	A	AT	1320	PASS	TMED3	ENST00000424155	r.?	-	-	Ins	intronic	I	79681197	79681204	1	80	1174.51	-	-	6	1	1	TMED3|ENST00000424155|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMED3|ENST00000424155|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	19	3	22	7	51	38	51	38	22	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729797293	15	80694189	CGA	C	360	PASS	ARNT2	CCDS32307.1	r.?	-	-	Del	upstream	D	80694189	80694198	2	16	324.098	-	-	4	1	1	ARNT2|CCDS32307.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ARNT2|CCDS32307.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	5	5	48	34	48	34	5	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729798959	15	84812890	T	TA	869	PASS	-	-	-	-	-	Ins	-	I	84812890	84812892	1	66	800.611	-	-	1	1	1	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	5	10	10	13	38	33	38	33	10	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729799900	15	86707647	ATTAC	A	1134	PASS	AGBL1	ENST00000421325	r.?	-	-	Del	intronic	D	86707647	86707654	4	140	1188.36	-	-	1	1	1	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	13	9	16	11	39	34	39	34	16	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729802257	15	92142750	ATAT	A	716	PASS	-	-	-	-	-	Del	-	D	92142750	92142757	3	64	755.024	-	-	2	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	7	7	10	8	37	31	37	31	10	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729802530	15	92866518	C	CACAG	1641	PASS	AC116903.2	ENST00000502597	r.?	-	-	Ins	intronic	I	92866518	92866519	4	288	1649.65	-	-	0	1	1	AC116903.2|ENST00000502597|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC116903.2|ENST00000502597|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	17	15	19	17	48	55	48	55	19	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729803295	15	94241923	AAAT	A	1374	PASS	-	-	-	-	-	Del	-	D	94241923	94241932	3	192	1404.42	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	11	15	13	24	36	54	36	54	13	24	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729804207	15	96464709	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	96464709	96464727	2	15	324.098	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	4	2	35	36	35	36	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729806187	15	100842024	CA	C	1359	PASS	ADAMTS17	CCDS10383.1	r.?	-	-	Del	intronic	D	100842024	100842026	1	180	1350.41	-	-	1	1	1	ADAMTS17|CCDS10383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS17|CCDS10383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	11	14	14	16	43	42	43	42	14	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729807499	16	878051	C	CGGGCAGCCAGGCAGGGGTCTGGCCCAGTCCTAGCCGGGGGAAATGAACTCTCGGCCTCCA	261	PASS	-	-	-	-	-	Ins	-	I	878051	878087	60	30	157.04	-	-	0	1	1	-	-	./.	0	0	0	0	8	13	10	13	0	0	./.	5	4	0	0	101	54	110	61	5	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729813061	16	9576131	GGT	G	360	PASS	-	-	-	-	-	Del	-	D	9576131	9576147	2	16	318.425	-	-	7	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	4	4	49	49	49	49	4	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729813356	16	10191949	G	GA	420	PASS	GRIN2A	CCDS10539.1	r.?	-	-	Ins	intronic	I	10191949	10191959	1	20	354.337	-	-	9	1	1	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	3	4	3	5	58	73	58	73	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729815326	16	12844859	C	CA	360	PASS	CPPED1	CCDS42120.1	r.?	-	-	Ins	intronic	I	12844859	12844868	1	15	314.812	-	-	8	1	1	CPPED1|CCDS42120.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CPPED1|CCDS42120.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	4	2	1	0	57	48	57	48	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729816655	16	15171184	T	TG	904	PASS	RRN3	CCDS10559.1	r.?	-	-	Ins	intronic	I	15171184	15171193	1	100	955.876	-	-	8	1	1	RRN3|CCDS10559.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RRN3|CCDS10559.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	9	9	13	12	83	69	84	69	13	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729816724	16	15329991	G	GGT	296	PASS	-	-	-	-	-	Ins	-	I	15329991	15329992	2	24	468.305	-	-	0	1	-	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	7	0	3	80	79	80	79	2	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729818102	16	17721173	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	17721173	17721190	2	12	265.053	-	-	8	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	2	49	42	49	42	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729819261	16	19587183	A	AAATT	394	PASS	C16orf62	CCDS32397.1	r.?	-	-	Ins	intronic	I	19587183	19587185	4	63	721.919	-	-	0	1	1	C16orf62|CCDS32397.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C16orf62|CCDS32397.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	8	6	0	0	52	56	52	59	8	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729820523	16	21884762	C	CAAAA	435	PASS	-	-	-	-	-	Ins	-	I	21884762	21884765	4	16	772.28	-	-	2	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	15	0	17	0	89	36	89	36	17	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729821633	16	23760767	CTG	C	329	PASS	-	-	-	-	-	Del	-	D	23760767	23760785	2	15	323.241	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	4	4	52	51	52	51	4	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729823892	16	27272504	AG	A	420	PASS	NSMCE1	CCDS10628.2	r.?	-	-	Del	intronic	D	27272504	27272506	1	8	376.613	-	-	1	1	1	NSMCE1|CCDS10628.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NSMCE1|CCDS10628.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	4	15	4	0	0	./.	7	0	12	0	92	48	92	48	12	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729824258	16	27972349	GAC	G	300	PASS	GSG1L	CCDS45450.1	r.?	-	-	Del	intronic	D	27972349	27972366	2	12	263.849	-	-	8	1	-	GSG1L|CCDS45450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GSG1L|CCDS45450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	16	5	16	0	0	./.	3	2	3	3	73	41	73	41	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729827642	16	32817816	AT	A	343	PASS	-	-	-	-	-	Del	-	D	32817816	32817820	1	12	593.713	-	-	3	1	-	-	-	./.	0	0	0	0	16	56	18	56	0	0	./.	0	11	0	14	94	239	101	239	0	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729829651	16	34479019	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	34479019	34479035	2	12	269.869	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	3	3	71	43	71	43	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729830139	16	46399037	AT	A	567	PASS	-	-	-	-	-	Del	-	D	46399037	46399040	1	48	2523.53	-	-	2	1	1	-	-	./.	0	0	0	0	53	49	53	51	0	0	./.	0	47	0	1	105	144	110	209	0	48	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729832500	16	52664340	CT	C	720	PASS	-	-	-	-	-	Del	-	D	52664340	52664347	1	49	647.084	-	-	6	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	6	6	11	11	22	21	22	21	11	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729834227	16	57976225	A	AT	1289	PASS	CNGB1	CCDS42169.1	r.?	-	-	Ins	intronic	I	57976225	57976226	1	128	1172.37	-	-	0	1	1	CNGB1|CCDS42169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNGB1|CCDS42169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	15	7	23	11	37	20	37	20	23	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729836507	16	64304784	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	64304784	64304794	1	12	266.257	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	15	13	0	0	./.	2	3	2	3	21	27	21	27	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729844256	16	85839548	ACCTCC	A	638	PASS	COX4I1	CCDS10955.1	r.?	-	-	Del	intronic	D	85839548	85839554	5	143	1185.02	-	-	1	1	1	COX4I1|CCDS10955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COX4I1|CCDS10955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	10	12	12	14	21	29	21	29	12	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729845042	16	88269736	AG	A	353	PASS	-	-	-	-	-	Del	-	D	88269736	88269738	1	22	593.713	-	-	1	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	10	1	13	2	38	28	38	28	13	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729845116	16	88599847	GC	G	1500	PASS	ZFPM1	CCDS32502.1	r.1804delC	c.1482delC	p.A496fs*302	Del	frameshift	D	88599847	88599852	1	182	1345.13	-	-	4	1	1	ZFPM1|CCDS32502.1|r.1804delC|c.1482delC|p.A496fs*302|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZFPM1|CCDS32502.1|r.1804delC|c.1482delC|p.A496fs*302|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	8	12	8	0	0	./.	12	13	15	17	22	26	22	26	15	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729851157	17	9275802	A	AT	898	PASS	STX8	CCDS32565.1	r.?	-	-	Ins	intronic	I	9275802	9275811	1	65	850.938	-	-	8	1	1	STX8|CCDS32565.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STX8|CCDS32565.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	9	10	0	0	./.	12	4	15	10	49	32	49	32	15	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729853636	17	13892470	GAAAAATCA	G	870	PASS	-	-	-	-	-	Del	-	D	13892470	13892479	8	220	1619.22	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	9	21	9	22	29	49	29	49	9	22	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729857443	17	21223076	GCT	G	1200	PASS	MAP2K3	CCDS11218.1	r.?	-	-	Del	downstream	D	21223076	21223080	2	117	1074.06	-	-	1	1	1	MAP2K3|CCDS11218.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MAP2K3|CCDS11218.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	39	32	39	32	0	0	./.	12	8	16	15	102	132	102	132	16	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729860808	17	29063328	AGAGGCGCCCCTCACCTCCCGGACG	A	319	PASS	AC127024.1	ENST00000499895	r.?	-	-	Del	intronic	D	29063328	29063370	24	12	584.079	-	-	1	1	1	AC127024.1|ENST00000499895|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC127024.1|ENST00000499895|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	11	0	10	0	39	34	40	34	12	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729865365	17	37717266	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	37717266	37717276	1	16	319.027	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	3	3	3	36	45	37	46	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729866155	17	39233102	AAAGGAAGAAGGGAAGGAAGGAAGAAGGGAAGG	AAAGGAAGAAAGG	360	PASS	-	-	-	-	-	Complex	-	DI	39233103	39233134	32	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	1	5	0	0	16	48	16	48	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729866421	17	39852784	GTTCA	G	300	PASS	EIF1	CCDS11403.1	r.?	-	-	Del	downstream	D	39852784	39852810	4	12	269.869	-	-	6	1	-	EIF1|CCDS11403.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EIF1|CCDS11403.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	3	2	34	35	34	35	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729866569	17	40050887	AC	A	1380	PASS	ACLY	CCDS11412.1	r.?	-	-	Del	intronic	D	40050887	40050892	1	150	1237.79	-	-	4	1	1	ACLY|CCDS11412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACLY|CCDS11412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	9	14	14	20	34	45	34	45	14	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729869628	17	45293476	TC	T	300	PASS	MYL4	CCDS11510.1	r.?	-	-	Del	intronic	D	45293476	45293482	1	12	266.257	-	-	5	1	1	MYL4|CCDS11510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYL4|CCDS11510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	2	3	2	3	29	37	29	37	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729870529	17	46765511	TG	T	360	PASS	-	-	-	-	-	Del	-	D	46765511	46765515	1	16	319.629	-	-	3	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	6	4	30	47	30	47	6	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729873248	17	52174587	CA	C	1020	PASS	-	-	-	-	-	Del	-	D	52174587	52174589	1	90	917.555	-	-	1	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	9	8	12	16	31	46	31	46	12	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729876189	17	58228015	TAAAAAAAAAAAAAAAAAAAAA	T	261	PASS	CA4	CCDS11624.1	r.?	-	-	Del	intronic	D	58228015	58228052	21	28	474.927	-	-	1	1	-	CA4|CCDS11624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA4|CCDS11624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	3	8	3	0	0	./.	6	3	8	4	38	16	38	18	8	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729877470	17	60454403	TAG	T	420	PASS	ENSG00000172421	CCDS45751.1	r.?	-	-	Del	intronic	D	60454403	60454422	2	14	377.817	-	-	9	1	1	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	6	1	6	1	26	42	26	42	6	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729880881	17	66695447	G	GT	890	PASS	-	-	-	-	-	Ins	-	I	66695447	66695456	1	70	800.577	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	14	8	0	0	./.	6	9	11	14	51	48	51	48	11	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729881942	17	69088894	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	69088894	69088904	1	12	266.859	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	3	2	3	2	42	43	42	43	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729884698	17	74162631	G	GA	300	PASS	RNF157	CCDS32740.1	r.?	-	-	Ins	intronic	I	74162631	74162641	1	10	265.655	-	-	9	1	1	RNF157|CCDS32740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF157|CCDS32740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	24	10	24	0	0	./.	4	1	5	1	56	43	56	43	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729887837	17	80035996	CCG	C	300	PASS	FASN	CCDS11801.1	r.?	-	-	Del	downstream	D	80035996	80036000	2	6	258.43	-	-	1	1	1	FASN|CCDS11801.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ENSG00000236696|ENST00000426190|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	0	7	0	67	32	67	32	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729895739	18	14481902	TAATA	T	594	PASS	-	-	-	-	-	Del	-	D	14481902	14481911	4	54	702.483	-	-	2	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	5	8	7	8	35	32	35	32	7	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729896726	18	18868221	G	GA	300	PASS	GREB1L	CCDS45836.1	r.?	-	-	Ins	intronic	I	18868221	18868231	1	12	264.767	-	-	9	1	1	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	3	2	3	2	47	43	48	45	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729902284	18	32022509	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	32022509	32022519	1	6	265.971	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	0	5	0	59	48	59	48	5	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729903582	18	35554859	CT	C	720	PASS	-	-	-	-	-	Del	-	D	35554859	35554861	1	48	648.446	-	-	1	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	7	5	17	10	48	32	48	32	17	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729904999	18	39205591	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	39205591	39205609	2	12	269.584	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	3	2	46	32	46	32	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729905012	18	39236449	TAC	T	420	PASS	-	-	-	-	-	Del	-	D	39236449	39236466	2	20	378.26	-	-	8	1	-	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	3	4	3	4	43	55	43	55	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729905103	18	39458536	CT	C	360	PASS	-	-	-	-	-	Del	-	D	39458536	39458538	1	15	324.223	-	-	1	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	4	2	5	3	56	32	56	32	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729905555	18	40470534	AAG	A	300	PASS	RIT2	CCDS11921.1	r.?	-	-	Del	intronic	D	40470534	40470550	2	12	270.186	-	-	7	1	1	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	4	3	61	26	61	26	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729915145	18	63306093	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	63306093	63306101	1	20	372.842	-	-	7	1	1	-	-	./.	0	0	0	0	23	24	23	24	0	0	./.	4	3	5	3	41	38	41	39	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729916571	18	66057143	A	AT	1260	PASS	-	-	-	-	-	Ins	-	I	66057143	66057152	1	132	1104.08	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	11	10	16	14	49	48	50	49	16	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729921316	18	76753371	AG	A	1200	PASS	SALL3	CCDS12013.1	r.1381delG	c.1381delG	p.G461fs*3	Del	frameshift	D	76753371	76753374	1	117	1074.72	-	-	2	1	1	SALL3|CCDS12013.1|r.1381delG|c.1381delG|p.G461fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SALL3|CCDS12013.1|r.1381delG|c.1381delG|p.G461fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	9	6	9	0	0	./.	8	12	9	14	25	48	25	48	9	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729925720	19	6609479	TA	T	360	PASS	-	-	-	-	-	Del	-	D	6609479	6609484	1	15	318.843	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	7	4	45	35	45	35	7	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729927267	19	8783538	AT	A	1440	PASS	-	-	-	-	-	Del	-	D	8783538	8783541	1	168	1295.84	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	13	11	19	15	52	41	52	41	19	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729928736	19	10936350	AAG	A	360	PASS	DNM2	CCDS45969.1	r.?	-	-	Del	intronic	D	10936350	10936370	2	15	321.251	-	-	9	1	1	DNM2|CCDS45969.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM2|CCDS45969.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	2	5	46	41	46	41	2	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729930235	19	13178610	AAT	A	269	PASS	NFIX	CCDS45996.1	r.?	-	-	Del	intronic	D	13178610	13178627	2	6	270.218	-	-	8	1	1	NFIX|CCDS45996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFIX|CCDS45996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	0	6	0	54	38	54	38	6	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729930491	19	13538759	G	GT	389	PASS	CACNA1A	CCDS45998.1	r.?	-	-	Ins	intronic	I	13538759	13538769	1	20	365.662	-	-	9	1	1	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	17	19	0	0	./.	3	4	4	4	40	49	40	50	4	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729932074	19	15807600	TTC	T	300	PASS	CYP4F12	CCDS42517.1	r.?	-	-	Del	intronic	D	15807600	15807615	2	12	270.218	-	-	7	1	1	CYP4F12|CCDS42517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP4F12|CCDS42517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	2	3	2	48	38	48	38	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729933000	19	17162903	T	TCATGA	298	PASS	HAUS8	CCDS32948.1	r.?	-	-	Ins	intronic	I	17162903	17162912	5	16	305.598	-	-	1	1	1	HAUS8|CCDS32948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HAUS8|CCDS32948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	3	4	3	60	25	60	25	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729936798	19	22698764	C	CCT	449	PASS	-	-	-	-	-	Ins	-	I	22698764	22698765	2	16	408.266	-	-	0	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	7	0	1	25	51	25	52	1	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729937552	19	23868468	A	AT	1260	PASS	ZNF675	CCDS32981.1	r.?	-	-	Ins	intronic	I	23868468	23868476	1	130	1121.07	-	-	7	1	1	ZNF675|CCDS32981.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF675|CCDS32981.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	12	9	12	9	41	41	41	41	12	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729942908	19	37356976	GGT	G	360	PASS	-	-	-	-	-	Del	-	D	37356976	37356991	2	15	324.262	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	2	4	2	75	43	75	43	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729953438	19	54605308	CT	C	300	PASS	OSCAR	CCDS12876.1	r.?	-	-	Del	upstream	D	54605308	54605318	1	6	264.197	-	-	9	1	1	OSCAR|CCDS12876.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	OSCAR|ENST00000284648|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	0	5	0	1	41	51	41	51	0	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729956146	19	58969692	ACCTG	A	1103	PASS	ZNF324B	CCDS33138.1	r.?	-	-	Del	downstream	D	58969692	58969697	4	144	1171.5	-	-	1	1	1	ZNF324B|CCDS33138.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ZNF324B|CCDS33138.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	6	10	6	10	0	0	./.	11	11	18	11	52	35	52	35	18	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729958406	2	5827132	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	5827132	5827150	2	12	265.453	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	2	2	2	53	44	53	44	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729958501	2	6045783	TAATTAAACC	T	638	PASS	-	-	-	-	-	Del	-	D	6045783	6045797	9	80	1176.18	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	19	3	21	5	62	28	63	28	22	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729959484	2	8760531	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	8760531	8760547	2	12	267.861	-	-	7	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	2	3	3	36	70	36	70	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729963288	2	16683099	AC	A	960	PASS	-	-	-	-	-	Del	-	D	16683099	16683101	1	80	855.951	-	-	1	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	9	7	12	12	42	39	42	39	12	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729965521	2	23293137	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	23293137	23293147	1	78	892.665	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	12	5	16	7	57	19	58	20	16	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729972916	2	38445261	T	TATTTTTCTTTCTTTCC	360	PASS	-	-	-	-	-	Ins	-	I	38445261	38445262	16	12	262.431	-	-	0	1	1	-	-	./.	0	0	0	0	11	18	12	18	0	0	./.	1	5	0	0	53	39	55	39	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729977620	2	48306801	TA	T	1080	PASS	-	-	-	-	-	Del	-	D	48306801	48306803	1	84	962.493	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	13	10	18	25	42	25	42	10	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729980584	2	55648752	C	CT	960	PASS	CCDC88A	CCDS33203.1	r.?	-	-	Ins	upstream	I	55648752	55648760	1	77	843.307	-	-	7	1	1	CCDC88A|CCDS33203.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CCDC88A|CCDS33203.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	6	17	6	17	0	0	./.	10	6	11	11	41	39	41	39	11	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729981747	2	58680978	T	TC	540	PASS	-	-	-	-	-	Ins	-	I	58680978	58680979	1	24	475.527	-	-	0	1	-	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	7	2	16	10	43	44	43	46	16	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729983419	2	62130809	T	TC	960	PASS	COMMD1	CCDS1869.1	r.?	-	-	Ins	upstream	I	62130809	62130813	1	80	829.46	-	-	3	1	1	COMMD1|CCDS1869.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	COMMD1|CCDS1869.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	11	11	11	12	0	0	./.	7	9	16	15	41	32	42	33	16	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729983941	2	63351008	G	GTA	480	PASS	C2orf86	CCDS42688.1	r.?	-	-	Ins	intronic	I	63351008	63351023	2	21	415.934	-	-	7	1	1	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	20	0	0	./.	6	2	10	6	53	31	54	36	10	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729984986	2	65461044	C	CT	300	PASS	ACTR2	CCDS1881.1	r.?	-	-	Ins	intronic	I	65461044	65461054	1	12	258.83	-	-	9	1	1	ACTR2|CCDS1881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACTR2|CCDS1881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	2	3	2	2	36	55	36	55	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729989892	2	76686177	GGT	G	360	PASS	-	-	-	-	-	Del	-	D	76686177	76686196	2	12	320.229	-	-	9	1	-	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	1	5	2	55	31	55	31	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729991204	2	79887640	TG	T	900	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	79887640	79887642	1	72	802.379	-	-	1	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	8	7	11	9	41	41	41	41	11	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729992270	2	83198775	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	83198775	83198782	1	56	687.407	-	-	6	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	7	6	10	9	42	29	42	29	10	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729994319	2	87943196	GC	G	276	PASS	-	-	-	-	-	Del	-	D	87943196	87943200	1	13	642.866	-	-	3	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	12	0	14	0	35	30	35	30	14	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2729995076	2	89936262	C	CA	1265	PASS	-	-	-	-	-	Ins	-	I	89936262	89936272	1	135	1156.91	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	8	14	12	19	41	53	41	53	12	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730000427	2	103865799	A	AT	1289	PASS	-	-	-	-	-	Ins	-	I	103865799	103865806	1	144	1164.14	-	-	6	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	11	11	14	15	35	50	35	50	14	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730000930	2	105202751	AG	A	300	PASS	-	-	-	-	-	Del	-	D	105202751	105202753	1	6	267.861	-	-	1	1	-	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	0	6	0	46	25	46	25	6	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730002321	2	108611630	TTAGGCTACAAACCTGTGCAACATGTTACTGCACTGAATACTATAGGCAATTGTAA	T	377	PASS	SLC5A7	CCDS2074.1	r.?	-	-	Del	intronic	D	108611630	108611688	55	56	696.438	-	-	1	1	1	SLC5A7|CCDS2074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC5A7|CCDS2074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	6	1	0	27	31	33	37	7	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730005540	2	116866273	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	116866273	116866283	1	16	308.188	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	3	3	3	42	46	43	46	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730005648	2	117125826	GT	G	480	PASS	-	-	-	-	-	Del	-	D	117125826	117125835	1	24	426.771	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	5	8	6	45	53	45	53	8	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730009232	2	125993408	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	125993408	125993418	1	10	264.249	-	-	9	1	1	-	-	./.	0	0	0	0	14	21	14	22	0	0	./.	1	4	1	5	44	50	44	50	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730015935	2	140620374	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	140620374	140620387	2	10	266.055	-	-	6	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	1	4	1	4	27	59	27	59	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730017776	2	144800846	CAT	C	300	PASS	GTDC1	CCDS33300.1	r.?	-	-	Del	intronic	D	144800846	144800861	2	10	267.861	-	-	7	1	1	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	2	4	28	51	28	51	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730017869	2	145118472	TC	T	300	PASS	-	-	-	-	-	Del	-	D	145118472	145118474	1	6	266.055	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	0	6	0	40	49	40	49	6	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730018300	2	146314007	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	146314007	146314027	2	12	267.259	-	-	9	1	-	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	3	3	38	44	38	44	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730019981	2	150743063	C	CA	1140	PASS	-	-	-	-	-	Ins	-	I	150743063	150743070	1	98	1005.83	-	-	6	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	13	6	16	12	42	48	42	48	16	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730021474	2	154013998	CTTA	C	747	PASS	-	-	-	-	-	Del	-	D	154013998	154014005	3	64	750.01	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	7	7	10	12	28	39	28	39	10	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730022074	2	155617065	TTC	T	329	PASS	KCNJ3	CCDS2200.1	r.?	-	-	Del	intronic	D	155617065	155617081	2	15	320.831	-	-	7	1	-	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	4	2	37	51	37	51	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730024480	2	161317766	AAG	A	300	PASS	RBMS1	CCDS2213.1	r.?	-	-	Del	intronic	D	161317766	161317785	2	12	266.055	-	-	9	1	1	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	3	2	3	4	36	46	36	46	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730025940	2	165488844	AATTG	A	1287	PASS	-	-	-	-	-	Del	-	D	165488844	165488853	4	150	1228.55	-	-	2	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	14	9	18	13	40	37	40	37	18	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730029987	2	173948269	T	TA	300	PASS	ENSG00000091436	CCDS2251.1	r.?	-	-	Ins	intronic	I	173948269	173948279	1	10	264.851	-	-	9	1	1	ENSG00000091436|CCDS2251.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000091436|CCDS2251.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	14	10	0	0	./.	4	1	4	1	63	29	63	29	4	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730031064	2	176150788	G	GT	1320	PASS	-	-	-	-	-	Ins	-	I	176150788	176150797	1	128	1165.34	-	-	8	1	1	-	-	./.	0	0	0	0	13	22	13	23	0	0	./.	15	7	18	8	47	39	47	39	18	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730033616	2	182715330	T	TA	1320	PASS	-	-	-	-	-	Ins	-	I	182715330	182715333	1	143	1164.74	-	-	2	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	10	12	14	16	50	38	50	38	14	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730033630	2	182756646	CCCT	C	300	PASS	SSFA2	CCDS46467.1	r.33_35delCCU	c.?	p.?	Del	5'UTR variant	D	182756646	182756670	3	10	267.861	-	-	7	1	1	SSFA2|CCDS46467.1|r.33_35delCCU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	SSFA2|CCDS46467.1|r.33_35delCCU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	10	12	10	12	0	0	./.	4	1	4	1	55	19	55	19	4	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730033851	2	183330767	TTG	T	329	PASS	PDE1A	CCDS2285.1	r.?	-	-	Del	intronic	D	183330767	183330785	2	16	308.188	-	-	8	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	3	3	3	34	40	34	40	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730037417	2	191991331	A	AT	300	PASS	STAT4	CCDS2310.1	r.?	-	-	Ins	intronic	I	191991331	191991341	1	12	261.84	-	-	9	1	1	STAT4|CCDS2310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STAT4|CCDS2310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	23	10	23	0	0	./.	3	2	3	2	51	46	51	47	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730038345	2	194520695	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	194520695	194520705	1	12	264.249	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	6	3	39	62	39	62	6	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730040377	2	199150032	GT	G	1318	PASS	-	-	-	-	-	Del	-	D	199150032	199150038	1	156	1229.75	-	-	5	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	12	11	12	19	39	46	39	46	12	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730041246	2	201239028	T	TA	720	PASS	SPATS2L	CCDS46483.1	r.?	-	-	Ins	intronic	I	201239028	201239030	1	48	635.641	-	-	1	1	1	SPATS2L|CCDS46483.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SPATS2L|CCDS46483.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	5	7	6	7	46	25	46	25	6	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730041663	2	202055014	TAC	T	300	PASS	CASP10	CCDS2340.1	r.?	-	-	Del	intronic	D	202055014	202055032	2	12	264.851	-	-	8	1	-	CASP10|CCDS2340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASP10|CCDS2340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	3	2	44	38	44	38	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730045169	2	208991052	C	CT	1889	PASS	CRYGC	CCDS2379.1	r.?	-	-	Ins	downstream	I	208991052	208991058	1	288	1681.8	-	-	5	1	1	CRYGC|CCDS2379.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CRYGD|CCDS2378.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	16	17	16	0	0	./.	15	17	19	19	47	46	48	46	19	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730045308	2	209136964	AT	A	420	PASS	PIKFYVE	CCDS2382.1	r.?	-	-	Del	intronic	D	209136964	209136966	1	20	368.985	-	-	1	1	1	PIKFYVE|CCDS2382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIKFYVE|CCDS2382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	4	4	4	46	44	46	44	4	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730047174	2	213967974	TAG	T	840	PASS	IKZF2	CCDS2395.1	r.?	-	-	Del	intronic	D	213967974	213967982	2	55	749.408	-	-	3	1	1	IKZF2|CCDS2395.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IKZF2|CCDS2395.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	10	7	10	29	28	29	28	7	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730048510	2	216803188	C	CAT	300	PASS	MREG	ENST00000236976	r.?	-	-	Ins	downstream	I	216803188	216803203	2	12	258.228	-	-	7	1	-	MREG|ENST00000236976|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MREG|ENST00000236976|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	3	3	60	44	60	44	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730049183	2	218407270	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	218407270	218407290	2	16	321.433	-	-	9	1	-	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	3	4	41	45	41	45	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730050604	2	221550681	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	221550681	221550699	2	10	267.259	-	-	8	1	-	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	1	4	1	4	45	48	45	48	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730051232	2	222960958	G	GT	1920	PASS	-	-	-	-	-	Ins	-	I	222960958	222960965	1	285	1691.43	-	-	6	1	1	-	-	./.	0	0	0	0	14	15	16	15	0	0	./.	14	18	17	20	47	50	48	51	17	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730053871	2	228609465	A	AT	1380	PASS	-	-	-	-	-	Ins	-	I	228609465	228609474	1	156	1211.69	-	-	8	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	11	12	14	15	47	53	48	53	14	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730056171	2	233468976	CG	C	1440	PASS	EFHD1	ENST00000409613	r.?	-	-	Del	upstream	D	233468976	233468978	1	168	1278.51	-	-	1	1	1	EFHD1|ENST00000409613|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	EFHD1|ENST00000409613|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	10	13	10	0	0	./.	11	13	18	24	31	63	31	63	18	24	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730058563	2	238863312	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	238863312	238863313	1	10	257.626	-	-	0	1	-	-	-	./.	0	0	0	0	14	14	15	14	0	0	./.	4	1	6	3	55	29	55	30	6	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730058709	2	239171845	C	CAG	1589	PASS	PER2	CCDS2528.1	r.?	-	-	Ins	intronic	I	239171845	239171849	2	210	1410.93	-	-	1	1	1	PER2|CCDS2528.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PER2|CCDS2528.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	13	14	16	16	34	38	34	39	16	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730064909	20	9715873	AG	A	1409	PASS	PAK7	CCDS13107.1	r.?	-	-	Del	intronic	D	9715873	9715876	1	169	1293.44	-	-	2	1	1	PAK7|CCDS13107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAK7|CCDS13107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	12	12	16	15	42	35	42	35	16	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730066237	20	12879478	TAG	T	269	PASS	-	-	-	-	-	Del	-	D	12879478	12879498	2	12	265.301	-	-	9	1	-	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	3	3	46	34	46	34	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730069107	20	19399105	G	GA	1320	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Ins	intronic	I	19399105	19399113	1	108	1177.32	-	-	7	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	21	5	21	0	0	./.	5	17	6	22	17	58	17	59	6	22	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730081549	20	46961980	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	46961980	46961989	1	48	636.483	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	7	5	14	9	38	41	38	43	14	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730082969	20	49618660	AAG	A	300	PASS	KCNG1	CCDS13436.1	r.?	-	-	Del	downstream	D	49618660	49618677	2	10	270.72	-	-	8	1	1	KCNG1|CCDS13436.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNG1|CCDS13436.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	18	15	18	0	0	./.	4	1	4	1	48	52	48	52	4	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730085018	20	53436906	GTA	G	360	PASS	-	-	-	-	-	Del	-	D	53436906	53436918	2	7	324.864	-	-	5	1	-	-	-	./.	0	0	0	0	10	1	10	1	0	0	./.	6	0	12	0	30	0	30	0	12	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730085890	20	55367277	GC	G	923	PASS	-	-	-	-	-	Del	-	D	55367277	55367280	1	108	1028.13	-	-	2	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	11	8	17	10	46	39	46	39	17	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730088273	20	61823649	GACTACAGGTGCCTGCCAACA	GGCAC	297	PASS	YTHDF1	CCDS13511.1	r.?	-	-	Complex	downstream	DI	61823650	61823669	20	40	0	-	-	0	1	1	YTHDF1|CCDS13511.1|r.?|-|-|protein_coding:indel:5KB_downstream_variant|SO:0000010:SO:1000032:SO:0001633	AL096828.1|ENST00000504036|r.?|-|-|non_protein_coding:intron:indel:intron_variant|SO:0000011:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	9	3	0	0	46	44	46	44	9	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730089064	21	9459079	TA	T	700	PASS	-	-	-	-	-	Del	-	D	9459079	9459084	1	115	1404.66	-	-	4	1	1	-	-	./.	0	0	0	0	71	61	71	63	0	0	./.	22	4	22	5	352	283	352	283	22	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730090069	21	9915874	C	CA	329	PASS	ENSG00000227328	ENST00000416067	r.?	-	-	Ins	intronic	I	9915874	9915879	1	49	643.027	-	-	4	1	1	ENSG00000227328|ENST00000416067|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000227328|ENST00000416067|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	37	56	37	58	0	0	./.	6	6	5	6	123	132	124	133	6	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730094308	21	16735424	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	16735424	16735432	1	16	321.514	-	-	7	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	3	9	7	29	24	29	24	9	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730094753	21	17949761	A	AATATATGTAAATTGTACAA	267	PASS	-	-	-	-	-	Ins	-	I	17949760	17949780	19	16	256.491	-	-	0	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	3	0	0	31	25	31	25	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730096912	21	22274880	TA	T	1020	PASS	-	-	-	-	-	Del	-	D	22274880	22274886	1	78	920.588	-	-	5	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	12	5	17	9	42	37	42	37	17	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730099599	21	27721265	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	27721265	27721275	1	12	267.928	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	2	3	1	3	52	39	53	40	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730107502	21	43197738	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	43197738	43197754	2	6	270.938	-	-	7	1	-	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	0	5	0	47	25	47	25	5	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730109944	22	16867399	CCGGCTTTTTGCTCCGCCGCCGCCGCGGCTTTTTGCCCCCCACCCCCGCCGCTGCGGCTTTTTACCCGCCGCGGCTTTTTGCCCCCCCGCCGCCGTGGTTTTTTCCCCCCATCTCACCTCCGCTTTTTGCCCGCCGCGGCTTTTTGCCCCCACCCCGCCTCGGCTTTTTGCCAGCCA	C	305	PASS	-	-	-	-	-	Del	-	D	16867399	16867587	176	42	585.439	-	-	1	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	5	6	0	0	26	40	28	43	5	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730110154	22	16986086	C	CA	715	PASS	-	-	-	-	-	Ins	-	I	16986086	16986094	1	70	805.934	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	14	0	0	./.	9	6	9	15	45	48	45	48	9	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730116425	22	29488386	TAGAC	T	867	PASS	KREMEN1	CCDS43000.1	r.?	-	-	Del	intronic	D	29488386	29488394	4	77	869.938	-	-	1	1	1	KREMEN1|CCDS43000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KREMEN1|CCDS43000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	6	10	8	14	28	41	28	41	8	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730117461	22	31333544	C	CG	1440	PASS	MORC2	CCDS33636.1	r.?	-	-	Ins	intronic	I	31333544	31333552	1	169	1276.01	-	-	7	1	1	MORC2|CCDS33636.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MORC2|CCDS33636.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	12	12	17	15	53	37	53	37	17	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730118067	22	32108114	TGAAGA	T	1165	PASS	C22orf30	CCDS13900.2	r.5896_5900delUCUUC	c.5706_5710delTCTTC	p.L1903fs*32	Del	frameshift	D	32108114	32108127	5	135	1194.36	-	-	2	1	1	C22orf30|CCDS13900.2|r.5896_5900delUCUUC|c.5706_5710delTCTTC|p.L1903fs*32|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	C22orf30|CCDS13900.2|r.5896_5900delUCUUC|c.5706_5710delTCTTC|p.L1903fs*32|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	13	7	13	0	0	./.	14	8	17	9	51	26	51	26	17	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730122783	22	41354197	C	CA	1080	PASS	RBX1	CCDS14009.1	r.?	-	-	Ins	intronic	I	41354197	41354200	1	75	961.823	-	-	2	1	1	RBX1|CCDS14009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBX1|CCDS14009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	14	4	17	10	51	45	51	45	17	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730129250	3	3279141	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	3279141	3279151	1	10	261.733	-	-	9	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	1	4	1	4	45	47	46	47	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730135901	3	17669163	TGA	T	300	PASS	TBC1D5	CCDS33714.1	r.?	-	-	Del	intronic	D	17669163	17669183	2	12	267.152	-	-	9	1	1	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	2	3	1	3	55	43	55	43	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730139230	3	26600329	C	CA	1320	PASS	-	-	-	-	-	Ins	-	I	26600329	26600337	1	143	1166.32	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	20	0	0	./.	12	10	17	13	49	49	50	49	17	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730140470	3	29634517	GA	G	360	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29634517	29634519	1	12	311.792	-	-	1	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	5	1	5	1	36	31	36	31	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730141520	3	32289221	GAGATT	G	1256	PASS	CMTM8	CCDS2652.1	r.?	-	-	Del	intronic	D	32289221	32289228	5	114	1227.82	-	-	1	1	1	CMTM8|CCDS2652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CMTM8|CCDS2652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	18	7	18	32	61	32	61	7	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730151078	3	54035377	A	AT	459	PASS	-	-	-	-	-	Ins	-	I	54035377	54035384	1	20	530.691	-	-	6	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	9	1	13	7	39	37	39	37	13	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730151739	3	55974336	G	GA	300	PASS	ERC2	CCDS46851.1	r.?	-	-	Ins	intronic	I	55974336	55974346	1	12	264.744	-	-	9	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	3	2	42	37	42	37	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730152443	3	57276459	T	TTA	840	PASS	APPL1	CCDS2882.1	r.?	-	-	Ins	intronic	I	57276459	57276475	2	63	734.539	-	-	7	1	1	APPL1|CCDS2882.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	APPL1|CCDS2882.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	18	22	18	0	0	./.	8	6	11	10	45	61	46	61	11	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730154964	3	62657622	A	AT	960	PASS	CADPS	CCDS46858.1	r.?	-	-	Ins	intronic	I	62657622	62657631	1	56	848.504	-	-	8	1	1	CADPS|CCDS46858.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CADPS|CCDS46858.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	13	3	22	7	67	38	67	38	22	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730155659	3	64614049	CCTT	C	658	PASS	ADAMTS9	CCDS2903.1	r.?	-	-	Del	intronic	D	64614049	64614055	3	48	642.85	-	-	1	1	1	ADAMTS9|CCDS2903.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS9|CCDS2903.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	5	7	7	14	29	38	29	38	7	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730156563	3	66723171	C	CA	1320	PASS	-	-	-	-	-	Ins	-	I	66723171	66723178	1	140	1167.52	-	-	6	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	13	9	17	11	44	53	44	53	17	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730156722	3	67158687	T	TA	1018	PASS	-	-	-	-	-	Ins	-	I	67158687	67158696	1	99	943.806	-	-	8	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	10	8	14	14	42	33	42	34	14	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730157019	3	67953572	A	AT	340	PASS	-	-	-	-	-	Ins	-	I	67953572	67953581	1	18	370.882	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	5	4	6	16	29	16	29	4	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730157817	3	69833402	C	CT	660	PASS	MITF	CCDS43106.1	r.?	-	-	Ins	intronic	I	69833402	69833409	1	42	581.954	-	-	6	1	1	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	13	0	0	./.	5	6	7	12	30	55	30	55	7	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730160061	3	74981834	C	CT	665	PASS	-	-	-	-	-	Ins	-	I	74981834	74981844	1	45	633.819	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	8	4	11	36	51	37	51	4	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730160473	3	75708290	T	TC	290	PASS	-	-	-	-	-	Ins	-	I	75708290	75708296	1	32	530.691	-	-	5	1	1	-	-	./.	0	0	0	0	27	26	28	27	0	0	./.	7	3	22	7	119	74	119	74	22	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730166981	3	89412831	CGT	C	300	PASS	EPHA3	CCDS2922.1	r.?	-	-	Del	intronic	D	89412831	89412849	2	12	268.356	-	-	8	1	-	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	3	3	32	24	32	24	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730171593	3	104608040	TA	T	300	PASS	-	-	-	-	-	Del	-	D	104608040	104608050	1	10	267.152	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	4	1	49	35	49	35	4	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730172603	3	106936535	GTTTT	G	1138	PASS	-	-	-	-	-	Del	-	D	106936535	106936543	4	121	1071.02	-	-	7	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	10	10	12	13	34	41	34	41	12	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730175669	3	114184860	CAT	C	300	PASS	ZBTB20	CCDS2981.1	r.?	-	-	Del	intronic	D	114184860	114184875	2	10	268.356	-	-	7	1	-	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	1	4	1	4	43	53	43	53	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730176522	3	116412839	G	GA	300	PASS	LSAMP	ENST00000474851	r.?	-	-	Ins	intronic	I	116412839	116412849	1	12	265.346	-	-	9	1	1	LSAMP|ENST00000474851|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LSAMP|ENST00000474851|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	3	2	48	52	48	52	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730178240	3	120649026	TA	T	300	PASS	STXBP5L	CCDS43137.1	r.?	-	-	Del	intronic	D	120649026	120649028	1	6	264.142	-	-	1	1	1	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	5	0	5	0	31	39	31	39	5	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730180590	3	125895674	C	CA	1140	PASS	ALDH1L1	CCDS3034.1	r.?	-	-	Ins	intronic	I	125895674	125895679	1	104	1005.91	-	-	4	1	1	ALDH1L1|CCDS3034.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ALDH1L1|CCDS3034.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	7	12	13	13	38	51	38	52	13	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730180698	3	126163542	TTCA	T	1345	PASS	ZXDC	CCDS43146.1	r.?	-	-	Del	intronic	D	126163542	126163550	3	180	1339.37	-	-	2	1	1	ZXDC|CCDS43146.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ZXDC|CCDS43146.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	14	11	14	12	39	45	39	45	14	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730180956	3	127105971	TG	T	360	PASS	ENSG00000230883	ENST00000455379	r.?	-	-	Del	upstream	D	127105971	127105973	1	7	308.18	-	-	1	1	1	ENSG00000230883|ENST00000455379|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000230883|ENST00000455379|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	3	8	3	8	0	0	./.	0	6	0	10	14	50	14	50	0	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730181765	3	128910966	GTA	G	360	PASS	-	-	-	-	-	Del	-	D	128910966	128910980	2	16	322.027	-	-	6	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	3	36	44	36	44	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730186805	3	141219712	A	AT	960	PASS	RASA2	CCDS3117.1	r.?	-	-	Ins	intronic	I	141219712	141219721	1	65	846.698	-	-	8	1	1	RASA2|CCDS3117.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RASA2|CCDS3117.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	4	12	10	20	31	52	33	52	10	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730187748	3	143048838	G	GA	1260	PASS	SLC9A9	CCDS33872.1	r.?	-	-	Ins	intronic	I	143048838	143048847	1	112	1113.85	-	-	8	1	1	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	15	6	17	11	55	43	55	43	17	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730194167	3	158306399	A	AAC	300	PASS	MLF1	CCDS46945.1	r.?	-	-	Ins	intronic	I	158306399	158306401	2	6	262.335	-	-	0	1	-	MLF1|CCDS46945.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MLF1|CCDS46945.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	8	7	0	0	./.	5	0	1	0	57	38	57	39	6	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730196094	3	163171411	TC	T	1469	PASS	-	-	-	-	-	Del	-	D	163171411	163171413	1	176	1341.18	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	15	10	18	11	47	30	47	30	18	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730200472	3	173975510	AAT	A	300	PASS	NLGN1	CCDS3222.1	r.?	-	-	Del	intronic	D	173975510	173975529	2	6	268.356	-	-	9	1	1	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	0	5	1	6	31	37	31	37	1	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730206858	3	187732344	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	187732344	187732363	2	12	266.55	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	2	45	45	45	45	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730207335	3	188643850	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	188643850	188643851	1	12	262.335	-	-	0	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	43	32	43	32	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730213533	4	3424289	GGGGACAAGGTACTGGGCCCGCCTGACCCTCGTGCTGCCCTCAGGCCATGACCTCCCCGCTCCCTGGCCCCCAGCTTTGTCAGAGTCCTCAGGCTGCCCCCTCCTGCGCTCCTCATTTCAACAGCGCCTGGGGCGGAGGCCGGATT	G	406	PASS	RGS12	CCDS3366.1	r.3930_3937+137del145	c.3026_3033+137del145	p.?	Del	ess splice	D	3424289	3424435	145	55	751.082	-	-	1	1	1	RGS12|CCDS3366.1|r.3930_3937+137del145|c.3026_3033+137del145|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	RGS12|CCDS3366.1|r.3930_3937+137del145|c.3026_3033+137del145|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	14	9	14	9	0	0	./.	4	10	0	0	31	25	35	35	4	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730215088	4	6906818	TGGGACTACAGGCGGCCGCCACCACGTTGGCTATTTTTTTGTGTG	TACAGGTGCCCGCCTCAACGCCCGGCTAATTTTTTGTA	407	PASS	TBC1D14	CCDS3394.2	r.?	-	-	Complex	upstream	DI	6906819	6906862	44	40	0	-	-	0	1	1	TBC1D14|CCDS3394.2|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	TBC1D14|CCDS3394.2|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	2	13	2	13	0	0	./.	7	4	0	0	35	28	42	32	7	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730217823	4	14050925	A	AT	1140	PASS	-	-	-	-	-	Ins	-	I	14050925	14050933	1	104	1006.68	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	13	0	0	./.	7	12	15	14	36	46	36	46	15	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730218133	4	14768487	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	14768487	14768503	2	15	321.892	-	-	7	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	4	2	6	2	38	41	38	41	6	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730229894	4	40826513	A	AT	300	PASS	APBB2	CCDS3837.1	r.?	-	-	Ins	intronic	I	40826513	40826523	1	12	265.233	-	-	9	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	16	24	17	0	0	./.	3	2	3	2	32	67	32	67	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730231818	4	45380732	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	45380732	45380742	1	12	263.427	-	-	9	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	2	3	2	4	47	49	48	49	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730232007	4	45913875	TA	T	300	PASS	-	-	-	-	-	Del	-	D	45913875	45913877	1	6	247.172	-	-	1	1	-	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	5	0	21	0	35	28	35	28	21	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730232280	4	46838364	T	TA	780	PASS	COX7B2	CCDS3472.2	r.?	-	-	Ins	intronic	I	46838364	46838371	1	56	689.607	-	-	6	1	1	COX7B2|CCDS3472.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	COX7B2|CCDS3472.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	6	7	11	14	34	45	34	45	11	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730235465	4	54906714	A	AT	1560	PASS	CHIC2	CCDS3493.1	r.?	-	-	Ins	intronic	I	54906714	54906715	1	192	1376.2	-	-	0	1	1	CHIC2|CCDS3493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHIC2|CCDS3493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	11	15	13	17	33	53	33	54	13	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730237747	4	59669728	GC	G	900	PASS	-	-	-	-	-	Del	-	D	59669728	59669734	1	70	803.527	-	-	5	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	9	12	14	32	43	32	43	12	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730239387	4	63378542	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	63378542	63378545	1	35	530.467	-	-	2	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	6	4	12	4	37	30	37	30	12	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730239894	4	64605810	CTGTT	C	408	PASS	-	-	-	-	-	Del	-	D	64605810	64605818	4	54	1019.33	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	17	2	17	2	45	22	47	22	19	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730240443	4	66010759	CTT	C	1020	PASS	-	-	-	-	-	Del	-	D	66010759	66010763	2	90	910.824	-	-	3	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	9	8	13	13	32	38	32	38	13	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730240771	4	66725930	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	66725930	66725942	2	12	267.642	-	-	5	1	-	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	2	3	4	9	26	36	26	36	4	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730242240	4	70303356	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	70303356	70303366	1	15	312.862	-	-	9	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	2	5	2	48	49	48	49	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730245626	4	78179929	C	CA	444	PASS	-	-	-	-	-	Ins	-	I	78179929	78179938	1	84	953.636	-	-	8	1	1	-	-	./.	0	0	0	0	13	21	13	22	0	0	./.	5	13	4	16	26	45	27	45	5	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730246568	4	80556816	CA	C	329	PASS	-	-	-	-	-	Del	-	D	80556816	80556818	1	7	312.862	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	0	6	0	7	58	53	58	53	0	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730249051	4	86218086	C	CA	1680	PASS	-	-	-	-	-	Ins	-	I	86218086	86218094	1	224	1482.3	-	-	7	1	-	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	15	13	21	17	60	42	61	42	21	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730250649	4	89870603	G	GA	960	PASS	FAM13A	CCDS34029.1	r.?	-	-	Ins	intronic	I	89870603	89870613	1	77	847.543	-	-	9	1	1	FAM13A|CCDS34029.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM13A|CCDS34029.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	10	6	15	7	43	35	43	35	15	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730250983	4	90721493	T	TA	1380	PASS	SNCA	CCDS43252.1	r.?	-	-	Ins	intronic	I	90721493	90721496	1	156	1218.27	-	-	2	1	1	SNCA|CCDS43252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNCA|CCDS43252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	11	12	11	16	42	43	42	43	11	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730256614	4	104834503	A	AT	1260	PASS	-	-	-	-	-	Ins	-	I	104834503	104834511	1	120	1113.98	-	-	7	1	1	-	-	./.	0	0	0	0	12	25	12	25	0	0	./.	7	14	12	18	34	71	34	73	12	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730256623	4	104856767	AAGAG	A	960	PASS	-	-	-	-	-	Del	-	D	104856767	104856779	4	81	857.778	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	8	8	18	13	51	34	51	34	18	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730257970	4	108696791	G	GT	1529	PASS	-	-	-	-	-	Ins	-	I	108696791	108696800	1	195	1359.95	-	-	8	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	12	14	13	28	54	75	55	75	13	28	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730260621	4	115145454	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	115145454	115145462	1	72	795.7	-	-	7	1	1	-	-	./.	0	0	0	0	24	14	24	14	0	0	./.	8	7	15	12	37	47	37	47	15	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730264005	4	123246928	G	GT	360	PASS	KIAA1109	CCDS43267.1	r.?	-	-	Ins	intronic	I	123246928	123246935	1	15	313.464	-	-	6	1	1	KIAA1109|CCDS43267.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1109|ENST00000419325|r.4956_4957insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	14	14	14	15	0	0	./.	4	2	4	2	42	43	42	43	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730264163	4	123690720	C	CA	749	PASS	-	-	-	-	-	Ins	-	I	123690720	123690728	1	56	687.801	-	-	7	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	6	7	9	9	40	37	40	37	9	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730264250	4	123921123	TCTT	TTC	302	PASS	SPATA5	CCDS3730.1	r.?	-	-	Complex	intronic	DI	123921124	123921126	3	45	0	-	-	0	1	1	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	9	21	9	21	0	0	./.	4	8	0	0	43	66	43	66	4	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730264348	4	124074272	CCT	C	1140	PASS	SPATA5	CCDS3730.1	r.?	-	-	Del	intronic	D	124074272	124074277	2	110	1019.33	-	-	2	1	1	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	10	9	12	10	33	43	33	43	12	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730264906	4	125374939	T	TC	1260	PASS	-	-	-	-	-	Ins	-	I	125374939	125374946	1	132	1108.56	-	-	6	1	1	-	-	./.	0	0	0	0	6	14	7	14	0	0	./.	10	11	12	14	28	38	29	39	12	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730273556	4	146180136	TA	T	480	PASS	-	-	-	-	-	Del	-	D	146180136	146180140	1	24	428.588	-	-	3	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	3	8	7	29	47	29	47	8	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730273687	4	146509983	TTTA	T	300	PASS	-	-	-	-	-	Del	-	D	146509983	146510007	3	10	268.244	-	-	7	1	-	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	1	4	1	4	30	47	30	47	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730278284	4	157435954	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	157435954	157435964	1	12	264.631	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	4	2	59	43	59	43	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730279743	4	160720704	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	160720704	160720714	1	10	256.203	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	4	1	4	2	61	24	62	24	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730282543	4	166572290	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	166572290	166572300	1	12	318.28	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	1	5	1	6	50	41	50	41	1	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730284728	4	171301999	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	171301999	171302009	1	6	261.019	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	0	5	1	61	49	62	50	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730285205	4	172653859	C	CT	449	PASS	-	-	-	-	-	Ins	-	I	172653859	172653861	1	25	423.771	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	4	12	6	35	21	36	21	12	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730287134	4	177232533	C	CA	1500	PASS	-	-	-	-	-	Ins	-	I	177232533	177232542	1	170	1321.95	-	-	8	1	1	-	-	./.	0	0	0	0	19	15	20	15	0	0	./.	9	16	12	20	43	45	44	46	12	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730289410	4	181897197	ATAAT	A	1198	PASS	-	-	-	-	-	Del	-	D	181897197	181897204	4	120	1126.62	-	-	1	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	14	7	20	8	54	21	54	21	20	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730301346	5	14162914	C	CT	360	PASS	TRIO	CCDS3883.1	r.?	-	-	Ins	intronic	I	14162914	14162924	1	16	317.539	-	-	9	1	1	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	3	3	40	44	40	44	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730303715	5	19340810	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	19340810	19340819	1	35	531.238	-	-	8	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	4	6	6	8	34	35	35	35	6	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730303902	5	19770423	G	GA	300	PASS	CDH18	CCDS3652.1	r.?	-	-	Ins	intronic	I	19770423	19770433	1	12	262.007	-	-	9	1	1	CDH18|CCDS3652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	3	2	49	41	50	41	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730306860	5	26347571	CA	C	1200	PASS	-	-	-	-	-	Del	-	D	26347571	26347575	1	117	1071.51	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	12	8	13	12	40	38	40	38	13	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730307328	5	27594347	T	TA	960	PASS	-	-	-	-	-	Ins	-	I	27594347	27594354	1	77	849.981	-	-	6	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	10	6	10	10	34	26	34	27	10	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730308388	5	29837108	CCTT	C	656	PASS	-	-	-	-	-	Del	-	D	29837108	29837118	3	54	698.436	-	-	3	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	8	5	5	6	45	22	45	22	9	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730309739	5	32455990	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	32455990	32456009	2	12	268.629	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	3	3	38	46	38	46	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730314557	5	44066197	G	GT	1320	PASS	-	-	-	-	-	Ins	-	I	44066197	44066204	1	140	1168.12	-	-	6	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	9	13	10	19	27	58	27	58	10	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730314984	5	45655066	GT	G	1440	PASS	HCN1	CCDS3952.1	r.?	-	-	Del	intronic	D	45655066	45655073	1	168	1289.42	-	-	6	1	1	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	13	11	19	13	40	38	40	38	19	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730315883	5	51474333	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	51474333	51474334	1	12	258.394	-	-	0	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	2	4	2	36	41	36	42	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730316030	5	51925394	CCT	C	276	PASS	-	-	-	-	-	Del	-	D	51925394	51925410	2	15	322.355	-	-	7	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	2	4	2	4	52	33	52	33	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730319252	5	58819783	CCTGAAGCCTCCCCAGTCATGTGGAA	C	725	PASS	PDE4D	CCDS47213.1	r.?	-	-	Del	intronic	D	58819783	58819812	25	180	1340.14	-	-	1	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	11	14	8	10	39	28	42	32	11	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730320084	5	61184533	T	TTTGCA	840	PASS	-	-	-	-	-	Ins	-	I	61184533	61184539	5	55	708.814	-	-	1	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	4	10	7	13	55	32	56	32	7	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730320282	5	61687389	ATACAT	A	1221	PASS	DIMT1L	CCDS3981.1	r.?	-	-	Del	intronic	D	61687389	61687397	5	182	1341.94	-	-	1	1	1	DIMT1L|CCDS3981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIMT1L|CCDS3981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	13	12	20	17	41	47	41	47	20	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730320307	5	61728935	CTCT	C	1345	PASS	IPO11	CCDS34167.1	r.?	-	-	Del	intronic	D	61728935	61728944	3	176	1338.33	-	-	2	1	1	IPO11|CCDS34167.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IPO11|CCDS34167.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	15	10	21	14	47	39	47	39	21	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730322645	5	67445138	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	67445138	67445158	2	12	267.425	-	-	9	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	3	41	65	41	65	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730328892	5	81484868	A	AT	329	PASS	ATG10	CCDS4057.1	r.?	-	-	Ins	intronic	I	81484868	81484876	1	15	318.743	-	-	7	1	1	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	2	4	5	5	36	44	37	44	5	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730332793	5	91506360	T	TA	1589	PASS	-	-	-	-	-	Ins	-	I	91506360	91506366	1	180	1434.34	-	-	5	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	8	19	12	25	50	59	50	60	12	25	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730332903	5	91848449	CA	C	877	PASS	-	-	-	-	-	Del	-	D	91848449	91848456	1	52	805.888	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	12	3	15	4	68	22	68	22	15	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730333313	5	93248336	C	CA	960	PASS	MIR2277	CCDS4069.1	r.?	-	-	Ins	intronic	I	93248336	93248345	1	80	848.777	-	-	8	1	1	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	9	17	0	0	./.	7	9	9	16	45	66	45	66	9	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730333988	5	95040339	A	AAAAT	449	PASS	-	-	-	-	-	Ins	-	I	95040339	95040361	4	25	408.133	-	-	5	1	-	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	4	4	5	5	41	49	41	49	5	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730335384	5	98560768	GT	G	300	PASS	-	-	-	-	-	Del	-	D	98560768	98560770	1	6	268.629	-	-	1	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	12	0	36	12	36	12	12	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730335981	5	99914970	AT	A	1260	PASS	FAM174A	CCDS4090.1	r.?	-	-	Del	intronic	D	99914970	99914973	1	126	1128.24	-	-	2	1	1	FAM174A|CCDS4090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM174A|CCDS4090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	13	8	14	18	48	58	48	58	14	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730335996	5	99937001	C	CA	1200	PASS	-	-	-	-	-	Ins	-	I	99937001	99937009	1	85	1053.45	-	-	7	1	1	-	-	./.	0	0	0	0	9	20	9	21	0	0	./.	16	4	23	6	62	28	62	28	23	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730336260	5	100776680	CATT	C	1678	PASS	-	-	-	-	-	Del	-	D	100776680	100776686	3	228	1556.85	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	11	18	15	22	36	59	36	59	15	22	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730346978	5	126838523	T	TA	1560	PASS	-	-	-	-	-	Ins	-	I	126838523	126838530	1	196	1380.01	-	-	6	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	13	13	19	20	65	52	65	52	19	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730347370	5	127982493	TAC	T	269	PASS	FBN2	ENST00000508053	r.?	-	-	Del	intronic	D	127982493	127982513	2	12	265.017	-	-	9	1	-	FBN2|ENST00000508053|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FBN2|ENST00000508053|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	2	3	2	3	48	47	48	47	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730350187	5	135080500	GCAGGCAGATCA	G	522	PASS	-	-	-	-	-	Del	-	D	135080500	135080513	11	75	960.443	-	-	1	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	14	4	15	7	48	25	48	25	15	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730357219	5	152264119	C	CA	1140	PASS	-	-	-	-	-	Ins	-	I	152264119	152264128	1	110	1008.15	-	-	8	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	9	10	13	14	38	46	38	46	13	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730358138	5	154457458	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	154457458	154457476	2	12	267.425	-	-	8	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	3	5	37	54	37	54	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730361928	5	163240154	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	163240154	163240164	1	12	318.743	-	-	9	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	1	5	1	60	26	63	26	5	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730363497	5	166981867	GCTC	G	300	PASS	-	-	-	-	-	Del	-	D	166981867	166981893	3	6	268.027	-	-	8	1	-	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	0	5	0	48	47	48	47	5	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730366490	5	173842212	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	173842212	173842222	1	10	255.384	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	14	19	0	0	./.	1	4	5	4	42	53	42	53	5	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730369008	5	178741069	GT	G	420	PASS	ADAMTS2	CCDS4444.1	r.?	-	-	Del	intronic	D	178741069	178741072	1	8	374.275	-	-	2	1	1	ADAMTS2|CCDS4444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS2|CCDS4444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	7	0	9	0	56	63	56	63	9	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730369635	5	179743396	CA	C	1740	PASS	GFPT2	CCDS43411.1	r.1336delU	c.1217delT	p.L406fs*82	Del	frameshift	D	179743396	179743398	1	228	1556.24	-	-	1	1	1	GFPT2|CCDS43411.1|r.1336delU|c.1217delT|p.L406fs*82|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	GFPT2|CCDS43411.1|r.1336delU|c.1217delT|p.L406fs*82|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	15	17	16	0	0	./.	11	18	12	23	37	47	37	49	12	23	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730371722	6	3569809	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	3569809	3569829	2	10	267.383	-	-	9	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	1	4	1	4	54	36	54	36	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730374616	6	9711224	A	AT	1049	PASS	OFCC1	ENST00000460363	r.?	-	-	Ins	intronic	I	9711224	9711229	1	91	956.076	-	-	4	1	1	OFCC1|ENST00000460363|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OFCC1|ENST00000460363|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	12	6	14	10	42	29	43	29	14	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730381123	6	22404198	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	22404198	22404199	1	10	262.566	-	-	0	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	1	9	5	66	39	66	39	9	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730381944	6	24097215	TCAAAGGAGGGACACAGAAGAGG	T	551	PASS	-	-	-	-	-	Del	-	D	24097215	24097241	22	110	1019.43	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	9	10	5	8	25	28	29	30	9	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730384261	6	29237582	TG	T	1200	PASS	OR12D3	ENST00000396806	r.?	-	-	Del	intronic	D	29237582	29237584	1	117	1071.94	-	-	1	1	1	OR12D3|ENST00000396806|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OR12D3|ENST00000396806|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	8	12	17	14	44	48	44	48	17	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730384323	6	29478152	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	29478152	29478167	2	12	267.985	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	2	3	56	23	56	23	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730385094	6	30444982	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	30444982	30444991	1	63	741.808	-	-	8	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	8	6	16	8	45	37	46	37	16	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730387095	6	32857667	TTGTC	T	1552	PASS	AL669918.1	ENST00000499196	r.?	-	-	Del	upstream	D	32857667	32857674	4	247	1607.91	-	-	1	1	1	AL669918.1|ENST00000499196|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AL669918.1|ENST00000499196|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	13	16	13	16	0	0	./.	18	12	24	16	57	42	57	42	24	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730391857	6	42259448	T	TG	300	PASS	TRERF1	CCDS4867.1	r.?	-	-	Ins	intronic	I	42259448	42259449	1	12	260.76	-	-	0	1	1	TRERF1|CCDS4867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TRERF1|CCDS4867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	5	2	62	53	62	55	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730393928	6	46702599	GAA	G	269	PASS	PLA2G7	CCDS4917.1	r.?	-	-	Del	intronic	D	46702599	46702608	2	10	267.985	-	-	8	1	-	PLA2G7|CCDS4917.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLA2G7|CCDS4917.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	1	4	1	5	25	43	25	43	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730399803	6	62300030	AT	A	1500	PASS	-	-	-	-	-	Del	-	D	62300030	62300039	1	180	1339.32	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	11	14	15	18	37	44	37	44	15	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730400127	6	63364589	CATAG	C	1134	PASS	-	-	-	-	-	Del	-	D	63364589	63364598	4	144	1175.76	-	-	2	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	11	11	16	14	39	42	39	42	16	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730400478	6	64294406	ATG	A	300	PASS	PTP4A1	CCDS4965.1	r.?	-	-	Del	downstream	D	64294406	64294424	2	10	268.587	-	-	8	1	-	PTP4A1|CCDS4965.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PTP4A1|CCDS4965.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	21	15	21	0	0	./.	4	1	6	1	54	21	54	21	6	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730401039	6	66024006	CTG	C	276	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	66024006	66024022	2	10	267.383	-	-	7	1	-	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	1	4	25	44	25	44	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730404020	6	73015956	TCA	T	300	PASS	RIMS1	CCDS47449.1	r.?	-	-	Del	intronic	D	73015956	73015975	2	12	257.75	-	-	9	1	-	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	2	3	32	33	32	33	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730404707	6	74293238	TC	T	269	PASS	-	-	-	-	-	Del	-	D	74293238	74293240	1	6	257.75	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	0	7	0	57	38	57	38	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730405598	6	76430883	C	CA	269	PASS	SENP6	CCDS47454.1	r.?	-	-	Ins	downstream	I	76430883	76430893	1	12	265.577	-	-	9	1	1	SENP6|CCDS47454.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SENP6|CCDS47454.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	4	3	54	46	54	46	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730406147	6	77763965	T	TA	821	PASS	-	-	-	-	-	Ins	-	I	77763965	77763972	1	60	743.615	-	-	6	1	1	-	-	./.	0	0	0	0	14	15	14	16	0	0	./.	5	9	10	14	38	45	38	45	10	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730410174	6	88170506	TA	T	900	PASS	C6orf165	CCDS34498.1	r.?	-	-	Del	intronic	D	88170506	88170516	1	60	805.761	-	-	9	1	1	C6orf165|CCDS34498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf165|CCDS34498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	11	4	21	9	61	29	61	29	21	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730414885	6	99817179	AAT	A	300	PASS	COQ3	CCDS5042.1	r.?	-	-	Del	downstream	D	99817179	99817194	2	12	268.587	-	-	7	1	-	COQ3|CCDS5042.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	COQ3|CCDS5042.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	3	4	44	32	44	32	3	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730417648	6	106209540	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	106209540	106209549	1	27	529.949	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	8	2	11	6	32	20	33	20	11	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730418296	6	107422405	C	CA	1140	PASS	BEND3	CCDS34507.1	r.?	-	-	Ins	intronic	I	107422405	107422415	1	110	1006.18	-	-	9	1	1	BEND3|CCDS34507.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BEND3|CCDS34507.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	10	9	15	14	52	50	52	50	15	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730421484	6	114159766	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	114159766	114159781	2	10	267.383	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	4	1	4	34	30	34	30	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730432635	6	142178844	CATGCTCACTTGAG	C	841	PASS	-	-	-	-	-	Del	-	D	142178844	142178858	13	240	1554.79	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	15	14	15	14	42	47	42	47	15	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730436801	6	152241742	TTC	T	1440	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152241742	152241746	2	168	1288.62	-	-	1	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	11	13	19	17	51	36	51	36	19	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730437741	6	154219410	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	154219410	154219427	2	16	313.273	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	3	5	28	36	28	36	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730443128	6	165957822	AATG	A	1132	PASS	PDE10A	CCDS5289.1	r.?	-	-	Del	intronic	D	165957822	165957828	3	156	1235.5	-	-	1	1	1	PDE10A|CCDS5289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE10A|CCDS5289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	11	12	14	13	39	36	39	36	14	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730443778	6	167431871	ATG	A	257	PASS	FGFR1OP	CCDS5296.1	r.?	-	-	Del	intronic	D	167431871	167431887	2	12	264.975	-	-	7	1	1	FGFR1OP|CCDS5296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGFR1OP|CCDS5296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	3	2	3	2	41	30	41	30	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730445573	7	1188467	T	TG	300	PASS	ZFAND2A	CCDS5323.1	r.?	-	-	Ins	downstream	I	1188467	1188468	1	10	259.069	-	-	0	1	-	ZFAND2A|CCDS5323.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZFAND2A|CCDS5323.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	13	12	14	0	0	./.	1	4	2	5	36	49	37	49	2	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730447438	7	5039722	AG	A	300	PASS	RNF216L	ENST00000407429	r.?	-	-	Del	downstream	D	5039722	5039724	1	6	262.08	-	-	1	1	-	RNF216L|ENST00000407429|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RBAK|ENST00000407184|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	5	0	7	0	31	28	31	28	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730450750	7	11671283	G	GA	420	PASS	THSD7A	CCDS47543.1	r.?	-	-	Ins	intronic	I	11671283	11671293	1	8	367.754	-	-	9	1	1	THSD7A|CCDS47543.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD7A|CCDS47543.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	19	0	0	./.	0	7	0	7	31	61	31	62	0	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730452452	7	15285869	G	GT	1320	PASS	TMEM195	CCDS34604.1	r.?	-	-	Ins	intronic	I	15285869	15285876	1	44	1169.04	-	-	6	1	1	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	21	1	29	5	70	36	71	36	29	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730454256	7	19904940	G	GTA	600	PASS	-	-	-	-	-	Ins	-	I	19904940	19904954	2	36	524.159	-	-	6	1	1	-	-	./.	0	0	0	0	21	33	21	33	0	0	./.	5	5	10	11	55	42	55	42	10	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730454516	7	20667521	TCTTAA	T	598	PASS	ABCB5	CCDS5371.1	r.?	-	-	Del	intronic	D	20667521	20667531	5	42	591.145	-	-	1	1	1	ABCB5|CCDS5371.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABCB5|CCDS5371.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	6	6	9	33	28	33	28	6	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730454756	7	20959974	T	TA	989	PASS	-	-	-	-	-	Ins	-	I	20959974	20959984	1	88	901.546	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	17	0	0	./.	7	10	9	18	31	68	31	68	9	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730455648	7	22935780	TA	T	480	PASS	-	-	-	-	-	Del	-	D	22935780	22935788	1	24	429.923	-	-	7	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	3	5	5	7	36	41	36	41	5	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730456899	7	25610912	CATT	C	1558	PASS	-	-	-	-	-	Del	-	D	25610912	25610919	3	210	1450.39	-	-	2	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	13	14	14	20	33	40	33	40	14	20	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730457551	7	27216146	AG	A	1589	PASS	HOXA11	CCDS5411.1	r.?	-	-	Del	downstream	D	27216146	27216148	1	198	1450.39	-	-	1	1	1	HOXA11|CCDS5411.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MIR196B|CCDS43560.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	10	17	13	33	35	56	35	56	13	33	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730459045	7	30632957	G	GA	360	PASS	GARS	CCDS43564.1	r.?	-	-	Ins	upstream	I	30632957	30632967	1	15	312.208	-	-	9	1	1	GARS|CCDS43564.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	AC006978.1|ENST00000507825|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	2	4	2	4	55	64	56	64	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730459569	7	32140474	G	GA	300	PASS	PDE1C	ENST00000396193	r.?	-	-	Ins	intronic	I	32140474	32140484	1	10	265.09	-	-	9	1	1	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	1	4	1	4	45	41	46	42	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730460907	7	35071404	TA	T	2040	PASS	DPY19L1	CCDS43567.1	r.?	-	-	Del	intronic	D	35071404	35071409	1	320	1822.36	-	-	4	1	1	DPY19L1|CCDS43567.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPY19L1|CCDS43567.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	15	19	18	28	44	59	44	59	18	28	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730467091	7	49299965	C	CA	1080	PASS	-	-	-	-	-	Ins	-	I	49299965	49299975	1	99	955.287	-	-	9	1	1	-	-	./.	0	0	0	0	23	17	25	17	0	0	./.	8	10	11	16	48	58	50	58	11	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730468653	7	53198949	T	TG	256	PASS	-	-	-	-	-	Ins	-	I	53198949	53198952	1	16	424.505	-	-	2	1	1	-	-	./.	0	0	0	0	31	16	32	16	0	0	./.	7	1	10	1	93	52	95	52	10	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730468700	7	53226558	GATAC	G	268	PASS	-	-	-	-	-	Del	-	D	53226558	53226566	4	35	537.404	-	-	1	1	1	-	-	./.	0	0	0	0	24	35	24	35	0	0	./.	4	6	4	6	54	133	54	133	4	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730469521	7	55051074	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	55051074	55051084	1	12	263.886	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	3	2	3	2	53	52	53	55	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730471862	7	61542801	CA	C	1320	PASS	-	-	-	-	-	Del	-	D	61542801	61542803	1	143	1181.09	-	-	1	1	1	-	-	./.	0	0	0	0	36	32	36	32	0	0	./.	10	12	14	21	83	81	83	81	14	21	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730472472	7	62327288	G	GT	1380	PASS	-	-	-	-	-	Ins	-	I	62327288	62327296	1	136	1213.75	-	-	7	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	16	7	23	13	69	37	69	38	23	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730474272	7	65286306	AT	A	329	PASS	AC008267.2	ENST00000418858	r.?	-	-	Del	intronic	D	65286306	65286308	1	16	322.443	-	-	1	1	1	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	15	24	15	0	0	./.	3	3	3	5	52	52	52	52	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730477887	7	70935197	AAAC	A	540	PASS	WBSCR17	CCDS5540.1	r.?	-	-	Del	intronic	D	70935197	70935212	3	28	476.439	-	-	4	1	1	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	3	6	7	11	42	38	42	38	7	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730478105	7	71274817	C	CT	956	PASS	CALN1	CCDS47603.1	r.?	-	-	Ins	intronic	I	71274817	71274826	1	96	939.031	-	-	8	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	11	7	12	11	49	44	50	44	12	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730484203	7	83879612	G	GA	960	PASS	SEMA3A	ENST00000424555	r.?	-	-	Ins	intronic	I	83879612	83879622	1	81	838.775	-	-	9	1	1	SEMA3A|ENST00000424555|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SEMA3A|ENST00000424555|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	8	8	12	13	41	47	41	47	12	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730484363	7	84423077	TCTACAAAAAAAAAAAAAAAAAAAA	T	783	PASS	-	-	-	-	-	Del	-	D	84423077	84423102	24	168	1448.58	-	-	1	1	-	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	20	7	15	7	39	21	44	21	20	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730485728	7	88112506	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	88112506	88112516	1	12	265.09	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	4	3	38	55	38	57	4	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730486523	7	89995542	TTTG	T	360	PASS	GTPBP10	CCDS5617.1	r.?	-	-	Del	intronic	D	89995542	89995565	3	15	322.443	-	-	7	1	-	GTPBP10|CCDS5617.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTPBP10|CCDS5617.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	8	25	8	0	0	./.	2	4	2	4	57	46	57	50	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730487516	7	92323002	C	CT	1500	PASS	CDK6	CCDS5628.1	r.?	-	-	Ins	intronic	I	92323002	92323007	1	180	1327.26	-	-	4	1	1	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	11	14	16	14	46	36	46	36	16	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730490795	7	99888269	TCACCTGAGGCCAGGACTTTGAGATTAGCCTGGACCA	TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA	370	PASS	-	-	-	-	-	Complex	-	DI	99888270	99888305	36	27	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	8	0	0	35	31	37	39	2	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730491971	7	101710834	TA	T	420	PASS	CUX1	CCDS5721.1	r.?	-	-	Del	intronic	D	101710834	101710836	1	18	376.183	-	-	1	1	1	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	5	5	5	33	45	33	45	5	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730494007	7	105828786	GCT	G	420	PASS	-	-	-	-	-	Del	-	D	105828786	105828806	2	20	376.183	-	-	9	1	-	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	4	3	4	5	43	55	43	55	4	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730498560	7	118090621	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	118090621	118090631	1	88	894.924	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	10	11	0	0	./.	10	7	14	12	47	57	47	58	14	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730498753	7	118525015	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	118525015	118525023	1	10	265.09	-	-	7	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	4	1	5	3	56	41	56	42	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730498997	7	119193853	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	119193853	119193862	2	12	268.702	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	3	3	44	47	44	47	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730499373	7	120561782	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	120561782	120561789	1	12	265.692	-	-	6	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	3	2	8	4	70	31	72	31	8	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730499402	7	120663082	AG	A	600	PASS	C7orf58	CCDS34739.1	r.?	-	-	Del	intronic	D	120663082	120663084	1	32	521.751	-	-	1	1	1	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	3	7	5	14	34	44	34	44	5	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730499493	7	120896185	A	AC	389	PASS	C7orf58	CCDS34739.1	r.?	-	-	Ins	intronic	I	120896185	120896186	1	14	358.723	-	-	0	1	-	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	6	1	13	12	30	27	31	27	13	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730501652	7	126276718	G	GT	360	PASS	GRM8	CCDS5794.1	r.?	-	-	Ins	intronic	I	126276718	126276728	1	16	316.422	-	-	9	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	3	3	44	57	45	57	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730505280	7	133598387	TAG	T	360	PASS	EXOC4	CCDS5829.1	r.?	-	-	Del	intronic	D	133598387	133598405	2	12	322.443	-	-	8	1	1	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	1	5	1	5	31	49	31	49	1	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730505600	7	134425051	TA	T	300	PASS	CALD1	CCDS5834.1	r.?	-	-	Del	upstream	D	134425051	134425061	1	12	268.1	-	-	9	1	1	CALD1|CCDS5834.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CALD1|CCDS5834.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	2	3	43	52	43	52	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730506340	7	135907318	T	TTG	279	PASS	-	-	-	-	-	Ins	-	I	135907318	135907320	2	56	680.564	-	-	0	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	7	6	0	0	34	36	34	36	7	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730507284	7	138062036	T	TA	989	PASS	-	-	-	-	-	Ins	-	I	138062036	138062037	1	90	896.73	-	-	0	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	8	9	9	13	44	33	44	34	9	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730512549	7	149820343	C	CA	303	PASS	-	-	-	-	-	Ins	-	I	149820343	149820353	1	20	368.958	-	-	9	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	4	8	7	33	27	33	27	8	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730512925	7	150679801	AC	A	1560	PASS	KCNH2	CCDS5910.1	r.?	-	-	Del	upstream	D	150679801	150679807	1	192	1391.23	-	-	5	1	1	KCNH2|CCDS5910.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KCNH2|CCDS5910.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	22	27	22	27	0	0	./.	11	15	17	17	38	50	38	50	17	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730518151	8	2282633	AG	A	840	PASS	-	-	-	-	-	Del	-	D	2282633	2282635	1	63	751.613	-	-	1	1	1	-	-	./.	0	0	0	0	26	32	26	32	0	0	./.	8	6	8	13	79	85	79	85	8	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730518411	8	2764340	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	2764340	2764350	1	64	729.337	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	7	9	14	35	50	35	50	9	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730523174	8	13447253	C	CT	1289	PASS	-	-	-	-	-	Ins	-	I	13447253	13447260	1	140	1159.86	-	-	6	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	13	9	20	12	56	50	56	50	20	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730525981	8	19012332	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	19012332	19012333	1	12	263.058	-	-	0	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	2	4	2	36	30	37	30	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730532682	8	33561089	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	33561089	33561099	1	10	263.66	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	15	0	0	./.	1	4	2	4	49	49	51	49	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730533401	8	35375636	GA	G	1080	PASS	UNC5D	CCDS6093.2	r.?	-	-	Del	intronic	D	35375636	35375646	1	96	968.682	-	-	9	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	7	11	11	14	33	39	33	39	11	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730533717	8	36597690	TA	T	1320	PASS	-	-	-	-	-	Del	-	D	36597690	36597698	1	135	1183.94	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	14	8	28	12	57	42	57	42	28	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730538023	8	49113724	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	49113724	49113734	1	12	264.262	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	2	4	51	66	52	68	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730541350	8	57963779	G	GAACATAGCATAGCACATAGCAAAGAATTGAGC	291	PASS	-	-	-	-	-	Ins	-	I	57963779	57963784	32	40	378.241	-	-	0	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	7	4	0	0	43	21	50	25	7	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730544216	8	66042078	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	66042078	66042079	1	6	260.047	-	-	0	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	5	0	7	4	44	31	45	31	7	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730546672	8	71747284	CTTTG	C	1645	PASS	-	-	-	-	-	Del	-	D	71747284	71747292	4	192	1611.46	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	7	23	7	26	20	59	20	59	7	26	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730547739	8	74495892	T	TA	1140	PASS	STAU2	CCDS6214.1	r.?	-	-	Ins	intronic	I	74495892	74495901	1	98	1009.85	-	-	8	1	1	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	6	13	13	23	49	62	49	62	13	23	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730548357	8	75753351	CTTA	C	660	PASS	PI15	CCDS6218.1	r.?	-	-	Del	intronic	D	75753351	75753357	3	42	591.37	-	-	1	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	6	5	6	6	34	34	34	34	7	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730548989	8	77238123	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	77238123	77238143	2	15	322.894	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	5	4	39	48	39	48	5	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730552098	8	85299770	CAG	C	1248	PASS	-	-	-	-	-	Del	-	D	85299770	85299775	2	156	1234.75	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	11	12	15	19	44	37	44	37	15	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730559801	8	104303066	GA	G	997	PASS	-	-	-	-	-	Del	-	D	104303066	104303074	1	18	912.458	-	-	7	1	1	-	-	./.	0	0	0	0	2	8	2	8	0	0	./.	0	17	0	19	1	44	1	44	0	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730561774	8	109071459	C	CA	269	PASS	RSPO2	CCDS6307.1	r.?	-	-	Ins	intronic	I	109071459	109071469	1	10	263.058	-	-	9	1	1	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	24	18	25	0	0	./.	1	4	1	4	39	57	41	57	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730561807	8	109149167	C	CT	1140	PASS	-	-	-	-	-	Ins	-	I	109149167	109149177	1	104	1008.05	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	7	12	9	15	37	47	37	47	9	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730564050	8	114719058	A	AT	1380	PASS	-	-	-	-	-	Ins	-	I	114719058	114719066	1	156	1222.71	-	-	7	1	1	-	-	./.	0	0	0	0	10	6	11	6	0	0	./.	12	11	13	15	50	39	51	39	13	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730567270	8	122576359	A	AT	1169	PASS	-	-	-	-	-	Ins	-	I	122576359	122576367	1	117	1061.86	-	-	7	1	1	-	-	./.	0	0	0	0	18	20	18	21	0	0	./.	8	12	10	14	38	38	39	40	10	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730569058	8	126467359	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	126467359	126467363	2	6	260.047	-	-	1	1	-	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	5	0	6	0	37	47	37	47	7	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730569500	8	127496516	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	127496516	127496526	1	10	266.068	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	4	1	4	2	60	38	60	38	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730570051	8	128804122	A	AT	277	PASS	PVT1	CCDS3617.1	r.?	-	-	Ins	upstream	I	128804122	128804132	1	12	266.068	-	-	9	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	8	11	9	11	0	0	./.	2	3	3	5	43	38	43	38	3	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730573118	8	137362353	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	137362353	137362372	2	12	259.445	-	-	9	1	-	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	4	5	36	38	36	38	4	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730575299	8	142294968	GC	G	840	PASS	-	-	-	-	-	Del	-	D	142294968	142294974	1	64	745.592	-	-	5	1	1	-	-	./.	0	0	0	0	8	21	8	21	0	0	./.	7	7	14	12	39	39	39	39	14	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730581381	9	10724826	T	TA	1140	PASS	-	-	-	-	-	Ins	-	I	10724826	10724834	1	110	1011.63	-	-	7	1	1	-	-	./.	0	0	0	0	19	18	20	18	0	0	./.	10	9	16	13	41	40	41	41	16	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730583810	9	16446293	CA	C	300	PASS	BNC2	CCDS6482.2	r.?	-	-	Del	intronic	D	16446293	16446303	1	10	269.387	-	-	9	1	1	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	12	23	12	0	0	./.	1	4	1	4	35	58	35	58	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730586443	9	22656700	GA	G	1080	PASS	-	-	-	-	-	Del	-	D	22656700	22656710	1	91	969.19	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	6	12	13	15	47	40	47	40	13	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730589341	9	30015408	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	30015408	30015424	2	6	269.387	-	-	7	1	1	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	0	5	0	5	31	41	31	41	0	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730596308	9	68333545	GA	G	475	PASS	-	-	-	-	-	Del	-	D	68333545	68333554	1	120	1076.34	-	-	8	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	11	9	12	9	32	27	32	27	12	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730599215	9	72287471	CGCG	C	269	PASS	APBA1	CCDS6630.1	r.?	-	-	Del	upstream	D	72287471	72287489	3	12	264.57	-	-	5	1	1	APBA1|CCDS6630.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	APBA1|CCDS6630.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	3	53	16	53	16	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730599352	9	72608654	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	72608654	72608663	1	70	796.119	-	-	8	1	1	-	-	./.	0	0	0	0	14	26	14	26	0	0	./.	6	9	11	10	34	50	34	50	11	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730601231	9	76731499	A	AT	1200	PASS	-	-	-	-	-	Ins	-	I	76731499	76731508	1	117	1062.5	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	8	12	16	19	52	52	52	52	16	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730602857	9	80328514	AAC	A	300	PASS	GNAQ	CCDS6658.1	r.?	-	-	Del	downstream	D	80328514	80328533	2	12	269.387	-	-	9	1	-	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	4	32	48	32	48	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730603860	9	83004577	AC	A	869	PASS	-	-	-	-	-	Del	-	D	83004577	83004579	1	70	806.354	-	-	1	1	-	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	6	9	8	15	16	51	16	51	8	15	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730605878	9	87719347	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	87719347	87719357	1	12	265.774	-	-	9	1	1	-	-	./.	0	0	0	0	18	28	19	28	0	0	./.	2	3	2	3	44	50	44	50	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730609052	9	94870043	AG	A	300	PASS	SPTLC1	CCDS6692.1	r.?	-	-	Del	intronic	D	94870043	94870045	1	12	259.754	-	-	1	1	1	SPTLC1|CCDS6692.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPTLC1|CCDS6692.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	2	40	45	40	45	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730612621	9	103153409	C	CA	1430	PASS	AL353805.1	ENST00000429562	r.?	-	-	Ins	intronic	I	103153409	103153418	1	169	1278	-	-	8	1	1	AL353805.1|ENST00000429562|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL353805.1|ENST00000429562|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	12	12	14	21	38	58	38	58	14	21	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730615674	9	110528056	G	GAAATATCATCAAGCCAGTA	406	PASS	-	-	-	-	-	Ins	-	I	110528056	110528075	19	64	589.92	-	-	0	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	7	7	3	3	40	59	44	63	7	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730620700	9	120981387	TG	T	1140	PASS	-	-	-	-	-	Del	-	D	120981387	120981389	1	98	1022.47	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	13	6	15	9	42	33	42	33	15	9	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730620809	9	121214559	A	AT	836	PASS	-	-	-	-	-	Ins	-	I	121214559	121214566	1	56	842.169	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	14	0	0	./.	3	13	14	16	42	45	43	46	14	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730621787	9	123754080	C	CA	840	PASS	C5	CCDS6826.1	r.?	-	-	Ins	intronic	I	123754080	123754088	1	64	745.854	-	-	7	1	1	C5|CCDS6826.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C5|CCDS6826.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	7	7	10	8	36	33	36	33	10	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730622827	9	126206238	G	GA	300	PASS	DENND1A	CCDS35133.1	r.?	-	-	Ins	intronic	I	126206238	126206246	1	12	265.774	-	-	7	1	1	DENND1A|CCDS35133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DENND1A|CCDS35133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	5	1	53	34	53	34	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730624900	9	130413851	CCT	C	300	PASS	STXBP1	CCDS6874.1	r.?	-	-	Del	intronic	D	130413851	130413868	2	10	267.581	-	-	8	1	1	STXBP1|CCDS6874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP1|CCDS6874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	2	4	31	44	31	44	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730628213	9	135882374	GATGGTTGGATGGATGGATGGATGGATGGTGGATGTGTGGATGGATGAATGGATGAACAGATGGGTGGATGGATGGATGGATGGATGC	G	389	PASS	-	-	-	-	-	Del	-	D	135882374	135882466	87	18	363.896	-	-	1	1	-	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	5	2	0	0	41	34	46	36	5	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730630072	9	140638960	C	CG	1380	PASS	EHMT1	ENST00000428019	r.?	-	-	Ins	intronic	I	140638960	140638965	1	154	1216.9	-	-	4	1	1	EHMT1|ENST00000428019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EHMT1|ENST00000428019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	8	8	0	0	./.	13	10	16	14	40	44	40	44	16	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730631506	X	5258021	TA	T	1380	PASS	-	-	-	-	-	Del	-	D	5258021	5258031	1	154	1238.85	-	-	9	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	13	10	15	14	58	46	58	46	15	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730633122	X	9450374	G	GT	749	PASS	TBL1X	CCDS14133.1	r.?	-	-	Ins	intronic	I	9450374	9450383	1	56	692.129	-	-	8	1	1	TBL1X|CCDS14133.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TBL1X|CCDS14133.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	7	6	11	7	65	46	65	48	11	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730633565	X	10611866	TA	T	306	PASS	MID1	CCDS14138.1	r.?	-	-	Del	intronic	D	10611866	10611873	1	45	646.067	-	-	6	1	1	MID1|CCDS14138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MID1|CCDS14138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	8	4	9	4	21	17	22	18	10	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730634651	X	13835420	ATC	A	360	PASS	GPM6B	CCDS35206.1	r.40_41delGA	c.?	p.?	Del	5'UTR variant	D	13835420	13835440	2	15	323.334	-	-	9	1	-	GPM6B|CCDS35206.1|r.40_41delGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	GPM6B|CCDS35206.1|r.40_41delGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	8	17	8	17	0	0	./.	4	2	5	3	59	38	59	38	5	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730636605	X	18770481	T	TTG	720	PASS	PPEF1	CCDS14188.1	r.?	-	-	Ins	intronic	I	18770481	18770501	2	48	631.617	-	-	9	1	-	PPEF1|CCDS14188.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPEF1|CCDS14188.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	7	9	10	40	49	41	49	9	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730636870	X	19431806	GT	G	269	PASS	MAP3K15	CCDS35212.1	r.?	-	-	Del	intronic	D	19431806	19431808	1	6	268.843	-	-	1	1	1	MAP3K15|CCDS35212.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP3K15|CCDS35212.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	5	0	9	1	23	18	23	18	9	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730637741	X	22405137	GT	G	1020	PASS	-	-	-	-	-	Del	-	D	22405137	22405146	1	78	916.114	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	12	5	16	12	49	45	49	45	16	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730638673	X	24395447	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	24395447	24395466	2	10	268.843	-	-	9	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	4	1	47	34	47	34	4	1	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730639848	X	27768908	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	27768908	27768918	1	15	319.12	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	2	4	2	39	41	39	41	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730641039	X	30871637	C	CT	780	PASS	TAB3	CCDS14226.1	r.?	-	-	Ins	intronic	I	30871637	30871644	1	54	692.731	-	-	6	1	1	TAB3|CCDS14226.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TAB3|CCDS14226.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	11	15	0	0	./.	5	8	8	11	31	40	31	40	8	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730641610	X	32199656	G	GT	1020	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	32199656	32199664	1	90	905.879	-	-	7	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	23	15	24	0	0	./.	8	9	11	10	46	32	46	32	11	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730642569	X	34769168	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	34769168	34769178	1	12	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	2	3	56	34	56	34	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730642951	X	36067281	G	GT	720	PASS	CXorf59	CCDS14238.1	r.?	-	-	Ins	intronic	I	36067281	36067290	1	45	626.199	-	-	8	1	1	CXorf59|CCDS14238.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CXorf59|CCDS14238.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	25	0	0	./.	4	8	4	11	32	35	32	35	4	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730643176	X	37335468	T	TA	1620	PASS	ENSG00000250349	ENST00000465127	r.?	-	-	Ins	intronic	I	37335468	37335473	1	210	1438.75	-	-	4	1	1	ENSG00000250349|ENST00000465127|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000250349|ENST00000465127|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	19	21	19	0	0	./.	14	13	15	19	37	61	37	61	15	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730643553	X	38646867	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	38646867	38646877	1	10	261.619	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	1	4	1	6	42	60	42	60	1	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730645029	X	42243580	C	CA	900	PASS	-	-	-	-	-	Ins	-	I	42243580	42243589	1	66	799.305	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	10	8	17	36	42	36	42	8	17	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730646504	X	46131543	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	46131543	46131553	1	7	318.518	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	0	6	16	13	59	52	59	53	16	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730649641	X	54429057	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	54429057	54429067	1	10	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	1	4	2	49	43	52	43	4	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730651217	X	63633163	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	63633163	63633178	2	12	269.445	-	-	7	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	2	3	2	37	45	37	45	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730653303	X	70127270	T	TC	300	PASS	TEX11	CCDS35323.1	r.?	-	-	Ins	intronic	I	70127270	70127271	1	12	266.435	-	-	0	1	1	TEX11|CCDS35323.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TEX11|CCDS35323.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	4	5	36	51	38	51	4	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730656272	X	78236714	GAGTAT	G	1045	PASS	-	-	-	-	-	Del	-	D	78236714	78236721	5	120	1077.78	-	-	1	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	9	11	12	16	52	39	52	39	12	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730656464	X	78737754	TC	T	1140	PASS	-	-	-	-	-	Del	-	D	78737754	78737757	1	110	1019.68	-	-	2	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	10	9	12	16	41	41	41	41	12	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730657628	X	82492669	ATC	A	1560	PASS	-	-	-	-	-	Del	-	D	82492669	82492673	2	195	1397.5	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	14	12	21	14	42	44	42	44	21	14	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730657658	X	82698651	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	82698651	82698660	1	10	265.231	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	14	0	0	./.	1	4	1	4	45	43	45	43	1	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730658598	X	85790713	G	GA	300	PASS	DACH2	CCDS48140.1	r.?	-	-	Ins	intronic	I	85790713	85790723	1	6	265.231	-	-	9	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	0	5	1	5	51	36	51	37	1	6	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730661452	X	93856191	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	93856191	93856208	2	12	268.843	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	2	3	2	57	30	57	30	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730661623	X	94317955	CA	C	1080	PASS	MIR548M	ENST00000408260	r.?	-	-	Del	downstream	D	94317955	94317963	1	99	968.799	-	-	7	1	1	MIR548M|ENST00000408260|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	MIR548M|ENST00000408260|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	./.	0	0	0	0	19	17	19	17	0	0	./.	10	8	15	10	57	36	57	36	15	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730661630	X	94338282	CT	C	300	PASS	-	-	-	-	-	Del	-	D	94338282	94338284	1	6	266.435	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	0	5	0	7	37	52	37	52	0	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730661932	X	95389631	TA	T	360	PASS	-	-	-	-	-	Del	-	D	95389631	95389641	1	16	323.334	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	3	3	44	43	44	43	3	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730662146	X	95962692	G	GA	300	PASS	DIAPH2	CCDS14467.1	r.?	-	-	Ins	intronic	I	95962692	95962702	1	6	260.414	-	-	9	1	1	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	0	5	0	4	33	51	34	51	0	5	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730662961	X	98226771	CT	C	840	PASS	-	-	-	-	-	Del	-	D	98226771	98226775	1	60	747.824	-	-	3	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	9	8	13	24	51	24	51	8	13	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730663019	X	98464329	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	98464329	98464338	1	12	264.629	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	2	4	49	57	49	57	2	4	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730664324	X	102031110	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	102031110	102031120	1	12	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	2	3	35	50	36	50	2	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730666252	X	108428892	CT	C	300	PASS	-	-	-	-	-	Del	-	D	108428892	108428899	1	6	269.445	-	-	6	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	0	5	1	8	51	45	51	45	1	8	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730666947	X	110642441	CAT	C	300	PASS	DCX	CCDS14556.1	r.?	-	-	Del	intronic	D	110642441	110642457	2	12	269.445	-	-	7	1	1	DCX|CCDS14556.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCX|CCDS14556.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	3	2	45	44	45	44	3	2	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730667587	X	112628169	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	112628169	112628179	1	6	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	18	21	0	0	./.	5	0	5	0	44	37	44	38	5	0	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730669559	X	117993586	AAACAAATAAACAAACAAAAGA	AATAAACAAACAAAAGAC	319	PASS	-	-	-	-	-	Complex	-	DI	117993587	117993607	21	36	0	-	-	0	1	-	-	-	./.	0	0	0	0	15	14	15	15	0	0	./.	8	3	0	0	47	31	47	31	8	3	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730669560	X	117993608	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	117993608	117993618	1	15	316.11	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	19	12	0	0	./.	4	2	15	10	45	44	45	45	15	10	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730671809	X	123087024	CATTAAAAAAAAA	C	520	PASS	-	-	-	-	-	Del	-	D	123087024	123087053	12	121	1076.58	-	-	2	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	10	10	11	12	48	49	48	49	11	12	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730672003	X	123377992	G	GA	1469	PASS	-	-	-	-	-	Ins	-	I	123377992	123378001	1	182	1326.76	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	12	13	16	19	49	53	49	53	16	19	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730672040	X	123460480	A	AT	1740	PASS	-	-	-	-	-	Ins	-	I	123460480	123460487	1	228	1539.3	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	11	18	14	25	49	73	49	73	14	25	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730673118	X	126476630	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	126476630	126476649	2	10	264.629	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	4	2	6	39	57	39	57	2	7	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730674833	X	131783247	CA	C	1440	PASS	HS6ST2	CCDS48169.1	r.?	-	-	Del	intronic	D	131783247	131783251	1	160	1289.12	-	-	3	1	1	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	9	15	14	18	38	46	38	46	14	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730675248	X	132853219	CACA	C	1540	PASS	GPC3	CCDS14638.1	r.?	-	-	Del	intronic	D	132853219	132853224	3	238	1562.18	-	-	1	1	1	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	16	13	19	16	41	46	41	46	19	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730676514	X	136265839	C	CT	1409	PASS	-	-	-	-	-	Ins	-	I	136265839	136265846	1	168	1272.87	-	-	6	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	11	13	16	16	48	52	49	53	16	16	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730678216	X	141101181	CA	C	1198	PASS	-	-	-	-	-	Del	-	D	141101181	141101185	1	120	1130.47	-	-	3	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	14	7	18	11	42	42	42	42	18	11	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730678720	X	142607403	T	TA	1200	PASS	SPANXN3	CCDS35418.1	r.?	-	-	Ins	upstream	I	142607403	142607410	1	117	1064.54	-	-	6	1	-	SPANXN3|CCDS35418.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SPANXN3|CCDS35418.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	16	14	16	0	0	./.	8	12	13	18	40	48	41	52	13	18	1	1	1	1	1	1	1	1
2662806	PD11353a	PD11353b	2730680864	X	148495320	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	148495320	148495330	1	12	265.833	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	3	3	43	44	44	44	3	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673644878	1	10837075	GGGGAA	GTTC	778	PASS	CASZ1	CCDS41246.1	r.?	-	-	Complex	intronic	DI	10837076	10837080	5	63	0	-	-	0	1	1	CASZ1|CCDS41246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	CASZ1|CCDS41246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	8	6	0	0	38	20	38	20	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673646189	1	15496854	C	CCT	269	PASS	TMEM51	CCDS154.1	r.?	-	-	Ins	intronic	I	15496854	15496855	2	6	259.245	-	-	0	1	1	TMEM51|CCDS154.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMEM51|CCDS154.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	5	0	1	0	36	11	37	12	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673647676	1	19885330	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	19885330	19885337	1	60	795.796	-	-	6	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	11	4	13	6	43	19	44	19	13	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673650905	1	30765307	CGATGA	C	834	PASS	-	-	-	-	-	Del	-	D	30765307	30765316	5	78	910.331	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	12	7	15	8	25	8	25	7	15	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673652060	1	34967814	T	TC	329	PASS	-	-	-	-	-	Ins	-	I	34967814	34967821	1	15	306.879	-	-	6	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	4	2	7	3	24	12	24	12	7	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673655027	1	46024382	TTTCA	TAG	807	PASS	AKR1A1	CCDS523.1	r.?	-	-	Complex	intronic	DI	46024383	46024386	4	70	0	-	-	0	1	1	AKR1A1|CCDS523.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	AKR1A1|CCDS523.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	3	8	3	0	0	./.	9	6	0	0	25	23	25	23	9	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673661147	1	70244704	T	TATATATATATATACACACACACTCATATATATACACATATATACACACACACAAAC	300	PASS	LRRC7	CCDS645.1	r.?	-	-	Ins	intronic	I	70244704	70244716	56	10	99.6989	-	-	0	1	-	LRRC7|CCDS645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC7|CCDS645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	1	4	0	0	14	21	14	21	1	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673662865	1	77493820	CA	C	720	PASS	ST6GALNAC5	CCDS673.1	r.?	-	-	Del	intronic	D	77493820	77493824	1	48	643.862	-	-	3	1	1	ST6GALNAC5|CCDS673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST6GALNAC5|CCDS673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	7	5	11	8	16	17	16	17	11	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673666232	1	90482570	CT	C	306	PASS	ZNF326	CCDS727.1	r.?	-	-	Del	intronic	D	90482570	90482573	1	12	321.931	-	-	2	1	1	ZNF326|CCDS727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF326|CCDS727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	5	2	7	16	18	16	18	2	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673668650	1	99820122	G	GA	251	PASS	-	-	-	-	-	Ins	-	I	99820122	99820132	1	10	265.265	-	-	9	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	1	4	3	4	18	21	18	21	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673670780	1	107488120	TCATGATCA	T	493	PASS	-	-	-	-	-	Del	-	D	107488120	107488131	8	88	912.137	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	7	10	7	9	12	19	12	20	7	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673682520	1	166303661	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	166303661	166303662	1	6	264.663	-	-	0	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	0	5	2	5	20	24	20	24	2	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673683096	1	168606129	CT	C	480	PASS	-	-	-	-	-	Del	-	D	168606129	168606132	1	25	429.241	-	-	2	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	4	4	6	9	12	19	12	19	6	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673690489	1	197268186	GA	G	660	PASS	CRB1	CCDS1390.1	r.?	-	-	Del	intronic	D	197268186	197268195	1	40	590.207	-	-	8	1	1	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	7	7	7	19	20	19	20	7	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673693315	1	207084420	CCTA	C	776	PASS	FAIM3	CCDS1473.1	r.?	-	-	Del	intronic	D	207084420	207084427	3	70	804.827	-	-	2	1	1	FAIM3|CCDS1473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAIM3|CCDS1473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	9	6	9	10	10	11	10	11	9	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673696993	1	221268087	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	221268087	221268095	1	24	424.425	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	5	4	6	26	18	26	18	4	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673715133	10	28482672	C	CA	689	PASS	MPP7	CCDS7158.1	r.?	-	-	Ins	intronic	I	28482672	28482679	1	45	637.677	-	-	6	1	1	MPP7|CCDS7158.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MPP7|CCDS7158.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	8	6	12	16	33	16	34	6	12	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673717876	10	36637849	GT	G	360	PASS	-	-	-	-	-	Del	-	D	36637849	36637858	1	15	323.053	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	12	0	0	./.	2	4	5	6	20	18	20	24	5	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673722197	10	52141038	AAAG	A	300	PASS	SGMS1	CCDS7240.1	r.?	-	-	Del	intronic	D	52141038	52141053	3	12	269.211	-	-	4	1	-	SGMS1|CCDS7240.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SGMS1|CCDS7240.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	4	2	16	18	16	18	4	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673724766	10	60112139	C	CT	720	PASS	UBE2D1	CCDS7252.1	r.?	-	-	Ins	intronic	I	60112139	60112143	1	49	638.279	-	-	3	1	1	UBE2D1|CCDS7252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2D1|CCDS7252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	6	6	6	7	16	16	16	17	6	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673726686	10	66513454	CT	C	300	PASS	-	-	-	-	-	Del	-	D	66513454	66513462	1	10	269.211	-	-	7	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	1	4	1	9	10	26	10	26	1	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673727360	10	68363480	G	GA	569	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Ins	intronic	I	68363480	68363487	1	32	532.401	-	-	6	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	3	7	5	7	18	15	18	15	5	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673727780	10	69780950	G	GGTT	300	PASS	HERC4	CCDS41533.1	r.?	-	-	Ins	intronic	I	69780950	69780956	3	6	260.18	-	-	1	1	1	HERC4|CCDS41533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HERC4|CCDS41533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	0	5	4	5	20	22	20	22	4	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673728722	10	71989674	CT	C	300	PASS	PPA1	CCDS7299.1	r.?	-	-	Del	intronic	D	71989674	71989684	1	12	268.609	-	-	9	1	1	PPA1|CCDS7299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPA1|CCDS7299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	3	2	25	19	25	19	3	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673734355	10	93759050	TGAAAA	T	269	PASS	BTAF1	CCDS7419.1	r.?	-	-	Del	intronic	D	93759050	93759056	5	6	269.211	-	-	1	1	1	BTAF1|CCDS7419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTAF1|CCDS7419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	0	5	4	5	14	17	14	17	4	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673743700	10	124828328	TCTT	TG	844	PASS	-	-	-	-	-	Complex	-	DI	124828329	124828331	3	80	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	7	9	0	0	19	37	19	37	7	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673744414	10	127379030	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	127379030	127379033	1	14	372.681	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	6	1	6	4	12	4	12	1	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673748360	11	4748743	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	4748743	4748753	1	15	318.191	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	4	2	4	3	26	22	26	22	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673751471	11	14373458	AG	A	269	PASS	RRAS2	CCDS7814.1	r.?	-	-	Del	intronic	D	14373458	14373460	1	6	266.062	-	-	1	1	1	RRAS2|CCDS7814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RRAS2|CCDS7814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	5	0	10	0	22	22	23	22	11	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673753167	11	20953187	G	GT	840	PASS	NELL1	CCDS7855.1	r.?	-	-	Ins	intronic	I	20953187	20953194	1	64	746.66	-	-	6	1	1	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	7	7	8	10	13	16	13	16	8	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673755811	11	29074443	TC	T	1258	PASS	-	-	-	-	-	Del	-	D	29074443	29074445	1	140	1186.57	-	-	1	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	13	9	16	9	20	12	20	12	16	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673769660	11	83819470	GA	G	660	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	83819470	83819474	1	40	593.284	-	-	3	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	4	7	6	12	9	18	9	18	6	12	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673770543	11	87350144	AG	A	569	PASS	-	-	-	-	-	Del	-	D	87350144	87350148	1	20	539.349	-	-	3	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	9	5	15	8	24	8	24	5	15	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673771218	11	90188133	CA	C	360	PASS	-	-	-	-	-	Del	-	D	90188133	90188141	1	16	319.997	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	4	4	20	17	20	17	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673776698	11	109921615	CTG	C	480	PASS	-	-	-	-	-	Del	-	D	109921615	109921619	2	25	429.673	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	4	4	4	25	18	25	18	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673786994	12	10106124	C	CTG	272	PASS	-	-	-	-	-	Ins	-	I	10106124	10106125	2	11	525.04	-	-	0	1	1	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	10	0	14	4	65	47	67	47	14	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673789075	12	15324004	CTCTG	C	540	PASS	RERG	CCDS8673.1	r.?	-	-	Del	intronic	D	15324004	15324013	4	18	484.457	-	-	2	1	1	RERG|CCDS8673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RERG|CCDS8673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	1	8	1	11	13	30	13	30	1	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673791491	12	22348487	ACAT	A	327	PASS	ST8SIA1	CCDS8697.1	r.7549_7551delAUG	c.?	p.?	Del	3'UTR variant	D	22348487	22348493	3	18	376.198	-	-	1	1	1	ST8SIA1|CCDS8697.1|r.7549_7551delAUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ST8SIA1|CCDS8697.1|r.7549_7551delAUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	7	16	7	16	0	0	./.	2	5	4	5	18	22	18	22	4	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673794379	12	30696430	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	30696430	30696438	1	12	319.359	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	1	6	2	31	17	31	18	6	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673800775	12	51520065	TA	T	507	PASS	TFCP2	CCDS8808.1	r.?	-	-	Del	intronic	D	51520065	51520070	1	20	514.806	-	-	4	1	1	TFCP2|CCDS8808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TFCP2|CCDS8808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	1	9	3	14	12	31	12	32	3	15	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673806501	12	69128595	CAAAGA	C	269	PASS	NUP107	CCDS8985.1	r.2486_2490delAAAGA	c.2371_2375delAAAGA	p.K793fs*2	Del	frameshift	D	69128595	69128608	5	10	269.143	-	-	2	1	1	NUP107|CCDS8985.1|r.2486_2490delAAAGA|c.2371_2375delAAAGA|p.K793fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	NUP107|CCDS8985.1|r.2486_2490delAAAGA|c.2371_2375delAAAGA|p.K793fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	10	7	10	0	0	./.	1	4	1	5	4	27	4	27	1	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673811013	12	84205280	AC	A	869	PASS	-	-	-	-	-	Del	-	D	84205280	84205284	1	66	805.623	-	-	3	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	10	5	12	11	19	22	19	22	12	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673816635	12	101806387	TTTC	T	399	PASS	ARL1	CCDS44958.1	r.?	-	-	Del	upstream	D	101806387	101806394	3	12	592.115	-	-	2	1	1	ARL1|CCDS44958.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ARL1|CCDS44958.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	6	8	6	0	0	./.	0	11	0	17	12	44	12	44	0	17	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673824084	12	122644201	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	122644201	122644218	2	10	269.143	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	2	4	24	25	24	25	2	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673828150	12	132922137	CCCAGGTCTCAGTCGGTCCCAGACAAGGGCCGCAGCTCACCGCCCTCT	C	261	PASS	ENSG00000236291	ENST00000446891	r.?	-	-	Del	intronic	D	132922137	132922186	47	28	476.63	-	-	1	1	1	ENSG00000236291|ENST00000446891|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000236291|ENST00000446891|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	4	6	4	0	0	./.	6	3	0	0	17	16	26	16	6	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673830344	13	23961443	C	CA	660	PASS	SACS	CCDS9300.2	r.?	-	-	Ins	intronic	I	23961443	23961452	1	36	589.189	-	-	8	1	1	SACS|CCDS9300.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SACS|CCDS9300.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	8	3	12	10	18	16	18	16	12	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673836511	13	47623257	TA	T	600	PASS	-	-	-	-	-	Del	-	D	47623257	47623262	1	35	539.841	-	-	4	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	6	6	9	13	15	13	15	6	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673842616	13	71713781	TAAAA	T	629	PASS	-	-	-	-	-	Del	-	D	71713781	71713789	4	36	595.21	-	-	7	1	1	-	-	./.	0	0	0	0	19	6	19	6	0	0	./.	3	8	5	8	7	12	7	12	5	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673847349	13	90223552	CA	C	660	PASS	-	-	-	-	-	Del	-	D	90223552	90223560	1	42	594.608	-	-	7	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	6	5	8	6	12	9	12	9	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673852529	13	110343737	T	TTAG	538	PASS	-	-	-	-	-	Ins	-	I	110343737	110343739	3	32	523.585	-	-	0	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	7	3	7	10	13	18	13	18	7	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673864712	14	57362071	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	57362071	57362076	1	30	480.9	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	4	8	5	11	12	11	12	8	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673870692	14	78301994	AAAGC	A	776	PASS	ADCK1	CCDS9869.1	r.?	-	-	Del	intronic	D	78301994	78301999	4	66	802.503	-	-	1	1	1	ADCK1|CCDS9869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCK1|CCDS9869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	10	5	11	9	19	11	19	11	11	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673896894	15	77246857	C	CA	269	PASS	RCN2	CCDS10291.1	r.?	-	-	Ins	downstream	I	77246857	77246866	1	12	241.147	-	-	8	1	1	RCN2|CCDS10291.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	RCN2|CCDS10291.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	3	9	12	9	13	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673904275	15	102292782	TCTCAGAGCTGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGACACTCGTGGAGGCGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTCTCA	T	270	PASS	ENSG00000227174	ENST00000455316	r.116_165-40del95	c.116_165-40del95	p.?	Del	ess splice	D	102292782	102292878	95	16	324.778	-	-	1	1	1	ENSG00000227174|ENST00000455316|r.116_165-40del95|c.116_165-40del95|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	ENSG00000227174|ENST00000455316|r.116_165-40del95|c.116_165-40del95|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	0	0	39	23	39	23	3	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673905714	16	3810964	G	GT	360	PASS	CREBBP	CCDS10509.1	r.?	-	-	Ins	intronic	I	3810964	3810973	1	15	320.737	-	-	8	1	1	CREBBP|CCDS10509.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CREBBP|CCDS10509.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	4	4	8	23	41	24	41	4	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673916807	16	31928472	G	GT	360	PASS	ZNF267	CCDS32440.1	r.3111_3112insu	c.?	p.?	Ins	3'UTR variant	I	31928472	31928482	1	16	320.737	-	-	9	1	1	ZNF267|CCDS32440.1|r.3111_3112insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ZNF267|CCDS32440.1|r.3111_3112insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	10	6	10	6	0	0	./.	3	3	3	3	38	44	39	44	3	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673920000	16	47135472	TA	T	254	PASS	NETO2	CCDS10727.1	r.?	-	-	Del	intronic	D	47135472	47135476	1	24	432.466	-	-	3	1	1	NETO2|CCDS10727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NETO2|CCDS10727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	37	26	37	26	0	0	./.	3	5	4	3	63	85	64	87	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673937075	17	18108210	C	CA	300	PASS	ALKBH5	CCDS42272.1	r.?	-	-	Ins	intronic	I	18108210	18108220	1	12	263.933	-	-	9	1	1	ALKBH5|CCDS42272.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALKBH5|CCDS42272.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	2	3	16	27	16	27	2	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673939868	17	27510138	GT	G	720	PASS	-	-	-	-	-	Del	-	D	27510138	27510143	1	24	647.286	-	-	4	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	11	10	14	50	43	50	43	10	14	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673940295	17	28562352	C	CA	600	PASS	SLC6A4	CCDS11256.1	r.?	-	-	Ins	intronic	I	28562352	28562356	1	35	533.886	-	-	3	1	1	SLC6A4|CCDS11256.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SLC6A4|CCDS11256.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	4	6	4	7	24	34	24	35	4	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673951504	17	57921550	TCTC	T	503	PASS	TMEM49	CCDS11619.1	r.?	-	-	Del	downstream	D	57921550	57921556	3	45	646.081	-	-	1	1	1	TMEM49|CCDS11619.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TMEM49|CCDS11619.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	12	6	12	0	0	./.	4	8	9	11	22	26	22	26	9	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673957703	17	73439747	TG	T	269	PASS	-	-	-	-	-	Del	-	D	73439747	73439749	1	6	260.32	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	0	18	1	47	29	47	29	18	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673957889	17	73828463	TG	T	720	PASS	UNC13D	CCDS11730.1	r.?	-	-	Del	intronic	D	73828463	73828465	1	49	647.888	-	-	1	1	1	UNC13D|CCDS11730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC13D|CCDS11730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	6	6	9	11	15	22	15	22	9	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673957995	17	74149193	CT	C	360	PASS	RNF157	CCDS32740.1	r.?	-	-	Del	intronic	D	74149193	74149201	1	15	323.944	-	-	7	1	1	RNF157|CCDS32740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF157|CCDS32740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	4	0	1	27	24	27	24	2	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673960045	17	79017848	CTT	C	567	PASS	BAIAP2	CCDS45806.1	r.?	-	-	Del	intronic	D	79017848	79017851	2	42	593.295	-	-	2	1	1	BAIAP2|CCDS45806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAIAP2|CCDS45806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	6	6	7	27	32	27	32	6	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673963965	18	6826487	T	TA	265	PASS	ARHGAP28	ENST00000419673	r.?	-	-	Ins	intronic	I	6826487	6826490	1	8	372.55	-	-	2	1	1	ARHGAP28|ENST00000419673|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP28|ENST00000419673|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	0	7	0	7	25	44	25	44	0	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673968738	18	20503133	T	TAA	358	PASS	-	-	-	-	-	Ins	-	I	20503133	20503134	2	20	368.335	-	-	0	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	4	8	6	22	30	22	31	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673970754	18	26202552	TA	T	300	PASS	-	-	-	-	-	Del	-	D	26202552	26202554	1	6	263.355	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	0	1	0	58	41	58	41	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673972332	18	31064778	CAA	C	300	PASS	-	-	-	-	-	Del	-	D	31064778	31064781	2	12	269.977	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	5	3	21	21	21	21	5	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673972377	18	31171617	TC	T	360	PASS	ASXL3	CCDS45847.1	r.?	-	-	Del	intronic	D	31171617	31171619	1	7	320.962	-	-	1	1	1	ASXL3|CCDS45847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL3|CCDS45847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	6	0	12	0	53	45	53	45	12	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673974859	18	39049158	CT	C	420	PASS	-	-	-	-	-	Del	-	D	39049158	39049160	1	20	377.968	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	3	7	9	21	36	21	36	7	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673981873	18	58244730	TA	T	720	PASS	-	-	-	-	-	Del	-	D	58244730	58244739	1	40	647.945	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	9	6	10	18	33	18	33	6	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673982201	18	59327345	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	59327345	59327346	1	18	372.55	-	-	0	1	-	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	2	5	3	38	38	38	38	5	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673983363	18	62400793	ACC	A	269	PASS	-	-	-	-	-	Del	-	D	62400793	62400801	2	10	269.977	-	-	7	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	4	1	37	50	37	50	4	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673983999	18	64041214	TG	T	540	PASS	-	-	-	-	-	Del	-	D	64041214	64041216	1	28	485.357	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	6	5	7	18	20	18	20	5	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673986850	18	70832636	AAGTG	A	449	PASS	-	-	-	-	-	Del	-	D	70832636	70832642	4	24	431.964	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	3	5	4	26	19	26	19	5	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673987009	18	71203616	GAGA	G	598	PASS	-	-	-	-	-	Del	-	D	71203616	71203621	3	36	593.95	-	-	1	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	8	3	10	3	41	17	41	17	10	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673987946	18	73924689	GTC	G	269	PASS	-	-	-	-	-	Del	-	D	73924689	73924706	2	10	269.977	-	-	8	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	1	4	1	4	24	41	24	41	1	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673988691	18	75391841	CAT	C	629	PASS	-	-	-	-	-	Del	-	D	75391841	75391844	2	42	593.348	-	-	1	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	6	8	11	43	43	43	43	8	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673990791	19	2702979	GC	G	420	PASS	GNG7	CCDS12091.1	r.?	-	-	Del	upstream	D	2702979	2702981	1	8	378.216	-	-	1	1	1	GNG7|CCDS12091.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AC005258.1|ENST00000507172|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	7	0	7	2	32	18	32	18	7	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673990851	19	2869359	CT	C	252	PASS	ZNF556	CCDS12097.1	r.?	-	-	Del	intronic	D	2869359	2869367	1	6	270.155	-	-	7	1	1	ZNF556|CCDS12097.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF556|CCDS12097.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	0	1	0	39	12	39	13	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2673992257	19	5467876	TA	T	1313	PASS	-	-	-	-	-	Del	-	D	5467876	5467878	1	140	1184.47	-	-	1	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	13	9	17	21	40	38	40	38	17	21	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674002592	19	29337705	GGT	G	269	PASS	-	-	-	-	-	Del	-	D	29337705	29337722	2	6	270.155	-	-	8	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	0	5	0	5	17	69	17	69	0	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674007891	19	42757673	AAGCG	A	329	PASS	ERF	CCDS12600.1	r.?	-	-	Del	intronic	D	42757673	42757680	4	7	324.186	-	-	1	1	1	ERF|CCDS12600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERF|CCDS12600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	0	6	0	8	10	29	10	30	0	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674008381	19	44312273	C	CT	720	PASS	LYPD5	CCDS12631.1	r.?	-	-	Ins	intronic	I	44312273	44312282	1	48	636.932	-	-	8	1	1	LYPD5|CCDS12631.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LYPD5|CCDS12631.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	7	5	10	8	38	42	38	42	10	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674009651	19	46839805	CGT	C	269	PASS	HIF3A	CCDS42580.1	r.?	-	-	Del	intronic	D	46839805	46839822	2	12	259.318	-	-	8	1	-	HIF3A|CCDS42580.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HIF3A|CCDS42580.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	2	2	37	24	38	24	3	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674014537	19	56630374	C	CA	600	PASS	ZNF787	ENST00000270459	r.?	-	-	Ins	intronic	I	56630374	56630377	1	32	534.289	-	-	2	1	1	ZNF787|ENST00000270459|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF787|ENST00000270459|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	7	3	10	4	36	15	38	15	10	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674018724	2	11489829	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	11489829	11489831	1	60	743.121	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	13	0	0	./.	5	9	10	12	13	16	13	16	10	12	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674023029	2	27955603	TG	T	655	PASS	-	-	-	-	-	Del	-	D	27955603	27955605	1	42	590.503	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	6	9	6	18	16	18	16	9	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674025655	2	37004068	T	TAAAA	345	PASS	VIT	CCDS33180.1	r.?	-	-	Ins	intronic	I	37004068	37004074	4	12	562.809	-	-	5	1	1	VIT|CCDS33180.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VIT|CCDS33180.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	0	11	1	0	38	27	38	38	1	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674036600	2	78630778	CTCTT	C	569	PASS	-	-	-	-	-	Del	-	D	78630778	78630788	4	35	536.821	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	4	8	4	20	17	20	17	8	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674036945	2	79819051	TTG	T	300	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	79819051	79819054	2	6	266.002	-	-	1	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	0	11	0	29	16	29	16	11	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674040173	2	95360564	TG	T	530	PASS	-	-	-	-	-	Del	-	D	95360564	95360569	1	30	483.139	-	-	4	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	5	4	7	9	16	18	16	18	7	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674044966	2	114840884	TG	T	300	PASS	-	-	-	-	-	Del	-	D	114840884	114840886	1	6	267.207	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	0	6	0	15	10	15	10	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674045430	2	116623112	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	116623112	116623118	1	15	318.48	-	-	5	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	4	2	5	10	23	12	23	2	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674055597	2	154131184	CCTT	C	449	PASS	-	-	-	-	-	Del	-	D	154131184	154131190	3	21	429.457	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	2	6	2	6	15	15	15	15	2	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674056083	2	156323098	CT	C	509	PASS	-	-	-	-	-	Del	-	D	156323098	156323107	1	18	483.139	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	8	3	13	5	25	5	25	3	13	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674056479	2	157937260	CA	C	300	PASS	-	-	-	-	-	Del	-	D	157937260	157937265	1	12	268.411	-	-	4	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	3	2	4	4	13	19	13	19	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674058901	2	168637462	CT	C	300	PASS	-	-	-	-	-	Del	-	D	168637462	168637466	1	12	268.411	-	-	3	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	5	4	23	20	23	20	5	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674065868	2	193622234	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	193622234	193622244	1	12	265.4	-	-	9	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	3	2	4	3	14	15	15	15	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674068573	2	203802059	ATTGAGATTATTATT	A	377	PASS	ALS2CR8	CCDS42801.1	r.?	-	-	Del	intronic	D	203802059	203802076	14	50	696.664	-	-	1	1	1	ALS2CR8|CCDS42801.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ALS2CR8|CCDS42801.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	9	5	12	18	25	18	25	5	12	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674069252	2	206407965	G	GA	300	PASS	PARD3B	CCDS42806.1	r.?	-	-	Ins	intronic	I	206407965	206407975	1	10	265.4	-	-	9	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	1	4	19	20	19	20	1	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674070176	2	209607324	TATAAC	T	300	PASS	-	-	-	-	-	Del	-	D	209607324	209607333	5	10	268.411	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	6	1	11	9	11	9	6	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674078633	2	240067154	CA	C	720	PASS	HDAC4	CCDS2529.1	r.?	-	-	Del	intronic	D	240067154	240067157	1	48	644.186	-	-	2	1	1	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	2	9	2	0	0	./.	5	7	5	11	21	29	21	29	5	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674080570	20	3168944	GAGCCA	G	385	PASS	DDRGK1	CCDS13050.1	r.?	-	-	Del	downstream	D	3168944	3168952	5	28	486.962	-	-	1	1	1	DDRGK1|CCDS13050.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DDRGK1|CCDS13050.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	13	8	13	0	0	./.	3	6	7	9	44	28	44	28	7	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674087560	20	23775330	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	23775330	23775338	1	15	321.029	-	-	7	1	1	-	-	./.	0	0	0	0	20	6	20	6	0	0	./.	2	4	8	4	26	16	26	16	8	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674090588	20	31306214	AG	A	267	PASS	COMMD7	CCDS46587.1	r.?	-	-	Del	intronic	D	31306214	31306221	1	15	318.621	-	-	6	1	1	COMMD7|CCDS46587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COMMD7|CCDS46587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	4	2	8	3	44	46	44	46	8	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674093340	20	37949924	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	37949924	37949933	1	12	321.029	-	-	8	1	1	-	-	./.	0	0	0	0	4	17	4	17	0	0	./.	1	5	2	5	19	22	19	22	2	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674099984	20	54935516	TG	T	540	PASS	C20orf108	CCDS13450.1	r.?	-	-	Del	intronic	D	54935516	54935518	1	30	486.962	-	-	1	1	1	C20orf108|CCDS13450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf108|ENST00000437418|r.363delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	9	12	9	0	0	./.	5	4	6	6	40	38	40	38	6	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674110711	21	26945010	G	GA	480	PASS	AP001441.1	ENST00000509807	r.?	-	-	Ins	intronic	I	26945010	26945018	1	25	429.834	-	-	7	1	1	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	4	7	5	29	13	29	13	7	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674119292	22	19228635	TC	T	1260	PASS	ENSG00000249108	ENST00000505027	r.?	-	-	Del	intronic	D	19228635	19228639	1	130	1141.22	-	-	3	1	1	ENSG00000249108|ENST00000505027|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000249108|ENST00000505027|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	9	12	15	13	28	27	28	27	15	13	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674124921	22	34016153	TAAAA	T	269	PASS	LARGE	CCDS13912.1	r.?	-	-	Del	intronic	D	34016153	34016161	4	6	271.863	-	-	7	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	0	5	1	6	10	13	10	13	1	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674128419	22	42905856	G	GGTGTGTGTGTGT	290	PASS	RRP7B	CCDS14036.1	r.?	-	-	Ins	downstream	I	42905856	42905875	12	20	464.857	-	-	9	1	1	RRP7B|CCDS14036.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	RRP7B|CCDS14036.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	6	6	7	6	0	0	./.	9	1	8	0	29	28	32	28	11	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674130721	22	48878680	ACCT	A	420	PASS	-	-	-	-	-	Del	-	D	48878680	48878686	3	18	380.609	-	-	1	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	5	2	5	18	32	18	32	2	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674138763	3	21403837	GA	G	540	PASS	-	-	-	-	-	Del	-	D	21403837	21403842	1	24	483.177	-	-	4	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	7	2	8	3	30	27	30	27	8	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674139668	3	24310933	C	CAT	389	PASS	THRB	CCDS2641.1	r.?	-	-	Ins	intronic	I	24310933	24310934	2	18	361.355	-	-	0	1	-	THRB|CCDS2641.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	THRB|CCDS2641.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	5	6	8	22	57	22	58	6	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674143477	3	37316548	CA	C	300	PASS	GOLGA4	CCDS2666.1	r.?	-	-	Del	intronic	D	37316548	37316558	1	10	268.432	-	-	9	1	1	GOLGA4|CCDS2666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GOLGA4|CCDS2666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	1	4	1	4	36	49	36	49	1	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674147428	3	49437024	TC	T	300	PASS	RHOA	CCDS2795.1	r.?	-	-	Del	intronic	D	49437024	49437030	1	12	267.228	-	-	5	1	1	RHOA|CCDS2795.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RHOA|CCDS2795.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	3	2	6	6	24	52	24	52	6	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674149357	3	55420238	CA	C	474	PASS	-	-	-	-	-	Del	-	D	55420238	55420243	1	16	429.491	-	-	4	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	7	1	10	2	35	16	35	16	10	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674150768	3	59260143	CAT	C	360	PASS	-	-	-	-	-	Del	-	D	59260143	59260147	2	7	322.118	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	0	6	0	15	8	15	8	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674161165	3	89965721	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	89965721	89965739	2	10	268.432	-	-	8	1	-	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	4	1	4	1	44	12	44	12	5	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674161862	3	95463578	G	GGCA	269	PASS	-	-	-	-	-	Ins	-	I	95463578	95463581	3	10	465.717	-	-	0	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	0	9	0	10	10	34	10	34	0	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674165260	3	106034611	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	106034611	106034620	1	28	477.759	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	15	19	0	0	./.	6	3	9	7	33	30	33	30	9	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674168303	3	114993522	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	114993522	114993532	1	88	897.014	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	7	10	10	17	30	33	30	33	10	17	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674169086	3	117485144	C	CA	569	PASS	-	-	-	-	-	Ins	-	I	117485144	117485151	1	20	530.241	-	-	6	1	-	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	9	1	13	1	41	9	41	9	13	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674177872	3	145691777	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	145691777	145691784	1	18	477.759	-	-	6	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	1	8	3	11	17	31	17	31	3	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674177902	3	145795384	T	TA	300	PASS	PLOD2	CCDS3132.1	r.?	-	-	Ins	intronic	I	145795384	145795392	1	12	261.207	-	-	7	1	1	PLOD2|CCDS3132.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLOD2|CCDS3132.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	3	5	26	18	26	18	3	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674178025	3	146163328	A	AT	360	PASS	PLSCR2	CCDS3134.1	r.?	-	-	Ins	intronic	I	146163328	146163338	1	16	317.302	-	-	9	1	1	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	5	5	18	24	18	24	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674189327	3	182227803	A	AAC	360	PASS	-	-	-	-	-	Ins	-	I	182227803	182227812	2	16	314.893	-	-	4	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	3	4	3	25	18	25	18	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674190375	3	185025334	CT	C	420	PASS	MAP3K13	CCDS3270.1	r.?	-	-	Del	intronic	D	185025334	185025336	1	20	371.59	-	-	1	1	1	MAP3K13|CCDS3270.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP3K13|CCDS3270.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	3	4	4	2	20	39	20	39	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674201351	4	18114990	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	18114990	18114999	1	20	369.105	-	-	8	1	1	-	-	./.	0	0	0	0	10	18	10	19	0	0	./.	4	3	4	4	14	27	14	27	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674201473	4	18555963	CCAAG	C	538	PASS	-	-	-	-	-	Del	-	D	18555963	18555968	4	36	536.754	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	5	5	5	18	20	18	20	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674203002	4	23862720	T	TC	300	PASS	PPARGC1A	CCDS3429.1	r.?	-	-	Ins	intronic	I	23862720	23862723	1	12	265.367	-	-	2	1	1	PPARGC1A|CCDS3429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPARGC1A|CCDS3429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	9	20	9	0	0	./.	3	2	5	4	32	15	32	15	5	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674215303	4	60808647	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	60808647	60808653	1	36	530.132	-	-	5	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	5	5	8	6	27	35	27	35	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674216268	4	63429113	GT	G	569	PASS	-	-	-	-	-	Del	-	D	63429113	63429120	1	35	536.754	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	6	5	7	26	40	26	40	5	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674217981	4	68095733	C	CA	569	PASS	-	-	-	-	-	Ins	-	I	68095733	68095741	1	32	530.734	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	7	3	8	3	43	33	43	34	8	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674221146	4	77730588	TC	T	360	PASS	-	-	-	-	-	Del	-	D	77730588	77730590	1	7	307.001	-	-	1	1	-	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	6	0	7	0	25	36	25	36	7	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674222030	4	80649064	G	GAT	360	PASS	-	-	-	-	-	Ins	-	I	80649064	80649074	2	12	314.828	-	-	4	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	1	6	2	16	18	16	18	6	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674226014	4	92499516	TTATTATATA	T	261	PASS	FAM190A	CCDS47099.1	r.?	-	-	Del	intronic	D	92499516	92499528	9	30	483.079	-	-	1	1	1	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	4	5	5	5	17	20	17	20	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674230617	4	109133857	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	109133857	109133867	1	12	261.755	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	3	2	31	24	32	24	3	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674239398	4	134876435	AT	A	720	PASS	-	-	-	-	-	Del	-	D	134876435	134876445	1	49	644.105	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	6	8	7	34	24	34	24	8	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674240128	4	137310697	CAGA	C	329	PASS	-	-	-	-	-	Del	-	D	137310697	137310704	3	12	322.053	-	-	2	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	1	5	3	5	22	42	22	42	3	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674242702	4	145524917	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	145524917	145524934	2	12	264.765	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	3	2	26	32	26	32	3	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674243294	4	147794622	C	CTCTG	389	PASS	TTC29	CCDS47141.1	r.?	-	-	Ins	intronic	I	147794622	147794627	4	20	358.268	-	-	1	1	1	TTC29|CCDS47141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC29|CCDS47141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	3	4	3	4	22	30	22	30	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674245047	4	153874637	A	AT	300	PASS	FHDC1	CCDS34081.1	r.?	-	-	Ins	intronic	I	153874637	153874647	1	10	261.152	-	-	9	1	1	FHDC1|CCDS34081.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FHDC1|CCDS34081.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	1	4	29	25	29	25	1	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674248750	4	164790259	CA	C	480	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	164790259	164790265	1	24	428.801	-	-	5	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	5	3	6	14	23	14	23	3	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674249879	4	167753041	TC	T	509	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	167753041	167753043	1	24	483.079	-	-	1	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	7	4	10	23	29	23	29	4	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674252118	4	174804358	TC	T	360	PASS	-	-	-	-	-	Del	-	D	174804358	174804360	1	7	320.848	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	6	0	6	0	19	16	19	16	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674252237	4	175159853	TATATAAATTTGTAGGTAATATATAAA	TTAC	261	PASS	FBXO8	CCDS3820.1	r.?	-	-	Complex	intronic	DI	175159854	175159879	26	24	0	-	-	0	1	-	FBXO8|CCDS3820.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	FBXO8|CCDS3820.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	7	2	0	0	10	12	10	12	7	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674260784	5	3128794	CT	C	611	PASS	-	-	-	-	-	Del	-	D	3128794	3128796	1	54	697.625	-	-	1	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	8	5	13	6	34	19	34	19	13	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674262082	5	6484026	TTC	T	480	PASS	UBE2QL1	CCDS47189.1	r.?	-	-	Del	intronic	D	6484026	6484032	2	21	428.706	-	-	2	1	1	UBE2QL1|CCDS47189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2QL1|CCDS47189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	2	6	2	8	38	46	38	46	2	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674265976	5	17151381	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	17151381	17151396	2	12	268.317	-	-	7	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	3	34	29	34	29	2	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674268436	5	23626523	C	CA	877	PASS	-	-	-	-	-	Ins	-	I	23626523	23626530	1	72	794.115	-	-	6	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	7	8	10	9	43	55	44	55	11	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674268878	5	24719394	TC	T	360	PASS	-	-	-	-	-	Del	-	D	24719394	24719400	1	12	321.981	-	-	5	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	1	5	1	6	33	34	33	34	1	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674268986	5	25039301	TA	T	300	PASS	-	-	-	-	-	Del	-	D	25039301	25039308	1	12	268.317	-	-	6	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	3	5	8	23	24	23	24	5	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674269310	5	25777846	CA	C	629	PASS	-	-	-	-	-	Del	-	D	25777846	25777854	1	40	590.298	-	-	7	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	7	4	8	6	38	45	38	45	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674269639	5	26555121	AT	A	720	PASS	-	-	-	-	-	Del	-	D	26555121	26555123	1	48	643.961	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	7	5	7	12	22	24	22	24	7	12	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674269667	5	26596552	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	26596552	26596555	1	35	530.614	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	4	8	6	31	36	31	36	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674270820	5	29590265	A	AAG	300	PASS	-	-	-	-	-	Ins	-	I	29590265	29590267	2	6	262.297	-	-	0	1	-	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	0	1	0	35	35	35	37	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674274805	5	39730990	A	AG	329	PASS	-	-	-	-	-	Ins	-	I	39730990	39730993	1	15	318.368	-	-	2	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	4	2	5	3	40	19	41	19	5	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674278928	5	55268352	G	GCAA	1049	PASS	IL6ST	CCDS3971.1	r.?	-	-	Ins	intronic	I	55268352	55268356	3	96	932.829	-	-	1	1	1	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	11	12	0	0	./.	7	11	13	16	32	57	32	57	13	16	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674278936	5	55283319	TAAC	T	300	PASS	IL6ST	CCDS3971.1	r.?	-	-	Del	intronic	D	55283319	55283328	3	10	268.317	-	-	2	1	1	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	4	1	4	14	43	14	43	1	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674279259	5	56168710	AC	A	1289	PASS	MAP3K1	CCDS43318.1	r.1565delC	c.1565delC	p.V523fs*34	Del	frameshift	D	56168710	56168713	1	140	1178.79	-	-	2	1	1	MAP3K1|CCDS43318.1|r.1565delC|c.1565delC|p.V523fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MAP3K1|CCDS43318.1|r.1565delC|c.1565delC|p.V523fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	12	14	12	0	0	./.	9	13	9	18	27	40	27	40	9	18	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674280379	5	59240178	C	CT	269	PASS	PDE4D	CCDS47032.1	r.?	-	-	Ins	intronic	I	59240178	59240188	1	12	255.072	-	-	9	1	-	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	4	69	37	70	38	2	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674282284	5	65228792	AT	A	300	PASS	ERBB2IP	CCDS34172.1	r.?	-	-	Del	intronic	D	65228792	65228802	1	12	268.317	-	-	9	1	1	ERBB2IP|CCDS34172.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ERBB2IP|CCDS34172.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	2	3	33	61	33	61	2	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674288023	5	81545304	T	TA	269	PASS	ATG10	CCDS4057.1	r.?	-	-	Ins	intronic	I	81545304	81545307	1	12	265.307	-	-	2	1	1	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	2	4	42	28	42	28	2	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674289139	5	84519379	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	84519379	84519386	1	20	371.43	-	-	6	1	1	-	-	./.	0	0	0	0	13	15	13	16	0	0	./.	4	3	5	6	26	65	26	65	5	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674294875	5	103446010	CT	C	300	PASS	-	-	-	-	-	Del	-	D	103446010	103446018	1	12	268.317	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	4	3	41	23	41	23	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674295092	5	104178084	G	GA	300	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Ins	intronic	I	104178084	104178094	1	12	265.307	-	-	9	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	2	3	2	58	25	58	25	3	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674296491	5	108354773	A	AT	960	PASS	FER	CCDS4098.1	r.?	-	-	Ins	intronic	I	108354773	108354781	1	65	848.982	-	-	7	1	1	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	12	4	13	4	27	24	27	24	13	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674296740	5	108997979	TC	T	420	PASS	-	-	-	-	-	Del	-	D	108997979	108997981	1	14	375.644	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	6	2	6	23	39	23	39	2	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674301771	5	124095223	TTA	T	694	PASS	-	-	-	-	-	Del	-	D	124095223	124095226	2	64	751.288	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	7	7	11	14	52	42	52	42	11	14	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674304735	5	133272564	C	CT	1200	PASS	-	-	-	-	-	Ins	-	I	133272564	133272573	1	117	1060.63	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	8	12	10	21	28	58	28	58	10	21	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674305913	5	136886313	C	CA	507	PASS	-	-	-	-	-	Ins	-	I	136886313	136886322	1	75	953.901	-	-	8	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	14	4	13	8	47	23	51	25	15	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674311417	5	152198646	CA	C	480	PASS	-	-	-	-	-	Del	-	D	152198646	152198648	1	25	428.706	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	4	4	5	17	32	17	32	4	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674317697	5	170104832	GA	G	1020	PASS	KCNIP1	CCDS4374.1	r.?	-	-	Del	intronic	D	170104832	170104842	1	48	912.279	-	-	9	1	1	KCNIP1|CCDS4374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP1|CCDS4374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	15	2	17	2	34	19	34	19	17	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674319038	5	173380743	TC	T	329	PASS	CPEB4	CCDS4390.1	r.?	-	-	Del	intronic	D	173380743	173380745	1	12	306.929	-	-	1	1	1	CPEB4|CCDS4390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPEB4|CCDS4390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	1	7	1	33	25	33	25	7	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674320551	5	177061755	AT	A	326	PASS	-	-	-	-	-	Del	-	D	177061755	177061764	1	15	321.981	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	4	6	5	26	45	26	45	6	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674326563	6	12484771	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	12484771	12484775	1	15	319.342	-	-	3	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	2	4	4	21	18	22	18	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674349638	6	83026001	TG	T	600	PASS	-	-	-	-	-	Del	-	D	83026001	83026003	1	27	538.257	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	8	5	9	11	33	11	33	5	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674356351	6	108582322	A	AG	300	PASS	SNX3	CCDS5064.1	r.142_143insc	c.?	p.?	Ins	5'UTR variant	I	108582322	108582327	1	12	265.516	-	-	4	1	1	SNX3|CCDS5064.1|r.142_143insc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	SNX3|CCDS5064.1|r.142_143insc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	19	6	19	6	0	0	./.	2	3	2	4	16	21	16	22	2	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674358628	6	117064622	CCTTA	C	658	PASS	KPNA5	CCDS5111.1	r.?	-	-	Del	downstream	D	117064622	117064632	4	48	645.306	-	-	2	1	1	KPNA5|CCDS5111.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KPNA5|CCDS5111.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	9	15	9	0	0	./.	5	7	9	7	21	27	21	27	9	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674377624	7	13562498	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	13562498	13562500	1	12	260.167	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	4	5	13	15	13	15	4	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674378157	7	15388491	GA	G	300	PASS	TMEM195	CCDS34604.1	r.?	-	-	Del	intronic	D	15388491	15388501	1	12	269.198	-	-	9	1	1	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	2	3	2	4	14	13	14	13	2	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674380813	7	24706610	CTAAA	C	387	PASS	MPP6	CCDS5388.1	r.?	-	-	Del	intronic	D	24706610	24706617	4	21	430.717	-	-	1	1	1	MPP6|CCDS5388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MPP6|CCDS5388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	2	6	2	7	12	17	12	17	2	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674384653	7	37902894	TC	T	360	PASS	TXNDC3	CCDS5452.1	r.?	-	-	Del	intronic	D	37902894	37902896	1	12	323.038	-	-	1	1	1	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	1	8	4	20	15	20	15	8	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674391602	7	61787544	TAATCGAATGAAATCATCACTG	T	317	PASS	-	-	-	-	-	Del	-	D	61787544	61787569	21	36	699.313	-	-	1	1	1	-	-	./.	0	0	0	0	28	48	28	48	0	0	./.	2	11	0	0	114	142	114	142	2	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674396652	7	74089873	GT	G	509	PASS	GTF2I	CCDS5573.1	r.?	-	-	Del	intronic	D	74089873	74089882	1	10	484.556	-	-	8	1	1	GTF2I|CCDS5573.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GTF2I|CCDS5573.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	9	0	12	4	25	19	25	19	12	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674406681	7	109327181	GT	G	269	PASS	-	-	-	-	-	Del	-	D	109327181	109327190	1	12	269.198	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	2	3	3	5	18	20	18	20	3	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674407759	7	114113885	GA	G	540	PASS	FOXP2	CCDS43635.1	r.?	-	-	Del	intronic	D	114113885	114113887	1	28	483.954	-	-	1	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	6	3	7	4	16	10	16	10	7	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674409288	7	120246309	ATTG	A	329	PASS	KCND2	CCDS5776.1	r.?	-	-	Del	intronic	D	120246309	120246317	3	16	323.038	-	-	2	1	1	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	3	3	3	12	12	12	12	3	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674422783	8	4229700	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	4229700	4229708	1	36	529.294	-	-	7	1	1	-	-	./.	0	0	0	0	16	16	17	16	0	0	./.	5	5	7	7	12	12	12	12	7	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674422806	8	4294833	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	4294833	4294842	1	32	526.886	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	13	0	0	./.	7	3	8	6	16	11	16	11	8	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674423320	8	6026829	CA	C	480	PASS	-	-	-	-	-	Del	-	D	6026829	6026838	1	21	428.252	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	6	2	7	5	13	14	13	14	7	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674424276	8	10006649	TA	T	389	PASS	MSRA	CCDS47799.1	r.?	-	-	Del	intronic	D	10006649	10006651	1	8	355.454	-	-	1	1	1	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	7	0	10	0	26	10	26	10	10	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674429831	8	31315296	T	TTA	300	PASS	-	-	-	-	-	Ins	-	I	31315296	31315309	2	12	261.637	-	-	6	1	-	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	3	3	4	10	12	11	12	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674429860	8	31453487	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	31453487	31453496	1	16	423.435	-	-	8	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	7	1	7	2	13	8	13	8	7	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674435660	8	51370093	AAACAC	A	598	PASS	SNTG1	CCDS6147.1	r.?	-	-	Del	intronic	D	51370093	51370099	5	30	588.244	-	-	1	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	9	8	10	86	92	86	92	8	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674435803	8	51646260	ATG	A	395	PASS	SNTG1	CCDS6147.1	r.?	-	-	Del	intronic	D	51646260	51646266	2	21	428.252	-	-	2	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	6	2	7	3	78	92	78	92	7	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674435997	8	52106688	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	52106688	52106698	1	12	264.647	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	4	66	62	68	62	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674436302	8	52708918	A	AC	353	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	intronic	I	52708918	52708921	1	7	310.352	-	-	2	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	6	0	6	4	88	105	90	105	6	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674436663	8	53351840	GGT	G	420	PASS	-	-	-	-	-	Del	-	D	53351840	53351858	2	20	374.72	-	-	8	1	-	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	4	5	6	72	186	72	186	5	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674436975	8	53831833	ACTT	A	329	PASS	-	-	-	-	-	Del	-	D	53831833	53831841	3	12	319.985	-	-	2	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	1	5	5	5	68	77	68	77	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674438055	8	55581379	CTGAAAC	CCATA	375	PASS	RP1	ENST00000427058	r.?	-	-	Complex	intronic	DI	55581380	55581385	6	36	0	-	-	0	1	1	RP1|ENST00000427058|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	RP1|ENST00000427058|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	3	8	0	0	91	91	93	96	3	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674438348	8	56174447	TA	T	360	PASS	XKR4	CCDS34893.1	r.?	-	-	Del	intronic	D	56174447	56174456	1	16	320.587	-	-	8	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	4	4	83	69	83	69	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674438965	8	57107135	GGT	G	269	PASS	PLAG1	CCDS6165.1	r.?	-	-	Del	intronic	D	57107135	57107155	2	12	265.851	-	-	9	1	-	PLAG1|CCDS6165.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLAG1|CCDS6165.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	5	4	166	82	166	82	6	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674439470	8	58032069	TTG	T	420	PASS	-	-	-	-	-	Del	-	D	58032069	58032085	2	20	373.516	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	3	4	5	52	68	52	68	4	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674439791	8	58730387	AAT	A	389	PASS	-	-	-	-	-	Del	-	D	58730387	58730393	2	14	373.516	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	6	1	8	60	114	60	114	1	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674439869	8	58874368	A	AC	396	PASS	-	-	-	-	-	Ins	-	I	58874368	58874371	1	70	793.941	-	-	2	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	9	6	11	7	161	108	162	109	12	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674440671	8	60618734	C	CA	273	PASS	-	-	-	-	-	Ins	-	I	60618734	60618738	1	28	476.365	-	-	3	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	3	8	3	146	102	148	103	10	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674441271	8	61722252	AAG	A	360	PASS	CHD7	CCDS47865.1	r.?	-	-	Del	intronic	D	61722252	61722256	2	7	305.535	-	-	1	1	-	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	6	0	8	0	68	57	68	58	8	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674441295	8	61801767	TA	T	300	PASS	-	-	-	-	-	Del	-	D	61801767	61801773	1	6	262.841	-	-	5	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	0	5	0	9	108	95	108	95	0	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674442613	8	64280669	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	64280669	64280679	1	10	264.045	-	-	9	1	1	-	-	./.	0	0	0	0	22	9	22	9	0	0	./.	1	4	3	4	51	88	51	88	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674445834	8	70072666	AG	A	300	PASS	-	-	-	-	-	Del	-	D	70072666	70072668	1	6	264.045	-	-	1	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	5	0	18	0	47	17	48	17	18	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674445869	8	70119279	TC	T	389	PASS	-	-	-	-	-	Del	-	D	70119279	70119281	1	8	362.679	-	-	1	1	-	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	0	7	0	20	95	81	95	81	0	20	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674447311	8	72368565	G	GC	303	PASS	-	-	-	-	-	Ins	-	I	72368565	72368568	1	40	633.347	-	-	2	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	9	3	11	5	105	108	106	108	11	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674447500	8	72718463	AAC	A	360	PASS	-	-	-	-	-	Del	-	D	72718463	72718467	2	7	314.566	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	6	0	10	0	77	71	77	72	10	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674447915	8	73511820	C	CAAA	319	PASS	KCNB2	CCDS6209.1	r.?	-	-	Ins	intronic	I	73511820	73511822	3	50	672.429	-	-	1	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	9	4	8	5	196	108	199	109	10	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674448024	8	73759180	A	AG	261	PASS	KCNB2	CCDS6209.1	r.?	-	-	Ins	intronic	I	73759180	73759181	1	30	475.763	-	-	0	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	5	4	6	6	163	73	163	76	6	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674448054	8	73840429	T	TC	300	PASS	KCNB2	CCDS6209.1	r.?	-	-	Ins	intronic	I	73840429	73840430	1	10	263.443	-	-	0	1	-	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	4	1	13	5	90	88	91	89	13	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674448120	8	73926355	GGT	G	360	PASS	ENSG00000147601	CCDS6211.1	r.?	-	-	Del	intronic	D	73926355	73926372	2	15	321.189	-	-	8	1	1	ENSG00000147601|CCDS6211.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000147601|CCDS6211.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	4	4	4	63	72	63	72	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674448314	8	74243195	AAG	A	269	PASS	AC111149.1	ENST00000514599	r.?	-	-	Del	intronic	D	74243195	74243199	2	6	262.841	-	-	1	1	1	AC111149.1|ENST00000514599|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC111149.1|ENST00000514599|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	0	9	0	81	53	81	53	9	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674448895	8	74994487	CTCTT	C	418	PASS	-	-	-	-	-	Del	-	D	74994487	74994497	4	24	425.843	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	5	5	5	74	70	74	70	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674449338	8	75844431	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	75844431	75844432	1	24	416.211	-	-	0	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	5	4	6	73	99	74	99	4	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674449396	8	75975499	T	TA	320	PASS	-	-	-	-	-	Ins	-	I	75975499	75975505	1	40	582.223	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	12	0	0	./.	4	7	5	7	65	72	65	73	5	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674449431	8	76046321	A	AT	257	PASS	-	-	-	-	-	Ins	-	I	76046321	76046327	1	28	476.365	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	6	3	5	3	87	77	89	77	8	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674449946	8	76925889	AT	A	600	PASS	-	-	-	-	-	Del	-	D	76925889	76925891	1	35	532.304	-	-	1	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	6	8	9	66	63	66	63	8	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674450101	8	77224462	A	AAATCTCCTT	364	PASS	-	-	-	-	-	Ins	-	I	77224462	77224465	9	56	625.468	-	-	0	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	7	6	3	2	88	70	92	75	7	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674450224	8	77474537	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	77474537	77474547	1	14	366.893	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	6	3	8	111	100	111	101	3	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674450830	8	78663083	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	78663083	78663093	1	12	264.647	-	-	9	1	1	-	-	./.	0	0	0	0	13	19	13	20	0	0	./.	2	3	3	4	79	42	79	42	3	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674450836	8	78681084	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	78681084	78681102	2	12	267.657	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	3	2	4	2	74	41	74	41	4	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674453187	8	83323488	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	83323488	83323497	1	12	312.76	-	-	8	1	-	-	-	./.	0	0	0	0	17	4	17	4	0	0	./.	5	1	7	7	124	154	127	155	7	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674454055	8	84909854	AC	A	329	PASS	-	-	-	-	-	Del	-	D	84909854	84909856	1	7	312.158	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	6	0	12	0	87	132	87	132	12	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674457092	8	91227692	C	CT	1020	PASS	-	-	-	-	-	Ins	-	I	91227692	91227700	1	90	899.8	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	8	9	32	18	98	73	98	77	32	18	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674457114	8	91292697	T	TC	1380	PASS	-	-	-	-	-	Ins	-	I	91292697	91292698	1	156	1205.33	-	-	0	1	-	-	-	./.	0	0	0	0	9	13	9	14	0	0	./.	12	11	39	25	82	51	86	51	39	25	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674457272	8	91646177	CT	C	720	PASS	TMEM64	CCDS34920.2	r.?	-	-	Del	intronic	D	91646177	91646180	1	48	642.378	-	-	2	1	1	TMEM64|CCDS34920.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM64|CCDS34920.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	5	7	6	10	72	76	72	76	6	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674457700	8	92594096	T	TC	318	PASS	-	-	-	-	-	Ins	-	I	92594096	92594099	1	36	581.621	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	8	3	6	2	75	83	77	85	9	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674458933	8	94957164	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	94957164	94957181	2	10	267.657	-	-	8	1	-	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	2	6	85	71	85	71	2	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674459080	8	95241105	AT	A	660	PASS	-	-	-	-	-	Del	-	D	95241105	95241109	1	36	588.244	-	-	3	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	8	3	16	7	134	85	134	85	16	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674459114	8	95331330	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	95331330	95331348	2	12	267.657	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	2	3	4	2	66	46	66	46	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674459253	8	95494889	AG	A	360	PASS	-	-	-	-	-	Del	-	D	95494889	95494891	1	7	311.556	-	-	1	1	1	-	-	./.	0	0	0	0	2	12	2	12	0	0	./.	6	0	13	0	96	81	96	81	13	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674459589	8	95791737	TG	T	300	PASS	DPY19L4	CCDS34924.1	r.?	-	-	Del	intronic	D	95791737	95791739	1	6	265.249	-	-	1	1	1	DPY19L4|CCDS34924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPY19L4|CCDS34924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	0	8	0	62	87	62	87	8	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674459838	8	96051691	A	AG	300	PASS	C8orf38	CCDS6266.2	r.?	-	-	Ins	intronic	I	96051691	96051699	1	12	262.239	-	-	7	1	1	C8orf38|CCDS6266.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf38|CCDS6266.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	2	3	5	8	70	129	70	130	5	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674460182	8	96686258	TG	T	415	PASS	-	-	-	-	-	Del	-	D	96686258	96686260	1	8	337.392	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	7	0	27	0	98	66	98	66	27	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674460505	8	97289198	GCA	G	269	PASS	PTDSS1	CCDS6271.1	r.?	-	-	Del	intronic	D	97289198	97289202	2	6	263.443	-	-	1	1	-	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	0	5	0	7	155	71	155	71	0	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674460744	8	97682565	TG	T	600	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Del	intronic	D	97682565	97682568	1	36	534.713	-	-	2	1	-	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	5	5	5	76	103	76	103	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674462679	8	100614236	CCA	C	285	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100614236	100614241	2	30	481.783	-	-	2	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	4	7	4	98	92	99	94	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674462908	8	101060199	GT	G	360	PASS	RGS22	CCDS43758.1	r.?	-	-	Del	intronic	D	101060199	101060201	1	7	318.781	-	-	1	1	1	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	6	0	6	0	119	107	119	107	6	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674463128	8	101421893	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	101421893	101421911	2	15	320.587	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	7	7	85	95	85	95	7	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674463404	8	101805229	A	AT	6472	PASS	-	-	-	-	-	Ins	-	I	101805229	101805238	1	1953	5921.47	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	20	92	29	133	48	191	49	191	29	133	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674463964	8	102727693	C	CAAAATTGACA	254	PASS	NCALD	CCDS6292.1	r.?	-	-	Ins	intronic	I	102727693	102727696	10	24	380.087	-	-	0	1	1	NCALD|CCDS6292.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCALD|CCDS6292.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	5	4	1	187	68	193	73	6	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674464713	8	103962062	AG	A	360	PASS	-	-	-	-	-	Del	-	D	103962062	103962064	1	7	314.566	-	-	1	1	-	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	0	30	1	141	59	141	59	30	1	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674465373	8	105089211	A	AT	389	PASS	RIMS2	ENST00000507740	r.?	-	-	Ins	intronic	I	105089211	105089219	1	20	370.506	-	-	7	1	1	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	4	6	7	124	104	125	107	6	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674465923	8	106186727	TTTTG	T	1440	PASS	-	-	-	-	-	Del	-	D	106186727	106186749	4	153	1284.15	-	-	5	1	-	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	16	8	25	11	127	67	127	67	25	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674466866	8	107879354	TA	T	329	PASS	-	-	-	-	-	Del	-	D	107879354	107879358	1	15	312.158	-	-	3	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	2	10	4	121	86	121	86	10	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674468550	8	111059021	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	111059021	111059031	1	12	316.974	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	1	5	3	7	77	134	78	135	3	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674469080	8	112105032	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	112105032	112105051	2	12	320.587	-	-	9	1	-	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	5	1	6	5	84	91	84	91	6	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674469216	8	112377149	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	112377149	112377159	1	10	470.946	-	-	9	1	-	-	-	./.	0	0	0	0	21	9	22	9	0	0	./.	0	9	1	9	80	88	82	89	1	9	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674469661	8	113240275	AAT	A	360	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	113240275	113240290	2	16	320.587	-	-	7	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	3	5	5	99	129	99	129	5	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674471018	8	115997303	TAATG	T	348	PASS	-	-	-	-	-	Del	-	D	115997303	115997312	4	40	642.378	-	-	2	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	9	3	5	2	128	179	133	181	10	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674471215	8	116424551	GCA	G	449	PASS	TRPS1	CCDS6318.2	r.6188_6189delUG	c.?	p.?	Del	3'UTR variant	D	116424551	116424568	2	16	427.65	-	-	8	1	1	TRPS1|CCDS6318.2|r.6188_6189delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TRPS1|CCDS6318.2|r.6188_6189delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	14	13	14	0	0	./.	1	7	2	7	91	110	91	110	2	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674471568	8	117069441	AAG	A	360	PASS	AF130342.1	ENST00000505156	r.?	-	-	Del	intronic	D	117069441	117069460	2	16	321.189	-	-	9	1	-	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	3	71	71	71	71	4	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674471749	8	117379887	ACTT	A	360	PASS	-	-	-	-	-	Del	-	D	117379887	117379906	3	15	321.189	-	-	6	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	4	2	4	3	58	77	58	77	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674472404	8	118789873	GGCCGCGACCCCGTCTGGGAACTGAGGAGTGCCTCTGCCCGGCGGCGACCCTGTCTGGGAACTGAGGAGTGTCTCTGCCCC	G	555	PASS	-	-	-	-	-	Del	-	D	118789873	118789959	80	88	908.229	-	-	1	1	1	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	10	7	0	0	63	40	73	47	10	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674473319	8	120515781	AG	A	329	PASS	-	-	-	-	-	Del	-	D	120515781	120515783	1	7	305.535	-	-	1	1	-	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	6	0	18	0	169	72	169	72	18	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674474060	8	121651303	AC	A	325	PASS	SNTB1	CCDS6334.1	r.?	-	-	Del	intronic	D	121651303	121651306	1	48	642.378	-	-	2	1	1	SNTB1|CCDS6334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTB1|CCDS6334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	7	5	5	6	130	101	133	102	8	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674474257	8	122135872	C	CTT	268	PASS	-	-	-	-	-	Ins	-	I	122135872	122135875	2	45	627.928	-	-	2	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	4	8	3	9	81	146	85	147	4	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674474513	8	122596569	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	122596569	122596570	1	6	260.433	-	-	0	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	0	5	2	13	78	123	79	124	2	13	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674474781	8	122968712	AT	A	397	PASS	-	-	-	-	-	Del	-	D	122968712	122968714	1	20	370.506	-	-	1	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	4	3	6	3	79	78	79	78	6	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674475083	8	123561460	TG	T	600	PASS	-	-	-	-	-	Del	-	D	123561460	123561463	1	35	535.315	-	-	2	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	6	5	8	47	90	47	90	5	8	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674475283	8	123943644	AAG	A	329	PASS	ZHX2	CCDS6336.1	r.?	-	-	Del	intronic	D	123943644	123943659	2	12	316.974	-	-	7	1	1	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	1	5	1	10	64	118	64	118	1	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674476157	8	125248866	A	AT	689	PASS	ENSG00000214803	ENST00000399016	r.?	-	-	Ins	intronic	I	125248866	125248868	1	48	632.143	-	-	1	1	1	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	19	5	19	0	0	./.	7	5	8	10	60	135	61	137	8	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674477159	8	126704787	AG	A	360	PASS	-	-	-	-	-	Del	-	D	126704787	126704789	1	7	319.985	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	0	7	0	72	76	72	76	7	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674477429	8	127309626	AAG	A	540	PASS	-	-	-	-	-	Del	-	D	127309626	127309630	2	10	472.15	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	9	0	20	0	158	45	158	45	20	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674477550	8	127506074	TG	T	269	PASS	-	-	-	-	-	Del	-	D	127506074	127506076	1	6	234.544	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	5	0	29	0	90	75	90	75	29	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674477877	8	128153295	T	TG	449	PASS	-	-	-	-	-	Ins	-	I	128153295	128153302	1	24	422.833	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	4	4	74	66	74	69	5	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674478386	8	128941462	TTA	T	454	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128941462	128941466	2	10	479.977	-	-	1	1	-	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103705.2|ENST00000507144|r.3109_3110delUA|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	7	9	7	9	0	0	./.	9	0	9	0	49	68	49	68	11	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674478617	8	129383125	TCCTTCCTTCCTTCCTTCCTTCCTC	T	290	PASS	-	-	-	-	-	Del	-	D	129383125	129383153	24	32	534.11	-	-	1	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	7	0	0	21	34	22	38	3	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674478648	8	129461994	TAGTC	T	358	PASS	-	-	-	-	-	Del	-	D	129461994	129462002	4	20	374.72	-	-	1	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	4	3	5	4	84	64	84	64	5	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674479037	8	130370663	CATTCTGTTT	C	319	PASS	AC013300.1	ENST00000446592	r.?	-	-	Del	intronic	D	130370663	130370675	9	42	588.244	-	-	1	1	1	AC013300.1|ENST00000446592|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC013300.1|ENST00000446592|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	6	5	7	6	61	60	61	60	7	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674480206	8	132608135	A	AG	432	PASS	-	-	-	-	-	Ins	-	I	132608135	132608138	1	39	741.012	-	-	2	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	2	12	6	8	108	118	109	124	6	13	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674480532	8	133393197	AAC	A	360	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Del	intronic	D	133393197	133393201	2	7	319.383	-	-	1	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	6	0	14	0	66	64	66	64	14	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674480639	8	133613005	A	AT	293	PASS	LRRC6	CCDS6365.1	r.?	-	-	Ins	intronic	I	133613005	133613006	1	49	635.153	-	-	0	1	1	LRRC6|CCDS6365.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC6|CCDS6365.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	6	8	6	126	80	126	80	8	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674480658	8	133661599	A	AT	251	PASS	LRRC6	CCDS6365.1	r.?	-	-	Ins	intronic	I	133661599	133661600	1	27	529.294	-	-	0	1	1	LRRC6|CCDS6365.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC6|CCDS6365.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	8	2	8	3	155	114	156	114	9	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674481097	8	134598269	TGA	T	420	PASS	-	-	-	-	-	Del	-	D	134598269	134598274	2	14	374.118	-	-	2	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	1	6	2	10	60	102	60	102	2	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674481210	8	134812924	TTG	T	360	PASS	-	-	-	-	-	Del	-	D	134812924	134812940	2	12	321.189	-	-	7	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	1	12	3	279	63	279	63	12	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674482545	8	137670018	AG	A	300	PASS	-	-	-	-	-	Del	-	D	137670018	137670020	1	6	262.841	-	-	1	1	-	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	5	0	15	0	61	74	61	74	15	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674483333	8	139035693	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	139035693	139035703	1	21	423.435	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	14	14	0	0	./.	6	2	6	2	129	69	129	71	6	2	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674483465	8	139270113	AC	A	300	PASS	FAM135B	CCDS6375.2	r.?	-	-	Del	intronic	D	139270113	139270115	1	6	263.443	-	-	1	1	1	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	0	5	0	16	48	83	48	83	0	16	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674484250	8	141010726	G	GA	266	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Ins	intronic	I	141010726	141010732	1	28	476.365	-	-	5	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	6	3	5	1	65	120	68	122	7	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674485616	8	143390145	TCA	T	480	PASS	TSNARE1	CCDS6384.1	r.?	-	-	Del	intronic	D	143390145	143390161	2	24	427.65	-	-	7	1	1	TSNARE1|CCDS6384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSNARE1|CCDS6384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	5	4	6	78	150	78	150	4	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674485952	8	144061662	AAT	A	449	PASS	ENSG00000233536	ENST00000441886	r.?	-	-	Del	intronic	D	144061662	144061678	2	24	425.843	-	-	7	1	1	ENSG00000233536|ENST00000441886|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000233536|ENST00000441886|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	3	5	5	116	74	116	74	6	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674485995	8	144115570	TC	T	298	PASS	ENSG00000233536	ENST00000441886	r.?	-	-	Del	intronic	D	144115570	144115572	1	7	307.943	-	-	1	1	-	ENSG00000233536|ENST00000441886|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000233536|ENST00000441886|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	6	0	21	0	113	66	113	66	21	0	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674486783	8	145288351	TC	T	600	PASS	HEATR7A	CCDS47938.1	r.?	-	-	Del	intronic	D	145288351	145288354	1	32	534.713	-	-	2	1	1	HEATR7A|CCDS47938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HEATR7A|CCDS47938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	7	3	18	247	163	247	163	3	18	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674489477	9	8284731	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	8284731	8284733	1	24	427.063	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	13	9	0	0	./.	5	3	6	4	16	17	16	17	6	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674522154	X	6542103	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	6542103	6542113	1	12	266.201	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	2	5	13	27	13	27	2	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674528195	X	35808760	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	35808760	35808768	1	21	426.885	-	-	7	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	6	5	6	15	25	15	25	5	6	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674528527	X	37887110	CT	C	431	PASS	SYTL5	CCDS14244.1	r.?	-	-	Del	intronic	D	37887110	37887113	1	9	425.079	-	-	2	1	1	SYTL5|CCDS14244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYTL5|CCDS14244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	0	8	7	11	24	26	24	26	7	11	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674532519	X	57580529	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	57580529	57580539	1	10	266.803	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	1	7	3	27	9	27	9	7	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674533990	X	69709132	AT	A	480	PASS	DLG3	CCDS14403.1	r.?	-	-	Del	intronic	D	69709132	69709142	1	21	431.702	-	-	9	1	-	DLG3|CCDS14403.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG3|CCDS14403.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	6	2	9	4	26	16	26	16	9	4	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674536177	X	81059867	CT	C	720	PASS	-	-	-	-	-	Del	-	D	81059867	81059877	1	40	647.553	-	-	9	1	1	-	-	./.	0	0	0	0	27	17	27	17	0	0	./.	3	9	3	10	11	22	11	22	3	10	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674538804	X	93456652	TA	T	300	PASS	-	-	-	-	-	Del	-	D	93456652	93456655	1	12	269.814	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	4	3	18	19	18	19	4	3	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674539033	X	94789493	TTAA	T	337	PASS	-	-	-	-	-	Del	-	D	94789493	94789500	3	15	323.776	-	-	2	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	2	5	6	15	7	15	3	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674539256	X	95815199	AT	A	420	PASS	-	-	-	-	-	Del	-	D	95815199	95815201	1	20	377.137	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	3	7	5	27	13	27	13	7	5	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674542132	X	112791241	CT	C	540	PASS	-	-	-	-	-	Del	-	D	112791241	112791250	1	28	485.665	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	6	5	7	11	23	11	23	5	7	1	1	1	1	1	1	1	1
2586488	PD11354a	PD11354b	2674544160	X	120990850	TC	T	360	PASS	-	-	-	-	-	Del	-	D	120990850	120990852	1	15	323.776	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	2	5	3	14	16	14	16	5	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730804858	1	12505749	G	GA	660	PASS	VPS13D	CCDS30588.1	r.?	-	-	Ins	intronic	I	12505749	12505758	1	40	580.609	-	-	8	1	1	VPS13D|CCDS30588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13D|CCDS30588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	4	12	5	47	20	48	20	12	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730807247	1	19851831	C	CCT	267	PASS	-	-	-	-	-	Ins	-	I	19851831	19851832	2	12	304.654	-	-	0	1	-	-	-	./.	0	0	0	0	7	7	8	7	0	0	./.	5	1	2	0	33	30	34	30	7	1	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730807864	1	21617157	AC	A	540	PASS	ECE1	CCDS44082.1	r.?	-	-	Del	upstream	D	21617157	21617162	1	30	480.462	-	-	4	1	1	ECE1|CCDS44082.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ECE1|CCDS44081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	5	4	9	5	30	21	30	21	9	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730809304	1	24995147	GTCCAAATGC	G	667	PASS	SRRM1	CCDS255.1	r.?	-	-	Del	intronic	D	24995147	24995159	9	144	1226.04	-	-	1	1	1	SRRM1|CCDS255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRRM1|CCDS255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	8	15	9	16	23	49	24	49	10	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730809964	1	27554695	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	27554695	27554699	2	6	265.117	-	-	1	1	-	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	5	0	14	0	58	24	58	24	14	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730810235	1	28671341	CAATGCCAACTCT	C	290	PASS	-	-	-	-	-	Del	-	D	28671341	28671354	12	32	522.408	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	7	3	7	3	22	21	22	21	7	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730816026	1	50477910	G	GA	780	PASS	AGBL4	CCDS44137.1	r.?	-	-	Ins	intronic	I	50477910	50477920	1	54	686.174	-	-	9	1	1	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	8	5	10	7	33	15	33	15	10	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730816293	1	51900559	GTC	G	1049	PASS	EPS15	CCDS557.1	r.?	-	-	Del	intronic	D	51900559	51900564	2	100	957.312	-	-	2	1	1	EPS15|CCDS557.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPS15|CCDS557.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	9	9	19	11	63	33	63	33	19	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730816924	1	54396287	CCATTTATCTAACCCCACCAA	C	290	PASS	HSPB11	CCDS41341.1	r.?	-	-	Del	intronic	D	54396287	54396308	20	20	533.847	-	-	1	1	1	HSPB11|CCDS41341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HSPB11|CCDS41341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	22	9	22	0	0	./.	9	1	10	1	36	23	36	23	10	1	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730817447	1	56121247	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	56121247	56121256	1	56	684.368	-	-	8	1	-	-	-	./.	0	0	0	0	15	16	16	16	0	0	./.	7	6	14	10	55	38	55	39	14	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730817495	1	56289927	G	GA	509	PASS	-	-	-	-	-	Ins	-	I	56289927	56289932	1	10	475.044	-	-	4	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	9	0	18	7	40	23	40	24	18	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730817791	1	57500561	GTTAC	G	1287	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	57500561	57500568	4	150	1223.03	-	-	1	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	9	14	11	16	33	52	33	52	11	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730818649	1	61202262	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	61202262	61202272	1	36	526.02	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	5	7	12	30	35	30	36	7	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730819998	1	65174715	ATGGTTTGGATTTGTGCCCCCCCTGCCTCCAAATCTCATGTCAAATTGTAATCCGCAATGTTGGAGGAGGGGCCTGGTGGGAAGTGATTGGATCATGGGGAAGATTTCCCCCTTGCTATTCTTATAATAGTGAGTGAGTTCTCACAAGATCTGGTTGTTTGAAAGTGTGTTGTACAGTACCTCCCCCTTTACTTGCTTCCTCCTGCTCCAGCCATGTAAGTTGTACCTGCTTCCCCTTTGCCTTCCACCATGATTGAAAGTTTCCTGAGGCCTCCCCAGCTATGCTTCCTGTGAGCCAATTAAACCTCTTTTCTTTATAAATTACCCAGTCTCAGGTATTTCTTTATAGCAGTGTGGGAATGGACTAATACAGTATCAAATTATCTCATTATTTTCAATAGTAAAAGTTCAGAAATGAGAAAATCATGAAGAATTGATTAAAGAAACTATTATGCAATTGAATACCTTGCAATCATTTAAAATTGTTTTTAAAGAGTATATAATTACATGGGGGAAATGTACAAAATGTAAGTTTTGAAAGGAATAAAAAATGTTTAAAACCAGATTTAAAAATATATAGACAGACCAATTTGCATAGGTAAAAAAGTAAAATGCAAATGGTAACAATGGCTTTTTGATTGTTGTGAATGTTACAGATATTTAAATTTTTCTCTATATGTCTTTGTTTTCCAAACTTGTAACAATGATTGTTATTGCTTTAGTAAAGAAAAAAAAAGTTATTTTACAATGTTATTTTGGACACATAGTGGGTTAGCCAGACAGACAATTTTTCTGGAAAGTTTCCCCAAACTCCCACCCTAAATCCACAGCTTCATGGAGGTAAC	A	464	PASS	-	-	-	-	-	Del	-	D	65174715	65175561	844	77	854.155	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	6	10	0	0	5	21	11	31	6	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730825739	1	85348503	T	TA	600	PASS	LPAR3	CCDS700.1	r.?	-	-	Ins	intronic	I	85348503	85348513	1	32	526.622	-	-	9	1	1	LPAR3|CCDS700.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPAR3|CCDS700.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	15	18	0	0	./.	3	7	7	8	29	39	29	39	7	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730826530	1	87789700	C	CA	1260	PASS	LMO4	CCDS713.1	r.?	-	-	Ins	upstream	I	87789700	87789709	1	132	1107.23	-	-	8	1	1	LMO4|CCDS713.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	LMO4|CCDS713.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	9	13	9	0	0	./.	10	11	11	14	36	47	36	47	11	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730830260	1	100813856	AAG	A	298	PASS	CDC14A	CCDS769.1	r.?	-	-	Del	upstream	D	100813856	100813860	2	7	311.879	-	-	1	1	-	CDC14A|CCDS769.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CDC14A|CCDS769.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	12	14	12	0	0	./.	6	0	14	0	56	14	56	14	14	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730830637	1	102207102	G	GA	449	PASS	-	-	-	-	-	Ins	-	I	102207102	102207109	1	21	422.261	-	-	6	1	1	-	-	./.	0	0	0	0	19	5	21	5	0	0	./.	6	2	9	3	35	17	35	17	9	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730830738	1	102604753	T	TAC	360	PASS	-	-	-	-	-	Ins	-	I	102604753	102604767	2	15	311.879	-	-	6	1	-	-	-	./.	0	0	0	0	5	4	6	4	0	0	./.	4	2	0	1	23	33	23	33	4	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730831348	1	104394512	TTTAAG	T	358	PASS	-	-	-	-	-	Del	-	D	104394512	104394521	5	65	847.532	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	12	5	15	20	39	20	39	5	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730831357	1	104429889	G	GT	1227	PASS	-	-	-	-	-	Ins	-	I	104429889	104429898	1	144	1158.81	-	-	8	1	1	-	-	./.	0	0	0	0	20	7	20	7	0	0	./.	11	11	17	15	38	48	38	48	17	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730833066	1	109816916	C	CA	480	PASS	CELSR2	CCDS796.1	r.9078_9079insa	c.?	p.?	Ins	3'UTR variant	I	109816916	109816919	1	24	421.057	-	-	2	1	1	CELSR2|CCDS796.1|r.9078_9079insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CELSR2|CCDS796.1|r.9078_9079insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	13	12	13	0	0	./.	5	3	9	5	23	15	23	15	9	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730834279	1	114345514	CTTG	C	716	PASS	RSBN1	CCDS862.1	r.?	-	-	Del	intronic	D	114345514	114345522	3	63	741.365	-	-	2	1	1	RSBN1|CCDS862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSBN1|CCDS862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	8	10	8	27	19	27	19	10	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730842870	1	155861102	A	AC	358	PASS	-	-	-	-	-	Ins	-	I	155861102	155861107	1	8	317.701	-	-	4	1	1	-	-	./.	0	0	0	0	13	1	13	1	0	0	./.	0	7	0	12	44	37	45	37	0	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730845391	1	164541486	TA	T	900	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164541486	164541490	1	60	800.168	-	-	3	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	2	17	2	0	0	./.	11	4	16	10	66	31	66	31	16	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730849464	1	178896981	GT	G	360	PASS	-	-	-	-	-	Del	-	D	178896981	178896983	1	7	320.308	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	0	9	0	44	37	44	37	9	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730850809	1	182351297	TTAA	T	538	PASS	GLUL	CCDS1344.1	r.3903_3905delUUA	c.?	p.?	Del	3'UTR variant	D	182351297	182351306	3	36	533.847	-	-	2	1	1	GLUL|CCDS1344.1|r.3903_3905delUUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GLUL|CCDS1344.1|r.3903_3905delUUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	7	11	7	0	0	./.	5	5	8	7	40	40	40	40	8	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730851702	1	185687942	GTTTC	G	1316	PASS	-	-	-	-	-	Del	-	D	185687942	185687950	4	168	1281.23	-	-	1	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	11	13	15	16	37	53	37	54	15	17	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730854234	1	192831023	AT	A	1140	PASS	-	-	-	-	-	Del	-	D	192831023	192831025	1	98	1007.69	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	6	13	13	20	48	62	48	62	13	20	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730856089	1	198809396	AG	A	960	PASS	-	-	-	-	-	Del	-	D	198809396	198809398	1	80	851.144	-	-	1	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	9	7	18	12	66	46	66	46	18	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730856141	1	199099704	T	TA	1140	PASS	-	-	-	-	-	Ins	-	I	199099704	199099713	1	104	1001.06	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	7	12	11	17	67	67	67	68	11	17	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730859382	1	209115573	A	AAC	319	PASS	-	-	-	-	-	Ins	-	I	209115573	209115575	2	40	564.353	-	-	0	1	-	-	-	./.	0	0	0	0	15	10	16	10	0	0	./.	4	7	1	0	29	52	31	52	5	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730860471	1	212427055	C	CC	418	PASS	-	-	-	-	-	Ins	-	I	212427054	212427056	1	9	421.659	-	-	1	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	0	8	1	0	46	40	46	40	1	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730862426	1	219341073	TTTTCGTACC	T	609	PASS	-	-	-	-	-	Del	-	D	219341073	219341084	9	120	1119.87	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	14	7	17	8	91	45	91	45	17	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730864539	1	226390747	AG	A	300	PASS	-	-	-	-	-	Del	-	D	226390747	226390749	1	6	263.311	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	0	13	0	63	50	63	50	13	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730866420	1	232493488	T	TA	929	PASS	-	-	-	-	-	Ins	-	I	232493488	232493498	1	77	844.522	-	-	9	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	10	6	17	7	82	38	82	39	17	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730868801	1	238988336	G	GT	900	PASS	-	-	-	-	-	Ins	-	I	238988336	238988344	1	70	790.535	-	-	7	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	9	9	12	51	46	51	47	9	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730869262	1	240300437	CAT	C	509	PASS	FMN2	CCDS31069.2	r.?	-	-	Del	intronic	D	240300437	240300440	2	28	480.462	-	-	1	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	6	3	12	3	46	28	46	28	12	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730869314	1	240359164	T	TA	960	PASS	FMN2	CCDS31069.2	r.?	-	-	Ins	intronic	I	240359164	240359173	1	77	843.318	-	-	8	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	19	0	0	./.	10	6	14	10	66	41	67	41	14	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730870118	1	242275635	A	ATG	296	PASS	PLD5	CCDS1621.1	r.?	-	-	Ins	intronic	I	242275635	242275637	2	20	362.254	-	-	0	1	-	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	4	2	0	20	59	22	59	5	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730870308	1	242706110	TA	T	374	PASS	-	-	-	-	-	Del	-	D	242706110	242706118	1	18	373.693	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	6	6	39	19	39	19	6	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730873437	10	1813138	GA	G	790	PASS	-	-	-	-	-	Del	-	D	1813138	1813148	1	80	855.893	-	-	9	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	9	12	12	31	35	31	35	12	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730876073	10	8111432	TCA	T	960	PASS	GATA3	CCDS31143.1	r.1493-3_1493-2delca	c.925-3_925-2delca	p.?	Del	ess splice	D	8111432	8111435	2	80	855.291	-	-	1	1	1	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	12	8	12	8	0	0	./.	7	9	11	9	27	28	27	28	11	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730876076	10	8114110	G	GC	569	PASS	GATA3	CCDS31143.1	r.?	-	-	Ins	intronic	I	8114110	8114112	1	32	525.601	-	-	1	1	1	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	7	3	10	7	37	25	37	25	10	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730887079	10	42395477	TG	T	1187	PASS	-	-	-	-	-	Del	-	D	42395477	42395479	1	126	1123.51	-	-	1	1	1	-	-	./.	0	0	0	0	374	41	406	57	0	0	./.	8	13	13	14	176	293	216	345	13	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730888557	10	44484815	CT	C	989	PASS	-	-	-	-	-	Del	-	D	44484815	44484817	1	78	911.343	-	-	1	1	-	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	12	9	15	28	41	28	41	9	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730888846	10	45607346	GTC	G	420	PASS	-	-	-	-	-	Del	-	D	45607346	45607351	2	20	372.497	-	-	2	1	-	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	3	4	3	7	20	26	20	26	3	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730890696	10	54621417	A	AT	1206	PASS	-	-	-	-	-	Ins	-	I	54621417	54621423	1	102	1113.88	-	-	5	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	16	8	19	32	49	32	50	8	19	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730891968	10	57832127	T	TA	1649	PASS	-	-	-	-	-	Ins	-	I	57832127	57832134	1	176	1483.97	-	-	6	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	21	7	26	9	64	26	65	26	26	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730897710	10	76699149	G	GT	780	PASS	MYST4	CCDS7345.1	r.?	-	-	Ins	intronic	I	76699149	76699157	1	54	689.543	-	-	7	1	1	MYST4|CCDS7345.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYST4|CCDS7345.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	8	5	13	10	36	34	36	34	13	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730901822	10	92436336	AT	A	660	PASS	-	-	-	-	-	Del	-	D	92436336	92436341	1	40	590.082	-	-	4	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	7	4	0	1	40	30	40	30	7	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730913230	10	130143057	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	130143057	130143067	1	40	583.46	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	7	11	11	35	44	36	45	11	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730913664	10	131769836	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	131769836	131769845	1	12	262.199	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	1	0	18	18	19	18	4	2	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730915018	11	843532	A	AC	600	PASS	CD151	CCDS7719.1	r.?	-	-	Ins	downstream	I	843532	843538	1	32	525.41	-	-	5	1	1	CD151|CCDS7719.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TSPAN4|CCDS7721.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	7	3	12	2	33	19	33	20	12	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730923060	11	25726354	G	GA	1260	PASS	-	-	-	-	-	Ins	-	I	25726354	25726363	1	120	1108.12	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	7	14	10	18	30	50	30	50	10	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730924824	11	31974361	T	TACAC	687	PASS	-	-	-	-	-	Ins	-	I	31974361	31974379	4	56	662.383	-	-	8	1	-	-	-	./.	0	0	0	0	11	1	12	1	0	0	./.	6	7	14	12	29	44	29	45	14	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730926356	11	37506582	GATA	G	596	PASS	-	-	-	-	-	Del	-	D	37506582	37506586	3	48	643.617	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	7	5	13	26	37	26	37	5	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730931582	11	57170045	GAAACAAAC	G	261	PASS	SLC43A3	CCDS7956.1	r.?	-	-	Del	downstream	D	57170045	57170073	8	30	482.562	-	-	6	1	-	SLC43A3|CCDS7956.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC43A3|CCDS7956.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	5	7	31	25	31	25	5	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730932711	11	61319246	AAC	A	614	PASS	SYT7	CCDS31577.1	r.?	-	-	Del	intronic	D	61319246	61319252	2	42	586.922	-	-	2	1	1	SYT7|CCDS31577.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT7|CCDS31577.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	6	10	8	26	28	26	28	10	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730941000	11	91875813	CA	C	1500	PASS	-	-	-	-	-	Del	-	D	91875813	91875815	1	126	1340.32	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	20	12	29	34	67	34	67	12	29	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730942459	11	97352492	GT	G	840	PASS	-	-	-	-	-	Del	-	D	97352492	97352500	1	64	750.385	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	7	7	9	13	27	46	27	46	9	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730942593	11	97803251	ATT	A	1105	PASS	-	-	-	-	-	Del	-	D	97803251	97803261	2	112	1120.16	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	15	7	16	29	55	29	55	7	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730943706	11	100712356	CA	C	1020	PASS	ENSG00000165895	CCDS44715.1	r.?	-	-	Del	intronic	D	100712356	100712358	1	78	910.236	-	-	1	1	1	ENSG00000165895|CCDS44715.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000165895|CCDS44715.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	5	12	8	18	27	37	27	37	8	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730948600	11	116863042	C	CA	329	PASS	SIK3	CCDS8379.1	r.?	-	-	Ins	intronic	I	116863042	116863052	1	16	316.691	-	-	9	1	1	SIK3|CCDS8379.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SIK3|CCDS8379.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	10	7	48	31	49	31	10	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730951222	11	125519841	T	TTACTGAGATA	580	PASS	CHEK1	CCDS8459.1	r.?	-	-	Ins	intronic	I	125519841	125519849	10	112	953.287	-	-	0	1	1	CHEK1|CCDS8459.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHEK1|CCDS8459.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	14	0	0	./.	13	7	13	3	59	22	62	26	14	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730951795	11	127508867	G	GA	1020	PASS	-	-	-	-	-	Ins	-	I	127508867	127508874	1	78	900.603	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	12	7	16	21	46	21	46	7	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730960102	12	18358344	C	CT	906	PASS	-	-	-	-	-	Ins	-	I	18358344	18358351	1	77	842.103	-	-	6	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	10	6	13	10	40	27	40	27	13	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730961478	12	22335773	CCTA	C	778	PASS	-	-	-	-	-	Del	-	D	22335773	22335777	3	60	750.989	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	9	5	11	12	32	31	32	31	11	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730964664	12	32010296	AG	A	360	PASS	-	-	-	-	-	Del	-	D	32010296	32010298	1	7	318.498	-	-	1	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	6	0	24	0	48	16	48	16	24	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730964807	12	32206808	TAATC	T	985	PASS	-	-	-	-	-	Del	-	D	32206808	32206816	4	110	1018.81	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	10	9	12	14	29	30	29	30	12	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730965589	12	38235713	CAAAGG	C	1014	PASS	-	-	-	-	-	Del	-	D	38235713	38235724	5	120	1070.09	-	-	2	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	11	9	15	10	42	35	42	36	15	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730971658	12	59762536	T	TGA	298	PASS	-	-	-	-	-	Ins	-	I	59762536	59762555	2	15	302.242	-	-	9	1	-	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	5	4	29	26	29	26	6	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730973399	12	66001891	ATTACATAAAAGCATTGAGATTTGAAGGCTATTTATTCTTGTAGTAACCCTATCCCAACTAACAACAGAAAATTATACAAATAGTAAAAGAATTCAAGATAACATATT	A	319	PASS	-	-	-	-	-	Del	-	D	66001891	66002002	107	30	589.934	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	9	0	0	32	13	34	22	2	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730976244	12	76494358	AAAAC	A	629	PASS	-	-	-	-	-	Del	-	D	76494358	76494374	4	30	590.536	-	-	3	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	9	2	11	3	36	20	36	20	11	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730977589	12	81546628	T	TA	300	PASS	ACSS3	CCDS9022.1	r.?	-	-	Ins	intronic	I	81546628	81546635	1	10	264.813	-	-	6	1	1	ACSS3|CCDS9022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACSS3|CCDS9022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	1	4	2	4	24	37	25	37	2	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730978030	12	83173804	A	AC	360	PASS	TMTC2	CCDS9025.1	r.?	-	-	Ins	intronic	I	83173804	83173805	1	16	318.498	-	-	0	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	18	0	0	./.	3	3	0	0	28	27	30	27	3	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730980539	12	92995377	TG	T	480	PASS	-	-	-	-	-	Del	-	D	92995377	92995379	1	9	422.256	-	-	1	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	8	0	13	0	40	31	40	31	13	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730984839	12	107451889	T	TA	780	PASS	CRY1	CCDS9112.1	r.?	-	-	Ins	intronic	I	107451889	107451898	1	54	690.079	-	-	8	1	1	CRY1|CCDS9112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CRY1|CCDS9112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	8	5	9	6	42	35	42	35	9	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730989170	12	122997995	CTT	C	1049	PASS	RSRC2	CCDS9234.1	r.?	-	-	Del	intronic	D	122997995	122997999	2	84	965.127	-	-	3	1	1	RSRC2|CCDS9234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSRC2|CCDS9234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	1	11	1	0	0	./.	13	5	14	5	44	25	44	25	14	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730993423	13	19870393	C	CA	1260	PASS	-	-	-	-	-	Ins	-	I	19870393	19870402	1	132	1117.15	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	11	10	11	13	32	42	32	42	12	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730994326	13	21570483	AT	A	780	PASS	LATS2	CCDS9294.1	r.?	-	-	Del	intronic	D	21570483	21570492	1	56	698.562	-	-	8	1	1	LATS2|CCDS9294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LATS2|CCDS9294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	7	6	12	12	37	30	37	30	12	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2730996416	13	26724203	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	26724203	26724209	2	6	269.141	-	-	2	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	0	5	0	1	33	58	33	58	0	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731005457	13	56750193	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	56750193	56750201	1	63	742.155	-	-	7	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	6	8	8	11	34	35	34	35	8	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731016995	13	93864841	C	CA	900	PASS	-	-	-	-	-	Ins	-	I	93864841	93864848	1	72	797.188	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	7	8	8	10	33	32	33	32	8	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731017832	13	96260875	TACTCTGGGC	T	899	PASS	DZIP1	CCDS9478.1	r.?	-	-	Del	intronic	D	96260875	96260888	9	252	1668.67	-	-	1	1	1	DZIP1|CCDS9478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DZIP1|CCDS9478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	11	20	12	21	30	40	30	40	12	21	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731019907	13	102927610	CTT	C	389	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102927610	102927614	2	18	370.175	-	-	3	1	-	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	5	2	11	3	35	23	35	23	11	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731026449	14	27254489	A	AG	1140	PASS	-	-	-	-	-	Ins	-	I	27254489	27254492	1	108	1008.85	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	14	0	0	./.	11	8	15	14	32	35	32	35	15	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731026727	14	28101024	CA	C	1049	PASS	-	-	-	-	-	Del	-	D	28101024	28101029	1	99	968.239	-	-	4	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	10	8	13	8	28	27	28	27	13	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731027150	14	29249841	A	AT	1380	PASS	C14orf23	ENST00000399387	r.?	-	-	Ins	intronic	I	29249841	29249849	1	154	1223.68	-	-	7	1	1	C14orf23|ENST00000399387|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C14orf23|ENST00000399387|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	14	14	0	0	./.	10	13	16	14	47	43	47	43	16	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731029605	14	37326556	CAGGTGACCTTGCAGAGAG	C	667	PASS	SLC25A21	CCDS9663.1	r.?	-	-	Del	intronic	D	37326556	37326578	18	154	1235.72	-	-	1	1	1	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	13	10	16	12	50	33	50	33	16	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731030341	14	39930340	CT	C	987	PASS	-	-	-	-	-	Del	-	D	39930340	39930344	1	100	965.831	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	9	9	13	13	32	35	32	35	13	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731031916	14	44914356	GA	G	1169	PASS	-	-	-	-	-	Del	-	D	44914356	44914364	1	105	1077.16	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	14	7	19	26	44	26	44	7	19	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731031958	14	45161346	TCTTTTAAAAAGAGAA	TTAC	406	PASS	-	-	-	-	-	Complex	-	DI	45161347	45161361	15	39	0	-	-	0	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	12	0	0	35	21	35	21	2	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731034016	14	51681748	A	AAGTC	471	PASS	-	-	-	-	-	Ins	-	I	51681748	51681751	4	30	771.144	-	-	0	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	14	1	0	0	24	62	40	65	14	1	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731038860	14	67567412	G	GT	697	PASS	GPHN	CCDS9777.1	r.?	-	-	Ins	intronic	I	67567412	67567414	1	49	639.071	-	-	1	1	1	GPHN|CCDS9777.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPHN|CCDS9777.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	11	13	0	0	./.	6	6	8	11	26	27	28	30	8	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731040363	14	73295004	CTATGGGGAGGAGAAGTGAGGACGTGGTCCCTGTCTCCA	C	377	PASS	DPF3	CCDS45133.1	r.?	-	-	Del	intronic	D	73295004	73295043	38	44	699.551	-	-	1	1	1	DPF3|CCDS45133.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPF3|CCDS45133.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	10	3	3	1	33	13	40	15	10	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731041335	14	76231116	G	GT	780	PASS	TTLL5	CCDS32124.1	r.1913+1_1913+2insu	c.1708+1_1708+2insT	p.?	Ins	ess splice	I	76231116	76231118	1	44	692.327	-	-	1	1	1	TTLL5|CCDS32124.1|r.1913+1_1913+2insu|c.1708+1_1708+2insT|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	TTLL5|CCDS32124.1|r.1913+1_1913+2insu|c.1708+1_1708+2insT|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	./.	0	0	0	0	14	18	14	19	0	0	./.	10	3	11	7	41	21	43	21	11	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731044316	14	86176633	C	CA	809	PASS	-	-	-	-	-	Ins	-	I	86176633	86176640	1	63	739.562	-	-	6	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	8	10	10	30	44	30	44	10	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731045025	14	88574052	GA	G	1175	PASS	-	-	-	-	-	Del	-	D	88574052	88574061	1	60	1126.8	-	-	8	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	2	19	3	25	32	54	32	54	3	25	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731045834	14	91355267	GA	G	960	PASS	RPS6KA5	CCDS9893.1	r.?	-	-	Del	intronic	D	91355267	91355271	1	72	858.717	-	-	3	1	1	RPS6KA5|CCDS9893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS6KA5|CCDS9893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	26	16	26	0	0	./.	5	11	7	16	21	38	21	38	7	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731060986	15	53663211	TA	T	1140	PASS	-	-	-	-	-	Del	-	D	53663211	53663216	1	104	1024.22	-	-	4	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	12	7	18	9	66	21	66	21	18	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731062685	15	58625367	GGT	G	809	PASS	-	-	-	-	-	Del	-	D	58625367	58625371	2	60	749.874	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	5	9	10	10	17	23	17	23	10	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731063081	15	59826671	AC	A	1177	PASS	-	-	-	-	-	Del	-	D	59826671	59826674	1	144	1291.95	-	-	2	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	17	7	22	9	49	32	49	32	22	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731066870	15	71723119	A	AG	269	PASS	THSD4	CCDS10238.2	r.?	-	-	Ins	intronic	I	71723119	71723120	1	12	252.073	-	-	0	1	-	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	3	2	4	7	26	17	26	17	4	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731067351	15	73067537	G	GA	1080	PASS	ADPGK	CCDS42057.1	r.?	-	-	Ins	intronic	I	73067537	73067544	1	96	957.673	-	-	6	1	1	ADPGK|CCDS42057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADPGK|CCDS42057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	7	11	9	19	37	47	38	49	9	19	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731069721	15	81007842	ATGAG	A	985	PASS	FAM108C1	CCDS45323.1	r.?	-	-	Del	intronic	D	81007842	81007853	4	108	1023.02	-	-	2	1	1	FAM108C1|CCDS45323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM108C1|CCDS45323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	8	11	13	13	27	37	27	37	13	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731071429	15	88035908	CA	C	1289	PASS	-	-	-	-	-	Del	-	D	88035908	88035911	1	128	1185.94	-	-	2	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	15	7	19	11	56	41	56	41	19	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731071463	15	88241905	GA	G	279	PASS	-	-	-	-	-	Del	-	D	88241905	88241908	1	11	539.065	-	-	2	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	0	10	2	0	48	30	48	49	2	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731074195	15	97959712	A	AGT	356	PASS	-	-	-	-	-	Ins	-	I	97959712	97959717	2	11	525.217	-	-	2	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	0	10	0	28	55	70	55	70	0	31	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731075266	15	101133776	GT	G	360	PASS	LINS1	CCDS10385.1	r.?	-	-	Del	intronic	D	101133776	101133778	1	7	310.796	-	-	1	1	1	LINS1|CCDS10385.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINS1|CCDS10385.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	6	0	8	0	44	18	44	18	8	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731077700	16	6798122	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	6798122	6798131	1	60	800.095	-	-	8	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	11	7	13	29	57	30	57	7	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731081655	16	17921872	G	GA	869	PASS	-	-	-	-	-	Ins	-	I	17921872	17921881	1	72	799.493	-	-	8	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	7	8	12	14	36	41	36	41	12	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731085072	16	29263344	AG	A	658	PASS	-	-	-	-	-	Del	-	D	29263344	29263348	1	33	645.494	-	-	3	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	10	2	15	5	36	19	36	19	15	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731094300	16	71303219	GA	G	1049	PASS	-	-	-	-	-	Del	-	D	71303219	71303229	1	84	966.134	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	13	5	18	6	30	14	30	14	18	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731100266	17	2120803	AC	A	877	PASS	SMG6	CCDS11016.1	r.?	-	-	Del	intronic	D	2120803	2120805	1	66	805.645	-	-	1	1	1	SMG6|CCDS11016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMG6|CCDS11016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	3	7	3	0	0	./.	5	10	6	16	18	31	18	31	6	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731105197	17	16064870	CA	C	1147	PASS	NCOR1	CCDS11175.1	r.?	-	-	Del	intronic	D	16064870	16064874	1	130	1118.63	-	-	3	1	1	NCOR1|CCDS11175.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCOR1|CCDS11175.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	9	12	15	15	53	35	53	35	15	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731113633	17	44857974	CT	C	591	PASS	WNT3	CCDS11505.1	r.?	-	-	Del	intronic	D	44857974	44857976	1	40	591.971	-	-	1	1	1	WNT3|CCDS11505.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WNT3|CCDS11505.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	7	4	10	7	23	25	23	25	10	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731116133	17	52887656	CA	C	840	PASS	-	-	-	-	-	Del	-	D	52887656	52887660	1	63	752.979	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	8	8	11	42	27	42	27	8	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731117551	17	57515876	TC	T	300	PASS	-	-	-	-	-	Del	-	D	57515876	57515878	1	6	259.718	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	6	0	38	37	38	37	6	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731118669	17	61577266	GT	G	497	PASS	ACE	CCDS11637.1	r.?	-	-	Del	downstream	D	61577266	61577271	1	18	484.832	-	-	4	1	1	ACE|CCDS11637.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ACE|CCDS11637.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	17	6	17	0	0	./.	8	1	14	7	33	24	33	24	14	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731119584	17	64662820	C	CA	1200	PASS	PRKCA	CCDS11664.1	r.?	-	-	Ins	intronic	I	64662820	64662826	1	120	1064.16	-	-	5	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	9	11	14	13	39	37	40	37	14	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731120287	17	66327791	CT	C	803	PASS	ARSG	CCDS11676.1	r.?	-	-	Del	intronic	D	66327791	66327793	1	60	750.571	-	-	1	1	1	ARSG|CCDS11676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARSG|CCDS11676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	9	5	20	7	51	17	51	17	20	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731131806	18	20528332	T	TTTTA	1020	PASS	RBBP8	CCDS11875.1	r.?	-	-	Ins	intronic	I	20528332	20528360	4	90	873.859	-	-	6	1	-	RBBP8|CCDS11875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBBP8|CCDS11875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	9	8	16	12	56	60	56	60	16	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731134622	18	30778242	CTCTA	C	689	PASS	C18orf34	CCDS42424.1	r.?	-	-	Del	intronic	D	30778242	30778254	4	45	647.015	-	-	2	1	-	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	8	14	13	48	36	49	36	15	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731136282	18	38309402	A	ATTTG	313	PASS	-	-	-	-	-	Ins	-	I	38309402	38309407	4	22	565.403	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	10	1	10	2	51	41	53	41	12	2	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731136621	18	39804201	TC	T	300	PASS	-	-	-	-	-	Del	-	D	39804201	39804203	1	6	261.763	-	-	1	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	5	0	12	0	41	31	41	31	12	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731150786	19	5598790	GAGGC	G	1103	PASS	SAFB2	CCDS32879.1	r.1994+10_1994+13delgccu	c.1782+10_1782+13delgcct	p.?	Del	splice region	D	5598790	5598796	4	143	1186.78	-	-	1	1	1	SAFB2|CCDS32879.1|r.1994+10_1994+13delgccu|c.1782+10_1782+13delgcct|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	SAFB2|CCDS32879.1|r.1994+10_1994+13delgccu|c.1782+10_1782+13delgcct|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	9	6	9	6	0	0	./.	10	12	14	13	28	29	28	29	14	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731164158	19	44813382	CA	C	254	PASS	ZNF235	CCDS33048.1	r.?	-	-	Del	upstream	D	44813382	44813386	1	13	647.335	-	-	3	1	1	ZNF235|CCDS33048.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF235|ENST00000391957|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	22	7	22	0	0	./.	12	0	0	1	28	50	40	50	12	1	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731169330	19	57106567	GA	G	300	PASS	ZNF71	CCDS12947.1	r.?	-	-	Del	upstream	D	57106567	57106574	1	10	268.519	-	-	6	1	1	ZNF71|CCDS12947.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZNF71|CCDS12947.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	19	9	19	9	0	0	./.	1	4	2	9	14	23	14	23	2	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731170146	2	14265	CT	C	1016	PASS	-	-	-	-	-	Del	-	D	14265	14267	1	104	1014.78	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	7	12	10	15	22	40	22	40	10	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731173303	2	10919833	A	AAG	277	PASS	ATP6V1C2	CCDS1674.1	r.?	-	-	Ins	intronic	I	10919833	10919834	2	12	257.573	-	-	0	1	-	ATP6V1C2|CCDS1674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP6V1C2|CCDS1674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	2	10	2	0	0	./.	2	3	6	8	17	20	18	20	6	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731174505	2	15007106	AC	A	1229	PASS	-	-	-	-	-	Del	-	D	15007106	15007108	1	126	1121.06	-	-	1	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	8	13	11	18	39	60	39	60	11	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731176527	2	23231306	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	23231306	23231315	1	40	634.068	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	15	16	0	0	./.	3	9	10	11	28	50	28	50	10	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731176954	2	24393578	T	TC	420	PASS	ENSG00000186453	CCDS42659.1	r.?	-	-	Ins	upstream	I	24393578	24393579	1	8	369.271	-	-	0	1	-	ENSG00000186453|CCDS42659.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000186453|CCDS42659.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	7	10	7	0	0	./.	0	7	7	10	33	40	33	40	7	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731180732	2	36241955	GC	G	780	PASS	-	-	-	-	-	Del	-	D	36241955	36241958	1	56	693.53	-	-	2	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	6	7	9	13	30	41	30	41	9	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731181445	2	38010533	T	TA	298	PASS	-	-	-	-	-	Ins	-	I	38010533	38010534	1	16	317.034	-	-	0	1	-	-	-	./.	0	0	0	0	13	4	14	4	0	0	./.	3	3	0	0	23	32	24	32	3	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731184354	2	47695118	TTATTTAAAAAATTTTAAATTA	T	638	PASS	MSH2	CCDS1834.1	r.?	-	-	Del	intronic	D	47695118	47695149	21	140	1175.7	-	-	1	1	1	MSH2|CCDS1834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSH2|CCDS1834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	9	13	9	13	16	31	16	31	9	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731187053	2	58167749	AG	A	540	PASS	-	-	-	-	-	Del	-	D	58167749	58167752	1	24	479.766	-	-	2	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	2	7	12	17	29	41	29	41	12	17	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731189956	2	69513805	CATAAAT	C	377	PASS	-	-	-	-	-	Del	-	D	69513805	69513816	6	44	693.53	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	10	3	12	20	34	20	34	3	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731191559	2	76644305	AAATCCCCTCACACATTTTGCTGGTG	A	493	PASS	-	-	-	-	-	Del	-	D	76644305	76644331	25	84	907.294	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	6	11	6	8	26	30	26	33	6	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731197516	2	98901825	C	CT	780	PASS	VWA3B	CCDS42718.1	r.?	-	-	Ins	intronic	I	98901825	98901832	1	44	686.907	-	-	6	1	1	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	3	10	7	13	24	35	24	35	7	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731200352	2	109534057	C	CA	1200	PASS	EDAR	CCDS2081.1	r.?	-	-	Ins	intronic	I	109534057	109534059	1	120	1048.95	-	-	1	1	1	EDAR|CCDS2081.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDAR|CCDS2081.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	10	24	10	0	0	./.	9	11	10	15	29	50	29	51	10	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731206015	2	129821265	TA	T	689	PASS	-	-	-	-	-	Del	-	D	129821265	129821274	1	45	638.885	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	8	8	21	20	54	20	54	8	21	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731206033	2	129908512	CA	C	360	PASS	-	-	-	-	-	Del	-	D	129908512	129908522	1	16	320.647	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	3	4	4	45	37	45	37	4	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731207523	2	133149983	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	133149983	133149987	2	6	263.593	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	5	0	6	0	43	29	43	29	6	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731207872	2	134667499	G	GTA	720	PASS	-	-	-	-	-	Ins	-	I	134667499	134667518	2	48	624.435	-	-	9	1	-	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	7	5	10	11	53	61	55	62	11	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731209125	2	139966138	A	ATG	795	PASS	-	-	-	-	-	Ins	-	I	139966138	139966150	2	42	780.544	-	-	5	1	-	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	13	2	17	6	54	30	54	30	17	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731209564	2	141320523	TA	T	877	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141320523	141320531	1	70	800.412	-	-	7	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	9	6	14	12	33	33	33	33	14	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731213594	2	155043497	CA	C	447	PASS	GALNT13	CCDS2199.1	r.?	-	-	Del	intronic	D	155043497	155043507	1	28	480.97	-	-	9	1	1	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	3	6	6	7	24	32	24	32	6	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731216905	2	167615883	GGAAA	G	1072	PASS	-	-	-	-	-	Del	-	D	167615883	167615890	4	112	1068.22	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	13	7	13	8	39	24	39	24	13	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731217437	2	169926651	TTGTC	T	1229	PASS	DHRS9	CCDS2231.1	r.627_630delUGUC	c.?	p.?	Del	5'UTR variant	D	169926651	169926660	4	130	1122.26	-	-	2	1	1	DHRS9|CCDS2231.1|r.627_630delUGUC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	DHRS9|CCDS2231.1|r.627_630delUGUC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	9	22	9	22	0	0	./.	12	9	19	11	49	35	49	35	19	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731217774	2	170787962	T	TA	763	PASS	UBR3	CCDS2238.2	r.?	-	-	Ins	intronic	I	170787962	170787964	1	77	845.424	-	-	1	1	1	UBR3|CCDS2238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBR3|CCDS2238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	10	10	13	24	23	24	24	10	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731226222	2	200426583	G	GCTCT	302	PASS	-	-	-	-	-	Ins	-	I	200426583	200426586	4	12	561.361	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	11	0	12	0	54	30	57	30	15	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731226867	2	202775673	C	CA	757	PASS	-	-	-	-	-	Ins	-	I	202775673	202775683	1	54	686.907	-	-	9	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	8	5	14	9	36	36	37	36	14	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731228940	2	209823266	A	AT	685	PASS	-	-	-	-	-	Ins	-	I	209823266	209823276	1	55	737.94	-	-	9	1	1	-	-	./.	0	0	0	0	14	2	14	2	0	0	./.	4	10	9	13	43	49	44	49	9	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731231479	2	218476694	ATAT	A	987	PASS	-	-	-	-	-	Del	-	D	218476694	218476699	3	99	961.94	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	10	8	12	8	45	33	45	33	12	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731235457	2	231330038	TG	T	958	PASS	SP100	CCDS2477.1	r.?	-	-	Del	intronic	D	231330038	231330042	1	88	906.09	-	-	3	1	1	SP100|CCDS2477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP100|CCDS2477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	7	10	11	13	26	36	26	36	11	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731241696	20	9809493	TTC	T	660	PASS	PAK7	CCDS13107.1	r.?	-	-	Del	intronic	D	9809493	9809499	2	36	592.459	-	-	2	1	1	PAK7|CCDS13107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAK7|CCDS13107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	8	10	14	32	45	32	45	10	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731248387	20	31033219	ACTG	A	989	PASS	C20orf112	CCDS13202.1	r.3631_3633delCAG	c.?	p.?	Del	3'UTR variant	D	31033219	31033223	3	90	916.603	-	-	1	1	1	C20orf112|CCDS13202.1|r.3631_3633delCAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C20orf112|CCDS13202.1|r.3631_3633delCAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	7	21	7	21	0	0	./.	8	9	11	17	29	46	29	46	11	17	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731253110	20	48791746	C	CCT	267	PASS	-	-	-	-	-	Ins	-	I	48791746	48791747	2	15	302.47	-	-	0	1	-	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	2	4	0	0	27	42	27	42	2	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731256190	20	59466402	TTG	T	435	PASS	-	-	-	-	-	Del	-	D	59466402	59466422	2	16	430.387	-	-	9	1	-	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	7	3	0	42	38	42	38	3	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731257311	21	9445169	GA	G	326	PASS	-	-	-	-	-	Del	-	D	9445169	9445177	1	12	595.283	-	-	7	1	1	-	-	./.	0	0	0	0	56	43	56	43	0	0	./.	11	0	13	0	214	171	214	171	13	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731258359	21	9885799	TC	T	424	PASS	-	-	-	-	-	Del	-	D	9885799	9885804	1	13	647.594	-	-	4	1	1	-	-	./.	0	0	0	0	42	46	42	46	0	0	./.	0	12	0	15	72	186	72	186	0	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731258576	21	9949052	AGT	A	298	PASS	ENSG00000227328	ENST00000416067	r.?	-	-	Del	intronic	D	9949052	9949055	2	9	430.525	-	-	1	1	1	ENSG00000227328|ENST00000416067|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227328|ENST00000416067|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	32	20	32	0	0	./.	8	0	18	0	84	56	84	56	18	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731260279	21	10961152	TC	T	545	PASS	TPTE	CCDS33512.1	r.?	-	-	Del	intronic	D	10961152	10961159	1	36	540.564	-	-	6	1	1	TPTE|CCDS33512.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPTE|CCDS33512.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	22	23	22	0	0	./.	5	5	11	8	77	75	77	75	11	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731262653	21	18299865	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	18299865	18299874	1	80	856.233	-	-	8	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	7	9	12	11	45	41	45	41	12	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731265077	21	24670652	AG	A	300	PASS	-	-	-	-	-	Del	-	D	24670652	24670654	1	6	266.971	-	-	1	1	1	-	-	./.	0	0	0	0	2	8	2	8	0	0	./.	5	0	19	0	52	22	52	22	19	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731265819	21	26712068	AAAAC	A	1140	PASS	-	-	-	-	-	Del	-	D	26712068	26712084	4	104	1027.01	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	7	12	14	15	47	33	47	33	14	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731266739	21	29097082	CTTTTTCCTA	C	522	PASS	-	-	-	-	-	Del	-	D	29097082	29097095	9	84	972.896	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	13	7	15	24	38	24	38	7	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731267071	21	30221681	C	CA	298	PASS	-	-	-	-	-	Ins	-	I	30221681	30221691	1	12	318.679	-	-	9	1	1	-	-	./.	0	0	0	0	21	8	21	8	0	0	./.	1	5	2	10	30	34	30	34	2	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731270367	21	40477683	AC	A	269	PASS	-	-	-	-	-	Del	-	D	40477683	40477685	1	6	261.552	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	5	0	7	0	56	18	56	18	7	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731270522	21	40867580	A	AT	1440	PASS	SH3BGR	CCDS13666.1	r.?	-	-	Ins	intronic	I	40867580	40867590	1	168	1281.34	-	-	9	1	1	SH3BGR|CCDS13666.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3BGR|CCDS13666.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	11	13	18	20	55	55	56	55	18	20	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731276717	22	25972463	AT	A	1108	PASS	ADRBK2	CCDS13832.1	r.?	-	-	Del	intronic	D	25972463	25972465	1	156	1244.06	-	-	1	1	1	ADRBK2|CCDS13832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADRBK2|CCDS13832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	11	12	14	14	35	27	35	27	14	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731277031	22	26946017	C	CCA	389	PASS	TPST2	CCDS13839.1	r.?	-	-	Ins	intronic	I	26946017	26946018	2	8	348.421	-	-	0	1	1	TPST2|CCDS13839.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TPST2|CCDS13839.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	0	7	1	0	30	28	30	28	1	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731284935	3	627799	CT	C	334	PASS	-	-	-	-	-	Del	-	D	627799	627806	1	24	428.248	-	-	6	1	1	-	-	./.	0	0	0	0	22	24	22	24	0	0	./.	5	3	7	3	73	48	73	48	7	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731287885	3	9296641	G	GGAAAGAAAGGGGAAAGAAAAAGA	300	PASS	-	-	-	-	-	Ins	-	I	9296641	9296642	23	12	198.418	-	-	0	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	0	0	42	24	43	24	3	2	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731290436	3	18149431	T	TA	540	PASS	AC139618.1	ENST00000448265	r.?	-	-	Ins	intronic	I	18149431	18149439	1	30	475.156	-	-	7	1	1	AC139618.1|ENST00000448265|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC139618.1|ENST00000448265|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	4	7	5	23	16	23	16	7	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731291421	3	21949614	C	CTATATATCTTTCTCTCTA	480	PASS	-	-	-	-	-	Ins	-	I	21949614	21949618	18	16	341.551	-	-	0	1	-	-	-	./.	0	0	0	0	10	10	10	11	0	0	./.	1	7	0	0	20	42	20	42	1	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731291825	3	23422303	A	AT	1380	PASS	UBE2E2	CCDS2637.1	r.?	-	-	Ins	intronic	I	23422303	23422313	1	156	1213.15	-	-	9	1	1	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	12	11	18	12	40	32	40	32	18	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731297092	3	43004900	TTATGTATATGTATCTATTTACATATGTATATGTAAATAGATACATATACATAATA	T	319	PASS	-	-	-	-	-	Del	-	D	43004900	43004969	55	36	582.82	-	-	1	1	-	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	8	3	0	0	53	49	56	50	8	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731301202	3	58009861	C	CT	840	PASS	FLNB	CCDS2885.1	r.?	-	-	Ins	intronic	I	58009861	58009863	1	63	740.403	-	-	1	1	1	FLNB|CCDS2885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FLNB|CCDS2885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	8	6	12	10	31	26	31	27	12	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731302334	3	61745045	TC	T	600	PASS	PTPRG	CCDS2895.1	r.?	-	-	Del	intronic	D	61745045	61745048	1	36	535.31	-	-	2	1	1	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	5	5	10	8	18	32	18	32	10	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731311253	3	93908507	G	GT	1380	PASS	-	-	-	-	-	Ins	-	I	93908507	93908515	1	126	1214.35	-	-	7	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	17	6	21	8	57	20	58	20	21	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731318074	3	117842040	TG	T	1080	PASS	-	-	-	-	-	Del	-	D	117842040	117842045	1	84	963.557	-	-	4	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	13	10	21	32	61	32	61	10	21	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731318215	3	118330340	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	118330340	118330349	1	28	476.36	-	-	8	1	1	-	-	./.	0	0	0	0	14	21	14	22	0	0	./.	6	3	13	11	48	39	48	40	13	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731318995	3	121012552	C	CA	540	PASS	STXBP5L	CCDS43137.1	r.?	-	-	Ins	intronic	I	121012552	121012559	1	30	475.758	-	-	6	1	1	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	4	15	6	31	32	31	32	15	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731324669	3	143571551	A	AT	960	PASS	SLC9A9	CCDS33872.1	r.?	-	-	Ins	upstream	I	143571551	143571559	1	81	841.444	-	-	7	1	1	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	21	9	21	9	0	0	./.	8	8	12	13	41	32	41	32	12	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731325721	3	148009649	GTTCT	G	418	PASS	-	-	-	-	-	Del	-	D	148009649	148009664	4	21	427.044	-	-	3	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	2	6	7	11	26	39	26	39	7	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731326774	3	151182413	GC	G	689	PASS	-	-	-	-	-	Del	-	D	151182413	151182416	1	48	642.372	-	-	2	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	7	5	13	5	40	30	40	30	13	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731326833	3	151298426	AAACT	A	538	PASS	-	-	-	-	-	Del	-	D	151298426	151298438	4	36	533.504	-	-	2	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	5	12	14	26	32	26	32	12	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731329099	3	160435744	AG	A	1109	PASS	-	-	-	-	-	Del	-	D	160435744	160435746	1	110	1002.64	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	9	10	13	13	38	32	38	32	13	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731331380	3	168508568	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	168508568	168508578	1	16	316.971	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	3	3	31	42	31	43	3	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731332908	3	173712566	GT	G	929	PASS	NLGN1	CCDS3222.1	r.?	-	-	Del	intronic	D	173712566	173712572	1	77	855.291	-	-	5	1	1	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	6	10	13	13	25	33	25	33	13	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731334796	3	180598007	G	GAT	689	PASS	FXR1	ENST00000465551	r.?	-	-	Ins	intronic	I	180598007	180598023	2	48	624.912	-	-	7	1	1	FXR1|ENST00000465551|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FXR1|ENST00000465551|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	14	7	0	0	./.	5	7	11	13	39	43	39	44	11	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731335775	3	184286680	TCC	T	298	PASS	EPHB3	CCDS3268.1	r.?	-	-	Del	intronic	D	184286680	184286684	2	12	319.38	-	-	3	1	-	EPHB3|CCDS3268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHB3|CCDS3268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	1	5	2	9	11	26	11	26	2	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731335831	3	184399500	AAG	A	269	PASS	EIF2B5	ENST00000444495	r.?	-	-	Del	intronic	D	184399500	184399504	2	6	267.655	-	-	1	1	-	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	16	3	16	0	0	./.	5	0	18	0	41	22	41	22	18	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731335954	3	184959262	A	AT	1048	PASS	EHHADH	CCDS33901.1	r.?	-	-	Ins	intronic	I	184959262	184959269	1	99	952.721	-	-	6	1	1	EHHADH|CCDS33901.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EHHADH|CCDS33901.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	13	17	0	0	./.	10	8	14	10	48	38	49	38	14	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731345182	4	16474116	GA	G	929	PASS	-	-	-	-	-	Del	-	D	16474116	16474119	1	56	853.382	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	13	3	23	4	53	17	53	17	23	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731349510	4	31397933	AAAATGTTCTCTT	A	522	PASS	-	-	-	-	-	Del	-	D	31397933	31397947	12	75	963.442	-	-	1	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	4	14	4	14	18	49	19	50	5	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731350481	4	35098707	GTGTT	G	898	PASS	-	-	-	-	-	Del	-	D	35098707	35098715	4	80	855.188	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	7	9	12	11	35	30	35	30	12	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731352475	4	40853119	C	CA	509	PASS	APBB2	CCDS3837.1	r.?	-	-	Ins	intronic	I	40853119	40853128	1	30	476.302	-	-	8	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	19	0	0	./.	4	5	13	10	38	26	38	32	13	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731352786	4	41813842	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	41813842	41813849	1	12	310.31	-	-	6	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	1	5	0	1	23	35	23	39	1	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731354335	4	47826343	AAT	A	300	PASS	CORIN	CCDS3477.1	r.?	-	-	Del	intronic	D	47826343	47826347	2	6	265.214	-	-	1	1	1	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	5	0	6	0	19	38	19	38	6	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731354375	4	47928736	T	TAAC	867	PASS	-	-	-	-	-	Ins	-	I	47928736	47928741	3	65	824.483	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	15	9	0	0	./.	4	12	4	13	22	45	22	45	4	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731366528	4	88133612	GTCCCAGCTACTCAGGGGACTGAGGTAGGAGGATCA	G	348	PASS	KLHL8	CCDS3617.1	r.?	-	-	Del	intronic	D	88133612	88133650	35	45	641.692	-	-	1	1	1	KLHL8|CCDS3617.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KLHL8|CCDS3617.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	8	4	5	2	28	24	31	26	8	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731367799	4	93241635	C	CT	540	PASS	GRID2	CCDS3637.1	r.?	-	-	Ins	intronic	I	93241635	93241644	1	28	475.7	-	-	8	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	3	6	9	12	38	38	39	38	9	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731377286	4	128448751	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	128448751	128448760	1	44	686.186	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	10	10	14	30	35	30	35	10	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731379916	4	137251368	AG	A	300	PASS	-	-	-	-	-	Del	-	D	137251368	137251370	1	6	259.796	-	-	1	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	0	17	0	62	25	62	25	17	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731381855	4	144177219	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	144177219	144177228	1	50	687.992	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	9	4	12	8	44	31	44	31	12	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731387380	4	162782648	GGGAA	G	300	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162782648	162782659	4	10	267.623	-	-	2	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	7	5	31	39	31	39	7	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731392426	4	177822257	T	TTA	809	PASS	-	-	-	-	-	Ins	-	I	177822257	177822261	2	39	725.863	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	12	6	14	21	43	21	43	6	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731398309	4	190845878	T	TA	289	PASS	-	-	-	-	-	Ins	-	I	190845878	190845885	1	24	476.302	-	-	6	1	1	-	-	./.	0	0	0	0	25	20	25	20	0	0	./.	2	7	5	7	104	85	104	85	5	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731401284	5	8047273	T	TG	685	PASS	-	-	-	-	-	Ins	-	I	8047273	8047276	1	64	739.924	-	-	2	1	1	-	-	./.	0	0	0	0	17	13	18	13	0	0	./.	7	7	10	10	43	22	43	22	10	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731401297	5	8069345	CAATT	C	1196	PASS	-	-	-	-	-	Del	-	D	8069345	8069353	4	143	1178.82	-	-	1	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	10	12	14	16	34	37	34	37	14	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731406520	5	24348924	T	TTC	658	PASS	-	-	-	-	-	Ins	-	I	24348924	24348926	2	45	623.126	-	-	0	1	-	-	-	./.	0	0	0	0	14	14	14	15	0	0	./.	4	8	6	10	15	42	15	42	6	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731408414	5	29653200	A	ATG	540	PASS	-	-	-	-	-	Ins	-	I	29653200	29653214	2	24	471.408	-	-	6	1	-	-	-	./.	0	0	0	0	27	10	27	10	0	0	./.	2	7	6	8	30	47	30	47	6	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731411903	5	41283242	C	CT	1109	PASS	-	-	-	-	-	Ins	-	I	41283242	41283252	1	108	998.205	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	8	11	12	15	39	47	39	47	12	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731413188	5	49917997	A	AACT	261	PASS	-	-	-	-	-	Ins	-	I	49917997	49918001	3	10	465.99	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	9	0	8	0	72	25	73	25	9	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731419135	5	72920657	T	TA	658	PASS	ENSG00000214944	CCDS47231.1	r.?	-	-	Ins	upstream	I	72920657	72920658	1	49	608.074	-	-	0	1	-	ENSG00000214944|CCDS47231.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000214944|CCDS47231.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	6	3	7	3	0	0	./.	6	6	10	9	35	30	35	30	10	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731420757	5	78799562	AAG	A	360	PASS	HOMER1	CCDS43335.1	r.?	-	-	Del	intronic	D	78799562	78799566	2	7	319.089	-	-	1	1	-	HOMER1|CCDS43335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HOMER1|CCDS43335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	0	7	0	49	18	49	18	7	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731422413	5	84486918	GC	G	1440	PASS	-	-	-	-	-	Del	-	D	84486918	84486920	1	168	1284.18	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	11	13	19	21	40	51	40	51	19	21	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731424652	5	94728896	ACTTTAT	A	435	PASS	FAM81B	CCDS43341.1	r.?	-	-	Del	intronic	D	94728896	94728911	6	70	803.14	-	-	2	1	1	FAM81B|CCDS43341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM81B|CCDS43341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	6	9	7	9	30	30	31	30	8	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731425165	5	96612329	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	96612329	96612333	2	12	260.087	-	-	1	1	-	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	4	4	21	40	21	40	4	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731426607	5	101291639	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	101291639	101291647	1	30	580.982	-	-	7	1	1	-	-	./.	0	0	0	0	10	27	10	27	0	0	./.	9	2	14	8	40	31	40	32	14	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731427944	5	105743468	G	GTA	660	PASS	-	-	-	-	-	Ins	-	I	105743468	105743478	2	42	573.757	-	-	4	1	-	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	6	9	12	43	44	43	44	9	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731428968	5	110156394	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	110156394	110156403	1	28	476.827	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	3	12	4	33	36	33	37	12	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731433463	5	126398533	C	CT	509	PASS	-	-	-	-	-	Ins	-	I	126398533	126398540	1	30	476.827	-	-	6	1	1	-	-	./.	0	0	0	0	17	8	18	8	0	0	./.	5	4	6	4	27	29	27	30	6	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731433783	5	128304732	G	GT	441	PASS	SLC27A6	CCDS4145.1	r.?	-	-	Ins	intronic	I	128304732	128304738	1	56	687.546	-	-	5	1	1	SLC27A6|CCDS4145.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC27A6|CCDS4145.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	7	11	8	50	28	51	30	12	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731439071	5	151448070	CT	C	1080	PASS	-	-	-	-	-	Del	-	D	151448070	151448074	1	91	963.286	-	-	3	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	12	7	15	29	35	29	35	7	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731445326	5	172742497	TAATA	T	536	PASS	STC2	CCDS4388.1	r.4568_4571delUAUU	c.?	p.?	Del	3'UTR variant	D	172742497	172742506	4	40	588.207	-	-	2	1	1	STC2|CCDS4388.1|r.4568_4571delUAUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	STC2|CCDS4388.1|r.4568_4571delUAUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	8	13	8	0	0	./.	7	4	12	7	32	24	32	24	12	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731467563	6	57283361	AT	A	334	PASS	PRIM2	ENST00000425433	r.?	-	-	Del	intronic	D	57283361	57283371	1	15	320.901	-	-	9	1	1	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	4	2	5	3	81	62	81	62	5	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731469115	6	62263953	AT	A	809	PASS	-	-	-	-	-	Del	-	D	62263953	62263955	1	60	750.174	-	-	1	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	9	10	11	24	40	24	40	10	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731471370	6	69407321	T	TA	997	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	69407321	69407330	1	60	900.69	-	-	8	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	14	5	16	16	54	16	55	5	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731471854	6	70994354	C	CA	449	PASS	COL9A1	CCDS4971.1	r.?	-	-	Ins	intronic	I	70994354	70994363	1	21	420.844	-	-	8	1	1	COL9A1|CCDS4971.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL9A1|CCDS4971.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	6	4	11	27	38	27	38	4	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731472060	6	71762381	AG	A	300	PASS	-	-	-	-	-	Del	-	D	71762381	71762383	1	6	257.082	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	5	0	5	0	39	22	39	22	5	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731472771	6	74293238	TC	T	360	PASS	-	-	-	-	-	Del	-	D	74293238	74293240	1	7	303.441	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	6	0	12	0	43	28	43	28	12	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731473848	6	77876802	TTTA	T	834	PASS	-	-	-	-	-	Del	-	D	77876802	77876816	3	55	749.572	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	10	4	13	17	29	17	29	4	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731480534	6	102836508	TGAAGAAATCA	T	754	PASS	-	-	-	-	-	Del	-	D	102836508	102836519	10	195	1393.18	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	14	12	16	13	37	42	37	42	16	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731481669	6	106709571	G	GTA	689	PASS	ATG5	CCDS5055.1	r.?	-	-	Ins	intronic	I	106709571	106709575	2	49	627.955	-	-	1	1	1	ATG5|CCDS5055.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG5|CCDS5055.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	6	6	11	9	31	26	31	26	11	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731483336	6	111950096	TTG	T	960	PASS	-	-	-	-	-	Del	-	D	111950096	111950102	2	65	856.739	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	12	4	18	5	47	20	47	20	18	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731484194	6	115036306	C	CTCTGACTTTCAGCCTA	261	PASS	-	-	-	-	-	Ins	-	I	115036306	115036326	16	28	395.558	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	6	3	1	3	18	31	24	31	6	3	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731486458	6	122867982	ATAAGAG	A	667	PASS	SERINC1	CCDS5125.1	r.?	-	-	Del	intronic	D	122867982	122867995	6	150	1232.43	-	-	2	1	1	SERINC1|CCDS5125.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SERINC1|CCDS5125.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	4	18	4	0	0	./.	9	14	9	22	33	55	33	55	9	22	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731486612	6	123320475	A	AT	1529	PASS	CLVS2	CCDS34525.1	r.?	-	-	Ins	intronic	I	123320475	123320482	1	147	1375.12	-	-	6	1	1	CLVS2|CCDS34525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLVS2|CCDS34525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	20	6	28	10	57	38	57	39	28	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731487426	6	127469642	TA	T	989	PASS	RSPO3	CCDS5135.1	r.?	-	-	Del	intronic	D	127469642	127469650	1	90	908.517	-	-	7	1	1	RSPO3|CCDS5135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSPO3|CCDS5135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	2	13	2	0	0	./.	8	9	10	13	23	42	23	42	10	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731491292	6	143011683	AC	A	486	PASS	-	-	-	-	-	Del	-	D	143011683	143011685	1	30	482.255	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	5	8	10	30	32	30	32	8	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731498762	6	169498328	C	CA	749	PASS	-	-	-	-	-	Ins	-	I	169498328	169498336	1	54	688.763	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	20	0	0	./.	5	8	9	11	29	23	30	23	9	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731501379	7	6522170	GT	G	1031	PASS	KDELR2	CCDS5351.1	r.?	-	-	Del	intronic	D	6522170	6522175	1	100	957.151	-	-	4	1	1	KDELR2|CCDS5351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDELR2|CCDS5351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	9	9	10	14	32	39	32	39	10	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731501802	7	7773615	A	AT	1018	PASS	ENSG00000219545	ENST00000433511	r.?	-	-	Ins	intronic	I	7773615	7773623	1	96	954.141	-	-	7	1	1	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	7	11	15	15	26	35	27	36	15	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731501803	7	7783128	AT	A	1237	PASS	ENSG00000219545	ENST00000433511	r.?	-	-	Del	intronic	D	7783128	7783136	1	126	1125.21	-	-	7	1	1	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	10	2	10	0	0	./.	8	13	11	13	45	32	45	32	11	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731506584	7	23542991	TTC	T	720	PASS	TRA2A	CCDS5383.1	r.?	-	-	Del	downstream	D	23542991	23542995	2	13	641.512	-	-	1	1	1	TRA2A|CCDS5383.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TRA2A|CCDS5383.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	19	12	19	12	0	0	./.	0	12	4	18	29	49	29	49	4	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731514213	7	49909840	C	CA	331	PASS	VWC2	CCDS5508.1	r.?	-	-	Ins	intronic	I	49909840	49909847	1	48	633.686	-	-	6	1	1	VWC2|CCDS5508.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VWC2|CCDS5508.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	7	5	10	12	36	40	36	40	10	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731515216	7	52951742	GGAGA	G	838	PASS	-	-	-	-	-	Del	-	D	52951742	52951750	4	70	804.148	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	9	6	12	8	31	31	31	31	12	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731515493	7	53688845	GAATGATTT	G	348	PASS	-	-	-	-	-	Del	-	D	53688845	53688856	8	49	642.717	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	6	9	7	48	26	48	26	9	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731517370	7	57856216	T	TA	1093	PASS	-	-	-	-	-	Ins	-	I	57856216	57856226	1	104	1003.54	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	12	7	23	9	52	38	52	38	23	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731517864	7	61787544	TAATCGAATGAAATCATCACTG	T	329	PASS	-	-	-	-	-	Del	-	D	61787544	61787569	21	26	696.928	-	-	1	1	1	-	-	./.	0	0	0	0	33	46	33	46	0	0	./.	1	12	0	0	123	194	123	197	1	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731521194	7	69261524	AG	A	300	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69261524	69261526	1	6	266.845	-	-	1	1	-	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	0	7	0	36	25	36	25	7	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731521214	7	69349227	GA	G	1258	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69349227	69349229	1	143	1177.01	-	-	1	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	12	10	17	14	34	39	34	39	17	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731521876	7	71342644	TAA	T	1169	PASS	CALN1	CCDS47603.1	r.?	-	-	Del	intronic	D	71342644	71342650	2	112	1071.6	-	-	5	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	7	13	11	20	32	59	32	59	11	20	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731522761	7	74080881	A	AT	1140	PASS	GTF2I	CCDS5573.1	r.?	-	-	Ins	intronic	I	74080881	74080890	1	110	999.322	-	-	8	1	1	GTF2I|CCDS5573.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GTF2I|CCDS5573.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	17	7	0	0	./.	9	10	14	11	37	39	37	39	14	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731522858	7	75214184	TG	T	300	PASS	HIP1	CCDS34669.1	r.?	-	-	Del	intronic	D	75214184	75214186	1	6	256.008	-	-	1	1	1	HIP1|CCDS34669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HIP1|CCDS34669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	22	9	22	0	0	./.	5	0	6	0	31	24	31	24	6	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731524851	7	81264976	TTTC	T	1440	PASS	-	-	-	-	-	Del	-	D	81264976	81264986	3	144	1286.64	-	-	3	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	7	17	8	18	37	53	37	53	8	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731532782	7	108257964	GACTTGCAGAATTTGCATTTGAATTATCTAT	G	452	PASS	-	-	-	-	-	Del	-	D	108257964	108257999	30	80	854.146	-	-	1	1	1	-	-	./.	0	0	0	0	21	8	21	8	0	0	./.	7	9	5	4	27	40	29	44	7	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731539347	7	132277624	AT	A	689	PASS	PLXNA4	CCDS43646.1	r.?	-	-	Del	intronic	D	132277624	132277628	1	45	642.115	-	-	3	1	1	PLXNA4|CCDS43646.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLXNA4|CCDS43646.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	8	4	14	6	49	31	49	31	14	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731539786	7	133855900	TC	T	300	PASS	LRGUK	CCDS5830.1	r.?	-	-	Del	intronic	D	133855900	133855902	1	6	261.427	-	-	1	1	1	LRGUK|CCDS5830.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRGUK|CCDS5830.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	5	0	9	0	77	30	77	30	9	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731540538	7	136404590	TAC	T	420	PASS	-	-	-	-	-	Del	-	D	136404590	136404601	2	8	374.667	-	-	5	1	-	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	7	0	13	4	42	18	42	18	13	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731544529	7	150375253	CTTCT	C	485	PASS	-	-	-	-	-	Del	-	D	150375253	150375270	4	30	482.489	-	-	4	1	-	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	4	5	7	37	34	37	34	5	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731547184	7	157711062	ACAT	A	509	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	157711062	157711070	3	18	481.285	-	-	2	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	1	8	5	11	23	34	23	34	5	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731549252	8	4505809	GT	G	720	PASS	-	-	-	-	-	Del	-	D	4505809	4505816	1	48	641.7	-	-	6	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	7	5	14	8	48	45	48	45	14	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731553358	8	16032288	C	CT	1020	PASS	MSR1	CCDS5995.1	r.?	-	-	Ins	intronic	I	16032288	16032298	1	84	898.038	-	-	9	1	1	MSR1|CCDS5995.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSR1|CCDS5995.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	6	11	16	13	49	59	49	59	16	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731556995	8	26856595	C	CA	1080	PASS	-	-	-	-	-	Ins	-	I	26856595	26856601	1	84	945.693	-	-	5	1	1	-	-	./.	0	0	0	0	10	9	10	10	0	0	./.	5	13	11	18	42	35	42	35	11	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731557348	8	27941662	TA	T	337	PASS	C8orf80	CCDS47833.1	r.?	-	-	Del	upstream	D	27941662	27941668	1	7	314.83	-	-	5	1	1	C8orf80|CCDS47833.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C8orf80|CCDS47833.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	10	11	10	0	0	./.	0	6	0	6	26	30	26	30	0	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731559058	8	33546434	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	33546434	33546444	1	63	740.021	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	8	6	13	12	36	36	36	37	13	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731559283	8	34636604	T	TTA	329	PASS	-	-	-	-	-	Ins	-	I	34636604	34636620	2	15	314.83	-	-	7	1	-	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	4	10	12	36	51	36	52	10	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731562649	8	51364846	C	CA	1049	PASS	SNTG1	CCDS6147.1	r.?	-	-	Ins	intronic	I	51364846	51364854	1	75	955.326	-	-	7	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	4	14	8	16	25	38	26	38	8	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731564115	8	57335029	T	TA	397	PASS	-	-	-	-	-	Ins	-	I	57335029	57335038	1	18	371.516	-	-	8	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	2	5	4	6	26	25	26	26	4	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731567285	8	71498671	TAA	T	567	PASS	TRAM1	CCDS6207.1	r.?	-	-	Del	intronic	D	71498671	71498679	2	40	590.433	-	-	7	1	1	TRAM1|CCDS6207.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAM1|CCDS6207.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	7	4	8	7	40	26	40	26	8	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731567414	8	71918982	T	TA	929	PASS	-	-	-	-	-	Ins	-	I	71918982	71918990	1	80	849.179	-	-	7	1	1	-	-	./.	0	0	0	0	23	14	23	15	0	0	./.	7	9	8	11	28	33	29	33	8	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731570010	8	82617060	G	GA	1289	PASS	ZFAND1	CCDS6232.1	r.?	-	-	Ins	intronic	I	82617060	82617067	1	135	1166.42	-	-	6	1	1	ZFAND1|CCDS6232.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFAND1|CCDS6232.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	8	14	13	16	35	46	35	46	13	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731571885	8	90379107	T	TA	1078	PASS	-	-	-	-	-	Ins	-	I	90379107	90379114	1	104	1008.4	-	-	6	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	7	12	12	15	40	39	40	40	12	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731574479	8	100110856	ACTC	A	1167	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100110856	100110862	3	126	1125.99	-	-	1	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	13	8	22	12	41	44	41	44	22	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731575634	8	104782804	C	CA	540	PASS	RIMS2	ENST00000504942	r.?	-	-	Ins	intronic	I	104782804	104782814	1	30	477.061	-	-	9	1	1	RIMS2|ENST00000504942|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIMS2|ENST00000504942|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	5	6	6	26	25	26	25	6	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731576560	8	108475226	ATACTGTGT	A	638	PASS	ANGPT1	CCDS6306.1	r.?	-	-	Del	intronic	D	108475226	108475235	8	108	1178.46	-	-	1	1	1	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	17	5	23	5	51	19	51	19	23	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731577337	8	110966274	TG	T	780	PASS	-	-	-	-	-	Del	-	D	110966274	110966279	1	56	697.784	-	-	4	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	7	12	11	21	39	21	39	12	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731577607	8	112104058	A	AC	540	PASS	-	-	-	-	-	Ins	-	I	112104058	112104059	1	30	456.591	-	-	0	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	4	12	5	44	22	45	22	12	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731578009	8	113566109	AGTTTTAT	A	348	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	113566109	113566119	7	48	644.109	-	-	1	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	7	8	10	24	27	24	27	8	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731581676	8	126790598	AG	A	660	PASS	-	-	-	-	-	Del	-	D	126790598	126790600	1	36	590.433	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	8	7	14	26	53	26	53	7	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731581988	8	127864723	GA	G	840	PASS	-	-	-	-	-	Del	-	D	127864723	127864725	1	60	744.235	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	9	6	9	21	32	21	32	6	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731582959	8	131525754	AC	A	300	PASS	-	-	-	-	-	Del	-	D	131525754	131525756	1	6	249.113	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	5	0	10	0	24	33	24	33	10	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731583977	8	135767564	G	GA	298	PASS	-	-	-	-	-	Ins	-	I	135767564	135767566	1	16	316.636	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	7	12	20	32	20	33	7	12	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731585290	8	140386525	ACCT	A	509	PASS	-	-	-	-	-	Del	-	D	140386525	140386532	3	28	483.081	-	-	2	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	3	8	5	29	28	29	28	8	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731586718	8	145825483	ACTTGTGTAC	A	348	PASS	ENSG00000147799	CCDS34971.1	r.?	-	-	Del	intronic	D	145825483	145825495	9	49	642.905	-	-	1	1	-	ENSG00000147799|CCDS34971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000147799|CCDS34971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	6	6	6	6	27	22	27	22	7	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731591353	9	15627667	TG	T	1072	PASS	C9orf93	CCDS6481.1	r.?	-	-	Del	intronic	D	15627667	15627669	1	99	966.966	-	-	1	1	1	C9orf93|CCDS6481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf93|CCDS6481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	10	8	13	9	37	35	37	35	13	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731593289	9	22580148	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	22580148	22580156	1	56	684.952	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	7	6	10	11	24	30	26	30	10	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731597806	9	37212023	CAAAAAAAAAAAAAAAAAAAAA	C	261	PASS	ZCCHC7	CCDS6608.2	r.?	-	-	Del	intronic	D	37212023	37212063	21	30	471.743	-	-	1	1	-	ZCCHC7|CCDS6608.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC7|CCDS6608.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	8	3	8	0	0	./.	5	4	4	4	34	10	35	10	5	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731603992	9	74938189	CT	C	840	PASS	-	-	-	-	-	Del	-	D	74938189	74938193	1	60	745.93	-	-	3	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	9	7	10	27	27	27	27	7	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731610078	9	98042862	C	CA	898	PASS	FANCC	CCDS35071.1	r.?	-	-	Ins	intronic	I	98042862	98042870	1	77	849.224	-	-	7	1	1	FANCC|CCDS35071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FANCC|CCDS35071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	6	10	10	15	32	52	32	52	10	15	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731611348	9	103641906	CAATCAAGACTAACTAATTTTTTCAGAAAACCTTCA	C	348	PASS	-	-	-	-	-	Del	-	D	103641906	103641943	35	13	645.045	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	12	0	8	0	33	20	37	20	12	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731618214	9	126895896	ATCTG	A	569	PASS	-	-	-	-	-	Del	-	D	126895896	126895905	4	36	536.936	-	-	2	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	5	6	6	42	27	42	27	6	6	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731619463	9	131155157	AT	A	697	PASS	URM1	CCDS48035.1	r.?	-	-	Del	downstream	D	131155157	131155159	1	24	638.423	-	-	1	1	1	URM1|CCDS48035.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MIR219-2|ENST00000385220|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	10	9	10	9	0	0	./.	11	1	16	5	29	14	29	14	16	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731621519	9	137488926	TG	T	1287	PASS	-	-	-	-	-	Del	-	D	137488926	137488930	1	150	1236.34	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	9	14	12	17	24	57	24	57	12	17	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731623488	X	6041052	TA	T	1529	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	6041052	6041062	1	180	1394.6	-	-	9	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	9	17	15	21	34	56	34	56	15	21	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731624528	X	10880380	G	GCTAC	836	PASS	-	-	-	-	-	Ins	-	I	10880380	10880385	4	65	820.424	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	12	4	14	4	46	47	47	47	14	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731625077	X	13672307	ATAAT	A	989	PASS	TCEANC	CCDS48081.1	r.?	-	-	Del	intronic	D	13672307	13672317	4	88	912.641	-	-	2	1	1	TCEANC|CCDS48081.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TCEANC|CCDS48081.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	7	10	10	13	29	35	29	35	10	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731625865	X	17272858	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	17272858	17272866	1	48	636.992	-	-	7	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	5	7	8	9	27	36	28	36	8	9	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731626187	X	19629443	G	GT	389	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Ins	intronic	I	19629443	19629452	1	20	371.579	-	-	8	1	-	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	3	4	11	7	32	25	32	25	11	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731626438	X	22216489	T	TA	720	PASS	PHEX	CCDS14204.1	r.?	-	-	Ins	intronic	I	22216489	22216491	1	24	634.584	-	-	1	1	1	PHEX|CCDS14204.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHEX|CCDS14204.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	11	1	14	4	30	20	30	20	14	4	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731627169	X	25158522	ATAT	A	1109	PASS	-	-	-	-	-	Del	-	D	25158522	25158530	3	104	1020.01	-	-	2	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	7	12	8	16	19	39	19	39	8	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731627783	X	28080144	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	28080144	28080153	1	70	899.998	-	-	8	1	1	-	-	./.	0	0	0	0	24	10	24	11	0	0	./.	13	4	21	13	57	47	57	47	21	13	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731629775	X	37876326	TTTG	T	577	PASS	SYTL5	CCDS14244.1	r.?	-	-	Del	intronic	D	37876326	37876350	3	32	536.848	-	-	7	1	-	SYTL5|CCDS14244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYTL5|CCDS14244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	7	8	11	29	37	29	37	8	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731630957	X	43492217	C	CT	1140	PASS	-	-	-	-	-	Ins	-	I	43492217	43492224	1	110	1008.57	-	-	6	1	1	-	-	./.	0	0	0	0	15	11	16	11	0	0	./.	10	9	12	11	18	31	18	31	12	11	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731632770	X	53799387	GC	G	336	PASS	-	-	-	-	-	Del	-	D	53799387	53799390	1	18	482.561	-	-	2	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	1	8	3	19	14	24	14	24	3	19	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731632937	X	54905042	A	AT	268	PASS	-	-	-	-	-	Ins	-	I	54905042	54905044	1	18	477.744	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	8	1	16	1	58	54	59	54	16	1	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731634876	X	68099227	AG	A	900	PASS	-	-	-	-	-	Del	-	D	68099227	68099232	1	72	803.465	-	-	4	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	8	7	11	10	28	26	28	26	11	10	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731637278	X	80887339	AT	A	1380	PASS	-	-	-	-	-	Del	-	D	80887339	80887349	1	156	1234.15	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	11	12	15	16	45	49	45	49	15	16	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731639412	X	90576751	CA	C	1172	PASS	-	-	-	-	-	Del	-	D	90576751	90576758	1	135	1179.26	-	-	6	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	8	14	13	18	35	39	35	39	14	18	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731640113	X	94305879	G	GA	277	PASS	-	-	-	-	-	Ins	-	I	94305879	94305886	1	6	264.209	-	-	6	1	-	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	0	5	1	0	26	17	26	17	1	5	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731642598	X	107770008	C	CT	300	PASS	COL4A5	CCDS35366.1	r.?	-	-	Ins	intronic	I	107770008	107770018	1	10	258.189	-	-	9	1	1	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	9	23	9	0	0	./.	4	1	7	2	29	12	29	12	7	2	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731644619	X	118569117	T	TA	476	PASS	SLC25A43	CCDS14577.1	r.?	-	-	Ins	intronic	I	118569117	118569125	1	35	530.827	-	-	7	1	1	SLC25A43|CCDS14577.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC25A43|CCDS14577.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	6	5	14	16	42	16	42	5	14	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731645033	X	120185866	C	CA	480	PASS	GLUD2	CCDS14603.1	r.?	-	-	Ins	downstream	I	120185866	120185876	1	24	420.447	-	-	9	1	1	GLUD2|CCDS14603.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GLUD2|CCDS14603.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	6	8	6	0	0	./.	3	5	6	8	31	34	32	34	6	8	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731645636	X	122983474	AG	A	300	PASS	-	-	-	-	-	Del	-	D	122983474	122983476	1	6	267.822	-	-	1	1	-	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	5	0	19	0	39	30	39	30	19	0	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731647034	X	128676913	GA	G	1020	PASS	OCRL	CCDS35393.1	r.?	-	-	Del	intronic	D	128676913	128676915	1	48	910.233	-	-	1	1	1	OCRL|CCDS35393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OCRL|CCDS35393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	15	2	18	7	39	25	39	25	18	7	1	1	1	1	1	1	1	1
2662811	PD11378a	PD11378b	2731652396	X	154872246	ATTC	A	1287	PASS	-	-	-	-	-	Del	-	D	154872246	154872255	3	156	1232.94	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	12	11	17	15	40	51	40	51	17	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726218525	1	58247551	T	TA	960	PASS	DAB1	CCDS607.1	r.?	-	-	Ins	intronic	I	58247551	58247553	1	80	850.271	-	-	1	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	7	9	10	12	29	34	29	34	10	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726221236	1	67331699	TAAGA	T	834	PASS	WDR78	CCDS635.1	r.?	-	-	Del	intronic	D	67331699	67331705	4	88	913.046	-	-	1	1	1	WDR78|CCDS635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR78|CCDS635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	10	7	15	8	33	28	34	28	16	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726227142	1	88315439	GT	G	900	PASS	-	-	-	-	-	Del	-	D	88315439	88315446	1	70	806.16	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	9	6	12	9	26	32	26	32	12	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726228030	1	91575350	GT	G	693	PASS	-	-	-	-	-	Del	-	D	91575350	91575355	1	78	913.046	-	-	4	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	5	12	11	16	37	30	37	30	11	16	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726239474	1	147097312	GA	G	720	PASS	BCL9	CCDS30833.1	r.5574delA	c.?	p.?	Del	3'UTR variant	D	147097312	147097318	1	45	644.928	-	-	5	1	1	BCL9|CCDS30833.1|r.5574delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	BCL9|CCDS30833.1|r.5574delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	12	6	12	0	0	./.	8	4	9	7	17	29	17	29	9	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726239484	1	147141526	TCCCTTCAGCCCTTCAGCTCTGACAAACC	T	290	PASS	ACP6	CCDS928.1	r.?	-	-	Del	intronic	D	147141526	147141555	28	35	536.838	-	-	1	1	1	ACP6|CCDS928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACP6|CCDS928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	4	3	2	22	26	25	28	6	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726243098	1	158734362	TA	T	420	PASS	OR6N1	CCDS30905.1	r.?	-	-	Del	downstream	D	158734362	158734365	1	14	376.208	-	-	2	1	1	OR6N1|CCDS30905.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR6N1|CCDS30905.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	18	13	18	0	0	./.	1	6	3	8	36	37	36	37	3	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726244150	1	162487138	A	AG	1080	PASS	UHMK1	CCDS1239.1	r.?	-	-	Ins	intronic	I	162487138	162487145	1	75	956.555	-	-	6	1	1	UHMK1|CCDS1239.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UHMK1|CCDS1239.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	27	12	27	0	0	./.	4	14	7	16	27	44	27	45	7	16	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726246258	1	170139959	TAGTGCTGC	T	261	PASS	METTL11B	CCDS44275.1	r.?	-	-	Del	downstream	D	170139959	170139972	8	28	483.696	-	-	1	1	1	METTL11B|CCDS44275.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	METTL11B|CCDS44275.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	19	18	19	0	0	./.	6	3	7	4	45	29	45	29	7	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726248123	1	177832394	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	177832394	177832403	1	10	265.108	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	12	0	0	./.	1	4	1	4	35	26	35	26	1	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726249601	1	182901603	A	ATTAT	509	PASS	C1orf14	CCDS30955.1	r.?	-	-	Ins	intronic	I	182901603	182901634	4	28	462.022	-	-	7	1	-	C1orf14|CCDS30955.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf14|CCDS30955.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	3	6	4	8	30	40	30	40	4	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726253471	1	196117053	ATATATTTTTTTTTTT	A	319	PASS	-	-	-	-	-	Del	-	D	196117053	196117070	15	42	578.541	-	-	1	1	-	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	6	5	7	3	17	27	17	29	7	5	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726257518	1	209217131	G	GA	1237	PASS	-	-	-	-	-	Ins	-	I	209217131	209217136	1	130	1115.98	-	-	4	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	9	12	12	13	28	31	28	31	12	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726259549	1	215385135	ATATATC	A	406	PASS	KCNK2	CCDS41467.1	r.?	-	-	Del	intronic	D	215385135	215385149	6	55	751.212	-	-	2	1	1	KCNK2|CCDS41467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNK2|CCDS41467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	10	4	12	6	29	26	31	26	14	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726267312	1	240483209	A	AT	1020	PASS	FMN2	CCDS31069.2	r.?	-	-	Ins	intronic	I	240483209	240483211	1	90	893.781	-	-	1	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	9	8	15	14	36	32	36	32	15	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726269636	1	246666782	T	TA	1102	PASS	SMYD3	CCDS31083.1	r.?	-	-	Ins	intronic	I	246666782	246666789	1	108	1009.7	-	-	6	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	8	11	12	13	32	43	32	43	12	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726276831	10	15786512	TCTC	T	780	PASS	-	-	-	-	-	Del	-	D	15786512	15786516	3	56	700.882	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	6	7	12	11	24	34	24	34	12	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726291710	10	65243466	AATGATATTGCTGCTGG	ATATC	667	PASS	-	-	-	-	-	Complex	-	DI	65243467	65243482	16	156	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	12	11	0	0	24	32	25	33	12	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726295855	10	77699728	CAAA	C	807	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	77699728	77699732	3	70	808.71	-	-	3	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	9	6	13	15	30	32	30	32	13	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726298550	10	87944149	CT	C	1020	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	87944149	87944152	1	90	916.538	-	-	2	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	9	8	13	12	32	32	32	32	13	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726305337	10	110325284	C	CGGGAAG	261	PASS	-	-	-	-	-	Ins	-	I	110325284	110325317	6	18	449.704	-	-	5	1	-	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	8	1	6	1	42	20	44	20	8	1	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726309831	10	124521160	CT	C	780	PASS	-	-	-	-	-	Del	-	D	124521160	124521162	1	44	700.882	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	10	6	15	27	36	27	36	6	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726312451	10	132788261	TG	T	960	PASS	-	-	-	-	-	Del	-	D	132788261	132788264	1	81	860.216	-	-	2	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	8	8	12	12	39	37	39	37	12	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726313824	11	1922377	T	TA	1200	PASS	-	-	-	-	-	Ins	-	I	1922377	1922386	1	121	1059.33	-	-	8	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	10	10	11	13	26	50	26	50	11	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726316425	11	9178458	GATATTCTTACTGTGAGAATTCCTGCAGAATAATAAATTCCTCCTATG	GGAAGATATTCTTACT	360	PASS	DENND5A	CCDS31423.1	r.?	-	-	Complex	intronic	DI	9178459	9178505	47	15	0	-	-	0	1	1	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	14	13	15	15	0	0	./.	2	4	0	0	27	25	28	25	2	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726325897	11	38008346	AAAGAAAGGAAAAGAAAAGAAAAG	A	263	PASS	-	-	-	-	-	Del	-	D	38008346	38008372	23	21	430.353	-	-	1	1	-	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	2	0	0	34	30	35	30	6	2	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726325908	11	38163230	T	TGG	300	PASS	-	-	-	-	-	Ins	-	I	38163230	38163239	2	12	260.467	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	0	1	21	24	21	24	3	2	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726329040	11	48068875	CAAGTA	C	418	PASS	PTPRJ	CCDS7945.1	r.?	-	-	Del	intronic	D	48068875	48068885	5	16	432.16	-	-	1	1	1	PTPRJ|CCDS7945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRJ|CCDS7945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	12	24	12	0	0	./.	7	1	8	3	38	19	38	19	8	3	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726332549	11	63528470	CGA	C	1200	PASS	C11orf95	CCDS44636.1	r.4474_4475delUC	c.?	p.?	Del	3'UTR variant	D	63528470	63528473	2	105	1077.99	-	-	1	1	1	C11orf95|CCDS44636.1|r.4474_4475delUC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C11orf95|CCDS44636.1|r.4474_4475delUC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	12	9	12	0	0	./.	6	14	6	17	17	32	17	32	6	17	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726332761	11	64047830	A	ATAAT	337	PASS	GPR137	CCDS8066.1	r.?	-	-	Ins	upstream	I	64047830	64047832	4	15	306.66	-	-	0	1	-	GPR137|CCDS8066.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	BAD|CCDS8065.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	4	2	4	4	57	44	57	44	6	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726334611	11	69468555	A	AT	569	PASS	CCND1	CCDS8191.1	r.3602_3603insu	c.?	p.?	Ins	3'UTR variant	I	69468555	69468557	1	35	534.179	-	-	1	1	-	CCND1|CCDS8191.1|r.3602_3603insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CCND1|CCDS8191.1|r.3602_3603insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	15	12	15	0	0	./.	4	6	4	9	62	56	62	56	4	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726337666	11	81671244	C	CT	1320	PASS	AP002802.1	ENST00000500502	r.?	-	-	Ins	intronic	I	81671244	81671248	1	140	1175.19	-	-	3	1	1	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	9	13	11	21	19	32	20	32	11	21	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726338345	11	84823873	GC	G	1200	PASS	DLG2	CCDS44690.1	r.?	-	-	Del	intronic	D	84823873	84823876	1	105	1079.19	-	-	2	1	1	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	6	14	7	21	10	25	10	25	7	21	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726349547	11	129816163	AC	A	720	PASS	PRDM10	CCDS44771.1	r.?	-	-	Del	intronic	D	129816163	129816165	1	24	639.209	-	-	1	1	-	PRDM10|CCDS44771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDM10|CCDS44771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	1	11	3	16	10	28	10	28	3	16	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726355305	12	13095362	CTTCACTCTTTAAAAGGAATTCTGA	C	377	PASS	GPRC5D	CCDS8658.1	r.?	-	-	Del	intronic	D	13095362	13095387	24	56	701.258	-	-	1	1	1	GPRC5D|CCDS8658.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPRC5D|CCDS8658.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	7	6	6	4	22	24	23	26	7	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726357620	12	20487389	C	CT	929	PASS	-	-	-	-	-	Ins	-	I	20487389	20487399	1	72	843.357	-	-	9	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	5	11	11	13	32	36	32	36	11	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726358752	12	23991768	C	CT	420	PASS	SOX5	CCDS8699.1	r.?	-	-	Ins	intronic	I	23991768	23991778	1	8	365.883	-	-	9	1	1	SOX5|CCDS8699.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SOX5|CCDS8699.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	7	0	0	./.	7	0	11	0	25	7	25	8	11	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726360309	12	28693405	CA	C	660	PASS	CCDC91	CCDS8716.1	r.?	-	-	Del	intronic	D	28693405	28693410	1	40	592.677	-	-	4	1	1	CCDC91|CCDS8716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC91|CCDS8716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	4	7	6	7	28	28	28	28	6	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726360581	12	29484463	ATCT	A	1378	PASS	FAR2	CCDS8717.1	r.?	-	-	Del	intronic	D	29484463	29484471	3	144	1295.74	-	-	2	1	1	FAR2|CCDS8717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAR2|CCDS8717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	7	17	8	23	25	42	25	42	8	23	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726364770	12	46187513	C	CATATTTATATATACACACACACACACATATATATCTCAGCAAGATATTCTACAT	420	PASS	ARID2	CCDS31783.1	r.?	-	-	Ins	intronic	I	46187513	46187518	54	20	150.346	-	-	0	1	-	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	4	0	0	35	31	35	31	3	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726371478	12	69496297	GT	G	900	PASS	-	-	-	-	-	Del	-	D	69496297	69496306	1	72	808.032	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	8	7	13	11	39	29	39	29	13	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726372244	12	71696139	G	GT	1080	PASS	TSPAN8	CCDS8999.1	r.?	-	-	Ins	intronic	I	71696139	71696146	1	99	960.969	-	-	6	1	1	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	8	10	10	12	28	38	28	38	10	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726376279	12	86132334	T	TACAC	292	PASS	-	-	-	-	-	Ins	-	I	86132334	86132342	4	30	444.963	-	-	3	1	-	-	-	./.	0	0	0	0	12	4	12	5	0	0	./.	4	5	8	10	31	33	34	34	8	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726378841	12	94648641	AGC	A	1200	PASS	PLXNC1	CCDS9049.1	r.2961_2962delGC	c.2961_2962delGC	p.E987fs*7	Del	frameshift	D	94648641	94648644	2	105	1078.58	-	-	1	1	1	PLXNC1|CCDS9049.1|r.2961_2962delGC|c.2961_2962delGC|p.E987fs*7|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PLXNC1|CCDS9049.1|r.2961_2962delGC|c.2961_2962delGC|p.E987fs*7|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	20	17	20	0	0	./.	6	14	7	14	21	31	21	31	7	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726379845	12	97363725	GATC	G	480	PASS	-	-	-	-	-	Del	-	D	97363725	97363734	3	24	431.914	-	-	2	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	3	5	4	51	31	51	31	5	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726386395	12	120402419	ATATATATATATC	A	290	PASS	-	-	-	-	-	Del	-	D	120402419	120402433	12	32	533.871	-	-	1	1	-	-	-	./.	0	0	0	0	10	3	11	3	0	0	./.	7	3	6	4	12	13	17	20	7	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726387108	12	122066275	TTAAGGCCCAGAGCACGCTGGGCCACAGTGG	T	319	PASS	ORAI1	ENST00000330079	r.?	-	-	Del	intronic	D	122066275	122066306	30	42	593.881	-	-	1	1	1	ORAI1|ENST00000330079|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ORAI1|ENST00000330079|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	5	3	5	18	25	21	26	6	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726391456	12	133679634	CTG	C	960	PASS	ZNF140	CCDS9282.1	r.?	-	-	Del	intronic	D	133679634	133679638	2	72	863.827	-	-	1	1	1	ZNF140|CCDS9282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF140|CCDS9282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	5	11	8	13	23	32	23	32	8	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726397903	13	35240130	C	CA	960	PASS	-	-	-	-	-	Ins	-	I	35240130	35240136	1	80	855.714	-	-	5	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	7	9	12	13	39	35	40	37	12	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726399648	13	40975771	GGCA	G	809	PASS	-	-	-	-	-	Del	-	D	40975771	40975776	3	63	752.964	-	-	1	1	1	-	-	./.	0	0	0	0	5	17	5	17	0	0	./.	6	8	8	9	25	30	25	30	8	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726407113	13	64131879	CT	C	269	PASS	-	-	-	-	-	Del	-	D	64131879	64131884	1	10	266.206	-	-	4	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	1	4	9	9	27	26	27	26	9	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726414508	13	88162247	AC	A	540	PASS	-	-	-	-	-	Del	-	D	88162247	88162249	1	10	486.155	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	9	0	9	3	40	41	40	41	9	3	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726416409	13	93727253	GTAGGG	GT	642	PASS	-	-	-	-	-	Complex	-	DI	93727254	93727258	5	117	0	-	-	0	1	1	-	-	./.	0	0	0	0	25	14	25	14	0	0	./.	12	8	0	0	31	25	31	26	12	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726434120	14	53275064	CA	C	1229	PASS	-	-	-	-	-	Del	-	D	53275064	53275066	1	120	1136.09	-	-	1	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	7	14	10	20	26	45	26	45	10	20	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726437338	14	63573416	TC	T	780	PASS	KCNH5	CCDS45123.1	r.?	-	-	Del	upstream	D	63573416	63573419	1	56	703.44	-	-	2	1	1	KCNH5|CCDS45123.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KCNH5|CCDS45123.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	9	17	9	0	0	./.	7	6	7	7	33	33	33	33	7	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726438044	14	65819449	CA	C	449	PASS	-	-	-	-	-	Del	-	D	65819449	65819459	1	24	433.257	-	-	9	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	3	5	4	15	13	40	13	44	4	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726439095	14	69715046	AAC	A	1080	PASS	-	-	-	-	-	Del	-	D	69715046	69715050	2	100	974.225	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	9	9	10	11	34	28	34	28	10	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726440058	14	73217945	G	GTA	1469	PASS	DPF3	CCDS45133.1	r.?	-	-	Ins	intronic	I	73217945	73217949	2	180	1323.82	-	-	1	1	1	DPF3|CCDS45133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPF3|CCDS45133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	15	27	15	0	0	./.	14	11	19	14	56	35	56	37	19	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726444333	14	86417454	G	GA	1020	PASS	-	-	-	-	-	Ins	-	I	86417454	86417461	1	88	910.435	-	-	6	1	1	-	-	./.	0	0	0	0	21	5	21	5	0	0	./.	10	7	12	9	33	34	33	34	12	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726444544	14	86880109	AG	A	480	PASS	-	-	-	-	-	Del	-	D	86880109	86880114	1	24	433.257	-	-	4	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	5	3	6	5	23	35	23	35	6	5	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726446017	14	91789763	AG	A	1107	PASS	CCDC88C	CCDS45151.1	r.?	-	-	Del	intronic	D	91789763	91789765	1	117	1082.54	-	-	1	1	1	CCDC88C|CCDS45151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC88C|CCDS45151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	8	12	15	14	31	20	31	20	15	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726446271	14	92324496	C	CTTCTT	263	PASS	TC2N	CCDS9897.1	r.?	-	-	Ins	intronic	I	92324496	92324499	5	16	384.49	-	-	0	1	-	TC2N|CCDS9897.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TC2N|CCDS9897.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	7	1	6	1	23	31	23	31	9	1	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726446480	14	92772672	T	TTA	300	PASS	-	-	-	-	-	Ins	-	I	92772672	92772686	2	12	264.765	-	-	6	1	1	-	-	./.	0	0	0	0	12	19	13	19	0	0	./.	3	2	5	3	31	32	31	32	5	3	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726447813	14	96896844	GA	G	353	PASS	AK7	CCDS9945.1	r.?	-	-	Del	intronic	D	96896844	96896847	1	12	324.34	-	-	2	1	1	AK7|CCDS9945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK7|CCDS9945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	1	5	1	7	23	28	23	28	1	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726447991	14	97416239	T	TG	900	PASS	ENSG00000225163	ENST00000435624	r.?	-	-	Ins	downstream	I	97416239	97416246	1	70	802.723	-	-	6	1	1	ENSG00000225163|ENST00000435624|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000225163|ENST00000435624|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	15	13	15	0	0	./.	6	9	8	16	29	43	29	43	8	16	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726448004	14	97466004	TCAGCCTGGTAGGCTTCA	T	261	PASS	-	-	-	-	-	Del	-	D	97466004	97466023	17	30	486.812	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	4	5	4	26	20	26	20	5	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726449691	14	103611386	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	103611386	103611392	2	7	324.943	-	-	2	1	-	-	-	./.	0	0	0	0	15	23	16	23	0	0	./.	6	0	1	0	64	62	65	63	7	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726460321	15	49304859	TG	T	960	PASS	SECISBP2L	CCDS32234.1	r.1715delC	c.1581delC	p.T528fs*8	Del	frameshift	D	49304859	49304863	1	72	867.124	-	-	3	1	1	SECISBP2L|CCDS32234.1|r.1715delC|c.1581delC|p.T528fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SECISBP2L|CCDS32234.1|r.1715delC|c.1581delC|p.T528fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	7	17	7	0	0	./.	5	11	8	19	29	45	29	45	8	19	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726468371	15	72290906	C	CCT	356	PASS	MYO9A	CCDS10239.1	r.?	-	-	Ins	intronic	I	72290906	72290907	2	24	423.327	-	-	0	1	-	MYO9A|CCDS10239.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO9A|CCDS10239.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	5	0	0	39	30	39	30	3	5	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726472723	15	88317344	AAAGTAT	A	597	PASS	-	-	-	-	-	Del	-	D	88317344	88317352	6	130	1138.1	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	12	9	11	9	35	27	37	27	15	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726474912	15	95059857	CA	C	780	PASS	-	-	-	-	-	Del	-	D	95059857	95059866	1	44	704.539	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	10	3	12	6	37	19	37	19	13	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726480781	16	8920621	AGT	A	1200	PASS	PMM2	CCDS10536.1	r.?	-	-	Del	intronic	D	8920621	8920624	2	120	1083.44	-	-	1	1	1	PMM2|CCDS10536.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PMM2|CCDS10536.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	11	9	12	10	33	30	33	30	12	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726490555	16	33635829	TG	T	264	PASS	-	-	-	-	-	Del	-	D	33635829	33635832	1	55	757.204	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	10	5	14	47	62	47	62	5	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726492730	16	51027137	T	TA	1080	PASS	-	-	-	-	-	Ins	-	I	51027137	51027138	1	100	964.26	-	-	0	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	9	9	16	11	21	15	21	17	16	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726509448	17	21691077	G	GT	1080	PASS	-	-	-	-	-	Ins	-	I	21691077	21691087	1	99	964.838	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	10	8	11	16	31	52	31	52	11	16	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726512715	17	36156382	GCCA	G	277	PASS	-	-	-	-	-	Del	-	D	36156382	36156390	3	6	271.021	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	0	1	0	18	26	22	26	5	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726518693	17	54173839	AG	A	960	PASS	-	-	-	-	-	Del	-	D	54173839	54173842	1	65	867.267	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	12	5	20	18	43	18	43	5	20	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726527552	17	79478647	CAT	C	1020	PASS	ACTG1	CCDS11782.1	r.441_442delAU	c.367_368delAT	p.M123fs*2	Del	frameshift	D	79478647	79478651	2	88	920.267	-	-	1	1	1	ACTG1|CCDS11782.1|r.441_442delAU|c.367_368delAT|p.M123fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ACTG1|CCDS11782.1|r.441_442delAU|c.367_368delAT|p.M123fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	15	8	15	0	0	./.	7	10	8	13	27	29	27	29	8	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726534875	18	21694215	A	AAGGAGAAGGCGGGTGCGAGCTGAGCCCTTAACACCTGAGCAAAGGAGAGAACGCTGG	300	PASS	TTC39C	CCDS45839.1	r.?	-	-	Ins	intronic	I	21694215	21694225	57	10	99.4185	-	-	0	1	1	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	16	12	0	0	./.	4	1	0	0	26	26	26	26	4	1	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726538090	18	34313635	TTTTGATCCAGGAAGGAATAA	T	783	PASS	FHOD3	CCDS32816.1	r.?	-	-	Del	intronic	D	34313635	34313658	20	210	1461.62	-	-	1	1	1	FHOD3|CCDS32816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FHOD3|CCDS32816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	13	14	11	12	16	19	18	21	13	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726547280	18	66901163	CTT	C	1440	PASS	-	-	-	-	-	Del	-	D	66901163	66901168	2	153	1300.22	-	-	4	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	8	16	9	18	16	35	16	35	9	18	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726549460	18	73491104	TAGA	T	958	PASS	-	-	-	-	-	Del	-	D	73491104	73491112	3	84	921.419	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	6	11	10	14	25	40	25	40	10	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726549934	18	74713908	TCTAA	T	1018	PASS	MBP	CCDS32846.1	r.?	-	-	Del	intronic	D	74713908	74713916	4	99	974.416	-	-	1	1	1	MBP|CCDS32846.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MBP|CCDS32846.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	8	10	11	12	29	25	29	25	11	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726550362	18	75837073	TA	T	509	PASS	-	-	-	-	-	Del	-	D	75837073	75837078	1	30	471.554	-	-	4	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	4	9	8	27	27	27	27	9	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726550606	18	76598347	ATCAGCGCCCCC	A	377	PASS	-	-	-	-	-	Del	-	D	76598347	76598361	11	56	702.206	-	-	1	1	1	-	-	./.	0	0	0	0	22	9	22	9	0	0	./.	6	7	6	7	21	14	21	15	6	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726552005	19	2820318	CG	C	360	PASS	ZNF554	CCDS42462.1	r.?	-	-	Del	intronic	D	2820318	2820320	1	12	325.577	-	-	1	1	1	ZNF554|CCDS42462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF554|CCDS42462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	1	5	4	7	18	16	18	16	4	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726555112	19	9262911	GA	G	1000	PASS	ZNF317	CCDS12210.1	r.?	-	-	Del	intronic	D	9262911	9262913	1	91	976.732	-	-	1	1	1	ZNF317|CCDS12210.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF317|CCDS12210.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	6	12	14	17	29	35	29	35	14	17	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726570856	19	53368768	T	TATTATACATATATTTATATATATG	329	PASS	ZNF28	CCDS33093.1	r.?	-	-	Ins	intronic	I	53368768	53368782	24	12	238.881	-	-	0	1	-	ZNF28|CCDS33093.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF28|CCDS33093.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	5	1	0	0	17	25	23	26	5	1	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726576502	2	10901062	C	CG	780	PASS	ATP6V1C2	CCDS1674.1	r.?	-	-	Ins	intronic	I	10901062	10901068	1	54	689.786	-	-	5	1	1	ATP6V1C2|CCDS1674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP6V1C2|CCDS1674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	8	5	0	1	28	23	29	24	8	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726577325	2	13322346	TAGATGGGAAGCCTTTTGCAAGATATGAAAGCTGATAACTGCCTGCCAGGCCAGATACAGCTATGCCCAAAATAAACTCTGTGCCAACATCTCTTACTTCTTGGAGGCCTTGATGCCTCAAGTCCCATAAAGCTGTCTGATCCTGGTTCATGGATGAACCAGATAAATTAAAGACTTGAGTTAACTGGG	T	348	PASS	-	-	-	-	-	Del	-	D	13322346	13322535	188	45	645.061	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	8	4	0	0	17	17	25	21	8	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726595139	2	75152575	G	GT	960	PASS	-	-	-	-	-	Ins	-	I	75152575	75152585	1	77	848.041	-	-	9	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	6	10	11	11	34	30	34	30	11	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726600666	2	95543144	T	TCAGATGGG	266	PASS	TEKT4	CCDS2005.1	r.?	-	-	Ins	downstream	I	95543144	95543158	8	15	682.733	-	-	1	1	1	TEKT4|CCDS2005.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TEKT4|CCDS2005.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	21	14	21	14	0	0	./.	14	0	11	0	53	29	56	29	14	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726610178	2	135238069	A	AT	1200	PASS	TMEM163	CCDS2172.1	r.?	-	-	Ins	intronic	I	135238069	135238072	1	121	1062.46	-	-	2	1	1	TMEM163|CCDS2172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM163|CCDS2172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	11	21	11	0	0	./.	10	10	13	12	20	18	21	18	13	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726610450	2	137146451	ATGAT	AT	656	PASS	-	-	-	-	-	Complex	-	DI	137146452	137146455	4	56	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	6	7	0	0	12	17	12	17	6	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726617681	2	166020889	CAA	C	1260	PASS	SCN3A	CCDS33312.1	r.?	-	-	Del	intronic	D	166020889	166020893	2	132	1128.86	-	-	3	1	1	SCN3A|CCDS33312.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN3A|CCDS33312.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	11	10	12	11	32	32	32	32	12	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726625467	2	192548271	C	CAAA	987	PASS	OBFC2A	CCDS33352.1	r.?	-	-	Ins	intronic	I	192548271	192548275	3	99	933.877	-	-	3	1	1	OBFC2A|CCDS33352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OBFC2A|CCDS33352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	10	16	0	0	./.	8	10	11	10	30	30	30	30	11	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726625724	2	193274942	AT	A	660	PASS	-	-	-	-	-	Del	-	D	193274942	193274952	1	42	590.704	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	6	5	12	7	36	25	36	25	12	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726629173	2	205493004	T	TG	1020	PASS	PARD3B	CCDS42806.1	r.?	-	-	Ins	intronic	I	205493004	205493005	1	88	903.602	-	-	0	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	7	10	13	17	34	42	34	42	13	17	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726631755	2	213716830	CT	C	540	PASS	-	-	-	-	-	Del	-	D	213716830	213716835	1	30	483.796	-	-	4	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	4	5	5	8	17	28	17	28	5	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726638446	2	234124144	ATACGTG	A	319	PASS	ATG16L1	ENST00000431917	r.?	-	-	Del	intronic	D	234124144	234124151	6	42	591.306	-	-	1	1	1	ATG16L1|ENST00000431917|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATG16L1|ENST00000431917|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	6	7	6	20	39	20	40	7	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726640941	2	243179729	CT	C	261	PASS	-	-	-	-	-	Del	-	D	243179729	243179733	1	10	483.796	-	-	3	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	0	9	0	11	35	32	35	32	0	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726648044	20	24887256	T	TTA	448	PASS	-	-	-	-	-	Ins	-	I	24887256	24887257	2	40	636.127	-	-	0	1	1	-	-	./.	0	0	0	0	17	4	18	4	0	0	./.	3	9	1	0	28	24	30	24	4	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726650738	20	31160019	G	GT	1080	PASS	C20orf112	ENST00000201961	r.?	-	-	Ins	intronic	I	31160019	31160021	1	100	966.833	-	-	1	1	1	C20orf112|ENST00000201961|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C20orf112|ENST00000201961|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	9	9	14	10	22	23	23	24	14	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726653298	20	41201337	AGTT	A	1227	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41201337	41201344	3	108	1193.73	-	-	2	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	17	5	17	7	33	24	34	24	18	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726659761	20	61861414	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	61861414	61861420	1	6	261.942	-	-	5	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	0	10	3	21	27	21	27	10	3	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726662598	21	10746785	CT	C	600	PASS	-	-	-	-	-	Del	-	D	10746785	10746789	1	36	543.42	-	-	3	1	1	-	-	./.	0	0	0	0	30	37	30	37	0	0	./.	5	5	10	7	70	79	70	79	10	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726664289	21	15057877	T	TG	830	PASS	-	-	-	-	-	Ins	-	I	15057877	15057880	1	55	752.36	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	10	8	13	25	34	25	34	8	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726667464	21	23676709	GTTCATAACAGCACTA	G	551	PASS	-	-	-	-	-	Del	-	D	23676709	23676737	15	108	1030.69	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	8	11	7	8	34	32	34	35	8	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726670027	21	30486554	T	TA	509	PASS	C21orf7	CCDS13584.1	r.?	-	-	Ins	intronic	I	30486554	30486558	1	30	483.66	-	-	3	1	1	C21orf7|CCDS13584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C21orf7|CCDS13584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	4	18	4	0	0	./.	5	4	6	6	17	21	17	21	6	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726677715	22	22607073	TTGTACTTACATTCTG	T	348	PASS	-	-	-	-	-	Del	-	D	22607073	22607097	15	13	656.402	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	12	0	12	0	31	15	31	15	12	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726679326	22	28946229	AATT	A	1138	PASS	TTC28	CCDS46678.1	r.?	-	-	Del	intronic	D	28946229	28946233	3	120	1087.98	-	-	1	1	1	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	11	9	14	14	16	17	16	17	14	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726682482	22	41133497	T	TG	540	PASS	Z98048.1	ENST00000499213	r.?	-	-	Ins	intronic	I	41133497	41133500	1	28	485.077	-	-	2	1	1	Z98048.1|ENST00000499213|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	Z98048.1|ENST00000499213|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	6	3	7	5	12	12	12	12	7	5	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726695182	3	35867507	AT	A	1320	PASS	-	-	-	-	-	Del	-	D	35867507	35867516	1	135	1183.23	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	14	8	16	8	41	36	41	36	16	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726699233	3	51435619	ATATAT	A	778	PASS	RBM15B	CCDS33764.1	r.?	-	-	Del	downstream	D	51435619	51435631	5	63	753.73	-	-	2	1	1	RBM15B|CCDS33764.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	VPRBP|ENST00000273612|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	6	8	12	8	27	26	27	26	12	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726699298	3	51872797	GTAAATATATA	GC	435	PASS	-	-	-	-	-	Complex	-	DI	51872798	51872807	10	72	0	-	-	0	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	8	7	0	0	38	34	38	34	8	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726699807	3	53883558	T	TTA	269	PASS	CHDH	CCDS2873.1	r.?	-	-	Ins	upstream	I	53883558	53883559	2	12	262.567	-	-	0	1	1	CHDH|CCDS2873.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	IL17RB|CCDS2874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	0	0	30	20	31	20	3	2	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726700398	3	56064119	TATATA	T	1194	PASS	ERC2	CCDS46851.1	r.?	-	-	Del	intronic	D	56064119	56064127	5	150	1237.07	-	-	1	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	14	9	16	10	26	20	26	20	16	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726700800	3	57242970	AGAGT	A	629	PASS	HESX1	CCDS2881.1	r.?	-	-	Del	intronic	D	57242970	57242978	4	40	592.216	-	-	1	1	1	HESX1|CCDS2881.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HESX1|CCDS2881.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	4	7	8	13	18	35	18	35	8	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726719523	3	122421058	GTTTCTT	G	348	PASS	PARP14	CCDS46894.1	r.?	-	-	Del	intronic	D	122421058	122421074	6	48	644.248	-	-	2	1	1	PARP14|CCDS46894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARP14|CCDS46894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	7	3	8	15	31	18	31	6	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726719798	3	123749616	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	123749616	123749626	1	99	958.244	-	-	9	1	1	-	-	./.	0	0	0	0	15	23	15	24	0	0	./.	10	8	13	9	39	32	39	32	13	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726724876	3	142698921	GGT	G	269	PASS	-	-	-	-	-	Del	-	D	142698921	142698924	2	12	260.158	-	-	1	1	-	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	3	6	17	17	17	17	3	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726724964	3	142955867	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	142955867	142955876	1	30	479.122	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	4	10	11	37	35	38	35	10	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726727033	3	150141117	TTAAG	T	896	PASS	TSC22D2	CCDS3149.1	r.?	-	-	Del	intronic	D	150141117	150141124	4	88	915.243	-	-	1	1	1	TSC22D2|CCDS3149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSC22D2|CCDS3149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	10	7	11	12	37	26	37	26	11	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726729471	3	159065349	C	CT	1200	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Ins	intronic	I	159065349	159065358	1	121	1064.72	-	-	8	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	10	10	10	14	25	37	25	37	10	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726729786	3	160532289	ATGTATGTGTATATATATACACACACATATG	A	360	PASS	PPM1L	CCDS33886.1	r.?	-	-	Del	intronic	D	160532289	160532321	30	15	322.425	-	-	1	1	-	PPM1L|CCDS33886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPM1L|CCDS33886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	2	4	0	0	30	36	30	36	2	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726734949	3	177707260	AT	A	1560	PASS	-	-	-	-	-	Del	-	D	177707260	177707264	1	192	1398.58	-	-	3	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	15	11	18	13	28	28	28	28	18	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726736682	3	184540241	TA	T	749	PASS	VPS8	CCDS46971.1	r.?	-	-	Del	intronic	D	184540241	184540247	1	56	699.892	-	-	5	1	1	VPS8|CCDS46971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	VPS8|CCDS46971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	7	8	11	28	31	28	31	8	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726740011	3	194511846	CTTTTTTTTTTTTTTTTTTTTTTTT	C	261	PASS	-	-	-	-	-	Del	-	D	194511846	194511890	24	18	477.918	-	-	1	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	8	1	4	7	20	8	24	2	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726741278	4	38283	C	CA	665	PASS	-	-	-	-	-	Ins	-	I	38283	38290	1	182	1329.94	-	-	6	1	1	-	-	./.	0	0	0	0	80	78	80	79	0	0	./.	12	13	16	18	205	191	206	193	17	18	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726742790	4	4781205	CAG	C	817	PASS	-	-	-	-	-	Del	-	D	4781205	4781211	2	63	750.182	-	-	2	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	8	6	9	8	32	25	32	25	9	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726743245	4	6171986	TCACCACCACCACCACCATCACCACCACCATCACTGTCAACACCATCATAACCCTCTCCACCATCACCACCACTCTCCCCACCCTTCTCAC	T	389	PASS	JAKMIP1	CCDS47005.1	r.?	-	-	Del	intronic	D	6171986	6172093	90	18	368.167	-	-	1	1	-	JAKMIP1|CCDS47005.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	JAKMIP1|CCDS47005.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	19	21	20	0	0	./.	5	2	0	0	25	21	30	23	5	2	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726745163	4	12270787	A	AAAG	298	PASS	-	-	-	-	-	Ins	-	I	12270787	12270790	3	16	304.735	-	-	0	1	-	-	-	./.	0	0	0	0	15	12	16	12	0	0	./.	3	3	4	3	21	17	21	17	4	3	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726755396	4	45143832	AAG	A	1260	PASS	-	-	-	-	-	Del	-	D	45143832	45143840	2	130	1125.57	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	9	12	11	13	25	37	25	37	11	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726759042	4	57777081	CT	C	1140	PASS	REST	CCDS3509.1	r.592delU	c.278delT	p.E94fs*6	Del	frameshift	D	57777081	57777084	1	110	1021.59	-	-	2	1	1	REST|CCDS3509.1|r.592delU|c.278delT|p.E94fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	REST|CCDS3509.1|r.592delU|c.278delT|p.E94fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	16	21	16	21	0	0	./.	9	10	10	14	23	39	23	39	10	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726772906	4	103776518	TACA	T	1078	PASS	UBE2D3	CCDS3660.1	r.?	-	-	Del	intronic	D	103776518	103776525	3	110	1022.19	-	-	2	1	1	UBE2D3|CCDS3660.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	UBE2D3|CCDS3660.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	10	9	12	13	42	34	42	34	12	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726781775	4	135008470	TA	T	544	PASS	-	-	-	-	-	Del	-	D	135008470	135008474	1	45	645.594	-	-	3	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	8	9	11	25	32	25	32	9	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726787140	4	155023386	GAACA	G	1049	PASS	-	-	-	-	-	Del	-	D	155023386	155023396	4	99	964.176	-	-	2	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	10	8	13	11	29	33	29	33	13	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726791366	4	167521504	A	AT	1260	PASS	-	-	-	-	-	Ins	-	I	167521504	167521513	1	132	1115.34	-	-	8	1	1	-	-	./.	0	0	0	0	26	15	26	15	0	0	./.	10	11	14	12	32	36	33	36	14	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726797393	4	184989085	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	184989085	184989094	1	80	849.352	-	-	8	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	9	7	13	13	32	35	32	36	13	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726810426	5	28237762	TC	T	780	PASS	-	-	-	-	-	Del	-	D	28237762	28237769	1	56	692.742	-	-	6	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	7	6	10	12	23	30	23	30	10	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726811084	5	29898197	CCT	C	517	PASS	-	-	-	-	-	Del	-	D	29898197	29898204	2	18	485.01	-	-	3	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	1	8	12	10	28	28	28	28	12	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726812002	5	32326329	AT	A	1380	PASS	-	-	-	-	-	Del	-	D	32326329	32326333	1	150	1235.25	-	-	3	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	9	14	18	19	33	43	33	43	18	19	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726814998	5	42319860	C	CCG	957	PASS	-	-	-	-	-	Ins	-	I	42319860	42319861	2	80	839.963	-	-	0	1	1	-	-	./.	0	0	0	0	21	7	22	7	0	0	./.	9	7	10	9	31	26	31	27	10	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726815941	5	50157188	GA	G	449	PASS	-	-	-	-	-	Del	-	D	50157188	50157197	1	25	431.12	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	4	7	6	22	28	22	28	7	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726818756	5	58859687	CATAGAAA	C	580	PASS	PDE4D	CCDS47213.1	r.?	-	-	Del	intronic	D	58859687	58859697	7	120	1075.39	-	-	1	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	11	9	11	11	46	36	46	36	11	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726818965	5	59940480	CAGGGTTTAGGGA	C	812	PASS	DEPDC1B	CCDS3977.1	r.?	-	-	Del	intronic	D	59940480	59940498	12	224	1508.32	-	-	1	1	1	DEPDC1B|CCDS3977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DEPDC1B|CCDS3977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	22	16	22	0	0	./.	13	15	13	14	36	36	36	37	13	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726821273	5	68443730	T	TA	983	PASS	-	-	-	-	-	Ins	-	I	68443730	68443732	1	84	880.607	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	11	8	13	25	25	25	25	8	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726823517	5	77307033	C	CT	660	PASS	AP3B1	CCDS4041.1	r.?	-	-	Ins	intronic	I	77307033	77307042	1	42	580.748	-	-	8	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	6	5	9	9	31	30	31	30	9	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726825209	5	82673323	GT	G	540	PASS	-	-	-	-	-	Del	-	D	82673323	82673325	1	30	485.009	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	5	6	7	39	32	39	32	6	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726825782	5	84638929	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	84638929	84638936	1	36	586.167	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	3	8	7	9	28	36	28	37	7	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726834162	5	117411145	C	CA	960	PASS	ENSG00000230431	ENST00000438991	r.?	-	-	Ins	downstream	I	117411145	117411152	1	80	851.402	-	-	6	1	1	ENSG00000230431|ENST00000438991|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000230431|ENST00000438991|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	22	16	22	0	0	./.	7	9	13	11	35	33	36	34	13	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726837727	5	131734249	TTCC	T	934	PASS	SLC22A5	CCDS4154.1	r.?	-	-	Del	downstream	D	131734249	131734258	3	90	916.129	-	-	2	1	1	SLC22A5|CCDS4154.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC22A5|CCDS4154.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	18	13	18	0	0	./.	9	8	9	11	26	28	26	28	9	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726837856	5	132206541	G	GT	600	PASS	AFF4	CCDS4164.1	r.?	-	-	Ins	downstream	I	132206541	132206547	1	32	531.675	-	-	5	1	1	AFF4|CCDS4164.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GDF9|CCDS4162.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	7	12	7	0	0	./.	3	7	4	10	25	28	25	28	4	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726846438	5	164975741	C	CA	1709	PASS	-	-	-	-	-	Ins	-	I	164975741	164975750	1	198	1541.13	-	-	8	1	-	-	-	./.	0	0	0	0	25	17	25	17	0	0	./.	8	21	16	24	44	51	44	51	16	24	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726858489	6	20747322	A	AT	1020	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Ins	intronic	I	20747322	20747332	1	90	903.804	-	-	9	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	20	0	0	./.	9	8	10	15	30	40	30	40	10	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726863040	6	32053501	TGATCTGAGCAGAGTCCAA	T	348	PASS	TNXB	CCDS47407.1	r.3350+8_3350+25del18	c.3148+8_3148+25del18	p.?	Del	splice region	D	32053501	32053523	18	48	646.479	-	-	1	1	1	TNXB|CCDS47407.1|r.3350+8_3350+25del18|c.3148+8_3148+25del18|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	TNXB|CCDS47407.1|r.3350+8_3350+25del18|c.3148+8_3148+25del18|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	16	16	16	16	0	0	./.	7	5	7	5	21	19	21	19	7	5	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726875398	6	69100954	GT	G	360	PASS	-	-	-	-	-	Del	-	D	69100954	69100961	1	15	323.239	-	-	6	1	-	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	2	7	9	17	24	17	24	7	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726880055	6	84695007	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	84695007	84695025	2	12	268.764	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	4	2	44	34	44	34	4	2	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726880814	6	87952682	TAC	T	1020	PASS	ZNF292	CCDS47457.1	r.?	-	-	Del	intronic	D	87952682	87952686	2	90	915.845	-	-	1	1	1	ZNF292|CCDS47457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF292|CCDS47457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	24	11	24	0	0	./.	9	8	16	13	35	32	35	32	16	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726884375	6	101188384	ATCTG	A	1047	PASS	ASCC3	CCDS5046.1	r.?	-	-	Del	intronic	D	101188384	101188392	4	90	1022.99	-	-	1	1	1	ASCC3|CCDS5046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASCC3|CCDS5046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	14	7	15	35	31	35	31	7	15	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726895531	6	141685012	GTAGA	G	300	PASS	-	-	-	-	-	Del	-	D	141685012	141685029	4	10	269.366	-	-	4	1	-	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	1	4	5	9	27	29	27	29	5	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726897370	6	149514767	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	149514767	149514777	1	30	478.237	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	15	13	0	0	./.	5	4	7	7	43	34	43	34	7	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726900870	6	159993529	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	159993529	159993531	1	20	372.898	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	11	10	0	0	./.	3	4	4	6	23	33	23	33	4	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726901638	6	162268401	C	CA	840	PASS	PARK2	CCDS5281.1	r.?	-	-	Ins	intronic	I	162268401	162268408	1	48	745.797	-	-	6	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	14	0	0	./.	11	3	18	9	49	26	49	26	18	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726908620	7	12528554	G	GGT	507	PASS	-	-	-	-	-	Ins	-	I	12528554	12528555	2	20	508.981	-	-	0	1	1	-	-	./.	0	0	0	0	16	13	17	14	0	0	./.	1	9	0	0	31	31	31	32	1	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726908846	7	13319440	TTTG	T	689	PASS	-	-	-	-	-	Del	-	D	13319440	13319452	3	48	646.9	-	-	3	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	5	7	6	8	21	30	21	30	6	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726909502	7	15153025	TTTTTTTTTTTT	TATATATATA	261	PASS	-	-	-	-	-	Complex	-	DI	15153026	15153036	11	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	5	4	0	0	18	30	18	30	5	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726909847	7	16429553	A	AT	420	PASS	ISPD	CCDS47550.1	r.?	-	-	Ins	intronic	I	16429553	16429554	1	20	359.899	-	-	0	1	-	ISPD|CCDS47550.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ISPD|CCDS47550.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	3	4	8	12	24	35	24	35	8	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726914593	7	32253607	GA	G	540	PASS	PDE1C	ENST00000396193	r.?	-	-	Del	intronic	D	32253607	32253614	1	30	485.175	-	-	6	1	1	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	4	10	9	32	35	32	35	10	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726918878	7	46476891	AT	A	360	PASS	-	-	-	-	-	Del	-	D	46476891	46476901	1	16	323.45	-	-	9	1	1	-	-	./.	0	0	0	0	20	27	20	27	0	0	./.	3	3	6	6	37	43	37	43	6	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726925649	7	66203001	GT	G	300	PASS	RABGEF1	CCDS5535.1	r.?	-	-	Del	upstream	D	66203001	66203010	1	10	261.715	-	-	8	1	-	RABGEF1|CCDS5535.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KCTD7|ENST00000451741|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	1	4	8	11	15	35	15	35	8	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726933755	7	94234624	TAA	T	1229	PASS	SGCE	CCDS47642.1	r.?	-	-	Del	intronic	D	94234624	94234627	2	126	1130.27	-	-	2	1	1	SGCE|CCDS47642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCE|CCDS47642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	13	8	18	13	39	38	39	38	18	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726940520	7	116763550	T	TA	1140	PASS	ST7OT3	CCDS5770.1	r.?	-	-	Ins	intronic	I	116763550	116763552	1	110	1012.82	-	-	1	1	1	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	15	13	0	0	./.	10	9	17	11	36	26	36	26	17	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726940601	7	117233002	T	TA	540	PASS	CFTR	CCDS5773.1	r.?	-	-	Ins	intronic	I	117233002	117233004	1	24	479.757	-	-	1	1	1	CFTR|CCDS5773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CFTR|CCDS5773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	22	14	0	0	./.	2	7	5	11	23	29	23	29	5	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726941336	7	121083989	A	ATATTCGGAATACAGAATATATTCCTATATTCTG	307	PASS	-	-	-	-	-	Ins	-	I	121083989	121084007	33	12	204.242	-	-	0	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	5	1	0	0	46	63	47	63	5	1	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726946912	7	138112529	CA	C	449	PASS	-	-	-	-	-	Del	-	D	138112529	138112534	1	21	430.665	-	-	4	1	-	-	-	./.	0	0	0	0	7	21	7	21	0	0	./.	2	6	5	8	22	28	22	28	5	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726952861	7	156347423	AC	A	960	PASS	-	-	-	-	-	Del	-	D	156347423	156347425	1	80	847.482	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	7	9	12	11	35	28	35	28	12	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726952943	7	156634034	GAAGA	G	567	PASS	LMBR1	CCDS5945.1	r.?	-	-	Del	intronic	D	156634034	156634042	4	40	592.992	-	-	1	1	1	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	7	4	8	4	23	19	23	19	8	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726956525	8	9395004	TCTATC	T	408	PASS	-	-	-	-	-	Del	-	D	9395004	9395011	5	56	700.528	-	-	1	1	-	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	6	0	0	21	16	21	16	7	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726964297	8	38927692	AG	A	360	PASS	ADAM9	CCDS6112.1	r.?	-	-	Del	intronic	D	38927692	38927694	1	7	322.117	-	-	1	1	-	ADAM9|CCDS6112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM9|CCDS6112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	6	0	15	0	122	197	122	197	15	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726964413	8	39165328	AAG	A	387	PASS	-	-	-	-	-	Del	-	D	39165328	39165332	2	9	390.154	-	-	1	1	-	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	8	0	13	0	136	102	136	102	16	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726965607	8	42312771	TATATAGAGAGAGAG	T	667	PASS	SLC20A2	CCDS6132.1	r.?	-	-	Del	intronic	D	42312771	42312787	14	150	1199.66	-	-	1	1	-	SLC20A2|CCDS6132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC20A2|CCDS6132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	14	9	1	0	79	60	79	60	15	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726965636	8	42374900	AAC	A	300	PASS	SLC20A2	CCDS6132.1	r.?	-	-	Del	intronic	D	42374900	42374904	2	6	264.015	-	-	1	1	1	SLC20A2|CCDS6132.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC20A2|CCDS6132.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	5	0	8	0	135	162	135	162	8	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726966316	8	47827306	CTGAGTAGTTTCAGGACATA	C	356	PASS	-	-	-	-	-	Del	-	D	47827306	47827327	19	40	646.641	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	9	1	7	5	26	7	28	3	9	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726968594	8	57256316	AT	A	841	PASS	-	-	-	-	-	Del	-	D	57256316	57256326	1	90	910.657	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	9	8	13	12	24	40	24	40	13	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726973669	8	77548061	TA	T	480	PASS	-	-	-	-	-	Del	-	D	77548061	77548069	1	25	431.094	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	6	6	42	43	42	43	6	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726974912	8	81791035	GT	G	1140	PASS	ZNF704	CCDS34913.1	r.?	-	-	Del	upstream	D	81791035	81791038	1	108	1011.81	-	-	2	1	1	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	19	18	19	0	0	./.	11	8	15	10	48	57	48	57	15	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726975119	8	82630186	TAA	T	780	PASS	ZFAND1	CCDS6232.1	r.?	-	-	Del	intronic	D	82630186	82630191	2	54	699.926	-	-	4	1	1	ZFAND1|CCDS6232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFAND1|CCDS6232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	8	5	12	8	54	45	54	45	12	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726976564	8	87896404	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	87896404	87896412	1	7	308.269	-	-	7	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	6	1	1	35	26	35	27	1	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726976604	8	88120200	CTATT	C	960	PASS	-	-	-	-	-	Del	-	D	88120200	88120206	4	81	862.188	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	8	8	14	14	32	35	32	35	14	14	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726981933	8	108014304	C	CA	1258	PASS	-	-	-	-	-	Ins	-	I	108014304	108014314	1	140	1168.65	-	-	9	1	1	-	-	./.	0	0	0	0	22	24	22	24	0	0	./.	13	9	16	12	28	50	28	50	16	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726984382	8	116742294	G	GA	7477	PASS	TRPS1	ENST00000422939	r.?	-	-	Ins	intronic	I	116742294	116742302	1	3922	6650.35	-	-	7	1	1	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	25	19	25	0	0	./.	73	52	93	78	191	166	193	169	93	78	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726985375	8	119468624	CT	C	1140	PASS	SAMD12	CCDS47913.1	r.?	-	-	Del	intronic	D	119468624	119468627	1	98	1021.44	-	-	2	1	1	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	13	6	17	7	64	47	64	47	17	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726993574	9	332824	G	GT	720	PASS	DOCK8	CCDS6440.1	r.?	-	-	Ins	intronic	I	332824	332831	1	48	640.076	-	-	6	1	1	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	5	9	6	0	0	./.	5	7	9	11	26	29	27	29	9	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2726996688	9	10057862	C	CCA	449	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	10057862	10057863	2	16	416.081	-	-	0	1	-	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	1	7	0	0	28	33	28	33	1	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727011506	9	75810514	C	CT	749	PASS	-	-	-	-	-	Ins	-	I	75810514	75810523	1	54	692.914	-	-	8	1	1	-	-	./.	0	0	0	0	13	24	13	25	0	0	./.	8	5	13	8	37	32	37	32	13	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727023108	9	117317568	CG	C	307	PASS	-	-	-	-	-	Del	-	D	117317568	117317570	1	7	294.751	-	-	1	1	1	-	-	./.	0	0	0	0	2	8	2	8	0	0	./.	6	0	12	0	24	11	24	11	12	0	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727034490	X	23999220	A	ACT	720	PASS	KLHL15	CCDS35217.1	r.?	-	-	Ins	downstream	I	23999220	23999230	2	49	632.557	-	-	4	1	1	KLHL15|CCDS35217.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KLHL15|CCDS35217.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	20	11	20	0	0	./.	6	6	7	8	21	32	21	32	7	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727040366	X	55715330	AT	A	540	PASS	-	-	-	-	-	Del	-	D	55715330	55715333	1	30	486.459	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	5	4	6	17	21	17	21	4	6	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727042625	X	73474168	TTC	T	960	PASS	-	-	-	-	-	Del	-	D	73474168	73474178	2	80	864.079	-	-	4	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	7	9	9	10	27	32	27	32	9	10	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727042845	X	74842038	AG	A	404	PASS	-	-	-	-	-	Del	-	D	74842038	74842041	1	24	432.943	-	-	2	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	3	5	4	5	23	33	23	33	4	5	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727046170	X	90349767	TA	T	720	PASS	-	-	-	-	-	Del	-	D	90349767	90349771	1	40	649.414	-	-	3	1	1	-	-	./.	0	0	0	0	26	16	26	16	0	0	./.	9	3	12	4	24	21	24	21	12	4	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727046366	X	91449927	C	CT	780	PASS	PCDH11X	CCDS14461.1	r.?	-	-	Ins	intronic	I	91449927	91449934	1	56	693.899	-	-	6	1	1	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	24	14	24	0	0	./.	6	7	8	11	31	32	31	32	8	11	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727046753	X	92975644	GA	G	780	PASS	-	-	-	-	-	Del	-	D	92975644	92975651	1	44	703.532	-	-	6	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	10	7	13	19	36	19	36	7	13	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727049321	X	104871661	GA	G	960	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104871661	104871665	1	65	865.886	-	-	3	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	12	4	13	8	36	29	36	29	13	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727053949	X	129749430	TA	T	720	PASS	-	-	-	-	-	Del	-	D	129749430	129749435	1	48	648.812	-	-	4	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	7	11	12	29	30	29	30	11	12	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727055005	X	135403068	A	AC	360	PASS	GPR112	CCDS35409.1	r.?	-	-	Ins	intronic	I	135403068	135403076	1	16	320.493	-	-	7	1	1	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	3	7	16	33	17	33	3	7	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727055363	X	137074461	AAC	A	269	PASS	-	-	-	-	-	Del	-	D	137074461	137074465	2	12	250.119	-	-	1	1	-	-	-	./.	0	0	0	0	21	5	21	5	0	0	./.	2	3	0	0	25	18	25	18	2	3	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727056053	X	140969012	TGAG	T	840	PASS	MAGEC3	CCDS14676.1	r.?	-	-	Del	intronic	D	140969012	140969028	3	64	757.65	-	-	5	1	1	MAGEC3|CCDS14676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGEC3|CCDS14676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	7	7	10	8	26	23	26	23	10	8	1	1	1	1	1	1	1	1
2662709	PD6700a2	PD6700b2	2727057470	X	146471660	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	146471660	146471661	1	36	535.158	-	-	0	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	5	8	10	27	21	27	21	8	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754787502	1	8505114	TA	T	600	PASS	RERE	CCDS41243.1	r.?	-	-	Del	intronic	D	8505114	8505122	1	35	537.253	-	-	7	1	1	RERE|CCDS41243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RERE|CCDS41243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	6	4	11	4	28	12	28	12	11	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754788470	1	10840645	CGG	C	480	PASS	CASZ1	CCDS41246.1	r.?	-	-	Del	intronic	D	10840645	10840651	2	21	429.802	-	-	5	1	1	CASZ1|CCDS41246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CASZ1|CCDS41246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	6	2	7	3	25	19	25	19	7	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754790821	1	16979401	T	TAA	365	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16979401	16979409	2	12	577.733	-	-	7	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	19	28	20	0	0	./.	11	0	16	0	70	44	72	45	16	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754791227	1	17751843	A	AG	720	PASS	RCC2	CCDS181.1	r.?	-	-	Ins	intronic	I	17751843	17751850	1	45	637.478	-	-	6	1	1	RCC2|CCDS181.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RCC2|CCDS181.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	17	0	0	./.	8	4	11	9	23	28	23	29	11	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754795646	1	29238558	C	CA	300	PASS	EPB41	CCDS331.1	r.?	-	-	Ins	intronic	I	29238558	29238568	1	12	265.616	-	-	9	1	1	EPB41|CCDS331.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	EPB41|CCDS331.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	3	2	3	2	32	28	33	29	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754797297	1	34657681	TAG	T	269	PASS	C1orf94	CCDS381.1	r.?	-	-	Del	intronic	D	34657681	34657686	2	10	265.616	-	-	2	1	1	C1orf94|CCDS381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C1orf94|CCDS381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	1	5	3	20	22	20	22	5	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754802465	1	50642689	GCT	G	300	PASS	ELAVL4	CCDS44140.1	r.?	-	-	Del	intronic	D	50642689	50642706	2	12	263.208	-	-	8	1	-	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	26	10	26	0	0	./.	2	3	2	3	19	25	19	25	2	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754805632	1	61328801	TTTC	T	389	PASS	NFIA	ENST00000371191	r.?	-	-	Del	upstream	D	61328801	61328813	3	20	375.475	-	-	3	1	1	NFIA|ENST00000371191|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NFIA|ENST00000371191|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	18	13	18	0	0	./.	3	4	6	9	33	30	33	30	6	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754812673	1	83028845	CTT	C	540	PASS	-	-	-	-	-	Del	-	D	83028845	83028849	2	30	483.527	-	-	3	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	5	4	8	5	25	21	25	21	8	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754814296	1	88420666	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	88420666	88420684	2	12	268.626	-	-	8	1	-	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	3	2	20	20	20	20	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754819890	1	106080879	TTAA	T	449	PASS	-	-	-	-	-	Del	-	D	106080879	106080888	3	24	429.802	-	-	2	1	1	-	-	./.	0	0	0	0	25	10	25	10	0	0	./.	3	5	7	5	21	16	21	16	7	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754824618	1	142545514	CAT	C	290	PASS	ENSG00000238159	ENST00000426281	r.?	-	-	Del	downstream	D	142545514	142545518	2	50	697.826	-	-	1	1	1	ENSG00000238159|ENST00000426281|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000238159|ENST00000426281|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	60	42	60	42	0	0	./.	9	4	9	4	64	69	64	69	9	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754829151	1	150940756	TCA	T	360	PASS	SETDB1	CCDS972.1	r.?	-	-	Del	downstream	D	150940756	150940759	2	15	321.147	-	-	1	1	1	SETDB1|CCDS972.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LASS2|CCDS973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	2	4	3	26	14	26	14	4	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754832529	1	160593979	G	GA	300	PASS	SLAMF1	CCDS1207.1	r.1051-5_1051-4insu	c.701-5_701-4insT	p.?	Ins	splice region	I	160593979	160593989	1	12	265.616	-	-	9	1	1	SLAMF1|CCDS1207.1|r.1051-5_1051-4insu|c.701-5_701-4insT|p.?|protein_coding:CDS:extended_intronic_splice_region:insertion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000667:SO:CGPX04:SO:0001576	SLAMF1|CCDS1207.1|r.1051-5_1051-4insu|c.701-5_701-4insT|p.?|protein_coding:CDS:extended_intronic_splice_region:insertion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000667:SO:CGPX04:SO:0001576	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	3	2	35	29	35	29	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754833083	1	162210660	A	ATG	720	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Ins	intronic	I	162210660	162210662	2	48	630.254	-	-	0	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	7	5	7	6	26	24	26	24	7	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754833675	1	163838018	AG	A	360	PASS	-	-	-	-	-	Del	-	D	163838018	163838020	1	15	322.352	-	-	1	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	2	4	4	5	30	23	30	23	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754833739	1	164074610	G	GA	629	PASS	-	-	-	-	-	Ins	-	I	164074610	164074618	1	42	583.151	-	-	7	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	6	5	9	7	30	27	30	27	9	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754840881	1	185741707	GAAGAAATGTA	G	551	PASS	HMCN1	CCDS30956.1	r.?	-	-	Del	intronic	D	185741707	185741718	10	104	1019.58	-	-	1	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	12	7	12	9	29	23	29	23	12	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754842492	1	190154737	C	CA	360	PASS	FAM5C	CCDS1373.1	r.?	-	-	Ins	intronic	I	190154737	190154741	1	16	318.739	-	-	3	1	1	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	22	17	23	0	0	./.	3	3	5	4	37	29	37	31	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754843309	1	192569547	GA	G	540	PASS	-	-	-	-	-	Del	-	D	192569547	192569556	1	30	483.527	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	5	6	8	21	25	21	25	6	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754849161	1	209212287	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	209212287	209212307	2	12	268.626	-	-	9	1	-	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	3	2	3	2	29	20	29	20	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754850052	1	211655166	AAC	A	300	PASS	RD3	CCDS1498.1	r.?	-	-	Del	intronic	D	211655166	211655183	2	12	268.626	-	-	8	1	1	RD3|CCDS1498.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RD3|CCDS1498.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	3	1	26	25	26	25	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754851756	1	216380382	AT	A	720	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216380382	216380392	1	40	642.897	-	-	9	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	9	6	13	22	40	22	40	6	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754852504	1	218481153	G	GCCATTT	261	PASS	RRP15	CCDS1520.2	r.?	-	-	Ins	intronic	I	218481153	218481160	6	30	449.812	-	-	1	1	1	RRP15|CCDS1520.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RRP15|CCDS1520.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	5	4	5	24	34	24	35	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754855705	1	227362234	T	TC	600	PASS	CDC42BPA	CCDS1558.1	r.?	-	-	Ins	intronic	I	227362234	227362242	1	36	530.63	-	-	7	1	1	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	16	23	16	0	0	./.	5	5	5	7	22	36	23	36	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754862539	1	244893630	CAACATTGCATGTGCTT	C	435	PASS	-	-	-	-	-	Del	-	D	244893630	244893647	16	70	805.879	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	9	5	9	19	33	20	33	6	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754864042	1	248209226	A	AAT	420	PASS	OR2L13	CCDS1637.1	r.?	-	-	Ins	intronic	I	248209226	248209235	2	14	367.648	-	-	4	1	1	OR2L13|CCDS1637.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	OR2L13|CCDS1637.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	1	6	2	10	17	34	17	34	2	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754867661	10	7749293	A	AT	420	PASS	ITIH2	CCDS31141.1	r.?	-	-	Ins	intronic	I	7749293	7749297	1	20	372.451	-	-	3	1	1	ITIH2|CCDS31141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITIH2|CCDS31141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	4	3	5	3	20	24	20	24	5	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754868324	10	9051973	CCTTTTTAAAGTAAT	C	464	PASS	-	-	-	-	-	Del	-	D	9051973	9051990	14	77	860.951	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	6	10	6	10	25	31	25	31	6	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754868414	10	9265182	TTA	T	269	PASS	-	-	-	-	-	Del	-	D	9265182	9265201	2	12	249.179	-	-	9	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	3	2	3	3	20	19	20	19	3	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754869780	10	12510266	AG	A	1140	PASS	CAMK1D	CCDS7091.1	r.?	-	-	Del	intronic	D	12510266	12510269	1	108	1019.37	-	-	2	1	1	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	11	8	17	11	32	27	32	27	17	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754871723	10	17132236	GA	G	449	PASS	CUBN	CCDS7113.1	r.?	-	-	Del	intronic	D	17132236	17132244	1	16	429.271	-	-	7	1	1	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	1	7	2	11	11	22	11	22	2	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754872608	10	19860959	GAAC	G	929	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	19860959	19860967	3	77	859.144	-	-	2	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	10	6	14	13	21	18	21	18	14	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754881073	10	43036893	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	43036893	43036903	1	10	266.037	-	-	9	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	1	4	1	31	26	31	27	4	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754881513	10	44262003	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	44262003	44262010	1	24	425.659	-	-	6	1	1	-	-	./.	0	0	0	0	13	10	13	12	0	0	./.	3	5	3	5	23	24	23	26	3	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754883570	10	53387046	GA	G	840	PASS	PRKG1	CCDS7244.1	r.?	-	-	Del	intronic	D	53387046	53387055	1	60	753.332	-	-	8	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	5	9	7	13	24	20	24	20	7	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754883868	10	53728597	AG	A	480	PASS	PRKG1	CCDS7244.1	r.?	-	-	Del	intronic	D	53728597	53728599	1	9	422.046	-	-	1	1	-	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	8	0	27	0	190	209	190	209	27	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754884468	10	55164982	TTG	T	420	PASS	-	-	-	-	-	Del	-	D	55164982	55165002	2	20	376.666	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	4	3	5	74	63	74	63	3	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754885306	10	56871621	AC	A	1169	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	56871621	56871623	1	112	1073.78	-	-	1	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	7	13	14	20	35	48	35	48	14	20	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754886491	10	59748643	CT	C	900	PASS	-	-	-	-	-	Del	-	D	59748643	59748649	1	70	806.539	-	-	5	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	9	6	10	9	22	18	22	18	10	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754889712	10	69596736	ATATTT	A	360	PASS	DNAJC12	CCDS7271.1	r.?	-	-	Del	intronic	D	69596736	69596745	5	7	322.856	-	-	1	1	1	DNAJC12|CCDS7271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC12|CCDS7271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	6	0	9	1	14	5	14	5	9	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754896556	10	89717671	AC	A	1500	PASS	PTEN	ENST00000371953	r.2054delC	c.697delC	p.R233fs*23	Del	frameshift	D	89717671	89717673	1	162	1344.03	-	-	1	1	1	PTEN|ENST00000371953|r.2054delC|c.697delC|p.R233fs*23|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PTEN|ENST00000371953|r.2054delC|c.697delC|p.R233fs*23|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	14	11	14	0	0	./.	8	17	12	23	20	33	20	33	12	23	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754900452	10	101904077	ATTTTTTATTTTTTAAATTTTTATTTTTTGAGATGGAGT	A	290	PASS	-	-	-	-	-	Del	-	D	101904077	101904116	38	11	538.094	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	10	0	5	0	24	16	29	16	10	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754900976	10	103265569	A	AC	269	PASS	BTRC	CCDS7512.1	r.?	-	-	Ins	intronic	I	103265569	103265578	1	12	264.833	-	-	8	1	1	BTRC|CCDS7512.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BTRC|CCDS7512.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	12	19	12	0	0	./.	2	3	4	3	22	18	22	19	4	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754903613	10	111400320	TG	T	276	PASS	-	-	-	-	-	Del	-	D	111400320	111400322	1	6	258.812	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	6	0	30	23	30	23	6	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754906714	10	119231023	ACTC	A	540	PASS	-	-	-	-	-	Del	-	D	119231023	119231032	3	10	484.285	-	-	2	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	0	9	10	11	239	263	239	263	10	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754906749	10	119263066	GC	G	3809	PASS	-	-	-	-	-	Del	-	D	119263066	119263068	1	1085	3425.74	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	30	34	49	47	212	220	212	220	49	47	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754906883	10	119502860	AC	A	269	PASS	-	-	-	-	-	Del	-	D	119502860	119502862	1	6	262.424	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	0	11	0	55	66	55	66	11	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754907037	10	119802209	CTG	C	360	PASS	RAB11FIP2	CCDS7602.1	r.?	-	-	Del	intronic	D	119802209	119802225	2	7	322.856	-	-	7	1	1	RAB11FIP2|CCDS7602.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB11FIP2|CCDS7602.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	6	0	6	0	67	57	67	57	6	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754908803	10	123230824	TG	T	360	PASS	-	-	-	-	-	Del	-	D	123230824	123230826	1	7	309.611	-	-	1	1	-	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	6	0	32	1	417	182	418	182	32	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754908862	10	123281175	AG	A	269	PASS	FGFR2	CCDS44486.1	r.?	-	-	Del	intronic	D	123281175	123281177	1	6	260.618	-	-	1	1	1	FGFR2|CCDS44486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGFR2|CCDS44486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	16	20	0	0	./.	5	0	23	0	392	377	410	384	23	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754909355	10	123645101	AC	A	360	PASS	ATE1	CCDS31299.1	r.?	-	-	Del	intronic	D	123645101	123645103	1	7	316.234	-	-	1	1	1	ATE1|CCDS31299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATE1|CCDS31299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	6	0	23	0	410	244	410	244	23	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754909403	10	123670975	AC	A	600	PASS	ATE1	CCDS31299.1	r.?	-	-	Del	intronic	D	123670975	123670977	1	11	519.43	-	-	1	1	-	ATE1|CCDS31299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATE1|CCDS31299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	10	0	38	0	437	434	437	434	38	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754909550	10	123742320	AG	A	420	PASS	-	-	-	-	-	Del	-	D	123742320	123742322	1	8	367.033	-	-	1	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	0	67	0	425	402	425	402	67	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754909695	10	123818424	TG	T	895	PASS	TACC2	CCDS7626.1	r.?	-	-	Del	intronic	D	123818424	123818426	1	17	771.244	-	-	1	1	1	TACC2|CCDS7626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TACC2|CCDS7626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	16	0	59	0	392	379	392	379	59	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754910111	10	124119058	AG	A	420	PASS	-	-	-	-	-	Del	-	D	124119058	124119060	1	8	366.431	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	7	0	25	0	548	463	548	463	25	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754910139	10	124144142	AAT	A	329	PASS	PLEKHA1	CCDS7629.1	r.?	-	-	Del	intronic	D	124144142	124144145	2	7	313.223	-	-	1	1	1	PLEKHA1|CCDS7629.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLEKHA1|CCDS7629.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	21	15	0	0	./.	6	0	46	0	596	483	596	483	46	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754910166	10	124163130	TA	T	780	PASS	PLEKHA1	CCDS7629.1	r.?	-	-	Del	intronic	D	124163130	124163132	1	14	686.879	-	-	1	1	1	PLEKHA1|CCDS7629.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHA1|CCDS7629.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	22	6	22	0	0	./.	13	0	44	0	562	660	562	660	44	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754910955	10	126272949	AG	A	300	PASS	LHPP	CCDS7640.1	r.?	-	-	Del	intronic	D	126272949	126272951	1	6	255.2	-	-	1	1	-	LHPP|CCDS7640.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHPP|CCDS7640.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	0	9	0	42	30	42	30	9	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754911173	10	126533293	TG	T	509	PASS	-	-	-	-	-	Del	-	D	126533293	126533295	1	10	455.386	-	-	1	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	9	0	16	0	208	132	208	132	16	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754911461	10	126740242	AG	A	660	PASS	CTBP2	CCDS7643.1	r.?	-	-	Del	intronic	D	126740242	126740244	1	12	571.433	-	-	1	1	1	CTBP2|CCDS7643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTBP2|CCDS7643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	11	0	24	0	238	201	238	201	24	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754911494	10	126775639	TC	T	300	PASS	CTBP2	CCDS7643.1	r.?	-	-	Del	intronic	D	126775639	126775641	1	6	233.525	-	-	1	1	-	CTBP2|CCDS7643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTBP2|CCDS7643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	0	5	0	18	189	240	189	240	0	18	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754920097	11	14212204	TG	T	300	PASS	SPON1	ENST00000310358	r.?	-	-	Del	intronic	D	14212204	14212206	1	6	255.055	-	-	1	1	-	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	0	10	0	24	17	24	17	10	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754920547	11	16022287	C	CGT	300	PASS	SOX6	CCDS7821.1	r.?	-	-	Ins	intronic	I	16022287	16022301	2	10	264.086	-	-	6	1	-	SOX6|CCDS7821.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SOX6|CCDS7821.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	1	4	2	4	14	28	15	28	2	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754930860	11	47233119	T	TTTTA	540	PASS	DDB2	CCDS7927.1	r.?	-	-	Ins	upstream	I	47233119	47233147	4	30	464.518	-	-	6	1	-	DDB2|CCDS7927.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	DDB2|CCDS7927.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	16	15	16	15	0	0	./.	5	4	9	5	36	27	36	27	9	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754931600	11	48790522	CA	C	480	PASS	-	-	-	-	-	Del	-	D	48790522	48790527	1	24	432.171	-	-	4	1	1	-	-	./.	0	0	0	0	28	21	28	21	0	0	./.	5	3	9	7	26	26	26	26	9	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754932144	11	50340144	GA	G	780	PASS	-	-	-	-	-	Del	-	D	50340144	50340149	1	44	702.278	-	-	4	1	1	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	3	10	12	11	23	26	23	26	12	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754941763	11	86087522	GGA	G	300	PASS	CCDC81	CCDS8276.1	r.?	-	-	Del	intronic	D	86087522	86087541	2	6	268.301	-	-	9	1	1	CCDC81|CCDS8276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC81|CCDS8276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	0	5	2	6	38	41	38	41	2	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754943446	11	90043595	CAG	C	1649	PASS	-	-	-	-	-	Del	-	D	90043595	90043600	2	225	1512	-	-	2	1	1	-	-	./.	0	0	0	0	20	28	20	28	0	0	./.	14	14	17	22	34	51	34	51	17	22	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754943501	11	90186353	AT	A	1078	PASS	-	-	-	-	-	Del	-	D	90186353	90186355	1	104	1023.4	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	7	12	13	13	35	30	35	30	13	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754960992	12	9604698	TATGAG	T	466	PASS	DDX12	ENST00000290818	r.?	-	-	Del	upstream	D	9604698	9604706	5	55	755.765	-	-	1	1	1	DDX12|ENST00000290818|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DDX12|ENST00000290818|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	14	18	14	0	0	./.	10	4	11	4	39	25	39	25	11	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754961038	12	9740359	GTACTAATTTCAACACTA	G	406	PASS	-	-	-	-	-	Del	-	D	9740359	9740378	17	63	755.765	-	-	1	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	6	8	7	8	32	38	32	38	7	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754965207	12	19698326	AT	A	840	PASS	-	-	-	-	-	Del	-	D	19698326	19698328	1	63	751.55	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	8	6	12	10	21	25	21	25	12	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754967998	12	26378997	CT	C	598	PASS	SSPN	CCDS8707.1	r.?	-	-	Del	intronic	D	26378997	26379005	1	40	593.213	-	-	7	1	1	SSPN|CCDS8707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSPN|CCDS8707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	7	10	10	43	27	43	27	10	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754968273	12	27031032	CT	C	300	PASS	-	-	-	-	-	Del	-	D	27031032	27031034	1	6	260.283	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	0	5	0	9	28	45	28	45	0	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754974595	12	47499151	C	CACAG	360	PASS	FAM113B	CCDS8752.1	r.?	-	-	Ins	intronic	I	47499151	47499158	4	16	309.45	-	-	1	1	1	FAM113B|CCDS8752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM113B|CCDS8752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	5	6	20	20	20	20	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754974938	12	48600817	A	AT	960	PASS	OR10AD1	CCDS31787.1	r.?	-	-	Ins	upstream	I	48600817	48600824	1	72	854.098	-	-	6	1	1	OR10AD1|CCDS31787.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	OR10AD1|CCDS31787.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	16	14	16	0	0	./.	5	11	10	13	23	29	23	29	10	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754978645	12	59097537	GT	G	480	PASS	-	-	-	-	-	Del	-	D	59097537	59097547	1	24	431.866	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	5	5	7	24	25	24	25	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754979666	12	62619423	GA	G	300	PASS	-	-	-	-	-	Del	-	D	62619423	62619432	1	10	269.916	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	1	5	4	26	18	26	18	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754985575	12	81536737	TG	T	1020	PASS	ACSS3	CCDS9022.1	r.?	-	-	Del	intronic	D	81536737	81536739	1	84	917.715	-	-	1	1	1	ACSS3|CCDS9022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACSS3|CCDS9022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	6	11	8	12	19	20	19	20	8	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754989474	12	94560826	G	GA	300	PASS	PLXNC1	CCDS9049.1	r.?	-	-	Ins	intronic	I	94560826	94560836	1	12	263.895	-	-	9	1	1	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	2	3	2	3	21	31	22	31	2	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754990707	12	97467387	CA	C	480	PASS	-	-	-	-	-	Del	-	D	97467387	97467390	1	24	431.866	-	-	2	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	8	4	30	20	30	20	8	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754992047	12	101672980	AT	A	540	PASS	UTP20	CCDS9081.1	r.?	-	-	Del	upstream	D	101672980	101672987	1	10	485.849	-	-	6	1	1	UTP20|CCDS9081.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	UTP20|CCDS9081.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	21	6	21	6	0	0	./.	9	0	10	1	16	4	16	4	10	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754993874	12	107103950	AT	A	840	PASS	RFX4	CCDS9106.1	r.?	-	-	Del	intronic	D	107103950	107103957	1	55	755.765	-	-	6	1	1	RFX4|CCDS9106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX4|CCDS9106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	10	4	10	4	32	17	32	17	10	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2754995881	12	113961222	TG	T	960	PASS	-	-	-	-	-	Del	-	D	113961222	113961225	1	72	863.731	-	-	2	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	11	5	18	9	25	24	25	24	18	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755000728	12	125955186	CA	C	329	PASS	TMEM132B	CCDS41859.1	r.?	-	-	Del	intronic	D	125955186	125955192	1	15	322.093	-	-	5	1	1	TMEM132B|CCDS41859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132B|CCDS41859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	5	4	22	29	22	30	5	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755015201	13	53810867	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	53810867	53810876	1	24	482.039	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	7	3	11	18	20	18	20	3	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755015617	13	55395839	TAAC	T	298	PASS	-	-	-	-	-	Del	-	D	55395839	55395855	3	12	324.972	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	5	3	9	16	18	16	18	3	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755015888	13	56114642	CA	C	300	PASS	-	-	-	-	-	Del	-	D	56114642	56114645	1	10	269.606	-	-	2	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	4	1	6	13	27	13	27	1	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755018745	13	65692375	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	65692375	65692383	1	27	535.599	-	-	7	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	8	3	9	8	16	8	16	3	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755018862	13	66171075	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	66171075	66171078	1	14	373.715	-	-	2	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	1	6	1	9	17	23	17	24	1	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755029272	13	99868315	T	TA	1200	PASS	UBAC2	CCDS9490.1	r.?	-	-	Ins	intronic	I	99868315	99868317	1	120	1070.6	-	-	1	1	1	UBAC2|CCDS9490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBAC2|CCDS9490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	9	11	22	19	36	28	36	28	22	19	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755029864	13	101164559	GCCATAAAATTA	G	319	PASS	PCCA	CCDS9496.2	r.?	-	-	Del	intronic	D	101164559	101164571	11	42	595.18	-	-	1	1	1	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	6	6	7	31	26	31	26	6	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755033773	13	112110588	GT	G	360	PASS	-	-	-	-	-	Del	-	D	112110588	112110590	1	16	321.359	-	-	1	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	3	3	4	6	20	27	20	27	4	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755037044	14	23836292	GACAC	G	329	PASS	EFS	CCDS9595.1	r.?	-	-	Del	upstream	D	23836292	23836302	4	15	320.62	-	-	4	1	1	EFS|CCDS9595.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	EFS|CCDS9595.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	3	5	15	27	15	27	3	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755037593	14	25380617	GGAA	G	720	PASS	STXBP6	CCDS9634.1	r.?	-	-	Del	intronic	D	25380617	25380628	3	45	648.466	-	-	3	1	1	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	4	8	6	10	25	33	25	33	6	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755038314	14	27519493	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	27519493	27519501	1	21	428.297	-	-	7	1	1	-	-	./.	0	0	0	0	19	16	20	16	0	0	./.	6	2	11	7	32	30	32	30	11	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755043783	14	42100469	CTG	C	360	PASS	LRFN5	CCDS9678.1	r.?	-	-	Del	intronic	D	42100469	42100475	2	12	324.835	-	-	2	1	1	LRFN5|CCDS9678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRFN5|CCDS9678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	1	5	4	22	25	22	25	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755044082	14	43020419	AG	A	360	PASS	-	-	-	-	-	Del	-	D	43020419	43020421	1	7	321.222	-	-	1	1	-	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	6	0	8	0	33	20	33	20	8	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755045741	14	48230769	GA	G	660	PASS	-	-	-	-	-	Del	-	D	48230769	48230775	1	40	595.531	-	-	5	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	4	7	5	9	28	29	28	29	5	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755057611	14	79511184	TC	T	300	PASS	NRXN3	CCDS9870.1	r.?	-	-	Del	intronic	D	79511184	79511186	1	6	262.267	-	-	1	1	1	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	0	8	0	18	25	18	25	8	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755057880	14	80316895	AT	A	480	PASS	NRXN3	CCDS45145.1	r.?	-	-	Del	intronic	D	80316895	80316900	1	24	431.307	-	-	4	1	1	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	5	5	6	27	24	27	24	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755059979	14	86389268	CT	C	420	PASS	-	-	-	-	-	Del	-	D	86389268	86389277	1	20	378.372	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	4	4	4	13	19	13	19	4	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755060597	14	88050517	AAAG	A	360	PASS	-	-	-	-	-	Del	-	D	88050517	88050529	3	12	324.835	-	-	3	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	1	5	1	8	29	35	29	35	1	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755063171	14	94986010	C	CTGGAGGTGGTGATGATGGAGATGATGGTGGTGATGGAAGTGGTGGTGGTGA	261	PASS	SERPINA12	CCDS9926.1	r.?	-	-	Ins	upstream	I	94986010	94986020	51	28	210.907	-	-	0	1	-	SERPINA12|CCDS9926.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	SERPINA12|CCDS9926.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	24	24	24	24	0	0	./.	3	6	0	0	48	33	50	37	3	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755069216	15	22459998	AT	A	360	PASS	-	-	-	-	-	Del	-	D	22459998	22460006	1	16	325.081	-	-	7	1	1	-	-	./.	0	0	0	0	33	33	33	33	0	0	./.	3	3	3	4	46	61	46	61	3	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755070764	15	26147447	TG	T	420	PASS	ENSG00000206187	ENST00000383019	r.?	-	-	Del	upstream	D	26147447	26147450	1	20	379.261	-	-	2	1	1	ENSG00000206187|ENST00000383019|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000206187|ENST00000383019|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	13	18	13	0	0	./.	4	3	6	5	23	24	23	24	6	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755071089	15	26957969	G	GAGCAGAT	348	PASS	GABRB3	CCDS10019.1	r.?	-	-	Ins	intronic	I	26957969	26957978	7	48	597.18	-	-	1	1	1	GABRB3|CCDS10019.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABRB3|CCDS10019.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	15	0	0	./.	5	7	5	7	25	27	25	27	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755077203	15	44160804	AAG	A	449	PASS	FRMD5	CCDS10107.2	r.?	-	-	Del	downstream	D	44160804	44160808	2	21	429.828	-	-	1	1	1	FRMD5|CCDS10107.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FRMD5|CCDS10107.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	24	15	24	15	0	0	./.	2	6	3	8	21	21	21	21	3	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755083781	15	62137973	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	62137973	62137982	1	63	746.48	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	15	0	0	./.	6	8	6	10	26	29	26	29	6	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755087491	15	71852558	CAG	C	600	PASS	THSD4	CCDS10238.2	r.?	-	-	Del	intronic	D	71852558	71852563	2	32	541.801	-	-	2	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	18	0	0	./.	3	7	4	9	21	21	21	23	4	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755088201	15	73580490	CTTG	C	569	PASS	NEO1	CCDS10247.1	r.?	-	-	Del	intronic	D	73580490	73580515	3	35	538.189	-	-	8	1	-	NEO1|CCDS10247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEO1|CCDS10247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	4	6	7	9	34	26	34	26	7	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755090522	15	80378374	TTTTA	T	420	PASS	ZFAND6	CCDS10313.1	r.?	-	-	Del	intronic	D	80378374	80378390	4	20	379.261	-	-	3	1	1	ZFAND6|CCDS10313.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZFAND6|CCDS10313.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	4	4	6	18	28	18	28	4	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755090606	15	80587077	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	80587077	80587084	2	12	270.901	-	-	3	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	2	4	2	22	26	22	26	4	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755093393	15	89283434	GGGGACAGAGAGG	GTT	261	PASS	-	-	-	-	-	Complex	-	DI	89283435	89283446	12	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	5	4	0	0	17	22	18	22	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755096667	15	97899907	AAT	A	478	PASS	-	-	-	-	-	Del	-	D	97899907	97899916	2	30	487.621	-	-	4	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	4	5	5	7	25	17	25	17	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755098786	16	998743	CGACAGAGTCAGAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGAGCCAATGACAGAGTCAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGAGCCAAGGACAGAGTCAGAGCCAACGACAGAGTCAGTCAACGACAGAGTCAGCCAACGACAGAGTCAGAGCCAACGACAGAGTCAGTCAATGACAGAGTCAGCCAACGACAGAGTCAGAGCCAACGACAGAGTCAGCCAACGACAGAGTCAGAGACAAT	C	305	PASS	LMF1	CCDS45373.1	r.?	-	-	Del	intronic	D	998743	999105	354	30	464.243	-	-	1	1	-	LMF1|CCDS45373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMF1|CCDS45373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	5	4	0	0	44	28	49	32	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755100178	16	4287339	GC	G	418	PASS	SRL	CCDS42113.1	r.?	-	-	Del	intronic	D	4287339	4287345	1	24	432.997	-	-	5	1	1	SRL|CCDS42113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRL|CCDS42113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	5	6	7	33	31	33	31	6	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755110201	16	26475136	T	TA	1380	PASS	-	-	-	-	-	Ins	-	I	26475136	26475142	1	154	1231.02	-	-	5	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	13	10	14	12	32	31	32	31	14	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755111137	16	28949279	ACTGAGCCCCATCCCCCATC	A	348	PASS	CD19	CCDS10644.1	r.?	-	-	Del	intronic	D	28949279	28949322	19	48	623.606	-	-	2	1	-	CD19|CCDS10644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD19|CCDS10644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	7	5	4	6	12	23	13	23	7	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755111408	16	29759105	GAACT	G	838	PASS	C16orf54	CCDS10652.1	r.?	-	-	Del	upstream	D	29759105	29759114	4	72	810.664	-	-	2	1	1	C16orf54|CCDS10652.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C16orf54|CCDS10652.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	15	8	15	0	0	./.	7	8	8	9	26	27	27	27	9	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755116133	16	49384042	GC	G	540	PASS	-	-	-	-	-	Del	-	D	49384042	49384046	1	30	478.692	-	-	3	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	4	5	7	35	30	35	30	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755116771	16	51215951	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	51215951	51215969	2	12	269.419	-	-	8	1	-	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	3	2	3	28	34	28	34	2	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755120814	16	62154088	CTTGA	C	449	PASS	-	-	-	-	-	Del	-	D	62154088	62154093	4	25	432.997	-	-	1	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	4	4	6	4	22	29	22	29	6	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755121699	16	64320166	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	64320166	64320176	1	6	263.398	-	-	9	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	0	5	1	5	60	42	61	42	1	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755122512	16	66547619	GGGAGTCTTACTTACCAGAACAGGGGCTGCCATGGGGAAAAGGCTGCCTTTGATGAGCCACTCCTCATGGAGATGGTGAATTGCTTCCAGGTATTCCTGCCAGGGAAACACAAGCAGTCTGTCGGGAGT	G	667	PASS	TK2	CCDS10805.1	r.970-33_1050+14del128	c.745-33_825+14del128	p.?	Del	ess splice	D	66547619	66547751	128	150	1237.04	-	-	1	1	1	TK2|CCDS10805.1|r.970-33_1050+14del128|c.745-33_825+14del128|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	TK2|CCDS10805.1|r.970-33_1050+14del128|c.745-33_825+14del128|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	12	14	12	14	0	0	./.	9	14	0	0	19	17	28	31	9	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755124752	16	73872615	C	CA	478	PASS	-	-	-	-	-	Ins	-	I	73872615	73872618	1	28	481.703	-	-	2	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	3	6	3	6	13	23	14	23	3	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755134918	17	13953041	CA	C	300	PASS	-	-	-	-	-	Del	-	D	13953041	13953045	1	10	271.099	-	-	3	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	1	4	1	6	12	26	12	26	1	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755140870	17	34490370	CT	C	522	PASS	TBC1D3B	CCDS42300.1	r.?	-	-	Del	downstream	D	34490370	34490374	1	19	974.752	-	-	3	1	1	TBC1D3B|CCDS42300.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TBC1D3B|CCDS42300.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	12	17	12	0	0	./.	18	0	22	0	47	9	47	9	22	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755143446	17	42063631	C	CA	480	PASS	PYY	CCDS32662.1	r.?	-	-	Ins	intronic	I	42063631	42063641	1	21	425.329	-	-	9	1	1	PYY|CCDS32662.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PYY|CCDS32662.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	6	4	10	18	21	18	21	4	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755143754	17	42797226	CAT	C	960	PASS	DBF4B	CCDS11485.1	r.?	-	-	Del	intronic	D	42797226	42797229	2	80	862.098	-	-	1	1	1	DBF4B|CCDS11485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DBF4B|CCDS11485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	7	9	13	10	24	19	24	19	13	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755147437	17	55707547	C	CG	420	PASS	MSI2	CCDS11597.1	r.?	-	-	Ins	intronic	I	55707547	55707553	1	8	370.508	-	-	5	1	1	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	7	0	11	0	21	11	21	11	11	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755149298	17	61841492	GTCACCA	G	551	PASS	CCDC47	CCDS11643.1	r.761_766delUGGUGA	c.425_430delTGGTGA	p.M142_V143delMV	Del	inframe	D	61841492	61841502	6	104	1030.18	-	-	1	1	1	CCDC47|CCDS11643.1|r.761_766delUGGUGA|c.425_430delTGGTGA|p.M142_V143delMV|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	CCDC47|CCDS11643.1|r.761_766delUGGUGA|c.425_430delTGGTGA|p.M142_V143delMV|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	22	9	22	9	0	0	./.	12	7	14	8	25	11	25	11	14	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755161559	18	18902457	TA	T	480	PASS	GREB1L	CCDS45836.1	r.?	-	-	Del	intronic	D	18902457	18902462	1	24	434.185	-	-	4	1	1	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	3	5	4	6	16	20	16	20	4	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755163606	18	26222281	CATGTTTTGAACCCAGAT	C	290	PASS	-	-	-	-	-	Del	-	D	26222281	26222299	17	32	542.731	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	7	3	6	3	16	14	17	14	7	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755164145	18	27885617	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	27885617	27885636	2	10	270.162	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	1	4	19	22	19	22	1	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755168199	18	44774049	GC	G	629	PASS	ENSG00000215474	ENST00000425639	r.1505delG	c.1505delG	p.S502fs*34	Del	frameshift	D	44774049	44774051	1	36	595.8	-	-	1	1	1	ENSG00000215474|ENST00000425639|r.1505delG|c.1505delG|p.S502fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ENSG00000215474|ENST00000425639|r.1505delG|c.1505delG|p.S502fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	20	14	20	14	0	0	./.	8	3	9	5	26	19	26	19	9	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755171611	18	55838630	CCCGCCTCATCACCCCAGCCCAAGAGGACAGAACACTGCTG	C	301	PASS	NEDD4L	CCDS45872.1	r.?	-	-	Del	intronic	D	55838630	55838673	40	12	325.639	-	-	1	1	1	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	4	15	4	0	0	./.	5	1	0	0	13	0	15	1	5	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755179521	19	3258676	CAT	C	360	PASS	CELF5	CCDS12106.1	r.?	-	-	Del	intronic	D	3258676	3258680	2	15	325.704	-	-	1	1	1	CELF5|CCDS12106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELF5|CCDS12106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	5	3	14	18	14	18	5	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755190683	19	35596836	A	ATTATCACCGCCGTGACCACGCCACCACCG	269	PASS	ENSG00000179066	ENST00000313865	r.?	-	-	Ins	upstream	I	35596836	35596845	29	10	177.499	-	-	0	1	-	ENSG00000179066|ENST00000313865|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000227392|ENST00000392227|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	19	9	0	0	./.	1	4	0	0	21	19	24	20	1	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755205918	2	24093544	G	GGT	269	PASS	ATAD2B	CCDS46227.1	r.?	-	-	Ins	intronic	I	24093544	24093545	2	12	261.868	-	-	0	1	1	ATAD2B|CCDS46227.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATAD2B|CCDS46227.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	5	14	7	0	0	./.	2	3	2	0	21	18	21	19	4	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755208348	2	31849405	GT	G	420	PASS	-	-	-	-	-	Del	-	D	31849405	31849413	1	18	376.128	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	2	5	5	6	12	19	12	19	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755210478	2	38277896	TTTG	T	540	PASS	FAM82A1	CCDS1792.1	r.?	-	-	Del	intronic	D	38277896	38277914	3	30	477.143	-	-	5	1	1	FAM82A1|CCDS1792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM82A1|CCDS1792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	4	5	7	6	14	18	14	18	7	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755213472	2	48557198	AAAAT	A	780	PASS	FOXN2	CCDS1838.1	r.?	-	-	Del	intronic	D	48557198	48557214	4	56	699.641	-	-	3	1	1	FOXN2|CCDS1838.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FOXN2|CCDS1838.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	7	6	9	9	15	19	15	19	9	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755213859	2	49987426	TTCA	T	958	PASS	-	-	-	-	-	Del	-	D	49987426	49987433	3	90	914.916	-	-	2	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	8	9	11	11	23	26	23	26	11	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755217436	2	64069127	GTTTC	G	780	PASS	UGP2	CCDS1875.1	r.285_288delUUUC	c.?	p.?	Del	5'UTR variant	D	64069127	64069143	4	50	695.427	-	-	3	1	1	UGP2|CCDS1875.1|r.285_288delUUUC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	UGP2|CCDS1875.1|r.285_288delUUUC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	5	21	5	21	0	0	./.	4	9	6	10	11	23	11	23	6	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755219327	2	70297446	TCTC	T	389	PASS	-	-	-	-	-	Del	-	D	70297446	70297450	3	20	376.73	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	4	7	7	14	14	14	14	7	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755222726	2	84877352	ACTT	A	600	PASS	DNAH6	CCDS46348.1	r.?	-	-	Del	intronic	D	84877352	84877360	3	36	538.186	-	-	2	1	1	DNAH6|CCDS46348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH6|CCDS46348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	5	5	7	7	13	15	13	15	7	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755235113	2	132395297	ATTACTTTTTAAAATGCAATTCAAAT	A	377	PASS	-	-	-	-	-	Del	-	D	132395297	132395324	25	56	696.029	-	-	1	1	1	-	-	./.	0	0	0	0	25	12	25	12	0	0	./.	7	6	6	4	16	12	17	14	7	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755236909	2	137558383	AT	A	749	PASS	THSD7B	ENST00000409968	r.?	-	-	Del	intronic	D	137558383	137558392	1	56	696.029	-	-	8	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	7	6	10	7	19	16	19	16	10	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755238019	2	141296112	TAAC	T	809	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141296112	141296120	3	60	753.46	-	-	2	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	9	5	9	12	18	12	18	5	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755240537	2	150827532	AC	A	525	PASS	-	-	-	-	-	Del	-	D	150827532	150827534	1	42	592.004	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	5	6	8	15	23	21	23	21	8	15	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755241912	2	155437034	AAG	A	689	PASS	-	-	-	-	-	Del	-	D	155437034	155437038	2	24	645.823	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	11	1	16	5	26	10	26	10	16	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755243050	2	159839278	CCTGA	C	749	PASS	TANC1	CCDS42766.1	r.?	-	-	Del	intronic	D	159839278	159839285	4	36	693.621	-	-	1	1	1	TANC1|CCDS42766.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TANC1|CCDS42766.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	24	6	24	0	0	./.	2	11	4	16	15	31	15	31	4	16	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755249568	2	182900388	G	GCT	480	PASS	PPP1R1C	CCDS46468.1	r.?	-	-	Ins	intronic	I	182900388	182900402	2	21	420.916	-	-	6	1	1	PPP1R1C|CCDS46468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP1R1C|CCDS46468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	13	0	0	./.	2	6	4	6	16	17	17	17	4	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755253374	2	196526052	T	TA	1109	PASS	SLC39A10	CCDS33353.1	r.?	-	-	Ins	intronic	I	196526052	196526059	1	108	1009.31	-	-	6	1	1	SLC39A10|CCDS33353.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SLC39A10|CCDS33353.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	11	8	15	14	28	23	29	23	15	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755265011	2	235021801	TG	T	569	PASS	-	-	-	-	-	Del	-	D	235021801	235021803	1	32	515.91	-	-	1	1	-	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	7	3	8	9	21	23	21	23	8	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755267250	20	522388	C	CT	360	PASS	CSNK2A1P	CCDS13003.1	r.?	-	-	Ins	intronic	I	522388	522397	1	16	322.118	-	-	8	1	1	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	4	5	29	20	30	23	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755271966	20	13181139	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	13181139	13181157	2	10	269.635	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	1	4	1	5	30	34	30	34	1	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755281960	20	41645714	C	CA	300	PASS	PTPRT	CCDS42874.1	r.?	-	-	Ins	intronic	I	41645714	41645723	1	12	268.431	-	-	8	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	3	2	5	5	27	24	27	24	5	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755284804	20	48900661	G	GA	1140	PASS	-	-	-	-	-	Ins	-	I	48900661	48900662	1	104	1020.04	-	-	0	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	12	7	15	12	43	33	43	34	15	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755285989	20	51512330	GAGA	G	476	PASS	-	-	-	-	-	Del	-	D	51512330	51512339	3	35	542.281	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	4	9	4	33	23	33	23	9	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755286931	20	53583205	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	53583205	53583207	1	9	429.49	-	-	1	1	1	-	-	./.	0	0	0	0	21	25	21	25	0	0	./.	8	0	11	10	33	27	33	27	11	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755288396	20	57749336	AG	A	360	PASS	-	-	-	-	-	Del	-	D	57749336	57749339	1	15	325.73	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	4	2	4	4	29	21	29	21	4	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755298164	21	25495796	AT	A	840	PASS	-	-	-	-	-	Del	-	D	25495796	25495804	1	63	761.015	-	-	7	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	6	8	7	10	20	25	20	25	7	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755298442	21	26243103	TA	T	780	PASS	-	-	-	-	-	Del	-	D	26243103	26243105	1	54	706.657	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	8	5	8	7	23	24	23	24	8	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755303726	21	39868780	G	GA	720	PASS	ERG	CCDS13657.1	r.?	-	-	Ins	intronic	I	39868780	39868789	1	40	645.074	-	-	8	1	1	ERG|CCDS13657.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ERG|CCDS13657.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	9	3	9	4	26	24	26	24	9	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755309932	22	24140084	GTGTGAACCACCACACC	G	261	PASS	SMARCB1	CCDS13817.1	r.?	-	-	Del	intronic	D	24140084	24140103	16	30	491.382	-	-	1	1	1	SMARCB1|CCDS13817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCB1|CCDS13817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	5	4	5	23	29	23	29	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755311488	22	29217025	CAAAG	C	687	PASS	-	-	-	-	-	Del	-	D	29217025	29217035	4	56	709.172	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	7	8	7	16	16	16	16	9	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755318437	22	50702331	CCA	C	360	PASS	MAPK11	CCDS14090.1	r.2240_2241delUG	c.?	p.?	Del	3'UTR variant	D	50702331	50702336	2	15	324.578	-	-	2	1	1	MAPK11|CCDS14090.1|r.2240_2241delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MAPK11|CCDS14090.1|r.2240_2241delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	4	5	11	18	11	18	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755321810	3	9035869	AAGGGAAGTT	A	290	PASS	SRGAP3	CCDS33689.1	r.?	-	-	Del	intronic	D	9035869	9035881	9	20	538.395	-	-	1	1	1	SRGAP3|CCDS33689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRGAP3|CCDS33689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	1	9	1	9	13	23	13	23	1	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755327024	3	24894083	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	24894083	24894093	1	12	266.187	-	-	9	1	1	-	-	./.	0	0	0	0	20	14	21	14	0	0	./.	3	2	3	2	39	36	41	37	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755340657	3	67810694	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	67810694	67810704	1	12	266.187	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	2	3	30	40	30	41	2	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755341191	3	69369729	C	CA	780	PASS	FRMD4B	CCDS46863.1	r.?	-	-	Ins	intronic	I	69369729	69369736	1	54	692.086	-	-	6	1	1	FRMD4B|CCDS46863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FRMD4B|CCDS46863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	8	7	10	25	39	25	39	7	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755343120	3	75419775	GAGA	G	538	PASS	-	-	-	-	-	Del	-	D	75419775	75419781	3	32	538.395	-	-	1	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	7	3	9	6	23	30	23	30	9	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755344175	3	75836896	T	TCTTATGTTAAAGTTA	270	PASS	ZNF717	CCDS46871.1	r.?	-	-	Ins	upstream	I	75836896	75836898	15	11	448.086	-	-	0	1	1	ZNF717|CCDS46871.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZNF717|CCDS46871.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	14	19	14	0	0	./.	10	0	11	0	53	69	55	69	12	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755349702	3	95422659	AACTC	A	269	PASS	-	-	-	-	-	Del	-	D	95422659	95422671	4	12	269.197	-	-	2	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	7	6	23	32	23	32	7	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755349751	3	95552715	CT	C	780	PASS	-	-	-	-	-	Del	-	D	95552715	95552724	1	54	699.913	-	-	8	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	8	5	9	9	26	39	26	39	9	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755350255	3	97652120	GAGTCTTACATTCCT	G	261	PASS	CRYBG3	CCDS43113.1	r.?	-	-	Del	intronic	D	97652120	97652138	14	30	484.555	-	-	1	1	1	CRYBG3|CCDS43113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRYBG3|CCDS43113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	5	4	5	4	29	24	29	24	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755358559	3	121492165	A	AG	300	PASS	IQCB1	CCDS33837.1	r.?	-	-	Ins	intronic	I	121492165	121492166	1	10	263.177	-	-	0	1	-	IQCB1|CCDS33837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IQCB1|CCDS33837.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	11	0	0	./.	4	1	6	1	19	23	19	25	6	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755362743	3	134717985	A	AC	660	PASS	EPHB1	CCDS46921.1	r.?	-	-	Ins	intronic	I	134717985	134717990	1	42	585.612	-	-	4	1	1	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	6	5	8	6	29	40	29	40	8	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755364217	3	139020037	TCA	T	540	PASS	MRPS22	CCDS3107.1	r.?	-	-	Del	intronic	D	139020037	139020042	2	28	483.953	-	-	2	1	1	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	6	4	7	32	25	32	25	4	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755364623	3	140507030	TA	T	300	PASS	-	-	-	-	-	Del	-	D	140507030	140507040	1	12	269.197	-	-	9	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	2	3	3	3	20	30	20	30	3	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755365452	3	142729825	C	CT	540	PASS	SR140	CCDS46928.1	r.?	-	-	Ins	intronic	I	142729825	142729834	1	30	461.075	-	-	8	1	1	SR140|CCDS46928.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SR140|CCDS46928.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	23	22	23	0	0	./.	4	5	7	11	20	40	20	41	7	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755369615	3	154823567	TA	T	360	PASS	MME	CCDS3172.1	r.?	-	-	Del	intronic	D	154823567	154823574	1	15	323.037	-	-	6	1	1	MME|CCDS3172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MME|CCDS3172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	2	4	4	27	29	27	29	4	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755373186	3	166342320	AG	A	780	PASS	-	-	-	-	-	Del	-	D	166342320	166342324	1	54	699.913	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	8	5	9	6	28	26	28	26	9	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755373278	3	166528081	AT	A	600	PASS	-	-	-	-	-	Del	-	D	166528081	166528090	1	35	538.395	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	6	7	6	25	29	25	29	7	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755379690	3	186337079	CTG	C	600	PASS	AHSG	CCDS3278.1	r.?	-	-	Del	intronic	D	186337079	186337083	2	32	537.793	-	-	1	1	1	AHSG|CCDS3278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHSG|CCDS3278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	3	7	3	9	20	36	20	36	3	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755381279	3	190581898	TG	T	540	PASS	ENSG00000205835	ENST00000442080	r.?	-	-	Del	upstream	D	190581898	190581900	1	28	483.953	-	-	1	1	1	ENSG00000205835|ENST00000442080|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000205835|ENST00000442080|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	22	15	22	15	0	0	./.	6	3	7	4	21	26	21	26	7	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755381306	3	190659429	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	190659429	190659439	1	12	266.187	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	12	16	0	0	./.	2	3	3	3	25	28	25	28	3	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755382399	3	193854999	T	TC	1200	PASS	HES1	CCDS3305.1	r.?	-	-	Ins	intronic	I	193854999	193855002	1	117	1062.34	-	-	2	1	1	HES1|CCDS3305.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HES1|CCDS3305.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	8	12	12	14	34	38	34	38	12	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755384885	4	2376175	T	TA	300	PASS	ZFYVE28	CCDS33942.1	r.?	-	-	Ins	intronic	I	2376175	2376185	1	10	262.981	-	-	9	1	1	ZFYVE28|CCDS33942.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFYVE28|CCDS33942.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	1	4	42	39	42	39	1	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755385500	4	3657688	T	TGCTAA	298	PASS	-	-	-	-	-	Ins	-	I	3657688	3657697	5	15	304.139	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	4	30	26	31	26	2	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755388106	4	11222213	AT	A	480	PASS	-	-	-	-	-	Del	-	D	11222213	11222215	1	25	430.403	-	-	1	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	4	4	6	6	27	30	27	30	6	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755388790	4	13254219	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	13254219	13254227	1	30	478.785	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	5	4	8	22	28	23	28	4	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755389552	4	15771369	GA	G	600	PASS	-	-	-	-	-	Del	-	D	15771369	15771377	1	36	538.004	-	-	7	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	5	5	7	7	27	23	27	23	7	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755389709	4	16199142	CA	C	1289	PASS	TAPT1	CCDS47030.1	r.?	-	-	Del	intronic	D	16199142	16199148	1	143	1181.8	-	-	5	1	1	TAPT1|CCDS47030.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAPT1|CCDS47030.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	10	12	11	13	36	41	36	41	11	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755395853	4	34357691	ACT	A	389	PASS	-	-	-	-	-	Del	-	D	34357691	34357696	2	20	376.603	-	-	2	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	3	4	4	4	30	33	30	33	4	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755397211	4	38298729	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	38298729	38298738	1	24	425.587	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	7	8	22	24	22	24	7	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755399568	4	43358778	AAAAT	A	300	PASS	-	-	-	-	-	Del	-	D	43358778	43358798	4	10	269.002	-	-	4	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	1	5	3	18	20	18	20	5	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755400518	4	46419504	AC	A	360	PASS	GABRA2	ENST00000510861	r.?	-	-	Del	intronic	D	46419504	46419512	1	15	322.802	-	-	7	1	1	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	10	21	10	0	0	./.	2	4	3	6	17	22	17	22	3	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755400562	4	46723190	GA	G	457	PASS	-	-	-	-	-	Del	-	D	46723190	46723200	1	24	430.403	-	-	9	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	5	3	10	6	27	32	27	32	10	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755403094	4	54972437	AT	A	660	PASS	GSX2	CCDS3494.1	r.?	-	-	Del	downstream	D	54972437	54972445	1	30	589.998	-	-	7	1	1	GSX2|CCDS3494.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	9	4	14	22	40	22	40	4	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755405391	4	60776055	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	60776055	60776065	1	10	264.186	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	4	1	4	1	31	26	31	26	4	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755406788	4	64340478	TG	T	569	PASS	-	-	-	-	-	Del	-	D	64340478	64340482	1	27	538.004	-	-	3	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	2	8	4	8	20	34	20	34	4	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755407851	4	67271429	AT	A	600	PASS	-	-	-	-	-	Del	-	D	67271429	67271439	1	35	537.402	-	-	9	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	6	4	8	6	24	16	24	16	8	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755407939	4	67520971	CT	C	780	PASS	-	-	-	-	-	Del	-	D	67520971	67520981	1	36	699.405	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	11	2	11	6	35	22	35	22	11	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755414936	4	88277588	AT	A	480	PASS	HSD17B11	CCDS3619.1	r.?	-	-	Del	intronic	D	88277588	88277591	1	25	430.403	-	-	2	1	1	HSD17B11|CCDS3619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HSD17B11|CCDS3619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	4	5	6	22	25	22	25	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755415601	4	90217415	GA	G	660	PASS	GPRIN3	CCDS34030.1	r.?	-	-	Del	intronic	D	90217415	90217425	1	40	591.805	-	-	9	1	1	GPRIN3|CCDS34030.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GPRIN3|CCDS34030.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	7	4	8	6	25	26	25	26	8	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755420836	4	107606019	CCT	C	396	PASS	-	-	-	-	-	Del	-	D	107606019	107606022	2	18	376.603	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	11	17	0	0	./.	2	5	5	9	21	31	21	31	5	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755422852	4	113824690	GA	G	300	PASS	ANK2	ENST00000506722	r.?	-	-	Del	intronic	D	113824690	113824696	1	10	269.002	-	-	5	1	1	ANK2|ENST00000506722|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANK2|ENST00000506722|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	1	4	5	4	28	40	28	40	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755423331	4	115194327	TA	T	480	PASS	-	-	-	-	-	Del	-	D	115194327	115194331	1	24	430.403	-	-	3	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	3	8	6	21	25	21	25	8	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755423691	4	116215802	AAT	A	389	PASS	-	-	-	-	-	Del	-	D	116215802	116215806	2	18	376.603	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	5	2	6	20	31	20	31	2	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755427712	4	127683574	TGCAC	T	749	PASS	-	-	-	-	-	Del	-	D	127683574	127683579	4	50	699.405	-	-	1	1	1	-	-	./.	0	0	0	0	25	18	25	18	0	0	./.	4	9	4	10	29	26	29	26	4	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755429673	4	132929346	GA	G	420	PASS	-	-	-	-	-	Del	-	D	132929346	132929352	1	14	376.603	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	6	2	12	11	27	11	27	2	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755434266	4	146658532	TAAATAAAG	T	261	PASS	C4orf51	CCDS47140.1	r.?	-	-	Del	downstream	D	146658532	146658543	8	30	484.204	-	-	1	1	1	C4orf51|CCDS47140.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C4orf51|CCDS47140.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	19	25	19	25	0	0	./.	5	4	7	4	36	30	36	30	7	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755435588	4	150798186	ACT	A	360	PASS	-	-	-	-	-	Del	-	D	150798186	150798192	2	16	322.802	-	-	2	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	4	3	26	25	26	25	4	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755446497	4	180500693	GT	G	540	PASS	-	-	-	-	-	Del	-	D	180500693	180500698	1	24	483.602	-	-	4	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	2	7	3	8	16	23	16	23	3	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755453208	5	2448695	TA	T	360	PASS	-	-	-	-	-	Del	-	D	2448695	2448697	1	15	318.67	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	5	4	43	33	43	33	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755462764	5	26863707	TAG	T	480	PASS	-	-	-	-	-	Del	-	D	26863707	26863713	2	24	431.316	-	-	2	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	3	5	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755462934	5	27367778	AG	A	600	PASS	-	-	-	-	-	Del	-	D	27367778	27367780	1	36	536.134	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	5	5	9	10	24	36	24	36	9	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755463001	5	27553396	CAGA	C	567	PASS	-	-	-	-	-	Del	-	D	27553396	27553400	3	42	593.059	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	5	6	6	23	17	23	17	6	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755463369	5	28551151	TC	T	1200	PASS	-	-	-	-	-	Del	-	D	28551151	28551155	1	96	1074.68	-	-	3	1	1	-	-	./.	0	0	0	0	24	12	24	12	0	0	./.	5	15	6	16	23	35	23	35	6	16	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755465009	5	32455990	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	32455990	32456009	2	7	323.487	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	6	0	8	0	31	20	31	20	8	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755465541	5	33870897	TAA	T	540	PASS	ADAMTS12	ENST00000504830	r.?	-	-	Del	intronic	D	33870897	33870902	2	28	485.23	-	-	4	1	1	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	6	3	6	33	36	33	36	3	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755468254	5	41518123	CT	C	420	PASS	-	-	-	-	-	Del	-	D	41518123	41518132	1	20	377.401	-	-	8	1	1	-	-	./.	0	0	0	0	27	5	27	5	0	0	./.	4	3	7	4	35	29	35	29	7	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755468302	5	41672766	TC	T	389	PASS	-	-	-	-	-	Del	-	D	41672766	41672772	1	18	376.197	-	-	5	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	2	5	3	8	20	27	20	27	3	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755470278	5	51355467	AT	A	319	PASS	ENSG00000248789	ENST00000510583	r.?	-	-	Del	intronic	D	51355467	51355474	1	18	481.618	-	-	6	1	1	ENSG00000248789|ENST00000510583|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000248789|ENST00000510583|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	8	1	10	3	51	29	51	29	10	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755470552	5	52129358	AC	A	1260	PASS	ITGA1	CCDS3955.1	r.?	-	-	Del	intronic	D	52129358	52129361	1	120	1132.2	-	-	2	1	1	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	14	7	19	8	41	30	41	30	19	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755471315	5	53850578	T	TA	1620	PASS	-	-	-	-	-	Ins	-	I	53850578	53850585	1	204	1437.63	-	-	6	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	16	11	22	12	51	24	52	26	22	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755472022	5	55241451	ACTT	A	298	PASS	IL6ST	CCDS3971.1	r.?	-	-	Del	intronic	D	55241451	55241456	3	12	309.639	-	-	1	1	1	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	24	9	24	0	0	./.	5	1	6	10	25	42	26	42	7	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755474366	5	61310360	CA	C	600	PASS	-	-	-	-	-	Del	-	D	61310360	61310370	1	35	539.145	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	4	8	6	45	44	45	44	8	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755476112	5	65277913	TTTAGA	T	420	PASS	ERBB2IP	CCDS34172.1	r.?	-	-	Del	intronic	D	65277913	65277924	5	14	377.401	-	-	2	1	1	ERBB2IP|CCDS34172.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ERBB2IP|CCDS34172.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	1	6	5	6	43	30	43	30	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755476843	5	68076076	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	68076076	68076084	1	30	473.189	-	-	7	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	5	6	6	16	17	16	17	6	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755478549	5	75278580	CATAT	C	1645	PASS	-	-	-	-	-	Del	-	D	75278580	75278588	4	240	1617.43	-	-	3	1	1	-	-	./.	0	0	0	0	10	27	10	27	0	0	./.	19	11	26	12	58	43	58	43	26	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755479198	5	76439417	GA	G	1289	PASS	-	-	-	-	-	Del	-	D	76439417	76439421	1	128	1181.3	-	-	3	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	7	15	21	19	42	38	42	38	21	19	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755479554	5	77486205	TGACAAGTGAAGGGTG	T	406	PASS	AP3B1	CCDS4041.1	r.?	-	-	Del	intronic	D	77486205	77486224	15	63	754.803	-	-	1	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	8	6	8	6	42	36	42	36	8	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755479617	5	77667957	CT	C	840	PASS	-	-	-	-	-	Del	-	D	77667957	77667959	1	60	754.803	-	-	1	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	9	5	9	9	32	23	32	23	9	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755480351	5	79626255	TG	T	300	PASS	-	-	-	-	-	Del	-	D	79626255	79626257	1	6	259.939	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	0	6	0	23	16	23	16	6	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755486177	5	104010814	GT	G	960	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Del	intronic	D	104010814	104010819	1	81	861.427	-	-	4	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	8	8	8	13	15	20	15	20	8	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755486913	5	107178932	GT	G	749	PASS	-	-	-	-	-	Del	-	D	107178932	107178942	1	56	700.888	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	7	6	11	10	25	22	25	22	11	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755487256	5	108650871	GA	G	720	PASS	-	-	-	-	-	Del	-	D	108650871	108650878	1	49	643.963	-	-	6	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	6	6	11	14	22	24	22	24	11	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755487260	5	108684982	GTTTAAATAC	G	580	PASS	PJA2	CCDS4099.1	r.?	-	-	Del	intronic	D	108684982	108684995	9	112	1078.29	-	-	1	1	1	PJA2|CCDS4099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PJA2|CCDS4099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	9	23	9	0	0	./.	13	7	18	7	21	15	22	15	19	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755488652	5	114610107	A	AT	300	PASS	CCDC112	CCDS34213.1	r.?	-	-	Ins	intronic	I	114610107	114610117	1	12	262.95	-	-	9	1	1	CCDC112|CCDS34213.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC112|CCDS34213.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	3	2	3	2	29	20	29	20	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755493446	5	132461085	CA	C	660	PASS	-	-	-	-	-	Del	-	D	132461085	132461089	1	42	593.059	-	-	3	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	5	9	8	23	15	23	15	9	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755496033	5	141938192	GTCAGACCTTTTTTTTTTTTTT	G	290	PASS	-	-	-	-	-	Del	-	D	141938192	141938215	21	35	536.134	-	-	1	1	-	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	4	6	4	4	7	10	7	12	4	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755497287	5	146901617	TA	T	600	PASS	-	-	-	-	-	Del	-	D	146901617	146901625	1	32	539.145	-	-	7	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	7	3	8	5	23	19	23	19	8	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755502240	5	165000952	CT	C	360	PASS	-	-	-	-	-	Del	-	D	165000952	165000959	1	12	323.487	-	-	6	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	5	1	5	2	20	18	20	18	5	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755502448	5	165808985	GTCTTT	G	991	PASS	ENSG00000229119	ENST00000449646	r.?	-	-	Del	upstream	D	165808985	165808997	5	96	970.46	-	-	2	1	1	ENSG00000229119|ENST00000449646|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000229119|ENST00000449646|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	18	16	18	0	0	./.	11	7	12	7	21	10	21	10	12	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755503356	5	169044705	G	GAT	300	PASS	-	-	-	-	-	Ins	-	I	169044705	169044724	2	10	263.552	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	1	4	24	31	24	31	1	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755509381	6	5962141	AG	A	960	PASS	AL136307.1	ENST00000510466	r.?	-	-	Del	intronic	D	5962141	5962143	1	80	861.952	-	-	1	1	1	AL136307.1|ENST00000510466|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL136307.1|ENST00000510466|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	9	7	10	9	29	25	29	25	10	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755510357	6	7864391	TTC	T	987	PASS	BMP6	CCDS4503.1	r.?	-	-	Del	intronic	D	7864391	7864395	2	99	968.492	-	-	1	1	1	BMP6|CCDS4503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMP6|CCDS4503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	8	10	13	11	32	35	32	35	13	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755511132	6	9616571	AG	A	420	PASS	ENSG00000228565	ENST00000455975	r.?	-	-	Del	intronic	D	9616571	9616575	1	20	377.104	-	-	3	1	1	ENSG00000228565|ENST00000455975|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000228565|ENST00000455975|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	4	3	6	5	26	31	26	31	6	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755517197	6	24592233	ATGT	A	1138	PASS	KIAA0319	CCDS34348.1	r.?	-	-	Del	intronic	D	24592233	24592240	3	112	1077.44	-	-	2	1	1	KIAA0319|CCDS34348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0319|CCDS34348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	7	13	10	14	30	35	30	35	10	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755518242	6	27572238	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	27572238	27572239	1	12	265.145	-	-	0	1	1	-	-	./.	0	0	0	0	11	11	12	11	0	0	./.	3	2	3	3	38	29	38	29	3	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755518527	6	28844452	GT	G	720	PASS	-	-	-	-	-	Del	-	D	28844452	28844454	1	40	645.862	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	9	3	13	37	34	37	34	3	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755518703	6	29609949	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	29609949	29609953	2	10	269.36	-	-	3	1	-	-	-	./.	0	0	0	0	20	23	20	23	0	0	./.	1	4	1	6	25	39	25	39	1	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755526145	6	46294375	TC	T	420	PASS	RCAN2	CCDS43469.1	r.?	-	-	Del	upstream	D	46294375	46294377	1	20	377.104	-	-	1	1	1	RCAN2|CCDS43469.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RCAN2|ENST00000371374|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	3	9	8	37	33	37	33	9	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755526878	6	48374736	CA	C	329	PASS	-	-	-	-	-	Del	-	D	48374736	48374744	1	15	312.997	-	-	7	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	4	2	4	4	21	18	21	18	4	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755526895	6	48432461	GA	G	360	PASS	-	-	-	-	-	Del	-	D	48432461	48432469	1	7	322.63	-	-	7	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	6	0	6	1	29	17	29	17	6	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755527198	6	49463026	TA	T	540	PASS	CENPQ	CCDS4925.1	r.?	-	-	Del	downstream	D	49463026	49463029	1	28	484.246	-	-	2	1	1	CENPQ|CCDS4925.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GLYATL3|CCDS47440.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	7	16	7	0	0	./.	6	3	9	8	26	23	26	23	9	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755535353	6	73441661	A	AT	540	PASS	KCNQ5	CCDS4976.1	r.?	-	-	Ins	intronic	I	73441661	73441663	1	30	471	-	-	1	1	1	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	5	5	7	24	36	25	36	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755535844	6	74493142	TA	T	929	PASS	CD109	CCDS4982.1	r.?	-	-	Del	intronic	D	74493142	74493149	1	80	860.748	-	-	6	1	1	CD109|CCDS4982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD109|CCDS4982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	9	7	12	7	30	26	30	26	12	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755537419	6	79358601	CT	C	274	PASS	-	-	-	-	-	Del	-	D	79358601	79358604	1	16	323.232	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	4	5	29	36	29	36	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755538738	6	83374919	GAC	G	360	PASS	-	-	-	-	-	Del	-	D	83374919	83374927	2	15	316.007	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	4	2	25	14	25	14	4	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755540098	6	87713524	C	CA	420	PASS	HTR1E	CCDS5006.1	r.?	-	-	Ins	intronic	I	87713524	87713532	1	20	372.889	-	-	7	1	1	HTR1E|CCDS5006.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HTR1E|CCDS5006.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	19	28	20	0	0	./.	3	4	5	5	25	30	26	30	5	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755541165	6	90271084	CT	C	1049	PASS	ANKRD6	CCDS47460.1	r.?	-	-	Del	intronic	D	90271084	90271086	1	96	961.267	-	-	1	1	1	ANKRD6|CCDS47460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANKRD6|CCDS47460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	11	7	13	10	36	29	36	29	13	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755542689	6	95448592	AC	A	660	PASS	-	-	-	-	-	Del	-	D	95448592	95448594	1	42	592.592	-	-	1	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	5	6	9	8	31	23	31	23	9	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755542744	6	95845836	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	95845836	95845837	1	12	265.145	-	-	0	1	1	-	-	./.	0	0	0	0	13	12	15	12	0	0	./.	3	2	4	6	30	29	30	29	4	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755543552	6	98284971	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	98284971	98284980	1	72	798.447	-	-	8	1	1	-	-	./.	0	0	0	0	16	24	17	24	0	0	./.	7	8	7	15	22	44	22	44	7	15	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755549014	6	113795666	CT	C	420	PASS	-	-	-	-	-	Del	-	D	113795666	113795674	1	18	377.104	-	-	7	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	5	2	5	4	29	21	29	21	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755550640	6	118713178	TG	T	1020	PASS	-	-	-	-	-	Del	-	D	118713178	118713180	1	70	912.211	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	4	13	8	17	30	41	30	41	8	17	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755550667	6	118815238	GA	G	900	PASS	C6orf204	CCDS43498.1	r.?	-	-	Del	intronic	D	118815238	118815246	1	72	808.08	-	-	7	1	1	C6orf204|CCDS43498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf204|CCDS43498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	7	8	13	14	28	39	28	39	13	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755551994	6	122243225	AC	A	720	PASS	-	-	-	-	-	Del	-	D	122243225	122243227	1	45	645.862	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	8	10	10	20	34	20	34	10	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755553423	6	126997753	CA	C	518	PASS	-	-	-	-	-	Del	-	D	126997753	126997760	1	60	754.208	-	-	6	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	9	5	10	6	25	24	27	24	12	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755560961	6	152271165	TAGTG	T	1169	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152271165	152271173	4	117	1076.24	-	-	1	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	8	12	10	14	26	29	26	29	10	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755565639	6	165546459	G	GAT	360	PASS	-	-	-	-	-	Ins	-	I	165546459	165546461	2	16	316.007	-	-	0	1	-	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	3	5	5	24	22	24	22	5	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755585440	7	54090764	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	54090764	54090765	1	20	371.988	-	-	0	1	1	-	-	./.	0	0	0	0	14	14	14	15	0	0	./.	3	4	5	7	26	28	27	28	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755586035	7	55694840	C	CA	509	PASS	-	-	-	-	-	Ins	-	I	55694840	55694845	1	24	469.583	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	7	4	11	22	30	23	30	4	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755589944	7	66744167	TC	T	265	PASS	-	-	-	-	-	Del	-	D	66744167	66744171	1	12	315.062	-	-	3	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	1	5	1	14	15	14	15	5	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755590306	7	67437961	TA	T	360	PASS	-	-	-	-	-	Del	-	D	67437961	67437968	1	16	323.491	-	-	6	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	3	3	7	3	21	10	21	10	7	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755602504	7	104580353	CCCTT	C	778	PASS	-	-	-	-	-	Del	-	D	104580353	104580359	4	55	752.404	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	10	4	13	8	20	17	20	17	13	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755609333	7	126641562	C	CA	600	PASS	GRM8	CCDS5794.1	r.?	-	-	Ins	intronic	I	126641562	126641569	1	36	531.325	-	-	6	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	5	5	9	7	24	30	24	31	9	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755613171	7	136316207	CTT	C	540	PASS	-	-	-	-	-	Del	-	D	136316207	136316210	2	28	485.237	-	-	2	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	6	3	7	3	29	26	29	26	7	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755615317	7	141888241	T	TA	269	PASS	ENSG00000204987	ENST00000477922	r.?	-	-	Ins	intronic	I	141888241	141888251	1	10	266.566	-	-	9	1	1	ENSG00000204987|ENST00000477922|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000204987|ENST00000477922|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	1	4	1	5	28	33	28	34	1	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755615337	7	141933260	CT	C	540	PASS	-	-	-	-	-	Del	-	D	141933260	141933270	1	30	482.226	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	5	4	5	31	30	31	30	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755617946	7	149225619	CCCTGAGTGAATACTCTTTTCTCCATTT	C	261	PASS	-	-	-	-	-	Del	-	D	149225619	149225647	27	28	485.237	-	-	1	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	3	6	1	4	18	18	20	20	3	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755620496	7	155162065	TA	T	300	PASS	BLACE	ENST00000378120	r.?	-	-	Del	upstream	D	155162065	155162067	1	12	268.372	-	-	1	1	1	BLACE|ENST00000378120|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	BLACE|ENST00000378120|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	6	3	25	25	25	25	6	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755626421	8	13644712	AAAT	A	449	PASS	-	-	-	-	-	Del	-	D	13644712	13644719	3	9	430.984	-	-	2	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	0	8	1	10	8	19	8	19	1	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755630245	8	25932666	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	25932666	25932675	1	45	639.251	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	8	4	10	4	21	17	21	17	10	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755631168	8	28536961	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	28536961	28536970	1	10	266.355	-	-	8	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	1	4	2	5	12	22	12	22	2	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755633660	8	35708057	TG	T	1483	PASS	-	-	-	-	-	Del	-	D	35708057	35708059	1	240	1616.19	-	-	1	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	19	11	23	14	50	32	50	32	23	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755634231	8	37387082	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	37387082	37387099	2	10	268.763	-	-	8	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	1	4	1	49	43	49	43	4	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755635497	8	38906536	TA	T	420	PASS	ADAM9	CCDS6112.1	r.?	-	-	Del	intronic	D	38906536	38906538	1	8	371.09	-	-	1	1	1	ADAM9|CCDS6112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM9|CCDS6112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	24	9	24	0	0	./.	7	0	24	0	86	71	86	71	24	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755638111	8	47166632	GC	G	720	PASS	-	-	-	-	-	Del	-	D	47166632	47166642	1	48	644.67	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	7	14	14	32	38	32	38	14	14	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755639693	8	51550675	GGAA	G	298	PASS	SNTG1	CCDS6147.1	r.?	-	-	Del	intronic	D	51550675	51550687	3	15	323.238	-	-	3	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	5	3	29	27	29	27	5	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755640209	8	53049330	G	GA	360	PASS	ST18	CCDS6149.1	r.?	-	-	Ins	intronic	I	53049330	53049340	1	7	316.615	-	-	9	1	1	ST18|CCDS6149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ST18|CCDS6149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	0	6	0	8	43	71	43	71	0	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755642826	8	59804602	GA	G	360	PASS	TOX	CCDS34897.1	r.?	-	-	Del	intronic	D	59804602	59804612	1	12	323.238	-	-	9	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	1	5	5	8	36	36	36	36	5	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755646385	8	70402578	CCACCCGCCTTGGCCTCCAAAGCA	C	348	PASS	SULF1	CCDS6204.1	r.?	-	-	Del	upstream	D	70402578	70402603	23	45	646.476	-	-	1	1	1	SULF1|CCDS6204.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SULF1|CCDS6204.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	8	4	7	4	15	21	16	21	8	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755648178	8	74617556	AT	A	300	PASS	STAU2	CCDS6214.1	r.?	-	-	Del	intronic	D	74617556	74617566	1	10	268.763	-	-	9	1	1	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	1	4	1	4	42	54	42	54	1	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755649983	8	78690524	GATAAT	G	292	PASS	-	-	-	-	-	Del	-	D	78690524	78690532	5	30	484.857	-	-	1	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	4	5	4	5	39	49	39	49	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755650172	8	79102252	A	AT	1800	PASS	-	-	-	-	-	Ins	-	I	79102252	79102261	1	252	1593.31	-	-	8	1	1	-	-	./.	0	0	0	0	22	16	23	16	0	0	./.	17	13	23	24	56	57	56	58	23	24	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755651356	8	81868357	G	GA	300	PASS	AC012533.1	ENST00000501214	r.?	-	-	Ins	downstream	I	81868357	81868367	1	10	265.151	-	-	9	1	1	AC012533.1|ENST00000501214|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	AC012533.1|ENST00000501214|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	12	13	12	14	0	0	./.	4	1	4	1	54	40	54	40	4	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755654215	8	88912139	C	CA	960	PASS	-	-	-	-	-	Ins	-	I	88912139	88912148	1	80	852.335	-	-	8	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	7	9	8	11	51	48	51	48	8	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755656542	8	95352918	A	AAG	470	PASS	-	-	-	-	-	Ins	-	I	95352918	95352920	2	36	496.586	-	-	0	1	-	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	5	5	7	16	35	51	35	51	7	16	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755662970	8	109106993	GTAAA	G	689	PASS	-	-	-	-	-	Del	-	D	109106993	109107006	4	40	646.476	-	-	3	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	3	9	5	10	50	42	50	42	5	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755663164	8	109582815	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	109582815	109582835	2	10	260.936	-	-	9	1	1	-	-	./.	0	0	0	0	20	23	20	23	0	0	./.	1	4	1	5	53	43	53	43	1	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755665564	8	116462349	TGTGTAAC	T	464	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116462349	116462358	7	77	861.968	-	-	1	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	10	6	12	7	27	27	27	27	12	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755667078	8	120379819	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	120379819	120379829	1	12	266.355	-	-	9	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	3	2	3	4	61	57	61	57	3	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755668359	8	123130419	AAC	A	298	PASS	-	-	-	-	-	Del	-	D	123130419	123130439	2	7	316.615	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	0	6	2	6	65	42	65	42	2	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755668939	8	124369963	AAAAC	A	836	PASS	ATAD2	CCDS6343.1	r.1500_1503delGUUU	c.1392_1395delGTTT	p.L464fs*27	Del	frameshift	D	124369963	124369974	4	72	861.968	-	-	2	1	1	ATAD2|CCDS6343.1|r.1500_1503delGUUU|c.1392_1395delGTTT|p.L464fs*27|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ATAD2|CCDS6343.1|r.1500_1503delGUUU|c.1392_1395delGTTT|p.L464fs*27|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	17	10	17	0	0	./.	5	11	7	12	51	56	51	56	7	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755670652	8	128105671	AG	A	300	PASS	-	-	-	-	-	Del	-	D	128105671	128105673	1	12	269.365	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	4	5	51	52	51	52	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755670949	8	128883205	GCCT	G	300	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128883205	128883225	3	6	269.365	-	-	6	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	0	5	0	34	21	34	21	5	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755676181	8	142010129	AG	A	300	PASS	PTK2	CCDS6381.1	r.?	-	-	Del	intronic	D	142010129	142010131	1	6	268.763	-	-	1	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	5	0	11	0	44	32	44	32	11	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755676529	8	143089951	ACACACACACACCCATCACCACACACAGACACACCACACCCACCATGCAGGCACCTACTGTGTGTGCACACACACCCATCACCCACACACAGACACACCACACCCACCGTGCAGGCACCTACTGTGTG	A	261	PASS	-	-	-	-	-	Del	-	D	143089951	143090088	127	30	468.601	-	-	1	1	-	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	5	4	0	0	57	43	57	43	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755677425	8	145231746	AG	A	300	PASS	HEATR7A	CCDS47938.1	r.?	-	-	Del	intronic	D	145231746	145231748	1	6	259.13	-	-	1	1	1	HEATR7A|CCDS47938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HEATR7A|CCDS47938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	10	26	11	0	0	./.	5	0	11	0	64	30	64	30	11	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755678612	9	3135886	GA	G	269	PASS	-	-	-	-	-	Del	-	D	3135886	3135894	1	10	270.614	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	6	1	20	8	20	8	6	1	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755680454	9	9906577	GAC	G	660	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9906577	9906583	2	42	595.351	-	-	2	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	6	21	6	0	0	./.	5	6	5	6	23	24	23	24	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755684418	9	24220209	GA	G	960	PASS	-	-	-	-	-	Del	-	D	24220209	24220217	1	72	865.364	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	11	7	13	10	26	10	26	7	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755687363	9	33824480	C	CA	300	PASS	UBE2R2	CCDS6546.1	r.?	-	-	Ins	intronic	I	33824480	33824488	1	12	265.196	-	-	7	1	1	UBE2R2|CCDS6546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2R2|CCDS6546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	7	4	25	17	25	17	7	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755693308	9	73489767	T	TA	600	PASS	TRPM3	CCDS43835.1	r.?	-	-	Ins	intronic	I	73489767	73489777	1	35	534.606	-	-	9	1	1	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	4	6	6	11	18	22	18	22	6	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755693480	9	74130466	GA	G	660	PASS	-	-	-	-	-	Del	-	D	74130466	74130472	1	22	595.351	-	-	5	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	10	1	11	5	18	19	18	19	11	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755701460	9	103704659	CT	C	480	PASS	-	-	-	-	-	Del	-	D	103704659	103704663	1	25	432.983	-	-	3	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	4	4	5	18	23	18	23	4	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755704341	9	114088419	TCATCTACATTAGGTATTTCTCCCAATGCTAGCGTTAAGTAATCCAAAACTCAACATCTAATGCTAAAACTTTTAAAGTATTTTATATTTTTAATTTGTCCAGTGAGTTTA	T	319	PASS	OR2K2	CCDS6778.1	r.?	-	-	Del	downstream	D	114088419	114088533	110	42	594.749	-	-	1	1	1	OR2K2|CCDS6778.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR2K2|CCDS6778.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	20	11	20	11	0	0	./.	6	5	0	0	11	5	17	10	6	5	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755705879	9	118812519	CA	C	360	PASS	-	-	-	-	-	Del	-	D	118812519	118812529	1	15	324.737	-	-	9	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	4	2	6	3	24	14	24	14	6	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755707155	9	123897321	TC	T	1109	PASS	CEP110	CCDS35118.1	r.?	-	-	Del	intronic	D	123897321	123897323	1	110	1028.33	-	-	1	1	1	CEP110|CCDS35118.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP110|CCDS35118.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	9	10	12	13	16	31	16	31	12	13	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755711794	9	139329472	GCTCTCCAGGAACACAA	GCTGT	406	PASS	INPP5E	CCDS7000.1	r.?	-	-	Complex	intronic	DI	139329473	139329488	16	63	0	-	-	0	1	1	INPP5E|CCDS7000.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	INPP5E|CCDS7000.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	6	8	0	0	13	10	13	10	6	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755712270	9	141071520	GTGTCTCAGAGCAGTTTACAGCAA	G	261	PASS	-	-	-	-	-	Del	-	D	141071520	141071547	23	10	487.106	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	9	0	9	0	27	30	27	30	9	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755713142	X	4854939	TA	T	900	PASS	-	-	-	-	-	Del	-	D	4854939	4854947	1	66	808.377	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	10	5	13	9	32	46	32	46	13	9	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755714045	X	7883359	GT	G	360	PASS	PNPLA4	CCDS14129.1	r.?	-	-	Del	intronic	D	7883359	7883361	1	7	322.508	-	-	1	1	1	PNPLA4|CCDS14129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PNPLA4|CCDS14129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	6	0	11	0	30	17	30	17	11	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755715155	X	11816436	AT	A	660	PASS	-	-	-	-	-	Del	-	D	11816436	11816440	1	36	593.974	-	-	3	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	8	3	10	7	32	23	32	23	10	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755716325	X	15997302	AACTTCATC	A	261	PASS	-	-	-	-	-	Del	-	D	15997302	15997314	8	30	486.471	-	-	1	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	5	4	5	4	34	26	34	26	5	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755721608	X	35271912	A	AT	1380	PASS	-	-	-	-	-	Ins	-	I	35271912	35271918	1	156	1229.36	-	-	5	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	11	12	16	12	33	33	34	33	16	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755721787	X	35962305	CTG	C	840	PASS	CXorf22	CCDS14237.2	r.?	-	-	Del	intronic	D	35962305	35962309	2	64	756.733	-	-	1	1	1	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	7	7	9	11	25	25	25	25	9	11	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755722672	X	40370866	A	ATATT	389	PASS	-	-	-	-	-	Ins	-	I	40370866	40370886	4	18	361.509	-	-	4	1	1	-	-	./.	0	0	0	0	24	21	24	21	0	0	./.	5	2	5	3	38	37	39	37	5	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755726358	X	53713019	ATG	A	300	PASS	HUWE1	CCDS35301.1	r.?	-	-	Del	upstream	D	53713019	53713035	2	12	269.66	-	-	7	1	1	HUWE1|CCDS35301.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	HUWE1|CCDS35301.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	26	15	26	0	0	./.	3	2	3	2	24	33	24	33	3	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755726719	X	54751786	TC	T	1166	PASS	-	-	-	-	-	Del	-	D	54751786	54751791	1	120	1081.05	-	-	4	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	9	11	11	12	38	28	38	28	11	12	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755727677	X	62521712	AG	A	720	PASS	-	-	-	-	-	Del	-	D	62521712	62521718	1	49	648.628	-	-	5	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	6	6	8	10	31	30	31	30	8	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755728193	X	65454870	GC	G	840	PASS	HEPH	CCDS14384.2	r.?	-	-	Del	intronic	D	65454870	65454874	1	64	756.733	-	-	3	1	1	HEPH|CCDS14384.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HEPH|CCDS14384.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	7	7	14	10	35	25	35	25	14	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755728932	X	68396170	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	68396170	68396175	1	42	587.953	-	-	4	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	5	6	5	6	36	38	37	39	5	6	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755729743	X	70869110	ACTTGCT	A	261	PASS	-	-	-	-	-	Del	-	D	70869110	70869120	6	30	486.471	-	-	1	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	4	5	3	7	19	21	20	22	4	8	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755733455	X	85037336	GA	G	600	PASS	-	-	-	-	-	Del	-	D	85037336	85037344	1	35	540.524	-	-	7	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	6	4	8	10	27	34	27	34	8	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755736018	X	94399433	AC	A	420	PASS	-	-	-	-	-	Del	-	D	94399433	94399435	1	20	378.367	-	-	1	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	4	3	6	4	24	24	24	24	6	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755737438	X	99869183	GTTTT	G	569	PASS	-	-	-	-	-	Del	-	D	99869183	99869191	4	35	540.524	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	6	4	7	4	19	32	19	32	7	4	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755737605	X	100314533	GA	G	540	PASS	-	-	-	-	-	Del	-	D	100314533	100314542	1	30	486.471	-	-	8	1	1	-	-	./.	0	0	0	0	22	21	22	21	0	0	./.	4	5	8	7	35	35	35	35	8	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755744391	X	125545335	AC	A	480	PASS	-	-	-	-	-	Del	-	D	125545335	125545337	1	24	432.419	-	-	1	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	3	5	5	7	18	26	18	26	5	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755746167	X	133111409	CCTT	C	958	PASS	GPC3	CCDS14638.1	r.?	-	-	Del	intronic	D	133111409	133111415	3	84	918.288	-	-	1	1	1	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	11	6	12	7	28	19	29	19	13	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755746192	X	133176489	CT	C	300	PASS	-	-	-	-	-	Del	-	D	133176489	133176499	1	12	267.252	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	4	3	28	24	28	24	4	3	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755746927	X	135799943	TGTATA	T	687	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Del	intronic	D	135799943	135799953	5	44	700.875	-	-	1	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	10	4	10	22	23	22	23	4	10	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755747856	X	139136136	G	GC	360	PASS	-	-	-	-	-	Ins	-	I	139136136	139136144	1	15	320.702	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	2	5	2	26	21	28	21	5	2	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755751056	X	151028493	TC	T	329	PASS	-	-	-	-	-	Del	-	D	151028493	151028495	1	7	314.681	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	0	6	0	28	24	28	24	6	0	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755751176	X	151579087	AATT	A	540	PASS	GABRA3	CCDS14706.1	r.?	-	-	Del	intronic	D	151579087	151579095	3	28	486.471	-	-	2	1	1	GABRA3|CCDS14706.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABRA3|CCDS14706.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	6	7	7	16	22	16	22	7	7	1	1	1	1	1	1	1	1
2772590	PD7308a	PD7308b	2755751478	X	153000622	CTTGATGGACATT	C	319	PASS	ABCD1	CCDS14728.1	r.?	-	-	Del	intronic	D	153000622	153000638	12	40	594.576	-	-	1	1	1	ABCD1|CCDS14728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCD1|CCDS14728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	4	7	4	8	33	31	33	31	4	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756841342	1	27105930	T	TG	720	PASS	ARID1A	CCDS285.1	r.5912_5913insg	c.5541_5542insG	p.D1850fs*4	Ins	frameshift	I	27105930	27105938	1	48	637.401	-	-	7	1	1	ARID1A|CCDS285.1|r.5912_5913insg|c.5541_5542insG|p.D1850fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ARID1A|CCDS285.1|r.5912_5913insg|c.5541_5542insG|p.D1850fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	9	9	9	9	0	0	./.	7	5	11	7	26	15	26	15	11	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756849512	1	63110702	T	TA	780	PASS	DOCK7	CCDS30734.1	r.?	-	-	Ins	intronic	I	63110702	63110711	1	56	691.171	-	-	8	1	1	DOCK7|CCDS30734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK7|CCDS30734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	6	7	6	8	19	15	20	15	6	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756853135	1	79305393	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	79305393	79305401	1	28	478.503	-	-	7	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	3	6	4	8	10	13	10	13	4	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756859912	1	107354009	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	107354009	107354019	1	32	530.466	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	9	0	0	./.	3	7	5	7	14	19	14	19	5	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756862153	1	117026688	GCAGGAGGGGGAGGGCTCCAGGAAA	G	377	PASS	-	-	-	-	-	Del	-	D	117026688	117026714	24	54	698.395	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	8	4	7	16	21	17	22	5	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756862532	1	118688875	ACT	A	480	PASS	SPAG17	CCDS899.1	r.?	-	-	Del	intronic	D	118688875	118688883	2	16	430.152	-	-	3	1	1	SPAG17|CCDS899.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG17|CCDS899.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	7	1	8	2	27	22	27	22	8	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756863857	1	142634650	CCTT	C	307	PASS	-	-	-	-	-	Del	-	D	142634650	142634656	3	11	532.272	-	-	1	1	-	-	-	./.	0	0	0	0	48	54	48	54	0	0	./.	10	0	12	0	147	148	147	148	12	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756864100	1	142808281	AAG	A	270	PASS	-	-	-	-	-	Del	-	D	142808281	142808286	2	14	698.997	-	-	2	1	1	-	-	./.	0	0	0	0	144	102	144	102	0	0	./.	13	0	12	0	168	89	170	89	14	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756872945	1	166247043	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	166247043	166247052	1	30	478.503	-	-	8	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	4	5	8	10	33	49	33	50	8	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756876952	1	178984642	A	AG	509	PASS	-	-	-	-	-	Ins	-	I	178984642	178984644	1	24	477.299	-	-	1	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	2	7	5	8	22	40	22	40	5	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756886719	1	208358093	T	TAC	300	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Ins	intronic	I	208358093	208358112	2	12	259.814	-	-	9	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	3	2	5	3	35	48	36	50	5	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756891449	1	222991031	CT	C	720	PASS	-	-	-	-	-	Del	-	D	222991031	222991035	1	48	645.228	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	7	6	9	25	26	25	26	6	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756893432	1	228043671	GC	G	420	PASS	-	-	-	-	-	Del	-	D	228043671	228043675	1	18	376.383	-	-	3	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	2	6	4	23	23	23	23	6	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756893601	1	228806423	CCCCACTCAAATCTCATGTCGAGTTGTGAT	C	319	PASS	-	-	-	-	-	Del	-	D	228806423	228806453	29	36	591.459	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	8	2	6	31	31	32	33	3	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756893669	1	229070648	C	CTGGGTACT	261	PASS	-	-	-	-	-	Ins	-	I	229070648	229070657	8	30	440.573	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	4	5	4	30	27	30	27	5	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756898985	1	242788981	C	CA	900	PASS	-	-	-	-	-	Ins	-	I	242788981	242788990	1	70	797.505	-	-	8	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	9	6	11	10	52	33	54	33	11	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756904183	10	7047066	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	7047066	7047075	1	15	319.879	-	-	8	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	4	2	4	4	34	38	34	38	4	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756916184	10	42421720	AGGCATTGCCTCATTCGGGAAGTGCAAGG	A	357	PASS	-	-	-	-	-	Del	-	D	42421720	42421751	28	54	695.48	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	8	3	7	15	28	17	29	5	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756916999	10	43690067	C	CA	457	PASS	RASGEF1A	CCDS7202.2	r.3151_3152insu	c.?	p.?	Ins	3'UTR variant	I	43690067	43690069	1	24	426.506	-	-	1	1	1	RASGEF1A|CCDS7202.2|r.3151_3152insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	RASGEF1A|CCDS7202.2|r.3151_3152insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	7	11	7	11	0	0	./.	3	5	4	6	27	36	28	36	4	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756927791	10	82786271	TAAC	T	540	PASS	-	-	-	-	-	Del	-	D	82786271	82786280	3	18	485.238	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	8	1	10	7	18	7	18	1	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756928182	10	84360083	G	GA	660	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	84360083	84360092	1	42	585.844	-	-	8	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	25	11	25	0	0	./.	5	6	7	7	24	28	24	28	7	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756930903	10	94123056	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	94123056	94123061	1	25	423.496	-	-	4	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	4	7	4	31	29	31	29	7	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756939046	10	120406676	G	GT	260	PASS	-	-	-	-	-	Ins	-	I	120406676	120406686	1	28	479.819	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	6	5	9	29	38	30	38	5	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756950935	11	21707490	A	AAAATC	261	PASS	-	-	-	-	-	Ins	-	I	21707490	21707494	5	10	458.798	-	-	0	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	9	0	9	0	41	19	41	20	9	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756955410	11	35636456	T	TG	300	PASS	FJX1	CCDS44570.1	r.?	-	-	Ins	upstream	I	35636456	35636464	1	12	260.641	-	-	7	1	1	FJX1|CCDS44570.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FJX1|CCDS44570.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	2	7	23	30	23	30	2	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756958204	11	44971931	CGG	C	1020	PASS	TP53I11	CCDS7911.1	r.?	-	-	Del	intronic	D	44971931	44971937	2	84	911.105	-	-	5	1	1	TP53I11|CCDS7911.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TP53I11|CCDS7911.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	11	6	15	9	48	24	48	24	15	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756958532	11	46261928	AC	A	360	PASS	-	-	-	-	-	Del	-	D	46261928	46261932	1	16	324.329	-	-	3	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	3	3	6	6	17	17	17	17	6	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756961026	11	56899943	CCAGCACTTTG	C	464	PASS	-	-	-	-	-	Del	-	D	56899943	56899954	10	80	861.867	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	9	7	10	26	28	26	28	7	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756961249	11	57600412	ATGGGTACACCAAGTT	A	435	PASS	-	-	-	-	-	Del	-	D	57600412	57600429	15	66	809.016	-	-	1	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	5	10	4	10	12	25	13	25	5	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756962280	11	61259492	G	GGACT	534	PASS	C11orf66	CCDS8008.1	r.?	-	-	Ins	downstream	I	61259492	61259498	4	45	599.891	-	-	1	1	1	C11orf66|CCDS8008.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C11orf66|CCDS8008.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	11	8	11	0	0	./.	4	8	3	8	26	33	27	33	4	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756965218	11	70318103	TG	T	900	PASS	SHANK2	ENST00000338508	r.6402delC	c.?	p.?	Del	3'UTR variant	D	70318103	70318106	1	72	810.822	-	-	2	1	1	SHANK2|ENST00000338508|r.6402delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SHANK2|ENST00000338508|r.6402delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	10	14	10	0	0	./.	8	7	9	9	36	23	36	23	9	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756967144	11	76803921	GA	G	600	PASS	CAPN5	CCDS8248.1	r.?	-	-	Del	intronic	D	76803921	76803923	1	36	533.925	-	-	1	1	1	CAPN5|CCDS8248.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPN5|CCDS8248.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	5	8	8	39	41	39	41	8	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756976364	11	110728927	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	110728927	110728936	1	42	583.164	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	5	8	6	23	14	24	14	8	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756977196	11	114003391	AGCAAC	A	689	PASS	ZBTB16	CCDS8367.1	r.?	-	-	Del	intronic	D	114003391	114003398	5	49	648.658	-	-	1	1	1	ZBTB16|CCDS8367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZBTB16|CCDS8367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	6	6	7	6	21	12	21	12	7	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756994989	12	39127374	TA	T	720	PASS	CPNE8	CCDS8733.1	r.?	-	-	Del	intronic	D	39127374	39127376	1	33	648.495	-	-	1	1	1	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	10	2	12	3	28	8	28	8	12	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2756997922	12	49744714	CTAT	C	323	PASS	DNAJC22	CCDS8785.1	r.?	-	-	Del	intronic	D	49744714	49744721	3	15	324.248	-	-	2	1	1	DNAJC22|CCDS8785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC22|CCDS8785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	2	4	2	5	6	26	6	26	2	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757007129	12	83393401	AAG	A	300	PASS	TMTC2	CCDS9025.1	r.?	-	-	Del	intronic	D	83393401	83393421	2	12	264.186	-	-	9	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	2	3	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757014837	12	109914679	TCATTTTCCAC	T	377	PASS	UBE3B	CCDS9129.1	r.?	-	-	Del	upstream	D	109914679	109914691	10	50	700.128	-	-	1	1	1	UBE3B|CCDS9129.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KCTD10|CCDS9128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	9	5	8	18	28	18	29	5	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757016268	12	115316209	T	TCCTTATTTCCTTCCTCCCTC	261	PASS	-	-	-	-	-	Ins	-	I	115316209	115316214	20	24	378.001	-	-	0	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	2	7	0	0	9	22	11	25	2	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757016619	12	116453841	ATT	A	660	PASS	MED13L	CCDS9177.1	r.?	-	-	Del	intronic	D	116453841	116453846	2	42	594.454	-	-	4	1	1	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	6	5	7	10	22	21	22	21	7	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757017003	12	117430704	C	CT	900	PASS	FBXW8	CCDS9182.1	r.?	-	-	Ins	intronic	I	117430704	117430711	1	72	800.986	-	-	6	1	1	FBXW8|CCDS9182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXW8|CCDS9182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	3	11	3	0	0	./.	7	8	13	8	20	23	21	24	13	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757021891	12	130256969	AG	A	929	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Del	intronic	D	130256969	130256976	1	80	864.66	-	-	6	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	7	9	10	13	24	27	24	27	10	13	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757032461	13	51393295	AT	A	660	PASS	DLEU7	ENST00000400393	r.?	-	-	Del	intronic	D	51393295	51393301	1	42	597.115	-	-	5	1	1	DLEU7|ENST00000400393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLEU7|ENST00000400393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	6	5	9	19	18	19	18	5	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757048418	13	113986597	G	GCACACGCACGCCACACACAGGTACACACGTGCA	300	PASS	GRTP1	CCDS9534.2	r.?	-	-	Ins	intronic	I	113986597	113986603	33	10	172.076	-	-	0	1	-	GRTP1|CCDS9534.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRTP1|CCDS9534.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	1	0	0	43	29	48	30	4	1	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757049338	14	20724414	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	20724414	20724431	2	12	271.059	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	3	3	29	29	29	29	3	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757051536	14	27582048	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	27582048	27582055	1	6	268.048	-	-	6	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	0	5	0	7	8	22	8	22	0	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757053023	14	32542871	TAA	T	660	PASS	ARHGAP5	CCDS32062.1	r.?	-	-	Del	upstream	D	32542871	32542875	2	40	596.329	-	-	3	1	1	ARHGAP5|CCDS32062.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ARHGAP5|CCDS32062.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	10	13	10	0	0	./.	7	4	9	4	27	18	27	18	9	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757054328	14	36113111	TG	T	600	PASS	RALGAPA1	CCDS32065.1	r.?	-	-	Del	intronic	D	36113111	36113116	1	35	542.117	-	-	4	1	1	RALGAPA1|CCDS32065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGAPA1|CCDS32065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	4	6	10	13	23	43	23	43	10	13	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757064474	14	68949887	GTACCACTTCC	G	493	PASS	RAD51L1	CCDS9789.1	r.?	-	-	Del	intronic	D	68949887	68949899	10	70	918.589	-	-	1	1	1	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	3	10	3	0	0	./.	13	4	14	4	31	25	31	25	14	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757067532	14	77846388	C	CA	300	PASS	C14orf174	CCDS32126.1	r.?	-	-	Ins	intronic	I	77846388	77846396	1	12	268.048	-	-	7	1	1	C14orf174|CCDS32126.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C14orf174|CCDS32126.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	15	10	0	0	./.	3	2	6	5	25	23	25	24	6	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757069274	14	84013956	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	84013956	84013959	2	6	265.038	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	0	7	2	23	13	23	13	7	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757072180	14	93337010	TACTC	T	585	PASS	-	-	-	-	-	Del	-	D	93337010	93337018	4	54	704.752	-	-	1	1	1	-	-	./.	0	0	0	0	5	14	5	16	0	0	./.	5	8	6	10	22	27	22	30	6	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757073233	14	96858208	A	ACCC	269	PASS	AK7	CCDS9945.1	r.?	-	-	Ins	upstream	I	96858208	96858215	3	6	257.211	-	-	6	1	-	AK7|CCDS9945.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	AK7|CCDS9945.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	4	9	4	9	0	0	./.	0	5	0	6	9	26	9	26	0	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757078804	15	26514273	CT	C	360	PASS	-	-	-	-	-	Del	-	D	26514273	26514281	1	15	326.097	-	-	7	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	2	4	7	5	13	13	13	13	7	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757085809	15	55786646	GTTGCGCAGGCTGGAGTGCAGTGGTGAGATCTCAGCTCGCTGCAACCTCCACCACCCGGGT	G	377	PASS	DYX1C1	CCDS10154.1	r.?	-	-	Del	intronic	D	55786646	55786708	60	26	706.544	-	-	1	1	1	DYX1C1|CCDS10154.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DYX1C1|CCDS10154.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	2	24	2	0	0	./.	12	1	0	0	9	6	21	7	12	1	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757088125	15	64641478	T	TG	420	PASS	CSNK1G1	CCDS10192.2	r.?	-	-	Ins	intronic	I	64641478	64641481	1	20	376.232	-	-	2	1	1	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	4	7	8	22	16	22	16	7	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757091418	15	77410246	A	AT	540	PASS	ENSG00000173517	CCDS42062.1	r.?	-	-	Ins	intronic	I	77410246	77410252	1	30	483.125	-	-	5	1	1	ENSG00000173517|CCDS42062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000173517|CCDS42062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	11	0	0	./.	4	5	5	5	14	17	14	17	5	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757098413	16	2178705	TC	T	486	PASS	PKD1	CCDS32369.1	r.?	-	-	Del	intronic	D	2178705	2178708	1	30	487.252	-	-	2	1	1	PKD1|CCDS32369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKD1|CCDS32369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	10	8	29	22	29	22	10	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757099075	16	4065975	AT	A	300	PASS	ADCY9	CCDS32382.1	r.?	-	-	Del	intronic	D	4065975	4065977	1	10	271.03	-	-	1	1	1	ADCY9|CCDS32382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY9|CCDS32382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	1	5	24	23	24	23	1	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757110870	16	34290830	G	GT	480	PASS	CCNYL3	ENST00000407030	r.?	-	-	Ins	intronic	I	34290830	34290839	1	21	427.025	-	-	8	1	1	CCNYL3|ENST00000407030|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCNYL3|ENST00000407030|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	10	19	11	0	0	./.	6	2	6	3	16	10	16	10	6	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757115927	16	63518445	C	CT	332	PASS	-	-	-	-	-	Ins	-	I	63518445	63518454	1	14	373.421	-	-	8	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	1	6	1	7	6	26	6	26	1	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757116975	16	68849477	AC	A	660	PASS	CDH1	CCDS10869.1	r.1572delC	c.1381delC	p.P461fs*20	Del	frameshift	D	68849477	68849480	1	42	596.266	-	-	2	1	1	CDH1|CCDS10869.1|r.1572delC|c.1381delC|p.P461fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CDH1|CCDS10869.1|r.1572delC|c.1381delC|p.P461fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	5	12	5	0	0	./.	5	6	6	8	21	23	21	23	6	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757145756	17	66437351	C	CT	600	PASS	WIPI1	CCDS11677.1	r.?	-	-	Ins	intronic	I	66437351	66437353	1	32	529.034	-	-	1	1	1	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	3	7	7	9	21	27	23	28	7	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757152862	18	3863815	CA	C	540	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Del	intronic	D	3863815	3863817	1	28	487.059	-	-	1	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	6	5	7	24	35	24	35	5	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757154267	18	8920371	G	GAAATAATC	290	PASS	-	-	-	-	-	Ins	-	I	8920371	8920381	8	32	494.35	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	7	3	7	3	24	33	24	33	7	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757157553	18	21107362	CA	C	300	PASS	NPC1	CCDS11878.1	r.?	-	-	Del	downstream	D	21107362	21107372	1	12	259.818	-	-	9	1	1	NPC1|CCDS11878.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C18orf8|CCDS32803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	3	2	17	22	17	22	3	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757157708	18	21694215	A	AAGGAGAAGGCGGGTGCGAGCTGAGCCCTTAACACCTGAGCAAAGGAGAGAACGCTGG	360	PASS	TTC39C	CCDS45839.1	r.?	-	-	Ins	intronic	I	21694215	21694225	57	15	119.604	-	-	0	1	1	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	0	0	31	32	31	32	2	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757157709	18	21694231	T	TGAGCTGAGCCCTTAACACCTGAGCAAAGGAGAGAACGCTGGAGGAGAAGGCGGGTGC	360	PASS	TTC39C	CCDS45839.1	r.?	-	-	Ins	intronic	I	21694231	21694285	57	16	119.604	-	-	0	1	1	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	3	0	0	41	51	41	51	3	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757161751	18	37538827	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	37538827	37538842	2	12	269.451	-	-	7	1	-	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	9	8	27	30	27	30	9	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757166603	18	54607599	TTTACAATAGACCTTGTATCCTA	T	348	PASS	WDR7	CCDS11962.1	r.?	-	-	Del	intronic	D	54607599	54607623	22	48	651.018	-	-	1	1	1	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	7	5	7	15	25	15	25	5	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757167439	18	57086131	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	57086131	57086139	1	28	482.845	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	6	5	8	19	28	19	29	5	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757179222	19	11817446	TC	T	360	PASS	-	-	-	-	-	Del	-	D	11817446	11817448	1	7	310.935	-	-	1	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	6	0	8	0	24	22	24	22	8	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757188652	19	38509412	AC	A	960	PASS	SIPA1L3	CCDS33007.1	r.?	-	-	Del	intronic	D	38509412	38509415	1	80	867.691	-	-	2	1	1	SIPA1L3|CCDS33007.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SIPA1L3|CCDS33007.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	7	9	10	10	24	28	24	28	10	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757196715	19	58699485	CT	C	300	PASS	ZNF274	ENST00000326804	r.?	-	-	Del	intronic	D	58699485	58699495	1	12	271.153	-	-	9	1	1	ZNF274|ENST00000326804|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF274|ENST00000326804|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	15	5	15	0	0	./.	3	2	3	2	20	28	20	28	3	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757199265	2	8714015	CAGCCTGGGA	C	551	PASS	-	-	-	-	-	Del	-	D	8714015	8714026	9	110	1020.44	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	9	10	10	10	30	28	30	28	10	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757208711	2	40499733	GC	G	480	PASS	SLC8A1	CCDS1806.1	r.?	-	-	Del	intronic	D	40499733	40499736	1	24	430.674	-	-	2	1	1	SLC8A1|CCDS1806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC8A1|CCDS1806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	5	3	5	4	26	25	26	25	5	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757212855	2	55577517	T	TA	540	PASS	CCDC88A	CCDS33203.1	r.?	-	-	Ins	intronic	I	55577517	55577521	1	24	479.089	-	-	3	1	1	CCDC88A|CCDS33203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC88A|CCDS33203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	10	2	10	0	0	./.	2	7	3	10	5	14	5	14	3	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757213427	2	57862863	G	GGA	360	PASS	-	-	-	-	-	Ins	-	I	57862863	57862866	2	15	315.781	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	2	4	3	5	17	13	17	14	3	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757213467	2	58118560	CAATGGTGAATAGGGCTGTGTTACATGTCTGCATTCTGGGCCTTTAGAGACTG	C	290	PASS	-	-	-	-	-	Del	-	D	58118560	58118613	52	35	537.138	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	6	0	1	17	13	21	18	4	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757213468	2	58124651	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	58124651	58124657	1	49	638.184	-	-	5	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	6	6	6	9	18	22	18	22	6	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757214948	2	64493049	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	64493049	64493066	2	12	269.171	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	2	2	31	27	31	27	2	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757216171	2	68765719	CTA	C	360	PASS	APLF	CCDS1888.1	r.?	-	-	Del	intronic	D	68765719	68765724	2	16	323.005	-	-	2	1	1	APLF|CCDS1888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APLF|CCDS1888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	5	4	13	18	13	18	5	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757221699	2	91745516	T	TAGGGCCAGGGCAGGGC	272	PASS	-	-	-	-	-	Ins	-	I	91745516	91745533	16	19	793.214	-	-	1	1	-	-	-	./.	0	0	0	0	29	40	30	41	0	0	./.	0	18	0	7	100	129	104	134	0	18	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757230010	2	125206943	C	CA	480	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Ins	intronic	I	125206943	125206952	1	24	424.653	-	-	8	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	3	5	9	7	25	19	26	20	9	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757245264	2	180195989	AC	A	300	PASS	-	-	-	-	-	Del	-	D	180195989	180195992	1	12	269.171	-	-	2	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	2	3	4	6	22	28	22	28	4	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757247164	2	187882481	AT	A	1020	PASS	-	-	-	-	-	Del	-	D	187882481	187882489	1	90	915.182	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	9	8	10	10	25	21	25	21	10	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757250860	2	201607735	ACC	A	300	PASS	-	-	-	-	-	Del	-	D	201607735	201607741	2	10	268.569	-	-	5	1	-	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	4	1	7	3	19	22	19	23	7	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757251737	2	204416647	GC	G	629	PASS	-	-	-	-	-	Del	-	D	204416647	204416649	1	30	590.972	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	9	2	11	4	21	6	21	6	11	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757253659	2	211596196	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	211596196	211596198	1	24	425.857	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	3	5	4	7	23	26	23	26	4	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757261369	2	238695805	CACTCCTA	C	319	PASS	-	-	-	-	-	Del	-	D	238695805	238695816	7	30	591.574	-	-	1	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	9	2	11	2	28	14	28	14	11	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757261392	2	238774723	TATTAACTGGTCAGGGAGG	T	290	PASS	RAMP1	CCDS2522.1	r.?	-	-	Del	intronic	D	238774723	238774746	18	35	537.74	-	-	1	1	1	RAMP1|CCDS2522.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAMP1|CCDS2522.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	6	4	6	4	21	31	21	31	6	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757272712	20	32524663	CG	C	420	PASS	-	-	-	-	-	Del	-	D	32524663	32524668	1	20	380.443	-	-	4	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	3	4	5	8	9	29	9	29	5	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757273039	20	33585145	T	TGGA	480	PASS	MYH7B	CCDS42869.1	r.3667_3668insgga	c.3575_3576insGGA	p.E1194_L1195insE	Ins	inframe	I	33585145	33585153	3	9	416.128	-	-	2	1	1	MYH7B|CCDS42869.1|r.3667_3668insgga|c.3575_3576insGGA|p.E1194_L1195insE|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	MYH7B|CCDS42869.1|r.3667_3668insgga|c.3575_3576insGGA|p.E1194_L1195insE|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	./.	0	0	0	0	12	9	12	9	0	0	./.	8	0	12	0	36	14	37	14	12	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757280346	20	57745206	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	57745206	57745212	1	45	644.963	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	8	7	9	27	34	27	34	7	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757292402	21	35202475	CGT	C	420	PASS	ITSN1	CCDS33545.1	r.?	-	-	Del	intronic	D	35202475	35202490	2	20	380.849	-	-	7	1	1	ITSN1|CCDS33545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITSN1|CCDS33545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	4	3	6	4	19	18	19	18	6	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757292629	21	35831820	AACTT	A	358	PASS	KCNE1	CCDS13636.1	r.76+3_76+6delaagu	c.?	p.?	Del	protein_coding:five_prime_UTR:extended_intronic_splice_region:extended_cis_splice_site:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant	D	35831820	35831827	4	20	377.839	-	-	1	1	1	KCNE1|CCDS13636.1|r.76+3_76+6delaagu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:extended_cis_splice_site:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:CGPX06:SO:0000159:SO:0001623:SO:CGPX04:SO:CGPX03:SO:0001576	KCNE1|CCDS13636.1|r.76+3_76+6delaagu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:extended_cis_splice_site:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:CGPX06:SO:0000159:SO:0001623:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	10	3	10	3	0	0	./.	4	3	4	4	28	15	28	15	4	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757295245	21	43251889	TGCCAGG	T	261	PASS	PRDM15	CCDS42932.1	r.?	-	-	Del	intronic	D	43251889	43251898	6	24	489.061	-	-	1	1	1	PRDM15|CCDS42932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDM15|CCDS42932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	7	0	0	24	37	24	37	2	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757310199	3	10234432	GTC	G	1020	PASS	IRAK2	CCDS33697.1	r.?	-	-	Del	intronic	D	10234432	10234438	2	84	908.003	-	-	2	1	1	IRAK2|CCDS33697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IRAK2|CCDS33697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	11	6	15	8	22	22	22	22	15	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757324763	3	66767782	AG	A	1289	PASS	-	-	-	-	-	Del	-	D	66767782	66767784	1	144	1184.94	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	11	11	13	13	23	23	23	23	13	13	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757329396	3	81429675	CACATTATGT	C	435	PASS	-	-	-	-	-	Del	-	D	81429675	81429690	9	72	806.739	-	-	1	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	8	7	11	7	19	24	19	25	11	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757330713	3	87814385	GAT	G	540	PASS	-	-	-	-	-	Del	-	D	87814385	87814389	2	30	485.488	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	4	6	4	13	11	13	11	6	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757341539	3	133296008	G	GT	509	PASS	CDV3	CCDS46918.1	r.?	-	-	Ins	intronic	I	133296008	133296017	1	24	478.866	-	-	8	1	1	CDV3|CCDS46918.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDV3|CCDS46918.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	7	2	10	4	22	10	22	10	10	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757342470	3	137566234	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	137566234	137566241	1	18	478.866	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	14	11	0	0	./.	8	1	12	7	25	19	25	19	12	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757353481	3	181643523	ATC	A	588	PASS	-	-	-	-	-	Del	-	D	181643523	181643531	2	45	647.318	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	8	6	11	12	23	12	23	6	11	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757353490	3	181669708	A	AAC	360	PASS	-	-	-	-	-	Ins	-	I	181669708	181669710	2	7	314.628	-	-	0	1	-	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	0	1	0	26	11	26	11	7	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757359297	4	3319805	C	CGGAGGCCCGGCCTCCTCACTTAGCAGCCTCAGCGT	261	PASS	RGS12	CCDS3367.1	r.?	-	-	Ins	intronic	I	3319805	3319832	35	28	289.032	-	-	0	1	1	RGS12|CCDS3367.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS12|CCDS3367.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	6	0	0	34	20	37	26	3	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757373644	4	52840950	CAGTGT	C	298	PASS	-	-	-	-	-	Del	-	D	52840950	52840956	5	15	323.536	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	2	4	21	23	21	23	2	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757375575	4	59634713	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	59634713	59634721	1	32	533.206	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	7	4	9	8	25	8	26	4	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757386920	4	101104582	T	TA	300	PASS	DDIT4L	CCDS34036.1	r.?	-	-	Ins	downstream	I	101104582	101104590	1	12	266.603	-	-	7	1	1	DDIT4L|CCDS34036.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DDIT4L|CCDS34036.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	16	19	16	0	0	./.	2	3	2	3	14	20	14	20	2	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757399323	4	147333181	TC	T	360	PASS	SLC10A7	CCDS34073.1	r.?	-	-	Del	intronic	D	147333181	147333183	1	16	323.536	-	-	1	1	1	SLC10A7|CCDS34073.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC10A7|CCDS34073.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	3	3	5	24	23	24	23	3	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757409648	4	183155074	TAA	T	420	PASS	ODZ3	ENST00000512480	r.?	-	-	Del	intronic	D	183155074	183155077	2	20	377.459	-	-	2	1	1	ODZ3|ENST00000512480|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ODZ3|ENST00000512480|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	4	3	6	20	23	20	23	3	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757416538	5	8642116	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	8642116	8642124	1	16	318.924	-	-	7	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	3	3	4	3	36	29	36	31	4	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757416586	5	8793620	A	AA	569	PASS	-	-	-	-	-	Ins	-	I	8793619	8793621	1	35	519.699	-	-	1	1	1	-	-	./.	0	0	0	0	11	19	11	20	0	0	./.	6	4	1	0	24	21	24	21	7	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757417042	5	10162500	TCCCATCTGGGGCCCC	T	261	PASS	-	-	-	-	-	Del	-	D	10162500	10162516	15	30	485.61	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	4	5	4	18	25	18	25	5	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757418460	5	15173486	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	15173486	15173502	2	12	269.784	-	-	7	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	3	2	3	2	44	30	44	30	3	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757419193	5	17444944	TC	T	420	PASS	-	-	-	-	-	Del	-	D	17444944	17444947	1	20	377.697	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	7	8	29	23	29	23	7	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757422765	5	28743225	A	AAC	300	PASS	-	-	-	-	-	Ins	-	I	28743225	28743239	2	10	263.763	-	-	6	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	1	4	6	5	29	21	29	21	6	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757438438	5	87985463	GC	G	660	PASS	-	-	-	-	-	Del	-	D	87985463	87985469	1	42	588.707	-	-	5	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	5	10	7	33	28	33	28	10	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757438615	5	89013656	AAAG	A	300	PASS	-	-	-	-	-	Del	-	D	89013656	89013666	3	12	269.784	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	3	2	17	15	17	15	3	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757444505	5	112354972	TAGAA	T	360	PASS	DCP2	CCDS34210.1	r.7253_7256delAGAA	c.?	p.?	Del	3'UTR variant	D	112354972	112354980	4	12	323.74	-	-	1	1	1	DCP2|CCDS34210.1|r.7253_7256delAGAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	DCP2|CCDS34210.1|r.7253_7256delAGAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	1	5	1	10	8	21	8	21	1	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757451215	5	137447121	C	CA	300	PASS	NME5	CCDS4197.1	r.?	-	-	Ins	downstream	I	137447121	137447131	1	12	261.957	-	-	9	1	1	NME5|CCDS4197.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NME5|CCDS4197.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	6	3	28	29	28	29	6	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757459731	5	168927871	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	168927871	168927878	1	35	533.547	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	6	4	9	8	26	20	26	20	9	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757463728	6	267157	AG	A	300	PASS	-	-	-	-	-	Del	-	D	267157	267159	1	6	261.885	-	-	1	1	1	-	-	./.	0	0	0	0	27	24	27	24	0	0	./.	5	0	7	0	52	43	52	43	7	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757477762	6	38577145	CA	C	300	PASS	BTBD9	CCDS47418.1	r.?	-	-	Del	intronic	D	38577145	38577155	1	12	269.712	-	-	9	1	1	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	2	3	19	31	19	31	2	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757488632	6	74613149	G	GCGCC	336	PASS	-	-	-	-	-	Ins	-	I	74613149	74613151	4	33	610.582	-	-	0	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	10	2	0	0	26	31	26	31	10	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757494654	6	97312851	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	97312851	97312858	1	16	320.042	-	-	6	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	3	4	5	31	27	31	27	4	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757496254	6	104366915	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	104366915	104366917	1	15	320.042	-	-	1	1	1	-	-	./.	0	0	0	0	11	24	11	24	0	0	./.	2	4	4	7	16	19	16	19	4	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757499046	6	114160932	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	114160932	114160939	1	21	426.722	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	6	2	8	3	20	22	20	22	8	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757504862	6	135730714	T	TTATCTTTC	551	PASS	AHI1	CCDS47483.1	r.?	-	-	Ins	intronic	I	135730714	135730729	8	98	932.789	-	-	1	1	1	AHI1|CCDS47483.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AHI1|CCDS47483.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	13	6	12	5	39	23	40	24	13	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757507080	6	144305363	AT	A	720	PASS	PLAGL1	CCDS5202.1	r.?	-	-	Del	intronic	D	144305363	144305366	1	45	647.308	-	-	2	1	1	PLAGL1|CCDS5202.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLAGL1|CCDS5202.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	8	4	8	6	26	21	26	21	8	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757510398	6	155351618	AG	A	720	PASS	-	-	-	-	-	Del	-	D	155351618	155351621	1	49	646.104	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	6	6	8	32	28	32	28	6	8	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757511113	6	158243089	A	AT	300	PASS	SNX9	CCDS5253.1	r.?	-	-	Ins	upstream	I	158243089	158243099	1	12	266.701	-	-	9	1	1	SNX9|CCDS5253.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	SNX9|CCDS5253.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	11	12	12	0	0	./.	3	2	3	2	29	27	31	27	3	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757512911	6	163212345	T	TTG	509	PASS	PACRG	CCDS43524.1	r.?	-	-	Ins	intronic	I	163212345	163212347	2	30	471.031	-	-	0	1	1	PACRG|CCDS43524.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PACRG|CCDS43524.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	5	4	6	21	25	21	25	4	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757513361	6	164839053	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	164839053	164839059	1	72	800.104	-	-	5	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	8	7	10	10	25	24	25	24	10	10	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757528011	7	44378333	CAT	C	360	PASS	-	-	-	-	-	Del	-	D	44378333	44378337	2	15	324.023	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	3	4	17	21	17	21	3	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757532475	7	61803545	TTTTA	T	263	PASS	-	-	-	-	-	Del	-	D	61803545	61803553	4	16	810.058	-	-	1	1	1	-	-	./.	0	0	0	0	100	36	100	36	0	0	./.	15	0	15	0	210	136	210	136	15	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757533240	7	63890399	CT	C	720	PASS	-	-	-	-	-	Del	-	D	63890399	63890401	1	45	648.047	-	-	1	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	8	4	9	6	26	18	26	18	9	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757543212	7	99384673	C	CTCTTAGTACTATG	319	PASS	CYP3A4	CCDS5674.1	r.?	-	-	Ins	upstream	I	99384673	99384675	13	42	507.948	-	-	0	1	1	CYP3A4|CCDS5674.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CYP3A4|CCDS5674.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	2	8	2	10	0	0	./.	6	5	0	0	25	11	28	17	6	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757543278	7	99641907	ATCT	A	298	PASS	-	-	-	-	-	Del	-	D	99641907	99641911	3	15	324.023	-	-	1	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	4	2	6	2	16	18	16	18	6	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757544513	7	103228222	AAAT	A	598	PASS	RELN	CCDS47680.1	r.?	-	-	Del	intronic	D	103228222	103228226	3	36	594.043	-	-	1	1	1	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	8	3	10	3	35	14	35	14	10	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757545354	7	106005078	T	TA	295	PASS	-	-	-	-	-	Ins	-	I	106005078	106005082	1	12	266.407	-	-	3	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	5	3	22	13	22	13	5	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757560227	8	232111	ATCCACACTCCACGTTACAGAGTCCACACTCCACGTTACAGAG	A	510	PASS	-	-	-	-	-	Del	-	D	232111	232168	42	36	591.399	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	8	3	0	0	43	26	43	26	8	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757561058	8	2958592	TTC	T	360	PASS	CSMD1	ENST00000318252	r.?	-	-	Del	intronic	D	2958592	2958596	2	7	323.621	-	-	1	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	6	0	9	0	23	14	23	14	9	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757565570	8	16009703	A	AT	720	PASS	MSR1	CCDS5995.1	r.?	-	-	Ins	intronic	I	16009703	16009710	1	33	640.018	-	-	6	1	1	MSR1|CCDS5995.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSR1|CCDS5995.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	10	4	12	22	28	22	28	4	12	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757571779	8	34521539	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	34521539	34521549	1	12	266.574	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	2	6	25	28	25	28	2	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757575417	8	52284296	AT	A	540	PASS	PXDNL	CCDS47855.1	r.?	-	-	Del	intronic	D	52284296	52284300	1	28	486.335	-	-	3	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	6	3	8	4	29	16	29	16	8	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757589642	8	106151437	AG	A	300	PASS	-	-	-	-	-	Del	-	D	106151437	106151439	1	6	248.512	-	-	1	1	-	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	0	10	0	31	12	31	12	10	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757595108	8	126125310	GT	G	360	PASS	NSMCE2	CCDS6356.1	r.?	-	-	Del	intronic	D	126125310	126125312	1	7	323.019	-	-	1	1	1	NSMCE2|CCDS6356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSMCE2|CCDS6356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	6	0	7	0	24	19	24	19	7	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757598504	8	138714815	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	138714815	138714822	1	12	318.203	-	-	6	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	1	5	1	7	15	26	15	26	1	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757601551	9	2761438	AC	A	960	PASS	-	-	-	-	-	Del	-	D	2761438	2761440	1	81	865.548	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	8	8	9	9	33	28	33	28	9	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757604278	9	11888816	CT	C	629	PASS	-	-	-	-	-	Del	-	D	11888816	11888820	1	36	592.054	-	-	3	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	8	3	10	6	25	37	25	37	10	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757606660	9	19553606	AGTCAGTGCAGCATGCT	A	522	PASS	SLC24A2	CCDS6493.1	r.?	-	-	Del	intronic	D	19553606	19553624	16	96	973.742	-	-	1	1	1	SLC24A2|CCDS6493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A2|CCDS6493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	11	7	10	7	35	21	36	21	11	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757618952	9	81898914	C	CTG	300	PASS	-	-	-	-	-	Ins	-	I	81898914	81898918	2	12	264.463	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	3	10	14	10	14	2	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757625120	9	104637159	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	104637159	104637165	1	35	534.947	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	6	6	9	28	30	29	30	6	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757628269	9	115077901	TA	T	420	PASS	ROD1	CCDS6784.1	r.?	-	-	Del	intronic	D	115077901	115077908	1	20	378.677	-	-	6	1	1	ROD1|CCDS6784.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROD1|CCDS6784.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	3	7	4	21	9	21	9	7	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757631330	9	125425248	GTA	G	300	PASS	OR1L1	CCDS35127.1	r.?	-	-	Del	downstream	D	125425248	125425252	2	12	269.28	-	-	1	1	-	OR1L1|CCDS35127.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	OR1L1|CCDS35127.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	6	6	6	6	0	0	./.	2	3	2	5	20	24	20	24	2	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757633915	9	132971155	CTG	C	300	PASS	NCS1	CCDS6932.1	r.?	-	-	Del	intronic	D	132971155	132971174	2	12	270.484	-	-	9	1	1	NCS1|CCDS6932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCS1|CCDS6932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	3	2	3	2	39	22	39	22	3	2	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757635414	9	137577350	CCAT	C	269	PASS	COL5A1	CCDS6982.1	r.?	-	-	Del	intronic	D	137577350	137577356	3	12	269.882	-	-	1	1	-	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	3	2	6	4	65	120	65	122	7	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757636936	X	3932870	TG	T	300	PASS	-	-	-	-	-	Del	-	D	3932870	3932872	1	6	267.589	-	-	1	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	5	0	7	0	28	11	28	11	7	0	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757638804	X	12537654	G	GA	600	PASS	FRMPD4	CCDS35201.1	r.?	-	-	Ins	intronic	I	12537654	12537661	1	35	535.179	-	-	6	1	1	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	6	8	9	27	25	27	25	8	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757641802	X	26341027	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	26341027	26341031	1	25	427.541	-	-	3	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	4	4	5	4	21	12	21	12	5	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757643946	X	37993727	TC	T	960	PASS	ENSG00000250349	ENST00000465127	r.?	-	-	Del	intronic	D	37993727	37993730	1	80	864.714	-	-	2	1	1	ENSG00000250349|ENST00000465127|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000250349|ENST00000465127|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	7	9	9	12	17	18	17	18	9	12	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757646637	X	47710938	A	AT	420	PASS	ZNF81	CCDS43933.1	r.?	-	-	Ins	intronic	I	47710938	47710946	1	20	374.625	-	-	7	1	1	ZNF81|CCDS43933.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF81|CCDS43933.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	4	3	6	4	25	28	26	28	6	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757647534	X	51105707	T	TA	1109	PASS	-	-	-	-	-	Ins	-	I	51105707	51105717	1	108	1015.03	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	11	8	13	15	36	44	36	45	13	15	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757647617	X	51477619	TA	T	300	PASS	-	-	-	-	-	Del	-	D	51477619	51477629	1	12	269.395	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	3	4	37	45	37	45	3	4	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757648806	X	56686088	GT	G	1920	PASS	-	-	-	-	-	Del	-	D	56686088	56686094	1	285	1727.02	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	18	14	27	17	53	34	53	34	27	17	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757649447	X	64230994	C	CA	420	PASS	ZC4H2	ENST00000337990	r.?	-	-	Ins	intronic	I	64230994	64231004	1	18	374.023	-	-	9	1	1	ZC4H2|ENST00000337990|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZC4H2|ENST00000337990|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	18	0	0	./.	5	2	5	7	32	16	33	16	5	7	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757652442	X	79200139	CATCATTGCACACATCCTGACAGTGA	C	261	PASS	-	-	-	-	-	Del	-	D	79200139	79200165	25	28	487.079	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	6	1	5	17	26	19	27	3	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757654908	X	90927920	TA	T	396	PASS	-	-	-	-	-	Del	-	D	90927920	90927930	1	20	378.839	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	3	9	5	27	18	27	18	9	5	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757662894	X	130848627	GTAAC	G	521	PASS	-	-	-	-	-	Del	-	D	130848627	130848633	4	48	649.439	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	7	7	9	26	33	26	33	7	9	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757664218	X	137295239	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	137295239	137295249	1	20	364.992	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	4	6	6	38	23	39	23	6	6	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757666037	X	145338100	TTATGGATTATCTCTACTTATTTCCCTTTCTCATCCCTATTG	T	261	PASS	-	-	-	-	-	Del	-	D	145338100	145338143	41	28	484.671	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	3	1	1	26	16	28	18	6	3	1	1	1	1	1	1	1	1
2772606	PD7310a	PD7310b	2757666856	X	149125805	ATAGCTACTTCTGCACAATATTTTACTTCTAGTAATATTTTAGATCAGATAATTTATTTCTTTTTAG	A	348	PASS	-	-	-	-	-	Del	-	D	149125805	149125872	66	48	647.031	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	7	5	0	0	10	18	17	23	7	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2762981123	1	1481165	G	GA	269	PASS	SSU72	CCDS32.1	r.?	-	-	Ins	intronic	I	1481165	1481175	1	10	263.471	-	-	9	1	1	SSU72|CCDS32.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SSU72|ENST00000378726|r.702_703insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	14	11	15	12	0	0	./.	1	4	1	4	33	28	33	28	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2762982427	1	6064637	A	AC	269	PASS	KCNAB2	CCDS55.1	r.?	-	-	Ins	intronic	I	6064637	6064645	1	12	261.665	-	-	7	1	1	KCNAB2|CCDS55.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KCNAB2|CCDS55.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	4	3	18	24	18	24	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2762990520	1	26906939	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	26906939	26906940	1	12	260.461	-	-	0	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	4	3	22	24	22	24	4	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763005727	1	75617175	AG	A	300	PASS	LHX8	CCDS30756.1	r.?	-	-	Del	intronic	D	75617175	75617177	1	12	268.288	-	-	1	1	1	LHX8|CCDS30756.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHX8|CCDS30756.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	3	2	19	20	19	20	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763008376	1	84259114	AC	A	480	PASS	-	-	-	-	-	Del	-	D	84259114	84259116	1	25	429.261	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	4	5	4	16	22	16	22	5	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763017395	1	112678610	TG	T	840	PASS	-	-	-	-	-	Del	-	D	112678610	112678613	1	63	751.206	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	8	6	10	9	22	24	22	24	10	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763020475	1	142540283	G	GGAATT	378	PASS	ENSG00000238159	ENST00000426281	r.?	-	-	Ins	upstream	I	142540283	142540288	5	15	707.858	-	-	0	1	1	ENSG00000238159|ENST00000426281|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000238159|ENST00000417230|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	44	84	45	85	0	0	./.	14	0	18	0	158	116	159	136	18	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763020709	1	142600807	GA	G	275	PASS	-	-	-	-	-	Del	-	D	142600807	142600815	1	27	536.576	-	-	7	1	1	-	-	./.	0	0	0	0	28	33	28	34	0	0	./.	8	2	10	1	44	58	44	58	10	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763024131	1	148555968	G	GCTGCGCCTGCGC	493	PASS	-	-	-	-	-	Ins	-	I	148555968	148555983	12	18	789.358	-	-	1	1	1	-	-	./.	0	0	0	0	20	31	21	31	0	0	./.	17	0	33	0	193	136	194	136	34	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763024542	1	149041984	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	149041984	149041989	2	20	375.001	-	-	4	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	4	3	4	6	102	88	102	88	4	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763026128	1	151544714	T	TA	300	PASS	TUFT1	CCDS1000.1	r.?	-	-	Ins	intronic	I	151544714	151544721	1	10	265.278	-	-	6	1	1	TUFT1|CCDS1000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TUFT1|CCDS1000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	1	7	2	52	47	54	47	7	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763026491	1	152368016	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	152368016	152368017	1	10	264.675	-	-	0	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	1	4	1	5	41	63	43	63	1	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763026507	1	152417873	CA	C	1020	PASS	-	-	-	-	-	Del	-	D	152417873	152417875	1	88	912.179	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	10	7	14	10	47	35	47	35	14	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763026601	1	152772943	CCAAA	C	600	PASS	LCE1D	CCDS1025.1	r.?	-	-	Del	downstream	D	152772943	152772950	4	35	536.576	-	-	1	1	1	LCE1D|CCDS1025.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LCE1D|CCDS1025.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	18	16	18	0	0	./.	6	4	6	5	53	53	53	53	6	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763027392	1	154376765	TC	T	360	PASS	IL6R	CCDS1067.1	r.?	-	-	Del	upstream	D	154376765	154376767	1	7	312.312	-	-	1	1	1	IL6R|CCDS1067.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	IL6R|CCDS1067.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	9	11	9	0	0	./.	6	0	13	0	41	39	41	39	13	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763029607	1	158711187	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	158711187	158711194	1	12	265.278	-	-	6	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	2	3	2	59	40	59	40	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763029991	1	159733183	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	159733183	159733189	1	33	635.462	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	10	2	10	3	46	33	47	33	10	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763032197	1	164565350	TC	T	360	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164565350	164565352	1	7	305.69	-	-	1	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	6	0	11	0	43	54	43	54	11	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763032270	1	164716571	TAC	T	360	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164716571	164716585	2	16	321.945	-	-	6	1	-	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	3	5	48	54	48	54	3	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763033363	1	167198219	AC	A	300	PASS	POU2F1	CCDS1259.1	r.?	-	-	Del	intronic	D	167198219	167198221	1	10	268.288	-	-	1	1	1	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	1	4	1	4	51	34	51	34	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763035321	1	171481709	GGT	G	360	PASS	BAT2L2	ENST00000392078	r.?	-	-	Del	intronic	D	171481709	171481728	2	16	321.343	-	-	9	1	-	BAT2L2|ENST00000392078|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAT2L2|ENST00000392078|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	3	5	49	53	49	53	3	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763035463	1	171736387	G	GT	989	PASS	-	-	-	-	-	Ins	-	I	171736387	171736394	1	90	899.535	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	11	10	0	0	./.	9	8	10	11	56	59	56	60	10	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763040876	1	183715170	TG	T	480	PASS	RGL1	CCDS1359.1	r.?	-	-	Del	intronic	D	183715170	183715172	1	9	409.995	-	-	1	1	1	RGL1|CCDS1359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGL1|CCDS1359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	21	8	21	0	0	./.	8	0	12	0	36	56	36	56	12	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763041028	1	184061421	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	184061421	184061427	1	80	846.48	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	7	9	8	13	46	58	46	59	8	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763043566	1	189443414	GCTGGA	G	271	PASS	-	-	-	-	-	Del	-	D	189443414	189443423	5	10	482.918	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	9	0	4	0	43	50	49	50	10	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763047141	1	198021843	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	198021843	198021851	1	6	265.278	-	-	7	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	0	5	0	5	29	61	29	61	0	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763047466	1	198675829	GA	G	840	PASS	PTPRC	CCDS1397.1	r.?	-	-	Del	intronic	D	198675829	198675835	1	63	751.206	-	-	5	1	1	PTPRC|CCDS1397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRC|CCDS1397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	8	6	10	11	46	53	46	53	10	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763049819	1	203213113	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	203213113	203213131	2	12	321.343	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	1	6	1	58	41	58	41	6	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763050273	1	203904347	GA	G	869	PASS	-	-	-	-	-	Del	-	D	203904347	203904355	1	70	804.864	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	9	12	12	50	48	50	48	12	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763052006	1	208186001	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	208186001	208186003	1	7	318.333	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	0	7	0	49	64	49	64	7	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763052065	1	208358093	TAC	T	360	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208358093	208358112	2	12	321.945	-	-	9	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	1	6	1	53	41	53	41	6	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763054965	1	214315492	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	214315492	214315496	2	6	250.226	-	-	1	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	5	0	9	0	42	37	42	37	9	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763055898	1	216414879	T	TG	360	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	216414879	216414881	1	12	299.067	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	1	5	6	5	57	49	59	49	6	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763056325	1	217312574	GT	G	360	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	upstream	D	217312574	217312576	1	7	311.71	-	-	1	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	9	6	9	0	0	./.	6	0	7	0	33	44	33	44	7	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763059425	1	224323326	A	AAG	420	PASS	FBXO28	CCDS1539.1	r.?	-	-	Ins	intronic	I	224323326	224323328	2	8	352.725	-	-	0	1	-	FBXO28|CCDS1539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXO28|CCDS1539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	7	0	2	0	53	45	54	46	8	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763063701	1	233363179	AAT	A	360	PASS	PCNXL2	CCDS44335.1	r.?	-	-	Del	intronic	D	233363179	233363194	2	15	312.312	-	-	7	1	-	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	4	2	4	4	45	48	45	48	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763063979	1	234010268	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	234010268	234010277	1	21	424.444	-	-	8	1	1	-	-	./.	0	0	0	0	30	15	30	15	0	0	./.	6	2	14	4	66	39	69	40	14	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763063991	1	234038660	TTC	T	300	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	upstream	D	234038660	234038664	2	12	266.482	-	-	1	1	-	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	2	4	56	45	56	45	3	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763064274	1	234640841	CAG	C	269	PASS	-	-	-	-	-	Del	-	D	234640841	234640858	2	10	258.053	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	4	1	4	34	54	34	54	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763065006	1	235922037	T	TA	600	PASS	LYST	CCDS31062.1	r.?	-	-	Ins	intronic	I	235922037	235922038	1	36	530.555	-	-	0	1	1	LYST|CCDS31062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LYST|CCDS31062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	5	5	6	6	44	63	45	63	6	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763067767	1	240927209	C	CT	960	PASS	-	-	-	-	-	Ins	-	I	240927209	240927218	1	65	845.878	-	-	8	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	12	4	13	6	50	44	50	45	13	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763072592	10	1081855	T	TG	660	PASS	IDI1	CCDS7056.1	r.?	-	-	Ins	downstream	I	1081855	1081859	1	30	584.901	-	-	3	1	1	IDI1|CCDS7056.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	IDI1|CCDS7056.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	14	13	14	0	0	./.	2	9	5	12	33	53	34	54	5	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763073306	10	2799254	G	GA	480	PASS	ENSG00000214531	ENST00000398522	r.?	-	-	Ins	intronic	I	2799254	2799262	1	24	425.821	-	-	7	1	1	ENSG00000214531|ENST00000398522|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000214531|ENST00000398522|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	3	5	6	8	39	41	41	42	6	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763073768	10	3780535	T	TA	1680	PASS	-	-	-	-	-	Ins	-	I	3780535	3780543	1	189	1487.36	-	-	7	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	8	20	12	22	19	42	19	42	12	22	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763075917	10	8111432	TCA	T	1709	PASS	GATA3	CCDS31143.1	r.1493-3_1493-2delca	c.925-3_925-2delca	p.?	Del	ess splice	D	8111432	8111435	2	240	1558.05	-	-	1	1	1	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	14	8	14	8	0	0	./.	14	15	20	15	36	28	36	28	20	15	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763077212	10	11277125	CA	C	420	PASS	CELF2	CCDS44354.1	r.?	-	-	Del	intronic	D	11277125	11277134	1	18	376.808	-	-	8	1	1	CELF2|CCDS44354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELF2|CCDS44354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	5	2	6	2	42	34	42	34	6	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763083717	10	26144474	T	TA	1260	PASS	-	-	-	-	-	Ins	-	I	26144474	26144483	1	130	1115.37	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	9	12	16	18	26	37	26	38	16	18	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763087747	10	34340148	C	CTTGGTTGGTTTGTTGGTTGGTTGATTGCTTGG	269	PASS	-	-	-	-	-	Ins	-	I	34340148	34340159	32	12	172.819	-	-	0	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	0	0	43	32	43	32	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763091982	10	43396729	AG	A	300	PASS	-	-	-	-	-	Del	-	D	43396729	43396731	1	6	263.128	-	-	1	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	5	0	7	0	34	26	34	26	8	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763095573	10	55833944	A	AT	1906	PASS	PCDH15	CCDS44404.1	r.?	-	-	Ins	intronic	I	55833944	55833953	1	300	1739.05	-	-	8	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	14	19	17	26	37	45	37	45	17	26	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763096523	10	58465528	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	58465528	58465538	1	10	266.138	-	-	9	1	1	-	-	./.	0	0	0	0	24	10	24	10	0	0	./.	1	4	1	4	52	47	53	47	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763097351	10	60199984	ACT	A	269	PASS	-	-	-	-	-	Del	-	D	60199984	60200001	2	10	266.138	-	-	8	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	1	4	1	4	22	40	22	40	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763098483	10	63204424	A	AG	300	PASS	TMEM26	CCDS41530.1	r.?	-	-	Ins	intronic	I	63204424	63204425	1	6	258.311	-	-	0	1	1	TMEM26|CCDS41530.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM26|CCDS41530.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	0	5	0	45	37	46	37	5	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763103276	10	74511068	G	GT	300	PASS	CCDC109A	CCDS7317.1	r.?	-	-	Ins	intronic	I	74511068	74511078	1	12	266.138	-	-	9	1	1	CCDC109A|CCDS7317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC109A|CCDS7317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	2	3	2	3	24	37	24	37	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763104526	10	77500672	CAT	C	420	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	intronic	D	77500672	77500689	2	18	375.001	-	-	8	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	2	6	2	35	45	35	45	6	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763107949	10	87807504	GA	G	960	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	87807504	87807512	1	80	860.672	-	-	7	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	9	7	13	11	49	34	49	34	13	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763110016	10	93557252	TG	T	269	PASS	TNKS2	CCDS7417.1	r.?	-	-	Del	upstream	D	93557252	93557262	1	12	263.73	-	-	9	1	1	TNKS2|CCDS7417.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TNKS2|CCDS7417.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	2	4	34	27	34	27	2	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763111361	10	96255490	TG	T	420	PASS	TBC1D12	CCDS41553.1	r.?	-	-	Del	intronic	D	96255490	96255492	1	14	375.603	-	-	1	1	1	TBC1D12|CCDS41553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D12|CCDS41553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	1	6	1	6	25	29	25	29	1	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763112239	10	98528354	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	98528354	98528362	1	20	372.593	-	-	7	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	4	3	6	3	46	47	46	47	6	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763112470	10	99015333	G	GA	300	PASS	ARHGAP19	CCDS7454.2	r.?	-	-	Ins	intronic	I	99015333	99015343	1	12	266.138	-	-	9	1	1	ARHGAP19|CCDS7454.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP19|CCDS7454.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	2	3	2	3	38	39	38	39	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763112895	10	99985232	C	CA	300	PASS	C10orf28	CCDS31267.1	r.?	-	-	Ins	intronic	I	99985232	99985242	1	10	266.138	-	-	9	1	1	C10orf28|CCDS31267.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf28|CCDS31267.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	13	11	0	0	./.	1	4	1	4	36	42	36	42	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763115787	10	106500464	TTTTG	T	1498	PASS	SORCS3	CCDS7558.1	r.?	-	-	Del	intronic	D	106500464	106500480	4	195	1398.97	-	-	3	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	14	12	22	20	39	34	39	34	23	20	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763115858	10	106716368	TA	T	360	PASS	SORCS3	CCDS7558.1	r.?	-	-	Del	intronic	D	106716368	106716372	1	15	322.376	-	-	3	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	4	5	41	28	41	28	4	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763118020	10	112545530	A	AT	360	PASS	RBM20	CCDS44477.1	r.?	-	-	Ins	intronic	I	112545530	112545533	1	12	318.763	-	-	2	1	1	RBM20|CCDS44477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM20|CCDS44477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	19	13	0	0	./.	5	1	8	2	28	42	29	42	8	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763119108	10	115680736	G	GT	300	PASS	NHLRC2	CCDS7585.1	r.?	-	-	Ins	downstream	I	115680736	115680746	1	12	264.332	-	-	9	1	1	NHLRC2|CCDS7585.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NHLRC2|CCDS7585.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	21	21	21	21	0	0	./.	3	2	3	2	44	32	44	33	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763133760	11	19443776	T	TG	869	PASS	-	-	-	-	-	Ins	-	I	19443776	19443783	1	70	798.963	-	-	6	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	6	9	6	11	25	30	25	30	6	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763138928	11	33732440	G	GA	420	PASS	CD59	CCDS7886.1	r.?	-	-	Ins	intronic	I	33732440	33732448	1	20	373.973	-	-	7	1	1	CD59|CCDS7886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CD59|CCDS7886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	24	11	24	0	0	./.	3	4	4	6	19	21	20	22	4	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763139929	11	36565499	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	36565499	36565506	1	45	641.097	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	15	14	0	0	./.	8	4	10	10	25	19	25	19	10	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763146941	11	60835851	ATC	A	360	PASS	-	-	-	-	-	Del	-	D	60835851	60835869	2	15	324.161	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	4	2	30	25	30	25	4	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763147258	11	61733588	T	TA	360	PASS	BEST1	CCDS44623.1	r.?	-	-	Ins	downstream	I	61733588	61733598	1	15	320.549	-	-	9	1	1	BEST1|CCDS44623.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	FTH1|CCDS41655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	6	6	39	46	39	46	6	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763150765	11	70434143	TG	T	329	PASS	SHANK2	ENST00000338508	r.?	-	-	Del	intronic	D	70434143	70434148	1	16	323.559	-	-	4	1	1	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	3	4	4	42	28	42	28	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763151136	11	71572150	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	71572150	71572160	1	20	373.973	-	-	9	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	3	4	3	40	36	40	36	4	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763170867	12	1531128	GT	G	1320	PASS	ERC1	CCDS8508.1	r.?	-	-	Del	intronic	D	1531128	1531131	1	135	1181.31	-	-	2	1	1	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	14	8	16	14	39	33	39	33	16	14	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763173254	12	7326650	C	CCCTT	269	PASS	-	-	-	-	-	Ins	-	I	7326650	7326666	4	6	251.511	-	-	3	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	0	5	0	5	12	19	12	20	0	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763178293	12	17938234	TA	T	1148	PASS	-	-	-	-	-	Del	-	D	17938234	17938242	1	117	1078.29	-	-	7	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	8	12	11	18	32	37	32	37	11	18	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763180735	12	23535543	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	23535543	23535553	1	10	264.757	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	4	1	33	43	34	43	4	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763180886	12	23958366	G	GA	300	PASS	SOX5	CCDS8699.1	r.?	-	-	Ins	intronic	I	23958366	23958376	1	12	266.563	-	-	9	1	1	SOX5|CCDS8699.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SOX5|CCDS8699.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	11	21	11	0	0	./.	2	3	2	3	51	33	51	34	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763182511	12	27651633	G	GA	960	PASS	C12orf70	CCDS44852.1	r.?	-	-	Ins	intronic	I	27651633	27651643	1	81	850.593	-	-	9	1	1	C12orf70|CCDS44852.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf70|CCDS44852.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	15	17	0	0	./.	8	8	10	10	49	46	49	46	10	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763186124	12	38758397	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	38758397	38758407	1	8	366.565	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	7	0	8	1	33	25	33	25	8	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763188599	12	45608929	C	CT	1380	PASS	ANO6	CCDS31782.1	r.?	-	-	Ins	upstream	I	45608929	45608936	1	156	1221.97	-	-	6	1	1	ANO6|CCDS31782.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PLEKHA9|CCDS8747.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	12	11	15	15	35	46	35	47	15	15	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763190206	12	49824021	TTACAGCACGCCACCGTGCCTGGCTAATTTTTGTATTATTTTTTAGTAGAGATGGTGTTTCACTATGTTGGCCAGGCTGGTCTCGAACCCCTGACCTGAAATGATCCGCCGACCTCGGCCTCCCAAAGTGCCGGGATTACAGGCGTGACCCACCATGCCTGGCATTTCATATTTCTTTATAAAGCTGATGAAAATGATATTTATTGGTAAACTGATTATATTATGGAATGAGAATTCCTGGTGACTTTCTTATAATTAAAACCCTTTAAAGATGAGAAGAATGTTTTTATTTGCAACCTCTCATTTTCTTGTTTTCCATCATTATCTGCAGGTGTAGTAGGTTAGCATTTATCTTCTTGACACATTTCATGAACCTGTTGATTGGGTTTCTGAGTTAGAATTATATTATTTAGATTCAAATGAAGGCTTTCAGCTTTGATTTAATTTACTGGGTAAGGGTCTTATTTATTTTTACTTTTTTGAAATAGAATCTCTCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATATGGGCTCATTTTAGCCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCTCCTGAGTAGCTGGGAC	T	336	PASS	SPATS2	CCDS31794.1	r.?	-	-	Del	intronic	D	49824021	49824626	599	48	646.975	-	-	1	1	1	SPATS2|CCDS31794.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPATS2|CCDS31794.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	7	5	0	0	18	32	24	36	7	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763194232	12	58627297	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	58627297	58627307	1	12	265.359	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	2	43	37	44	37	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763202152	12	80153054	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	80153054	80153062	1	30	579.213	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	9	7	13	32	26	33	26	7	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763204957	12	88413539	G	GA	300	PASS	C12orf50	CCDS9031.1	r.?	-	-	Ins	intronic	I	88413539	88413548	1	12	266.563	-	-	8	1	1	C12orf50|CCDS9031.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf50|CCDS9031.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	13	24	13	0	0	./.	3	2	4	4	48	35	48	35	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763211696	12	104828010	A	AT	894	PASS	-	-	-	-	-	Ins	-	I	104828010	104828017	1	96	955.412	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	11	7	17	12	34	40	34	40	17	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763211793	12	105113034	TG	T	720	PASS	CHST11	CCDS9099.1	r.?	-	-	Del	intronic	D	105113034	105113037	1	45	646.373	-	-	2	1	1	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	8	4	10	7	45	32	45	32	10	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763213912	12	110553788	CCTCTT	C	298	PASS	-	-	-	-	-	Del	-	D	110553788	110553800	5	7	323.488	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	6	0	7	39	40	39	40	0	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763222550	12	128613105	CA	C	360	PASS	-	-	-	-	-	Del	-	D	128613105	128613114	1	15	323.488	-	-	8	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	2	4	3	5	36	33	36	33	3	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763223762	12	131395111	T	TA	929	PASS	-	-	-	-	-	Ins	-	I	131395111	131395120	1	72	853.001	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	11	7	14	30	33	31	33	7	14	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763244651	13	81152260	ACAGCAGCAG	A	290	PASS	-	-	-	-	-	Del	-	D	81152260	81152281	9	35	537.946	-	-	6	1	-	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	6	5	10	12	22	12	22	5	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763245670	13	85261090	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	85261090	85261092	1	42	589.754	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	6	5	7	8	16	21	16	21	7	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763253838	13	112633540	A	AC	1200	PASS	-	-	-	-	-	Ins	-	I	112633540	112633541	1	112	1069.87	-	-	0	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	7	13	11	17	19	24	19	24	11	17	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763255706	14	22134930	T	TC	300	PASS	OR4E2	CCDS41916.1	r.?	-	-	Ins	downstream	I	22134930	22134933	1	12	261.879	-	-	2	1	1	OR4E2|CCDS41916.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	OR4E2|CCDS41916.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	9	15	9	0	0	./.	2	3	3	4	29	26	29	26	3	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763257752	14	27953766	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	27953766	27953775	1	15	321.479	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	4	2	4	3	22	26	22	26	4	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763260910	14	36651206	TA	T	480	PASS	-	-	-	-	-	Del	-	D	36651206	36651216	1	21	432.854	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	2	6	3	34	23	34	23	6	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763267221	14	54001373	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	54001373	54001392	2	12	270.91	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	3	2	3	3	23	22	23	22	3	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763269213	14	60416003	G	GT	290	PASS	-	-	-	-	-	Ins	-	I	60416003	60416006	1	11	535.799	-	-	2	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	10	0	11	0	46	26	47	26	11	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763270893	14	65096905	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	65096905	65096914	1	25	428.639	-	-	8	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	4	8	7	29	27	30	27	8	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763271882	14	67739896	CA	C	433	PASS	MPP5	CCDS9779.1	r.?	-	-	Del	intronic	D	67739896	67739898	1	21	431.65	-	-	1	1	1	MPP5|CCDS9779.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MPP5|CCDS9779.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	6	2	8	2	22	20	22	20	8	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763273642	14	73221488	A	AT	480	PASS	DPF3	CCDS45133.1	r.?	-	-	Ins	intronic	I	73221488	73221492	1	24	428.037	-	-	3	1	1	DPF3|CCDS45133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPF3|CCDS45133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	3	6	5	30	23	31	23	6	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763283520	14	102403145	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	102403145	102403154	1	12	267.9	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	12	0	0	./.	2	3	4	5	24	29	24	29	4	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763286202	15	20570293	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	20570293	20570301	1	36	534.338	-	-	7	1	1	-	-	./.	0	0	0	0	39	51	39	52	0	0	./.	5	5	9	7	67	57	67	57	9	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763289199	15	29612680	C	CA	720	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Ins	intronic	I	29612680	29612687	1	33	643.373	-	-	6	1	1	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	10	2	12	2	34	28	34	28	12	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763289736	15	31263538	A	AGTAC	480	PASS	MTMR10	CCDS45204.1	r.?	-	-	Ins	intronic	I	31263538	31263543	4	24	413.864	-	-	1	1	1	MTMR10|CCDS45204.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTMR10|CCDS45204.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	5	3	7	39	33	39	34	3	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763290874	15	34307206	CA	C	960	PASS	CHRM5	CCDS10031.1	r.?	-	-	Del	intronic	D	34307206	34307208	1	80	867.464	-	-	1	1	1	CHRM5|CCDS10031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM5|CCDS10031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	7	9	8	12	18	25	18	25	8	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763299615	15	59804670	CAAAAAAAAAAAAAAA	C	348	PASS	FAM81A	CCDS45269.1	r.?	-	-	Del	intronic	D	59804670	59804697	15	45	642.771	-	-	1	1	-	FAM81A|CCDS45269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM81A|CCDS45269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	4	8	4	9	14	20	14	20	4	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763302736	15	67996806	C	CT	660	PASS	MAP2K5	CCDS10224.1	r.?	-	-	Ins	intronic	I	67996806	67996816	1	42	587.351	-	-	9	1	1	MAP2K5|CCDS10224.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAP2K5|CCDS10224.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	6	5	9	9	29	34	29	34	9	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763305152	15	75266879	G	GT	737	PASS	-	-	-	-	-	Ins	-	I	75266879	75266889	1	44	681.936	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	10	3	16	5	37	23	37	23	16	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763307366	15	81356371	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	81356371	81356381	1	16	321.687	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	3	3	3	32	36	32	37	3	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763312913	15	98035550	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	98035550	98035569	2	10	271.083	-	-	9	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	1	4	2	16	32	16	32	4	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763313457	15	99393974	TG	T	300	PASS	IGF1R	CCDS10378.1	r.?	-	-	Del	intronic	D	99393974	99393984	1	12	271.083	-	-	9	1	1	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	5	3	28	19	28	19	5	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763318625	16	7864622	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	7864622	7864630	1	16	428.086	-	-	7	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	1	7	4	11	44	45	45	45	4	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763320715	16	11433809	TC	T	420	PASS	C16orf75	ENST00000381820	r.?	-	-	Del	intronic	D	11433809	11433812	1	14	378.79	-	-	2	1	1	C16orf75|ENST00000381820|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C16orf75|ENST00000381820|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	14	0	0	./.	6	1	6	1	60	41	60	44	6	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763321942	16	13522150	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	13522150	13522170	2	12	270.564	-	-	9	1	-	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	2	3	2	49	43	49	43	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763324485	16	18939080	AC	A	329	PASS	SMG1	CCDS45430.1	r.?	-	-	Del	upstream	D	18939080	18939082	1	15	320.462	-	-	1	1	1	SMG1|CCDS45430.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SMG1|CCDS45430.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	3	17	3	0	0	./.	4	2	6	3	47	29	47	29	6	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763325318	16	20423516	TA	T	509	PASS	ACSM5	CCDS10585.1	r.?	-	-	Del	intronic	D	20423516	20423526	1	28	484.005	-	-	9	1	1	ACSM5|CCDS10585.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACSM5|CCDS10585.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	6	3	12	27	43	27	43	3	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763326009	16	21884762	C	CAAAA	365	PASS	-	-	-	-	-	Ins	-	I	21884762	21884765	4	14	672.159	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	13	0	13	0	45	32	45	32	13	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763326991	16	23875233	TTC	T	269	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	intronic	D	23875233	23875251	2	10	269.36	-	-	8	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	1	4	1	49	46	49	46	4	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763328288	16	26118571	T	TAC	780	PASS	HS3ST4	ENST00000331351	r.?	-	-	Ins	intronic	I	26118571	26118587	2	56	684.201	-	-	7	1	-	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	21	21	21	0	0	./.	6	7	11	12	46	40	48	40	11	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763330649	16	30909171	GTC	G	300	PASS	CTF1	CCDS10694.1	r.?	-	-	Del	intronic	D	30909171	30909191	2	12	270.564	-	-	9	1	-	CTF1|CCDS10694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTF1|CCDS10694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	2	3	42	46	42	46	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763331437	16	32304538	CT	C	250	PASS	-	-	-	-	-	Del	-	D	32304538	32304547	1	12	595.241	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	11	0	15	0	58	0	58	0	15	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763331470	16	32334750	AAAG	A	295	PASS	-	-	-	-	-	Del	-	D	32334750	32334754	3	10	487.015	-	-	1	1	1	-	-	./.	0	0	0	0	34	40	34	40	0	0	./.	9	0	15	0	160	137	161	137	15	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763346664	16	89064472	T	TG	1169	PASS	-	-	-	-	-	Ins	-	I	89064472	89064480	1	121	1064.8	-	-	7	1	1	-	-	./.	0	0	0	0	16	4	16	5	0	0	./.	10	10	11	13	17	28	17	28	11	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763356826	17	21241973	GCTTGTTC	GATGTTT	406	PASS	-	-	-	-	-	Complex	-	DI	21241974	21241980	7	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	32	14	32	0	0	./.	1	13	0	0	71	109	71	109	1	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763360093	17	30088817	TAA	T	420	PASS	-	-	-	-	-	Del	-	D	30088817	30088820	2	18	378.747	-	-	2	1	1	-	-	./.	0	0	0	0	27	10	27	10	0	0	./.	5	2	7	3	31	36	31	36	7	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763360904	17	32115234	G	GA	300	PASS	ACCN1	CCDS42296.1	r.?	-	-	Ins	intronic	I	32115234	32115244	1	12	256.686	-	-	9	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	3	2	3	1	43	35	43	35	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763371024	17	55272430	TTC	T	269	PASS	-	-	-	-	-	Del	-	D	55272430	55272434	2	6	266.319	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	0	6	0	32	27	32	27	7	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763373297	17	60711054	A	AT	300	PASS	MRC2	CCDS11634.1	r.?	-	-	Ins	intronic	I	60711054	60711055	1	10	262.707	-	-	0	1	1	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	10	11	0	0	./.	4	1	5	1	25	17	27	17	5	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763388686	18	15385282	T	TA	255	PASS	-	-	-	-	-	Ins	-	I	15385282	15385288	1	15	321.422	-	-	5	1	1	-	-	./.	0	0	0	0	28	19	29	19	0	0	./.	2	4	4	8	64	77	64	78	4	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763390098	18	21906070	G	GA	300	PASS	OSBPL1A	CCDS11884.1	r.?	-	-	Ins	intronic	I	21906070	21906080	1	12	267.851	-	-	9	1	1	OSBPL1A|CCDS11884.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OSBPL1A|CCDS11884.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	3	3	51	29	51	29	3	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763390454	18	22888625	CA	C	269	PASS	ZNF521	CCDS32806.1	r.?	-	-	Del	intronic	D	22888625	22888627	1	6	267.851	-	-	1	1	1	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	0	5	0	3	13	30	13	30	0	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763391201	18	25197946	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	25197946	25197947	1	12	267.851	-	-	0	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	3	2	4	2	30	26	30	26	4	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763392783	18	29853698	AAG	A	300	PASS	FAM59A	CCDS11905.1	r.?	-	-	Del	intronic	D	29853698	29853716	2	10	270.862	-	-	8	1	-	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	1	4	25	32	25	32	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763395056	18	37570803	ATAG	A	389	PASS	-	-	-	-	-	Del	-	D	37570803	37570810	3	8	379.206	-	-	2	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	0	7	1	8	18	30	18	30	1	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763398949	18	49373675	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	49373675	49373682	1	100	964.265	-	-	6	1	1	-	-	./.	0	0	0	0	13	17	14	17	0	0	./.	9	9	13	11	32	41	33	42	13	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763400796	18	54417207	C	CT	360	PASS	WDR7	CCDS11962.1	r.?	-	-	Ins	intronic	I	54417207	54417214	1	7	321.422	-	-	6	1	1	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	4	18	4	0	0	./.	6	0	11	0	40	11	41	11	11	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763404368	18	63682639	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	63682639	63682649	1	16	428.562	-	-	9	1	1	-	-	./.	0	0	0	0	20	8	20	9	0	0	./.	7	1	10	3	31	15	31	15	10	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763405595	18	66600677	A	AT	420	PASS	CCDC102B	CCDS11996.2	r.?	-	-	Ins	intronic	I	66600677	66600683	1	14	374.992	-	-	5	1	1	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	1	10	3	38	28	38	29	10	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763409676	18	77588947	CTGTGTGTGCATGTGTCTGTATGTGGGTGTCTATGTGTGCGTGTGTGTAACATGTCCATGATGTGTGCATGTGTCTGTGTGTGGGTGTCTATGTGTGCGTGTGTGTAACGTGTCTGTGTGTGCATGTGTCTGTGTGTGGGTGTCTATGTGTGCGTGTGTGTAACATGTCCATGATGTGTGCATGTGTCTGTGTGTGGGTGTCTATGTGTGCGTGTGTGTAACATGTCCATGA	C	269	PASS	-	-	-	-	-	Del	-	D	77588947	77589185	231	12	261.831	-	-	1	1	-	-	-	./.	0	0	0	0	25	12	25	12	0	0	./.	2	3	0	0	45	35	45	35	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763411237	19	3561966	G	GT	780	PASS	RAX2	CCDS12112.1	r.?	-	-	Ins	intronic	I	3561966	3561975	1	44	697.037	-	-	8	1	1	RAX2|CCDS12112.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	RAX2|CCDS12112.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	10	4	13	21	30	21	30	4	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763423299	19	32101246	G	GT	840	PASS	ENSG00000232700	ENST00000441786	r.?	-	-	Ins	intronic	I	32101246	32101254	1	63	747.645	-	-	7	1	1	ENSG00000232700|ENST00000441786|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000232700|ENST00000441786|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	6	8	12	12	41	28	41	28	12	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763428101	19	44298640	C	CT	780	PASS	LYPD5	CCDS46096.1	r.?	-	-	Ins	downstream	I	44298640	44298649	1	54	691.017	-	-	8	1	1	LYPD5|CCDS46096.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF230|ENST00000421176|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	10	26	10	0	0	./.	5	8	10	10	39	26	39	26	10	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763429786	19	48013321	A	ACT	1440	PASS	NAPA	CCDS12702.1	r.?	-	-	Ins	intronic	I	48013321	48013326	2	165	1269.98	-	-	2	1	1	NAPA|CCDS12702.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAPA|CCDS12702.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	14	10	16	11	41	27	41	27	16	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763432453	19	53889132	GA	G	300	PASS	ZNF525	ENST00000467003	r.5394delA	c.?	p.?	Del	3'UTR variant	D	53889132	53889142	1	12	271.102	-	-	9	1	1	ZNF525|ENST00000467003|r.5394delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ZNF525|ENST00000467003|r.5394delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	11	18	11	0	0	./.	2	3	2	6	21	20	21	20	2	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763438778	2	11414690	C	CA	420	PASS	ROCK2	CCDS42654.1	r.?	-	-	Ins	intronic	I	11414690	11414697	1	20	372.172	-	-	6	1	1	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	4	3	5	4	32	26	32	27	5	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763441519	2	20091639	G	GA	300	PASS	TTC32	CCDS33151.1	r.?	-	-	Ins	downstream	I	20091639	20091649	1	12	253.194	-	-	9	1	1	TTC32|CCDS33151.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TTC32|CCDS33151.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	24	17	24	18	0	0	./.	2	3	2	4	30	30	30	31	2	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763442968	2	24805231	C	CA	840	PASS	NCOA1	CCDS1713.1	r.?	-	-	Ins	intronic	I	24805231	24805239	1	60	743.742	-	-	7	1	1	NCOA1|CCDS1713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NCOA1|CCDS1713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	9	5	14	9	25	28	25	28	14	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763448476	2	40299267	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	40299267	40299277	1	24	422.931	-	-	9	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	3	5	7	13	21	29	21	29	7	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763453564	2	55680819	TAATA	T	300	PASS	-	-	-	-	-	Del	-	D	55680819	55680828	4	12	268.847	-	-	2	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	2	3	4	5	28	37	28	37	4	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763454802	2	60347061	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	60347061	60347070	1	50	686.962	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	19	13	0	0	./.	9	4	14	5	39	24	40	24	14	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763457130	2	66833454	A	AT	358	PASS	-	-	-	-	-	Ins	-	I	66833454	66833462	1	18	371.57	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	16	0	0	./.	5	2	6	2	30	19	30	19	6	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763467262	2	101901040	C	CA	300	PASS	RNF149	CCDS2051.1	r.?	-	-	Ins	intronic	I	101901040	101901049	1	12	256.204	-	-	8	1	1	RNF149|CCDS2051.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF149|CCDS2051.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	3	3	25	37	25	37	3	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763468196	2	105172089	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	105172089	105172098	1	6	265.837	-	-	8	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	0	5	1	7	23	22	23	23	1	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763469919	2	111471927	C	CCATAT	389	PASS	-	-	-	-	-	Ins	-	I	111471927	111471933	5	20	355.314	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	4	3	8	26	24	26	25	3	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763471822	2	117547887	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	117547887	117547889	1	88	903.846	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	18	0	0	./.	7	10	8	13	16	30	17	31	8	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763485398	2	159078982	T	TTC	300	PASS	CCDC148	CCDS33304.1	r.?	-	-	Ins	intronic	I	159078982	159079002	2	6	259.214	-	-	9	1	-	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	0	5	0	1	25	36	25	37	0	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763489876	2	172818634	T	TA	660	PASS	HAT1	CCDS2245.1	r.?	-	-	Ins	intronic	I	172818634	172818642	1	40	584.842	-	-	7	1	1	HAT1|CCDS2245.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HAT1|CCDS2245.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	7	4	10	5	32	22	32	22	10	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763492880	2	182135191	A	AGGAC	298	PASS	-	-	-	-	-	Ins	-	I	182135191	182135196	4	15	308.167	-	-	1	1	1	-	-	./.	0	0	0	0	19	10	20	10	0	0	./.	2	4	4	6	27	15	28	16	4	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763495748	2	191592949	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	191592949	191592957	1	90	903.846	-	-	7	1	1	-	-	./.	0	0	0	0	19	13	19	14	0	0	./.	9	8	22	14	38	31	38	31	22	14	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763504501	2	217628309	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	217628309	217628318	1	49	636.805	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	6	7	8	34	29	35	29	7	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763511729	2	238697098	C	CTAT	538	PASS	-	-	-	-	-	Ins	-	I	238697098	238697100	3	36	519.633	-	-	0	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	5	6	6	26	21	26	22	6	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763511955	2	239287253	TGA	T	360	PASS	TRAF3IP1	CCDS33415.1	r.?	-	-	Del	intronic	D	239287253	239287273	2	15	322.617	-	-	9	1	1	TRAF3IP1|CCDS33415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAF3IP1|CCDS33415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	4	3	28	29	28	29	4	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763512257	2	240370651	TA	T	300	PASS	-	-	-	-	-	Del	-	D	240370651	240370653	1	6	266.439	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	0	10	0	25	19	25	19	10	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763516435	20	7195327	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	7195327	7195334	1	70	802.672	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	14	14	0	0	./.	9	6	10	10	39	37	39	39	10	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763521983	20	22177077	CA	C	403	PASS	-	-	-	-	-	Del	-	D	22177077	22177087	1	90	921.976	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	9	8	11	27	31	28	31	9	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763522229	20	22929544	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	22929544	22929560	2	12	271.169	-	-	7	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	3	2	48	41	48	41	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763524631	20	29614398	CT	C	438	PASS	FRG1B	ENST00000278882	r.?	-	-	Del	intronic	D	29614398	29614400	1	14	705.041	-	-	1	1	1	FRG1B|ENST00000278882|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FRG1B|ENST00000278882|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	64	73	64	73	0	0	./.	0	13	0	15	63	223	63	223	0	15	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763531388	20	45344722	A	AC	1018	PASS	SLC2A10	CCDS13402.1	r.?	-	-	Ins	intronic	I	45344722	45344729	1	99	964.169	-	-	6	1	1	SLC2A10|CCDS13402.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC2A10|CCDS13402.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	10	8	12	11	39	53	39	53	12	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763541251	21	10723786	T	TTTC	336	PASS	-	-	-	-	-	Ins	-	I	10723786	10723790	3	24	630.871	-	-	1	1	1	-	-	./.	0	0	0	0	171	225	172	225	0	0	./.	11	1	32	5	534	364	539	364	32	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763554344	21	45307467	GCA	G	300	PASS	AGPAT3	CCDS13703.1	r.?	-	-	Del	intronic	D	45307467	45307484	2	12	271.894	-	-	8	1	1	AGPAT3|CCDS13703.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AGPAT3|CCDS13703.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	2	3	2	3	20	27	20	27	2	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763565510	22	44321025	A	AC	420	PASS	PNPLA3	CCDS14054.1	r.?	-	-	Ins	intronic	I	44321025	44321032	1	18	377.989	-	-	6	1	1	PNPLA3|CCDS14054.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PNPLA3|CCDS14054.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	9	13	0	0	./.	5	2	6	3	20	21	20	21	6	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763567226	22	49626914	CTTG	C	327	PASS	ENSG00000231223	ENST00000412147	r.?	-	-	Del	intronic	D	49626914	49626923	3	18	378.591	-	-	2	1	1	ENSG00000231223|ENST00000412147|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000231223|ENST00000412147|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	5	2	6	2	17	15	17	15	6	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763580743	3	41115168	AGTT	A	1167	PASS	-	-	-	-	-	Del	-	D	41115168	41115174	3	132	1131.42	-	-	1	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	11	10	12	13	33	25	33	25	12	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763584784	3	53882532	T	TC	480	PASS	CHDH	CCDS2873.1	r.?	-	-	Ins	upstream	I	53882532	53882539	1	21	424.998	-	-	6	1	1	CHDH|CCDS2873.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	IL17RB|CCDS2874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	2	6	3	9	20	30	21	30	3	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763587890	3	63029583	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	63029583	63029591	1	9	424.998	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	19	12	0	0	./.	0	8	1	10	25	35	25	35	1	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763594017	3	79094806	T	TA	480	PASS	ROBO1	ENST00000464233	r.?	-	-	Ins	intronic	I	79094806	79094814	1	24	426.202	-	-	7	1	1	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	5	3	8	4	26	29	26	30	8	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763597442	3	90434059	C	CT	298	PASS	-	-	-	-	-	Ins	-	I	90434059	90434067	1	33	638.701	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	14	0	0	./.	10	2	8	5	31	18	35	19	12	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763600582	3	104751547	TAC	T	900	PASS	-	-	-	-	-	Del	-	D	104751547	104751560	2	72	806.354	-	-	6	1	-	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	8	7	10	7	34	18	34	18	10	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763608681	3	129830922	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	129830922	129830923	1	12	317.845	-	-	0	1	1	-	-	./.	0	0	0	0	14	7	15	7	0	0	./.	1	5	0	0	15	22	16	22	1	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763609311	3	132045302	C	CA	720	PASS	ACPP	CCDS3073.1	r.?	-	-	Ins	intronic	I	132045302	132045310	1	49	637.497	-	-	7	1	1	ACPP|CCDS3073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACPP|CCDS3073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	6	6	8	31	29	31	29	6	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763609644	3	133243908	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	133243908	133243917	1	20	372.927	-	-	8	1	1	-	-	./.	0	0	0	0	18	8	20	8	0	0	./.	4	3	8	8	26	17	26	17	8	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763612453	3	142227778	A	AG	360	PASS	ATR	CCDS3124.1	r.?	-	-	Ins	intronic	I	142227778	142227779	1	12	308.212	-	-	0	1	-	ATR|CCDS3124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATR|CCDS3124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	1	5	4	9	24	21	24	22	4	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763618806	3	163233796	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	163233796	163233805	1	24	426.202	-	-	8	1	1	-	-	./.	0	0	0	0	21	11	21	12	0	0	./.	3	5	4	7	22	27	24	27	4	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763622375	3	175023314	C	CT	269	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Ins	intronic	I	175023314	175023324	1	12	265.172	-	-	9	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	2	3	2	29	28	29	28	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763634774	4	13327813	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	13327813	13327820	1	20	372.755	-	-	6	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	5	5	29	24	29	24	5	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763634811	4	13540517	C	CA	300	PASS	NKX3-2	CCDS3410.1	r.?	-	-	Ins	downstream	I	13540517	13540526	1	12	265.652	-	-	8	1	1	NKX3-2|CCDS3410.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NKX3-2|CCDS3410.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	15	15	17	15	0	0	./.	3	2	6	3	32	28	32	28	6	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763637823	4	23639636	AC	A	420	PASS	-	-	-	-	-	Del	-	D	23639636	23639638	1	20	376.97	-	-	1	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	4	3	4	3	22	17	22	17	4	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763640608	4	31947109	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	31947109	31947129	2	16	323.117	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	3	3	36	25	36	25	3	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763641177	4	34149541	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	34149541	34149551	1	12	265.652	-	-	9	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	3	2	3	2	28	30	29	30	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763649331	4	58744979	AT	A	780	PASS	-	-	-	-	-	Del	-	D	58744979	58744981	1	56	700.087	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	6	8	7	29	26	29	26	8	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763650674	4	62582870	A	AT	600	PASS	LPHN3	ENST00000512091	r.?	-	-	Ins	intronic	I	62582870	62582879	1	35	532.508	-	-	8	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	6	7	7	30	31	30	31	7	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763652513	4	68150254	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	68150254	68150261	1	45	639.009	-	-	6	1	1	-	-	./.	0	0	0	0	9	21	10	21	0	0	./.	4	8	8	12	34	41	34	41	8	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763661674	4	96849172	CTT	C	480	PASS	-	-	-	-	-	Del	-	D	96849172	96849176	2	9	430.823	-	-	3	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	8	0	8	1	30	26	30	26	8	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763666216	4	113583122	GATA	G	420	PASS	LARP7	CCDS3701.2	r.?	-	-	Del	downstream	D	113583122	113583129	3	20	376.97	-	-	2	1	1	LARP7|CCDS3701.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LARP7|CCDS3701.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	3	4	6	5	31	25	31	25	6	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763667705	4	118224101	CA	C	300	PASS	-	-	-	-	-	Del	-	D	118224101	118224104	1	12	268.06	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	4	4	17	20	17	20	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763667971	4	118968697	T	TA	1020	PASS	NDST3	CCDS3708.1	r.?	-	-	Ins	intronic	I	118968697	118968703	1	90	905.263	-	-	5	1	1	NDST3|CCDS3708.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NDST3|CCDS3708.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	9	8	10	10	23	29	23	29	10	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763671906	4	130832327	TGTATACATG	T	464	PASS	-	-	-	-	-	Del	-	D	130832327	130832338	9	81	861.645	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	8	8	8	8	20	18	20	18	8	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763674828	4	139726972	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	139726972	139726981	1	16	319.505	-	-	8	1	1	-	-	./.	0	0	0	0	26	10	26	11	0	0	./.	3	3	5	4	25	32	26	32	5	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763678037	4	150889478	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	150889478	150889486	1	12	266.254	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	5	2	26	25	26	25	5	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763680921	4	159702503	GTTCTTGTGAGGCAAGA	G	493	PASS	FNIP2	CCDS47155.1	r.?	-	-	Del	intronic	D	159702503	159702521	16	84	914.294	-	-	1	1	1	FNIP2|CCDS47155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNIP2|CCDS47155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	11	6	12	6	27	20	27	20	12	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763683845	4	167465530	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	167465530	167465538	1	16	319.505	-	-	7	1	1	-	-	./.	0	0	0	0	26	21	26	21	0	0	./.	3	3	7	10	22	29	23	30	7	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763685799	4	173332444	G	GA	360	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Ins	intronic	I	173332444	173332454	1	7	317.096	-	-	9	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	0	6	2	9	29	26	29	26	2	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763686469	4	175332587	CA	C	720	PASS	-	-	-	-	-	Del	-	D	175332587	175332594	1	48	645.03	-	-	6	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	7	5	8	30	28	30	28	5	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763698810	5	13460953	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	13460953	13460961	1	12	319.032	-	-	7	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	1	5	1	6	7	28	7	28	1	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763699920	5	16612905	ATG	A	300	PASS	FAM134B	CCDS43304.1	r.?	-	-	Del	intronic	D	16612905	16612920	2	10	266.963	-	-	7	1	1	FAM134B|CCDS43304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM134B|CCDS43304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	1	4	2	36	31	36	31	4	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763701157	5	19389043	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	19389043	19389048	1	12	266.361	-	-	4	1	1	-	-	./.	0	0	0	0	10	1	10	1	0	0	./.	3	2	3	3	34	21	34	22	3	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763704504	5	28582965	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	28582965	28582975	1	40	584.189	-	-	9	1	1	-	-	./.	0	0	0	0	17	19	18	19	0	0	./.	7	4	11	5	38	25	40	25	11	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763723624	5	88999417	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	88999417	88999426	1	64	744.608	-	-	8	1	1	-	-	./.	0	0	0	0	21	11	22	11	0	0	./.	7	7	9	11	29	36	29	36	9	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763725489	5	95839603	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	95839603	95839609	1	42	585.393	-	-	5	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	6	5	10	5	43	35	46	35	10	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763727609	5	101770518	AT	A	480	PASS	SLCO6A1	CCDS34206.1	r.?	-	-	Del	intronic	D	101770518	101770528	1	24	430.995	-	-	9	1	1	SLCO6A1|CCDS34206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLCO6A1|CCDS34206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	5	9	8	31	28	31	28	9	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763733692	5	120214907	ACT	A	1080	PASS	-	-	-	-	-	Del	-	D	120214907	120214914	2	99	969.738	-	-	3	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	8	10	9	14	25	30	25	30	9	14	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763745421	5	154929718	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	154929718	154929737	2	12	268.168	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	2	37	38	37	38	3	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763751440	5	172036053	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	172036053	172036058	1	72	799.084	-	-	4	1	1	-	-	./.	0	0	0	0	21	12	22	12	0	0	./.	8	7	13	9	38	30	38	30	13	9	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763751904	5	173189631	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	173189631	173189632	1	56	692.54	-	-	0	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	7	6	7	8	23	32	23	32	7	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763753627	5	177603205	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	177603205	177603214	1	12	264.555	-	-	8	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	2	3	6	5	25	22	26	25	6	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763755012	5	180153643	TA	T	300	PASS	-	-	-	-	-	Del	-	D	180153643	180153652	1	10	269.372	-	-	8	1	1	-	-	./.	0	0	0	0	25	14	25	14	0	0	./.	4	1	6	7	43	32	43	32	6	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763759652	6	12779619	C	CA	569	PASS	PHACTR1	ENST00000379350	r.?	-	-	Ins	intronic	I	12779619	12779629	1	36	530.761	-	-	9	1	1	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	5	5	7	6	28	27	28	27	7	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763763481	6	23499587	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	23499587	23499597	1	16	319.66	-	-	9	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	3	3	4	5	15	22	15	22	4	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763779296	6	71357130	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	71357130	71357134	1	12	318.456	-	-	3	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	1	5	1	5	19	22	20	22	1	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763783297	6	84710205	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	84710205	84710212	1	24	427.017	-	-	6	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	3	5	6	5	21	30	21	30	6	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763787425	6	99512961	TAGC	T	509	PASS	-	-	-	-	-	Del	-	D	99512961	99512969	3	30	485.812	-	-	2	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	5	4	6	4	28	13	28	13	6	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763790755	6	111065735	T	TA	269	PASS	CDK19	CCDS5085.1	r.?	-	-	Ins	intronic	I	111065735	111065745	1	10	259.661	-	-	9	1	1	CDK19|CCDS5085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDK19|CCDS5085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	12	6	12	0	0	./.	1	4	2	4	15	26	15	26	2	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763792574	6	117609239	A	AC	540	PASS	ROS1	CCDS5116.1	r.?	-	-	Ins	downstream	I	117609239	117609246	1	28	480.394	-	-	6	1	1	ROS1|CCDS5116.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	ROS1|CCDS5116.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	12	13	12	13	0	0	./.	6	3	6	4	14	12	14	12	6	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763796125	6	131275604	AAAACAAGATAATCCATT	A	319	PASS	EPB41L2	CCDS5141.1	r.?	-	-	Del	intronic	D	131275604	131275639	17	40	591.964	-	-	2	1	1	EPB41L2|CCDS5141.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPB41L2|CCDS5141.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	4	7	4	7	21	15	21	15	4	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763797485	6	136990479	C	CGCA	329	PASS	MAP3K5	CCDS5179.1	r.1668_1669insugc	c.1307_1308insTGC	p.A436_V437insA	Ins	inframe	I	136990479	136990483	3	15	313.038	-	-	1	1	1	MAP3K5|CCDS5179.1|r.1668_1669insugc|c.1307_1308insTGC|p.A436_V437insA|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	MAP3K5|CCDS5179.1|r.1668_1669insugc|c.1307_1308insTGC|p.A436_V437insA|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	9	2	23	14	23	15	9	2	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763799421	6	144872968	GTCT	G	360	PASS	UTRN	CCDS34547.1	r.?	-	-	Del	intronic	D	144872968	144872976	3	15	323.875	-	-	2	1	1	UTRN|CCDS34547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UTRN|CCDS34547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	8	3	23	16	23	16	8	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763809637	7	6708097	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	6708097	6708107	1	28	476.372	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	6	3	7	10	21	28	21	28	7	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763810034	7	7855669	T	TA	300	PASS	ENSG00000219545	ENST00000406829	r.?	-	-	Ins	intronic	I	7855669	7855679	1	12	265.454	-	-	9	1	1	ENSG00000219545|ENST00000406829|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000219545|ENST00000406829|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	14	17	0	0	./.	2	3	4	7	26	27	26	27	4	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763823226	7	48289574	G	GCCGTCCCACAAGATTGCCCCTACTTCAGACC	261	PASS	ABCA13	CCDS47584.1	r.?	-	-	Ins	intronic	I	48289574	48289577	31	28	317.428	-	-	0	1	1	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	12	11	0	0	./.	3	6	0	0	30	22	33	29	3	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763830895	7	68450265	C	CT	538	PASS	-	-	-	-	-	Ins	-	I	68450265	68450275	1	27	518.265	-	-	9	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	8	2	15	6	29	15	29	15	15	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763843628	7	106558060	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	106558060	106558069	1	28	469.749	-	-	8	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	6	3	7	6	25	33	25	33	7	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763849135	7	125069940	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	125069940	125069948	1	12	266.658	-	-	7	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	4	4	31	23	32	23	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763849763	7	126971631	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	126971631	126971639	1	20	373.321	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	5	4	32	24	33	24	5	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763852711	7	134471347	A	AT	300	PASS	CALD1	CCDS5836.1	r.?	-	-	Ins	intronic	I	134471347	134471357	1	10	266.056	-	-	9	1	1	CALD1|CCDS5836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CALD1|CCDS5836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	1	4	2	4	16	27	18	27	2	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763853548	7	136829163	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	136829163	136829171	1	16	319.99	-	-	7	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	3	3	4	3	29	19	29	19	4	3	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763853746	7	137523252	T	TA	900	PASS	DGKI	CCDS5845.1	r.?	-	-	Ins	intronic	I	137523252	137523259	1	60	797.566	-	-	6	1	1	DGKI|CCDS5845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DGKI|CCDS5845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	11	4	15	11	29	32	29	32	15	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763857006	7	147563853	G	GGT	509	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	147563853	147563854	2	18	474.566	-	-	0	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	1	8	0	0	12	24	12	24	1	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763858566	7	151968180	T	TAA	321	PASS	BAGE3	CCDS5931.1	r.?	-	-	Ins	intronic	I	151968180	151968183	2	10	474.566	-	-	2	1	1	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	29	30	29	0	0	./.	0	9	0	12	44	136	44	137	0	12	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763858639	7	151985769	GA	G	305	PASS	BAGE3	CCDS5931.1	r.?	-	-	Del	intronic	D	151985769	151985773	1	10	485.403	-	-	3	1	1	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	9	0	10	0	120	21	120	21	10	0	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763860740	7	157178220	A	AT	365	PASS	DNAJB6	CCDS5946.1	r.?	-	-	Ins	intronic	I	157178220	157178228	1	24	479.382	-	-	7	1	1	DNAJB6|CCDS5946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAJB6|CCDS5946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	7	2	9	5	26	27	27	27	9	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763862056	8	2114242	AT	A	456	PASS	-	-	-	-	-	Del	-	D	2114242	2114252	1	24	429.637	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	5	4	5	6	24	6	24	4	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763865672	8	11572696	TA	T	300	PASS	GATA4	CCDS5983.1	r.?	-	-	Del	intronic	D	11572696	11572705	1	12	270.028	-	-	8	1	1	GATA4|CCDS5983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GATA4|CCDS5983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	4	4	22	17	22	17	4	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763869186	8	20515761	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	20515761	20515768	1	60	744.64	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	9	5	11	6	23	24	23	24	11	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763874537	8	36189056	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	36189056	36189073	2	10	270.028	-	-	8	1	-	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	1	4	1	4	35	30	35	30	1	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763879622	8	56119140	GA	G	540	PASS	XKR4	CCDS34893.1	r.?	-	-	Del	intronic	D	56119140	56119149	1	18	486.051	-	-	8	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	8	1	9	1	24	15	24	15	9	1	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763883698	8	70091850	G	GA	869	PASS	-	-	-	-	-	Ins	-	I	70091850	70091860	1	72	796.84	-	-	9	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	8	7	11	8	32	26	32	26	11	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763886781	8	80448041	CG	C	816	PASS	-	-	-	-	-	Del	-	D	80448041	80448043	1	55	739.824	-	-	1	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	10	4	13	6	21	14	21	14	13	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763887244	8	82288526	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	82288526	82288535	1	28	480.633	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	8	0	0	./.	3	6	3	5	24	36	24	38	3	6	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763891392	8	96062447	TC	T	540	PASS	C8orf38	CCDS6266.2	r.?	-	-	Del	intronic	D	96062447	96062451	1	30	486.051	-	-	3	1	1	C8orf38|CCDS6266.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf38|CCDS6266.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	5	6	8	25	27	25	27	6	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763893909	8	104279013	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	104279013	104279020	1	21	427.229	-	-	6	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	6	2	7	26	30	26	30	2	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763902090	8	130730395	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	130730395	130730404	1	18	373.223	-	-	8	1	1	-	-	./.	0	0	0	0	21	25	21	25	0	0	./.	5	2	7	4	31	34	31	34	7	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763904216	8	137770178	AT	A	360	PASS	-	-	-	-	-	Del	-	D	137770178	137770184	1	16	324.034	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	4	5	26	18	26	18	4	5	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763910514	9	12593528	CTTA	C	958	PASS	-	-	-	-	-	Del	-	D	12593528	12593540	3	84	920.378	-	-	3	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	6	11	7	13	15	21	15	21	7	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763921807	9	72166930	G	GT	960	PASS	APBA1	CCDS6630.1	r.?	-	-	Ins	intronic	I	72166930	72166935	1	72	856.605	-	-	4	1	1	APBA1|CCDS6630.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	APBA1|CCDS6630.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	12	0	0	./.	11	5	13	10	23	23	23	23	13	10	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763934461	9	118875018	G	GA	1260	PASS	-	-	-	-	-	Ins	-	I	118875018	118875028	1	130	1122.49	-	-	9	1	1	-	-	./.	0	0	0	0	15	27	15	27	0	0	./.	12	9	16	13	31	24	31	24	16	13	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763938867	9	134005238	TCCTCCACCCC	T	290	PASS	NUP214	CCDS6940.1	r.?	-	-	Del	intronic	D	134005238	134005249	10	27	541.399	-	-	1	1	1	NUP214|CCDS6940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP214|CCDS6940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	2	8	2	8	8	23	8	23	2	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763942886	X	11496801	G	GA	480	PASS	ARHGAP6	CCDS14140.1	r.?	-	-	Ins	intronic	I	11496801	11496810	1	21	428.585	-	-	8	1	1	ARHGAP6|CCDS14140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP6|CCDS14140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	6	2	11	4	21	11	21	11	11	4	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763943679	X	14984112	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	14984112	14984120	1	42	589.304	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	5	6	9	8	23	18	23	18	9	8	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763949768	X	45086373	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	45086373	45086379	1	55	749.421	-	-	5	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	10	4	15	7	22	17	22	17	15	7	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763955182	X	79843035	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	79843035	79843044	1	42	589.304	-	-	8	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	5	12	11	21	25	21	25	12	11	1	1	1	1	1	1	1	1
2772655	PD7311a	PD7311b	2763970078	X	154106629	G	GA	660	PASS	F8	CCDS35457.1	r.?	-	-	Ins	intronic	I	154106629	154106637	1	42	589.304	-	-	7	1	1	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	6	5	8	5	22	15	22	16	8	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753893545	1	22739920	TG	T	480	PASS	-	-	-	-	-	Del	-	D	22739920	22739924	1	24	428.064	-	-	3	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	5	3	9	3	14	16	14	16	9	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753898468	1	40332155	TGAA	T	625	PASS	TRIT1	CCDS30681.1	r.?	-	-	Del	intronic	D	40332155	40332161	3	54	698.313	-	-	1	1	1	TRIT1|CCDS30681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIT1|CCDS30681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	8	5	8	17	22	17	22	5	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753899413	1	43785584	AC	A	360	PASS	TIE1	CCDS482.1	r.?	-	-	Del	intronic	D	43785584	43785590	1	16	321.048	-	-	5	1	1	TIE1|CCDS482.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TIE1|CCDS482.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	5	3	16	5	16	5	5	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753901275	1	51178551	T	TG	269	PASS	FAF1	CCDS554.1	r.?	-	-	Ins	intronic	I	51178551	51178559	1	6	265.433	-	-	7	1	1	FAF1|CCDS554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAF1|CCDS554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	11	4	11	0	0	./.	0	5	3	6	13	16	13	19	3	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753922161	1	143257817	TGA	T	275	PASS	-	-	-	-	-	Del	-	D	143257817	143257821	2	16	430.472	-	-	1	1	1	-	-	./.	0	0	0	0	33	35	33	35	0	0	./.	7	1	9	1	120	38	120	38	9	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753945247	1	214039127	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	214039127	214039130	1	24	478.26	-	-	2	1	1	-	-	./.	0	0	0	0	5	12	6	12	0	0	./.	2	7	4	7	21	31	22	31	4	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753946327	1	217247106	AAGG	A	360	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	217247106	217247114	3	15	322.854	-	-	2	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	2	4	4	4	19	25	19	25	4	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753946790	1	218738973	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	218738973	218738975	1	35	531.467	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	6	6	7	30	22	30	22	6	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753952214	1	234876205	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	234876205	234876215	1	10	260.014	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	1	6	29	33	29	34	1	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753965210	10	20713125	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	20713125	20713134	1	20	373.937	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	17	0	0	./.	4	3	9	4	16	18	16	18	9	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753975126	10	55673503	C	CA	257	PASS	PCDH15	CCDS44404.1	r.?	-	-	Ins	intronic	I	55673503	55673513	1	6	267.098	-	-	9	1	-	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	5	0	5	1	30	25	33	25	5	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753975814	10	57621627	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	57621627	57621630	1	12	267.098	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	5	6	19	23	19	23	5	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753977270	10	62353301	A	AT	480	PASS	ANK3	ENST00000373827	r.?	-	-	Ins	intronic	I	62353301	62353311	1	25	427.357	-	-	9	1	1	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	7	5	24	18	24	18	7	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753984054	10	87648886	TGGAG	T	569	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	87648886	87648894	4	36	539.012	-	-	1	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	5	5	0	0	18	18	18	18	5	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753985336	10	92487261	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	92487261	92487263	1	24	480.776	-	-	1	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	2	7	2	7	17	15	17	15	2	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753987858	10	101178613	TG	T	358	PASS	GOT1	CCDS7479.1	r.?	-	-	Del	intronic	D	101178613	101178616	1	18	378.152	-	-	2	1	1	GOT1|CCDS7479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GOT1|CCDS7479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	5	5	8	15	21	15	21	5	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753990530	10	111103290	TA	T	600	PASS	-	-	-	-	-	Del	-	D	111103290	111103293	1	36	540.216	-	-	2	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	5	5	6	7	17	16	17	16	6	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753993968	10	122412743	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	122412743	122412751	1	18	371.529	-	-	7	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	2	5	3	10	23	21	23	22	3	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753997526	10	134213206	ATGTGG	A	596	PASS	PWWP2B	CCDS7667.2	r.?	-	-	Del	intronic	D	134213206	134213214	5	48	647.658	-	-	1	1	1	PWWP2B|CCDS7667.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PWWP2B|CCDS7667.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	7	7	8	12	19	12	19	7	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2753997683	10	135113669	T	TA	540	PASS	TUBGCP2	CCDS7676.1	r.?	-	-	Ins	intronic	I	135113669	135113679	1	28	479.572	-	-	9	1	1	TUBGCP2|CCDS7676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TUBGCP2|CCDS7676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	6	3	10	6	25	18	25	19	10	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754000010	11	6263300	GATA	G	300	PASS	CNGA4	CCDS31408.1	r.?	-	-	Del	intronic	D	6263300	6263319	3	10	270.522	-	-	6	1	1	CNGA4|CCDS31408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNGA4|CCDS31408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	4	1	5	1	25	33	25	33	5	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754001966	11	11501172	C	CA	600	PASS	GALNTL4	CCDS7807.1	r.?	-	-	Ins	intronic	I	11501172	11501179	1	36	535.024	-	-	6	1	1	GALNTL4|CCDS7807.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL4|CCDS7807.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	5	5	7	7	20	19	20	19	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754002659	11	13803990	AT	A	420	PASS	-	-	-	-	-	Del	-	D	13803990	13803995	1	18	378.731	-	-	4	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	2	7	6	21	18	21	18	7	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754008439	11	33168645	TG	T	569	PASS	CSTF3	CCDS7883.1	r.?	-	-	Del	intronic	D	33168645	33168649	1	36	541.044	-	-	3	1	1	CSTF3|CCDS7883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSTF3|CCDS7883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	5	6	5	16	15	16	15	6	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754009365	11	36799583	A	ATATTC	598	PASS	-	-	-	-	-	Ins	-	I	36799583	36799595	5	40	562.036	-	-	2	1	1	-	-	./.	0	0	0	0	14	15	14	16	0	0	./.	7	4	8	5	23	13	24	13	8	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754016650	11	66384599	CG	C	540	PASS	RBM14	CCDS8147.1	r.?	-	-	Del	intronic	D	66384599	66384605	1	30	480.919	-	-	5	1	1	RBM14|CCDS8147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM14|CCDS8147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	4	6	4	10	15	10	15	6	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754019621	11	76941475	TCA	T	360	PASS	GDPD4	CCDS8249.1	r.?	-	-	Del	intronic	D	76941475	76941478	2	15	324.627	-	-	1	1	1	GDPD4|CCDS8249.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDPD4|CCDS8249.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	7	7	20	16	20	16	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754020564	11	80143196	TTTATA	T	569	PASS	-	-	-	-	-	Del	-	D	80143196	80143203	5	32	541.045	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	7	4	7	17	23	17	23	4	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754021354	11	83002581	GCTAGGATACGCAAGGATTGCA	G	377	PASS	-	-	-	-	-	Del	-	D	83002581	83002603	21	54	703.358	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	8	5	5	4	19	14	22	15	8	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754035925	11	134505057	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	134505057	134505060	1	21	428.019	-	-	2	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	6	2	6	9	14	9	14	2	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754036564	12	1380357	CTT	C	660	PASS	ERC1	CCDS8508.1	r.?	-	-	Del	intronic	D	1380357	1380362	2	42	595.26	-	-	4	1	1	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	1	16	1	0	0	./.	5	6	6	7	17	17	17	17	6	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754038187	12	7091060	GT	G	480	PASS	ENSG00000111684	CCDS8572.1	r.485delA	c.371delA	p.Y124fs*25	Del	frameshift	D	7091060	7091062	1	24	432.916	-	-	1	1	1	ENSG00000111684|CCDS8572.1|r.485delA|c.371delA|p.Y124fs*25|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ENSG00000111684|CCDS8572.1|r.485delA|c.371delA|p.Y124fs*25|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	14	13	14	0	0	./.	5	3	5	7	17	10	17	10	5	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754047945	12	39719505	CTAAA	C	420	PASS	KIF21A	CCDS31773.1	r.?	-	-	Del	intronic	D	39719505	39719514	4	20	378.802	-	-	2	1	1	KIF21A|CCDS31773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF21A|CCDS31773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	4	3	6	6	12	14	12	14	6	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754053699	12	61071303	TTA	T	900	PASS	-	-	-	-	-	Del	-	D	61071303	61071307	2	72	808.707	-	-	1	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	7	8	8	9	15	18	15	18	8	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754055494	12	67362815	TTAAG	T	509	PASS	-	-	-	-	-	Del	-	D	67362815	67362822	4	30	487.031	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	4	7	5	22	12	22	12	7	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754058156	12	77098822	CTT	C	840	PASS	-	-	-	-	-	Del	-	D	77098822	77098826	2	63	757.001	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	8	8	9	21	23	21	23	8	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754064376	12	99602613	C	CT	660	PASS	ANKS1B	ENST00000329257	r.?	-	-	Ins	intronic	I	99602613	99602622	1	40	588.637	-	-	8	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	14	17	0	0	./.	4	7	7	12	21	33	21	33	7	12	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754066494	12	107087474	TAGTC	T	718	PASS	RFX4	CCDS9106.1	r.?	-	-	Del	intronic	D	107087474	107087481	4	50	702.284	-	-	1	1	1	RFX4|CCDS9106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX4|CCDS9106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	9	5	10	12	23	12	23	5	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754091385	13	71009087	CAT	C	480	PASS	-	-	-	-	-	Del	-	D	71009087	71009092	2	21	433.279	-	-	2	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	2	6	6	8	19	20	19	20	6	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754094710	13	81863330	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	81863330	81863337	1	72	804.497	-	-	6	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	8	7	9	9	20	23	20	23	9	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754101877	13	105829142	GT	G	540	PASS	-	-	-	-	-	Del	-	D	105829142	105829146	1	30	488.117	-	-	3	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	5	5	5	13	8	13	8	5	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754107970	14	29491310	ATTTC	A	449	PASS	-	-	-	-	-	Del	-	D	29491310	29491322	4	24	429.58	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	5	6	6	18	18	18	18	6	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754109955	14	35526308	GT	G	600	PASS	FAM177A1	CCDS41944.1	r.?	-	-	Del	intronic	D	35526308	35526312	1	35	542.996	-	-	3	1	1	FAM177A1|CCDS41944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM177A1|CCDS41944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	6	4	7	5	18	18	18	18	7	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754111841	14	41723703	CT	C	600	PASS	-	-	-	-	-	Del	-	D	41723703	41723705	1	35	542.996	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	4	6	5	7	20	13	20	13	5	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754125735	14	91429028	TTTAACGTAGTACAAAATTTTGGCACGATTCCAAAATTGTAAGAACAATACAAAGAATCCCTATATGCTCA	T	348	PASS	RPS6KA5	CCDS9893.1	r.?	-	-	Del	intronic	D	91429028	91429102	70	48	650.993	-	-	1	1	1	RPS6KA5|CCDS9893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS6KA5|CCDS9893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	7	5	0	0	13	12	20	17	7	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754126997	14	95758342	CTG	C	420	PASS	CLMN	CCDS9933.1	r.?	-	-	Del	intronic	D	95758342	95758347	2	8	380.097	-	-	2	1	1	CLMN|CCDS9933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLMN|CCDS9933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	0	7	1	21	11	21	11	7	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754127102	14	96044394	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	96044394	96044397	1	42	590.071	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	6	7	7	21	16	21	16	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754132893	15	26576232	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	26576232	26576237	1	12	268.582	-	-	4	1	1	-	-	./.	0	0	0	0	15	14	16	14	0	0	./.	3	2	3	2	24	18	24	18	3	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754133693	15	29560580	A	AT	360	PASS	NDNL2	CCDS10023.1	r.1453_1454insa	c.?	p.?	Ins	3'UTR variant	I	29560580	29560589	1	16	322.298	-	-	8	1	1	NDNL2|CCDS10023.1|r.1453_1454insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	NDNL2|CCDS10023.1|r.1453_1454insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	6	4	18	17	18	17	6	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754137431	15	42094047	T	TA	809	PASS	MAPKBP1	CCDS32201.1	r.?	-	-	Ins	intronic	I	42094047	42094057	1	64	748.416	-	-	9	1	1	MAPKBP1|CCDS32201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAPKBP1|CCDS32201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	11	13	0	0	./.	7	7	9	9	20	23	20	23	9	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754154127	15	99172022	C	CA	629	PASS	-	-	-	-	-	Ins	-	I	99172022	99172030	1	42	590.88	-	-	7	1	1	-	-	./.	0	0	0	0	9	23	9	23	0	0	./.	5	6	5	7	23	22	23	22	5	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754156889	16	6068997	AG	A	300	PASS	-	-	-	-	-	Del	-	D	6068997	6069003	1	6	270.855	-	-	5	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	0	5	0	6	8	13	8	13	0	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754159828	16	13830756	AT	A	780	PASS	-	-	-	-	-	Del	-	D	13830756	13830762	1	54	705.789	-	-	5	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	8	6	10	12	22	12	22	6	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754162688	16	23868315	C	CT	749	PASS	PRKCB	CCDS10619.1	r.?	-	-	Ins	intronic	I	23868315	23868325	1	56	693.146	-	-	9	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	7	6	8	8	19	18	19	18	8	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754164887	16	31292500	CT	C	342	PASS	ITGAM	CCDS45470.1	r.?	-	-	Del	intronic	D	31292500	31292509	1	30	488.623	-	-	8	1	1	ITGAM|CCDS45470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGAM|CCDS45470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	5	4	6	9	13	21	14	21	7	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754172086	16	62401363	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	62401363	62401371	1	20	374.622	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	3	6	5	9	8	10	8	6	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754179949	17	7871854	TG	T	660	PASS	-	-	-	-	-	Del	-	D	7871854	7871858	1	30	596.074	-	-	3	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	2	9	5	10	8	12	8	12	5	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754185360	17	30340352	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	30340352	30340361	1	24	429.568	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	5	4	8	17	22	17	22	4	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754203206	18	3230791	C	CT	900	PASS	AP005329.1	ENST00000513478	r.?	-	-	Ins	intronic	I	3230791	3230795	1	66	802.082	-	-	3	1	1	AP005329.1|ENST00000513478|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AP005329.1|ENST00000513478|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	10	6	11	15	25	15	25	6	11	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754208816	18	23844803	CTCTAT	C	627	PASS	TAF4B	CCDS42421.1	r.?	-	-	Del	intronic	D	23844803	23844816	5	45	651.178	-	-	2	1	1	TAF4B|CCDS42421.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAF4B|CCDS42421.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	8	4	8	5	18	14	18	14	8	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754210372	18	29543660	GCTGGCCCTTTTTTTTTTTGAGACGGAGTCTCACT	G	290	PASS	-	-	-	-	-	Del	-	D	29543660	29543698	34	35	543.15	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	6	3	4	11	12	11	14	4	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754211120	18	32397591	T	TAAGC	269	PASS	DTNA	CCDS45848.1	r.?	-	-	Ins	intronic	I	32397591	32397596	4	12	259.534	-	-	1	1	1	DTNA|CCDS45848.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DTNA|CCDS45848.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	3	3	20	21	22	22	3	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754214452	18	45124699	CCA	C	360	PASS	-	-	-	-	-	Del	-	D	45124699	45124711	2	15	325.89	-	-	5	1	1	-	-	./.	0	0	0	0	18	7	19	7	0	0	./.	4	2	5	3	16	9	17	10	5	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754223908	18	75640982	TC	T	749	PASS	-	-	-	-	-	Del	-	D	75640982	75640989	1	56	705.493	-	-	6	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	6	9	9	24	17	24	17	9	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754234227	19	28589672	AAAG	A	720	PASS	-	-	-	-	-	Del	-	D	28589672	28589689	3	45	652.164	-	-	5	1	1	-	-	./.	0	0	0	0	7	27	7	27	0	0	./.	4	8	4	9	21	19	21	19	4	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754238326	19	41493977	CG	C	480	PASS	CYP2B6	CCDS12570.1	r.?	-	-	Del	upstream	D	41493977	41493979	1	24	433.572	-	-	1	1	1	CYP2B6|CCDS12570.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CYP2B6|CCDS12570.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	12	13	12	0	0	./.	5	3	7	4	15	7	15	7	7	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754248013	2	12233295	T	TC	600	PASS	-	-	-	-	-	Ins	-	I	12233295	12233303	1	36	530.432	-	-	7	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	5	5	7	7	27	27	27	27	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754250587	2	22096575	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	22096575	22096583	1	10	265.818	-	-	7	1	1	-	-	./.	0	0	0	0	20	15	21	15	0	0	./.	4	1	6	1	18	10	20	10	6	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754266763	2	79535005	G	GT	420	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	79535005	79535014	1	20	372.988	-	-	8	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	3	4	5	8	15	21	15	21	5	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754270610	2	95776963	CTAAT	C	1287	PASS	MRPS5	CCDS2010.1	r.?	-	-	Del	intronic	D	95776963	95776969	4	156	1239.38	-	-	1	1	1	MRPS5|CCDS2010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPS5|CCDS2010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	11	12	12	12	19	13	19	13	12	12	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754271214	2	99070639	AAG	A	300	PASS	INPP4A	CCDS46369.1	r.?	-	-	Del	intronic	D	99070639	99070656	2	12	269.431	-	-	8	1	1	INPP4A|CCDS46369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	INPP4A|CCDS46369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	3	2	3	2	15	17	15	17	3	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754272773	2	105987083	A	AT	1380	PASS	FHL2	CCDS2070.1	r.?	-	-	Ins	intronic	I	105987083	105987086	1	154	1225.53	-	-	2	1	1	FHL2|CCDS2070.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FHL2|CCDS2070.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	13	10	15	15	15	23	15	23	15	15	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754274540	2	113630932	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	113630932	113630941	1	40	581.308	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	11	13	0	0	./.	7	4	11	7	31	22	31	22	11	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754274713	2	114341125	TTGCGTCTGGC	T	437	PASS	MIR1302-3	ENST00000408128	r.?	-	-	Del	upstream	D	114341125	114341137	10	32	862.178	-	-	1	1	1	MIR1302-3|ENST00000408128|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR1302-3|ENST00000408128|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	25	26	25	26	0	0	./.	15	1	15	0	41	22	41	23	15	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754277613	2	127308849	GAACAC	G	629	PASS	-	-	-	-	-	Del	-	D	127308849	127308857	5	36	592.747	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	8	6	8	15	23	15	23	6	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754285694	2	158953891	C	CTA	360	PASS	UPP2	CCDS2207.1	r.?	-	-	Ins	upstream	I	158953891	158953908	2	15	316.092	-	-	8	1	1	UPP2|CCDS2207.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	UPP2|CCDS46435.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	2	8	4	17	12	17	13	8	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754286316	2	161089757	CTT	C	480	PASS	-	-	-	-	-	Del	-	D	161089757	161089761	2	24	431.089	-	-	3	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	3	5	5	5	25	14	25	14	5	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754295265	2	197734464	CT	C	300	PASS	PGAP1	CCDS2318.1	r.?	-	-	Del	intronic	D	197734464	197734467	1	10	269.431	-	-	2	1	1	PGAP1|CCDS2318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGAP1|CCDS2318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	1	4	2	7	10	24	10	24	2	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754312929	20	29610647	CTG	C	345	PASS	FRG1B	ENST00000278882	r.?	-	-	Del	upstream	D	29610647	29610650	2	21	1088.74	-	-	1	1	1	FRG1B|ENST00000278882|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	FRG1B|ENST00000278882|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	113	104	113	104	0	0	./.	20	0	23	0	214	164	214	164	23	0	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754321616	20	59115126	C	CT	540	PASS	ENSG00000237240	ENST00000456299	r.?	-	-	Ins	intronic	I	59115126	59115134	1	28	483.912	-	-	7	1	1	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	9	7	0	0	./.	3	6	7	7	18	21	18	22	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754323898	21	10009991	TC	T	329	PASS	-	-	-	-	-	Del	-	D	10009991	10009993	1	27	544.68	-	-	1	1	1	-	-	./.	0	0	0	0	81	55	81	55	0	0	./.	8	2	11	4	193	62	193	62	11	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754330321	21	27218432	TTGA	T	687	PASS	AP001441.1	ENST00000509807	r.?	-	-	Del	intronic	D	27218432	27218440	3	56	706.88	-	-	2	1	1	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	6	7	8	9	17	21	17	21	8	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754332282	21	32865986	TA	T	480	PASS	TIAM1	CCDS13609.1	r.?	-	-	Del	intronic	D	32865986	32865988	1	21	435.744	-	-	1	1	1	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	2	6	6	9	14	17	14	17	6	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754337703	22	17164946	ATTAAT	A	420	PASS	-	-	-	-	-	Del	-	D	17164946	17164956	5	20	382.641	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	3	4	4	5	14	25	14	25	4	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754341526	22	29192323	CATT	C	420	PASS	XBP1	CCDS13847.1	r.?	-	-	Del	intronic	D	29192323	29192336	3	20	382.641	-	-	4	1	1	XBP1|CCDS13847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XBP1|CCDS13847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	6	8	21	19	21	19	6	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754341909	22	30437137	G	GA	300	PASS	AC003681.2	ENST00000504478	r.?	-	-	Ins	intronic	I	30437137	30437140	1	12	270.305	-	-	2	1	1	AC003681.2|ENST00000504478|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC003681.2|ENST00000504478|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	4	4	15	19	15	19	4	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754343522	22	34996060	TAGG	T	1227	PASS	-	-	-	-	-	Del	-	D	34996060	34996066	3	144	1202.59	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	11	11	14	11	27	28	27	28	14	11	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754347077	22	46227264	AT	A	300	PASS	ATXN10	CCDS14070.1	r.?	-	-	Del	intronic	D	46227264	46227269	1	12	272.713	-	-	4	1	1	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	3	2	3	2	17	15	17	15	3	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754347942	22	49188151	TG	T	300	PASS	FAM19A5	ENST00000336769	r.?	-	-	Del	intronic	D	49188151	49188153	1	12	273.315	-	-	1	1	-	FAM19A5|ENST00000336769|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM19A5|ENST00000336769|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	2	3	5	6	18	12	18	12	5	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754348404	22	50732771	C	CA	420	PASS	PLXNB2	CCDS43035.1	r.?	-	-	Ins	intronic	I	50732771	50732774	1	20	378.426	-	-	2	1	1	PLXNB2|CCDS43035.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PLXNB2|CCDS43035.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	4	3	5	5	18	12	18	14	5	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754352470	3	11983663	G	GA	596	PASS	-	-	-	-	-	Ins	-	I	11983663	11983669	1	40	586.951	-	-	5	1	1	-	-	./.	0	0	0	0	21	4	21	4	0	0	./.	4	7	5	8	18	23	18	23	5	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754354283	3	19426666	T	TA	480	PASS	KCNH8	CCDS2632.1	r.?	-	-	Ins	intronic	I	19426666	19426670	1	21	426.874	-	-	3	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	2	6	5	7	16	23	16	23	5	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754358301	3	34218232	GACAA	G	358	PASS	-	-	-	-	-	Del	-	D	34218232	34218240	4	20	377.729	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	4	4	18	21	18	21	4	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754360469	3	43359189	CAGG	CT	596	PASS	SNRK	CCDS43075.1	r.?	-	-	Complex	intronic	DI	43359190	43359192	3	40	0	-	-	0	1	1	SNRK|CCDS43075.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	SNRK|CCDS43075.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	9	3	0	0	22	11	22	11	9	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754374645	3	94990965	AT	A	540	PASS	-	-	-	-	-	Del	-	D	94990965	94990975	1	30	485.651	-	-	9	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	5	4	8	7	17	22	17	22	8	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754375147	3	96729486	T	TA	300	PASS	EPHA6	CCDS46876.1	r.?	-	-	Ins	intronic	I	96729486	96729494	1	10	266.796	-	-	7	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	8	5	8	0	0	./.	1	4	4	7	13	19	13	19	4	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754377207	3	103780526	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	103780526	103780529	1	36	533.592	-	-	2	1	1	-	-	./.	0	0	0	0	10	10	11	10	0	0	./.	5	5	6	6	21	25	22	25	6	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754378671	3	108790883	CA	C	480	PASS	MORC1	CCDS2955.1	r.?	-	-	Del	intronic	D	108790883	108790889	1	25	431.69	-	-	5	1	1	MORC1|CCDS2955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MORC1|CCDS2955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	4	4	5	6	18	17	18	17	5	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754380071	3	113433888	TTTG	T	360	PASS	NAA50	CCDS2975.1	r.?	-	-	Del	downstream	D	113433888	113433903	3	16	323.768	-	-	4	1	1	NAA50|CCDS2975.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NAA50|CCDS2975.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	4	5	17	20	17	20	4	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754387660	3	142571280	AATAAT	A	296	PASS	PCOLCE2	CCDS3127.1	r.?	-	-	Del	intronic	D	142571280	142571290	5	14	369.3	-	-	1	1	1	PCOLCE2|CCDS3127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCOLCE2|CCDS3127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	1	6	1	8	4	26	4	26	1	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754388535	3	145526439	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	145526439	145526447	1	16	318.951	-	-	7	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	3	3	5	4	22	12	22	12	5	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754402669	3	194728429	ACAGCGAGGTCCT	A	319	PASS	-	-	-	-	-	Del	-	D	194728429	194728444	12	40	593.574	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	7	4	8	19	25	19	25	4	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754409281	4	19348856	AT	A	840	PASS	-	-	-	-	-	Del	-	D	19348856	19348858	1	60	754.902	-	-	1	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	9	5	10	8	24	13	24	13	10	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754413118	4	32087957	CA	C	420	PASS	-	-	-	-	-	Del	-	D	32087957	32087963	1	20	376.849	-	-	5	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	4	4	4	11	12	11	12	4	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754413244	4	32460342	GAAAC	G	389	PASS	-	-	-	-	-	Del	-	D	32460342	32460354	4	20	364.206	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	3	5	4	15	19	15	19	5	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754415834	4	40696216	GA	G	660	PASS	-	-	-	-	-	Del	-	D	40696216	40696218	1	40	592.535	-	-	1	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	7	6	9	21	18	21	18	6	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754418388	4	49193631	AAGTT	A	293	PASS	-	-	-	-	-	Del	-	D	49193631	49193636	4	10	485.294	-	-	1	1	1	-	-	./.	0	0	0	0	31	17	31	17	0	0	./.	9	0	10	0	32	31	32	31	10	0	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754423619	4	68273563	CT	C	577	PASS	-	-	-	-	-	Del	-	D	68273563	68273570	1	32	539.216	-	-	6	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	3	7	7	9	20	20	20	20	7	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754427801	4	82637326	GA	G	420	PASS	-	-	-	-	-	Del	-	D	82637326	82637329	1	20	377.451	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	3	4	4	19	22	19	22	4	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754442801	4	137669154	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	137669154	137669161	1	20	373.237	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	13	8	0	0	./.	3	4	6	4	14	15	14	15	6	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754445637	4	148293772	ATTAT	A	509	PASS	-	-	-	-	-	Del	-	D	148293772	148293785	4	18	485.294	-	-	3	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	8	4	11	10	26	10	26	4	11	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754448988	4	158860029	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	158860029	158860048	2	12	267.802	-	-	9	1	-	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	3	3	29	25	29	25	3	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754455454	4	177232973	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	177232973	177232975	1	10	266.598	-	-	1	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	1	4	12	13	29	29	29	29	12	13	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754455635	4	177646863	C	CA	1140	PASS	VEGFC	ENST00000280193	r.?	-	-	Ins	intronic	I	177646863	177646869	1	98	1013.07	-	-	5	1	1	VEGFC|ENST00000280193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VEGFC|ENST00000280193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	13	8	0	0	./.	13	6	18	9	28	18	28	19	18	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754459445	4	186952649	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	186952649	186952665	2	12	268.404	-	-	7	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	3	2	36	25	36	25	3	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754472060	5	31494792	CA	C	360	PASS	RNASEN	CCDS47195.1	r.?	-	-	Del	intronic	D	31494792	31494802	1	15	324.042	-	-	9	1	1	RNASEN|CCDS47195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNASEN|CCDS47195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	4	2	6	2	23	17	23	17	6	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754486450	5	85850545	C	CTA	300	PASS	-	-	-	-	-	Ins	-	I	85850545	85850558	2	12	264.014	-	-	6	1	-	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	2	3	2	6	15	9	15	9	2	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754489895	5	100898618	GA	G	480	PASS	-	-	-	-	-	Del	-	D	100898618	100898622	1	16	432.056	-	-	3	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	7	1	10	5	23	11	23	11	10	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754494334	5	117715168	AT	A	420	PASS	-	-	-	-	-	Del	-	D	117715168	117715171	1	20	375.039	-	-	2	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	3	4	6	12	17	12	17	4	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754500364	5	141153668	TA	T	300	PASS	-	-	-	-	-	Del	-	D	141153668	141153670	1	6	270.035	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	0	9	2	20	11	20	11	9	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754504867	5	157781890	TG	T	360	PASS	-	-	-	-	-	Del	-	D	157781890	157781892	1	12	315.613	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	1	5	7	10	12	21	12	21	7	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754505037	5	158515092	GT	G	300	PASS	EBF1	CCDS4343.1	r.?	-	-	Del	intronic	D	158515092	158515095	1	12	270.035	-	-	2	1	1	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	2	3	7	5	17	17	17	17	7	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754507901	5	167928394	CT	C	660	PASS	RARS	CCDS4367.1	r.?	-	-	Del	intronic	D	167928394	167928403	1	36	594.077	-	-	8	1	1	RARS|CCDS4367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARS|CCDS4367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	8	3	12	4	28	27	28	27	12	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754510409	5	175581330	TG	T	420	PASS	-	-	-	-	-	Del	-	D	175581330	175581336	1	20	378.049	-	-	5	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	3	4	5	5	28	20	28	20	5	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754513125	6	1812024	ATTCTTTGAGTAAG	A	290	PASS	GMDS	CCDS4474.1	r.?	-	-	Del	intronic	D	1812024	1812040	13	32	540.117	-	-	1	1	1	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	7	3	8	12	14	12	14	3	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754513540	6	2999958	TGGGCGCGGAC	T	290	PASS	NQO2	CCDS4481.1	r.?	-	-	Del	upstream	D	2999958	2999978	10	20	534.698	-	-	1	1	-	NQO2|CCDS4481.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NQO2|ENST00000380472|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	1	9	1	10	7	16	7	16	1	11	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754522852	6	30151446	T	TA	360	PASS	TRIM26	CCDS4678.1	r.?	-	-	Ins	downstream	I	30151446	30151453	1	16	319.253	-	-	6	1	1	TRIM26|CCDS4678.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TRIM26|CCDS4678.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	6	4	16	9	17	10	6	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754529741	6	50790704	GTAGTTA	G	464	PASS	TFAP2B	CCDS4934.2	r.?	-	-	Del	intronic	D	50790704	50790711	6	81	864.187	-	-	1	1	1	TFAP2B|CCDS4934.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TFAP2B|CCDS4934.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	8	8	10	9	21	23	21	23	10	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754537548	6	78091486	AATAT	A	540	PASS	-	-	-	-	-	Del	-	D	78091486	78091494	4	24	486.105	-	-	3	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	7	2	7	3	21	13	21	13	7	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754540727	6	90560838	ACT	A	540	PASS	CASP8AP2	ENST00000455594	r.?	-	-	Del	intronic	D	90560838	90560843	2	28	486.105	-	-	2	1	1	CASP8AP2|ENST00000455594|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASP8AP2|ENST00000455594|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	3	6	6	7	13	12	13	12	6	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754545968	6	110086885	TA	T	480	PASS	FIG4	CCDS5078.1	r.?	-	-	Del	intronic	D	110086885	110086892	1	24	432.093	-	-	6	1	1	FIG4|CCDS5078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FIG4|CCDS5078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	6	5	6	0	0	./.	5	3	6	5	22	17	22	17	6	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754552320	6	134711449	CAATT	C	718	PASS	-	-	-	-	-	Del	-	D	134711449	134711456	4	50	700.948	-	-	1	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	9	4	11	5	22	18	22	18	11	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754553318	6	138473541	GT	G	540	PASS	-	-	-	-	-	Del	-	D	138473541	138473546	1	30	486.105	-	-	4	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	5	6	8	15	19	15	19	6	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754556308	6	151185391	T	TA	660	PASS	MTHFD1L	CCDS5228.1	r.?	-	-	Ins	upstream	I	151185391	151185398	1	40	587.506	-	-	6	1	1	MTHFD1L|CCDS5228.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	MTHFD1L|CCDS5228.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	14	12	14	12	0	0	./.	7	4	12	6	29	18	29	18	12	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754562187	6	170892632	C	CTA	840	PASS	PDCD2	CCDS5316.1	r.515_516insua	c.486_487insTA	p.D163fs*1	Ins	frameshift	I	170892632	170892635	2	63	739.306	-	-	1	1	1	PDCD2|CCDS5316.1|r.515_516insua|c.486_487insTA|p.D163fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	PDCD2|CCDS5316.1|r.515_516insua|c.486_487insTA|p.D163fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	10	5	10	5	0	0	./.	6	8	6	8	15	18	15	18	6	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754573915	7	38614300	CTTCTA	C	327	PASS	AMPH	CCDS5456.1	r.?	-	-	Del	intronic	D	38614300	38614313	5	14	378.201	-	-	2	1	1	AMPH|CCDS5456.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AMPH|CCDS5456.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	24	7	24	0	0	./.	1	6	2	7	15	24	15	24	2	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754584346	7	72211944	AG	A	629	PASS	-	-	-	-	-	Del	-	D	72211944	72211947	1	40	593.714	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	7	9	8	21	22	21	22	9	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754585648	7	76793761	CAT	C	277	PASS	CCDC146	CCDS34671.1	r.?	-	-	Del	intronic	D	76793761	76793764	2	10	270.144	-	-	1	1	1	CCDC146|CCDS34671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC146|CCDS34671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	5	2	15	8	15	8	5	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754590587	7	95067947	TTGG	T	509	PASS	PON2	CCDS5640.1	r.?	-	-	Del	upstream	D	95067947	95067952	3	18	486.258	-	-	1	1	1	PON2|CCDS5640.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PON2|CCDS5640.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	15	11	15	0	0	./.	1	8	4	10	16	23	16	23	4	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754590611	7	95159224	CACTCATTTGTTTATTTAACAAATAT	C	261	PASS	ASB4	CCDS5641.1	r.?	-	-	Del	intronic	D	95159224	95159250	25	30	486.258	-	-	1	1	1	ASB4|CCDS5641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB4|CCDS5641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	5	4	4	4	12	14	13	14	5	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754596917	7	118896827	TA	T	720	PASS	-	-	-	-	-	Del	-	D	118896827	118896831	1	48	648.345	-	-	3	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	7	5	7	7	18	19	18	19	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754597884	7	123109213	A	AT	300	PASS	IQUB	CCDS5787.1	r.?	-	-	Ins	intronic	I	123109213	123109223	1	12	267.133	-	-	9	1	1	IQUB|CCDS5787.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IQUB|CCDS5787.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	14	12	0	0	./.	2	3	3	3	24	18	24	18	3	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754604584	7	145173058	AT	A	360	PASS	-	-	-	-	-	Del	-	D	145173058	145173064	1	15	324.172	-	-	5	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	2	4	3	8	9	8	9	4	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754610727	8	4735459	AC	A	360	PASS	-	-	-	-	-	Del	-	D	4735459	4735463	1	12	324.337	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	5	2	10	11	18	11	18	2	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754612412	8	9934429	G	GA	540	PASS	MSRA	CCDS5975.1	r.?	-	-	Ins	intronic	I	9934429	9934439	1	30	479.883	-	-	9	1	1	MSRA|CCDS5975.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSRA|CCDS5975.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	4	7	4	15	13	15	13	7	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754613726	8	13990481	GAGA	G	509	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	13990481	13990488	3	24	486.506	-	-	2	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	2	7	3	7	17	30	17	30	3	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754622521	8	47485649	CA	C	674	PASS	-	-	-	-	-	Del	-	D	47485649	47485654	1	40	646.266	-	-	4	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	3	9	4	10	17	19	17	19	4	10	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754625782	8	59250417	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	59250417	59250427	1	10	267.271	-	-	9	1	1	-	-	./.	0	0	0	0	20	20	21	20	0	0	./.	1	4	1	4	32	30	33	30	1	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754626640	8	62055330	CACCTTCTGTAATGCCAGGAG	C	493	PASS	-	-	-	-	-	Del	-	D	62055330	62055351	20	88	916.548	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	10	7	10	7	26	21	26	21	10	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754630697	8	75758810	AAT	A	720	PASS	PI15	CCDS6218.1	r.?	-	-	Del	intronic	D	75758810	75758815	2	49	648.675	-	-	2	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	23	10	23	0	0	./.	6	6	13	14	22	26	22	26	13	14	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754633537	8	85013214	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	85013214	85013230	2	12	269.679	-	-	7	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	3	22	33	22	33	3	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754634915	8	89667774	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	89667774	89667777	2	10	269.077	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	3	5	14	18	14	18	3	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754637039	8	96973300	ACACAATACTTTTCAAACTATGATGTTGGCT	A	261	PASS	-	-	-	-	-	Del	-	D	96973300	96973331	30	30	486.506	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	4	4	4	24	22	26	22	6	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754637965	8	100122907	G	GT	360	PASS	VPS13B	CCDS6280.1	r.?	-	-	Ins	intronic	I	100122907	100122916	1	15	320.725	-	-	8	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	4	2	6	3	24	16	24	17	6	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754639081	8	103841463	CAAATATCCCATCTGCCTTA	C	348	PASS	AZIN1	CCDS6295.1	r.?	-	-	Del	intronic	D	103841463	103841488	19	49	648.675	-	-	1	1	1	AZIN1|CCDS6295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AZIN1|CCDS6295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	6	6	6	6	25	29	25	29	6	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754643126	8	118120281	TTATCAA	T	307	PASS	SLC30A8	CCDS6322.1	r.?	-	-	Del	intronic	D	118120281	118120293	6	42	594.618	-	-	1	1	1	SLC30A8|CCDS6322.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC30A8|CCDS6322.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	6	5	10	5	33	24	33	24	10	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754644133	8	120941801	TATG	T	300	PASS	DEPDC6	CCDS6331.1	r.?	-	-	Del	intronic	D	120941801	120941830	3	10	270.281	-	-	9	1	-	DEPDC6|CCDS6331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DEPDC6|CCDS6331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	4	1	4	1	21	16	21	16	4	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754647118	8	130635176	A	AT	660	PASS	AC013300.1	ENST00000446592	r.?	-	-	Ins	intronic	I	130635176	130635178	1	42	587.996	-	-	1	1	1	AC013300.1|ENST00000446592|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC013300.1|ENST00000446592|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	5	6	7	7	22	18	22	18	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754652536	9	2384415	C	CT	389	PASS	-	-	-	-	-	Ins	-	I	2384415	2384425	1	20	375.015	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	3	5	5	17	15	17	15	5	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754654244	9	8399834	GA	G	840	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8399834	8399836	1	63	757.856	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	6	8	8	9	17	21	17	21	8	9	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754659936	9	28513177	C	CA	300	PASS	LINGO2	CCDS6524.1	r.?	-	-	Ins	intronic	I	28513177	28513185	1	12	267.868	-	-	7	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	16	7	0	0	./.	3	2	4	2	23	15	23	15	4	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754677323	9	112125411	CT	C	420	PASS	-	-	-	-	-	Del	-	D	112125411	112125413	1	20	375.015	-	-	1	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	3	4	4	5	11	21	11	21	4	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754677661	9	113219981	T	TA	480	PASS	SVEP1	CCDS48004.1	r.?	-	-	Ins	intronic	I	113219981	113219987	1	25	428.588	-	-	5	1	1	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	4	4	5	15	16	15	17	4	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754679086	9	117707201	TGAAAA	T	534	PASS	-	-	-	-	-	Del	-	D	117707201	117707208	5	48	648.301	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	7	5	8	5	18	25	18	25	8	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754682070	9	128025802	CTGTTGTTTTTTTTTTTTTGGTTGTAAGTTTATTCAATGCAAAAGAAT	C	348	PASS	GAPVD1	CCDS35138.1	r.?	-	-	Del	intronic	D	128025802	128025850	47	45	649.505	-	-	1	1	1	GAPVD1|CCDS35138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GAPVD1|CCDS35138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	8	4	2	1	20	9	26	12	8	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754684674	9	136325835	TG	T	480	PASS	ADAMTS13	CCDS6970.1	r.?	-	-	Del	downstream	D	136325835	136325839	1	16	426.18	-	-	3	1	1	ADAMTS13|CCDS6970.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C9orf7|CCDS6974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	1	11	1	21	8	21	8	11	1	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754685825	9	140899239	C	CA	300	PASS	CACNA1B	ENST00000371372	r.?	-	-	Ins	intronic	I	140899239	140899248	1	6	267.868	-	-	8	1	1	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	9	10	0	0	./.	5	0	7	2	27	9	29	9	7	2	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754690554	X	24392259	CT	C	480	PASS	-	-	-	-	-	Del	-	D	24392259	24392261	1	21	432.382	-	-	1	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	2	6	2	6	18	17	18	17	2	6	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754690788	X	25674151	AT	A	600	PASS	-	-	-	-	-	Del	-	D	25674151	25674158	1	35	541.983	-	-	6	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	6	4	11	7	21	20	21	20	11	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754690953	X	26806874	CT	C	600	PASS	-	-	-	-	-	Del	-	D	26806874	26806881	1	35	541.983	-	-	6	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	6	4	7	7	19	18	19	18	7	7	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754695348	X	47820699	G	GT	420	PASS	ZNF81	ENST00000376950	r.?	-	-	Ins	intronic	I	47820699	47820709	1	20	375.174	-	-	9	1	1	ZNF81|ENST00000376950|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF81|ENST00000376950|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	4	5	15	14	15	14	4	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754698779	X	71189113	CT	C	600	PASS	-	-	-	-	-	Del	-	D	71189113	71189123	1	36	541.983	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	5	5	6	13	19	26	19	26	6	13	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754701162	X	83009283	AG	A	283	PASS	-	-	-	-	-	Del	-	D	83009283	83009285	1	32	541.983	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	7	3	6	4	16	10	18	10	8	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754702689	X	88976051	GT	G	535	PASS	-	-	-	-	-	Del	-	D	88976051	88976059	1	64	758.777	-	-	7	1	-	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	7	7	7	8	21	15	21	15	7	8	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754703648	X	93742707	C	CAA	600	PASS	-	-	-	-	-	Ins	-	I	93742707	93742710	2	35	529.942	-	-	2	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	6	4	7	4	14	10	14	10	7	4	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754704370	X	97430524	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	97430524	97430541	2	6	270.992	-	-	8	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	5	0	4	0	24	18	24	18	5	0	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754707270	X	114117274	AT	A	420	PASS	HTR2C	CCDS14564.1	r.?	-	-	Del	intronic	D	114117274	114117276	1	18	379.388	-	-	1	1	1	HTR2C|CCDS14564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTR2C|CCDS14564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	3	5	12	13	12	13	3	5	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754712060	X	136914437	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	136914437	136914451	2	12	266.175	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	3	3	3	22	22	22	22	3	3	1	1	1	1	1	1	1	1
2772522	PD7314a	PD7314b	2754714012	X	145925751	TC	T	840	PASS	-	-	-	-	-	Del	-	D	145925751	145925754	1	64	758.174	-	-	2	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	7	7	8	8	21	21	21	21	8	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757886439	1	82294267	AT	A	509	PASS	LPHN2	CCDS689.1	r.?	-	-	Del	intronic	D	82294267	82294273	1	28	480.242	-	-	5	1	1	LPHN2|CCDS689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN2|CCDS689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	6	3	8	17	29	17	29	3	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757893569	1	105230949	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	105230949	105230951	1	24	425.276	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	12	9	0	0	./.	5	3	8	6	30	25	34	25	8	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757899632	1	143275379	A	AT	250	PASS	-	-	-	-	-	Ins	-	I	143275379	143275380	1	11	531.595	-	-	0	1	1	-	-	./.	0	0	0	0	65	57	65	57	0	0	./.	0	10	0	13	99	93	99	93	0	13	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757904968	1	157032506	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	157032506	157032514	1	15	318.957	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	2	12	3	36	19	37	19	12	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757907329	1	164632546	CCT	C	360	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164632546	164632565	2	12	321.967	-	-	9	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	1	6	1	26	17	26	17	6	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757908849	1	169081104	C	CT	720	PASS	ATP1B1	CCDS1276.1	r.?	-	-	Ins	intronic	I	169081104	169081106	1	48	636.108	-	-	1	1	1	ATP1B1|CCDS1276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP1B1|CCDS1276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	7	5	10	5	24	17	24	17	10	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757916086	1	192411688	A	AAT	360	PASS	-	-	-	-	-	Ins	-	I	192411688	192411701	2	16	315.345	-	-	6	1	1	-	-	./.	0	0	0	0	11	21	11	22	0	0	./.	3	3	5	4	16	23	17	23	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757916925	1	194741106	TTTC	T	480	PASS	-	-	-	-	-	Del	-	D	194741106	194741120	3	24	429.491	-	-	4	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	5	3	7	5	27	23	27	23	7	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757921293	1	207927469	CAAAT	C	480	PASS	CD46	CCDS1485.1	r.?	-	-	Del	intronic	D	207927469	207927478	4	21	430.093	-	-	2	1	1	CD46|CCDS1485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD46|CCDS1485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	2	8	3	21	28	21	28	8	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757928001	1	227924643	ATGGAGT	A	319	PASS	JMJD4	CCDS1561.1	r.?	-	-	Del	upstream	D	227924643	227924651	6	36	591.378	-	-	1	1	1	JMJD4|CCDS1561.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SNAP47|CCDS1562.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	8	3	8	3	20	31	20	31	8	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757929012	1	231201246	AG	A	269	PASS	-	-	-	-	-	Del	-	D	231201246	231201248	1	6	260.379	-	-	1	1	-	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	5	0	6	0	22	25	22	25	6	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757929268	1	231865740	T	TA	420	PASS	DISC1	CCDS31055.1	r.?	-	-	Ins	intronic	I	231865740	231865748	1	18	372.117	-	-	7	1	1	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	5	3	6	24	30	24	30	3	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757942205	10	16064716	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	16064716	16064720	2	20	377.672	-	-	3	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	3	7	6	22	20	22	20	7	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757944479	10	23747920	AAAC	A	507	PASS	-	-	-	-	-	Del	-	D	23747920	23747926	3	35	539.531	-	-	1	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	4	6	7	6	22	18	22	18	7	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757945315	10	26211007	GT	G	540	PASS	-	-	-	-	-	Del	-	D	26211007	26211016	1	30	485.578	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	5	5	6	21	19	21	19	5	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757949482	10	37718955	ATGTT	A	480	PASS	-	-	-	-	-	Del	-	D	37718955	37718965	4	24	431.625	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	3	7	3	25	23	25	23	7	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757952033	10	45203735	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	45203735	45203745	1	12	266.755	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	2	3	21	29	22	29	2	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757953762	10	53740189	GTGGTGATGAGAAGAATGTATAGTCTGTTATTT	G	290	PASS	PRKG1	CCDS7244.1	r.?	-	-	Del	intronic	D	53740189	53740225	32	32	539.531	-	-	1	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	7	3	6	2	21	13	22	14	7	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757957330	10	64263395	GCCAGCTCTCTTCTCATCAA	G	290	PASS	ZNF365	CCDS7264.1	r.?	-	-	Del	intronic	D	64263395	64263419	19	32	539.531	-	-	1	1	1	ZNF365|CCDS7264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF365|CCDS7264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	7	3	7	20	22	20	22	3	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757984199	11	11469392	TG	T	540	PASS	GALNTL4	CCDS7807.1	r.?	-	-	Del	intronic	D	11469392	11469396	1	30	485.077	-	-	3	1	1	GALNTL4|CCDS7807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNTL4|CCDS7807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	4	5	4	6	16	17	16	17	4	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757985565	11	16022287	C	CGT	360	PASS	SOX6	CCDS7821.1	r.?	-	-	Ins	intronic	I	16022287	16022301	2	16	316.361	-	-	6	1	-	SOX6|CCDS7821.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SOX6|CCDS7821.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	3	3	4	12	23	12	26	3	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757986114	11	17836246	GT	G	360	PASS	SERGEF	CCDS7828.1	r.?	-	-	Del	intronic	D	17836246	17836248	1	15	324.188	-	-	1	1	1	SERGEF|CCDS7828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SERGEF|CCDS7828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	2	4	3	20	20	20	20	4	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757999738	11	63552575	GAACTTCAAGAACTGTGGGAAATTATGAAAGCTGTAACAACGTGTACTGAGAATAGCAGAAGGAGAAGAAAAAGAGAAAGTAACA	G	261	PASS	-	-	-	-	-	Del	-	D	63552575	63552662	84	24	486.281	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	7	0	0	18	19	20	26	2	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2757999976	11	64301414	GA	G	720	PASS	-	-	-	-	-	Del	-	D	64301414	64301421	1	49	647.773	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	6	8	8	31	23	31	23	8	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758000062	11	64635209	C	CA	420	PASS	EHD1	CCDS8084.1	r.?	-	-	Ins	intronic	I	64635209	64635218	1	18	374.004	-	-	8	1	1	EHD1|CCDS8084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EHD1|CCDS8084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	12	0	0	./.	2	5	7	7	14	32	17	32	7	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758002842	11	73289703	AAATACCC	A	319	PASS	FAM168A	CCDS41689.1	r.?	-	-	Del	intronic	D	73289703	73289713	7	40	593.14	-	-	1	1	1	FAM168A|CCDS41689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM168A|CCDS41689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	24	7	24	0	0	./.	4	7	4	8	14	33	14	33	4	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758006810	11	86721998	GA	G	420	PASS	-	-	-	-	-	Del	-	D	86721998	86722002	1	20	377.617	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	5	6	23	21	23	21	5	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758007456	11	88483030	AT	A	300	PASS	GRM5	CCDS44694.1	r.?	-	-	Del	intronic	D	88483030	88483040	1	10	270.156	-	-	9	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	1	4	1	5	18	31	18	31	1	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758011285	11	100995744	GAAAC	G	540	PASS	PGR	CCDS8310.1	r.?	-	-	Del	intronic	D	100995744	100995764	4	30	486.281	-	-	4	1	1	PGR|CCDS8310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGR|CCDS8310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	4	5	4	26	12	26	12	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758012911	11	105461504	CA	C	600	PASS	-	-	-	-	-	Del	-	D	105461504	105461509	1	36	540.313	-	-	4	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	5	4	8	19	20	19	20	5	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758030086	12	21402196	CACATT	C	474	PASS	-	-	-	-	-	Del	-	D	21402196	21402205	5	40	594.395	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	7	5	8	23	20	23	20	5	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758030700	12	23532992	AAAAATTCCTAAATCTGATAAATCCTGAATCAGTAAAGTTTCAGGATACAAAATAATGCATGAAAATTAGTTGCATTTCTATACATCAACAATGTTCAAGCTGAGAACTAAATCAAGTACTTATTCCCATTTACAATAGCCTAAAATATTAAAATACCTAGAAATATATTTAACTAGGGAGGTGAAAGACTTCTATAAGGAGAACTACAAAACACTGATGAAGCAAATTGTAGATGACATGAACAAACAGATAAGC	A	290	PASS	-	-	-	-	-	Del	-	D	23532992	23533249	255	35	540.359	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	4	0	0	19	11	25	15	6	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758045205	12	70529436	GA	G	480	PASS	-	-	-	-	-	Del	-	D	70529436	70529444	1	24	432.287	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	5	4	7	30	25	30	25	4	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758056239	12	107237805	AC	A	629	PASS	RIC8B	CCDS9109.2	r.?	-	-	Del	intronic	D	107237805	107237807	1	42	593.792	-	-	1	1	1	RIC8B|CCDS9109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIC8B|CCDS9109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	6	6	9	21	25	21	25	6	9	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758060067	12	118964692	GC	G	420	PASS	-	-	-	-	-	Del	-	D	118964692	118964695	1	20	378.251	-	-	2	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	3	6	5	23	20	23	20	6	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758069626	13	27664789	ATCT	A	567	PASS	USP12	CCDS31952.1	r.?	-	-	Del	intronic	D	27664789	27664797	3	36	595.827	-	-	2	1	1	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	8	5	9	22	24	22	24	5	9	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758074593	13	42366686	GT	G	360	PASS	KIAA0564	CCDS41881.1	r.?	-	-	Del	intronic	D	42366686	42366688	1	12	324.996	-	-	1	1	1	KIAA0564|CCDS41881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0564|CCDS41881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	1	5	1	8	11	26	11	26	1	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758089380	13	87960822	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	87960822	87960830	1	20	374.948	-	-	7	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	3	6	5	27	30	27	30	6	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758097582	13	113182188	GTC	G	540	PASS	TUBGCP3	CCDS9525.1	r.?	-	-	Del	intronic	D	113182188	113182196	2	18	487.494	-	-	3	1	1	TUBGCP3|CCDS9525.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TUBGCP3|CCDS9525.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	8	1	9	3	26	22	26	22	9	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758100905	14	27692672	AC	A	300	PASS	-	-	-	-	-	Del	-	D	27692672	27692674	1	12	271.089	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	4	3	25	26	25	26	4	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758113515	14	67730266	CTT	C	420	PASS	MPP5	CCDS9779.1	r.?	-	-	Del	intronic	D	67730266	67730269	2	18	379.525	-	-	2	1	1	MPP5|CCDS9779.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MPP5|CCDS9779.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	5	2	5	4	26	19	26	19	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758118674	14	83120305	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	83120305	83120308	1	49	642.186	-	-	2	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	6	7	6	24	16	24	17	7	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758127308	15	20571234	TA	T	480	PASS	-	-	-	-	-	Del	-	D	20571234	20571236	1	24	433.943	-	-	1	1	1	-	-	./.	0	0	0	0	39	31	39	31	0	0	./.	3	5	5	7	63	44	63	44	5	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758129513	15	27013948	AT	A	300	PASS	GABRB3	CCDS10019.1	r.?	-	-	Del	intronic	D	27013948	27013954	1	12	271.214	-	-	5	1	1	GABRB3|CCDS10019.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABRB3|CCDS10019.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	2	3	2	33	24	33	24	3	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758133313	15	38913241	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	38913241	38913257	2	12	270.01	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	3	2	27	22	27	22	3	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758136892	15	50544038	A	AG	300	PASS	HDC	CCDS10134.1	r.?	-	-	Ins	intronic	I	50544038	50544039	1	10	263.99	-	-	0	1	1	HDC|CCDS10134.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDC|CCDS10134.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	1	7	1	28	19	30	19	7	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758145006	15	73890774	T	TA	300	PASS	NPTN	CCDS10249.1	r.?	-	-	Ins	intronic	I	73890774	73890776	1	12	268.204	-	-	1	1	1	NPTN|CCDS10249.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPTN|CCDS10249.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	2	3	5	4	18	21	19	21	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758146873	15	79531829	AACCAGGCTGGAGTCTGGAGC	A	261	PASS	-	-	-	-	-	Del	-	D	79531829	79531855	20	30	486.982	-	-	1	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	5	2	4	16	21	18	22	4	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758151250	15	93541358	TA	T	480	PASS	CHD2	CCDS10374.2	r.?	-	-	Del	intronic	D	93541358	93541363	1	24	433.943	-	-	4	1	1	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	5	3	7	5	25	29	25	29	7	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758159808	16	12418289	G	GT	360	PASS	SNX29	CCDS45416.1	r.?	-	-	Ins	intronic	I	12418289	12418296	1	7	320.338	-	-	6	1	-	SNX29|CCDS45416.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNX29|CCDS45416.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	6	0	6	1	27	23	27	24	6	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758165705	16	27355626	G	GA	300	PASS	IL4R	CCDS10629.1	r.?	-	-	Ins	intronic	I	27355626	27355636	1	12	267.952	-	-	9	1	1	IL4R|CCDS10629.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL4R|CCDS10629.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	16	20	0	0	./.	3	2	3	2	28	37	28	37	3	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758168949	16	33883753	GATT	G	360	PASS	-	-	-	-	-	Del	-	D	33883753	33883761	3	16	325.155	-	-	2	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	3	3	6	4	33	29	33	29	6	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758171978	16	53957041	C	CA	420	PASS	FTO	CCDS32448.1	r.?	-	-	Ins	intronic	I	53957041	53957049	1	20	375.133	-	-	7	1	1	FTO|CCDS32448.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FTO|CCDS32448.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	4	6	12	25	12	25	4	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758191994	17	31120592	TCTTAAAATGATTTGGAAAAGGATGCTTTATTTTGATCTTTTGTTAACACACTGAAGCCTAGAATTAACAACTTGGAAGACAGCACTTAAGAACCACCACCACAGCCCATCAG	T	261	PASS	MYO1D	CCDS32615.1	r.?	-	-	Del	intronic	D	31120592	31120705	112	30	487.948	-	-	1	1	1	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	4	5	0	0	19	7	23	12	4	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758192180	17	31846977	GAGAGAAAACA	G	319	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	31846977	31846989	10	42	596.38	-	-	1	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	6	6	6	22	25	22	25	6	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758194076	17	38176113	CCACTG	C	420	PASS	MED24	CCDS11359.1	r.3267_3271delCAGUG	c.2773_2777delCAGTG	p.Q925fs*58	Del	frameshift	D	38176113	38176122	5	20	379.515	-	-	1	1	1	MED24|CCDS11359.1|r.3267_3271delCAGUG|c.2773_2777delCAGTG|p.Q925fs*58|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MED24|CCDS11359.1|r.3267_3271delCAGUG|c.2773_2777delCAGTG|p.Q925fs*58|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	16	11	16	0	0	./.	4	3	4	4	15	12	15	12	4	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758210434	18	2551699	T	TA	420	PASS	METTL4	CCDS11826.1	r.?	-	-	Ins	intronic	I	2551699	2551709	1	20	375.568	-	-	9	1	1	METTL4|CCDS11826.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	METTL4|CCDS11826.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	4	5	6	20	19	20	19	5	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758214919	18	19887379	AAAG	A	900	PASS	-	-	-	-	-	Del	-	D	19887379	19887390	3	70	812.616	-	-	3	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	9	6	9	7	22	29	22	29	9	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758222630	18	46881643	A	AT	660	PASS	DYM	CCDS11937.1	r.?	-	-	Ins	intronic	I	46881643	46881645	1	36	590.179	-	-	1	1	-	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	8	3	9	6	23	18	23	18	9	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758230801	18	70434950	T	TA	540	PASS	NETO1	CCDS12000.1	r.?	-	-	Ins	intronic	I	70434950	70434959	1	30	482.874	-	-	8	1	1	NETO1|CCDS12000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NETO1|CCDS12000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	17	20	17	0	0	./.	5	4	9	8	23	31	24	31	9	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758234474	19	3198517	A	AC	300	PASS	NCLN	CCDS32869.1	r.?	-	-	Ins	intronic	I	3198517	3198518	1	6	268.293	-	-	0	1	-	NCLN|CCDS32869.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCLN|CCDS32869.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	5	0	6	0	21	16	22	17	6	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758235635	19	6117656	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	6117656	6117666	1	12	321.951	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	1	5	3	7	13	28	13	28	3	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758256472	2	1166699	A	AT	780	PASS	SNTG2	CCDS46220.1	r.?	-	-	Ins	intronic	I	1166699	1166708	1	54	691.498	-	-	8	1	1	SNTG2|CCDS46220.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNTG2|CCDS46220.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	8	5	10	7	27	26	27	26	10	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758263807	2	25843897	T	TA	480	PASS	DTNB	CCDS46237.1	r.?	-	-	Ins	intronic	I	25843897	25843906	1	25	425.537	-	-	8	1	1	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	20	0	0	./.	4	4	6	5	24	19	24	19	6	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758265118	2	29800046	CAG	C	480	PASS	ALK	CCDS33172.1	r.?	-	-	Del	intronic	D	29800046	29800049	2	25	430.354	-	-	1	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	4	4	7	5	22	27	22	27	7	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758272956	2	54008799	AT	A	480	PASS	ASB3	CCDS1847.1	r.?	-	-	Del	intronic	D	54008799	54008804	1	24	430.354	-	-	4	1	1	ASB3|CCDS1847.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ASB3|CCDS1847.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	5	5	7	24	15	24	15	5	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758287118	2	104007504	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	104007504	104007506	1	20	371.743	-	-	1	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	6	6	22	18	22	19	6	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758288099	2	107300202	TA	T	480	PASS	-	-	-	-	-	Del	-	D	107300202	107300204	1	25	430.354	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	4	6	4	16	17	16	17	6	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758290124	2	114810695	GT	G	300	PASS	-	-	-	-	-	Del	-	D	114810695	114810697	1	6	248.501	-	-	1	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	5	0	7	0	23	16	23	16	7	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758297693	2	138617486	AAT	A	420	PASS	-	-	-	-	-	Del	-	D	138617486	138617491	2	20	376.56	-	-	2	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	4	3	6	6	19	21	19	21	6	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758302700	2	154902787	CT	C	300	PASS	GALNT13	CCDS2199.1	r.?	-	-	Del	intronic	D	154902787	154902789	1	12	268.971	-	-	1	1	1	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	3	2	3	19	22	19	22	2	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758304891	2	162270365	ACT	A	569	PASS	TBR1	CCDS33310.1	r.?	-	-	Del	upstream	D	162270365	162270370	2	32	535.534	-	-	2	1	1	TBR1|CCDS33310.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TBR1|CCDS33310.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	12	15	12	0	0	./.	7	3	8	4	20	22	20	22	8	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758304978	2	162562271	TTTG	T	658	PASS	SLC4A10	CCDS46438.1	r.?	-	-	Del	intronic	D	162562271	162562282	3	49	644.929	-	-	3	1	1	SLC4A10|CCDS46438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC4A10|CCDS46438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	6	6	7	9	28	34	28	34	7	9	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758306753	2	169697060	AAC	A	269	PASS	NOSTRIN	CCDS42771.1	r.?	-	-	Del	intronic	D	169697060	169697064	2	6	262.348	-	-	1	1	-	NOSTRIN|CCDS42771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOSTRIN|CCDS42771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	0	5	0	32	9	32	9	5	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758309888	2	178834612	GA	G	420	PASS	PDE11A	CCDS42786.1	r.?	-	-	Del	intronic	D	178834612	178834616	1	18	376.56	-	-	3	1	1	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	5	3	6	18	23	18	23	3	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758312367	2	187741930	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	187741930	187741939	1	24	425.537	-	-	8	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	5	3	6	4	28	27	28	27	6	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758337417	20	22163343	GTTTC	G	540	PASS	-	-	-	-	-	Del	-	D	22163343	22163355	4	28	488.731	-	-	2	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	3	6	4	9	24	28	24	28	4	9	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758339405	20	29485394	CTCTA	C	298	PASS	-	-	-	-	-	Del	-	D	29485394	29485404	4	7	325.82	-	-	2	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	0	8	0	23	18	23	18	8	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758344685	20	42540334	C	CA	300	PASS	TOX2	CCDS13324.1	r.?	-	-	Ins	upstream	I	42540334	42540344	1	10	267.905	-	-	9	1	1	TOX2|CCDS13324.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TOX2|CCDS13324.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	15	13	15	13	0	0	./.	4	1	4	2	34	19	34	20	4	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758368507	21	47790697	TC	T	540	PASS	PCNT	CCDS33592.1	r.?	-	-	Del	intronic	D	47790697	47790701	1	30	488.133	-	-	3	1	1	PCNT|CCDS33592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCNT|CCDS33592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	5	4	9	6	19	17	19	17	9	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758379285	3	1150107	AC	A	360	PASS	CNTN6	CCDS2557.1	r.?	-	-	Del	intronic	D	1150107	1150109	1	12	323.334	-	-	1	1	1	CNTN6|CCDS2557.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CNTN6|CCDS2557.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	5	1	5	2	18	17	18	17	5	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758392352	3	42223805	TTC	T	269	PASS	TRAK1	CCDS43072.1	r.?	-	-	Del	intronic	D	42223805	42223809	2	6	257.404	-	-	1	1	-	TRAK1|CCDS43072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAK1|CCDS43072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	5	0	7	0	21	23	21	23	7	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758402222	3	74529982	TATTG	T	689	PASS	CNTN3	CCDS33790.1	r.?	-	-	Del	intronic	D	74529982	74529990	4	33	646.668	-	-	1	1	1	CNTN3|CCDS33790.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN3|CCDS33790.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	2	10	3	11	22	34	22	34	3	11	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758435909	3	187240402	GT	G	300	PASS	-	-	-	-	-	Del	-	D	187240402	187240408	1	10	268.241	-	-	5	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	4	1	18	21	18	21	4	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758440051	4	992410	ATCAC	A	269	PASS	IDUA	CCDS3343.1	r.?	-	-	Del	intronic	D	992410	992419	4	12	269.328	-	-	2	1	1	IDUA|CCDS3343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IDUA|CCDS3343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	3	2	4	3	13	30	13	30	4	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758448352	4	27394682	AAC	A	360	PASS	-	-	-	-	-	Del	-	D	27394682	27394688	2	15	323.194	-	-	2	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	4	2	5	4	24	26	24	26	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758449278	4	29928108	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	29928108	29928115	1	21	426.109	-	-	6	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	2	6	5	6	28	22	28	22	5	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758450723	4	35175519	ATAATT	A	267	PASS	-	-	-	-	-	Del	-	D	35175519	35175530	5	16	323.194	-	-	2	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	3	6	3	23	18	23	18	6	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758451036	4	36086716	CTTTA	C	509	PASS	ARAP2	CCDS3441.1	r.?	-	-	Del	intronic	D	36086716	36086724	4	30	484.791	-	-	1	1	1	ARAP2|CCDS3441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARAP2|CCDS3441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	5	4	7	5	22	17	22	17	7	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758462337	4	70887876	CAT	C	354	PASS	-	-	-	-	-	Del	-	D	70887876	70887881	2	36	592.523	-	-	2	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	8	4	10	25	28	25	28	4	10	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758469966	4	96799950	GC	G	660	PASS	-	-	-	-	-	Del	-	D	96799950	96799952	1	42	592.523	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	6	9	7	31	17	31	17	9	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758471714	4	103442497	GAAATGATGA	G	377	PASS	NFKB1	CCDS3657.1	r.?	-	-	Del	intronic	D	103442497	103442510	9	56	697.244	-	-	1	1	1	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	7	6	0	0	18	20	18	20	7	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758474473	4	113448927	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	113448927	113448934	1	28	479.373	-	-	6	1	1	-	-	./.	0	0	0	0	20	10	21	10	0	0	./.	6	3	9	3	30	20	30	21	9	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758476975	4	121537945	GA	G	540	PASS	-	-	-	-	-	Del	-	D	121537945	121537947	1	30	478.169	-	-	1	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	5	4	6	5	19	15	19	15	6	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758477230	4	122236202	GACCT	G	300	PASS	-	-	-	-	-	Del	-	D	122236202	122236209	4	12	269.328	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	5	4	23	18	23	18	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758481496	4	136230447	AT	A	600	PASS	-	-	-	-	-	Del	-	D	136230447	136230452	1	32	538.055	-	-	4	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	7	3	9	15	27	15	27	3	9	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758483809	4	143767073	ACG	A	660	PASS	INPP4B	CCDS47112.1	r.?	-	-	Del	intronic	D	143767073	143767085	2	42	592.523	-	-	5	1	1	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	5	6	6	7	21	22	21	22	6	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758490451	4	164175432	GC	G	300	PASS	-	-	-	-	-	Del	-	D	164175432	164175435	1	12	263.308	-	-	2	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	2	3	5	4	32	18	32	18	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758495127	4	178029004	AG	A	660	PASS	-	-	-	-	-	Del	-	D	178029004	178029006	1	42	592.523	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	5	8	5	24	18	24	18	8	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758499672	4	189225670	TG	T	300	PASS	-	-	-	-	-	Del	-	D	189225670	189225672	1	6	250.063	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	0	10	0	23	17	23	17	10	0	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758516691	5	50285196	AG	A	660	PASS	-	-	-	-	-	Del	-	D	50285196	50285198	1	42	593.419	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	5	6	6	21	18	21	18	6	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758528557	5	91391363	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	91391363	91391373	1	12	266.726	-	-	9	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	3	2	3	2	32	27	32	28	3	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758529826	5	96353128	C	CT	900	PASS	LNPEP	CCDS4087.1	r.?	-	-	Ins	intronic	I	96353128	96353137	1	52	800.177	-	-	8	1	1	LNPEP|CCDS4087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LNPEP|CCDS4087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	12	4	14	22	32	22	32	4	14	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758532290	5	104526271	CTAA	C	420	PASS	-	-	-	-	-	Del	-	D	104526271	104526278	3	20	377.63	-	-	2	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	3	4	3	4	15	21	15	21	3	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758549838	5	164922824	CT	C	300	PASS	-	-	-	-	-	Del	-	D	164922824	164922829	1	6	269.736	-	-	4	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	5	0	5	3	24	24	24	24	5	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758563585	6	22431605	GT	G	300	PASS	-	-	-	-	-	Del	-	D	22431605	22431610	1	12	269.86	-	-	4	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	3	3	20	16	20	16	3	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758568724	6	35613892	C	CA	720	PASS	FKBP5	CCDS4808.1	r.?	-	-	Ins	intronic	I	35613892	35613901	1	48	639.234	-	-	8	1	1	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	19	0	0	./.	5	7	6	9	33	30	33	30	6	10	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758570667	6	41919313	C	CAA	269	PASS	CCND3	CCDS47426.1	r.?	-	-	Ins	intronic	I	41919313	41919323	2	12	253.604	-	-	9	1	-	CCND3|CCDS47426.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCND3|CCDS47426.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	4	4	13	17	14	17	4	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758572733	6	47873791	GA	G	360	PASS	C6orf138	ENST00000398738	r.?	-	-	Del	intronic	D	47873791	47873795	1	15	323.832	-	-	3	1	1	C6orf138|ENST00000398738|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf138|ENST00000398738|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	2	6	2	22	18	22	18	6	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758583091	6	82428638	CAAG	C	329	PASS	FAM46A	ENST00000412306	r.?	-	-	Del	intronic	D	82428638	82428644	3	12	323.832	-	-	1	1	1	FAM46A|ENST00000412306|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM46A|ENST00000412306|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	1	10	1	24	12	24	12	10	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758591718	6	116081699	CTAAAAGACCATCACGGTCAGCTCCAGAGCTCCTCATAGGGTCAGCT	C	261	PASS	-	-	-	-	-	Del	-	D	116081699	116081746	46	24	485.747	-	-	1	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	7	2	4	1	8	7	11	8	7	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758606227	7	1850808	GTCTGGGATGGGGGCCAGAAGGGACTTCTCCTT	G	377	PASS	MAD1L1	CCDS43539.1	r.?	-	-	Del	downstream	D	1850808	1850842	32	14	693.532	-	-	1	1	1	MAD1L1|CCDS43539.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MAD1L1|CCDS43539.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	9	10	9	0	0	./.	0	13	0	8	7	26	7	31	0	13	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758622933	7	53568034	G	GT	989	PASS	-	-	-	-	-	Ins	-	I	53568034	53568036	1	90	903.315	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	9	8	10	10	23	33	24	33	10	10	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758627976	7	67716097	GC	G	300	PASS	-	-	-	-	-	Del	-	D	67716097	67716100	1	10	269.754	-	-	2	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	1	4	2	6	19	27	19	27	2	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758653335	7	147817367	C	CT	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	147817367	147817377	1	12	266.141	-	-	9	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	2	3	5	5	25	26	25	27	5	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758667240	8	27949254	CA	C	360	PASS	ELP3	CCDS6065.1	r.?	-	-	Del	upstream	D	27949254	27949256	1	15	324.193	-	-	1	1	1	ELP3|CCDS6065.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ELP3|CCDS6065.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	5	3	18	15	18	15	5	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758670376	8	38495381	TTTG	T	480	PASS	-	-	-	-	-	Del	-	D	38495381	38495405	3	21	432.257	-	-	7	1	-	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	6	2	5	2	25	20	25	20	6	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758670406	8	38617546	CT	C	300	PASS	TACC1	ENST00000330691	r.?	-	-	Del	intronic	D	38617546	38617554	1	6	270.161	-	-	7	1	1	TACC1|ENST00000330691|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TACC1|ENST00000330691|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	5	1	30	16	30	16	5	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758671484	8	41790761	TGGCTGCTGTGGAGGCGGTGGTGGC	T	261	PASS	MYST3	CCDS6124.1	r.5497_5520del24	c.4953_4976del24	p.P1652_P1659delPPPPPQQP	Del	inframe	D	41790761	41790794	24	18	481.473	-	-	1	1	-	MYST3|CCDS6124.1|r.5497_5520del24|c.4953_4976del24|p.P1652_P1659delPPPPPQQP|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	MYST3|CCDS6124.1|r.5497_5520del24|c.4953_4976del24|p.P1652_P1659delPPPPPQQP|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	4	6	4	6	0	0	./.	1	8	0	7	10	18	10	19	1	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758676578	8	63852405	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	63852405	63852415	1	24	427.441	-	-	9	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	3	5	6	7	21	25	21	25	6	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758676970	8	65616260	TTC	T	480	PASS	CYP7B1	CCDS6180.1	r.?	-	-	Del	intronic	D	65616260	65616268	2	21	432.257	-	-	3	1	1	CYP7B1|CCDS6180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP7B1|CCDS6180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	6	3	10	21	27	21	27	3	10	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758677648	8	68203193	GT	G	360	PASS	ARFGEF1	CCDS6199.1	r.?	-	-	Del	intronic	D	68203193	68203198	1	12	321.785	-	-	4	1	1	ARFGEF1|CCDS6199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARFGEF1|CCDS6199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	5	1	5	23	25	23	25	1	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758680195	8	76961788	GT	G	720	PASS	-	-	-	-	-	Del	-	D	76961788	76961794	1	45	648.386	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	8	4	9	4	23	27	23	27	9	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758680745	8	79528225	TGAA	T	749	PASS	-	-	-	-	-	Del	-	D	79528225	79528230	3	54	702.418	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	8	5	10	6	19	18	19	18	10	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758692817	8	121277836	GA	G	360	PASS	COL14A1	CCDS34938.1	r.?	-	-	Del	intronic	D	121277836	121277842	1	15	324.193	-	-	5	1	1	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	4	4	15	21	15	21	4	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758693775	8	124574388	C	CTTGA	327	PASS	-	-	-	-	-	Ins	-	I	124574388	124574390	4	18	361.367	-	-	0	1	1	-	-	./.	0	0	0	0	15	15	15	16	0	0	./.	2	5	2	5	20	16	20	16	2	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758701268	9	3799406	TA	T	660	PASS	-	-	-	-	-	Del	-	D	3799406	3799411	1	42	595.018	-	-	4	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	5	11	6	25	17	25	17	11	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758703776	9	11494096	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	11494096	11494099	1	32	534.905	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	7	3	11	7	33	22	33	22	11	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758717896	9	76337716	AG	A	269	PASS	-	-	-	-	-	Del	-	D	76337716	76337719	1	12	267.452	-	-	2	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	2	3	3	6	17	23	17	23	3	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758719366	9	81016344	TGTTTACAC	T	290	PASS	-	-	-	-	-	Del	-	D	81016344	81016353	8	27	539.721	-	-	1	1	-	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	2	8	3	8	14	27	14	27	3	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758725276	9	101282057	G	GT	540	PASS	GABBR2	CCDS6736.1	r.?	-	-	Ins	intronic	I	101282057	101282064	1	28	477.802	-	-	6	1	1	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	6	5	6	12	19	12	19	5	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758734312	9	130613867	G	GT	300	PASS	ENG	CCDS6880.1	r.?	-	-	Ins	intronic	I	130613867	130613869	1	12	267.452	-	-	1	1	1	ENG|CCDS6880.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENG|CCDS6880.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	3	2	3	2	22	22	22	22	3	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758735565	9	133819180	C	CG	420	PASS	FIBCD1	CCDS6937.1	r.?	-	-	Ins	upstream	I	133819180	133819185	1	8	373.229	-	-	4	1	1	FIBCD1|CCDS6937.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FIBCD1|CCDS6937.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	5	10	5	11	0	0	./.	7	0	7	1	15	10	15	10	7	1	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758738372	X	4060110	TC	T	480	PASS	-	-	-	-	-	Del	-	D	4060110	4060117	1	21	428.768	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	6	2	8	6	26	33	26	33	8	6	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758739674	X	8892047	TA	T	540	PASS	-	-	-	-	-	Del	-	D	8892047	8892049	1	28	487.105	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	3	7	4	28	22	28	22	7	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758739989	X	9956543	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	9956543	9956549	1	24	481.686	-	-	5	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	2	7	3	8	18	29	18	29	3	8	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758740162	X	10915516	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	10915516	10915523	1	20	372.237	-	-	6	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	3	4	5	4	24	23	24	23	5	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758740338	X	12160902	ATC	A	300	PASS	FRMPD4	CCDS35201.1	r.?	-	-	Del	intronic	D	12160902	12160920	2	10	270.614	-	-	8	1	1	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	1	4	1	4	23	32	23	32	1	4	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758752091	X	68041276	CT	C	360	PASS	-	-	-	-	-	Del	-	D	68041276	68041281	1	15	324.737	-	-	4	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	2	4	2	18	17	18	17	4	2	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758755553	X	84059632	GT	G	305	PASS	-	-	-	-	-	Del	-	D	84059632	84059642	1	16	324.737	-	-	9	1	1	-	-	./.	0	0	0	0	25	17	25	17	0	0	./.	3	3	6	3	21	14	21	14	6	3	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758759546	X	100175163	T	TG	300	PASS	XKRX	CCDS14476.1	r.?	-	-	Ins	intronic	I	100175163	100175164	1	10	267.604	-	-	0	1	1	XKRX|CCDS14476.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XKRX|CCDS14476.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	2	5	13	25	13	26	2	5	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758766695	X	131791567	AT	A	360	PASS	HS6ST2	CCDS48169.1	r.?	-	-	Del	intronic	D	131791567	131791574	1	15	324.737	-	-	6	1	1	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	3	7	21	31	21	31	3	7	1	1	1	1	1	1	1	1
2772610	PD7317a	PD7317b	2758769971	X	145415101	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	145415101	145415111	1	35	523.166	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	6	6	6	33	37	34	37	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759712629	1	885963	GCA	G	480	PASS	NOC2L	CCDS3.1	r.?	-	-	Del	intronic	D	885963	885971	2	21	430.433	-	-	3	1	-	NOC2L|CCDS3.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOC2L|CCDS3.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	2	6	3	19	13	19	13	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759712750	1	1307360	CG	C	420	PASS	AURKAIP1	CCDS25.1	r.?	-	-	Del	downstream	D	1307360	1307368	1	18	373.619	-	-	7	1	1	AURKAIP1|CCDS25.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AURKAIP1|CCDS25.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	10	8	10	0	0	./.	5	2	9	3	23	23	23	23	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759712783	1	1476816	CG	C	480	PASS	SSU72	CCDS32.1	r.?	-	-	Del	downstream	D	1476816	1476824	1	21	417.188	-	-	7	1	1	SSU72|CCDS32.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C1orf70|CCDS44040.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	9	7	9	0	0	./.	6	2	8	4	27	23	27	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713053	1	2448929	CG	C	540	PASS	PANK4	CCDS42.1	r.?	-	-	Del	intronic	D	2448929	2448937	1	28	481.829	-	-	7	1	1	PANK4|CCDS42.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PANK4|CCDS42.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	6	5	8	27	29	27	29	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713147	1	3014376	TC	T	420	PASS	PRDM16	CCDS44048.1	r.?	-	-	Del	intronic	D	3014376	3014380	1	20	372.415	-	-	3	1	1	PRDM16|CCDS44048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDM16|CCDS44048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	3	5	3	17	13	17	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713235	1	3413038	AC	A	360	PASS	MEGF6	CCDS41237.1	r.?	-	-	Del	intronic	D	3413038	3413044	1	12	322.223	-	-	5	1	1	MEGF6|CCDS41237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEGF6|CCDS41237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	1	5	2	6	19	35	19	35	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713260	1	3545189	TC	T	300	PASS	TPRG1L	CCDS47.1	r.913delC	c.?	p.?	Del	3'UTR variant	D	3545189	3545195	1	12	269.021	-	-	5	1	1	TPRG1L|CCDS47.1|r.913delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TPRG1L|CCDS47.1|r.913delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	5	8	5	0	0	./.	3	2	3	2	17	16	17	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713380	1	4026677	CT	C	420	PASS	-	-	-	-	-	Del	-	D	4026677	4026684	1	20	376.629	-	-	6	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	3	5	25	19	25	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713436	1	4195429	TC	T	300	PASS	-	-	-	-	-	Del	-	D	4195429	4195435	1	10	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	1	4	4	5	19	23	19	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713538	1	4598404	GA	G	300	PASS	-	-	-	-	-	Del	-	D	4598404	4598410	1	10	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	4	1	4	2	22	4	22	4	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713830	1	5674062	GC	G	360	PASS	-	-	-	-	-	Del	-	D	5674062	5674069	1	12	322.825	-	-	6	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	1	5	3	7	21	17	21	17	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713966	1	5929919	G	GA	360	PASS	NPHP4	CCDS44052.1	r.?	-	-	Ins	intronic	I	5929919	5929927	1	15	319.213	-	-	7	1	1	NPHP4|CCDS44052.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPHP4|CCDS44052.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	9	12	0	0	./.	4	2	5	2	32	14	32	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759713981	1	6032955	CT	C	300	PASS	NPHP4	CCDS44052.1	r.?	-	-	Del	intronic	D	6032955	6032964	1	12	268.419	-	-	8	1	1	NPHP4|CCDS44052.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPHP4|CCDS44052.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	6	3	23	18	23	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759714206	1	6738883	AT	A	449	PASS	DNAJC11	CCDS87.1	r.?	-	-	Del	intronic	D	6738883	6738890	1	24	430.433	-	-	6	1	1	DNAJC11|CCDS87.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC11|CCDS87.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	5	3	5	4	17	17	17	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759714359	1	7170342	CT	C	300	PASS	CAMTA1	CCDS30576.1	r.?	-	-	Del	intronic	D	7170342	7170352	1	12	261.796	-	-	9	1	1	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	3	2	4	2	27	23	27	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759714499	1	7605271	TA	T	389	PASS	CAMTA1	CCDS30576.1	r.?	-	-	Del	intronic	D	7605271	7605277	1	14	376.629	-	-	5	1	1	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	6	1	6	2	27	25	27	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759715376	1	10012593	G	GT	269	PASS	NMNAT1	CCDS108.1	r.?	-	-	Ins	intronic	I	10012593	10012601	1	12	251.561	-	-	7	1	1	NMNAT1|CCDS108.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NMNAT1|CCDS108.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	12	19	13	0	0	./.	3	2	3	4	23	18	23	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759715561	1	10511390	A	AT	420	PASS	APITD1	CCDS114.1	r.?	-	-	Ins	intronic	I	10511390	10511393	1	18	371.813	-	-	2	1	1	APITD1|CCDS114.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	APITD1|CCDS114.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	2	5	4	24	19	24	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759715653	1	10757647	AC	A	300	PASS	CASZ1	CCDS41246.1	r.?	-	-	Del	intronic	D	10757647	10757656	1	6	269.021	-	-	8	1	1	CASZ1|CCDS41246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CASZ1|CCDS41246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	6	0	26	12	26	12	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759715749	1	11040104	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	11040104	11040113	1	12	319.213	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	5	1	9	23	29	23	29	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759715889	1	11422474	GT	G	600	PASS	-	-	-	-	-	Del	-	D	11422474	11422483	1	35	538.042	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	4	9	6	33	24	33	24	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716059	1	11976167	G	GT	300	PASS	KIAA2013	CCDS141.1	r.?	-	-	Ins	downstream	I	11976167	11976176	1	12	262.398	-	-	8	1	-	KIAA2013|CCDS141.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KIAA2013|ENST00000358733|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	7	5	29	19	29	19	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716063	1	11991165	CA	C	300	PASS	PLOD1	CCDS142.1	r.?	-	-	Del	upstream	D	11991165	11991175	1	12	268.419	-	-	9	1	1	PLOD1|CCDS142.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PLOD1|CCDS142.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	2	20	21	20	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716105	1	12173541	T	TGA	300	PASS	TNFRSF8	CCDS144.1	r.?	-	-	Ins	intronic	I	12173541	12173554	2	12	263	-	-	6	1	1	TNFRSF8|CCDS144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TNFRSF8|CCDS144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	6	2	30	19	30	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716116	1	12212910	CT	C	420	PASS	-	-	-	-	-	Del	-	D	12212910	12212919	1	18	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	5	2	6	15	25	15	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716219	1	12563715	A	AT	300	PASS	VPS13D	CCDS30588.1	r.?	-	-	Ins	intronic	I	12563715	12563723	1	6	261.194	-	-	7	1	1	VPS13D|CCDS30588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13D|CCDS30588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	5	0	7	1	23	5	23	5	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716388	1	12982354	CA	C	341	PASS	PRAMEF7	CCDS30593.1	r.?	-	-	Del	downstream	D	12982354	12982364	1	8	376.629	-	-	9	1	1	PRAMEF7|CCDS30593.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRAMEF23|ENST00000376192|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	7	0	7	1	37	6	37	6	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716450	1	13834739	CA	C	480	PASS	LRRC38	ENST00000376085	r.?	-	-	Del	intronic	D	13834739	13834748	1	24	426.821	-	-	8	1	1	LRRC38|ENST00000376085|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC38|ENST00000376085|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	3	6	4	23	22	23	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716690	1	14503652	CA	C	360	PASS	C1orf196	ENST00000412667	r.?	-	-	Del	intronic	D	14503652	14503662	1	15	311.988	-	-	9	1	1	C1orf196|ENST00000412667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf196|ENST00000412667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	2	5	17	20	17	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716724	1	14645997	AG	A	420	PASS	-	-	-	-	-	Del	-	D	14645997	14646004	1	20	374.221	-	-	6	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	4	5	21	13	21	13	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716756	1	14742621	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	14742621	14742629	1	10	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	15	0	0	./.	4	1	4	2	20	33	20	33	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716814	1	14934358	A	AG	540	PASS	ENSG00000189337	CCDS152.2	r.?	-	-	Ins	intronic	I	14934358	14934364	1	28	478.217	-	-	5	1	1	ENSG00000189337|CCDS152.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000189337|CCDS152.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	12	10	0	0	./.	3	6	3	6	23	26	24	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759716917	1	15300029	AT	A	360	PASS	ENSG00000189337	CCDS152.2	r.?	-	-	Del	intronic	D	15300029	15300039	1	16	322.223	-	-	9	1	1	ENSG00000189337|CCDS152.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000189337|CCDS152.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	3	3	4	3	17	19	17	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759717396	1	16462198	CG	C	600	PASS	EPHA2	CCDS169.1	r.1534delC	c.1379delC	p.P460fs*33	Del	frameshift	D	16462198	16462205	1	27	535.633	-	-	6	1	1	EPHA2|CCDS169.1|r.1534delC|c.1379delC|p.P460fs*33|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	EPHA2|CCDS169.1|r.1534delC|c.1379delC|p.P460fs*33|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	13	10	13	0	0	./.	8	2	9	3	27	17	27	17	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718056	1	17685332	GA	G	360	PASS	PADI4	CCDS180.1	r.1585delA	c.1559delA	p.K522fs*5	Del	frameshift	D	17685332	17685341	1	7	321.019	-	-	8	1	1	PADI4|CCDS180.1|r.1585delA|c.1559delA|p.K522fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PADI4|CCDS180.1|r.1585delA|c.1559delA|p.K522fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	9	14	9	0	0	./.	6	0	8	0	22	0	22	0	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718073	1	17715099	TG	T	300	PASS	-	-	-	-	-	Del	-	D	17715099	17715105	1	12	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	3	4	18	24	18	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718301	1	18395849	TA	T	538	PASS	-	-	-	-	-	Del	-	D	18395849	18395859	1	35	538.042	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	13	8	0	0	./.	6	4	9	4	20	19	21	19	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718405	1	18830761	TA	T	300	PASS	-	-	-	-	-	Del	-	D	18830761	18830763	1	10	266.613	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	1	5	1	26	7	26	7	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718731	1	19818582	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	19818582	19818589	1	16	318.008	-	-	6	1	1	-	-	./.	0	0	0	0	10	12	11	12	0	0	./.	3	3	6	4	28	22	28	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718837	1	20098315	AT	A	291	PASS	TMCO4	CCDS198.1	r.?	-	-	Del	intronic	D	20098315	20098323	1	16	322.825	-	-	7	1	1	TMCO4|CCDS198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMCO4|CCDS198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	3	3	4	5	21	25	21	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718879	1	20232233	CA	C	360	PASS	OTUD3	CCDS41279.1	r.?	-	-	Del	intronic	D	20232233	20232242	1	12	322.825	-	-	8	1	1	OTUD3|CCDS41279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTUD3|CCDS41279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	1	5	1	5	14	24	14	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718880	1	20236886	AT	A	300	PASS	OTUD3	CCDS41279.1	r.3846delU	c.?	p.?	Del	3'UTR variant	D	20236886	20236896	1	12	269.021	-	-	9	1	1	OTUD3|CCDS41279.1|r.3846delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	OTUD3|CCDS41279.1|r.3846delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	4	3	23	17	23	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759718999	1	20756349	C	CG	480	PASS	-	-	-	-	-	Ins	-	I	20756349	20756356	1	25	423.209	-	-	6	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	4	4	4	4	17	21	17	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759719129	1	21120591	TC	T	360	PASS	-	-	-	-	-	Del	-	D	21120591	21120595	1	15	322.825	-	-	3	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	2	6	4	22	23	22	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759719180	1	21301379	GA	G	480	PASS	EIF4G3	CCDS214.1	r.?	-	-	Del	intronic	D	21301379	21301387	1	24	430.433	-	-	7	1	1	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	5	6	7	25	22	25	22	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759719227	1	21391145	TA	T	420	PASS	EIF4G3	CCDS214.1	r.?	-	-	Del	intronic	D	21391145	21391155	1	20	376.629	-	-	9	1	1	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	4	4	4	28	20	28	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720060	1	23778754	CCTT	C	329	PASS	ASAP3	CCDS44087.1	r.?	-	-	Del	intronic	D	23778754	23778761	3	15	322.825	-	-	2	1	1	ASAP3|CCDS44087.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASAP3|CCDS44087.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	4	2	6	2	21	16	21	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720062	1	23784018	A	AT	420	PASS	ASAP3	CCDS44087.1	r.?	-	-	Ins	intronic	I	23784018	23784027	1	20	371.813	-	-	8	1	1	ASAP3|CCDS44087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASAP3|CCDS44087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	3	4	3	4	25	20	25	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720267	1	24259734	AAAG	A	264	PASS	-	-	-	-	-	Del	-	D	24259734	24259744	3	6	269.021	-	-	3	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	0	5	1	6	18	21	18	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720330	1	24371107	CT	C	300	PASS	-	-	-	-	-	Del	-	D	24371107	24371116	1	12	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	4	4	25	14	25	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720465	1	24815299	CA	C	300	PASS	-	-	-	-	-	Del	-	D	24815299	24815309	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	1	4	1	5	15	28	15	28	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720486	1	24875983	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	24875983	24875988	1	15	319.213	-	-	4	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	4	2	7	4	29	18	30	18	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720538	1	24993263	CA	C	300	PASS	SRRM1	CCDS255.1	r.?	-	-	Del	intronic	D	24993263	24993272	1	10	267.215	-	-	8	1	1	SRRM1|CCDS255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRRM1|CCDS255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	1	5	1	11	17	11	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759720600	1	25165500	G	GT	300	PASS	CLIC4	CCDS256.1	r.?	-	-	Ins	intronic	I	25165500	25165507	1	10	266.01	-	-	6	1	1	CLIC4|CCDS256.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLIC4|CCDS256.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	1	7	19	24	19	24	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721004	1	26667831	CA	C	457	PASS	AIM1L	CCDS30648.1	r.?	-	-	Del	intronic	D	26667831	26667841	1	25	425.015	-	-	9	1	1	AIM1L|CCDS30648.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIM1L|CCDS30648.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	4	7	5	26	22	26	22	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721131	1	27104830	AT	A	300	PASS	ARID1A	CCDS285.1	r.?	-	-	Del	intronic	D	27104830	27104840	1	10	269.021	-	-	9	1	1	ARID1A|CCDS285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID1A|CCDS285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	5	2	24	20	24	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721218	1	27432032	AC	A	300	PASS	SLC9A1	CCDS295.1	r.?	-	-	Del	intronic	D	27432032	27432038	1	6	269.021	-	-	5	1	1	SLC9A1|CCDS295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A1|ENST00000374086|r.2092delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	10	9	10	0	0	./.	5	0	6	0	26	12	26	12	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721266	1	27680354	CCT	C	300	PASS	SYTL1	CCDS298.1	r.1832_1833delCU	c.?	p.?	Del	3'UTR variant	D	27680354	27680365	2	12	266.613	-	-	5	1	1	SYTL1|CCDS298.1|r.1832_1833delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SYTL1|CCDS298.1|r.1832_1833delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	3	3	23	17	23	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721460	1	28466588	CT	C	569	PASS	-	-	-	-	-	Del	-	D	28466588	28466598	1	35	538.042	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	4	7	4	26	22	26	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721474	1	28528601	CA	C	389	PASS	DNAJC8	CCDS41292.1	r.?	-	-	Del	intronic	D	28528601	28528611	1	20	376.629	-	-	9	1	1	DNAJC8|CCDS41292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC8|CCDS41292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	3	5	3	23	15	23	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721571	1	28728113	CT	C	300	PASS	PHACTR4	CCDS41293.1	r.?	-	-	Del	intronic	D	28728113	28728122	1	12	259.99	-	-	8	1	1	PHACTR4|CCDS41293.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PHACTR4|CCDS41293.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	2	3	20	11	20	11	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721910	1	29445496	G	GT	540	PASS	EPB41	CCDS331.1	r.4748_4749insu	c.?	p.?	Ins	3'UTR variant	I	29445496	29445498	1	24	477.615	-	-	1	1	1	EPB41|CCDS331.1|r.4748_4749insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	EPB41|CCDS331.1|r.4748_4749insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	7	10	7	10	0	0	./.	2	7	3	7	28	23	28	23	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721925	1	29469984	GT	G	300	PASS	SFRS4	CCDS333.1	r.?	-	-	Del	downstream	D	29469984	29469993	1	12	267.817	-	-	8	1	1	SFRS4|CCDS333.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SFRS4|CCDS333.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	7	12	7	0	0	./.	3	2	7	5	30	20	30	20	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759721987	1	29612688	TG	T	540	PASS	PTPRU	CCDS335.1	r.?	-	-	Del	intronic	D	29612688	29612696	1	30	482.431	-	-	7	1	1	PTPRU|CCDS335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRU|CCDS335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	4	5	6	7	24	21	24	21	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722011	1	29707127	A	AT	480	PASS	ENSG00000231360	ENST00000455342	r.?	-	-	Ins	intronic	I	29707127	29707135	1	25	424.413	-	-	7	1	1	ENSG00000231360|ENST00000455342|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000231360|ENST00000455342|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	13	10	0	0	./.	4	4	6	7	33	33	33	34	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722043	1	29808351	G	GA	329	PASS	ENSG00000231360	ENST00000455342	r.?	-	-	Ins	intronic	I	29808351	29808358	1	16	316.202	-	-	6	1	1	ENSG00000231360|ENST00000455342|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000231360|ENST00000455342|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	4	3	29	30	30	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722552	1	31701103	C	CA	300	PASS	NKAIN1	ENST00000373736	r.?	-	-	Ins	intronic	I	31701103	31701110	1	10	263.602	-	-	6	1	1	NKAIN1|ENST00000373736|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NKAIN1|ENST00000373736|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	4	1	8	2	38	20	38	20	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722553	1	31702392	AT	A	480	PASS	NKAIN1	ENST00000373736	r.?	-	-	Del	intronic	D	31702392	31702402	1	25	430.433	-	-	9	1	1	NKAIN1|ENST00000373736|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN1|ENST00000373736|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	4	4	6	21	25	21	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722744	1	32266158	G	GC	300	PASS	SPOCD1	CCDS347.1	r.1543_1544insg	c.1485_1486insG	p.Q496fs*58	Ins	frameshift	I	32266158	32266165	1	10	266.01	-	-	6	1	1	SPOCD1|CCDS347.1|r.1543_1544insg|c.1485_1486insG|p.Q496fs*58|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	SPOCD1|CCDS347.1|r.1543_1544insg|c.1485_1486insG|p.Q496fs*58|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	5	8	5	8	0	0	./.	4	1	5	6	23	37	23	37	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722751	1	32279234	C	CT	418	PASS	SPOCD1	CCDS347.1	r.?	-	-	Ins	intronic	I	32279234	32279242	1	9	425.617	-	-	7	1	1	SPOCD1|CCDS347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPOCD1|CCDS347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	12	19	13	0	0	./.	0	8	1	8	27	30	27	31	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722937	1	32815910	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	32815910	32815920	1	18	370.006	-	-	9	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	2	5	3	5	25	31	26	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759722980	1	32956197	CT	C	300	PASS	ZBTB8B	CCDS44104.1	r.?	-	-	Del	downstream	D	32956197	32956207	1	12	269.021	-	-	9	1	1	ZBTB8B|CCDS44104.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZBTB8B|ENST00000291374|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	2	3	21	22	21	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723054	1	33156825	C	CA	360	PASS	SYNC	CCDS367.2	r.?	-	-	Ins	intronic	I	33156825	33156835	1	12	318.611	-	-	9	1	1	SYNC|CCDS367.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYNC|CCDS367.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	5	3	9	27	28	27	29	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723086	1	33213897	CA	C	300	PASS	KIAA1522	CCDS41298.1	r.?	-	-	Del	intronic	D	33213897	33213907	1	12	266.01	-	-	9	1	1	KIAA1522|CCDS41298.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1522|CCDS41298.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	2	3	4	5	26	24	26	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723134	1	33360557	AAGG	A	420	PASS	HPCA	CCDS370.1	r.?	-	-	Del	downstream	D	33360557	33360564	3	18	376.629	-	-	2	1	1	HPCA|CCDS370.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	TMEM54|CCDS371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	5	2	5	4	27	22	27	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723191	1	33519663	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	33519663	33519672	1	20	363.384	-	-	8	1	1	-	-	./.	0	0	0	0	18	14	20	14	0	0	./.	3	4	3	6	25	26	25	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723221	1	33674046	G	GT	416	PASS	-	-	-	-	-	Ins	-	I	33674046	33674054	1	30	478.819	-	-	7	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	4	5	9	5	34	24	35	24	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723228	1	33699576	TA	T	300	PASS	-	-	-	-	-	Del	-	D	33699576	33699580	1	12	269.021	-	-	3	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	2	3	5	3	24	24	24	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723281	1	33869960	CA	C	420	PASS	-	-	-	-	-	Del	-	D	33869960	33869969	1	8	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	0	7	0	7	9	24	9	24	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759723618	1	35277049	T	TTTG	269	PASS	-	-	-	-	-	Ins	-	I	35277049	35277069	3	12	259.99	-	-	6	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	3	3	3	28	22	28	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724034	1	36656371	TA	T	269	PASS	-	-	-	-	-	Del	-	D	36656371	36656379	1	12	256.378	-	-	7	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	2	6	4	26	22	26	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724245	1	37388029	AC	A	300	PASS	GRIK3	CCDS416.1	r.?	-	-	Del	intronic	D	37388029	37388035	1	10	269.021	-	-	5	1	1	GRIK3|CCDS416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK3|CCDS416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	8	2	22	20	22	20	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724346	1	37786424	TA	T	420	PASS	-	-	-	-	-	Del	-	D	37786424	37786433	1	20	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	4	3	6	7	28	26	28	26	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724363	1	37817504	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	37817504	37817512	1	7	311.988	-	-	7	1	1	-	-	./.	0	0	0	0	10	8	10	9	0	0	./.	6	0	6	0	32	11	32	11	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724372	1	37852342	TA	T	300	PASS	-	-	-	-	-	Del	-	D	37852342	37852352	1	12	263.602	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	6	23	34	23	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724437	1	38003953	C	CA	300	PASS	SNIP1	CCDS419.1	r.?	-	-	Ins	intronic	I	38003953	38003961	1	12	266.01	-	-	7	1	1	SNIP1|CCDS419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNIP1|CCDS419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	5	12	6	0	0	./.	2	3	6	6	21	31	21	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724591	1	38355413	A	AT	300	PASS	INPP5B	CCDS41306.1	r.?	-	-	Ins	intronic	I	38355413	38355421	1	12	265.408	-	-	7	1	1	INPP5B|CCDS41306.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INPP5B|CCDS41306.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	3	5	18	31	18	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724616	1	38407149	AC	A	436	PASS	INPP5B	CCDS41306.1	r.?	-	-	Del	intronic	D	38407149	38407156	1	32	538.042	-	-	6	1	1	INPP5B|CCDS41306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INPP5B|CCDS41306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	7	3	9	3	29	18	29	18	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724700	1	38647023	CT	C	358	PASS	-	-	-	-	-	Del	-	D	38647023	38647031	1	20	360.373	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	5	5	21	35	21	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724887	1	39322849	CA	C	360	PASS	RRAGC	CCDS430.1	r.?	-	-	Del	intronic	D	39322849	39322859	1	16	322.825	-	-	9	1	1	RRAGC|CCDS430.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RRAGC|CCDS430.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	4	3	15	33	15	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759724890	1	39327875	AT	A	300	PASS	MYCBP	CCDS431.1	r.?	-	-	Del	downstream	D	39327875	39327884	1	10	269.021	-	-	8	1	1	MYCBP|CCDS431.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RRAGC|CCDS430.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	5	1	37	20	37	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725190	1	39909485	CAT	C	360	PASS	MACF1	CCDS436.1	r.?	-	-	Del	intronic	D	39909485	39909492	2	15	322.825	-	-	3	1	1	MACF1|CCDS436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACF1|CCDS436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	2	4	2	6	21	24	21	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725240	1	40046146	AT	A	420	PASS	PABPC4	CCDS44114.1	r.?	-	-	Del	upstream	D	40046146	40046156	1	14	376.027	-	-	9	1	1	PABPC4|CCDS44114.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PABPC4|CCDS44114.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	11	8	11	0	0	./.	1	6	1	7	11	20	11	20	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725324	1	40305400	CT	C	360	PASS	TRIT1	CCDS30681.1	r.?	-	-	Del	downstream	D	40305400	40305410	1	12	322.825	-	-	9	1	1	TRIT1|CCDS30681.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TRIT1|CCDS30681.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	13	10	13	0	0	./.	1	5	2	8	33	20	33	20	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725408	1	40511973	C	CA	509	PASS	CAP1	CCDS41309.1	r.?	-	-	Ins	intronic	I	40511973	40511979	1	28	471.594	-	-	5	1	1	CAP1|CCDS41309.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CAP1|CCDS41309.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	6	6	9	34	30	35	30	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725413	1	40517542	G	GTT	300	PASS	CAP1	CCDS41309.1	r.?	-	-	Ins	intronic	I	40517542	40517552	2	12	263	-	-	9	1	-	CAP1|CCDS41309.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CAP1|CCDS41309.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	20	7	20	0	0	./.	2	3	2	5	20	26	20	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725448	1	40586915	AT	A	720	PASS	-	-	-	-	-	Del	-	D	40586915	40586922	1	45	645.65	-	-	6	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	8	4	8	4	35	14	35	14	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725481	1	40677286	CT	C	300	PASS	RLF	CCDS448.1	r.?	-	-	Del	intronic	D	40677286	40677296	1	6	269.021	-	-	9	1	1	RLF|CCDS448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RLF|CCDS448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	0	7	0	33	12	33	12	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725491	1	40719440	GAT	G	269	PASS	ZMPSTE24	CCDS449.1	r.?	-	-	Del	upstream	D	40719440	40719453	2	12	268.419	-	-	6	1	1	ZMPSTE24|CCDS449.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZMPSTE24|CCDS449.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	4	3	18	12	18	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725546	1	40888569	AGT	A	300	PASS	SMAP2	CCDS451.1	r.2511_2512delGU	c.?	p.?	Del	3'UTR variant	D	40888569	40888584	2	12	267.817	-	-	7	1	-	SMAP2|CCDS451.1|r.2511_2512delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SMAP2|CCDS451.1|r.2511_2512delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	4	3	18	21	18	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725614	1	41064493	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	41064493	41064501	1	24	423.811	-	-	7	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	3	5	4	20	37	20	38	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725685	1	41224237	GA	G	300	PASS	NFYC	CCDS44120.1	r.?	-	-	Del	intronic	D	41224237	41224247	1	10	269.021	-	-	9	1	1	NFYC|CCDS44120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFYC|CCDS44120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	4	2	30	19	30	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759725819	1	41572025	AC	A	472	PASS	SCMH1	CCDS30688.1	r.?	-	-	Del	intronic	D	41572025	41572032	1	21	430.433	-	-	6	1	1	SCMH1|CCDS30688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCMH1|CCDS30688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	6	2	8	15	33	15	33	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726022	1	42506943	GT	G	540	PASS	-	-	-	-	-	Del	-	D	42506943	42506945	1	28	479.421	-	-	1	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	6	5	9	23	26	23	26	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726268	1	43087944	C	CT	329	PASS	CCDC30	CCDS30690.1	r.?	-	-	Ins	intronic	I	43087944	43087951	1	12	319.213	-	-	6	1	1	CCDC30|CCDS30690.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC30|CCDS30690.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	5	1	5	1	29	6	30	6	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726564	1	43978193	GT	G	420	PASS	-	-	-	-	-	Del	-	D	43978193	43978203	1	18	376.629	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	5	3	5	18	28	18	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726681	1	44248485	AT	A	300	PASS	ST3GAL3	CCDS493.1	r.?	-	-	Del	intronic	D	44248485	44248495	1	6	269.021	-	-	9	1	1	ST3GAL3|CCDS493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST3GAL3|CCDS493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	0	5	1	8	10	36	10	36	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726734	1	44409674	T	TC	300	PASS	IPO13	CCDS503.1	r.?	-	-	Ins	upstream	I	44409674	44409675	1	10	258.184	-	-	0	1	-	IPO13|CCDS503.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	IPO13|CCDS503.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	6	9	6	9	0	0	./.	4	1	5	2	21	33	21	33	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726904	1	44838378	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	44838378	44838388	1	12	266.01	-	-	9	1	1	-	-	./.	0	0	0	0	7	17	7	18	0	0	./.	3	2	6	3	27	37	27	37	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759726920	1	44909982	GT	G	480	PASS	RNF220	CCDS510.1	r.?	-	-	Del	intronic	D	44909982	44909992	1	25	430.433	-	-	9	1	1	RNF220|CCDS510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF220|CCDS510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	4	5	5	29	25	29	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759727152	1	45661996	GT	G	269	PASS	ZSWIM5	CCDS41319.1	r.?	-	-	Del	intronic	D	45661996	45662006	1	12	269.021	-	-	9	1	1	ZSWIM5|CCDS41319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZSWIM5|CCDS41319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	2	3	4	4	16	14	16	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759727241	1	45989938	CA	C	300	PASS	PRDX1	CCDS522.1	r.?	-	-	Del	upstream	D	45989938	45989948	1	12	269.021	-	-	9	1	1	PRDX1|CCDS522.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PRDX1|CCDS522.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	5	7	5	0	0	./.	3	2	6	5	22	18	22	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759727292	1	46104176	A	AT	420	PASS	GPBP1L1	CCDS528.1	r.?	-	-	Ins	intronic	I	46104176	46104184	1	18	372.415	-	-	7	1	1	GPBP1L1|CCDS528.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPBP1L1|CCDS528.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	5	6	6	24	27	24	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759727668	1	47380513	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	47380513	47380521	1	16	425.617	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	13	10	0	0	./.	7	1	10	2	26	10	26	10	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759727705	1	47663955	TG	T	420	PASS	-	-	-	-	-	Del	-	D	47663955	47663965	1	14	374.221	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	6	3	6	18	24	18	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759727754	1	47795845	C	CA	509	PASS	CMPK1	CCDS549.1	r.?	-	-	Ins	upstream	I	47795845	47795855	1	30	478.217	-	-	9	1	1	CMPK1|CCDS549.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CMPK1|CCDS549.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	11	9	11	0	0	./.	4	5	5	8	29	33	29	34	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728244	1	50580422	G	GA	360	PASS	ELAVL4	CCDS44140.1	r.?	-	-	Ins	intronic	I	50580422	50580423	1	16	319.213	-	-	0	1	1	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	3	3	21	17	21	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728443	1	51613599	CT	C	480	PASS	C1orf185	CCDS44142.1	r.757delU	c.?	p.?	Del	3'UTR variant	D	51613599	51613607	1	24	430.433	-	-	7	1	1	C1orf185|CCDS44142.1|r.757delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C1orf185|CCDS44142.1|r.757delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	4	5	19	36	19	36	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728466	1	51711131	CT	C	480	PASS	RNF11	CCDS556.1	r.?	-	-	Del	intronic	D	51711131	51711141	1	25	430.433	-	-	9	1	1	RNF11|CCDS556.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF11|CCDS556.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	4	4	5	5	23	21	23	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728469	1	51718287	C	CA	300	PASS	RNF11	CCDS556.1	r.?	-	-	Ins	intronic	I	51718287	51718296	1	12	266.01	-	-	8	1	1	RNF11|CCDS556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF11|CCDS556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	7	2	24	20	24	20	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728497	1	51862024	GT	G	360	PASS	EPS15	CCDS557.1	r.?	-	-	Del	intronic	D	51862024	51862033	1	15	321.621	-	-	8	1	1	EPS15|CCDS557.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPS15|CCDS557.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	2	4	4	7	26	17	26	17	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728584	1	52235650	CT	C	420	PASS	OSBPL9	CCDS44145.1	r.?	-	-	Del	intronic	D	52235650	52235659	1	20	376.629	-	-	8	1	1	OSBPL9|CCDS44145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBPL9|CCDS44145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	3	5	5	20	22	20	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728797	1	53008880	TAC	T	480	PASS	ZCCHC11	CCDS30716.1	r.?	-	-	Del	intronic	D	53008880	53008894	2	21	430.433	-	-	6	1	1	ZCCHC11|CCDS30716.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZCCHC11|CCDS30716.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	6	3	6	15	23	15	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728891	1	53275358	CT	C	300	PASS	ZYG11B	CCDS30717.1	r.?	-	-	Del	intronic	D	53275358	53275368	1	12	261.194	-	-	9	1	1	ZYG11B|CCDS30717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZYG11B|CCDS30717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	4	3	18	16	18	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759728996	1	53680641	TA	T	600	PASS	CPT2	CCDS575.1	r.?	-	-	Del	downstream	D	53680641	53680650	1	27	536.235	-	-	8	1	1	CPT2|CCDS575.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C1orf123|CCDS576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	5	16	5	0	0	./.	2	8	4	8	29	28	29	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759729002	1	53697884	TA	T	300	PASS	MAGOH	CCDS577.1	r.?	-	-	Del	intronic	D	53697884	53697893	1	12	266.01	-	-	8	1	1	MAGOH|CCDS577.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGOH|CCDS577.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	2	6	7	6	7	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759729158	1	54380533	TA	T	300	PASS	DIO1	CCDS41339.1	r.?	-	-	Del	downstream	D	54380533	54380543	1	10	269.021	-	-	9	1	1	DIO1|CCDS41339.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DIO1|CCDS41339.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	4	8	4	0	0	./.	4	1	7	1	22	3	22	3	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759729496	1	55375256	TG	T	660	PASS	-	-	-	-	-	Del	-	D	55375256	55375261	1	30	591.846	-	-	4	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	9	2	11	3	33	28	33	28	11	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759729720	1	56265307	AT	A	540	PASS	-	-	-	-	-	Del	-	D	56265307	56265313	1	30	484.237	-	-	5	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	4	6	5	21	25	21	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759729776	1	56629113	TA	T	300	PASS	-	-	-	-	-	Del	-	D	56629113	56629119	1	12	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	4	4	17	17	17	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730055	1	57839653	AT	A	360	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	57839653	57839662	1	16	322.825	-	-	8	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	3	3	5	5	17	17	17	17	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730087	1	57965085	GA	G	269	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	57965085	57965090	1	12	267.215	-	-	4	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	4	19	23	19	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730111	1	58022480	GT	G	480	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	58022480	58022487	1	24	430.433	-	-	6	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	5	3	6	4	25	19	25	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730208	1	58589274	CT	C	360	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	58589274	58589278	1	16	322.825	-	-	3	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	3	4	22	22	22	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730306	1	59038628	AT	A	360	PASS	TACSTD2	CCDS609.1	r.?	-	-	Del	downstream	D	59038628	59038636	1	12	314.396	-	-	7	1	-	TACSTD2|CCDS609.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TACSTD2|CCDS609.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	5	1	4	1	21	16	21	16	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730323	1	59118333	GAA	G	420	PASS	MYSM1	CCDS41343.1	r.?	-	-	Del	downstream	D	59118333	59118338	2	18	375.425	-	-	4	1	1	MYSM1|CCDS41343.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MYSM1|CCDS41343.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	12	8	12	0	0	./.	5	2	5	2	29	15	29	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730353	1	59221764	TA	T	360	PASS	-	-	-	-	-	Del	-	D	59221764	59221774	1	12	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	5	3	7	16	33	16	33	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730435	1	59600708	GA	G	360	PASS	-	-	-	-	-	Del	-	D	59600708	59600718	1	15	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	4	2	22	2	22	2	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730622	1	60462152	AT	A	420	PASS	C1orf87	CCDS614.1	r.?	-	-	Del	intronic	D	60462152	60462155	1	20	376.629	-	-	2	1	1	C1orf87|CCDS614.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf87|CCDS614.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	5	5	16	22	16	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730664	1	60662461	CTAAT	C	269	PASS	-	-	-	-	-	Del	-	D	60662461	60662468	4	6	269.021	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	0	6	0	14	7	14	7	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730757	1	61120580	GC	G	540	PASS	-	-	-	-	-	Del	-	D	61120580	61120586	1	30	484.237	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	5	7	5	27	28	27	28	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730775	1	61171613	CTT	C	269	PASS	-	-	-	-	-	Del	-	D	61171613	61171617	2	10	266.01	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	1	4	2	29	11	29	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759730827	1	61420245	TA	T	420	PASS	NFIA	ENST00000371191	r.?	-	-	Del	intronic	D	61420245	61420253	1	20	376.027	-	-	7	1	1	NFIA|ENST00000371191|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFIA|ENST00000371191|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	4	5	15	29	15	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731108	1	62356820	GA	G	329	PASS	INADL	CCDS617.2	r.?	-	-	Del	intronic	D	62356820	62356830	1	15	322.825	-	-	9	1	1	INADL|CCDS617.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INADL|CCDS617.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	2	4	3	5	12	12	12	12	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731356	1	62911650	CA	C	480	PASS	USP1	CCDS621.1	r.?	-	-	Del	intronic	D	62911650	62911660	1	24	430.433	-	-	9	1	1	USP1|CCDS621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP1|CCDS621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	5	3	6	4	15	18	15	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731514	1	63439576	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	63439576	63439582	1	12	266.01	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	8	0	0	./.	3	2	4	3	24	19	24	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731698	1	64214611	AT	A	300	PASS	-	-	-	-	-	Del	-	D	64214611	64214620	1	12	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	3	2	4	2	21	15	21	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731726	1	64266975	C	CT	480	PASS	ROR1	CCDS626.1	r.?	-	-	Ins	intronic	I	64266975	64266984	1	21	424.413	-	-	8	1	1	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	20	17	21	0	0	./.	6	2	9	2	20	9	20	9	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731847	1	64739018	GA	G	420	PASS	-	-	-	-	-	Del	-	D	64739018	64739026	1	14	376.629	-	-	7	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	6	1	7	5	20	23	20	23	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759731975	1	65152440	AT	A	420	PASS	CACHD1	CCDS628.2	r.?	-	-	Del	intronic	D	65152440	65152448	1	20	376.629	-	-	7	1	1	CACHD1|CCDS628.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACHD1|CCDS628.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	13	21	13	0	0	./.	4	3	6	4	24	23	24	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759732023	1	65403356	CA	C	300	PASS	JAK1	CCDS41346.1	r.?	-	-	Del	intronic	D	65403356	65403366	1	10	269.021	-	-	9	1	1	JAK1|CCDS41346.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	JAK1|CCDS41346.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	4	17	4	0	0	./.	1	4	1	5	20	11	20	11	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759732204	1	65883457	G	GT	420	PASS	LEPR	CCDS631.1	r.?	-	-	Ins	upstream	I	65883457	65883465	1	18	369.404	-	-	7	1	1	LEPR|CCDS631.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	LEPR|CCDS631.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	22	10	22	0	0	./.	2	5	3	5	24	30	26	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759732423	1	66655420	AT	A	471	PASS	PDE4B	CCDS632.1	r.?	-	-	Del	intronic	D	66655420	66655430	1	40	591.846	-	-	9	1	1	PDE4B|CCDS632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4B|CCDS632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	4	7	5	7	15	33	15	33	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759732493	1	67074621	GT	G	480	PASS	SGIP1	CCDS30744.1	r.?	-	-	Del	intronic	D	67074621	67074630	1	25	430.433	-	-	8	1	1	SGIP1|CCDS30744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGIP1|CCDS30744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	4	4	5	26	25	26	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759732657	1	67586169	T	TC	420	PASS	C1orf141	CCDS30745.1	r.?	-	-	Ins	intronic	I	67586169	67586177	1	20	372.415	-	-	7	1	1	C1orf141|CCDS30745.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf141|CCDS30745.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	4	3	7	17	25	17	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759732954	1	68581497	AT	A	300	PASS	WLS	CCDS30750.1	r.?	-	-	Del	intronic	D	68581497	68581507	1	12	269.021	-	-	9	1	1	WLS|CCDS30750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WLS|CCDS30750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	4	4	18	10	18	10	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733156	1	69366091	CA	C	300	PASS	-	-	-	-	-	Del	-	D	69366091	69366100	1	10	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	1	4	3	4	17	16	17	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733176	1	69452025	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	69452025	69452028	2	12	267.817	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	4	3	28	28	28	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733372	1	70506990	AT	A	360	PASS	LRRC7	CCDS645.1	r.?	-	-	Del	intronic	D	70506990	70506999	1	16	322.825	-	-	8	1	1	LRRC7|CCDS645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC7|CCDS645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	14	3	14	0	0	./.	3	3	5	4	23	14	23	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733408	1	70726318	CT	C	360	PASS	ANKRD13C	CCDS648.2	r.4021delA	c.?	p.?	Del	3'UTR variant	D	70726318	70726326	1	16	322.825	-	-	7	1	1	ANKRD13C|CCDS648.2|r.4021delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ANKRD13C|CCDS648.2|r.4021delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	3	3	17	20	17	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733609	1	71521153	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	71521153	71521161	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	2	3	2	3	20	35	20	35	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733632	1	71584784	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	71584784	71584792	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	3	2	4	3	27	22	28	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759733860	1	72444708	TA	T	360	PASS	NEGR1	CCDS661.1	r.?	-	-	Del	intronic	D	72444708	72444718	1	15	322.825	-	-	9	1	1	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	4	2	5	25	31	25	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734132	1	73580140	CT	C	300	PASS	-	-	-	-	-	Del	-	D	73580140	73580147	1	12	268.419	-	-	6	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	5	2	28	12	28	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734218	1	73826563	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	73826563	73826572	1	16	318.611	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	3	5	4	24	23	24	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734227	1	73926632	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	73926632	73926639	1	15	318.611	-	-	6	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	2	5	16	19	16	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734237	1	73987059	GA	G	480	PASS	-	-	-	-	-	Del	-	D	73987059	73987069	1	24	430.433	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	3	5	5	20	22	20	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734351	1	74486857	GA	G	360	PASS	LRRIQ3	CCDS41350.1	r.?	-	-	Del	downstream	D	74486857	74486863	1	15	322.825	-	-	5	1	1	LRRIQ3|CCDS41350.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LRRIQ3|CCDS41350.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	7	6	7	0	0	./.	2	4	3	5	9	28	9	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734577	1	75634258	CT	C	480	PASS	-	-	-	-	-	Del	-	D	75634258	75634268	1	21	429.831	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	6	2	8	20	27	20	27	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734629	1	75867858	TG	T	420	PASS	SLC44A5	CCDS667.1	r.?	-	-	Del	intronic	D	75867858	75867860	1	18	376.629	-	-	1	1	1	SLC44A5|CCDS667.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC44A5|CCDS667.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	5	4	7	32	21	32	21	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734823	1	76622426	CT	C	540	PASS	ST6GALNAC3	CCDS672.1	r.?	-	-	Del	intronic	D	76622426	76622435	1	30	484.237	-	-	8	1	1	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	5	4	6	6	21	27	21	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759734922	1	76962271	AG	A	300	PASS	ST6GALNAC3	CCDS672.1	r.?	-	-	Del	intronic	D	76962271	76962276	1	12	262.398	-	-	4	1	1	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	3	2	4	9	24	9	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735008	1	77292871	TA	T	360	PASS	-	-	-	-	-	Del	-	D	77292871	77292880	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	2	4	4	4	12	17	12	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735025	1	77410562	GA	G	300	PASS	ST6GALNAC5	CCDS673.1	r.?	-	-	Del	intronic	D	77410562	77410572	1	12	269.021	-	-	9	1	1	ST6GALNAC5|CCDS673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST6GALNAC5|CCDS673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	3	4	21	18	21	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735066	1	77589928	CA	C	360	PASS	PIGK	CCDS674.1	r.?	-	-	Del	intronic	D	77589928	77589938	1	16	319.815	-	-	9	1	1	PIGK|CCDS674.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIGK|CCDS674.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	3	5	3	20	16	20	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735134	1	77807212	C	CT	300	PASS	AK5	CCDS676.1	r.?	-	-	Ins	intronic	I	77807212	77807220	1	12	266.01	-	-	7	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	6	8	7	0	0	./.	3	2	3	4	19	28	20	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735195	1	77981435	TA	T	420	PASS	AK5	CCDS676.1	r.?	-	-	Del	intronic	D	77981435	77981444	1	18	376.629	-	-	8	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	2	5	3	5	17	20	17	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735199	1	77988572	GT	G	269	PASS	AK5	CCDS676.1	r.?	-	-	Del	intronic	D	77988572	77988582	1	12	269.021	-	-	9	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	3	2	4	2	24	20	24	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735274	1	78254203	C	CT	360	PASS	FAM73A	CCDS681.1	r.?	-	-	Ins	intronic	I	78254203	78254212	1	7	319.213	-	-	8	1	1	FAM73A|CCDS681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM73A|CCDS681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	0	6	0	6	28	25	29	25	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735416	1	78642068	TA	T	300	PASS	-	-	-	-	-	Del	-	D	78642068	78642075	1	10	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	1	4	1	4	32	20	32	20	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735514	1	79153156	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	79153156	79153166	1	15	319.213	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	13	0	0	./.	4	2	5	2	26	16	26	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735515	1	79153634	AG	A	480	PASS	-	-	-	-	-	Del	-	D	79153634	79153636	1	24	430.433	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	5	3	6	3	24	26	24	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735608	1	79479546	AT	A	360	PASS	-	-	-	-	-	Del	-	D	79479546	79479555	1	12	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	1	5	3	19	19	19	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759735987	1	80843377	CT	C	300	PASS	-	-	-	-	-	Del	-	D	80843377	80843386	1	6	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	18	4	18	4	0	0	./.	0	5	2	5	18	21	18	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736025	1	81007337	GA	G	360	PASS	-	-	-	-	-	Del	-	D	81007337	81007343	1	7	322.825	-	-	5	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	6	0	7	0	29	2	29	2	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736052	1	81111748	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	81111748	81111753	1	12	261.796	-	-	4	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	2	3	5	6	24	38	24	38	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736146	1	81397339	CA	C	300	PASS	-	-	-	-	-	Del	-	D	81397339	81397349	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	1	4	2	3	12	17	12	17	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736213	1	81591387	CA	C	480	PASS	-	-	-	-	-	Del	-	D	81591387	81591397	1	24	429.229	-	-	9	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	5	3	7	4	26	19	26	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736326	1	81932290	TA	T	660	PASS	LPHN2	ENST00000370728	r.?	-	-	Del	intronic	D	81932290	81932295	1	36	591.846	-	-	4	1	1	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	8	5	9	24	32	24	32	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736391	1	82116953	GA	G	600	PASS	LPHN2	ENST00000370728	r.?	-	-	Del	intronic	D	82116953	82116963	1	36	538.042	-	-	9	1	1	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	5	5	6	24	30	24	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736426	1	82234603	TA	T	420	PASS	LPHN2	CCDS689.1	r.?	-	-	Del	intronic	D	82234603	82234613	1	20	374.823	-	-	9	1	1	LPHN2|CCDS689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN2|CCDS689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	3	4	5	20	16	20	16	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759736937	1	83960116	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	83960116	83960125	1	20	372.415	-	-	8	1	1	-	-	./.	0	0	0	0	20	16	21	16	0	0	./.	4	3	6	3	19	15	19	15	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737121	1	84601421	AT	A	300	PASS	PRKACB	CCDS691.1	r.?	-	-	Del	intronic	D	84601421	84601431	1	6	269.021	-	-	9	1	1	PRKACB|CCDS691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKACB|CCDS691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	0	5	0	7	1	23	1	23	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737253	1	85120695	CA	C	660	PASS	SSX2IP	CCDS699.1	r.?	-	-	Del	intronic	D	85120695	85120704	1	42	591.846	-	-	8	1	1	SSX2IP|CCDS699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSX2IP|CCDS699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	6	5	11	16	27	16	27	5	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737431	1	85646667	GA	G	300	PASS	SYDE2	CCDS44169.1	r.?	-	-	Del	intronic	D	85646667	85646672	1	6	269.021	-	-	4	1	1	SYDE2|CCDS44169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYDE2|CCDS44169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	0	6	1	27	13	27	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737465	1	85746422	GT	G	360	PASS	BCL10	CCDS704.1	r.?	-	-	Del	upstream	D	85746422	85746430	1	16	322.825	-	-	7	1	1	BCL10|CCDS704.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BCL10|CCDS704.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	3	3	23	26	23	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737527	1	85921124	C	CT	300	PASS	DDAH1	CCDS705.1	r.?	-	-	Ins	intronic	I	85921124	85921134	1	10	266.01	-	-	9	1	1	DDAH1|CCDS705.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DDAH1|CCDS705.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	4	1	5	2	26	20	27	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737538	1	85967265	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	85967265	85967268	1	30	477.615	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	4	6	5	26	32	26	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759737915	1	87129847	C	CA	313	PASS	-	-	-	-	-	Ins	-	I	87129847	87129854	1	15	319.213	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	2	5	14	28	14	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738005	1	87371154	CA	C	300	PASS	ENSG00000183291	ENST00000331835	r.?	-	-	Del	intronic	D	87371154	87371162	1	6	269.021	-	-	7	1	1	ENSG00000183291|ENST00000331835|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183291|ENST00000331835|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	0	6	0	28	5	28	5	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738168	1	87939437	TGA	T	269	PASS	-	-	-	-	-	Del	-	D	87939437	87939453	2	12	260.592	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	2	3	19	19	19	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738180	1	88009073	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	88009073	88009081	1	15	319.213	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	3	4	22	25	22	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738251	1	88263194	TA	T	360	PASS	-	-	-	-	-	Del	-	D	88263194	88263203	1	16	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	3	5	28	16	28	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738295	1	88437261	CT	C	660	PASS	-	-	-	-	-	Del	-	D	88437261	88437269	1	42	591.846	-	-	7	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	6	5	6	6	35	21	35	21	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738306	1	88467713	GA	G	360	PASS	-	-	-	-	-	Del	-	D	88467713	88467723	1	12	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	1	6	5	27	31	27	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738341	1	88658106	CA	C	360	PASS	-	-	-	-	-	Del	-	D	88658106	88658114	1	15	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	5	4	17	27	17	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738364	1	88734238	GT	G	420	PASS	-	-	-	-	-	Del	-	D	88734238	88734246	1	20	376.629	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	6	4	29	26	29	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738371	1	88754977	TA	T	300	PASS	-	-	-	-	-	Del	-	D	88754977	88754986	1	12	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	3	37	26	37	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738624	1	89688191	TA	T	540	PASS	-	-	-	-	-	Del	-	D	89688191	89688199	1	28	484.237	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	6	5	6	20	20	20	20	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738636	1	89757800	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	89757800	89757810	1	16	307.171	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	3	5	28	28	28	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738713	1	89967912	GA	G	600	PASS	-	-	-	-	-	Del	-	D	89967912	89967922	1	32	534.429	-	-	9	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	7	3	8	5	30	28	30	28	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738914	1	90762931	AT	A	420	PASS	-	-	-	-	-	Del	-	D	90762931	90762936	1	14	376.629	-	-	4	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	1	6	1	6	11	21	11	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759738966	1	91086349	GT	G	300	PASS	-	-	-	-	-	Del	-	D	91086349	91086357	1	6	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	0	6	1	34	5	34	5	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739055	1	91359362	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	91359362	91359363	1	30	478.217	-	-	0	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	5	4	6	27	20	28	20	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739252	1	91890915	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	91890915	91890922	1	12	266.01	-	-	6	1	1	-	-	./.	0	0	0	0	13	12	14	12	0	0	./.	3	2	4	2	27	26	27	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739387	1	92252320	CA	C	300	PASS	TGFBR3	CCDS30770.1	r.?	-	-	Del	intronic	D	92252320	92252330	1	6	266.01	-	-	9	1	1	TGFBR3|CCDS30770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TGFBR3|CCDS30770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	0	5	2	7	26	34	26	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739423	1	92348887	GA	G	360	PASS	TGFBR3	CCDS30770.1	r.?	-	-	Del	intronic	D	92348887	92348896	1	16	322.825	-	-	8	1	1	TGFBR3|CCDS30770.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TGFBR3|CCDS30770.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	4	4	28	23	28	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739455	1	92391505	TA	T	360	PASS	-	-	-	-	-	Del	-	D	92391505	92391514	1	12	321.621	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	1	6	1	29	8	29	8	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739663	1	93001136	TA	T	382	PASS	EVI5	CCDS30774.1	r.?	-	-	Del	intronic	D	93001136	93001146	1	20	376.629	-	-	9	1	1	EVI5|CCDS30774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EVI5|CCDS30774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	3	6	4	14	18	14	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739681	1	93055416	AC	A	446	PASS	EVI5	CCDS30774.1	r.?	-	-	Del	intronic	D	93055416	93055424	1	24	425.015	-	-	7	1	1	EVI5|CCDS30774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EVI5|CCDS30774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	3	7	15	21	15	21	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759739793	1	93395982	TA	T	300	PASS	FAM69A	CCDS44173.1	r.?	-	-	Del	intronic	D	93395982	93395992	1	12	269.021	-	-	9	1	1	FAM69A|CCDS44173.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM69A|CCDS44173.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	5	4	22	25	22	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759740498	1	95897854	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	95897854	95897860	1	7	319.213	-	-	5	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	0	6	2	7	27	30	27	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759740688	1	96788013	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	96788013	96788021	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	3	3	21	19	21	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759740913	1	97649869	CT	C	300	PASS	DPYD	CCDS30777.1	r.?	-	-	Del	intronic	D	97649869	97649878	1	6	269.021	-	-	8	1	1	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	7	22	7	0	0	./.	0	5	0	7	3	17	3	17	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759740971	1	98005740	GC	G	600	PASS	DPYD	CCDS30777.1	r.?	-	-	Del	intronic	D	98005740	98005746	1	32	538.042	-	-	5	1	1	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	3	7	3	7	9	19	9	19	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759741396	1	99899682	TC	T	480	PASS	-	-	-	-	-	Del	-	D	99899682	99899687	1	25	430.433	-	-	4	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	4	4	7	7	27	25	27	25	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759741474	1	100226214	CT	C	300	PASS	FRRS1	CCDS30780.1	r.?	-	-	Del	intronic	D	100226214	100226224	1	12	267.215	-	-	9	1	1	FRRS1|CCDS30780.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FRRS1|CCDS30780.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	4	3	29	22	29	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759741695	1	100900291	GT	G	540	PASS	CDC14A	CCDS769.1	r.?	-	-	Del	intronic	D	100900291	100900301	1	28	484.237	-	-	9	1	1	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	6	3	6	3	30	18	30	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759742271	1	102892790	TA	T	282	PASS	-	-	-	-	-	Del	-	D	102892790	102892797	1	21	430.433	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	6	3	7	9	19	9	19	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759742508	1	104370225	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	104370225	104370234	1	16	319.213	-	-	8	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	3	3	5	3	13	12	14	12	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759742518	1	104409583	CT	C	540	PASS	-	-	-	-	-	Del	-	D	104409583	104409591	1	30	483.033	-	-	7	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	4	7	5	21	25	21	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759742774	1	105373269	CA	C	600	PASS	-	-	-	-	-	Del	-	D	105373269	105373279	1	36	537.44	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	5	5	5	20	15	20	15	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759742818	1	105534672	CA	C	420	PASS	-	-	-	-	-	Del	-	D	105534672	105534682	1	20	376.629	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	3	4	4	17	17	17	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743023	1	106164564	CT	C	300	PASS	-	-	-	-	-	Del	-	D	106164564	106164574	1	12	266.613	-	-	9	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	2	3	3	4	13	17	13	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743185	1	107119603	TA	T	600	PASS	-	-	-	-	-	Del	-	D	107119603	107119613	1	35	538.042	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	6	5	8	29	28	29	28	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743193	1	107165338	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	107165338	107165346	1	6	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	0	5	1	7	10	18	10	18	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743385	1	108038882	AATT	A	420	PASS	-	-	-	-	-	Del	-	D	108038882	108038891	3	18	376.629	-	-	2	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	5	2	6	4	21	23	21	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743416	1	108207852	TAGA	T	329	PASS	VAV3	CCDS785.1	r.?	-	-	Del	intronic	D	108207852	108207861	3	16	322.223	-	-	2	1	1	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	5	5	16	22	16	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743453	1	108360438	G	GA	480	PASS	VAV3	CCDS785.1	r.?	-	-	Ins	intronic	I	108360438	108360447	1	21	425.617	-	-	8	1	1	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	6	2	8	3	25	19	25	19	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743664	1	109307354	G	GT	360	PASS	STXBP3	CCDS790.1	r.?	-	-	Ins	intronic	I	109307354	109307363	1	16	319.213	-	-	8	1	1	STXBP3|CCDS790.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STXBP3|CCDS790.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	3	3	6	5	24	26	24	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743731	1	109483605	TA	T	360	PASS	CLCC1	CCDS41362.1	r.?	-	-	Del	intronic	D	109483605	109483614	1	15	322.825	-	-	8	1	1	CLCC1|CCDS41362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLCC1|CCDS41362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	4	2	6	12	18	12	18	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743880	1	109865159	GT	G	269	PASS	SORT1	CCDS798.1	r.?	-	-	Del	intronic	D	109865159	109865168	1	12	269.021	-	-	8	1	1	SORT1|CCDS798.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORT1|CCDS798.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	3	3	24	23	24	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759743926	1	110012113	GT	G	360	PASS	SYPL2	CCDS41365.1	r.?	-	-	Del	intronic	D	110012113	110012123	1	12	322.825	-	-	9	1	1	SYPL2|CCDS41365.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYPL2|CCDS41365.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	5	2	5	6	15	6	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759744063	1	110555234	GT	G	300	PASS	AHCYL1	CCDS818.1	r.?	-	-	Del	intronic	D	110555234	110555244	1	10	268.419	-	-	9	1	1	AHCYL1|CCDS818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHCYL1|CCDS818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	5	5	25	19	25	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759744094	1	110690235	AT	A	780	PASS	SLC6A17	CCDS30799.1	r.?	-	-	Del	upstream	D	110690235	110690245	1	54	699.454	-	-	9	1	1	SLC6A17|CCDS30799.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SLC6A17|CCDS30799.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	5	8	5	8	28	32	28	32	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759744186	1	110982319	CT	C	300	PASS	-	-	-	-	-	Del	-	D	110982319	110982325	1	10	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	5	1	19	20	19	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759744658	1	113035169	GA	G	480	PASS	WNT2B	ENST00000256640	r.?	-	-	Del	intronic	D	113035169	113035175	1	24	430.433	-	-	5	1	1	WNT2B|ENST00000256640|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	WNT2B|ENST00000256640|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	3	5	3	23	15	23	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759744821	1	113560645	CA	C	300	PASS	-	-	-	-	-	Del	-	D	113560645	113560652	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	3	2	23	17	23	17	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759744950	1	113883309	AT	A	329	PASS	-	-	-	-	-	Del	-	D	113883309	113883319	1	15	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	3	5	26	19	26	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745137	1	114624718	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	114624718	114624726	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	4	2	26	33	26	33	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745343	1	115241097	CT	C	360	PASS	AMPD1	CCDS876.1	r.?	-	-	Del	upstream	D	115241097	115241107	1	16	322.825	-	-	9	1	1	AMPD1|CCDS876.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AMPD1|CCDS876.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	10	16	10	0	0	./.	3	3	6	6	22	22	22	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745352	1	115279326	AG	A	420	PASS	CSDE1	CCDS44197.1	r.?	-	-	Del	intronic	D	115279326	115279333	1	14	376.027	-	-	6	1	1	CSDE1|CCDS44197.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSDE1|CCDS44197.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	1	6	2	7	21	29	21	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745424	1	115546774	CT	C	300	PASS	-	-	-	-	-	Del	-	D	115546774	115546784	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	2	3	3	4	22	21	22	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745436	1	115604160	AT	A	480	PASS	TSPAN2	CCDS881.1	r.?	-	-	Del	intronic	D	115604160	115604170	1	25	429.229	-	-	9	1	1	TSPAN2|CCDS881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSPAN2|CCDS881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	4	6	18	16	18	16	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745456	1	115688561	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	115688561	115688571	1	15	318.611	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	4	2	4	2	22	26	22	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745511	1	115983753	CT	C	420	PASS	-	-	-	-	-	Del	-	D	115983753	115983762	1	20	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	8	23	8	23	0	0	./.	3	4	4	6	20	23	20	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759745806	1	117269894	CA	C	600	PASS	-	-	-	-	-	Del	-	D	117269894	117269901	1	36	538.042	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	5	8	7	31	22	31	22	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759746090	1	118414703	TA	T	300	PASS	GDAP2	CCDS897.1	r.?	-	-	Del	intronic	D	118414703	118414711	1	10	269.021	-	-	7	1	1	GDAP2|CCDS897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDAP2|CCDS897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	1	7	2	30	10	30	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759746366	1	119739816	CG	C	480	PASS	-	-	-	-	-	Del	-	D	119739816	119739822	1	21	429.229	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	6	2	9	2	28	22	28	22	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759746373	1	119772769	CT	C	300	PASS	-	-	-	-	-	Del	-	D	119772769	119772779	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	2	5	21	23	21	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759746427	1	120030018	AT	A	300	PASS	AL121995.1	ENST00000506663	r.?	-	-	Del	intronic	D	120030018	120030028	1	10	269.021	-	-	9	1	1	AL121995.1|ENST00000506663|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL121995.1|ENST00000506663|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	1	5	1	24	21	24	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759746751	1	121251787	CA	C	420	PASS	-	-	-	-	-	Del	-	D	121251787	121251796	1	20	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	4	3	7	5	32	31	32	31	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759748604	1	144023589	TG	T	293	PASS	-	-	-	-	-	Del	-	D	144023589	144023591	1	18	374.823	-	-	1	1	1	-	-	./.	0	0	0	0	26	19	26	19	0	0	./.	2	5	2	6	53	49	53	49	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759748648	1	144527405	TG	T	1080	PASS	AL592284.1	CCDS3072.1	r.?	-	-	Del	intronic	D	144527405	144527407	1	99	966.067	-	-	1	1	1	AL592284.1|CCDS3072.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL592284.1|CCDS3072.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	36	52	36	52	0	0	./.	8	10	11	15	133	113	133	113	11	15	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759748952	1	145006743	TTCTC	T	269	PASS	PDE4DIP	CCDS30827.1	r.?	-	-	Del	intronic	D	145006743	145006750	4	6	269.021	-	-	3	1	1	PDE4DIP|CCDS30827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4DIP|CCDS30827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	36	35	36	35	0	0	./.	0	5	1	6	37	99	37	99	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759749562	1	146649459	CT	C	360	PASS	-	-	-	-	-	Del	-	D	146649459	146649469	1	15	322.223	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	5	2	45	34	45	34	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759749580	1	146691583	A	AT	360	PASS	FMO5	CCDS926.1	r.?	-	-	Ins	intronic	I	146691583	146691590	1	15	318.611	-	-	6	1	1	FMO5|CCDS926.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMO5|CCDS926.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	2	4	3	26	23	26	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759749812	1	147261115	CA	C	600	PASS	-	-	-	-	-	Del	-	D	147261115	147261123	1	35	538.042	-	-	7	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	4	7	4	29	26	29	26	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759749815	1	147276930	TA	T	300	PASS	-	-	-	-	-	Del	-	D	147276930	147276938	1	12	267.215	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	4	4	25	27	25	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759749909	1	147816516	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	147816516	147816525	1	6	264.204	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	0	7	0	42	0	43	0	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759749991	1	148518672	GA	G	290	PASS	-	-	-	-	-	Del	-	D	148518672	148518680	1	30	484.237	-	-	7	1	-	-	-	./.	0	0	0	0	31	32	31	32	0	0	./.	5	4	6	4	94	70	94	70	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759750238	1	148880881	CT	C	259	PASS	-	-	-	-	-	Del	-	D	148880881	148880887	1	50	699.454	-	-	5	1	1	-	-	./.	0	0	0	0	21	27	21	27	0	0	./.	9	4	11	5	159	55	159	55	11	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759750297	1	148938986	TAC	T	319	PASS	-	-	-	-	-	Del	-	D	148938986	148938990	2	28	484.237	-	-	1	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	3	6	4	6	80	53	80	53	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759750753	1	150156851	CA	C	600	PASS	-	-	-	-	-	Del	-	D	150156851	150156860	1	32	537.44	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	7	4	9	27	27	27	27	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759750791	1	150242595	CA	C	600	PASS	APH1A	CCDS41391.1	r.?	-	-	Del	upstream	D	150242595	150242605	1	35	538.042	-	-	9	1	1	APH1A|CCDS41391.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C1orf54|CCDS948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	6	7	7	39	30	39	30	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759750838	1	150306330	AT	A	360	PASS	PRPF3	CCDS951.1	r.?	-	-	Del	intronic	D	150306330	150306339	1	12	322.825	-	-	8	1	1	PRPF3|CCDS951.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRPF3|CCDS951.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	1	5	2	6	22	26	22	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759750876	1	150342265	G	GT	269	PASS	RPRD2	CCDS44216.1	r.?	-	-	Ins	intronic	I	150342265	150342275	1	12	256.98	-	-	9	1	1	RPRD2|CCDS44216.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPRD2|CCDS44216.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	7	2	33	6	33	6	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751137	1	150808185	A	AT	360	PASS	ARNT	CCDS970.1	r.?	-	-	Ins	intronic	I	150808185	150808193	1	12	319.213	-	-	7	1	1	ARNT|CCDS970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARNT|CCDS970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	10	8	0	0	./.	5	1	6	1	27	21	27	22	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751152	1	150841952	C	CA	480	PASS	ARNT	CCDS970.1	r.?	-	-	Ins	intronic	I	150841952	150841960	1	21	425.617	-	-	7	1	1	ARNT|CCDS970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARNT|CCDS970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	11	0	0	./.	2	6	5	8	15	38	15	38	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751154	1	150845443	GA	G	300	PASS	ARNT	CCDS970.1	r.?	-	-	Del	intronic	D	150845443	150845452	1	10	269.021	-	-	8	1	1	ARNT|CCDS970.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARNT|CCDS970.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	4	1	29	27	29	27	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751255	1	151031140	ACC	A	389	PASS	MLLT11	CCDS982.1	r.908_909delCC	c.?	p.?	Del	5'UTR variant	D	151031140	151031147	2	20	376.629	-	-	6	1	1	MLLT11|CCDS982.1|r.908_909delCC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	MLLT11|CCDS982.1|r.908_909delCC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	10	9	10	9	0	0	./.	4	3	4	4	28	30	28	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751284	1	151078763	GA	G	540	PASS	GABPB2	CCDS983.1	r.?	-	-	Del	intronic	D	151078763	151078773	1	28	479.421	-	-	9	1	1	GABPB2|CCDS983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABPB2|CCDS983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	3	8	7	41	23	41	23	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751451	1	151375970	G	GT	540	PASS	POGZ	CCDS997.1	r.5855_5856insa	c.?	p.?	Ins	3'UTR variant	I	151375970	151375977	1	24	478.819	-	-	6	1	1	POGZ|CCDS997.1|r.5855_5856insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	POGZ|CCDS997.1|r.5855_5856insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	17	14	17	14	0	0	./.	7	2	7	3	50	31	51	33	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751502	1	151492753	GC	G	360	PASS	CGN	CCDS999.1	r.?	-	-	Del	intronic	D	151492753	151492761	1	15	321.621	-	-	7	1	1	CGN|CCDS999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CGN|CCDS999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	4	2	5	2	26	19	26	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751512	1	151515961	CT	C	300	PASS	CGN	CCDS999.1	r.?	-	-	Del	downstream	D	151515961	151515967	1	12	269.021	-	-	5	1	1	CGN|CCDS999.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TUFT1|CCDS1000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	5	2	44	23	44	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751550	1	151605939	A	AT	480	PASS	SNX27	CCDS1001.1	r.?	-	-	Ins	intronic	I	151605939	151605946	1	24	425.617	-	-	6	1	1	SNX27|CCDS1001.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNX27|CCDS1001.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	5	3	5	7	32	35	32	35	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751564	1	151634966	CT	C	540	PASS	SNX27	CCDS1001.1	r.?	-	-	Del	intronic	D	151634966	151634976	1	24	480.625	-	-	9	1	1	SNX27|CCDS1001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX27|CCDS1001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	7	2	7	22	26	22	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751579	1	151699601	CA	C	780	PASS	C1orf230	ENST00000326413	r.?	-	-	Del	intronic	D	151699601	151699611	1	56	691.025	-	-	9	1	1	C1orf230|ENST00000326413|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf230|ENST00000326413|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	6	8	7	35	34	35	34	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751707	1	152023717	A	ATG	300	PASS	-	-	-	-	-	Ins	-	I	152023717	152023729	2	12	263	-	-	5	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	4	3	38	28	38	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759751864	1	152623448	TA	T	300	PASS	-	-	-	-	-	Del	-	D	152623448	152623455	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	19	23	19	23	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752087	1	153481468	CA	C	420	PASS	-	-	-	-	-	Del	-	D	153481468	153481478	1	18	375.425	-	-	9	1	-	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	5	3	6	24	33	24	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752094	1	153520780	TC	T	300	PASS	S100A3	CCDS1043.1	r.?	-	-	Del	intronic	D	153520780	153520787	1	10	269.021	-	-	6	1	1	S100A3|CCDS1043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	S100A3|CCDS1043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	4	3	26	12	26	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752098	1	153528506	G	GA	478	PASS	-	-	-	-	-	Ins	-	I	153528506	153528516	1	30	476.411	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	4	5	4	31	34	31	34	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752185	1	153700589	T	TC	660	PASS	INTS3	CCDS1052.1	r.47_48insc	c.?	p.?	Ins	5'UTR variant	I	153700589	153700594	1	36	571.376	-	-	4	1	1	INTS3|CCDS1052.1|r.47_48insc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	INTS3|CCDS1052.1|r.47_48insc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	6	9	6	9	0	0	./.	8	3	9	4	27	23	28	23	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752242	1	153816690	GA	G	269	PASS	GATAD2B	CCDS1054.1	r.?	-	-	Del	intronic	D	153816690	153816700	1	12	269.021	-	-	9	1	1	GATAD2B|CCDS1054.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GATAD2B|CCDS1054.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	3	3	17	42	17	42	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752291	1	153916852	G	GC	300	PASS	DENND4B	CCDS44228.1	r.399_400insg	c.?	p.?	Ins	5'UTR variant	I	153916852	153916861	1	12	266.01	-	-	8	1	1	DENND4B|CCDS44228.1|r.399_400insg|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	DENND4B|CCDS44228.1|r.399_400insg|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	8	17	8	17	0	0	./.	2	3	4	3	33	37	33	39	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752313	1	153966378	AT	A	329	PASS	NUP210L	CCDS41399.1	r.?	-	-	Del	intronic	D	153966378	153966388	1	16	320.417	-	-	9	1	1	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	3	3	3	3	29	33	29	33	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752318	1	153973259	TG	T	540	PASS	NUP210L	CCDS41399.1	r.?	-	-	Del	intronic	D	153973259	153973266	1	28	484.237	-	-	6	1	1	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	3	6	4	5	33	41	33	41	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752399	1	154108497	TA	T	360	PASS	NUP210L	CCDS41399.1	r.?	-	-	Del	intronic	D	154108497	154108499	1	16	322.825	-	-	1	1	1	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	3	3	19	26	19	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752431	1	154172347	G	GT	360	PASS	C1orf189	CCDS30876.1	r.?	-	-	Ins	intronic	I	154172347	154172356	1	15	319.213	-	-	8	1	1	C1orf189|CCDS30876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf189|CCDS30876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	4	4	23	42	23	42	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752439	1	154187060	TA	T	420	PASS	C1orf43	CCDS41404.1	r.?	-	-	Del	intronic	D	154187060	154187068	1	20	376.629	-	-	7	1	1	C1orf43|CCDS41404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf43|CCDS41404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	3	4	4	5	38	34	38	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752537	1	154381244	CAA	C	480	PASS	IL6R	CCDS1067.1	r.?	-	-	Del	intronic	D	154381244	154381249	2	21	429.229	-	-	4	1	1	IL6R|CCDS1067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL6R|CCDS1067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	6	5	8	32	17	32	17	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752559	1	154427396	C	CT	360	PASS	IL6R	CCDS1067.1	r.?	-	-	Ins	intronic	I	154427396	154427406	1	16	319.213	-	-	9	1	1	IL6R|CCDS1067.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL6R|CCDS1067.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	5	4	43	30	44	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752659	1	154621950	TA	T	420	PASS	-	-	-	-	-	Del	-	D	154621950	154621960	1	20	376.629	-	-	9	1	1	-	-	./.	0	0	0	0	16	2	16	2	0	0	./.	4	3	4	4	16	29	16	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752673	1	154660485	C	CCT	420	PASS	-	-	-	-	-	Ins	-	I	154660485	154660498	2	18	367.598	-	-	6	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	2	5	4	6	22	37	22	37	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752706	1	154749414	AC	A	420	PASS	KCNN3	CCDS30880.1	r.?	-	-	Del	intronic	D	154749414	154749421	1	20	376.629	-	-	6	1	1	KCNN3|CCDS30880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNN3|CCDS30880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	4	7	6	24	27	24	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752718	1	154784501	GC	G	365	PASS	KCNN3	CCDS30880.1	r.?	-	-	Del	intronic	D	154784501	154784508	1	18	376.629	-	-	6	1	1	KCNN3|CCDS30880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNN3|CCDS30880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	5	3	5	25	35	25	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752796	1	155053500	T	TC	420	PASS	EFNA3	CCDS1090.1	r.?	-	-	Ins	intronic	I	155053500	155053506	1	18	356.159	-	-	5	1	1	EFNA3|CCDS1090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EFNA3|CCDS1090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	5	2	8	3	46	39	46	40	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752861	1	155210259	G	GA	329	PASS	GBA	CCDS1102.1	r.?	-	-	Ins	intronic	I	155210259	155210268	1	15	316.804	-	-	8	1	1	GBA|CCDS1102.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GBA|CCDS1102.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	4	6	4	0	0	./.	4	2	8	2	33	32	33	32	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752887	1	155304572	T	TA	300	PASS	ASH1L	CCDS1113.2	r.?	-	-	Ins	downstream	I	155304572	155304581	1	10	264.806	-	-	8	1	1	ASH1L|CCDS1113.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ASH1L|CCDS1113.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	12	13	12	0	0	./.	4	1	5	1	53	21	53	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759752954	1	155418136	TTTG	T	269	PASS	ASH1L	CCDS1113.2	r.?	-	-	Del	intronic	D	155418136	155418162	3	12	267.817	-	-	8	1	-	ASH1L|CCDS1113.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASH1L|CCDS1113.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	3	3	36	26	36	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753055	1	155635069	A	AT	300	PASS	YY1AP1	CCDS1116.1	r.?	-	-	Ins	intronic	I	155635069	155635078	1	10	264.806	-	-	8	1	1	YY1AP1|CCDS1116.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	YY1AP1|CCDS1116.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	0	5	21	33	21	33	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753080	1	155688319	CA	C	300	PASS	DAP3	CCDS1120.1	r.?	-	-	Del	intronic	D	155688319	155688329	1	6	268.419	-	-	9	1	1	DAP3|CCDS1120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAP3|CCDS1120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	0	5	0	6	9	39	9	39	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753088	1	155698985	GTC	G	360	PASS	DAP3	CCDS1120.1	r.?	-	-	Del	intronic	D	155698985	155698992	2	15	322.825	-	-	3	1	1	DAP3|CCDS1120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAP3|CCDS1120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	4	2	36	25	36	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753186	1	155851481	G	GT	420	PASS	SYT11	CCDS1122.1	r.1731_1732insu	c.?	p.?	Ins	3'UTR variant	I	155851481	155851491	1	20	368.802	-	-	9	1	1	SYT11|CCDS1122.1|r.1731_1732insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SYT11|CCDS1122.1|r.1731_1732insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	6	14	6	14	0	0	./.	4	3	4	5	21	35	21	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753193	1	155862972	CT	C	420	PASS	RIT1	CCDS1123.1	r.?	-	-	Del	downstream	D	155862972	155862981	1	18	376.629	-	-	8	1	1	RIT1|CCDS1123.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RIT1|CCDS1123.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	5	8	5	0	0	./.	5	2	7	3	34	28	34	28	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753201	1	155876030	G	GA	480	PASS	RIT1	CCDS1123.1	r.?	-	-	Ins	intronic	I	155876030	155876040	1	21	424.413	-	-	9	1	1	RIT1|CCDS1123.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIT1|CCDS1123.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	25	0	0	./.	6	2	8	4	31	28	31	29	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753235	1	155942667	AT	A	420	PASS	ARHGEF2	CCDS1125.1	r.?	-	-	Del	intronic	D	155942667	155942676	1	14	376.629	-	-	8	1	1	ARHGEF2|CCDS1125.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ARHGEF2|CCDS1125.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	6	1	9	2	37	21	37	21	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753304	1	156124051	CA	C	540	PASS	SEMA4A	CCDS1132.1	r.?	-	-	Del	intronic	D	156124051	156124059	1	28	484.237	-	-	7	1	1	SEMA4A|CCDS1132.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEMA4A|CCDS1132.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	3	6	3	31	30	31	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753342	1	156197003	AT	A	300	PASS	PMF1	CCDS30886.1	r.?	-	-	Del	intronic	D	156197003	156197013	1	6	269.021	-	-	9	1	1	PMF1|CCDS30886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PMF1|CCDS30886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	10	3	14	0	0	./.	0	5	0	6	3	30	3	32	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753381	1	156277433	TA	T	300	PASS	CCT3	CCDS44244.1	r.?	-	-	Del	downstream	D	156277433	156277442	1	6	267.817	-	-	8	1	1	CCT3|CCDS44244.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CCT3|CCDS44244.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	8	7	8	0	0	./.	0	5	1	6	20	28	20	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753388	1	156284534	AC	A	269	PASS	CCT3	CCDS44244.1	r.?	-	-	Del	intronic	D	156284534	156284537	1	10	269.021	-	-	2	1	1	CCT3|CCDS44244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCT3|CCDS44244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	4	1	4	2	33	26	33	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753461	1	156434240	TG	T	360	PASS	MEF2D	CCDS1143.1	r.5243delC	c.?	p.?	Del	3'UTR variant	D	156434240	156434250	1	12	322.825	-	-	9	1	1	MEF2D|CCDS1143.1|r.5243delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MEF2D|CCDS1143.1|r.5243delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	3	8	3	8	0	0	./.	5	1	5	1	22	8	22	8	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753579	1	156694022	AG	A	300	PASS	ISG20L2	CCDS1153.1	r.1648delC	c.865delC	p.L289fs*15	Del	frameshift	D	156694022	156694031	1	10	267.215	-	-	8	1	1	ISG20L2|CCDS1153.1|r.1648delC|c.865delC|p.L289fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ISG20L2|CCDS1153.1|r.1648delC|c.865delC|p.L289fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	5	6	5	0	0	./.	1	4	3	5	24	22	24	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753619	1	156778958	CCTT	C	269	PASS	SH2D2A	CCDS1159.1	r.?	-	-	Del	intronic	D	156778958	156778965	3	12	269.021	-	-	2	1	1	SH2D2A|CCDS1159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH2D2A|CCDS1159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	4	5	35	22	35	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753820	1	157394155	GT	G	360	PASS	-	-	-	-	-	Del	-	D	157394155	157394164	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	2	4	4	31	35	31	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759753881	1	157631886	GT	G	360	PASS	-	-	-	-	-	Del	-	D	157631886	157631896	1	12	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	1	5	1	7	26	27	26	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754069	1	158222926	CT	C	389	PASS	CD1A	CCDS1174.1	r.?	-	-	Del	upstream	D	158222926	158222936	1	20	376.629	-	-	9	1	1	CD1A|CCDS1174.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CD1A|CCDS1174.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	6	6	6	0	0	./.	4	3	5	4	25	24	25	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754253	1	158804868	TA	T	540	PASS	MNDA	CCDS1177.1	r.?	-	-	Del	intronic	D	158804868	158804875	1	24	484.237	-	-	6	1	1	MNDA|CCDS1177.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MNDA|CCDS1177.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	23	8	23	0	0	./.	7	2	9	4	21	26	21	26	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754302	1	158906187	CA	C	293	PASS	PYHIN1	CCDS1178.1	r.?	-	-	Del	intronic	D	158906187	158906196	1	10	269.021	-	-	8	1	1	PYHIN1|CCDS1178.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PYHIN1|CCDS1178.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	5	1	31	6	31	6	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754358	1	159057668	CT	C	329	PASS	AIM2	ENST00000411768	r.?	-	-	Del	intronic	D	159057668	159057676	1	16	322.825	-	-	7	1	1	AIM2|ENST00000411768|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AIM2|ENST00000411768|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	4	3	37	17	37	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754413	1	159307873	AT	A	480	PASS	-	-	-	-	-	Del	-	D	159307873	159307883	1	25	425.015	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	4	7	5	29	24	29	24	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754421	1	159344988	GA	G	360	PASS	OR10J1	ENST00000328408	r.?	-	-	Del	intronic	D	159344988	159344998	1	12	322.825	-	-	9	1	1	OR10J1|ENST00000328408|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OR10J1|ENST00000328408|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	5	1	6	1	34	20	34	20	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754467	1	159492654	AT	A	420	PASS	-	-	-	-	-	Del	-	D	159492654	159492662	1	18	376.629	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	2	7	4	30	25	30	25	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754484	1	159571007	GT	G	360	PASS	-	-	-	-	-	Del	-	D	159571007	159571016	1	16	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	3	4	4	32	22	32	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754492	1	159618887	CA	C	360	PASS	-	-	-	-	-	Del	-	D	159618887	159618897	1	15	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	4	2	5	25	13	25	13	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754574	1	159899921	GAGA	G	389	PASS	IGSF9	CCDS44254.1	r.?	-	-	Del	intronic	D	159899921	159899927	3	18	376.027	-	-	1	1	1	IGSF9|CCDS44254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGSF9|CCDS44254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	5	3	7	24	34	24	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754648	1	160127510	CAG	C	300	PASS	ATP1A4	CCDS1197.1	r.?	-	-	Del	intronic	D	160127510	160127523	2	12	269.021	-	-	6	1	1	ATP1A4|CCDS1197.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP1A4|CCDS1197.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	2	3	2	3	30	25	30	25	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754664	1	160184618	TAGG	T	449	PASS	PEA15	CCDS1199.1	r.1924_1926delAGG	c.?	p.?	Del	3'UTR variant	D	160184618	160184624	3	21	428.627	-	-	1	1	1	PEA15|CCDS1199.1|r.1924_1926delAGG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PEA15|CCDS1199.1|r.1924_1926delAGG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	5	9	5	0	0	./.	2	6	2	6	20	28	20	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754730	1	160327877	C	CA	300	PASS	NCSTN	CCDS1203.1	r.?	-	-	Ins	intronic	I	160327877	160327884	1	6	266.01	-	-	6	1	1	NCSTN|CCDS1203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCSTN|CCDS1203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	0	5	0	7	21	37	21	37	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754731	1	160332510	AG	A	300	PASS	NCSTN	CCDS1203.1	r.?	-	-	Del	downstream	D	160332510	160332517	1	10	267.817	-	-	6	1	1	NCSTN|CCDS1203.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NHLH1|CCDS1204.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	3	9	3	9	0	0	./.	1	4	1	4	23	25	23	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754882	1	160783792	AG	A	720	PASS	LY9	CCDS30916.1	r.?	-	-	Del	intronic	D	160783792	160783798	1	40	645.048	-	-	5	1	1	LY9|CCDS30916.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LY9|CCDS30916.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	9	3	10	4	41	35	41	35	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754926	1	160884515	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	160884515	160884522	1	24	478.819	-	-	6	1	1	-	-	./.	0	0	0	0	5	24	5	25	0	0	./.	2	7	4	10	35	32	35	33	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754941	1	160907120	C	CTT	389	PASS	-	-	-	-	-	Ins	-	I	160907120	160907129	2	18	368.2	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	2	5	5	7	29	44	31	44	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759754971	1	160951745	GA	G	300	PASS	-	-	-	-	-	Del	-	D	160951745	160951755	1	12	269.021	-	-	9	1	-	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	2	4	3	18	33	18	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755028	1	161061526	A	AC	420	PASS	PVRL4	CCDS1216.1	r.?	-	-	Ins	upstream	I	161061526	161061531	1	20	372.415	-	-	4	1	1	PVRL4|CCDS1216.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PVRL4|CCDS1216.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	8	7	8	0	0	./.	4	3	5	4	35	24	35	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755069	1	161174015	A	AT	300	PASS	NDUFS2	CCDS1224.1	r.?	-	-	Ins	intronic	I	161174015	161174024	1	10	266.01	-	-	8	1	1	NDUFS2|CCDS1224.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NDUFS2|CCDS1224.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	4	1	4	1	38	25	39	25	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755090	1	161212090	GA	G	420	PASS	NR1I3	CCDS1228.1	r.?	-	-	Del	upstream	D	161212090	161212100	1	14	376.629	-	-	9	1	1	NR1I3|CCDS1228.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NR1I3|CCDS1228.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	9	11	9	0	0	./.	1	6	3	7	32	27	32	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755107	1	161248213	C	CT	480	PASS	PCP4L1	ENST00000504449	r.?	-	-	Ins	intronic	I	161248213	161248222	1	24	425.617	-	-	8	1	1	PCP4L1|ENST00000504449|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCP4L1|ENST00000504449|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	16	0	0	./.	3	5	5	7	26	32	26	32	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755149	1	161353166	CT	C	420	PASS	-	-	-	-	-	Del	-	D	161353166	161353170	1	18	376.629	-	-	3	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	5	2	6	4	39	28	39	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755172	1	161400294	TA	T	360	PASS	-	-	-	-	-	Del	-	D	161400294	161400303	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	5	2	28	34	28	34	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755360	1	162035358	ATTAC	A	358	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Del	upstream	D	162035358	162035365	4	8	376.629	-	-	1	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	12	18	12	0	0	./.	0	7	1	8	13	34	13	34	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755389	1	162100618	T	TA	360	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Ins	intronic	I	162100618	162100625	1	15	319.213	-	-	6	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	10	0	0	./.	4	2	5	3	40	36	40	36	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755399	1	162133010	AT	A	300	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Del	intronic	D	162133010	162133020	1	12	269.021	-	-	9	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	2	4	2	29	25	29	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755454	1	162324763	CT	C	480	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Del	intronic	D	162324763	162324771	1	24	430.433	-	-	7	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	5	3	7	4	36	23	36	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755657	1	162757469	AT	A	267	PASS	HSD17B7	CCDS1242.1	r.?	-	-	Del	upstream	D	162757469	162757477	1	15	322.825	-	-	7	1	1	HSD17B7|CCDS1242.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HSD17B7|CCDS1242.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	0	12	0	12	0	0	./.	2	4	2	4	13	20	13	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755665	1	162766659	G	GT	392	PASS	HSD17B7	CCDS1242.1	r.?	-	-	Ins	intronic	I	162766659	162766666	1	20	372.415	-	-	6	1	1	HSD17B7|CCDS1242.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HSD17B7|CCDS1242.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	5	4	35	33	35	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755769	1	163031670	CT	C	300	PASS	-	-	-	-	-	Del	-	D	163031670	163031678	1	6	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	0	5	1	5	21	30	21	30	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755843	1	163265701	CT	C	569	PASS	-	-	-	-	-	Del	-	D	163265701	163265711	1	32	538.042	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	7	6	7	36	31	36	31	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755953	1	163593062	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	163593062	163593072	1	12	263.602	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	6	5	47	32	47	32	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759755989	1	163842716	AT	A	360	PASS	-	-	-	-	-	Del	-	D	163842716	163842718	1	12	321.019	-	-	1	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	5	1	5	3	23	14	23	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756107	1	164283080	TG	T	300	PASS	-	-	-	-	-	Del	-	D	164283080	164283089	1	12	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	4	3	23	26	23	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756110	1	164288331	AT	A	269	PASS	-	-	-	-	-	Del	-	D	164288331	164288338	1	10	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	4	1	7	19	28	19	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756137	1	164378849	AT	A	300	PASS	-	-	-	-	-	Del	-	D	164378849	164378855	1	12	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	3	2	4	3	20	27	20	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756208	1	164561259	ATG	A	420	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164561259	164561264	2	18	376.629	-	-	2	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	2	5	2	6	22	37	22	37	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756261	1	164679643	CT	C	300	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164679643	164679652	1	12	269.021	-	-	8	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	3	2	4	3	27	25	27	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756263	1	164683361	C	CT	360	PASS	PBX1	CCDS1246.1	r.?	-	-	Ins	intronic	I	164683361	164683368	1	15	319.213	-	-	6	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	15	0	0	./.	4	2	5	4	29	36	29	38	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756273	1	164723925	CGT	C	360	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164723925	164723941	2	7	322.825	-	-	7	1	-	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	0	6	3	8	20	33	20	33	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756432	1	165231984	G	GA	300	PASS	LMX1A	CCDS1247.1	r.?	-	-	Ins	intronic	I	165231984	165231994	1	6	262.398	-	-	9	1	1	LMX1A|CCDS1247.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMX1A|CCDS1247.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	0	5	0	8	17	41	18	41	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756611	1	165698728	AT	A	426	PASS	TMCO1	CCDS1251.1	r.?	-	-	Del	intronic	D	165698728	165698737	1	21	430.433	-	-	8	1	1	TMCO1|CCDS1251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMCO1|CCDS1251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	6	2	8	4	36	19	36	19	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756619	1	165705303	C	CA	420	PASS	TMCO1	CCDS1251.1	r.?	-	-	Ins	intronic	I	165705303	165705312	1	20	371.813	-	-	8	1	1	TMCO1|CCDS1251.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMCO1|CCDS1251.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	3	5	4	28	28	28	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756637	1	165722885	CA	C	360	PASS	TMCO1	CCDS1251.1	r.?	-	-	Del	intronic	D	165722885	165722895	1	15	322.825	-	-	9	1	1	TMCO1|CCDS1251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMCO1|CCDS1251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	2	4	2	6	17	32	17	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756659	1	165793300	GCAGA	G	540	PASS	UCK2	CCDS1252.1	r.?	-	-	Del	upstream	D	165793300	165793307	4	30	484.237	-	-	1	1	1	UCK2|CCDS1252.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	UCK2|CCDS1252.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	6	11	6	0	0	./.	4	5	4	5	26	30	26	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756708	1	165916383	TA	T	360	PASS	-	-	-	-	-	Del	-	D	165916383	165916392	1	12	320.417	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	1	5	1	32	14	32	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756831	1	166375507	CT	C	300	PASS	-	-	-	-	-	Del	-	D	166375507	166375517	1	6	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	0	7	1	33	21	33	21	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756922	1	166668055	GA	G	300	PASS	-	-	-	-	-	Del	-	D	166668055	166668064	1	12	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	2	5	2	25	15	25	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756959	1	166754540	CT	C	314	PASS	-	-	-	-	-	Del	-	D	166754540	166754549	1	16	321.621	-	-	8	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	3	3	4	37	38	37	38	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759756992	1	166855254	CT	C	300	PASS	-	-	-	-	-	Del	-	D	166855254	166855264	1	12	268.419	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	3	5	33	31	33	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757041	1	167099097	GA	G	300	PASS	DUSP27	CCDS30932.1	r.?	-	-	Del	downstream	D	167099097	167099103	1	12	269.021	-	-	5	1	1	DUSP27|CCDS30932.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DUSP27|CCDS30932.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	5	3	31	27	31	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757074	1	167170951	TA	T	360	PASS	-	-	-	-	-	Del	-	D	167170951	167170960	1	15	322.223	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	4	3	4	27	24	27	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757114	1	167250766	CA	C	300	PASS	POU2F1	CCDS1259.1	r.?	-	-	Del	intronic	D	167250766	167250774	1	10	268.419	-	-	7	1	1	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	6	2	37	19	37	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757183	1	167438463	GC	G	360	PASS	CD247	CCDS1260.1	r.?	-	-	Del	intronic	D	167438463	167438471	1	16	322.825	-	-	7	1	1	CD247|CCDS1260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD247|CCDS1260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	3	4	32	28	32	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757205	1	167499963	CA	C	360	PASS	-	-	-	-	-	Del	-	D	167499963	167499972	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	3	4	20	31	20	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757228	1	167584440	CA	C	600	PASS	-	-	-	-	-	Del	-	D	167584440	167584450	1	27	535.031	-	-	9	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	2	8	4	8	25	36	25	36	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757262	1	167651193	TC	T	360	PASS	RCSD1	CCDS1263.1	r.?	-	-	Del	intronic	D	167651193	167651199	1	12	321.621	-	-	5	1	1	RCSD1|CCDS1263.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RCSD1|CCDS1263.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	1	5	3	5	30	22	30	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757354	1	167820904	CA	C	277	PASS	ADCY10	CCDS1265.1	r.?	-	-	Del	intronic	D	167820904	167820913	1	12	269.021	-	-	8	1	1	ADCY10|CCDS1265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY10|CCDS1265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	3	4	15	25	15	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757384	1	167910806	GT	G	300	PASS	DCAF6	CCDS1267.2	r.?	-	-	Del	intronic	D	167910806	167910815	1	10	268.419	-	-	8	1	1	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	1	4	1	5	24	19	24	19	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757534	1	168361948	GGA	G	420	PASS	-	-	-	-	-	Del	-	D	168361948	168361959	2	14	376.629	-	-	5	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	6	2	6	39	40	39	40	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757571	1	168492843	AT	A	420	PASS	-	-	-	-	-	Del	-	D	168492843	168492846	1	18	376.629	-	-	2	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	5	2	8	6	41	6	41	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757593	1	168585936	GA	G	420	PASS	-	-	-	-	-	Del	-	D	168585936	168585945	1	20	375.425	-	-	8	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	3	4	4	6	20	28	20	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757656	1	168778302	AT	A	660	PASS	-	-	-	-	-	Del	-	D	168778302	168778309	1	42	591.846	-	-	6	1	1	-	-	./.	0	0	0	0	20	8	20	8	0	0	./.	5	6	5	7	37	33	37	33	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757689	1	168904721	AT	A	540	PASS	-	-	-	-	-	Del	-	D	168904721	168904731	1	28	484.237	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	6	3	8	4	20	29	20	29	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759757835	1	169369845	AAT	A	540	PASS	BLZF1	CCDS1278.1	r.?	-	-	Del	downstream	D	169369845	169369850	2	30	484.237	-	-	2	1	1	BLZF1|CCDS1278.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C1orf114|CCDS1279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	24	8	24	0	0	./.	5	4	6	4	22	29	22	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758024	1	169879263	TA	T	300	PASS	-	-	-	-	-	Del	-	D	169879263	169879271	1	10	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	4	1	4	6	36	21	36	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758030	1	169881909	G	GT	389	PASS	-	-	-	-	-	Ins	-	I	169881909	169881918	1	18	368.2	-	-	8	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	5	2	9	2	37	27	39	29	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758080	1	170116610	C	CT	360	PASS	METTL11B	CCDS44275.1	r.?	-	-	Ins	intronic	I	170116610	170116619	1	7	319.213	-	-	8	1	1	METTL11B|CCDS44275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	METTL11B|CCDS44275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	6	0	7	2	30	34	31	34	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758154	1	170335656	AT	A	300	PASS	-	-	-	-	-	Del	-	D	170335656	170335666	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	4	1	4	2	27	19	27	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758184	1	170421342	C	CGT	300	PASS	-	-	-	-	-	Ins	-	I	170421342	170421361	2	10	263	-	-	9	1	1	-	-	./.	0	0	0	0	19	8	20	8	0	0	./.	1	4	2	4	43	25	44	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758190	1	170443569	CA	C	480	PASS	-	-	-	-	-	Del	-	D	170443569	170443576	1	21	429.831	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	2	6	2	25	25	25	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758218	1	170514681	CA	C	420	PASS	GORAB	CCDS1289.1	r.?	-	-	Del	intronic	D	170514681	170514689	1	14	376.629	-	-	7	1	1	GORAB|CCDS1289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GORAB|ENST00000367762|r.1451delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	9	14	9	0	0	./.	6	1	6	1	25	27	25	27	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758224	1	170532199	ATCT	A	269	PASS	-	-	-	-	-	Del	-	D	170532199	170532211	3	12	269.021	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	4	3	29	25	29	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758227	1	170533774	CA	C	360	PASS	-	-	-	-	-	Del	-	D	170533774	170533782	1	16	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	5	3	26	28	26	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758276	1	170647431	AT	A	420	PASS	PRRX1	CCDS1291.1	r.?	-	-	Del	intronic	D	170647431	170647439	1	18	376.629	-	-	7	1	1	PRRX1|CCDS1291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRRX1|CCDS1291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	5	3	5	28	18	28	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758530	1	171522234	CT	C	290	PASS	BAT2L2	ENST00000392078	r.?	-	-	Del	intronic	D	171522234	171522242	1	12	269.021	-	-	7	1	1	BAT2L2|ENST00000392078|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAT2L2|ENST00000392078|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	6	2	24	33	24	33	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758649	1	171789392	TG	T	420	PASS	-	-	-	-	-	Del	-	D	171789392	171789399	1	14	376.629	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	1	6	1	40	20	40	20	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758661	1	171813637	G	GT	420	PASS	DNM3	CCDS44276.1	r.?	-	-	Ins	intronic	I	171813637	171813645	1	20	371.211	-	-	7	1	1	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	4	4	4	31	30	31	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758672	1	171839633	CA	C	300	PASS	DNM3	CCDS44276.1	r.?	-	-	Del	intronic	D	171839633	171839643	1	6	269.021	-	-	9	1	-	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	0	8	0	45	10	45	10	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758806	1	172262954	GA	G	540	PASS	DNM3	CCDS44276.1	r.?	-	-	Del	intronic	D	172262954	172262964	1	18	484.237	-	-	9	1	1	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	8	1	8	1	38	33	38	33	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758821	1	172312947	CT	C	420	PASS	DNM3	CCDS44276.1	r.?	-	-	Del	intronic	D	172312947	172312956	1	20	376.629	-	-	8	1	1	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	3	4	6	4	36	30	36	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759758976	1	172765279	CT	C	660	PASS	-	-	-	-	-	Del	-	D	172765279	172765288	1	42	587.631	-	-	8	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	6	5	6	5	18	35	18	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759036	1	172999343	CT	C	300	PASS	-	-	-	-	-	Del	-	D	172999343	172999353	1	12	264.806	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	3	3	30	27	30	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759090	1	173235459	CAT	C	300	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173235459	173235473	2	10	269.021	-	-	6	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	5	1	28	26	28	26	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759153	1	173449289	TA	T	420	PASS	PRDX6	CCDS1307.1	r.?	-	-	Del	intronic	D	173449289	173449299	1	20	376.629	-	-	9	1	1	PRDX6|CCDS1307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDX6|CCDS1307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	5	5	26	40	26	40	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759174	1	173536554	CCTT	C	298	PASS	SLC9A11	CCDS1308.1	r.?	-	-	Del	intronic	D	173536554	173536561	3	16	322.825	-	-	2	1	1	SLC9A11|CCDS1308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A11|CCDS1308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	4	4	31	31	31	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759211	1	173660159	TC	T	420	PASS	-	-	-	-	-	Del	-	D	173660159	173660167	1	20	376.629	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	3	5	4	24	34	24	34	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759220	1	173701457	T	TA	360	PASS	KLHL20	CCDS1310.1	r.?	-	-	Ins	intronic	I	173701457	173701466	1	15	319.213	-	-	8	1	1	KLHL20|CCDS1310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLHL20|CCDS1310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	4	4	24	27	24	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759270	1	173809377	CT	C	300	PASS	DARS2	CCDS1311.1	r.?	-	-	Del	intronic	D	173809377	173809385	1	12	268.419	-	-	7	1	1	DARS2|CCDS1311.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DARS2|CCDS1311.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	3	2	6	4	27	38	27	38	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759553	1	174567863	C	CT	269	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Ins	intronic	I	174567863	174567871	1	12	266.01	-	-	7	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	14	0	0	./.	3	2	3	2	24	15	24	15	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759835	1	175385980	TA	T	329	PASS	TNR	CCDS1318.1	r.?	-	-	Del	intronic	D	175385980	175385986	1	15	322.223	-	-	5	1	1	TNR|CCDS1318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TNR|CCDS1318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	2	5	3	34	27	34	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759839	1	175387248	CA	C	600	PASS	TNR	CCDS1318.1	r.?	-	-	Del	intronic	D	175387248	175387253	1	36	536.837	-	-	4	1	1	TNR|CCDS1318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TNR|CCDS1318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	5	5	8	6	28	27	28	27	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759922	1	175786323	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	175786323	175786332	1	7	310.784	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	0	7	0	30	15	30	16	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759966	1	175944553	CT	C	360	PASS	RFWD2	CCDS30944.1	r.?	-	-	Del	intronic	D	175944553	175944562	1	15	322.825	-	-	8	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	4	2	33	27	33	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759759994	1	176035660	AT	A	480	PASS	RFWD2	CCDS30944.1	r.?	-	-	Del	intronic	D	176035660	176035667	1	25	430.433	-	-	6	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	4	4	4	42	24	42	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760136	1	176412236	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	176412236	176412241	2	12	269.021	-	-	2	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	2	3	3	6	19	29	19	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760202	1	176634724	AT	A	540	PASS	PAPPA2	CCDS41438.1	r.?	-	-	Del	intronic	D	176634724	176634733	1	28	484.237	-	-	8	1	1	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	6	3	8	3	32	31	32	31	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760224	1	176694926	CT	C	600	PASS	PAPPA2	CCDS41438.1	r.?	-	-	Del	intronic	D	176694926	176694935	1	35	535.633	-	-	8	1	1	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	6	4	6	7	34	26	34	26	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760269	1	176828225	CA	C	660	PASS	ASTN1	CCDS1319.1	r.?	-	-	Del	downstream	D	176828225	176828231	1	42	591.846	-	-	5	1	1	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ASTN1|ENST00000367657|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	6	5	7	6	32	41	32	41	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760318	1	177108307	TA	T	420	PASS	ASTN1	CCDS1319.1	r.?	-	-	Del	intronic	D	177108307	177108316	1	20	376.629	-	-	8	1	1	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	3	4	3	5	20	34	20	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760358	1	177283702	CA	C	480	PASS	-	-	-	-	-	Del	-	D	177283702	177283712	1	24	429.831	-	-	9	1	1	-	-	./.	0	0	0	0	6	24	6	24	0	0	./.	5	3	5	4	24	40	24	40	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760386	1	177429649	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	177429649	177429657	1	24	425.617	-	-	7	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	5	3	5	4	32	37	32	37	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760473	1	177861966	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	177861966	177861973	1	10	265.408	-	-	6	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	4	2	7	47	39	47	39	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760494	1	177937122	ACT	A	360	PASS	SEC16B	CCDS44281.1	r.83_84delAG	c.?	p.?	Del	5'UTR variant	D	177937122	177937129	2	15	322.825	-	-	3	1	1	SEC16B|CCDS44281.1|r.83_84delAG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	SEC16B|CCDS44281.1|r.83_84delAG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	6	2	21	37	21	37	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760562	1	178135101	TC	T	360	PASS	RASAL2	CCDS1321.1	r.?	-	-	Del	intronic	D	178135101	178135109	1	12	322.825	-	-	7	1	1	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	1	5	1	7	35	41	35	41	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760602	1	178255553	CT	C	300	PASS	RASAL2	CCDS1321.1	r.?	-	-	Del	intronic	D	178255553	178255563	1	10	268.419	-	-	9	1	1	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	6	3	29	17	29	17	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760611	1	178272151	CA	C	389	PASS	RASAL2	CCDS1321.1	r.?	-	-	Del	intronic	D	178272151	178272161	1	18	376.629	-	-	9	1	1	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	5	2	7	25	25	25	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760794	1	178786187	AT	A	298	PASS	RALGPS2	CCDS1325.1	r.?	-	-	Del	intronic	D	178786187	178786196	1	12	322.825	-	-	8	1	1	RALGPS2|CCDS1325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGPS2|CCDS1325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	1	5	2	5	14	22	14	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760863	1	178976476	CA	C	480	PASS	-	-	-	-	-	Del	-	D	178976476	178976486	1	24	430.433	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	3	7	3	23	21	23	21	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760943	1	179163045	A	AT	360	PASS	ABL2	CCDS44283.1	r.?	-	-	Ins	intronic	I	179163045	179163053	1	16	318.008	-	-	7	1	1	ABL2|CCDS44283.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABL2|CCDS44283.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	3	3	6	4	24	33	25	33	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759760963	1	179188537	GA	G	420	PASS	ABL2	CCDS44283.1	r.?	-	-	Del	intronic	D	179188537	179188547	1	18	376.629	-	-	9	1	1	ABL2|CCDS44283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABL2|CCDS44283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	5	2	6	4	24	21	24	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761156	1	179509525	CT	C	420	PASS	C1orf125	CCDS30948.1	r.?	-	-	Del	intronic	D	179509525	179509534	1	20	376.629	-	-	8	1	1	C1orf125|CCDS30948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf125|CCDS30948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	3	4	4	30	27	30	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761199	1	179643632	G	GT	300	PASS	TDRD5	CCDS1332.1	r.?	-	-	Ins	intronic	I	179643632	179643642	1	10	266.01	-	-	9	1	1	TDRD5|CCDS1332.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TDRD5|CCDS1332.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	1	7	19	45	20	45	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761204	1	179654069	CT	C	267	PASS	TDRD5	CCDS1332.1	r.?	-	-	Del	intronic	D	179654069	179654071	1	20	376.629	-	-	1	1	1	TDRD5|CCDS1332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TDRD5|CCDS1332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	4	4	5	33	24	33	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761238	1	179723265	CT	C	360	PASS	FAM163A	CCDS1333.1	r.?	-	-	Del	intronic	D	179723265	179723275	1	15	322.825	-	-	9	1	1	FAM163A|CCDS1333.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM163A|CCDS1333.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	2	4	34	30	34	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761273	1	179844101	TTC	T	300	PASS	TOR1AIP2	CCDS1334.1	r.?	-	-	Del	intronic	D	179844101	179844117	2	10	269.021	-	-	7	1	1	TOR1AIP2|CCDS1334.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TOR1AIP2|CCDS1334.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	3	6	32	36	32	36	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761304	1	179903505	TG	T	360	PASS	-	-	-	-	-	Del	-	D	179903505	179903510	1	15	322.825	-	-	4	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	5	5	26	26	26	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761366	1	180077634	CA	C	300	PASS	CEP350	CCDS1336.1	r.?	-	-	Del	intronic	D	180077634	180077644	1	12	267.215	-	-	9	1	1	CEP350|CCDS1336.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP350|CCDS1336.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	4	4	22	29	22	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761460	1	180326691	GAAGA	G	329	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180326691	180326699	4	12	322.825	-	-	1	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	7	2	33	17	33	17	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761469	1	180342234	TAATA	T	540	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180342234	180342245	4	30	484.237	-	-	2	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	5	4	6	6	24	19	24	19	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761498	1	180400296	TG	T	360	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180400296	180400298	1	16	322.825	-	-	1	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	4	3	20	21	20	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761519	1	180449844	TA	T	480	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180449844	180449853	1	21	429.831	-	-	8	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	6	2	8	2	35	30	35	30	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761851	1	181360676	T	TG	329	PASS	-	-	-	-	-	Ins	-	I	181360676	181360684	1	12	319.213	-	-	7	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	5	1	5	2	27	23	27	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761852	1	181362601	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	181362601	181362610	1	10	262.398	-	-	8	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	4	3	6	26	28	26	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761885	1	181449250	TA	T	449	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181449250	181449260	1	25	430.433	-	-	9	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	4	5	5	37	36	37	36	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761933	1	181665716	GA	G	420	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181665716	181665723	1	20	376.629	-	-	6	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	5	5	34	27	34	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759761996	1	181893019	GA	G	300	PASS	-	-	-	-	-	Del	-	D	181893019	181893028	1	10	269.021	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	4	2	4	23	33	23	33	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762000	1	181917688	GA	G	300	PASS	-	-	-	-	-	Del	-	D	181917688	181917694	1	12	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	3	5	37	35	37	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762128	1	182300586	GA	G	300	PASS	-	-	-	-	-	Del	-	D	182300586	182300594	1	12	268.419	-	-	7	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	2	3	3	44	27	44	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762172	1	182413333	CT	C	329	PASS	-	-	-	-	-	Del	-	D	182413333	182413343	1	15	320.417	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	12	9	0	0	./.	2	4	2	4	24	22	26	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762243	1	182594600	AT	A	480	PASS	-	-	-	-	-	Del	-	D	182594600	182594607	1	24	427.423	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	3	6	4	31	23	31	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762247	1	182619510	TAA	T	509	PASS	RGS8	CCDS41443.1	r.?	-	-	Del	intronic	D	182619510	182619517	2	30	480.023	-	-	6	1	1	RGS8|CCDS41443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS8|CCDS41443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	5	5	5	37	24	37	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762280	1	182736348	CA	C	420	PASS	-	-	-	-	-	Del	-	D	182736348	182736358	1	20	375.425	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	3	5	4	38	33	38	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762287	1	182751891	CA	C	360	PASS	-	-	-	-	-	Del	-	D	182751891	182751901	1	15	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	3	6	37	31	37	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762402	1	183036101	TA	T	315	PASS	LAMC1	CCDS1351.1	r.?	-	-	Del	intronic	D	183036101	183036111	1	7	322.825	-	-	9	1	1	LAMC1|CCDS1351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMC1|CCDS1351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	0	6	1	8	13	31	13	31	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762422	1	183075331	GA	G	300	PASS	LAMC1	CCDS1351.1	r.?	-	-	Del	intronic	D	183075331	183075341	1	10	269.021	-	-	9	1	1	LAMC1|CCDS1351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMC1|CCDS1351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	1	7	2	36	29	36	29	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762494	1	183224496	CT	C	300	PASS	NMNAT2	CCDS1353.1	r.?	-	-	Del	intronic	D	183224496	183224506	1	12	269.021	-	-	9	1	1	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	4	17	30	17	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762505	1	183249849	AT	A	300	PASS	NMNAT2	CCDS1353.1	r.?	-	-	Del	intronic	D	183249849	183249859	1	10	265.408	-	-	9	1	1	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	1	4	2	4	20	28	20	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762510	1	183267368	TA	T	360	PASS	NMNAT2	CCDS1353.1	r.?	-	-	Del	intronic	D	183267368	183267376	1	15	322.825	-	-	7	1	1	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	3	7	20	34	20	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762651	1	183692184	TG	T	300	PASS	RGL1	CCDS1359.1	r.?	-	-	Del	intronic	D	183692184	183692192	1	10	269.021	-	-	7	1	1	RGL1|CCDS1359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RGL1|CCDS1359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	4	2	20	21	20	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762844	1	184240886	TC	T	269	PASS	-	-	-	-	-	Del	-	D	184240886	184240892	1	10	269.021	-	-	5	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	1	4	1	4	18	25	18	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762914	1	184467522	TTCTC	T	300	PASS	C1orf21	CCDS1362.1	r.?	-	-	Del	intronic	D	184467522	184467539	4	10	269.021	-	-	8	1	1	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	1	7	4	42	29	42	29	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759762921	1	184490329	AT	A	360	PASS	C1orf21	CCDS1362.1	r.?	-	-	Del	intronic	D	184490329	184490338	1	15	322.825	-	-	8	1	1	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	4	2	4	2	31	22	31	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763003	1	184799627	GA	G	300	PASS	FAM129A	CCDS1364.1	r.?	-	-	Del	intronic	D	184799627	184799637	1	12	269.021	-	-	9	1	1	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	3	4	32	22	32	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763013	1	184842435	GA	G	420	PASS	FAM129A	CCDS1364.1	r.?	-	-	Del	intronic	D	184842435	184842442	1	18	376.629	-	-	6	1	1	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	2	5	4	5	35	25	35	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763066	1	184983696	CT	C	300	PASS	-	-	-	-	-	Del	-	D	184983696	184983706	1	10	267.817	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	3	4	25	31	25	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763147	1	185200364	AT	A	360	PASS	C1orf26	CCDS1367.1	r.?	-	-	Del	intronic	D	185200364	185200372	1	7	322.825	-	-	7	1	1	C1orf26|CCDS1367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf26|CCDS1367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	0	6	0	6	10	27	10	27	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763216	1	185454957	GA	G	480	PASS	-	-	-	-	-	Del	-	D	185454957	185454966	1	24	430.433	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	3	7	3	35	19	35	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763305	1	185823428	TA	T	420	PASS	HMCN1	CCDS30956.1	r.?	-	-	Del	intronic	D	185823428	185823438	1	20	376.629	-	-	9	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	3	4	5	22	34	22	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763398	1	186194815	TA	T	600	PASS	-	-	-	-	-	Del	-	D	186194815	186194824	1	35	538.042	-	-	8	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	4	9	6	25	29	25	29	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763431	1	186337586	GA	G	300	PASS	TPR	CCDS41446.1	r.?	-	-	Del	intronic	D	186337586	186337594	1	12	268.419	-	-	7	1	1	TPR|CCDS41446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPR|CCDS41446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	2	6	4	34	22	34	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763477	1	186484035	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	186484035	186484044	1	15	319.213	-	-	8	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	2	4	3	5	27	36	27	36	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763534	1	186619299	TG	T	360	PASS	-	-	-	-	-	Del	-	D	186619299	186619306	1	16	321.621	-	-	6	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	3	3	3	5	32	27	32	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763547	1	186637528	C	CT	333	PASS	PTGS2	CCDS1371.1	r.?	-	-	Ins	downstream	I	186637528	186637538	1	21	421.402	-	-	9	1	1	PTGS2|CCDS1371.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PTGS2|CCDS1371.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	15	12	16	0	0	./.	2	6	2	7	32	34	33	35	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763600	1	186822188	AT	A	300	PASS	PLA2G4A	CCDS1372.1	r.?	-	-	Del	intronic	D	186822188	186822197	1	6	269.021	-	-	8	1	1	PLA2G4A|CCDS1372.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLA2G4A|CCDS1372.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	0	5	0	6	4	30	4	30	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763653	1	186925949	AT	A	360	PASS	PLA2G4A	CCDS1372.1	r.?	-	-	Del	intronic	D	186925949	186925959	1	15	322.825	-	-	9	1	1	PLA2G4A|CCDS1372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLA2G4A|CCDS1372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	4	2	5	12	36	12	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763860	1	187616311	GT	G	420	PASS	-	-	-	-	-	Del	-	D	187616311	187616321	1	20	376.027	-	-	9	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	6	4	23	34	23	34	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763919	1	187804008	CT	C	360	PASS	-	-	-	-	-	Del	-	D	187804008	187804018	1	15	322.223	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	2	5	2	19	20	19	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763966	1	187953667	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	187953667	187953676	1	12	266.01	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	6	2	26	33	26	34	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759763967	1	187958653	AT	A	300	PASS	-	-	-	-	-	Del	-	D	187958653	187958663	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	2	17	16	17	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764281	1	188640618	GT	G	540	PASS	-	-	-	-	-	Del	-	D	188640618	188640625	1	24	484.237	-	-	6	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	7	2	8	3	33	31	33	31	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764331	1	188765818	C	CT	305	PASS	-	-	-	-	-	Ins	-	I	188765818	188765827	1	20	366.394	-	-	8	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	4	3	5	3	36	25	36	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764448	1	189356430	CT	C	300	PASS	-	-	-	-	-	Del	-	D	189356430	189356440	1	10	267.817	-	-	9	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	1	4	2	4	23	23	23	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764659	1	189959772	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	189959772	189959781	1	21	425.617	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	2	7	2	39	33	42	34	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764714	1	190226522	C	CT	300	PASS	FAM5C	CCDS1373.1	r.?	-	-	Ins	intronic	I	190226522	190226529	1	12	266.01	-	-	6	1	1	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	4	23	27	23	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764858	1	190755121	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	190755121	190755130	1	12	319.213	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	1	6	1	43	33	44	33	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759764912	1	190913469	GT	G	480	PASS	-	-	-	-	-	Del	-	D	190913469	190913475	1	24	429.831	-	-	5	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	5	3	8	28	29	28	29	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765077	1	191572197	GA	G	420	PASS	-	-	-	-	-	Del	-	D	191572197	191572206	1	14	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	6	2	7	12	33	12	33	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765204	1	192126587	AT	A	360	PASS	RGS18	CCDS1374.1	r.?	-	-	Del	upstream	D	192126587	192126596	1	16	322.825	-	-	8	1	1	RGS18|CCDS1374.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RGS18|CCDS1374.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	4	10	4	10	0	0	./.	3	3	4	5	8	14	8	14	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765277	1	192378827	CCT	C	480	PASS	-	-	-	-	-	Del	-	D	192378827	192378843	2	24	430.433	-	-	7	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	5	4	6	26	39	26	39	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765345	1	192686246	CA	C	420	PASS	-	-	-	-	-	Del	-	D	192686246	192686255	1	14	376.027	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	1	6	3	6	17	20	17	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765358	1	192724839	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	192724839	192724849	1	20	370.609	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	4	4	5	30	57	30	57	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765398	1	192917927	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	192917927	192917936	1	40	638.425	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	9	4	10	36	53	37	53	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765531	1	193348136	AC	A	360	PASS	-	-	-	-	-	Del	-	D	193348136	193348142	1	15	322.825	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	3	5	28	37	28	37	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765619	1	193627365	GA	G	480	PASS	-	-	-	-	-	Del	-	D	193627365	193627374	1	24	428.025	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	3	7	4	34	37	34	37	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759765927	1	194540934	TA	T	660	PASS	-	-	-	-	-	Del	-	D	194540934	194540943	1	42	590.04	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	5	7	5	20	32	20	32	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766001	1	194874608	AT	A	320	PASS	-	-	-	-	-	Del	-	D	194874608	194874613	1	16	430.433	-	-	4	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	7	1	8	1	31	16	31	16	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766028	1	194950054	CT	C	540	PASS	-	-	-	-	-	Del	-	D	194950054	194950061	1	24	483.033	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	7	4	7	49	36	49	36	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766071	1	195076763	CA	C	360	PASS	-	-	-	-	-	Del	-	D	195076763	195076771	1	15	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	3	4	29	12	29	12	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766178	1	195424866	CT	C	360	PASS	-	-	-	-	-	Del	-	D	195424866	195424876	1	16	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	3	3	4	4	17	26	17	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766249	1	195660909	TG	T	300	PASS	-	-	-	-	-	Del	-	D	195660909	195660911	1	12	267.215	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	8	3	25	5	25	5	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766476	1	196541598	AAG	A	360	PASS	KCNT2	CCDS1384.1	r.?	-	-	Del	intronic	D	196541598	196541611	2	12	322.825	-	-	6	1	1	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	5	1	5	2	36	32	36	32	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766480	1	196548632	CT	C	300	PASS	KCNT2	CCDS1384.1	r.?	-	-	Del	intronic	D	196548632	196548642	1	6	269.021	-	-	9	1	1	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	0	5	0	7	20	51	20	51	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766510	1	196680921	CT	C	360	PASS	CFH	CCDS1385.1	r.?	-	-	Del	intronic	D	196680921	196680927	1	15	322.825	-	-	5	1	1	CFH|CCDS1385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CFH|CCDS1385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	2	4	4	4	26	25	26	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766645	1	197159215	AT	A	360	PASS	ZBTB41	CCDS30960.1	r.?	-	-	Del	intronic	D	197159215	197159225	1	15	314.396	-	-	9	1	1	ZBTB41|CCDS30960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZBTB41|CCDS30960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	2	5	3	24	28	24	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766712	1	197379559	G	GA	420	PASS	CRB1	CCDS1390.1	r.?	-	-	Ins	intronic	I	197379559	197379565	1	14	372.415	-	-	5	1	1	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	6	1	7	24	41	24	41	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766720	1	197406020	AT	A	360	PASS	CRB1	CCDS1390.1	r.?	-	-	Del	intronic	D	197406020	197406029	1	15	322.825	-	-	8	1	1	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	2	5	3	31	8	31	8	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759766930	1	198086165	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	198086165	198086170	1	12	266.01	-	-	4	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	2	3	11	33	11	33	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767130	1	198600310	TG	T	300	PASS	-	-	-	-	-	Del	-	D	198600310	198600312	1	12	269.021	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	2	3	3	23	28	23	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767268	1	199105912	TA	T	300	PASS	-	-	-	-	-	Del	-	D	199105912	199105922	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	3	2	4	28	28	28	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767309	1	199315481	CT	C	540	PASS	-	-	-	-	-	Del	-	D	199315481	199315491	1	30	483.635	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	4	5	5	26	24	26	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767329	1	199392481	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	199392481	199392497	2	12	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	2	4	3	29	20	29	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767403	1	199613148	CA	C	300	PASS	-	-	-	-	-	Del	-	D	199613148	199613158	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	4	1	4	2	17	24	17	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767465	1	199796605	CA	C	298	PASS	-	-	-	-	-	Del	-	D	199796605	199796615	1	15	321.621	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	3	6	18	24	18	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767528	1	199897417	TA	T	360	PASS	-	-	-	-	-	Del	-	D	199897417	199897427	1	12	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	1	5	2	24	22	24	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767731	1	200369052	GT	G	300	PASS	-	-	-	-	-	Del	-	D	200369052	200369062	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	1	4	1	7	26	30	26	30	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759767945	1	200745649	AAG	A	780	PASS	CAMSAP1L1	CCDS1404.1	r.?	-	-	Del	intronic	D	200745649	200745663	2	56	693.433	-	-	6	1	1	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	6	7	7	7	34	24	34	24	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768082	1	201195811	CA	C	360	PASS	IGFN1	ENST00000451870	r.?	-	-	Del	intronic	D	201195811	201195821	1	15	322.825	-	-	9	1	1	IGFN1|ENST00000451870|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGFN1|ENST00000451870|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	4	2	7	2	29	32	29	32	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768135	1	201372329	GA	G	420	PASS	TNNI1	CCDS1411.1	r.?	-	-	Del	downstream	D	201372329	201372335	1	18	376.027	-	-	5	1	1	TNNI1|CCDS1411.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LAD1|CCDS1410.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	12	18	12	0	0	./.	2	5	2	7	31	39	31	39	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768246	1	201642155	CA	C	420	PASS	NAV1	CCDS1414.1	r.?	-	-	Del	intronic	D	201642155	201642165	1	18	374.221	-	-	9	1	1	NAV1|CCDS1414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAV1|CCDS1414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	2	7	3	36	23	36	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768297	1	201775279	AT	A	300	PASS	NAV1	CCDS1414.1	r.?	-	-	Del	intronic	D	201775279	201775285	1	12	268.419	-	-	5	1	1	NAV1|CCDS1414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAV1|CCDS1414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	3	2	5	2	35	32	35	32	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768373	1	201940490	TA	T	300	PASS	TIMM17A	CCDS1417.1	r.?	-	-	Del	downstream	D	201940490	201940494	1	12	246.745	-	-	3	1	1	TIMM17A|CCDS1417.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TIMM17A|CCDS1417.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	22	28	22	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768446	1	202044431	CT	C	360	PASS	-	-	-	-	-	Del	-	D	202044431	202044439	1	16	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	3	3	3	6	25	37	25	37	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768484	1	202086133	CT	C	509	PASS	-	-	-	-	-	Del	-	D	202086133	202086143	1	30	484.237	-	-	9	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	5	5	6	19	34	19	34	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768734	1	202821495	GT	G	420	PASS	-	-	-	-	-	Del	-	D	202821495	202821504	1	20	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	4	3	4	3	32	23	32	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768899	1	203216898	AT	A	360	PASS	-	-	-	-	-	Del	-	D	203216898	203216908	1	16	319.213	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	4	4	37	22	37	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759768941	1	203328411	TG	T	300	PASS	-	-	-	-	-	Del	-	D	203328411	203328418	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	2	3	38	31	38	31	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769155	1	203831447	T	TA	360	PASS	SNRPE	CCDS30979.1	r.?	-	-	Ins	intronic	I	203831447	203831453	1	12	319.213	-	-	5	1	1	SNRPE|CCDS30979.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNRPE|CCDS30979.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	1	5	2	6	22	25	23	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769203	1	203903793	AT	A	300	PASS	-	-	-	-	-	Del	-	D	203903793	203903802	1	6	268.419	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	0	5	0	27	2	27	2	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769324	1	204212447	CAGG	C	507	PASS	PLEKHA6	CCDS1444.1	r.?	-	-	Del	intronic	D	204212447	204212453	3	32	524.796	-	-	1	1	1	PLEKHA6|CCDS1444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHA6|CCDS1444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	3	7	3	7	20	24	20	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769334	1	204237795	CCA	C	600	PASS	PLEKHA6	CCDS1444.1	r.?	-	-	Del	intronic	D	204237795	204237800	2	32	538.042	-	-	2	1	1	PLEKHA6|CCDS1444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHA6|CCDS1444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	7	3	7	3	41	19	41	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769482	1	204569867	AT	A	300	PASS	MDM4	ENST00000391947	r.?	-	-	Del	intronic	D	204569867	204569876	1	12	269.021	-	-	8	1	1	MDM4|ENST00000391947|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	MDM4|ENST00000391947|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	4	4	36	29	36	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769525	1	204688250	AT	A	360	PASS	-	-	-	-	-	Del	-	D	204688250	204688257	1	7	322.825	-	-	6	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	0	6	1	8	26	25	26	25	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769545	1	204754849	GT	G	385	PASS	-	-	-	-	-	Del	-	D	204754849	204754859	1	24	430.433	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	4	7	30	32	30	32	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769592	1	204879803	AT	A	269	PASS	NFASC	CCDS30982.1	r.?	-	-	Del	intronic	D	204879803	204879812	1	12	269.021	-	-	8	1	1	NFASC|CCDS30982.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NFASC|CCDS30982.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	5	3	31	17	31	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759769788	1	205322369	GA	G	300	PASS	KLHDC8A	CCDS30985.1	r.?	-	-	Del	intronic	D	205322369	205322378	1	10	269.021	-	-	8	1	1	KLHDC8A|CCDS30985.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KLHDC8A|CCDS30985.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	3	18	23	18	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770131	1	206287468	CT	C	297	PASS	C1orf186	ENST00000331555	r.?	-	-	Del	intronic	D	206287468	206287476	1	10	269.021	-	-	7	1	1	C1orf186|ENST00000331555|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C1orf186|ENST00000331555|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	1	4	2	5	56	48	56	48	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770241	1	206751708	AT	A	509	PASS	RASSF5	CCDS1464.1	r.?	-	-	Del	intronic	D	206751708	206751715	1	30	484.237	-	-	6	1	1	RASSF5|CCDS1464.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASSF5|CCDS1464.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	5	5	6	42	24	42	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770258	1	206813689	CT	C	480	PASS	DYRK3	CCDS31000.1	r.?	-	-	Del	intronic	D	206813689	206813698	1	24	430.433	-	-	8	1	1	DYRK3|CCDS31000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DYRK3|CCDS31000.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	5	3	6	4	28	28	28	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770299	1	206965808	CT	C	300	PASS	-	-	-	-	-	Del	-	D	206965808	206965818	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	1	5	1	29	26	29	26	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770357	1	207125065	TC	T	540	PASS	-	-	-	-	-	Del	-	D	207125065	207125073	1	30	483.033	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	4	5	6	6	34	34	34	34	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770430	1	207442810	CT	C	360	PASS	-	-	-	-	-	Del	-	D	207442810	207442820	1	15	320.417	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	4	2	4	2	32	13	32	13	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770469	1	207558275	TG	T	300	PASS	-	-	-	-	-	Del	-	D	207558275	207558282	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	2	5	3	29	26	29	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770493	1	207665573	G	GA	600	PASS	CR1	CCDS44308.1	r.?	-	-	Ins	upstream	I	207665573	207665580	1	35	529.011	-	-	6	1	1	CR1|CCDS44308.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CR1|CCDS44308.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	11	12	11	0	0	./.	4	6	4	8	30	41	30	41	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770638	1	208298736	GA	G	269	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208298736	208298739	1	12	269.021	-	-	2	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	3	2	3	2	19	32	19	32	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770641	1	208316695	CT	C	300	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208316695	208316697	1	12	269.021	-	-	1	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	2	3	4	4	31	24	31	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770652	1	208350769	GATA	G	687	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208350769	208350778	3	56	699.454	-	-	2	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	7	6	7	8	31	42	31	42	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770757	1	208660534	CT	C	300	PASS	-	-	-	-	-	Del	-	D	208660534	208660542	1	12	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	3	2	6	4	23	29	23	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770781	1	208765377	AT	A	420	PASS	-	-	-	-	-	Del	-	D	208765377	208765386	1	20	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	3	4	4	22	29	22	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770796	1	208814043	GA	G	480	PASS	-	-	-	-	-	Del	-	D	208814043	208814052	1	16	429.229	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	1	7	4	8	25	30	25	30	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770797	1	208819008	CT	C	300	PASS	-	-	-	-	-	Del	-	D	208819008	208819018	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	5	19	5	19	0	0	./.	3	2	4	3	19	21	19	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770832	1	208919594	AC	A	360	PASS	-	-	-	-	-	Del	-	D	208919594	208919600	1	12	322.825	-	-	5	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	5	2	40	8	40	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759770882	1	209077048	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	209077048	209077055	1	12	266.01	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	7	27	35	27	35	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771128	1	209947649	AT	A	420	PASS	TRAF3IP3	CCDS1490.1	r.?	-	-	Del	intronic	D	209947649	209947659	1	20	376.629	-	-	9	1	1	TRAF3IP3|CCDS1490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAF3IP3|CCDS1490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	4	3	6	3	33	23	33	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771216	1	210273907	AT	A	360	PASS	SYT14	CCDS31014.1	r.?	-	-	Del	intronic	D	210273907	210273915	1	12	322.825	-	-	7	1	1	SYT14|CCDS31014.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT14|CCDS31014.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	5	1	8	8	39	8	39	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771243	1	210350138	CT	C	269	PASS	-	-	-	-	-	Del	-	D	210350138	210350148	1	12	267.215	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	6	3	36	19	36	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771290	1	210476252	TC	T	540	PASS	-	-	-	-	-	Del	-	D	210476252	210476259	1	28	483.033	-	-	6	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	6	3	6	5	27	35	27	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771436	1	210871356	CT	C	300	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	210871356	210871361	1	10	269.021	-	-	4	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	1	4	1	7	22	44	22	44	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771443	1	210906499	AT	A	360	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	210906499	210906509	1	12	322.825	-	-	9	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	1	5	3	6	31	39	31	39	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771447	1	210909987	GAA	G	420	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	210909987	210909996	2	18	376.629	-	-	8	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	5	2	5	24	27	24	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771492	1	211039320	G	GA	420	PASS	KCNH1	CCDS31015.1	r.?	-	-	Ins	intronic	I	211039320	211039329	1	18	372.415	-	-	8	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	15	20	0	0	./.	2	5	5	5	21	35	21	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771493	1	211039661	TA	T	420	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	211039661	211039668	1	20	376.629	-	-	6	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	3	4	4	25	21	25	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771537	1	211136555	T	TA	300	PASS	KCNH1	CCDS31015.1	r.?	-	-	Ins	intronic	I	211136555	211136564	1	12	266.01	-	-	8	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	4	4	41	36	41	37	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771538	1	211136555	TA	T	420	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	211136555	211136564	1	20	376.629	-	-	8	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	9	5	37	35	37	35	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771548	1	211170604	GA	G	337	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	211170604	211170613	1	16	322.825	-	-	8	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	3	5	35	35	35	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771609	1	211343340	TA	T	360	PASS	-	-	-	-	-	Del	-	D	211343340	211343349	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	4	2	7	29	35	29	35	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771638	1	211426892	CT	C	300	PASS	-	-	-	-	-	Del	-	D	211426892	211426902	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	6	3	27	28	27	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771701	1	211605952	CT	C	360	PASS	-	-	-	-	-	Del	-	D	211605952	211605962	1	12	322.223	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	1	5	1	27	14	27	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771762	1	211723643	CT	C	300	PASS	-	-	-	-	-	Del	-	D	211723643	211723653	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	1	4	3	29	28	29	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771823	1	211840596	GA	G	300	PASS	NEK2	CCDS1500.1	r.?	-	-	Del	intronic	D	211840596	211840606	1	12	269.021	-	-	9	1	1	NEK2|CCDS1500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK2|CCDS1500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	3	4	22	29	22	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771839	1	211892512	CT	C	300	PASS	-	-	-	-	-	Del	-	D	211892512	211892522	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	1	4	1	4	2	39	2	39	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771845	1	211911194	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	211911194	211911201	1	15	312.59	-	-	6	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	2	4	3	4	25	30	25	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771945	1	212116425	CT	C	360	PASS	INTS7	CCDS1501.1	r.?	-	-	Del	intronic	D	212116425	212116431	1	12	322.825	-	-	5	1	1	INTS7|CCDS1501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INTS7|CCDS1501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	1	5	2	6	23	35	23	35	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759771978	1	212207425	CA	C	360	PASS	DTL	CCDS1502.1	r.?	-	-	Del	upstream	D	212207425	212207435	1	12	320.417	-	-	9	1	1	DTL|CCDS1502.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	INTS7|CCDS1501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	1	5	3	8	15	25	15	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772014	1	212282831	AT	A	300	PASS	DTL	CCDS1502.1	r.?	-	-	Del	downstream	D	212282831	212282841	1	10	269.021	-	-	9	1	1	DTL|CCDS1502.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DTL|CCDS1502.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	16	13	16	0	0	./.	1	4	1	6	20	35	20	35	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772041	1	212334266	GC	G	360	PASS	-	-	-	-	-	Del	-	D	212334266	212334272	1	15	322.825	-	-	5	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	2	4	2	7	29	33	29	33	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772283	1	212944356	TA	T	660	PASS	NSL1	CCDS1509.1	r.?	-	-	Del	intronic	D	212944356	212944365	1	42	581.611	-	-	8	1	1	NSL1|CCDS1509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSL1|CCDS1509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	6	5	7	47	40	47	40	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772290	1	212957348	CA	C	300	PASS	NSL1	CCDS1509.1	r.?	-	-	Del	intronic	D	212957348	212957358	1	12	269.021	-	-	9	1	1	NSL1|CCDS1509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSL1|CCDS1509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	2	3	3	5	20	25	20	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772347	1	213047201	CT	C	360	PASS	FLVCR1	CCDS1510.1	r.?	-	-	Del	intronic	D	213047201	213047211	1	12	322.825	-	-	9	1	1	FLVCR1|CCDS1510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLVCR1|CCDS1510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	1	6	4	40	25	40	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772490	1	213329007	CT	C	600	PASS	RPS6KC1	CCDS1513.1	r.?	-	-	Del	intronic	D	213329007	213329017	1	27	536.235	-	-	9	1	1	RPS6KC1|CCDS1513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS6KC1|CCDS1513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	8	4	9	31	33	31	33	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772540	1	213472180	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	213472180	213472187	1	12	318.008	-	-	6	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	1	7	1	40	5	41	5	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772557	1	213519967	GT	G	360	PASS	-	-	-	-	-	Del	-	D	213519967	213519977	1	15	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	4	2	5	2	32	12	32	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772685	1	214030970	AG	A	449	PASS	-	-	-	-	-	Del	-	D	214030970	214030974	1	25	430.433	-	-	3	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	4	4	6	4	31	29	31	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772746	1	214203528	TA	T	300	PASS	PROX1	CCDS31021.1	r.?	-	-	Del	intronic	D	214203528	214203538	1	12	269.021	-	-	9	1	1	PROX1|CCDS31021.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PROX1|CCDS31021.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	2	3	2	4	36	27	36	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772854	1	214545879	GA	G	600	PASS	PTPN14	CCDS1514.1	r.?	-	-	Del	intronic	D	214545879	214545886	1	32	538.042	-	-	6	1	1	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	7	3	7	21	41	21	41	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772871	1	214593031	CA	C	420	PASS	PTPN14	CCDS1514.1	r.?	-	-	Del	intronic	D	214593031	214593040	1	20	376.629	-	-	8	1	1	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	4	3	5	25	33	25	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772929	1	214681741	CT	C	720	PASS	PTPN14	CCDS1514.1	r.?	-	-	Del	intronic	D	214681741	214681749	1	45	645.65	-	-	7	1	1	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	8	4	10	4	41	23	41	23	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759772968	1	214790396	C	CT	300	PASS	CENPF	CCDS31023.1	r.?	-	-	Ins	intronic	I	214790396	214790404	1	12	265.408	-	-	7	1	-	CENPF|CCDS31023.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CENPF|CCDS31023.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	3	2	4	3	24	11	24	11	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773009	1	214902076	AT	A	360	PASS	-	-	-	-	-	Del	-	D	214902076	214902083	1	16	322.825	-	-	6	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	3	4	15	22	15	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773032	1	214997997	GT	G	300	PASS	-	-	-	-	-	Del	-	D	214997997	214998007	1	12	265.408	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	2	4	28	27	28	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773077	1	215160493	CT	C	420	PASS	-	-	-	-	-	Del	-	D	215160493	215160503	1	18	376.629	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	2	5	5	38	23	38	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773201	1	215495879	AT	A	300	PASS	-	-	-	-	-	Del	-	D	215495879	215495889	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	19	6	19	6	0	0	./.	2	3	2	3	15	32	15	32	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773264	1	215874988	CT	C	282	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	215874988	215874996	1	16	322.825	-	-	7	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	3	3	5	4	36	30	36	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773273	1	215911707	CT	C	360	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	215911707	215911715	1	7	322.825	-	-	7	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	0	6	0	7	3	28	3	28	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773307	1	216018860	TA	T	360	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216018860	216018870	1	16	322.825	-	-	9	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	3	31	24	31	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773495	1	216713176	CA	C	360	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	216713176	216713186	1	15	322.825	-	-	9	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	2	5	4	26	4	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773500	1	216723861	TAC	T	360	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	216723861	216723867	2	15	322.825	-	-	2	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	2	4	38	35	38	35	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773523	1	216778721	TA	T	300	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	216778721	216778731	1	12	269.021	-	-	9	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	3	5	11	31	11	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773573	1	216898142	AT	A	360	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	216898142	216898150	1	12	317.406	-	-	7	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	5	1	8	1	25	14	25	14	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773704	1	217234403	CT	C	269	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	217234403	217234410	1	12	269.021	-	-	6	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	3	3	39	12	39	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773746	1	217318784	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	217318784	217318793	1	10	266.01	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	1	4	1	22	24	22	25	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773747	1	217318784	GA	G	360	PASS	-	-	-	-	-	Del	-	D	217318784	217318793	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	4	3	4	22	23	22	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773754	1	217339324	CT	C	300	PASS	-	-	-	-	-	Del	-	D	217339324	217339332	1	12	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	3	2	3	2	24	23	24	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773785	1	217456026	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	217456026	217456033	1	12	266.01	-	-	6	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	3	11	39	11	39	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773795	1	217487018	GA	G	360	PASS	-	-	-	-	-	Del	-	D	217487018	217487028	1	16	322.223	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	4	27	30	27	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773887	1	217844755	G	GA	300	PASS	SPATA17	CCDS1519.1	r.?	-	-	Ins	intronic	I	217844755	217844761	1	10	266.01	-	-	5	1	1	SPATA17|CCDS1519.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPATA17|CCDS1519.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	4	1	28	16	28	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759773915	1	217950569	CT	C	300	PASS	SPATA17	CCDS1519.1	r.?	-	-	Del	intronic	D	217950569	217950579	1	10	269.021	-	-	9	1	1	SPATA17|CCDS1519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPATA17|CCDS1519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	13	21	13	0	0	./.	1	4	4	4	16	26	16	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774020	1	218261835	AT	A	300	PASS	-	-	-	-	-	Del	-	D	218261835	218261845	1	12	267.215	-	-	9	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	3	4	23	23	23	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774072	1	218457138	AT	A	449	PASS	RRP15	CCDS1520.2	r.?	-	-	Del	upstream	D	218457138	218457147	1	24	424.413	-	-	8	1	1	RRP15|CCDS1520.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RRP15|CCDS1520.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	4	7	4	0	0	./.	3	5	4	7	34	32	34	32	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774086	1	218522905	AT	A	540	PASS	TGFB2	CCDS44318.1	r.?	-	-	Del	intronic	D	218522905	218522912	1	30	480.625	-	-	6	1	1	TGFB2|CCDS44318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TGFB2|CCDS44318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	5	5	26	23	26	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774087	1	218524857	CT	C	300	PASS	TGFB2	CCDS44318.1	r.?	-	-	Del	intronic	D	218524857	218524866	1	12	269.021	-	-	8	1	1	TGFB2|CCDS44318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TGFB2|CCDS44318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	4	3	21	29	21	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774106	1	218578726	ACT	A	300	PASS	TGFB2	CCDS44318.1	r.?	-	-	Del	intronic	D	218578726	218578745	2	10	267.817	-	-	9	1	1	TGFB2|CCDS44318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TGFB2|CCDS44318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	1	4	2	5	24	29	24	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774281	1	219135852	TA	T	360	PASS	-	-	-	-	-	Del	-	D	219135852	219135861	1	15	322.825	-	-	8	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	2	4	3	5	21	39	21	39	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774420	1	219586209	AT	A	360	PASS	-	-	-	-	-	Del	-	D	219586209	219586217	1	15	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	7	2	30	25	30	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774552	1	219947307	GA	G	360	PASS	-	-	-	-	-	Del	-	D	219947307	219947314	1	12	322.825	-	-	6	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	1	6	3	40	32	40	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774601	1	220120874	CA	C	425	PASS	-	-	-	-	-	Del	-	D	220120874	220120884	1	21	430.433	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	2	6	3	19	37	19	37	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774622	1	220163290	AG	A	300	PASS	EPRS	CCDS31027.1	r.?	-	-	Del	intronic	D	220163290	220163297	1	12	268.419	-	-	6	1	1	EPRS|CCDS31027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPRS|CCDS31027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	2	3	2	5	31	39	31	39	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774646	1	220199605	CA	C	329	PASS	EPRS	CCDS31027.1	r.?	-	-	Del	intronic	D	220199605	220199611	1	15	322.223	-	-	5	1	1	EPRS|CCDS31027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPRS|CCDS31027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	2	4	4	24	22	24	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774716	1	220347641	AT	A	389	PASS	RAB3GAP2	CCDS31028.1	r.?	-	-	Del	intronic	D	220347641	220347650	1	20	376.629	-	-	8	1	1	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	5	4	31	14	31	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774725	1	220382225	AT	A	480	PASS	RAB3GAP2	CCDS31028.1	r.?	-	-	Del	intronic	D	220382225	220382232	1	21	430.433	-	-	6	1	1	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	2	6	2	7	28	25	28	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774728	1	220421059	C	CA	269	PASS	RAB3GAP2	CCDS31028.1	r.?	-	-	Ins	intronic	I	220421059	220421066	1	6	266.01	-	-	6	1	1	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	0	5	0	9	2	41	2	41	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774736	1	220447856	AG	A	600	PASS	RAB3GAP2	CCDS31028.1	r.?	-	-	Del	upstream	D	220447856	220447864	1	35	538.042	-	-	7	1	1	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	8	9	8	0	0	./.	6	4	6	5	30	35	30	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774835	1	220704284	AT	A	300	PASS	MARK1	CCDS31029.2	r.?	-	-	Del	intronic	D	220704284	220704291	1	12	269.021	-	-	6	1	1	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	3	3	19	22	19	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774867	1	220803460	G	GT	360	PASS	MARK1	CCDS31029.2	r.?	-	-	Ins	intronic	I	220803460	220803468	1	16	319.213	-	-	7	1	1	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	5	3	35	29	35	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774954	1	221139783	CA	C	540	PASS	-	-	-	-	-	Del	-	D	221139783	221139792	1	24	484.237	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	7	2	8	2	41	22	41	22	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759774961	1	221158986	AT	A	420	PASS	-	-	-	-	-	Del	-	D	221158986	221158993	1	20	376.629	-	-	6	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	3	6	6	31	31	31	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775009	1	221307859	G	GT	569	PASS	-	-	-	-	-	Ins	-	I	221307859	221307866	1	32	529.613	-	-	6	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	3	7	3	8	21	39	22	39	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775091	1	221649804	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	221649804	221649823	2	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	1	5	1	32	22	32	22	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775115	1	221741578	AT	A	360	PASS	-	-	-	-	-	Del	-	D	221741578	221741587	1	16	318.008	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	5	6	34	36	34	36	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775144	1	221805433	GA	G	300	PASS	-	-	-	-	-	Del	-	D	221805433	221805441	1	12	269.021	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	4	2	28	20	28	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775187	1	221956814	AT	A	540	PASS	-	-	-	-	-	Del	-	D	221956814	221956824	1	24	484.237	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	7	2	7	28	26	28	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775205	1	222007803	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	222007803	222007809	2	20	376.629	-	-	5	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	5	6	26	32	26	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775240	1	222081517	TA	T	420	PASS	-	-	-	-	-	Del	-	D	222081517	222081526	1	20	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	3	4	4	43	21	43	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775327	1	222428235	TG	T	720	PASS	-	-	-	-	-	Del	-	D	222428235	222428244	1	48	637.823	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	7	5	10	6	43	26	43	26	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775444	1	222847953	ATAT	A	360	PASS	AIDA	CCDS1533.1	r.?	-	-	Del	intronic	D	222847953	222847960	3	15	322.825	-	-	2	1	1	AIDA|CCDS1533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIDA|CCDS1533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	2	4	22	24	22	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775446	1	222857994	GA	G	300	PASS	AIDA	CCDS1533.1	r.?	-	-	Del	intronic	D	222857994	222858002	1	12	268.419	-	-	7	1	1	AIDA|CCDS1533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIDA|CCDS1533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	3	2	4	2	31	18	31	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775503	1	223034214	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	223034214	223034223	1	12	266.01	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	2	6	15	37	16	37	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775536	1	223142275	CA	C	600	PASS	DISP1	CCDS1536.1	r.?	-	-	Del	intronic	D	223142275	223142285	1	35	538.042	-	-	9	1	1	DISP1|CCDS1536.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DISP1|CCDS1536.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	6	4	9	21	31	21	31	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775562	1	223188597	AGTT	A	420	PASS	-	-	-	-	-	Del	-	D	223188597	223188604	3	8	372.415	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	0	7	4	8	27	34	27	34	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775575	1	223240332	CT	C	360	PASS	-	-	-	-	-	Del	-	D	223240332	223240340	1	15	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	5	4	46	33	46	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775587	1	223294124	TA	T	300	PASS	TLR5	CCDS31033.1	r.?	-	-	Del	intronic	D	223294124	223294131	1	12	267.817	-	-	6	1	1	TLR5|CCDS31033.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TLR5|CCDS31033.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	44	37	44	37	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775681	1	223675439	CT	C	300	PASS	-	-	-	-	-	Del	-	D	223675439	223675446	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	4	5	22	31	22	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759775797	1	224039110	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	224039110	224039116	1	12	266.01	-	-	5	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	6	5	37	32	38	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776081	1	224527493	TC	T	358	PASS	-	-	-	-	-	Del	-	D	224527493	224527501	1	18	376.629	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	2	6	21	37	21	37	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776177	1	224694740	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	224694740	224694748	1	15	313.192	-	-	7	1	1	-	-	./.	0	0	0	0	12	1	12	1	0	0	./.	4	2	7	7	35	38	35	38	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776178	1	224696728	TA	T	420	PASS	-	-	-	-	-	Del	-	D	224696728	224696738	1	20	374.221	-	-	9	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	4	3	6	4	48	17	48	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776219	1	224809137	GT	G	300	PASS	CNIH3	CCDS1544.1	r.?	-	-	Del	intronic	D	224809137	224809145	1	12	269.021	-	-	7	1	1	CNIH3|CCDS1544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNIH3|CCDS1544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	3	26	32	26	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776253	1	224942383	TA	T	300	PASS	-	-	-	-	-	Del	-	D	224942383	224942390	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	2	3	21	30	21	30	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776262	1	224975524	GA	G	569	PASS	-	-	-	-	-	Del	-	D	224975524	224975534	1	35	529.011	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	4	8	8	26	29	26	29	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776299	1	225101486	CA	C	300	PASS	DNAH14	ENST00000445597	r.?	-	-	Del	intronic	D	225101486	225101495	1	12	269.021	-	-	8	1	1	DNAH14|ENST00000445597|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH14|ENST00000445597|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	2	3	2	4	19	21	19	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776378	1	225522025	T	TA	300	PASS	DNAH14	CCDS44321.1	r.?	-	-	Ins	intronic	I	225522025	225522035	1	10	266.01	-	-	9	1	1	DNAH14|CCDS44321.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH14|CCDS44321.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	1	4	2	4	32	36	32	36	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776456	1	225728670	CA	C	300	PASS	ENAH	CCDS31041.1	r.?	-	-	Del	intronic	D	225728670	225728679	1	10	269.021	-	-	8	1	1	ENAH|CCDS31041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENAH|CCDS31041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	4	1	4	1	28	2	28	2	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776469	1	225775669	C	CA	300	PASS	ENAH	CCDS31041.1	r.?	-	-	Ins	intronic	I	225775669	225775677	1	12	265.408	-	-	7	1	1	ENAH|CCDS31041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENAH|CCDS31041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	9	0	0	./.	2	3	2	3	30	17	30	17	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776516	1	225873431	CA	C	360	PASS	-	-	-	-	-	Del	-	D	225873431	225873441	1	15	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	2	5	7	34	31	34	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776573	1	225976543	GT	G	360	PASS	SRP9	CCDS44323.1	r.?	-	-	Del	intronic	D	225976543	225976553	1	15	322.825	-	-	9	1	1	SRP9|CCDS44323.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	SRP9|CCDS44323.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	3	4	21	23	21	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776706	1	226229393	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	226229393	226229400	2	12	268.419	-	-	3	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	3	2	6	3	34	32	34	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776744	1	226286740	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	226286740	226286750	1	6	266.01	-	-	9	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	5	0	6	3	40	29	40	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776827	1	226441014	CT	C	300	PASS	LIN9	CCDS1553.1	r.?	-	-	Del	intronic	D	226441014	226441023	1	6	265.408	-	-	8	1	1	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	0	5	1	6	16	29	16	30	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776852	1	226496268	TG	T	360	PASS	LIN9	CCDS1553.1	r.?	-	-	Del	intronic	D	226496268	226496276	1	15	317.406	-	-	7	1	1	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	2	4	3	26	16	26	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776930	1	226634520	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	226634520	226634523	1	16	319.213	-	-	2	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	3	3	5	3	33	19	33	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776966	1	226739788	AT	A	540	PASS	C1orf95	CCDS31044.1	r.?	-	-	Del	intronic	D	226739788	226739795	1	28	484.237	-	-	6	1	1	C1orf95|CCDS31044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf95|CCDS31044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	6	4	7	30	33	30	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759776973	1	226764251	AT	A	300	PASS	C1orf95	CCDS31044.1	r.?	-	-	Del	intronic	D	226764251	226764261	1	12	269.021	-	-	9	1	1	C1orf95|CCDS31044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf95|CCDS31044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	4	37	35	37	35	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777008	1	226879727	G	GA	300	PASS	ITPKB	CCDS1555.1	r.?	-	-	Ins	intronic	I	226879727	226879734	1	12	266.01	-	-	6	1	1	ITPKB|CCDS1555.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITPKB|CCDS1555.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	5	5	32	28	32	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777085	1	227084395	CA	C	300	PASS	CABC1	CCDS1557.1	r.?	-	-	Del	upstream	D	227084395	227084405	1	12	264.204	-	-	9	1	1	CABC1|CCDS1557.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CABC1|CCDS1557.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	6	3	25	34	25	34	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777147	1	227278910	GA	G	480	PASS	CDC42BPA	CCDS1558.1	r.?	-	-	Del	intronic	D	227278910	227278919	1	21	430.433	-	-	8	1	1	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	6	2	6	28	36	28	36	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777235	1	227457031	GA	G	420	PASS	CDC42BPA	CCDS1558.1	r.?	-	-	Del	intronic	D	227457031	227457039	1	14	376.629	-	-	7	1	1	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	1	6	1	8	6	23	6	23	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777270	1	227512583	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	227512583	227512592	1	21	425.015	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	2	6	3	37	36	37	36	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777327	1	227593547	CA	C	420	PASS	-	-	-	-	-	Del	-	D	227593547	227593552	1	14	376.629	-	-	4	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	6	2	6	26	25	26	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777373	1	227719449	TG	T	420	PASS	-	-	-	-	-	Del	-	D	227719449	227719456	1	20	373.619	-	-	6	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	4	4	4	37	39	37	39	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777404	1	227829178	T	TA	360	PASS	ZNF678	CCDS1560.1	r.?	-	-	Ins	intronic	I	227829178	227829187	1	16	318.611	-	-	8	1	1	ZNF678|CCDS1560.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF678|CCDS1560.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	3	8	31	36	31	37	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777412	1	227856092	TA	T	360	PASS	-	-	-	-	-	Del	-	D	227856092	227856100	1	7	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	0	6	0	8	4	24	4	24	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777544	1	228384547	TA	T	480	PASS	-	-	-	-	-	Del	-	D	228384547	228384555	1	25	430.433	-	-	7	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	4	4	6	4	34	30	34	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777742	1	229021674	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	229021674	229021681	1	12	264.204	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	3	4	34	20	34	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777798	1	229200788	CT	C	540	PASS	-	-	-	-	-	Del	-	D	229200788	229200798	1	30	480.023	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	4	7	4	29	38	29	38	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777899	1	229482150	CT	C	660	PASS	C1orf96	CCDS1577.1	r.?	-	-	Del	upstream	D	229482150	229482160	1	42	590.04	-	-	9	1	1	C1orf96|CCDS1577.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C1orf96|CCDS1577.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	8	17	8	0	0	./.	5	6	5	7	34	38	34	38	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777919	1	229543827	AG	A	420	PASS	-	-	-	-	-	Del	-	D	229543827	229543833	1	20	376.027	-	-	5	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	3	5	4	35	35	35	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759777963	1	229678129	CA	C	420	PASS	ABCB10	CCDS1580.1	r.?	-	-	Del	intronic	D	229678129	229678139	1	20	376.629	-	-	9	1	1	ABCB10|CCDS1580.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCB10|CCDS1580.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	5	4	33	31	33	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778048	1	229901918	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	229901918	229901928	1	10	266.01	-	-	9	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	1	4	2	29	12	29	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778084	1	230057237	TA	T	300	PASS	-	-	-	-	-	Del	-	D	230057237	230057244	1	12	269.021	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	2	4	2	30	22	30	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778322	1	230804639	AT	A	360	PASS	COG2	CCDS1584.1	r.?	-	-	Del	intronic	D	230804639	230804648	1	15	322.825	-	-	8	1	1	COG2|CCDS1584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COG2|CCDS1584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	4	5	8	27	32	27	32	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778400	1	231077222	A	AT	360	PASS	TTC13	CCDS1588.1	r.?	-	-	Ins	intronic	I	231077222	231077229	1	12	318.611	-	-	6	1	1	TTC13|CCDS1588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC13|CCDS1588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	1	5	3	46	33	46	35	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778442	1	231126678	TTA	T	300	PASS	ARV1	CCDS1589.1	r.?	-	-	Del	intronic	D	231126678	231126682	2	12	269.021	-	-	1	1	1	ARV1|CCDS1589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARV1|CCDS1589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	4	3	35	18	35	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778572	1	231466544	CT	C	300	PASS	EXOC8	CCDS1593.1	r.?	-	-	Del	downstream	D	231466544	231466553	1	10	269.021	-	-	8	1	1	EXOC8|CCDS1593.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL117352.4|ENST00000510952|r.1500delU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	15	8	15	8	0	0	./.	4	1	5	3	37	22	37	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778747	1	231919628	AT	A	480	PASS	DISC1	CCDS31055.1	r.?	-	-	Del	intronic	D	231919628	231919636	1	16	429.831	-	-	7	1	1	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	1	7	5	8	33	42	33	42	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778766	1	231986298	TA	T	420	PASS	DISC1	CCDS31055.1	r.?	-	-	Del	intronic	D	231986298	231986306	1	18	376.629	-	-	7	1	1	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	5	3	5	35	23	35	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778912	1	232400821	AT	A	600	PASS	-	-	-	-	-	Del	-	D	232400821	232400827	1	32	536.837	-	-	5	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	7	3	8	3	50	38	50	38	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759778957	1	232536314	TA	T	360	PASS	SIPA1L2	CCDS41474.1	r.?	-	-	Del	intronic	D	232536314	232536321	1	16	322.825	-	-	6	1	1	SIPA1L2|CCDS41474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIPA1L2|CCDS41474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	3	3	4	4	30	34	30	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779019	1	232751796	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	232751796	232751801	2	12	269.021	-	-	4	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	2	3	2	26	19	26	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779065	1	232872695	CT	C	840	PASS	-	-	-	-	-	Del	-	D	232872695	232872703	1	55	753.258	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	10	5	10	26	42	26	42	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779107	1	232998623	CA	C	540	PASS	-	-	-	-	-	Del	-	D	232998623	232998633	1	30	484.237	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	4	5	6	23	32	23	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779136	1	233119805	CT	C	300	PASS	PCNXL2	CCDS44335.1	r.?	-	-	Del	downstream	D	233119805	233119814	1	6	266.01	-	-	8	1	1	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	6	18	6	18	0	0	./.	0	5	1	7	20	31	20	31	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779288	1	233595393	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	233595393	233595401	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	2	6	25	29	25	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779344	1	233803537	T	TA	267	PASS	KCNK1	CCDS1599.1	r.?	-	-	Ins	intronic	I	233803537	233803547	1	12	263	-	-	9	1	1	KCNK1|CCDS1599.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNK1|CCDS1599.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	4	3	14	20	14	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779378	1	233879952	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	233879952	233879961	1	15	316.202	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	12	17	0	0	./.	2	4	2	7	23	37	23	39	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779454	1	234044611	AT	A	267	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	intronic	D	234044611	234044621	1	16	322.825	-	-	9	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	3	3	6	6	29	28	29	28	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779511	1	234250173	G	GT	360	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Ins	intronic	I	234250173	234250179	1	15	319.213	-	-	5	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	4	2	6	35	33	37	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779568	1	234430648	T	TG	480	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Ins	intronic	I	234430648	234430657	1	25	423.811	-	-	8	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	4	4	6	5	41	34	42	34	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779980	1	235430827	TA	T	420	PASS	ARID4B	CCDS31061.1	r.?	-	-	Del	intronic	D	235430827	235430836	1	20	376.629	-	-	8	1	1	ARID4B|CCDS31061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID4B|CCDS31061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	4	7	6	29	33	29	33	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759779985	1	235436679	T	TA	480	PASS	ARID4B	CCDS31061.1	r.?	-	-	Ins	intronic	I	235436679	235436687	1	24	425.617	-	-	7	1	1	ARID4B|CCDS31061.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARID4B|CCDS31061.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	3	6	5	23	38	23	38	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780161	1	235720749	TC	T	420	PASS	GNG4	CCDS1607.1	r.?	-	-	Del	intronic	D	235720749	235720756	1	20	376.629	-	-	6	1	1	GNG4|CCDS1607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNG4|CCDS1607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	3	4	3	4	29	26	29	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780360	1	236222604	CA	C	300	PASS	NID1	CCDS1608.1	r.?	-	-	Del	intronic	D	236222604	236222613	1	10	269.021	-	-	8	1	1	NID1|CCDS1608.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NID1|CCDS1608.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	1	5	2	36	27	36	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780363	1	236224770	G	GT	360	PASS	NID1	CCDS1608.1	r.?	-	-	Ins	intronic	I	236224770	236224779	1	16	319.213	-	-	8	1	1	NID1|CCDS1608.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NID1|CCDS1608.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	3	3	40	27	41	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780393	1	236271457	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	236271457	236271464	1	10	266.01	-	-	6	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	1	4	4	5	28	37	28	37	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780604	1	236606350	TAAG	T	538	PASS	EDARADD	CCDS31065.1	r.?	-	-	Del	intronic	D	236606350	236606360	3	36	538.042	-	-	3	1	1	EDARADD|CCDS31065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EDARADD|CCDS31065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	5	6	7	33	29	33	29	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780768	1	236836939	AT	A	540	PASS	-	-	-	-	-	Del	-	D	236836939	236836949	1	30	484.237	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	4	6	5	28	35	28	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780925	1	237202424	AT	A	360	PASS	RYR2	ENST00000366574	r.?	-	-	Del	upstream	D	237202424	237202431	1	7	322.825	-	-	6	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RYR2|ENST00000366574|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	13	15	13	0	0	./.	0	6	1	7	7	45	7	45	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780948	1	237238483	CT	C	476	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237238483	237238493	1	35	538.042	-	-	9	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	21	9	21	0	0	./.	4	6	5	7	29	42	29	42	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759780976	1	237317946	CA	C	300	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237317946	237317956	1	10	267.215	-	-	9	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	1	4	1	14	31	14	31	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781014	1	237393747	AT	A	480	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237393747	237393757	1	24	430.433	-	-	9	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	3	6	5	25	25	25	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781055	1	237491451	AT	A	300	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237491451	237491460	1	12	269.021	-	-	8	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	4	2	27	18	27	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781072	1	237537794	C	CA	360	PASS	RYR2	ENST00000366574	r.?	-	-	Ins	intronic	I	237537794	237537801	1	12	319.213	-	-	6	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	1	5	2	7	28	41	30	41	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781244	1	237921696	G	GA	360	PASS	RYR2	ENST00000366574	r.?	-	-	Ins	intronic	I	237921696	237921705	1	15	317.406	-	-	8	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	4	3	5	30	22	31	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781293	1	238034306	CT	C	480	PASS	-	-	-	-	-	Del	-	D	238034306	238034316	1	21	428.627	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	6	2	6	2	35	34	35	34	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781327	1	238136837	CT	C	300	PASS	-	-	-	-	-	Del	-	D	238136837	238136847	1	10	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	4	3	6	25	30	25	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781329	1	238143096	GA	G	420	PASS	-	-	-	-	-	Del	-	D	238143096	238143104	1	20	376.629	-	-	7	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	3	6	4	23	39	23	39	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781547	1	238675176	GT	G	420	PASS	-	-	-	-	-	Del	-	D	238675176	238675186	1	14	373.017	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	6	1	7	21	28	21	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781623	1	238934647	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	238934647	238934655	1	25	425.617	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	4	4	7	38	34	38	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781636	1	238961717	CT	C	269	PASS	-	-	-	-	-	Del	-	D	238961717	238961726	1	12	268.419	-	-	8	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	3	2	4	3	30	35	30	35	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781637	1	238965603	CA	C	480	PASS	-	-	-	-	-	Del	-	D	238965603	238965612	1	25	430.433	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	4	6	5	17	23	17	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781784	1	239425593	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	239425593	239425601	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	14	19	15	19	0	0	./.	2	3	3	4	19	19	19	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759781883	1	239679393	CT	C	269	PASS	-	-	-	-	-	Del	-	D	239679393	239679403	1	12	269.021	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	2	3	3	3	35	24	35	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782008	1	240093130	AT	A	420	PASS	-	-	-	-	-	Del	-	D	240093130	240093139	1	18	376.629	-	-	8	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	5	2	5	2	27	19	27	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782040	1	240175324	GT	G	420	PASS	FMN2	ENST00000447095	r.?	-	-	Del	upstream	D	240175324	240175326	1	18	376.027	-	-	1	1	1	FMN2|ENST00000447095|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FMN2|ENST00000447095|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	2	5	2	6	33	31	33	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782161	1	240430605	TA	T	600	PASS	FMN2	CCDS31069.2	r.?	-	-	Del	intronic	D	240430605	240430615	1	27	537.44	-	-	9	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	8	2	10	28	35	28	35	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782296	1	240720037	TA	T	660	PASS	GREM2	CCDS31070.1	r.?	-	-	Del	intronic	D	240720037	240720044	1	40	591.846	-	-	6	1	1	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	4	7	8	10	32	51	32	51	8	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782301	1	240740643	GA	G	360	PASS	GREM2	CCDS31070.1	r.?	-	-	Del	intronic	D	240740643	240740651	1	12	320.417	-	-	7	1	1	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	17	27	17	0	0	./.	1	5	1	5	19	31	19	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782342	1	240835018	GGT	G	449	PASS	-	-	-	-	-	Del	-	D	240835018	240835021	2	25	426.821	-	-	1	1	-	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	4	7	8	22	32	22	32	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782463	1	241129467	TA	T	300	PASS	RGS7	CCDS31071.1	r.?	-	-	Del	intronic	D	241129467	241129477	1	12	269.021	-	-	9	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	2	7	2	28	32	28	32	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782517	1	241238898	G	GA	420	PASS	RGS7	CCDS31071.1	r.?	-	-	Ins	intronic	I	241238898	241238908	1	18	369.404	-	-	9	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	12	12	0	0	./.	5	2	7	3	38	23	38	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782650	1	241543771	TA	T	360	PASS	-	-	-	-	-	Del	-	D	241543771	241543779	1	15	322.825	-	-	7	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	4	3	6	32	37	32	37	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782711	1	241739527	AT	A	300	PASS	KMO	CCDS1618.1	r.?	-	-	Del	intronic	D	241739527	241739534	1	12	269.021	-	-	6	1	1	KMO|CCDS1618.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KMO|CCDS1618.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	3	3	26	26	26	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782723	1	241761548	GT	G	480	PASS	KMO	CCDS1618.1	r.?	-	-	Del	downstream	D	241761548	241761557	1	24	429.831	-	-	8	1	1	KMO|CCDS1618.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OPN3|CCDS31072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	3	8	5	39	22	39	22	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782814	1	241974671	CT	C	420	PASS	-	-	-	-	-	Del	-	D	241974671	241974680	1	20	375.425	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	8	4	34	32	34	32	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759782933	1	242151586	CA	C	300	PASS	-	-	-	-	-	Del	-	D	242151586	242151594	1	12	269.021	-	-	7	1	-	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	4	2	28	20	28	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783159	1	242593331	AT	A	300	PASS	PLD5	CCDS1621.1	r.?	-	-	Del	intronic	D	242593331	242593338	1	12	269.021	-	-	6	1	1	PLD5|CCDS1621.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	3	4	3	33	28	33	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783310	1	242992183	TA	T	300	PASS	-	-	-	-	-	Del	-	D	242992183	242992192	1	12	267.817	-	-	8	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	2	3	4	4	21	34	21	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783361	1	243120305	CA	C	269	PASS	-	-	-	-	-	Del	-	D	243120305	243120315	1	12	269.021	-	-	9	1	-	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	3	3	6	42	22	42	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783402	1	243213062	AC	A	250	PASS	-	-	-	-	-	Del	-	D	243213062	243213068	1	10	268.419	-	-	5	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	1	7	1	34	22	34	22	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783483	1	243465059	AG	A	600	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Del	intronic	D	243465059	243465062	1	35	538.042	-	-	2	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	16	5	16	0	0	./.	6	4	8	4	32	26	32	26	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783513	1	243557449	CT	C	360	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Del	intronic	D	243557449	243557458	1	16	322.825	-	-	8	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	3	3	31	22	31	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783521	1	243577103	GT	G	360	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Del	intronic	D	243577103	243577111	1	15	320.417	-	-	7	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	4	4	7	27	28	27	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783621	1	244006609	AT	A	300	PASS	AKT3	CCDS31077.1	r.?	-	-	Del	intronic	D	244006609	244006618	1	10	269.021	-	-	8	1	1	AKT3|CCDS31077.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AKT3|CCDS31077.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	5	1	35	16	35	16	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783635	1	244046316	TA	T	360	PASS	-	-	-	-	-	Del	-	D	244046316	244046326	1	12	322.825	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	1	7	3	27	23	27	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783636	1	244048231	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	244048231	244048238	1	18	372.415	-	-	6	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	5	2	6	5	37	34	37	34	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783780	1	244442496	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	244442496	244442504	1	12	266.01	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	2	4	27	30	27	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783819	1	244520769	T	TG	300	PASS	C1orf100	CCDS31079.1	r.?	-	-	Ins	intronic	I	244520769	244520777	1	12	266.01	-	-	7	1	1	C1orf100|CCDS31079.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C1orf100|CCDS31079.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	3	2	4	2	28	27	28	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783857	1	244571056	CA	C	269	PASS	ADSS	CCDS1624.1	r.?	-	-	Del	downstream	D	244571056	244571064	1	12	256.98	-	-	7	1	-	ADSS|CCDS1624.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ADSS|CCDS1624.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	6	3	40	23	40	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783933	1	244800257	GCT	G	300	PASS	C1orf101	CCDS44340.1	r.?	-	-	Del	intronic	D	244800257	244800268	2	10	269.021	-	-	5	1	1	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	5	1	33	28	33	28	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759783938	1	244804161	AG	A	360	PASS	C1orf101	CCDS44340.1	r.?	-	-	Del	downstream	D	244804161	244804170	1	15	322.825	-	-	8	1	-	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	12	10	12	10	0	0	./.	2	4	3	4	21	15	21	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784015	1	244947963	TA	T	362	PASS	-	-	-	-	-	Del	-	D	244947963	244947973	1	14	375.425	-	-	9	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	6	1	7	1	32	18	32	18	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784032	1	244976186	CA	C	300	PASS	-	-	-	-	-	Del	-	D	244976186	244976196	1	12	269.021	-	-	9	1	-	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	3	2	5	4	27	23	27	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784057	1	245033099	AT	A	697	PASS	-	-	-	-	-	Del	-	D	245033099	245033105	1	40	637.823	-	-	5	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	3	9	3	11	27	45	27	45	3	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784222	1	245337404	CA	C	300	PASS	KIF26B	CCDS44342.1	r.?	-	-	Del	intronic	D	245337404	245337412	1	12	269.021	-	-	7	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	3	17	31	17	31	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784238	1	245365818	TG	T	420	PASS	KIF26B	CCDS44342.1	r.?	-	-	Del	intronic	D	245365818	245365825	1	20	374.823	-	-	6	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	3	4	3	25	29	25	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784356	1	245618803	G	GA	300	PASS	KIF26B	CCDS44342.1	r.?	-	-	Ins	intronic	I	245618803	245618811	1	10	262.398	-	-	7	1	-	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	14	9	0	0	./.	1	4	1	5	25	33	25	33	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784438	1	245776748	TA	T	360	PASS	KIF26B	CCDS44342.1	r.?	-	-	Del	intronic	D	245776748	245776756	1	16	320.417	-	-	7	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	4	6	22	38	22	38	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784548	1	245991785	AT	A	360	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	245991785	245991795	1	16	322.825	-	-	9	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	3	3	4	22	21	22	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784571	1	246019004	TA	T	360	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246019004	246019010	1	12	322.825	-	-	5	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	1	6	1	19	13	19	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784644	1	246169022	CACAA	C	265	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246169022	246169030	4	20	376.629	-	-	1	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	4	4	5	29	31	29	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784650	1	246177105	GT	G	300	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246177105	246177112	1	12	269.021	-	-	6	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	4	2	27	25	27	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784700	1	246314671	CT	C	269	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246314671	246314681	1	12	269.021	-	-	9	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	3	2	4	4	33	23	33	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784792	1	246516140	GA	G	300	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246516140	246516148	1	6	269.021	-	-	7	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	0	5	0	7	8	40	8	40	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784809	1	246555408	CT	C	360	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246555408	246555418	1	12	322.825	-	-	9	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	1	5	3	27	33	27	33	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784825	1	246598284	TA	T	300	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246598284	246598292	1	10	269.021	-	-	7	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	1	4	1	4	13	28	13	28	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759784841	1	246657661	CT	C	360	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246657661	246657671	1	12	322.223	-	-	9	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	1	5	2	5	28	41	28	41	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785083	1	247136868	TA	T	300	PASS	ZNF695	ENST00000366504	r.?	-	-	Del	intronic	D	247136868	247136876	1	12	269.021	-	-	7	1	1	ZNF695|ENST00000366504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF695|ENST00000366504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	5	4	34	28	34	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785102	1	247166094	AG	A	300	PASS	ENSG00000250083	CCDS44344.1	r.?	-	-	Del	intronic	D	247166094	247166103	1	12	263.602	-	-	8	1	1	ENSG00000250083|CCDS44344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000250083|CCDS44344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	6	5	42	34	42	34	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785236	1	247412473	GT	G	566	PASS	-	-	-	-	-	Del	-	D	247412473	247412483	1	36	538.042	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	5	5	5	22	23	22	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785260	1	247460254	AAC	A	360	PASS	ZNF496	CCDS1631.1	r.?	-	-	Del	downstream	D	247460254	247460258	2	15	322.825	-	-	1	1	1	ZNF496|CCDS1631.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ZNF496|CCDS1631.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	4	8	4	8	0	0	./.	4	2	6	3	28	25	28	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785382	1	247674644	CT	C	424	PASS	C1orf150	ENST00000366491	r.?	-	-	Del	intronic	D	247674644	247674654	1	42	591.846	-	-	9	1	1	C1orf150|ENST00000366491|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C1orf150|ENST00000366491|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	6	5	7	9	30	48	30	48	7	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785397	1	247698451	CA	C	420	PASS	OR2C3	CCDS1634.2	r.?	-	-	Del	upstream	D	247698451	247698459	1	14	376.629	-	-	7	1	1	OR2C3|CCDS1634.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C1orf150|ENST00000366491|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	1	6	2	6	29	33	29	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759785850	1	248867179	GT	G	420	PASS	-	-	-	-	-	Del	-	D	248867179	248867187	1	18	374.221	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	2	7	3	30	22	30	22	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786300	10	1095403	TCC	T	300	PASS	WDR37	CCDS7057.1	r.?	-	-	Del	upstream	D	1095403	1095412	2	12	269.373	-	-	8	1	1	WDR37|CCDS7057.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	WDR37|CCDS7057.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	10	5	10	0	0	./.	2	3	3	9	6	26	6	26	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786328	10	1151319	C	CA	300	PASS	WDR37	CCDS7057.1	r.?	-	-	Ins	intronic	I	1151319	1151327	1	12	266.965	-	-	7	1	1	WDR37|CCDS7057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR37|CCDS7057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	3	4	33	28	33	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786499	10	1595382	CA	C	480	PASS	ADARB2	CCDS7058.1	r.?	-	-	Del	intronic	D	1595382	1595390	1	24	427.745	-	-	7	1	1	ADARB2|CCDS7058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADARB2|CCDS7058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	3	6	3	34	22	34	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786504	10	1599963	TG	T	509	PASS	ADARB2	CCDS7058.1	r.?	-	-	Del	intronic	D	1599963	1599969	1	30	484.149	-	-	5	1	1	ADARB2|CCDS7058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADARB2|CCDS7058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	5	4	7	5	25	26	25	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786548	10	1680896	GT	G	360	PASS	ADARB2	CCDS7058.1	r.?	-	-	Del	intronic	D	1680896	1680905	1	16	323.97	-	-	8	1	1	ADARB2|CCDS7058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADARB2|CCDS7058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	5	3	25	36	25	36	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786664	10	2023191	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	2023191	2023200	1	15	320.358	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	5	2	19	26	19	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786726	10	2215973	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	2215973	2215977	1	12	320.358	-	-	3	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	1	5	2	5	14	32	14	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759786969	10	2880185	AT	A	300	PASS	ENSG00000214531	ENST00000398522	r.?	-	-	Del	intronic	D	2880185	2880194	1	12	269.975	-	-	8	1	1	ENSG00000214531|ENST00000398522|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000214531|ENST00000398522|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	4	29	27	29	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759787212	10	3514581	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	3514581	3514588	2	15	323.97	-	-	3	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	4	5	26	22	26	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759787275	10	3714782	AT	A	540	PASS	-	-	-	-	-	Del	-	D	3714782	3714792	1	18	481.74	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	8	2	8	16	27	16	27	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759787606	10	4560000	TC	T	540	PASS	-	-	-	-	-	Del	-	D	4560000	4560003	1	30	485.955	-	-	2	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	4	5	8	6	28	32	28	32	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759787624	10	4615970	CA	C	360	PASS	-	-	-	-	-	Del	-	D	4615970	4615978	1	16	323.97	-	-	7	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	3	3	4	8	22	21	22	21	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759787999	10	5581260	TGGA	T	838	PASS	-	-	-	-	-	Del	-	D	5581260	5581268	3	60	809.323	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	11	4	11	6	33	32	33	32	11	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759788238	10	6114137	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	6114137	6114145	1	35	531.521	-	-	7	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	4	6	4	7	25	34	26	34	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759788527	10	6770939	GA	G	300	PASS	-	-	-	-	-	Del	-	D	6770939	6770949	1	12	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	3	2	5	5	37	31	37	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759788650	10	7019416	CA	C	300	PASS	-	-	-	-	-	Del	-	D	7019416	7019425	1	10	269.975	-	-	8	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	9	1	35	13	35	13	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759788726	10	7199034	TA	T	360	PASS	SFMBT2	CCDS31138.1	r.?	-	-	Del	downstream	D	7199034	7199040	1	16	323.97	-	-	5	1	1	SFMBT2|CCDS31138.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SFMBT2|CCDS31138.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	3	3	36	25	36	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789069	10	8103504	GGAGA	G	298	PASS	GATA3	CCDS31143.1	r.?	-	-	Del	intronic	D	8103504	8103512	4	15	323.97	-	-	3	1	1	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	4	2	6	3	29	24	29	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789502	10	9124531	TA	T	420	PASS	-	-	-	-	-	Del	-	D	9124531	9124541	1	20	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	3	6	4	40	25	40	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789505	10	9129686	TC	T	480	PASS	-	-	-	-	-	Del	-	D	9129686	9129689	1	21	431.96	-	-	2	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	6	2	7	24	34	24	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789515	10	9161543	GA	G	300	PASS	-	-	-	-	-	Del	-	D	9161543	9161550	1	12	269.975	-	-	6	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	2	3	3	3	29	18	29	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789628	10	9507192	GA	G	300	PASS	-	-	-	-	-	Del	-	D	9507192	9507200	1	6	269.975	-	-	7	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	0	6	0	23	18	23	18	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789733	10	9879586	CA	C	300	PASS	-	-	-	-	-	Del	-	D	9879586	9879596	1	10	267.567	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	2	4	21	28	21	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789782	10	10033563	CA	C	420	PASS	-	-	-	-	-	Del	-	D	10033563	10033568	1	18	377.965	-	-	4	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	5	3	5	23	22	23	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789820	10	10110078	AT	A	300	PASS	-	-	-	-	-	Del	-	D	10110078	10110086	1	6	269.975	-	-	7	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	0	5	0	5	10	19	10	19	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789838	10	10164071	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	10164071	10164080	1	16	319.153	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	11	9	0	0	./.	3	3	4	4	23	36	24	36	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789946	10	10506808	AT	A	600	PASS	-	-	-	-	-	Del	-	D	10506808	10506815	1	36	538.746	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	5	7	5	31	13	31	13	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759789981	10	10602647	GA	G	420	PASS	-	-	-	-	-	Del	-	D	10602647	10602657	1	18	373.148	-	-	9	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	5	5	6	19	29	19	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759790519	10	12115044	G	GT	269	PASS	DHTKD1	CCDS7087.1	r.?	-	-	Ins	intronic	I	12115044	12115052	1	12	266.363	-	-	7	1	1	DHTKD1|CCDS7087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DHTKD1|CCDS7087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	4	2	28	26	28	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759790562	10	12185732	CA	C	540	PASS	SEC61A2	CCDS44359.1	r.?	-	-	Del	intronic	D	12185732	12185742	1	30	484.149	-	-	9	1	1	SEC61A2|CCDS44359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC61A2|CCDS44359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	4	6	4	28	28	28	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759790587	10	12234854	GA	G	360	PASS	NUDT5	CCDS7089.1	r.?	-	-	Del	intronic	D	12234854	12234864	1	12	323.97	-	-	9	1	1	NUDT5|CCDS7089.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NUDT5|CCDS7089.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	5	1	7	2	28	5	28	5	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791071	10	13122193	AAG	A	300	PASS	CCDC3	ENST00000378839	r.?	-	-	Del	intronic	D	13122193	13122212	2	10	269.975	-	-	9	1	1	CCDC3|ENST00000378839|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC3|ENST00000378839|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	1	4	1	6	11	25	11	25	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791229	10	13385813	CA	C	600	PASS	SEPHS1	CCDS7098.1	r.?	-	-	Del	intronic	D	13385813	13385823	1	35	539.95	-	-	9	1	1	SEPHS1|CCDS7098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPHS1|CCDS7098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	4	8	5	26	23	26	23	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791301	10	13570079	CG	C	329	PASS	BEND7	ENST00000396900	r.?	-	-	Del	intronic	D	13570079	13570086	1	16	322.766	-	-	6	1	1	BEND7|ENST00000396900|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BEND7|ENST00000396900|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	3	9	3	0	0	./.	3	3	5	5	31	33	31	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791360	10	13719612	CT	C	300	PASS	FRMD4A	CCDS7101.1	r.?	-	-	Del	intronic	D	13719612	13719618	1	10	269.975	-	-	5	1	1	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	1	4	3	9	29	34	29	34	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791361	10	13722881	TA	T	300	PASS	FRMD4A	CCDS7101.1	r.?	-	-	Del	intronic	D	13722881	13722891	1	10	268.771	-	-	9	1	1	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	4	1	4	1	25	10	25	10	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791394	10	13770210	AT	A	509	PASS	FRMD4A	CCDS7101.1	r.?	-	-	Del	intronic	D	13770210	13770220	1	30	485.955	-	-	9	1	1	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	4	5	5	5	23	26	23	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791493	10	13984941	GC	G	600	PASS	FRMD4A	CCDS7101.1	r.?	-	-	Del	intronic	D	13984941	13984943	1	35	538.144	-	-	1	1	1	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	4	6	6	6	22	33	22	33	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791695	10	14540934	TG	T	480	PASS	-	-	-	-	-	Del	-	D	14540934	14540943	1	24	431.96	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	5	4	5	18	16	18	16	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791734	10	14619499	TA	T	420	PASS	FAM107B	CCDS7102.1	r.?	-	-	Del	intronic	D	14619499	14619509	1	14	377.965	-	-	9	1	1	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	6	1	10	4	29	33	29	33	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791754	10	14677641	C	CT	360	PASS	FAM107B	CCDS7102.1	r.?	-	-	Ins	intronic	I	14677641	14677649	1	15	320.358	-	-	7	1	1	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	4	2	6	30	31	32	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759791785	10	14735653	GT	G	420	PASS	FAM107B	CCDS7102.1	r.?	-	-	Del	intronic	D	14735653	14735662	1	14	376.761	-	-	8	1	1	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	1	6	1	7	19	30	19	30	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759792154	10	15783353	AT	A	360	PASS	-	-	-	-	-	Del	-	D	15783353	15783363	1	15	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	7	5	29	26	29	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759792378	10	16456017	A	AG	509	PASS	-	-	-	-	-	Ins	-	I	16456017	16456023	1	28	480.536	-	-	5	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	6	4	7	19	41	20	41	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759792417	10	16523356	TG	T	480	PASS	PTER	CCDS7111.1	r.?	-	-	Del	intronic	D	16523356	16523362	1	21	431.96	-	-	5	1	1	PTER|CCDS7111.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTER|CCDS7111.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	6	2	6	2	31	26	31	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759792459	10	16673480	GA	G	420	PASS	RSU1	CCDS7112.1	r.?	-	-	Del	intronic	D	16673480	16673487	1	20	376.761	-	-	6	1	1	RSU1|CCDS7112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSU1|CCDS7112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	3	7	3	23	17	23	17	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759792891	10	18268555	GA	G	360	PASS	SLC39A12	CCDS44362.1	r.?	-	-	Del	intronic	D	18268555	18268565	1	16	323.368	-	-	9	1	1	SLC39A12|CCDS44362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC39A12|CCDS44362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	4	5	31	27	31	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793004	10	18543384	TCTC	T	360	PASS	CACNB2	CCDS7127.1	r.?	-	-	Del	intronic	D	18543384	18543390	3	7	323.97	-	-	1	1	1	CACNB2|CCDS7127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNB2|CCDS7127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	6	0	6	0	24	30	24	30	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793043	10	18646581	CA	C	360	PASS	CACNB2	CCDS7128.1	r.?	-	-	Del	intronic	D	18646581	18646589	1	15	323.97	-	-	7	1	1	CACNB2|CCDS7128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNB2|CCDS7128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	6	3	24	33	24	33	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793370	10	19448287	GT	G	480	PASS	-	-	-	-	-	Del	-	D	19448287	19448295	1	9	428.95	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	8	0	9	1	25	43	25	43	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793398	10	19569337	GC	G	360	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	19569337	19569342	1	15	323.97	-	-	4	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	4	2	5	2	33	24	33	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793421	10	19648605	GA	G	480	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	19648605	19648615	1	24	431.96	-	-	9	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	5	3	7	13	32	13	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793448	10	19710727	CT	C	360	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	19710727	19710734	1	15	323.97	-	-	6	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	2	5	21	26	21	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793817	10	20949601	TG	T	300	PASS	-	-	-	-	-	Del	-	D	20949601	20949607	1	12	269.975	-	-	5	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	5	3	33	24	33	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759793946	10	21454890	T	TA	300	PASS	NEBL	CCDS7133.1	r.?	-	-	Ins	intronic	I	21454890	21454897	1	12	266.965	-	-	6	1	1	NEBL|CCDS7133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEBL|CCDS7133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	4	8	23	8	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794152	10	22054155	AT	A	300	PASS	DNAJC1	CCDS7136.1	r.?	-	-	Del	intronic	D	22054155	22054165	1	12	268.169	-	-	9	1	1	DNAJC1|CCDS7136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC1|CCDS7136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	4	18	17	18	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794185	10	22186294	GA	G	300	PASS	DNAJC1	CCDS7136.1	r.?	-	-	Del	intronic	D	22186294	22186303	1	12	269.975	-	-	8	1	1	DNAJC1|CCDS7136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC1|CCDS7136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	2	3	2	3	27	25	27	25	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794193	10	22224053	GA	G	360	PASS	DNAJC1	CCDS7136.1	r.?	-	-	Del	intronic	D	22224053	22224062	1	15	323.368	-	-	8	1	1	DNAJC1|CCDS7136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC1|CCDS7136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	2	4	2	4	11	21	11	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794243	10	22486847	CG	C	300	PASS	ENSG00000224369	ENST00000412505	r.?	-	-	Del	intronic	D	22486847	22486854	1	6	268.771	-	-	6	1	1	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	0	5	0	7	0	12	0	12	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794247	10	22511592	T	TTG	300	PASS	ENSG00000224369	ENST00000412505	r.?	-	-	Ins	intronic	I	22511592	22511610	2	12	263.954	-	-	8	1	1	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	2	4	37	22	38	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794444	10	23308787	CT	C	360	PASS	ARMC3	CCDS7142.1	r.?	-	-	Del	intronic	D	23308787	23308793	1	16	321.562	-	-	5	1	1	ARMC3|CCDS7142.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARMC3|CCDS7142.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	3	8	4	36	23	36	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794489	10	23460264	TC	T	480	PASS	-	-	-	-	-	Del	-	D	23460264	23460272	1	21	431.96	-	-	7	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	6	2	7	23	23	23	23	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794644	10	24124862	TC	T	360	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Del	intronic	D	24124862	24124869	1	12	323.97	-	-	6	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	1	5	2	5	8	15	8	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794671	10	24205077	GA	G	360	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Del	intronic	D	24205077	24205084	1	16	322.766	-	-	6	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	4	6	27	40	27	40	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759794691	10	24263587	C	CA	300	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Ins	intronic	I	24263587	24263594	1	12	266.363	-	-	6	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	5	2	33	29	33	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795212	10	25732182	TA	T	300	PASS	GPR158	CCDS31166.1	r.?	-	-	Del	intronic	D	25732182	25732191	1	10	269.975	-	-	8	1	1	GPR158|CCDS31166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR158|CCDS31166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	1	4	2	5	10	26	10	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795261	10	25866542	A	AT	360	PASS	GPR158	CCDS31166.1	r.?	-	-	Ins	intronic	I	25866542	25866548	1	15	320.358	-	-	5	1	1	GPR158|CCDS31166.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR158|CCDS31166.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	4	5	23	24	23	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795290	10	25965343	TAG	T	420	PASS	-	-	-	-	-	Del	-	D	25965343	25965357	2	20	377.965	-	-	6	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	3	6	6	24	27	24	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795296	10	25990403	CT	C	600	PASS	-	-	-	-	-	Del	-	D	25990403	25990412	1	36	539.348	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	5	6	9	29	39	29	39	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795337	10	26062811	TG	T	314	PASS	-	-	-	-	-	Del	-	D	26062811	26062818	1	18	377.965	-	-	6	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	5	2	8	23	27	23	27	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795345	10	26121999	AT	A	300	PASS	-	-	-	-	-	Del	-	D	26121999	26122009	1	12	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	5	2	27	10	27	10	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795529	10	26517208	ACT	A	300	PASS	GAD2	CCDS7149.1	r.?	-	-	Del	intronic	D	26517208	26517213	2	10	269.975	-	-	2	1	1	GAD2|CCDS7149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAD2|CCDS7149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	2	5	19	27	19	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795565	10	26653870	TA	T	300	PASS	-	-	-	-	-	Del	-	D	26653870	26653879	1	12	269.975	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	2	5	27	25	27	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795747	10	27089552	CA	C	420	PASS	ABI1	CCDS7150.1	r.?	-	-	Del	intronic	D	27089552	27089560	1	20	376.159	-	-	7	1	1	ABI1|CCDS7150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABI1|CCDS7150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	5	3	25	20	25	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795825	10	27284417	TA	T	480	PASS	ANKRD26	ENST00000342931	r.?	-	-	Del	intronic	D	27284417	27284425	1	16	431.358	-	-	7	1	1	ANKRD26|ENST00000342931|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD26|ENST00000342931|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	7	1	7	1	27	25	27	25	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795833	10	27307426	CA	C	389	PASS	ANKRD26	CCDS41499.1	r.?	-	-	Del	intronic	D	27307426	27307436	1	20	377.965	-	-	9	1	1	ANKRD26|CCDS41499.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD26|CCDS41499.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	4	3	5	11	23	11	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795912	10	27438476	CA	C	300	PASS	YME1L1	CCDS7152.1	r.?	-	-	Del	intronic	D	27438476	27438483	1	12	269.975	-	-	6	1	1	YME1L1|CCDS7152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YME1L1|CCDS7152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	3	2	4	3	16	29	16	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759795978	10	27534411	T	TA	360	PASS	ACBD5	CCDS44368.1	r.?	-	-	Ins	upstream	I	27534411	27534420	1	15	319.153	-	-	8	1	1	ACBD5|CCDS44368.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ACBD5|CCDS44368.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	5	11	32	11	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796234	10	28290632	T	TC	360	PASS	ARMC4	CCDS7157.1	r.?	-	-	Ins	upstream	I	28290632	28290640	1	16	320.358	-	-	7	1	1	ARMC4|CCDS7157.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ARMC4|CCDS7157.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	13	7	13	0	0	./.	3	3	3	4	11	24	11	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796304	10	28488709	A	AT	457	PASS	MPP7	CCDS7158.1	r.?	-	-	Ins	intronic	I	28488709	28488719	1	24	427.143	-	-	9	1	1	MPP7|CCDS7158.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MPP7|CCDS7158.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	5	5	5	30	23	30	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796439	10	28746612	AT	A	360	PASS	-	-	-	-	-	Del	-	D	28746612	28746621	1	15	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	6	2	28	28	28	28	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796458	10	28785005	CT	C	360	PASS	-	-	-	-	-	Del	-	D	28785005	28785015	1	15	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	4	2	21	28	21	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796535	10	28957481	CG	C	300	PASS	-	-	-	-	-	Del	-	D	28957481	28957488	1	12	269.975	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	5	4	41	20	41	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796609	10	29079094	TA	T	360	PASS	-	-	-	-	-	Del	-	D	29079094	29079104	1	16	322.164	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	6	3	29	25	29	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759796848	10	29553606	C	CA	531	PASS	-	-	-	-	-	Ins	-	I	29553606	29553614	1	32	533.929	-	-	7	1	-	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	7	3	7	5	38	36	38	36	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797003	10	29919679	GA	G	480	PASS	SVIL	CCDS7164.1	r.?	-	-	Del	intronic	D	29919679	29919688	1	25	430.756	-	-	8	1	1	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	4	5	5	29	24	29	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797023	10	29964826	TAAGA	T	358	PASS	SVIL	CCDS7164.1	r.?	-	-	Del	intronic	D	29964826	29964834	4	18	377.965	-	-	1	1	1	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	2	6	4	25	33	25	33	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797040	10	30006212	GT	G	300	PASS	SVIL	CCDS7164.1	r.?	-	-	Del	intronic	D	30006212	30006221	1	12	269.975	-	-	8	1	1	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	2	3	3	13	8	13	8	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797176	10	30393653	TA	T	360	PASS	AL160060.2	ENST00000502624	r.?	-	-	Del	intronic	D	30393653	30393661	1	15	322.766	-	-	7	1	1	AL160060.2|ENST00000502624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL160060.2|ENST00000502624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	4	2	5	25	29	25	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797281	10	30624258	CA	C	420	PASS	MTPAP	CCDS7165.1	r.?	-	-	Del	intronic	D	30624258	30624266	1	14	377.363	-	-	7	1	1	MTPAP|CCDS7165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTPAP|CCDS7165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	1	6	2	8	13	32	13	32	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797293	10	30662488	TA	T	300	PASS	-	-	-	-	-	Del	-	D	30662488	30662498	1	12	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	2	3	3	4	24	33	24	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797361	10	30802943	TA	T	360	PASS	-	-	-	-	-	Del	-	D	30802943	30802952	1	15	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	4	2	6	2	18	8	18	8	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797596	10	31390567	CT	C	600	PASS	-	-	-	-	-	Del	-	D	31390567	31390577	1	32	539.95	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	7	3	9	5	34	21	34	21	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797659	10	31593803	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	31593803	31593812	1	18	479.934	-	-	8	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	1	8	1	8	2	36	2	36	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797701	10	31889176	AT	A	360	PASS	-	-	-	-	-	Del	-	D	31889176	31889185	1	15	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	4	2	4	3	30	24	30	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759797917	10	32382881	AT	A	480	PASS	-	-	-	-	-	Del	-	D	32382881	32382883	1	21	431.358	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	6	4	7	26	36	26	36	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798084	10	32740881	GC	G	300	PASS	CCDC7	CCDS7173.1	r.?	-	-	Del	intronic	D	32740881	32740887	1	12	269.975	-	-	5	1	1	CCDC7|CCDS7173.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC7|CCDS7173.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	3	3	5	19	28	19	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798212	10	33179564	CCT	C	540	PASS	-	-	-	-	-	Del	-	D	33179564	33179569	2	30	481.138	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	5	5	5	29	30	29	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798223	10	33213157	CT	C	420	PASS	ITGB1	CCDS31178.1	r.?	-	-	Del	intronic	D	33213157	33213165	1	20	377.965	-	-	7	1	1	ITGB1|CCDS31178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGB1|CCDS31178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	11	3	11	0	0	./.	3	4	3	4	18	33	18	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798537	10	34043583	GA	G	420	PASS	-	-	-	-	-	Del	-	D	34043583	34043588	1	20	377.965	-	-	4	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	4	4	5	21	23	21	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798613	10	34253636	GA	G	300	PASS	-	-	-	-	-	Del	-	D	34253636	34253644	1	10	265.761	-	-	7	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	1	4	2	5	21	20	21	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798678	10	34550204	T	TA	269	PASS	PARD3	CCDS7178.1	r.?	-	-	Ins	intronic	I	34550204	34550213	1	12	266.965	-	-	8	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	16	16	0	0	./.	2	3	4	4	34	23	34	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798713	10	34659125	GA	G	420	PASS	PARD3	CCDS7178.1	r.?	-	-	Del	intronic	D	34659125	34659134	1	20	377.965	-	-	8	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	4	4	4	24	23	24	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798742	10	34731493	TA	T	600	PASS	PARD3	CCDS7178.1	r.?	-	-	Del	intronic	D	34731493	34731503	1	36	539.95	-	-	9	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	5	5	10	8	35	24	35	24	10	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798788	10	34866601	GA	G	360	PASS	PARD3	CCDS7178.1	r.?	-	-	Del	intronic	D	34866601	34866610	1	15	323.97	-	-	8	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	4	2	21	22	21	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798902	10	35115574	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	35115574	35115583	1	16	319.153	-	-	8	1	1	-	-	./.	0	0	0	0	17	18	18	19	0	0	./.	3	3	4	6	26	22	26	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759798942	10	35189682	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	35189682	35189692	1	10	265.158	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	1	4	2	6	25	26	25	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799068	10	35553408	GT	G	360	PASS	CCNY	CCDS7190.1	r.?	-	-	Del	intronic	D	35553408	35553415	1	16	323.97	-	-	6	1	1	CCNY|CCDS7190.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCNY|CCDS7190.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	6	3	30	8	30	8	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799138	10	35784631	TG	T	420	PASS	CCNY	CCDS7189.1	r.?	-	-	Del	intronic	D	35784631	35784638	1	18	377.965	-	-	6	1	1	CCNY|CCDS7189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCNY|CCDS7189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	2	5	2	5	25	26	25	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799341	10	36347877	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	36347877	36347887	1	16	319.755	-	-	9	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	3	3	4	17	24	17	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799503	10	36910613	CT	C	360	PASS	-	-	-	-	-	Del	-	D	36910613	36910623	1	15	322.766	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	3	2	23	18	23	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799544	10	37028320	CT	C	300	PASS	-	-	-	-	-	Del	-	D	37028320	37028330	1	6	268.771	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	0	5	3	7	9	19	9	19	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799648	10	37305048	TTCTC	T	449	PASS	-	-	-	-	-	Del	-	D	37305048	37305058	4	24	431.96	-	-	4	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	5	3	7	21	30	21	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799707	10	37613860	T	TA	396	PASS	-	-	-	-	-	Ins	-	I	37613860	37613863	1	20	373.148	-	-	2	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	4	3	4	4	21	28	21	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799839	10	38038910	CT	C	360	PASS	-	-	-	-	-	Del	-	D	38038910	38038919	1	15	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	2	5	3	33	20	33	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799853	10	38066129	CA	C	360	PASS	-	-	-	-	-	Del	-	D	38066129	38066138	1	16	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	3	5	7	24	35	24	35	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759799999	10	38300561	A	AT	480	PASS	ZNF33A	CCDS44372.1	r.?	-	-	Ins	intronic	I	38300561	38300570	1	24	425.939	-	-	8	1	1	ZNF33A|CCDS44372.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF33A|CCDS44372.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	5	3	5	5	24	35	25	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801661	10	42859119	CT	C	300	PASS	-	-	-	-	-	Del	-	D	42859119	42859127	1	12	269.975	-	-	7	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801682	10	42931539	AC	A	348	PASS	CCNYL2	ENST00000345581	r.?	-	-	Del	intronic	D	42931539	42931545	1	24	485.955	-	-	5	1	1	CCNYL2|ENST00000345581|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCNYL2|ENST00000345581|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	7	2	10	2	34	22	34	22	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801733	10	43101378	TA	T	300	PASS	ZNF33B	CCDS7198.1	r.?	-	-	Del	intronic	D	43101378	43101388	1	12	269.975	-	-	9	1	1	ZNF33B|CCDS7198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF33B|CCDS7198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	4	4	19	19	19	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801754	10	43152608	TG	T	300	PASS	-	-	-	-	-	Del	-	D	43152608	43152617	1	10	269.373	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	4	2	5	19	21	19	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801844	10	43596696	TG	T	300	PASS	RET	CCDS7200.1	r.?	-	-	Del	intronic	D	43596696	43596704	1	10	269.975	-	-	7	1	1	RET|CCDS7200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RET|CCDS7200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	1	5	13	29	13	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801846	10	43599968	CA	C	300	PASS	RET	CCDS7200.1	r.?	-	-	Del	intronic	D	43599968	43599978	1	12	269.975	-	-	9	1	1	RET|CCDS7200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RET|CCDS7200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	2	4	24	26	24	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759801919	10	43813510	GA	G	300	PASS	-	-	-	-	-	Del	-	D	43813510	43813520	1	12	269.373	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	4	3	28	26	28	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802099	10	44126921	TA	T	300	PASS	-	-	-	-	-	Del	-	D	44126921	44126930	1	6	266.965	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	5	0	6	2	23	2	23	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802281	10	44954859	TA	T	420	PASS	-	-	-	-	-	Del	-	D	44954859	44954868	1	20	377.965	-	-	8	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	3	4	5	4	25	32	25	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802306	10	45091887	CAA	C	251	PASS	-	-	-	-	-	Del	-	D	45091887	45091891	2	12	269.975	-	-	3	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	3	2	3	4	15	29	15	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802324	10	45277011	CA	C	480	PASS	-	-	-	-	-	Del	-	D	45277011	45277020	1	24	431.96	-	-	8	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	5	3	5	5	21	26	21	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802387	10	45577489	CA	C	300	PASS	-	-	-	-	-	Del	-	D	45577489	45577497	1	12	265.761	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	4	2	30	21	30	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802418	10	45711395	TA	T	420	PASS	-	-	-	-	-	Del	-	D	45711395	45711405	1	18	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	2	7	3	30	24	30	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802479	10	45848510	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	45848510	45848517	1	6	266.965	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	15	0	0	./.	0	5	0	5	25	16	25	16	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802643	10	46984688	GT	G	300	PASS	-	-	-	-	-	Del	-	D	46984688	46984698	1	10	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	4	1	8	3	71	41	71	41	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759802949	10	48785676	CA	C	298	PASS	PTPN20B	CCDS41515.1	r.?	-	-	Del	intronic	D	48785676	48785685	1	25	431.96	-	-	8	1	1	PTPN20B|CCDS41515.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN20B|CCDS41515.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	5	5	15	24	15	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803091	10	49751869	GA	G	480	PASS	ARHGAP22	CCDS7227.1	r.?	-	-	Del	intronic	D	49751869	49751879	1	21	431.96	-	-	9	1	1	ARHGAP22|CCDS7227.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP22|CCDS7227.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	6	2	11	2	28	22	28	22	11	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803143	10	50007940	G	GT	360	PASS	WDFY4	CCDS44385.1	r.?	-	-	Ins	intronic	I	50007940	50007950	1	15	310.123	-	-	9	1	1	WDFY4|CCDS44385.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDFY4|CCDS44385.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	4	4	3	27	21	27	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803164	10	50111153	TA	T	960	PASS	WDFY4	CCDS44385.1	r.?	-	-	Del	intronic	D	50111153	50111163	1	80	859.103	-	-	9	1	1	WDFY4|CCDS44385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDFY4|CCDS44385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	7	9	9	10	32	22	32	22	9	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803326	10	50634841	AC	A	420	PASS	-	-	-	-	-	Del	-	D	50634841	50634847	1	20	376.761	-	-	5	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	4	4	31	22	31	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803463	10	51030270	C	CTG	360	PASS	PARG	ENST00000402038	r.?	-	-	Ins	intronic	I	51030270	51030290	2	12	316.745	-	-	9	1	-	PARG|ENST00000402038|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARG|ENST00000402038|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	5	2	6	33	37	33	37	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803674	10	52145417	CA	C	420	PASS	SGMS1	CCDS7240.1	r.?	-	-	Del	intronic	D	52145417	52145427	1	18	377.965	-	-	9	1	1	SGMS1|CCDS7240.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SGMS1|CCDS7240.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	5	2	6	6	22	21	22	21	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803798	10	52619952	CA	C	420	PASS	A1CF	CCDS7243.1	r.?	-	-	Del	intronic	D	52619952	52619962	1	18	377.965	-	-	9	1	1	A1CF|CCDS7243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	A1CF|CCDS7243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	5	2	5	3	36	25	36	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759803811	10	52709396	TA	T	397	PASS	-	-	-	-	-	Del	-	D	52709396	52709405	1	18	376.761	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	5	2	7	12	28	12	28	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759804479	10	54882505	AT	A	600	PASS	-	-	-	-	-	Del	-	D	54882505	54882513	1	32	539.95	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	7	3	7	3	36	22	36	22	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759804641	10	55325082	TG	T	360	PASS	-	-	-	-	-	Del	-	D	55325082	55325085	1	15	323.97	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	4	3	27	20	27	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805091	10	56535663	TA	T	360	PASS	PCDH15	CCDS44404.1	r.?	-	-	Del	intronic	D	56535663	56535672	1	16	323.97	-	-	8	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	11	3	11	0	0	./.	3	3	4	5	34	22	34	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805131	10	56675064	AT	A	360	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	56675064	56675071	1	12	323.368	-	-	6	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	5	1	6	2	28	23	28	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805193	10	56840374	A	AG	360	PASS	PCDH15	ENST00000373957	r.?	-	-	Ins	intronic	I	56840374	56840377	1	15	320.358	-	-	2	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	4	2	6	2	20	25	20	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805524	10	58160634	GT	G	360	PASS	-	-	-	-	-	Del	-	D	58160634	58160644	1	16	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	3	5	4	27	19	27	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805529	10	58174745	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	58174745	58174754	1	7	319.756	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	15	12	0	0	./.	0	6	2	8	27	27	27	27	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805587	10	58378112	GA	G	540	PASS	-	-	-	-	-	Del	-	D	58378112	58378121	1	28	485.955	-	-	8	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	6	5	6	31	24	31	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805654	10	58529375	CT	C	360	PASS	-	-	-	-	-	Del	-	D	58529375	58529385	1	7	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	6	0	7	0	22	1	22	1	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805745	10	58744427	CT	C	420	PASS	-	-	-	-	-	Del	-	D	58744427	58744435	1	20	372.546	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	4	3	5	27	24	27	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805875	10	59110747	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	59110747	59110752	2	12	269.975	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	2	29	25	29	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805880	10	59169453	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	59169453	59169461	1	16	320.358	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	2	30	19	30	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759805895	10	59212773	AT	A	300	PASS	-	-	-	-	-	Del	-	D	59212773	59212778	1	12	269.975	-	-	4	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	2	3	3	3	21	23	21	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806112	10	59767678	CA	C	480	PASS	-	-	-	-	-	Del	-	D	59767678	59767684	1	24	429.552	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	3	7	5	28	24	28	24	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806167	10	59897260	CT	C	360	PASS	-	-	-	-	-	Del	-	D	59897260	59897269	1	15	323.368	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	4	3	4	19	26	19	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806173	10	59913848	GA	G	480	PASS	-	-	-	-	-	Del	-	D	59913848	59913857	1	16	431.96	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	1	7	2	9	23	33	23	33	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806257	10	60050384	T	TA	420	PASS	CISD1	CCDS7251.1	r.?	-	-	Ins	downstream	I	60050384	60050391	1	14	373.751	-	-	6	1	1	CISD1|CCDS7251.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CISD1|CCDS7251.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	10	11	10	0	0	./.	1	6	4	7	34	20	34	20	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806414	10	60476489	AT	A	287	PASS	BICC1	CCDS31206.1	r.?	-	-	Del	intronic	D	60476489	60476497	1	12	269.975	-	-	7	1	1	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	24	9	24	0	0	./.	3	2	4	3	18	26	18	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806444	10	60557584	CA	C	420	PASS	BICC1	CCDS31206.1	r.?	-	-	Del	intronic	D	60557584	60557594	1	18	377.965	-	-	9	1	1	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	2	5	2	28	27	28	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806458	10	60588184	CTATT	C	420	PASS	BICC1	CCDS31206.1	r.?	-	-	Del	intronic	D	60588184	60588191	4	14	377.965	-	-	1	1	1	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	1	6	2	11	26	26	26	26	2	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806466	10	60605926	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	60605926	60605931	2	12	269.975	-	-	4	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	3	22	33	22	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806514	10	60857988	TA	T	300	PASS	-	-	-	-	-	Del	-	D	60857988	60857993	1	12	269.975	-	-	4	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	3	2	5	2	26	20	26	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806521	10	60887602	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	60887602	60887610	1	12	265.761	-	-	7	1	1	-	-	./.	0	0	0	0	21	8	21	8	0	0	./.	2	3	3	3	25	12	25	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806525	10	60908423	TA	T	480	PASS	-	-	-	-	-	Del	-	D	60908423	60908426	1	24	431.96	-	-	2	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	5	4	5	20	31	20	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806823	10	61878515	CAT	C	420	PASS	ANK3	CCDS7258.1	r.?	-	-	Del	intronic	D	61878515	61878519	2	20	371.944	-	-	1	1	1	ANK3|CCDS7258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK3|CCDS7258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	3	6	7	19	7	19	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806881	10	62089563	CA	C	583	PASS	ANK3	CCDS7258.1	r.?	-	-	Del	intronic	D	62089563	62089570	1	35	539.95	-	-	6	1	1	ANK3|CCDS7258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK3|CCDS7258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	6	4	8	29	28	29	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759806963	10	62355704	CA	C	540	PASS	ANK3	ENST00000373827	r.?	-	-	Del	intronic	D	62355704	62355712	1	28	485.955	-	-	7	1	1	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	6	3	6	5	22	29	22	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807125	10	63232694	CA	C	300	PASS	-	-	-	-	-	Del	-	D	63232694	63232704	1	10	269.373	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	1	4	1	5	21	24	21	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807269	10	63784415	AT	A	360	PASS	ARID5B	CCDS31208.1	r.?	-	-	Del	intronic	D	63784415	63784425	1	16	323.97	-	-	9	1	1	ARID5B|CCDS31208.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID5B|CCDS31208.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	4	3	24	20	24	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807679	10	65043604	CA	C	360	PASS	JMJD1C	CCDS41532.1	r.?	-	-	Del	intronic	D	65043604	65043614	1	16	323.97	-	-	9	1	1	JMJD1C|CCDS41532.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JMJD1C|CCDS41532.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	3	4	30	30	30	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807725	10	65128905	T	TTC	360	PASS	JMJD1C	CCDS41532.1	r.?	-	-	Ins	intronic	I	65128905	65128917	2	15	316.745	-	-	5	1	1	JMJD1C|CCDS41532.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JMJD1C|CCDS41532.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	4	2	5	3	30	30	30	30	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807857	10	65455786	TTTG	T	360	PASS	-	-	-	-	-	Del	-	D	65455786	65455807	3	15	322.164	-	-	6	1	-	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	4	2	5	26	24	26	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807895	10	65573966	AT	A	420	PASS	-	-	-	-	-	Del	-	D	65573966	65573976	1	20	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	4	5	34	27	34	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759807912	10	65601279	CGA	C	420	PASS	-	-	-	-	-	Del	-	D	65601279	65601298	2	18	377.363	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	2	2	20	24	20	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808051	10	66225947	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	66225947	66225956	1	35	533.929	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	6	5	6	29	33	30	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808074	10	66326894	TG	T	600	PASS	-	-	-	-	-	Del	-	D	66326894	66326899	1	36	538.746	-	-	4	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	5	5	6	25	24	25	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808174	10	66677540	CCTT	C	360	PASS	-	-	-	-	-	Del	-	D	66677540	66677546	3	12	323.97	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	5	1	6	21	27	21	27	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808288	10	67061461	G	GAT	360	PASS	-	-	-	-	-	Ins	-	I	67061461	67061474	2	16	316.745	-	-	6	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	3	3	5	4	26	26	27	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808451	10	67501943	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	67501943	67501951	1	10	266.965	-	-	7	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	1	4	2	5	29	36	29	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808475	10	67643956	CT	C	300	PASS	-	-	-	-	-	Del	-	D	67643956	67643962	1	12	269.975	-	-	5	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	2	3	2	21	28	21	28	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808613	10	68160825	ATTG	A	300	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	68160825	68160834	3	10	269.975	-	-	2	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	1	4	1	4	8	24	8	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808630	10	68268362	CT	C	300	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	68268362	68268369	1	6	269.975	-	-	6	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	0	5	0	20	3	20	3	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808934	10	69141211	GA	G	420	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	69141211	69141220	1	20	377.965	-	-	8	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	3	4	7	16	24	16	24	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808942	10	69170970	C	CA	360	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Ins	intronic	I	69170970	69170978	1	15	320.358	-	-	7	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	4	2	4	22	25	22	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808980	10	69377194	AT	A	360	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	69377194	69377204	1	16	323.97	-	-	9	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	3	3	4	4	30	27	30	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759808988	10	69390561	CA	C	360	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	69390561	69390571	1	15	323.368	-	-	9	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	4	2	4	3	11	16	11	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809010	10	69495392	TA	T	300	PASS	-	-	-	-	-	Del	-	D	69495392	69495401	1	10	269.373	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	4	3	14	10	14	10	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809107	10	69663308	AT	A	420	PASS	SIRT1	CCDS7273.1	r.?	-	-	Del	intronic	D	69663308	69663318	1	14	376.761	-	-	9	1	1	SIRT1|CCDS7273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIRT1|CCDS7273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	6	1	8	1	27	22	27	22	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809284	10	70107631	GA	G	360	PASS	RUFY2	CCDS41534.1	r.?	-	-	Del	intronic	D	70107631	70107639	1	16	323.97	-	-	7	1	1	RUFY2|CCDS41534.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUFY2|CCDS41534.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	3	3	6	4	26	26	26	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809579	10	70671949	CT	C	300	PASS	DDX50	CCDS7283.1	r.?	-	-	Del	intronic	D	70671949	70671959	1	6	250.709	-	-	9	1	-	DDX50|CCDS7283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DDX50|CCDS7283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	5	0	7	0	33	8	33	8	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809651	10	70801535	CT	C	300	PASS	-	-	-	-	-	Del	-	D	70801535	70801545	1	12	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	2	3	4	4	33	32	33	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809680	10	70878118	CA	C	360	PASS	-	-	-	-	-	Del	-	D	70878118	70878128	1	15	322.164	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	4	2	5	9	22	9	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809810	10	71127578	GT	G	300	PASS	HK1	CCDS7290.1	r.?	-	-	Del	intronic	D	71127578	71127588	1	12	269.975	-	-	9	1	1	HK1|CCDS7290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HK1|CCDS7290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	3	2	5	4	23	29	23	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809892	10	71322349	CT	C	360	PASS	-	-	-	-	-	Del	-	D	71322349	71322354	1	15	323.97	-	-	4	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	2	4	6	7	22	26	22	26	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759809903	10	71375925	CT	C	360	PASS	-	-	-	-	-	Del	-	D	71375925	71375934	1	12	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	5	1	5	1	26	11	26	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810074	10	72065392	TC	T	360	PASS	LRRC20	CCDS7302.1	r.?	-	-	Del	intronic	D	72065392	72065399	1	15	323.97	-	-	6	1	1	LRRC20|CCDS7302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC20|CCDS7302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	4	4	5	20	19	20	19	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810204	10	72306168	GT	G	269	PASS	KIAA1274	CCDS31215.1	r.?	-	-	Del	intronic	D	72306168	72306177	1	12	269.975	-	-	8	1	1	KIAA1274|CCDS31215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1274|CCDS31215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	3	5	27	24	27	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810550	10	73553766	C	CT	300	PASS	CDH23	ENST00000398860	r.?	-	-	Ins	intronic	I	73553766	73553776	1	12	266.363	-	-	9	1	1	CDH23|ENST00000398860|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH23|ENST00000398860|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	18	14	0	0	./.	2	3	3	5	26	24	27	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810553	10	73564532	AT	A	300	PASS	CDH23	ENST00000398860	r.?	-	-	Del	intronic	D	73564532	73564540	1	12	269.975	-	-	7	1	1	CDH23|ENST00000398860|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH23|ENST00000398860|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	3	3	32	19	32	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810695	10	73940732	CT	C	360	PASS	ASCC1	CCDS31219.1	r.?	-	-	Del	intronic	D	73940732	73940742	1	16	323.97	-	-	9	1	1	ASCC1|CCDS31219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASCC1|CCDS31219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	3	3	4	18	18	18	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810706	10	73964017	AT	A	300	PASS	ASCC1	CCDS31219.1	r.?	-	-	Del	intronic	D	73964017	73964027	1	10	268.771	-	-	9	1	1	ASCC1|CCDS31219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASCC1|CCDS31219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	1	8	5	14	5	14	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759810987	10	74660042	A	AC	300	PASS	OIT3	CCDS7318.1	r.?	-	-	Ins	intronic	I	74660042	74660051	1	6	266.965	-	-	8	1	1	OIT3|CCDS7318.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OIT3|CCDS7318.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	0	5	0	8	14	32	15	32	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811080	10	75046223	CA	C	300	PASS	TTC18	CCDS7324.2	r.?	-	-	Del	intronic	D	75046223	75046231	1	12	269.373	-	-	7	1	-	TTC18|CCDS7324.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC18|CCDS7324.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	5	3	23	25	23	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811114	10	75199239	GA	G	420	PASS	PPP3CB	CCDS7328.1	r.?	-	-	Del	intronic	D	75199239	75199248	1	20	377.965	-	-	8	1	1	PPP3CB|CCDS7328.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP3CB|CCDS7328.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	4	4	4	33	31	33	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811122	10	75215337	CT	C	360	PASS	PPP3CB	CCDS7328.1	r.?	-	-	Del	intronic	D	75215337	75215347	1	12	323.368	-	-	9	1	1	PPP3CB|CCDS7328.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP3CB|CCDS7328.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	1	7	2	33	25	33	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811187	10	75407588	TG	T	449	PASS	SYNPO2L	CCDS44438.1	r.1971delC	c.1821delC	p.S608fs*70	Del	frameshift	D	75407588	75407595	1	25	413.898	-	-	6	1	1	SYNPO2L|CCDS44438.1|r.1971delC|c.1821delC|p.S608fs*70|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SYNPO2L|CCDS44438.1|r.1971delC|c.1821delC|p.S608fs*70|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	5	13	5	0	0	./.	4	4	6	7	27	20	27	20	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811361	10	75822826	TA	T	300	PASS	VCL	CCDS7341.1	r.?	-	-	Del	intronic	D	75822826	75822835	1	12	269.975	-	-	8	1	1	VCL|CCDS7341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VCL|CCDS7341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	4	2	27	17	27	17	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811381	10	75884211	CTG	C	420	PASS	AP3M1	CCDS7342.1	r.1090_1091delCA	c.1081_1082delCA	p.Q361fs*17	Del	frameshift	D	75884211	75884215	2	18	377.965	-	-	1	1	1	AP3M1|CCDS7342.1|r.1090_1091delCA|c.1081_1082delCA|p.Q361fs*17|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	AP3M1|CCDS7342.1|r.1090_1091delCA|c.1081_1082delCA|p.Q361fs*17|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	11	5	11	0	0	./.	2	5	2	7	25	29	25	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811504	10	76105984	GT	G	420	PASS	ADK	CCDS7344.1	r.?	-	-	Del	intronic	D	76105984	76105994	1	8	377.965	-	-	9	1	1	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	0	7	2	9	8	25	8	25	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811535	10	76160651	CCTT	C	360	PASS	ADK	CCDS7344.1	r.?	-	-	Del	intronic	D	76160651	76160662	3	15	323.97	-	-	3	1	1	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	4	2	5	16	29	16	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811748	10	76832950	CCT	C	420	PASS	-	-	-	-	-	Del	-	D	76832950	76832964	2	20	377.965	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	4	3	30	26	30	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811890	10	77238462	AT	A	300	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	intronic	D	77238462	77238470	1	12	269.975	-	-	7	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	19	5	19	0	0	./.	3	2	5	7	38	44	38	44	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759811990	10	77629914	GA	G	360	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	77629914	77629923	1	16	323.97	-	-	8	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	3	3	3	19	19	19	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812042	10	77872021	TG	T	300	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	77872021	77872028	1	10	269.975	-	-	6	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	5	2	28	23	28	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812194	10	78427546	CA	C	480	PASS	-	-	-	-	-	Del	-	D	78427546	78427556	1	16	431.96	-	-	9	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	1	7	2	8	8	24	8	24	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812266	10	78704741	GA	G	360	PASS	KCNMA1	CCDS7352.1	r.?	-	-	Del	intronic	D	78704741	78704751	1	16	320.358	-	-	9	1	1	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	3	4	28	23	28	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812400	10	79119882	TAAG	T	480	PASS	KCNMA1	CCDS7352.1	r.?	-	-	Del	intronic	D	79119882	79119890	3	24	431.96	-	-	2	1	1	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	5	3	7	3	26	23	26	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812595	10	79734738	C	CAT	480	PASS	POLR3A	CCDS7354.1	r.?	-	-	Ins	downstream	I	79734738	79734748	2	21	422.327	-	-	4	1	1	POLR3A|CCDS7354.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	POLR3A|CCDS7354.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	9	12	9	12	0	0	./.	2	6	3	6	35	29	35	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812634	10	79864629	CAGA	C	266	PASS	-	-	-	-	-	Del	-	D	79864629	79864639	3	18	377.965	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	3	8	23	33	23	33	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812938	10	81358767	CA	C	300	PASS	-	-	-	-	-	Del	-	D	81358767	81358775	1	12	269.975	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	5	4	25	14	25	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759812942	10	81389277	CTGAT	C	356	PASS	-	-	-	-	-	Del	-	D	81389277	81389284	4	25	431.96	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	4	5	4	24	30	24	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759813360	10	82835951	AT	A	360	PASS	-	-	-	-	-	Del	-	D	82835951	82835961	1	15	323.368	-	-	9	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	4	2	5	2	18	2	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759813362	10	82839615	AT	A	480	PASS	-	-	-	-	-	Del	-	D	82839615	82839625	1	24	431.96	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	5	3	5	3	18	25	18	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759813695	10	84096753	C	CT	480	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	84096753	84096763	1	24	427.143	-	-	9	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	5	5	6	32	24	32	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814017	10	85432025	TA	T	300	PASS	-	-	-	-	-	Del	-	D	85432025	85432028	1	10	269.975	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	1	4	1	5	13	28	13	28	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814128	10	85756984	CA	C	420	PASS	-	-	-	-	-	Del	-	D	85756984	85756994	1	18	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	2	9	3	26	27	26	27	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814255	10	86239172	CA	C	300	PASS	FAM190B	CCDS31235.1	r.?	-	-	Del	intronic	D	86239172	86239178	1	12	269.975	-	-	5	1	1	FAM190B|CCDS31235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190B|CCDS31235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	3	15	18	15	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814601	10	87802846	CA	C	360	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	87802846	87802856	1	15	323.97	-	-	9	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	4	2	6	4	23	34	23	34	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814650	10	88154750	CA	C	720	PASS	-	-	-	-	-	Del	-	D	88154750	88154760	1	48	647.338	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	7	5	7	16	32	16	32	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814781	10	88455968	G	GC	360	PASS	LDB3	CCDS41544.1	r.?	-	-	Ins	intronic	I	88455968	88455976	1	12	320.358	-	-	7	1	1	LDB3|CCDS41544.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LDB3|CCDS41544.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	5	1	6	2	23	44	23	44	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814914	10	88802832	CT	C	480	PASS	AC025268.1	ENST00000513247	r.?	-	-	Del	intronic	D	88802832	88802842	1	24	431.96	-	-	9	1	1	AC025268.1|ENST00000513247|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC025268.1|ENST00000513247|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	4	9	23	25	23	25	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759814957	10	88909902	ACCT	A	322	PASS	FAM35A	CCDS7383.1	r.?	-	-	Del	intronic	D	88909902	88909915	3	15	320.358	-	-	4	1	1	FAM35A|CCDS7383.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM35A|CCDS7383.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	4	3	5	19	20	19	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815110	10	89528828	TA	T	300	PASS	ATAD1	CCDS7386.1	r.?	-	-	Del	intronic	D	89528828	89528836	1	12	269.975	-	-	7	1	1	ATAD1|CCDS7386.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATAD1|CCDS7386.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	3	22	14	22	14	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815191	10	89848151	AT	A	300	PASS	-	-	-	-	-	Del	-	D	89848151	89848159	1	10	269.975	-	-	7	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	1	7	21	18	21	18	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815231	10	90004292	TG	T	360	PASS	-	-	-	-	-	Del	-	D	90004292	90004296	1	15	323.97	-	-	3	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	2	5	2	28	28	28	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815249	10	90094471	CT	C	300	PASS	RNLS	CCDS7388.1	r.?	-	-	Del	intronic	D	90094471	90094480	1	12	269.975	-	-	8	1	1	RNLS|CCDS7388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNLS|CCDS7388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	3	4	16	22	16	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815252	10	90105126	C	CA	420	PASS	RNLS	CCDS7388.1	r.?	-	-	Ins	intronic	I	90105126	90105133	1	20	373.75	-	-	6	1	1	RNLS|CCDS7388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNLS|CCDS7388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	3	4	16	20	16	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815368	10	90619891	AC	A	480	PASS	-	-	-	-	-	Del	-	D	90619891	90619898	1	25	404.867	-	-	6	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	4	3	25	32	25	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815411	10	90751972	GA	G	480	PASS	FAS	CCDS7393.1	r.?	-	-	Del	intronic	D	90751972	90751982	1	9	431.96	-	-	9	1	1	FAS|CCDS7393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAS|CCDS7393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	0	8	1	8	10	35	10	35	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815436	10	90832520	CT	C	300	PASS	-	-	-	-	-	Del	-	D	90832520	90832527	1	12	269.975	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	4	18	26	18	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759815919	10	92538623	AT	A	480	PASS	HTR7	CCDS7408.1	r.?	-	-	Del	intronic	D	92538623	92538630	1	25	431.96	-	-	6	1	1	HTR7|CCDS7408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTR7|CCDS7408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	4	7	5	34	25	34	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816012	10	92856740	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	92856740	92856743	1	12	266.965	-	-	2	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	2	3	2	7	25	29	25	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816042	10	93005246	TG	T	360	PASS	PCGF5	CCDS7413.1	r.?	-	-	Del	intronic	D	93005246	93005254	1	15	323.97	-	-	7	1	1	PCGF5|CCDS7413.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCGF5|CCDS7413.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	4	2	7	4	28	31	28	31	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816055	10	93092134	GA	G	420	PASS	-	-	-	-	-	Del	-	D	93092134	93092143	1	20	377.965	-	-	8	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	4	4	5	32	19	32	19	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816140	10	93508045	A	AT	449	PASS	-	-	-	-	-	Ins	-	I	93508045	93508054	1	24	421.123	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	5	3	6	26	23	26	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816449	10	94288831	C	CA	360	PASS	IDE	CCDS7421.1	r.?	-	-	Ins	intronic	I	94288831	94288840	1	15	317.949	-	-	8	1	-	IDE|CCDS7421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IDE|CCDS7421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	9	14	0	0	./.	2	4	2	6	29	28	29	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816542	10	94573564	TA	T	300	PASS	-	-	-	-	-	Del	-	D	94573564	94573574	1	12	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	4	2	29	24	29	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816572	10	94647992	TA	T	389	PASS	EXOC6	CCDS31247.1	r.?	-	-	Del	intronic	D	94647992	94648002	1	20	377.965	-	-	9	1	1	EXOC6|CCDS31247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC6|CCDS31247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	4	7	4	18	6	18	6	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816664	10	94907950	TA	T	360	PASS	-	-	-	-	-	Del	-	D	94907950	94907958	1	16	323.97	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	3	6	3	30	21	30	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816716	10	94984956	CCT	C	389	PASS	-	-	-	-	-	Del	-	D	94984956	94984969	2	20	374.353	-	-	6	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	4	3	5	20	29	20	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816848	10	95257031	CT	C	600	PASS	CEP55	CCDS7428.1	r.?	-	-	Del	intronic	D	95257031	95257041	1	35	539.95	-	-	9	1	1	CEP55|CCDS7428.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CEP55|CCDS7428.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	6	6	8	29	28	29	28	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816890	10	95319730	GT	G	480	PASS	-	-	-	-	-	Del	-	D	95319730	95319738	1	24	431.96	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	3	6	5	27	25	27	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759816984	10	95615176	CT	C	420	PASS	-	-	-	-	-	Del	-	D	95615176	95615183	1	18	377.965	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	2	5	3	30	18	30	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817195	10	96335874	CT	C	269	PASS	HELLS	CCDS7434.1	r.?	-	-	Del	intronic	D	96335874	96335884	1	12	263.352	-	-	9	1	1	HELLS|CCDS7434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HELLS|CCDS7434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	3	2	7	2	26	18	26	18	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817229	10	96546600	AT	A	360	PASS	CYP2C19	CCDS7436.1	r.?	-	-	Del	intronic	D	96546600	96546609	1	15	323.97	-	-	8	1	1	CYP2C19|CCDS7436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP2C19|CCDS7436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	2	4	3	30	18	30	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817230	10	96548950	GT	G	300	PASS	CYP2C19	CCDS7436.1	r.?	-	-	Del	intronic	D	96548950	96548960	1	12	269.975	-	-	9	1	1	CYP2C19|CCDS7436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP2C19|CCDS7436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	3	2	6	4	37	26	37	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817256	10	96697799	AT	A	300	PASS	CYP2C9	CCDS7437.1	r.?	-	-	Del	upstream	D	96697799	96697808	1	12	269.975	-	-	8	1	1	CYP2C9|CCDS7437.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CYP2C9|CCDS7437.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	5	9	5	0	0	./.	3	2	6	2	19	25	19	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817338	10	96962518	TA	T	300	PASS	C10orf129	CCDS7440.2	r.?	-	-	Del	intronic	D	96962518	96962528	1	10	269.373	-	-	9	1	1	C10orf129|CCDS7440.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf129|CCDS7440.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	1	4	3	5	12	27	12	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817409	10	97110956	CA	C	420	PASS	SORBS1	CCDS31255.1	r.2572+9delu	c.2382+9delt	p.?	Del	splice region	D	97110956	97110961	1	20	377.965	-	-	4	1	1	SORBS1|CCDS31255.1|r.2572+9delu|c.2382+9delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	SORBS1|CCDS31255.1|r.2572+9delu|c.2382+9delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	3	4	21	16	21	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817423	10	97139504	G	GT	720	PASS	SORBS1	CCDS31255.1	r.?	-	-	Ins	intronic	I	97139504	97139509	1	40	640.715	-	-	4	1	1	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	9	3	9	4	32	24	33	24	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817458	10	97224178	TA	T	420	PASS	SORBS1	CCDS31255.1	r.?	-	-	Del	intronic	D	97224178	97224183	1	18	377.363	-	-	4	1	1	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	5	3	5	24	22	24	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817543	10	97446556	GT	G	480	PASS	TCTN3	CCDS31258.2	r.?	-	-	Del	intronic	D	97446556	97446561	1	24	431.358	-	-	4	1	1	TCTN3|CCDS31258.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCTN3|CCDS31258.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	5	3	8	24	28	24	28	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817550	10	97480798	G	GT	308	PASS	ENTPD1	ENST00000453258	r.?	-	-	Ins	intronic	I	97480798	97480808	1	24	427.143	-	-	9	1	1	ENTPD1|ENST00000453258|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENTPD1|ENST00000453258|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	3	5	3	35	30	35	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817714	10	98046751	GT	G	420	PASS	-	-	-	-	-	Del	-	D	98046751	98046761	1	20	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	5	6	23	26	23	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817769	10	98277148	AC	A	300	PASS	TLL2	CCDS7449.1	r.?	-	-	Del	upstream	D	98277148	98277154	1	12	269.975	-	-	5	1	1	TLL2|CCDS7449.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TLL2|CCDS7449.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	3	2	22	14	22	14	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759817827	10	98424131	CCTCT	C	420	PASS	PIK3AP1	CCDS31259.1	r.?	-	-	Del	intronic	D	98424131	98424139	4	20	377.363	-	-	3	1	1	PIK3AP1|CCDS31259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3AP1|CCDS31259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	4	3	6	3	18	22	18	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818047	10	99014496	TA	T	300	PASS	ARHGAP19	CCDS7454.2	r.?	-	-	Del	intronic	D	99014496	99014502	1	10	266.965	-	-	5	1	1	ARHGAP19|CCDS7454.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP19|CCDS7454.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	1	4	18	27	18	27	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818172	10	99307330	CT	C	300	PASS	UBTD1	CCDS7465.1	r.?	-	-	Del	intronic	D	99307330	99307340	1	12	268.169	-	-	9	1	-	UBTD1|CCDS7465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBTD1|CCDS7465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	9	5	38	34	38	34	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818343	10	99864424	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	99864424	99864429	1	10	266.965	-	-	4	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	1	4	1	21	20	21	20	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818384	10	100007091	AG	A	389	PASS	LOXL4	CCDS7473.1	r.?	-	-	Del	downstream	D	100007091	100007097	1	18	377.965	-	-	5	1	1	LOXL4|CCDS7473.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	LOXL4|CCDS7473.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	13	6	13	6	0	0	./.	5	2	7	3	31	19	31	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818458	10	100278306	TG	T	480	PASS	HPSE2	CCDS7477.1	r.?	-	-	Del	intronic	D	100278306	100278308	1	25	431.96	-	-	1	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	4	4	4	5	22	29	22	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818483	10	100334209	TA	T	720	PASS	HPSE2	CCDS7477.1	r.?	-	-	Del	intronic	D	100334209	100334215	1	48	647.94	-	-	5	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	7	5	8	6	28	23	28	23	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818573	10	100592484	TA	T	660	PASS	HPSE2	CCDS7477.1	r.?	-	-	Del	intronic	D	100592484	100592492	1	40	593.343	-	-	7	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	7	4	7	5	31	33	31	33	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818652	10	100877889	CA	C	480	PASS	HPSE2	CCDS7477.1	r.?	-	-	Del	intronic	D	100877889	100877899	1	24	431.96	-	-	9	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	3	5	4	6	17	29	17	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818665	10	100911502	T	TA	413	PASS	HPSE2	CCDS7477.1	r.?	-	-	Ins	intronic	I	100911502	100911512	1	20	368.934	-	-	9	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	18	0	0	./.	4	3	5	5	33	24	34	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818690	10	100969283	GA	G	300	PASS	HPSE2	CCDS7477.1	r.?	-	-	Del	intronic	D	100969283	100969292	1	12	269.975	-	-	8	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	2	4	24	20	24	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818696	10	100984534	C	CA	269	PASS	HPSE2	CCDS7477.1	r.?	-	-	Ins	intronic	I	100984534	100984543	1	10	266.965	-	-	8	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	0	6	7	32	7	32	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759818964	10	101626340	TTAGTC	T	360	PASS	-	-	-	-	-	Del	-	D	101626340	101626349	5	15	322.164	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	4	2	5	2	32	22	32	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819197	10	102395124	AT	A	360	PASS	-	-	-	-	-	Del	-	D	102395124	102395132	1	12	323.368	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	2	9	28	26	28	26	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819268	10	102675306	GT	G	360	PASS	FAM178A	CCDS7500.1	r.?	-	-	Del	intronic	D	102675306	102675316	1	16	323.97	-	-	9	1	1	FAM178A|CCDS7500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM178A|CCDS7500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	21	6	21	0	0	./.	3	3	3	4	9	35	9	35	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819269	10	102677314	CT	C	300	PASS	FAM178A	CCDS7500.1	r.?	-	-	Del	intronic	D	102677314	102677324	1	10	269.975	-	-	9	1	1	FAM178A|CCDS7500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM178A|CCDS7500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	1	19	16	19	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819361	10	102998488	GT	G	360	PASS	-	-	-	-	-	Del	-	D	102998488	102998498	1	16	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	4	3	22	21	22	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819521	10	103391208	TA	T	297	PASS	FBXW4	CCDS31271.1	r.?	-	-	Del	intronic	D	103391208	103391217	1	12	269.975	-	-	8	1	1	FBXW4|CCDS31271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW4|CCDS31271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	3	4	28	17	28	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819532	10	103405497	A	AT	360	PASS	FBXW4	CCDS31271.1	r.?	-	-	Ins	intronic	I	103405497	103405506	1	12	319.755	-	-	8	1	1	FBXW4|CCDS31271.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXW4|CCDS31271.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	16	0	0	./.	5	1	6	4	30	17	30	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819680	10	103838372	TA	T	360	PASS	-	-	-	-	-	Del	-	D	103838372	103838382	1	16	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	3	3	6	18	28	18	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759819793	10	104186820	CA	C	480	PASS	FBXL15	CCDS31273.1	r.?	-	-	Del	downstream	D	104186820	104186830	1	24	431.96	-	-	9	1	1	FBXL15|CCDS31273.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CUEDC2|CCDS41566.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	5	3	7	6	24	27	24	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820048	10	104830699	C	CG	360	PASS	CNNM2	CCDS44474.1	r.?	-	-	Ins	intronic	I	104830699	104830708	1	15	312.531	-	-	8	1	1	CNNM2|CCDS44474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNNM2|CCDS44474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	4	3	7	28	36	29	36	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820223	10	105371792	GT	G	540	PASS	SH3PXD2A	CCDS31278.1	r.?	-	-	Del	intronic	D	105371792	105371796	1	30	485.955	-	-	3	1	1	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	4	5	5	8	21	34	21	34	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820243	10	105452683	AC	A	300	PASS	SH3PXD2A	CCDS31278.1	r.?	-	-	Del	intronic	D	105452683	105452692	1	10	265.761	-	-	8	1	1	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	4	5	16	32	16	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820432	10	106186186	TC	T	480	PASS	CCDC147	CCDS31282.1	r.?	-	-	Del	intronic	D	106186186	106186193	1	25	431.358	-	-	6	1	1	CCDC147|CCDS31282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC147|CCDS31282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	4	20	4	0	0	./.	4	4	4	5	19	22	19	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820563	10	106686183	TA	T	360	PASS	SORCS3	CCDS7558.1	r.?	-	-	Del	intronic	D	106686183	106686193	1	15	323.97	-	-	9	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	3	4	27	25	27	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820648	10	107077954	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	107077954	107077963	1	10	266.965	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	1	4	1	4	8	24	8	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820653	10	107098048	TA	T	300	PASS	-	-	-	-	-	Del	-	D	107098048	107098055	1	12	269.975	-	-	6	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	3	2	4	25	25	25	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820685	10	107261380	CA	C	300	PASS	-	-	-	-	-	Del	-	D	107261380	107261390	1	6	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	0	5	3	24	14	24	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820887	10	107992608	CT	C	960	PASS	-	-	-	-	-	Del	-	D	107992608	107992617	1	77	863.92	-	-	8	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	6	10	6	11	12	26	12	26	6	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820936	10	108115390	TA	T	300	PASS	-	-	-	-	-	Del	-	D	108115390	108115399	1	12	269.975	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	2	5	2	31	23	31	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759820959	10	108229258	CA	C	358	PASS	-	-	-	-	-	Del	-	D	108229258	108229268	1	14	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	1	6	2	6	17	24	17	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821161	10	108970937	AT	A	420	PASS	-	-	-	-	-	Del	-	D	108970937	108970947	1	20	377.363	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	5	6	26	30	26	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821314	10	109494728	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	109494728	109494737	1	12	266.965	-	-	8	1	1	-	-	./.	0	0	0	0	12	18	13	18	0	0	./.	2	3	2	3	17	15	17	15	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821434	10	109735950	TG	T	300	PASS	-	-	-	-	-	Del	-	D	109735950	109735956	1	12	269.975	-	-	5	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	3	3	5	11	29	11	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821506	10	110005059	CT	C	300	PASS	-	-	-	-	-	Del	-	D	110005059	110005064	1	10	269.975	-	-	4	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	1	6	2	24	24	24	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821744	10	110775884	GA	G	354	PASS	-	-	-	-	-	Del	-	D	110775884	110775893	1	15	323.97	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	2	5	9	25	9	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821750	10	110814414	CT	C	540	PASS	-	-	-	-	-	Del	-	D	110814414	110814423	1	30	485.955	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	5	6	5	29	19	29	19	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821762	10	110870833	GT	G	360	PASS	-	-	-	-	-	Del	-	D	110870833	110870838	1	12	323.97	-	-	4	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	1	5	1	6	7	26	7	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821778	10	110934757	AT	A	540	PASS	-	-	-	-	-	Del	-	D	110934757	110934765	1	30	485.955	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	4	6	5	40	27	40	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759821838	10	111246972	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	111246972	111246981	1	10	266.965	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	1	4	1	5	26	26	27	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822014	10	111967927	TC	T	300	PASS	MXI1	CCDS7563.1	r.?	-	-	Del	intronic	D	111967927	111967937	1	10	266.965	-	-	9	1	1	MXI1|CCDS7563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MXI1|CCDS7563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	1	4	3	5	24	18	24	18	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822072	10	112121862	TG	T	300	PASS	-	-	-	-	-	Del	-	D	112121862	112121869	1	10	269.975	-	-	6	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	1	5	2	23	8	23	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822091	10	112183382	GT	G	360	PASS	-	-	-	-	-	Del	-	D	112183382	112183387	1	16	323.97	-	-	4	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	5	6	14	36	14	36	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822303	10	112851157	TA	T	660	PASS	-	-	-	-	-	Del	-	D	112851157	112851167	1	42	593.945	-	-	9	1	1	-	-	./.	0	0	0	0	8	21	8	21	0	0	./.	6	5	7	6	31	34	31	34	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822516	10	113513262	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	113513262	113513272	1	6	266.363	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	0	5	0	5	3	21	3	21	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822601	10	113851133	AT	A	300	PASS	-	-	-	-	-	Del	-	D	113851133	113851143	1	12	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	5	2	22	17	22	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822900	10	114856698	AC	A	420	PASS	TCF7L2	CCDS7576.1	r.?	-	-	Del	intronic	D	114856698	114856705	1	18	366.526	-	-	6	1	1	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	5	5	5	18	26	18	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759822913	10	114893156	AC	A	600	PASS	TCF7L2	CCDS7576.1	r.?	-	-	Del	intronic	D	114893156	114893163	1	32	539.95	-	-	6	1	1	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	7	3	7	4	29	24	29	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823239	10	115990661	C	CA	420	PASS	TDRD1	CCDS7588.1	r.?	-	-	Ins	intronic	I	115990661	115990670	1	20	373.75	-	-	8	1	1	TDRD1|CCDS7588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TDRD1|CCDS7588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	3	4	5	28	42	28	42	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823240	10	115990825	CA	C	329	PASS	TDRD1	CCDS7588.1	r.?	-	-	Del	intronic	D	115990825	115990833	1	15	322.766	-	-	7	1	1	TDRD1|CCDS7588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TDRD1|CCDS7588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	4	2	4	2	24	30	24	30	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823262	10	116062576	GTTAA	G	420	PASS	AFAP1L2	CCDS31287.1	r.?	-	-	Del	intronic	D	116062576	116062586	4	18	377.965	-	-	2	1	1	AFAP1L2|CCDS31287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFAP1L2|CCDS31287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	2	6	4	27	19	27	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823269	10	116078343	CA	C	360	PASS	AFAP1L2	CCDS31287.1	r.?	-	-	Del	intronic	D	116078343	116078353	1	16	322.164	-	-	9	1	1	AFAP1L2|CCDS31287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFAP1L2|CCDS31287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	3	7	21	24	21	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823494	10	116701552	AT	A	540	PASS	TRUB1	CCDS7591.1	r.?	-	-	Del	intronic	D	116701552	116701562	1	30	483.547	-	-	9	1	1	TRUB1|CCDS7591.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRUB1|CCDS7591.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	5	4	5	6	25	22	25	22	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823539	10	116890287	TA	T	360	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	116890287	116890294	1	16	323.97	-	-	6	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	4	3	28	18	28	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823562	10	116973375	T	TG	300	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Ins	intronic	I	116973375	116973382	1	12	266.965	-	-	6	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	3	2	4	2	19	33	19	35	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823592	10	117079152	C	CT	480	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Ins	intronic	I	117079152	117079162	1	24	426.541	-	-	9	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	5	3	7	7	21	37	22	37	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823598	10	117094865	AT	A	300	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	117094865	117094875	1	10	269.975	-	-	9	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	4	1	28	7	28	7	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823619	10	117200286	GA	G	300	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	117200286	117200296	1	12	269.975	-	-	9	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	2	3	2	27	16	27	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823686	10	117437292	AG	A	540	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	117437292	117437298	1	30	484.751	-	-	5	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	5	5	5	19	23	19	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823694	10	117488538	G	GA	360	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Ins	intronic	I	117488538	117488547	1	15	320.358	-	-	8	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	15	0	0	./.	2	4	3	4	24	17	24	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823722	10	117557429	C	CT	300	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Ins	intronic	I	117557429	117557439	1	12	266.965	-	-	9	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	4	3	24	25	24	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759823950	10	118289836	TA	T	300	PASS	-	-	-	-	-	Del	-	D	118289836	118289842	1	12	269.975	-	-	5	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	4	2	14	7	14	7	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824058	10	118601411	CA	C	420	PASS	-	-	-	-	-	Del	-	D	118601411	118601421	1	14	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	6	1	6	1	24	6	24	6	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824140	10	118849936	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	118849936	118849941	1	14	373.751	-	-	4	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	1	6	3	7	21	31	21	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824308	10	119300758	AT	A	300	PASS	EMX2	CCDS7601.1	r.?	-	-	Del	upstream	D	119300758	119300768	1	10	269.975	-	-	9	1	1	EMX2|CCDS7601.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	EMX2|CCDS7601.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	8	5	8	0	0	./.	1	4	1	6	11	25	11	25	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824324	10	119324757	TG	T	509	PASS	-	-	-	-	-	Del	-	D	119324757	119324765	1	30	484.751	-	-	7	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	4	5	6	6	24	33	24	33	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824385	10	119503967	CT	C	540	PASS	-	-	-	-	-	Del	-	D	119503967	119503977	1	30	484.751	-	-	9	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	5	7	6	24	28	24	28	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824568	10	120063336	G	GA	300	PASS	C10orf84	CCDS7605.1	r.?	-	-	Ins	downstream	I	120063336	120063345	1	12	258.536	-	-	8	1	1	C10orf84|CCDS7605.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C10orf84|CCDS7605.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	5	2	31	26	31	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824616	10	120204437	CA	C	300	PASS	-	-	-	-	-	Del	-	D	120204437	120204447	1	10	269.975	-	-	9	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	1	4	2	6	17	25	17	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824758	10	120614551	GA	G	300	PASS	-	-	-	-	-	Del	-	D	120614551	120614557	1	10	269.975	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	6	3	32	23	32	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759824893	10	120886283	AT	A	420	PASS	FAM45A	CCDS7609.1	r.?	-	-	Del	intronic	D	120886283	120886293	1	20	376.761	-	-	9	1	1	FAM45A|CCDS7609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM45A|CCDS7609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	4	4	4	25	24	25	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825054	10	121273446	TA	T	300	PASS	RGS10	CCDS41572.1	r.?	-	-	Del	intronic	D	121273446	121273455	1	6	269.975	-	-	8	1	1	RGS10|CCDS41572.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS10|CCDS41572.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	5	0	8	0	24	11	24	11	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825200	10	121573470	CT	C	300	PASS	INPP5F	CCDS7616.1	r.?	-	-	Del	intronic	D	121573470	121573480	1	10	268.771	-	-	9	1	1	INPP5F|CCDS7616.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INPP5F|CCDS7616.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	1	5	4	22	29	22	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825306	10	121843734	TA	T	420	PASS	-	-	-	-	-	Del	-	D	121843734	121843743	1	18	368.934	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	2	7	3	31	30	31	30	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825455	10	122314606	TG	T	480	PASS	PPAPDC1A	CCDS41573.1	r.?	-	-	Del	intronic	D	122314606	122314612	1	21	431.96	-	-	5	1	1	PPAPDC1A|CCDS41573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPAPDC1A|CCDS41573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	6	2	8	4	25	34	25	34	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825462	10	122336696	CT	C	300	PASS	PPAPDC1A	CCDS41573.1	r.?	-	-	Del	intronic	D	122336696	122336706	1	10	269.975	-	-	9	1	1	PPAPDC1A|CCDS41573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPAPDC1A|CCDS41573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	1	4	3	5	32	31	32	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825524	10	122500110	TA	T	300	PASS	-	-	-	-	-	Del	-	D	122500110	122500117	1	10	269.373	-	-	6	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	2	4	11	27	11	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759825792	10	123294968	CT	C	360	PASS	FGFR2	CCDS44486.1	r.?	-	-	Del	intronic	D	123294968	123294976	1	16	323.97	-	-	7	1	1	FGFR2|CCDS44486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGFR2|CCDS44486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	3	5	20	20	20	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826148	10	123920466	CT	C	300	PASS	TACC2	CCDS7626.1	r.?	-	-	Del	intronic	D	123920466	123920475	1	12	269.975	-	-	8	1	1	TACC2|CCDS7626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TACC2|CCDS7626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	3	2	5	2	24	14	24	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826305	10	124442386	CA	C	420	PASS	ENSG00000214308	ENST00000398072	r.?	-	-	Del	downstream	D	124442386	124442396	1	20	377.965	-	-	9	1	1	ENSG00000214308|ENST00000398072|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000214308|ENST00000398072|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	15	9	15	0	0	./.	3	4	6	5	34	27	34	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826430	10	124931986	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	124931986	124931993	1	12	320.358	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	1	5	1	5	23	40	23	40	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826529	10	125295528	GA	G	420	PASS	-	-	-	-	-	Del	-	D	125295528	125295537	1	18	374.955	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	5	3	7	17	27	17	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826596	10	125479173	GT	G	360	PASS	CPXM2	ENST00000368854	r.?	-	-	Del	intronic	D	125479173	125479183	1	15	322.766	-	-	9	1	1	CPXM2|ENST00000368854|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPXM2|ENST00000368854|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	2	6	8	24	8	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826626	10	125558144	GA	G	480	PASS	CPXM2	CCDS7637.1	r.?	-	-	Del	intronic	D	125558144	125558150	1	24	431.358	-	-	5	1	1	CPXM2|CCDS7637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPXM2|CCDS7637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	3	5	6	35	33	35	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826699	10	125809333	CT	C	300	PASS	CHST15	CCDS7638.1	r.?	-	-	Del	intronic	D	125809333	125809339	1	10	269.975	-	-	5	1	1	CHST15|CCDS7638.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHST15|CCDS7638.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	2	4	15	19	15	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826771	10	126051072	GA	G	660	PASS	-	-	-	-	-	Del	-	D	126051072	126051079	1	42	593.945	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	5	6	8	38	31	38	31	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826780	10	126083411	TAC	T	480	PASS	OAT	CCDS7639.1	r.?	-	-	Del	downstream	D	126083411	126083423	2	21	431.96	-	-	5	1	1	OAT|CCDS7639.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OAT|CCDS7639.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	7	11	7	0	0	./.	2	6	2	7	30	27	30	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759826846	10	126207523	GT	G	389	PASS	LHPP	CCDS7640.1	r.?	-	-	Del	intronic	D	126207523	126207531	1	20	377.965	-	-	7	1	-	LHPP|CCDS7640.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHPP|CCDS7640.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	3	5	3	33	22	33	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827060	10	126667164	GA	G	300	PASS	ZRANB1	CCDS7642.1	r.?	-	-	Del	intronic	D	126667164	126667172	1	12	269.975	-	-	7	1	1	ZRANB1|CCDS7642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZRANB1|CCDS7642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	3	3	16	19	16	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827274	10	127352482	AC	A	540	PASS	C10orf122	CCDS44493.1	r.?	-	-	Del	intronic	D	127352482	127352489	1	28	485.955	-	-	6	1	1	C10orf122|CCDS44493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf122|CCDS44493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	6	3	6	3	26	24	26	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827597	10	127766305	CA	C	540	PASS	ADAM12	CCDS7653.1	r.?	-	-	Del	intronic	D	127766305	127766311	1	30	484.751	-	-	5	1	1	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	4	5	4	5	25	26	25	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827638	10	127869141	T	TA	360	PASS	ADAM12	CCDS7653.1	r.?	-	-	Ins	intronic	I	127869141	127869150	1	16	320.358	-	-	8	1	1	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	11	20	12	0	0	./.	3	3	5	4	23	22	23	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827675	10	127987237	TA	T	300	PASS	ADAM12	CCDS7653.1	r.?	-	-	Del	intronic	D	127987237	127987246	1	12	269.975	-	-	8	1	1	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	27	13	27	0	0	./.	2	3	2	5	9	23	9	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827797	10	128438638	AC	A	420	PASS	-	-	-	-	-	Del	-	D	128438638	128438646	1	18	371.342	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	5	3	5	12	24	12	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759827951	10	128963429	AT	A	360	PASS	DOCK1	ENST00000398025	r.?	-	-	Del	intronic	D	128963429	128963436	1	15	323.97	-	-	6	1	1	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AL390920.1|ENST00000355226|r.860delA|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	6	2	29	22	29	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828033	10	129148500	TA	T	360	PASS	DOCK1	ENST00000398025	r.?	-	-	Del	intronic	D	129148500	129148510	1	12	320.96	-	-	9	1	1	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	5	3	6	21	16	21	16	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828045	10	129173122	TC	T	420	PASS	DOCK1	ENST00000398025	r.?	-	-	Del	intronic	D	129173122	129173130	1	20	373.148	-	-	7	1	1	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	8	4	35	22	35	22	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828214	10	129634917	TG	T	420	PASS	-	-	-	-	-	Del	-	D	129634917	129634924	1	20	377.965	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	4	6	6	18	14	18	14	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828289	10	129968917	AT	A	360	PASS	-	-	-	-	-	Del	-	D	129968917	129968927	1	15	323.97	-	-	9	1	1	-	-	./.	0	0	0	0	19	6	19	6	0	0	./.	2	4	3	5	11	16	11	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828337	10	130132158	GT	G	300	PASS	-	-	-	-	-	Del	-	D	130132158	130132166	1	10	269.975	-	-	7	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	1	5	2	28	31	28	31	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828359	10	130208718	AT	A	420	PASS	-	-	-	-	-	Del	-	D	130208718	130208728	1	20	377.965	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	4	4	22	25	22	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828365	10	130239691	CA	C	480	PASS	-	-	-	-	-	Del	-	D	130239691	130239700	1	16	431.96	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	7	1	8	3	32	22	32	22	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828380	10	130272809	GT	G	300	PASS	-	-	-	-	-	Del	-	D	130272809	130272818	1	12	269.975	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	4	3	25	21	25	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828580	10	130935499	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	130935499	130935507	1	18	373.751	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	2	6	3	23	35	23	35	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828628	10	131098331	AG	A	300	PASS	-	-	-	-	-	Del	-	D	131098331	131098335	1	10	269.975	-	-	3	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	1	4	4	26	24	26	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828664	10	131224785	TA	T	480	PASS	-	-	-	-	-	Del	-	D	131224785	131224794	1	25	431.96	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	4	5	4	34	35	34	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828695	10	131357817	CT	C	540	PASS	MGMT	CCDS7660.2	r.?	-	-	Del	intronic	D	131357817	131357826	1	28	485.353	-	-	8	1	1	MGMT|CCDS7660.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGMT|CCDS7660.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	3	7	3	34	15	34	15	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828751	10	131589165	TG	T	300	PASS	-	-	-	-	-	Del	-	D	131589165	131589172	1	12	269.975	-	-	6	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	2	4	18	28	18	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828785	10	131710890	AT	A	300	PASS	EBF3	CCDS31314.1	r.?	-	-	Del	intronic	D	131710890	131710897	1	12	269.975	-	-	6	1	1	EBF3|CCDS31314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EBF3|CCDS31314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	3	37	33	37	33	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828801	10	131769835	GT	G	420	PASS	-	-	-	-	-	Del	-	D	131769835	131769837	1	20	374.955	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	3	4	24	26	24	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759828876	10	131996964	AT	A	480	PASS	-	-	-	-	-	Del	-	D	131996964	131996974	1	24	431.96	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	3	6	21	23	21	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759829708	10	134739780	AG	A	420	PASS	C10orf92	CCDS7672.2	r.?	-	-	Del	downstream	D	134739780	134739786	1	20	373.148	-	-	5	1	1	C10orf92|CCDS7672.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C10orf92|ENST00000368586|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	3	5	6	30	30	30	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759829807	10	135079924	CA	C	540	PASS	-	-	-	-	-	Del	-	D	135079924	135079934	1	28	484.751	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	3	7	3	37	23	37	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830306	11	743960	AT	A	329	PASS	TALDO1	CCDS7712.1	r.?	-	-	Del	upstream	D	743960	743969	1	12	317.85	-	-	8	1	1	TALDO1|CCDS7712.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TALDO1|CCDS7712.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	9	8	9	0	0	./.	1	5	1	6	20	24	20	24	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830450	11	1141004	GT	G	300	PASS	MUC5B	ENST00000406844	r.?	-	-	Del	upstream	D	1141004	1141013	1	12	270.394	-	-	8	1	1	MUC5B|ENST00000406844|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MUC5B|ENST00000406844|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	3	10	3	0	0	./.	2	3	5	6	33	30	33	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830588	11	1679187	CT	C	300	PASS	-	-	-	-	-	Del	-	D	1679187	1679196	1	10	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	4	1	7	3	26	25	26	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830606	11	1713710	AG	A	480	PASS	KRTAP5-6	CCDS31332.1	r.?	-	-	Del	upstream	D	1713710	1713716	1	21	432.63	-	-	5	1	1	KRTAP5-6|CCDS31332.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KRTAP5-6|CCDS31332.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	3	10	3	0	0	./.	2	6	3	7	19	24	19	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830620	11	1760832	AAC	A	420	PASS	ENSG00000244242	ENST00000382123	r.?	-	-	Del	intronic	D	1760832	1760836	2	8	378.551	-	-	1	1	1	ENSG00000244242|ENST00000382123|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000244242|ENST00000382123|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	0	7	1	7	17	29	17	29	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830689	11	1962381	CA	C	420	PASS	TNNT3	CCDS41596.1	r.?	-	-	Del	downstream	D	1962381	1962387	1	20	376.143	-	-	5	1	1	TNNT3|CCDS41596.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MRPL23|ENST00000228013|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	3	4	15	20	15	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830800	11	2331792	CTG	C	480	PASS	TSPAN32	CCDS7733.1	r.?	-	-	Del	intronic	D	2331792	2331798	2	24	431.426	-	-	2	1	1	TSPAN32|CCDS7733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSPAN32|CCDS7733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	5	4	32	30	32	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830894	11	2689905	CAG	C	360	PASS	KCNQ1	CCDS7736.1	r.?	-	-	Del	intronic	D	2689905	2689917	2	7	324.472	-	-	5	1	1	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	0	6	0	8	17	27	17	27	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759830947	11	2914088	CTG	C	509	PASS	-	-	-	-	-	Del	-	D	2914088	2914093	2	28	481.892	-	-	2	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	3	6	4	7	21	31	21	31	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759831037	11	3107076	TA	T	540	PASS	OSBPL5	CCDS31344.1	r.?	-	-	Del	downstream	D	3107076	3107086	1	30	484.903	-	-	9	1	1	OSBPL5|CCDS31344.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OSBPL5|CCDS31344.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	4	5	6	6	26	30	26	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759831373	11	4037339	TGGA	T	269	PASS	STIM1	CCDS7749.1	r.?	-	-	Del	intronic	D	4037339	4037347	3	10	270.394	-	-	2	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	2	5	23	25	23	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759831573	11	4589354	CA	C	360	PASS	C11orf40	CCDS31354.1	r.?	-	-	Del	downstream	D	4589354	4589361	1	16	324.472	-	-	6	1	1	C11orf40|CCDS31354.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C11orf40|CCDS31354.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	6	18	31	18	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759831844	11	5286385	TA	T	420	PASS	HBG2	CCDS7755.1	r.?	-	-	Del	intronic	D	5286385	5286394	1	18	377.347	-	-	8	1	1	HBG2|CCDS7755.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HBG2|CCDS7755.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	5	2	5	4	24	26	24	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759831880	11	5362938	AT	A	360	PASS	HBG2	CCDS7755.1	r.?	-	-	Del	intronic	D	5362938	5362948	1	15	324.472	-	-	9	1	1	HBG2|CCDS7755.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HBG2|CCDS7755.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	4	5	5	27	29	27	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832084	11	5699144	GGTAA	G	269	PASS	TRIM5	CCDS31394.1	r.?	-	-	Del	intronic	D	5699144	5699151	4	10	270.394	-	-	1	1	1	TRIM5|CCDS31394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM5|CCDS31394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	4	1	25	16	25	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832152	11	5892940	TA	T	420	PASS	TRIM5	CCDS31392.1	r.?	-	-	Del	intronic	D	5892940	5892949	1	20	378.551	-	-	8	1	1	TRIM5|CCDS31392.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRIM5|CCDS31392.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	3	6	5	25	24	25	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832382	11	6636017	C	CA	420	PASS	TPP1	CCDS7770.1	r.?	-	-	Ins	intronic	I	6636017	6636019	1	20	373.735	-	-	1	1	1	TPP1|CCDS7770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TPP1|CCDS7770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	3	4	3	5	23	35	23	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832614	11	7355865	C	CTCGCTGCCACCCATCCCCCCAA	319	PASS	SYT9	CCDS7778.1	r.?	-	-	Ins	intronic	I	7355865	7355868	22	12	447.964	-	-	0	1	1	SYT9|CCDS7778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYT9|CCDS7778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	7	13	0	0	./.	11	0	3	2	10	16	20	28	11	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832689	11	7569248	TA	T	329	PASS	PPFIBP2	CCDS31419.1	r.?	-	-	Del	intronic	D	7569248	7569258	1	16	324.472	-	-	9	1	1	PPFIBP2|CCDS31419.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPFIBP2|CCDS31419.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	4	5	20	32	20	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832705	11	7598085	CT	C	360	PASS	PPFIBP2	CCDS31419.1	r.?	-	-	Del	intronic	D	7598085	7598094	1	16	324.472	-	-	8	1	1	PPFIBP2|CCDS31419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPFIBP2|CCDS31419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	3	3	5	4	24	29	24	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832736	11	7726474	GA	G	480	PASS	OVCH2	ENST00000454689	r.?	-	-	Del	intronic	D	7726474	7726481	1	25	432.63	-	-	6	1	1	OVCH2|ENST00000454689|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OVCH2|ENST00000454689|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	4	6	5	28	18	28	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832754	11	7807174	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	7807174	7807183	1	12	266.179	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	4	3	23	27	23	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832951	11	8358842	CCTTT	C	360	PASS	-	-	-	-	-	Del	-	D	8358842	8358850	4	7	324.472	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	0	6	2	6	15	36	15	36	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759832995	11	8547619	G	GA	420	PASS	STK33	CCDS7789.1	r.?	-	-	Ins	intronic	I	8547619	8547626	1	18	374.337	-	-	6	1	1	STK33|CCDS7789.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	STK33|CCDS7789.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	2	6	3	23	22	23	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833078	11	8770484	GA	G	660	PASS	ST5	CCDS7791.1	r.?	-	-	Del	intronic	D	8770484	8770494	1	42	594.866	-	-	9	1	1	ST5|CCDS7791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST5|CCDS7791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	20	8	20	0	0	./.	5	6	5	7	15	29	15	29	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833108	11	8828070	CA	C	300	PASS	ST5	CCDS7791.1	r.?	-	-	Del	intronic	D	8828070	8828078	1	10	270.394	-	-	7	1	1	ST5|CCDS7791.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ST5|CCDS7791.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	1	4	2	4	13	30	13	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833115	11	8834673	G	GT	300	PASS	ST5	CCDS7791.1	r.?	-	-	Ins	intronic	I	8834673	8834681	1	10	267.383	-	-	7	1	1	ST5|CCDS7791.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ST5|CCDS7791.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	16	0	0	./.	1	4	2	5	23	22	24	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833207	11	9004001	TC	T	389	PASS	NRIP3	CCDS31422.1	r.1930delG	c.?	p.?	Del	3'UTR variant	D	9004001	9004008	1	20	378.551	-	-	6	1	1	NRIP3|CCDS31422.1|r.1930delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	NRIP3|CCDS31422.1|r.1930delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	6	4	19	24	19	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833290	11	9232574	CAAG	C	329	PASS	DENND5A	CCDS31423.1	r.?	-	-	Del	intronic	D	9232574	9232582	3	16	323.87	-	-	2	1	1	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	5	4	15	27	15	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833296	11	9242283	TA	T	360	PASS	DENND5A	CCDS31423.1	r.?	-	-	Del	intronic	D	9242283	9242291	1	7	324.472	-	-	7	1	1	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DENND5A|CCDS31423.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	0	6	0	20	1	20	1	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833483	11	9578315	GA	G	600	PASS	-	-	-	-	-	Del	-	D	9578315	9578323	1	32	540.787	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	7	6	7	32	32	32	32	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833564	11	9760415	GA	G	780	PASS	SWAP70	CCDS31426.1	r.?	-	-	Del	intronic	D	9760415	9760425	1	54	703.024	-	-	9	1	1	SWAP70|CCDS31426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SWAP70|CCDS31426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	8	5	10	26	37	26	37	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833635	11	9924907	GA	G	337	PASS	SBF2	CCDS31427.1	r.?	-	-	Del	intronic	D	9924907	9924916	1	15	324.472	-	-	8	1	1	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	2	5	3	30	25	30	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833645	11	9936454	TG	T	480	PASS	SBF2	CCDS31427.1	r.?	-	-	Del	intronic	D	9936454	9936463	1	21	428.416	-	-	8	1	1	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	6	2	7	10	25	10	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833682	11	10019324	CA	C	269	PASS	SBF2	CCDS31427.1	r.?	-	-	Del	intronic	D	10019324	10019334	1	12	270.394	-	-	9	1	1	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	2	3	2	6	23	21	23	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759833854	11	10481822	CT	C	300	PASS	AMPD3	CCDS44537.1	r.?	-	-	Del	intronic	D	10481822	10481829	1	6	269.19	-	-	6	1	1	AMPD3|CCDS44537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AMPD3|CCDS44537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	0	12	0	0	0	./.	5	0	6	0	28	0	28	0	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834122	11	11244263	CT	C	360	PASS	-	-	-	-	-	Del	-	D	11244263	11244273	1	15	323.87	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	4	5	5	24	21	24	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834376	11	12114300	AAGG	A	327	PASS	-	-	-	-	-	Del	-	D	12114300	12114307	3	18	378.551	-	-	2	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	5	2	5	17	23	17	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834482	11	12449150	AT	A	360	PASS	PARVA	CCDS44541.1	r.?	-	-	Del	intronic	D	12449150	12449160	1	15	323.87	-	-	9	1	1	PARVA|CCDS44541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARVA|CCDS44541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	4	3	4	28	15	28	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834624	11	12856717	G	GT	420	PASS	TEAD1	CCDS7810.1	r.?	-	-	Ins	intronic	I	12856717	12856726	1	18	374.337	-	-	8	1	1	TEAD1|CCDS7810.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TEAD1|CCDS7810.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	5	2	23	28	23	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834634	11	12864272	AT	A	300	PASS	TEAD1	CCDS7810.1	r.?	-	-	Del	intronic	D	12864272	12864282	1	10	270.394	-	-	9	1	1	TEAD1|CCDS7810.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEAD1|CCDS7810.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	1	4	3	4	20	30	20	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834865	11	13541597	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	13541597	13541607	1	21	427.814	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	6	2	7	3	35	27	37	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834871	11	13565795	CT	C	342	PASS	-	-	-	-	-	Del	-	D	13565795	13565805	1	21	432.63	-	-	9	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	6	2	10	3	34	21	34	21	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759834963	11	13856975	GT	G	449	PASS	-	-	-	-	-	Del	-	D	13856975	13856983	1	25	432.63	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	4	6	4	32	30	32	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835012	11	14081646	AC	A	480	PASS	SPON1	ENST00000310358	r.?	-	-	Del	intronic	D	14081646	14081654	1	25	431.426	-	-	7	1	1	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	4	4	8	30	22	30	22	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835018	11	14102301	CT	C	300	PASS	SPON1	ENST00000310358	r.?	-	-	Del	intronic	D	14102301	14102310	1	10	259.557	-	-	8	1	1	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	1	4	2	4	27	24	27	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835078	11	14291151	C	CA	360	PASS	SPON1	ENST00000310358	r.?	-	-	Ins	downstream	I	14291151	14291160	1	16	320.86	-	-	8	1	1	SPON1|ENST00000310358|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SPON1|ENST00000310358|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	5	15	5	15	0	0	./.	3	3	4	3	20	23	20	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835084	11	14312000	GA	G	300	PASS	RRAS2	CCDS7814.1	r.?	-	-	Del	intronic	D	14312000	14312009	1	12	270.394	-	-	8	1	1	RRAS2|CCDS7814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RRAS2|CCDS7814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	2	5	3	26	31	26	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835152	11	14488919	CA	C	300	PASS	COPB1	CCDS7815.1	r.?	-	-	Del	intronic	D	14488919	14488929	1	10	270.394	-	-	9	1	1	COPB1|CCDS7815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COPB1|CCDS7815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	4	1	5	1	21	24	21	24	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835259	11	15035934	GT	G	300	PASS	CALCB	CCDS7820.1	r.?	-	-	Del	intronic	D	15035934	15035943	1	10	270.394	-	-	8	1	1	CALCB|CCDS7820.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CALCB|CCDS7820.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	4	1	6	3	27	27	27	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835266	11	15099532	CT	C	300	PASS	CALCB	CCDS7820.1	r.?	-	-	Del	intronic	D	15099532	15099540	1	12	270.394	-	-	7	1	1	CALCB|CCDS7820.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	CALCB|CCDS7820.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	10	27	10	0	0	./.	2	3	3	6	19	32	19	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835387	11	15515947	CA	C	300	PASS	-	-	-	-	-	Del	-	D	15515947	15515956	1	12	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	3	2	3	2	20	27	20	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835446	11	15742499	TC	T	360	PASS	-	-	-	-	-	Del	-	D	15742499	15742504	1	16	319.656	-	-	4	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	3	3	3	5	14	28	14	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835487	11	15901644	CAA	C	420	PASS	-	-	-	-	-	Del	-	D	15901644	15901649	2	18	378.551	-	-	4	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	5	3	6	21	26	21	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835506	11	15976845	CT	C	300	PASS	-	-	-	-	-	Del	-	D	15976845	15976854	1	6	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	0	5	2	7	29	25	29	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835633	11	16576303	AAGG	A	480	PASS	-	-	-	-	-	Del	-	D	16576303	16576310	3	24	432.63	-	-	2	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	5	3	16	7	16	7	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759835947	11	17461172	G	GA	420	PASS	ABCC8	CCDS31437.1	r.?	-	-	Ins	intronic	I	17461172	17461182	1	18	374.337	-	-	9	1	1	ABCC8|CCDS31437.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCC8|CCDS31437.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	5	2	5	2	25	25	25	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836221	11	18448934	CA	C	360	PASS	LDHC	CCDS7840.1	r.?	-	-	Del	intronic	D	18448934	18448942	1	16	321.462	-	-	7	1	1	LDHC|CCDS7840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDHC|CCDS7840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	3	3	26	21	26	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836284	11	18569393	C	CT	480	PASS	UEVLD	CCDS41624.1	r.?	-	-	Ins	intronic	I	18569393	18569399	1	16	427.814	-	-	5	1	1	UEVLD|CCDS41624.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UEVLD|CCDS41624.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	7	1	8	1	30	1	32	1	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836303	11	18606346	AT	A	360	PASS	UEVLD	CCDS41624.1	r.?	-	-	Del	intronic	D	18606346	18606352	1	12	324.472	-	-	5	1	1	UEVLD|CCDS41624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UEVLD|CCDS41624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	5	1	5	2	21	16	21	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836464	11	19024923	TG	T	600	PASS	-	-	-	-	-	Del	-	D	19024923	19024929	1	36	535.971	-	-	5	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	5	7	5	32	20	32	20	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836479	11	19069571	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	19069571	19069578	1	21	427.814	-	-	6	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	2	6	3	29	12	29	12	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836640	11	19597134	AC	A	420	PASS	-	-	-	-	-	Del	-	D	19597134	19597141	1	20	373.735	-	-	6	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	3	5	3	33	31	33	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836684	11	19799775	GT	G	300	PASS	NAV2	CCDS7851.2	r.?	-	-	Del	intronic	D	19799775	19799783	1	10	270.394	-	-	7	1	1	NAV2|CCDS7851.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAV2|CCDS7851.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	1	4	18	29	18	29	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836740	11	19987130	C	CA	480	PASS	NAV2	CCDS7851.2	r.?	-	-	Ins	intronic	I	19987130	19987133	1	24	427.814	-	-	2	1	1	NAV2|CCDS7851.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAV2|CCDS7851.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	8	5	38	39	39	40	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836775	11	20082005	A	AT	300	PASS	NAV2	CCDS7851.2	r.?	-	-	Ins	intronic	I	20082005	20082012	1	12	267.383	-	-	6	1	1	NAV2|CCDS7851.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAV2|CCDS7851.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	4	3	32	27	32	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836882	11	20406425	T	TA	420	PASS	PRMT3	CCDS7853.1	r.?	-	-	Ins	upstream	I	20406425	20406428	1	20	374.337	-	-	2	1	1	PRMT3|CCDS7853.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PRMT3|CCDS7853.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	13	14	13	0	0	./.	3	4	3	5	22	28	23	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759836937	11	20536935	CT	C	480	PASS	-	-	-	-	-	Del	-	D	20536935	20536941	1	21	430.222	-	-	5	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	6	2	8	3	30	24	30	24	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837249	11	21478546	A	AC	300	PASS	NELL1	CCDS7855.1	r.?	-	-	Ins	intronic	I	21478546	21478548	1	12	267.383	-	-	1	1	1	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	3	2	3	2	24	19	27	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837283	11	21569572	TA	T	269	PASS	NELL1	CCDS7855.1	r.?	-	-	Del	intronic	D	21569572	21569582	1	10	269.19	-	-	9	1	1	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	2	7	9	24	9	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837413	11	21884922	GT	G	360	PASS	-	-	-	-	-	Del	-	D	21884922	21884932	1	16	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	3	4	5	17	28	17	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837419	11	21900771	CA	C	336	PASS	-	-	-	-	-	Del	-	D	21900771	21900780	1	24	486.709	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	7	3	7	31	28	31	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837449	11	21973498	AC	A	540	PASS	-	-	-	-	-	Del	-	D	21973498	21973500	1	30	477.076	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	4	6	4	37	19	37	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837611	11	22500950	CA	C	300	PASS	-	-	-	-	-	Del	-	D	22500950	22500956	1	12	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	2	4	7	17	22	17	22	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837612	11	22505204	CT	C	360	PASS	-	-	-	-	-	Del	-	D	22505204	22505210	1	12	324.472	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	1	7	2	25	21	25	21	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837662	11	22652374	G	GT	600	PASS	FANCF	CCDS7857.1	r.?	-	-	Ins	upstream	I	22652374	22652382	1	32	534.767	-	-	7	1	1	FANCF|CCDS7857.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FANCF|CCDS7857.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	12	11	12	0	0	./.	3	7	4	7	38	34	38	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759837857	11	23224104	TG	T	360	PASS	-	-	-	-	-	Del	-	D	23224104	23224112	1	16	324.472	-	-	7	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	3	3	4	6	21	26	21	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838156	11	24100005	CA	C	300	PASS	-	-	-	-	-	Del	-	D	24100005	24100014	1	10	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	1	4	3	4	27	22	27	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838187	11	24184794	G	GA	360	PASS	ENSG00000228428	ENST00000431349	r.?	-	-	Ins	intronic	I	24184794	24184801	1	7	320.86	-	-	6	1	1	ENSG00000228428|ENST00000431349|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000228428|ENST00000431349|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	6	0	8	0	11	7	11	7	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838419	11	24888186	C	CA	480	PASS	LUZP2	CCDS31446.1	r.?	-	-	Ins	intronic	I	24888186	24888195	1	25	427.814	-	-	8	1	1	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	18	16	0	0	./.	4	4	6	4	33	30	33	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838480	11	25044828	CT	C	414	PASS	LUZP2	CCDS31446.1	r.?	-	-	Del	intronic	D	25044828	25044838	1	18	378.551	-	-	9	1	1	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	5	2	7	22	29	22	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838539	11	25209698	GT	G	300	PASS	-	-	-	-	-	Del	-	D	25209698	25209708	1	10	269.19	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	1	4	9	26	9	26	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838739	11	25754417	GA	G	360	PASS	-	-	-	-	-	Del	-	D	25754417	25754425	1	16	324.472	-	-	7	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	3	3	3	3	17	33	17	33	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838900	11	26067274	CT	C	300	PASS	-	-	-	-	-	Del	-	D	26067274	26067282	1	10	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	1	6	2	12	14	12	14	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838917	11	26095635	CTA	C	420	PASS	-	-	-	-	-	Del	-	D	26095635	26095639	2	20	378.551	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	4	4	5	29	28	29	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759838938	11	26196478	TA	T	396	PASS	-	-	-	-	-	Del	-	D	26196478	26196487	1	20	378.551	-	-	8	1	1	-	-	./.	0	0	0	0	25	11	25	11	0	0	./.	4	3	4	3	14	20	14	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839006	11	26456931	TTA	T	300	PASS	ANO3	CCDS31447.1	r.?	-	-	Del	intronic	D	26456931	26456935	2	6	270.394	-	-	1	1	1	ANO3|CCDS31447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO3|CCDS31447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	0	5	1	22	18	22	18	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839098	11	26662966	AT	A	420	PASS	ANO3	CCDS31447.1	r.?	-	-	Del	intronic	D	26662966	26662974	1	8	378.551	-	-	7	1	1	ANO3|CCDS31447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO3|CCDS31447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	26	9	26	0	0	./.	0	7	0	7	5	26	5	26	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839205	11	26913216	TA	T	360	PASS	-	-	-	-	-	Del	-	D	26913216	26913224	1	16	324.472	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	3	4	24	24	24	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839261	11	27090570	CT	C	480	PASS	BBOX1	CCDS7862.1	r.?	-	-	Del	intronic	D	27090570	27090580	1	21	432.63	-	-	9	1	1	BBOX1|CCDS7862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BBOX1|CCDS7862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	6	2	7	3	28	15	28	15	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839452	11	27577946	AT	A	660	PASS	BDNFOS	ENST00000501663	r.?	-	-	Del	intronic	D	27577946	27577952	1	40	594.866	-	-	5	1	1	BDNFOS|ENST00000501663|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	BDNFOS|ENST00000501663|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	7	4	8	4	29	29	29	29	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839591	11	28151699	C	CA	360	PASS	METT5D1	CCDS31450.1	r.?	-	-	Ins	intronic	I	28151699	28151708	1	16	318.452	-	-	8	1	1	METT5D1|CCDS31450.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	METT5D1|CCDS31450.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	3	5	27	17	27	17	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839705	11	28530364	CA	C	300	PASS	-	-	-	-	-	Del	-	D	28530364	28530374	1	10	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	1	4	1	26	24	26	24	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839708	11	28534808	AT	A	540	PASS	-	-	-	-	-	Del	-	D	28534808	28534815	1	28	486.709	-	-	6	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	3	7	3	24	16	24	16	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839887	11	29167595	AT	A	300	PASS	-	-	-	-	-	Del	-	D	29167595	29167604	1	10	269.792	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	6	2	26	18	26	18	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759839903	11	29241389	GT	G	420	PASS	-	-	-	-	-	Del	-	D	29241389	29241399	1	18	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	5	2	5	29	31	29	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840113	11	30032939	AC	A	600	PASS	KCNA4	CCDS41629.1	r.2438delG	c.1286delG	p.G429fs*53	Del	frameshift	D	30032939	30032946	1	35	538.981	-	-	6	1	1	KCNA4|CCDS41629.1|r.2438delG|c.1286delG|p.G429fs*53|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	KCNA4|CCDS41629.1|r.2438delG|c.1286delG|p.G429fs*53|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	12	5	12	0	0	./.	6	4	9	5	32	26	32	26	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840134	11	30104134	GA	G	300	PASS	-	-	-	-	-	Del	-	D	30104134	30104142	1	10	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	1	4	1	5	17	23	17	23	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840367	11	30934966	C	CA	300	PASS	DCDC5	ENST00000406071	r.?	-	-	Ins	intronic	I	30934966	30934975	1	10	264.975	-	-	8	1	1	DCDC5|ENST00000406071|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCDC5|ENST00000406071|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	12	8	0	0	./.	1	4	4	6	33	25	33	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840368	11	30936386	CT	C	360	PASS	DCDC5	ENST00000406071	r.?	-	-	Del	intronic	D	30936386	30936396	1	16	324.472	-	-	9	1	1	DCDC5|ENST00000406071|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCDC5|ENST00000406071|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	3	3	5	25	24	25	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840415	11	31144622	CA	C	360	PASS	ENSG00000226746	ENST00000399333	r.?	-	-	Del	intronic	D	31144622	31144632	1	7	323.87	-	-	9	1	1	ENSG00000226746|ENST00000399333|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000226746|ENST00000399333|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	0	6	0	7	13	37	13	37	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840491	11	31504804	C	CA	300	PASS	IMMP1L	CCDS7874.1	r.?	-	-	Ins	intronic	I	31504804	31504812	1	10	267.383	-	-	7	1	1	IMMP1L|CCDS7874.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	IMMP1L|CCDS7874.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	1	6	1	25	6	25	6	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840555	11	31793979	CT	C	420	PASS	ELP4	CCDS7875.2	r.?	-	-	Del	intronic	D	31793979	31793988	1	20	378.551	-	-	8	1	1	ELP4|CCDS7875.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELP4|CCDS7875.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	3	7	5	30	33	30	33	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840599	11	31923472	GAA	G	480	PASS	-	-	-	-	-	Del	-	D	31923472	31923476	2	16	429.62	-	-	3	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	1	7	1	9	30	29	30	29	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840681	11	32239214	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	32239214	32239223	1	16	319.054	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	3	3	3	22	23	22	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840860	11	32749118	AT	A	360	PASS	CCDC73	CCDS41630.1	r.?	-	-	Del	intronic	D	32749118	32749128	1	15	323.87	-	-	9	1	1	CCDC73|CCDS41630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC73|CCDS41630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	2	4	2	26	15	26	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759840886	11	32872453	TA	T	420	PASS	PRRG4	CCDS7881.1	r.?	-	-	Del	intronic	D	32872453	32872462	1	14	377.949	-	-	8	1	1	PRRG4|CCDS7881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRRG4|CCDS7881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	1	6	1	7	9	33	9	33	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841008	11	33125029	GA	G	480	PASS	CSTF3	CCDS7883.1	r.?	-	-	Del	intronic	D	33125029	33125039	1	16	427.813	-	-	9	1	1	CSTF3|CCDS7883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSTF3|CCDS7883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	7	1	7	1	21	3	21	3	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841042	11	33202438	C	CA	420	PASS	AC131263.1	ENST00000500025	r.?	-	-	Ins	intronic	I	33202438	33202441	1	8	374.337	-	-	2	1	1	AC131263.1|ENST00000500025|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC131263.1|ENST00000500025|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	0	7	2	12	23	29	23	29	2	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841055	11	33241972	CT	C	660	PASS	-	-	-	-	-	Del	-	D	33241972	33241982	1	40	594.866	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	4	7	7	8	33	30	33	30	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841166	11	33592136	CA	C	420	PASS	C11orf41	CCDS44565.1	r.?	-	-	Del	intronic	D	33592136	33592143	1	18	378.551	-	-	6	1	1	C11orf41|CCDS44565.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf41|CCDS44565.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	2	5	3	7	29	26	29	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841351	11	34143729	GA	G	298	PASS	NAT10	CCDS7889.1	r.?	-	-	Del	intronic	D	34143729	34143739	1	15	321.462	-	-	9	1	1	NAT10|CCDS7889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAT10|CCDS7889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	4	4	5	22	23	22	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841377	11	34277377	AT	A	420	PASS	ABTB2	CCDS7890.1	r.?	-	-	Del	intronic	D	34277377	34277386	1	14	378.551	-	-	8	1	1	ABTB2|CCDS7890.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABTB2|CCDS7890.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	6	1	7	3	26	25	26	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841513	11	34610746	AT	A	480	PASS	-	-	-	-	-	Del	-	D	34610746	34610754	1	24	432.63	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	5	3	5	14	34	14	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841792	11	35380190	AT	A	300	PASS	SLC1A2	CCDS31459.1	r.?	-	-	Del	intronic	D	35380190	35380198	1	12	270.394	-	-	7	1	1	SLC1A2|CCDS31459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC1A2|CCDS31459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	3	2	4	2	18	11	18	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841844	11	35571122	GA	G	300	PASS	-	-	-	-	-	Del	-	D	35571122	35571130	1	12	266.179	-	-	7	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	4	2	27	22	27	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759841850	11	35627452	TC	T	300	PASS	-	-	-	-	-	Del	-	D	35627452	35627460	1	12	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	5	30	29	30	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842029	11	36197925	C	CT	600	PASS	LDLRAD3	CCDS31462.1	r.?	-	-	Ins	intronic	I	36197925	36197933	1	35	534.767	-	-	7	1	1	LDLRAD3|CCDS31462.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LDLRAD3|CCDS31462.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	6	4	6	31	25	31	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842038	11	36220458	GT	G	360	PASS	LDLRAD3	CCDS31462.1	r.?	-	-	Del	intronic	D	36220458	36220468	1	12	324.472	-	-	9	1	1	LDLRAD3|CCDS31462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDLRAD3|CCDS31462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	1	5	2	6	24	25	24	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842133	11	36525637	A	AT	420	PASS	TRAF6	CCDS7901.1	r.?	-	-	Ins	intronic	I	36525637	36525644	1	20	374.337	-	-	6	1	1	TRAF6|CCDS7901.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TRAF6|CCDS7901.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	3	4	3	4	47	22	47	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842151	11	36647274	AG	A	300	PASS	C11orf74	CCDS7904.1	r.?	-	-	Del	intronic	D	36647274	36647280	1	6	266.179	-	-	5	1	1	C11orf74|CCDS7904.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf74|CCDS7904.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	5	0	5	1	22	11	22	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842405	11	37699502	TA	T	540	PASS	-	-	-	-	-	Del	-	D	37699502	37699510	1	30	486.709	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	5	5	6	19	25	19	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842440	11	37848470	AT	A	600	PASS	-	-	-	-	-	Del	-	D	37848470	37848479	1	27	535.369	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	8	2	8	7	32	7	32	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842442	11	37856799	CA	C	300	PASS	-	-	-	-	-	Del	-	D	37856799	37856809	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	2	20	16	20	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759842523	11	38130154	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	38130154	38130169	2	12	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	2	25	19	25	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843129	11	39965185	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	39965185	39965195	1	12	317.85	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	5	1	6	1	34	13	34	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843136	11	40001751	GT	G	360	PASS	-	-	-	-	-	Del	-	D	40001751	40001761	1	7	316.646	-	-	9	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	6	0	7	0	29	0	29	0	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843139	11	40007902	CA	C	300	PASS	-	-	-	-	-	Del	-	D	40007902	40007910	1	12	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	6	21	26	21	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843157	11	40061768	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	40061768	40061775	1	20	374.337	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	9	0	0	./.	3	4	3	5	25	21	26	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843209	11	40284880	TC	T	300	PASS	LRRC4C	CCDS31464.1	r.?	-	-	Del	intronic	D	40284880	40284882	1	12	270.394	-	-	1	1	1	LRRC4C|CCDS31464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRRC4C|CCDS31464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	4	2	15	14	15	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843289	11	40554249	TG	T	300	PASS	-	-	-	-	-	Del	-	D	40554249	40554255	1	10	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	1	4	1	19	5	19	5	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843408	11	41002119	CA	C	420	PASS	-	-	-	-	-	Del	-	D	41002119	41002129	1	20	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	3	8	4	25	23	25	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843419	11	41027210	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	41027210	41027224	2	12	270.394	-	-	6	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	3	15	24	15	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843583	11	41545744	TA	T	360	PASS	-	-	-	-	-	Del	-	D	41545744	41545753	1	15	324.472	-	-	8	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	2	4	2	19	12	19	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843666	11	41736233	GA	G	300	PASS	-	-	-	-	-	Del	-	D	41736233	41736242	1	12	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	2	3	3	3	23	21	23	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843722	11	41926876	AT	A	360	PASS	-	-	-	-	-	Del	-	D	41926876	41926886	1	15	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	5	22	5	22	0	0	./.	4	2	4	3	25	33	25	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843774	11	42162423	CT	C	420	PASS	-	-	-	-	-	Del	-	D	42162423	42162433	1	20	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	4	3	6	3	28	25	28	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843829	11	42396352	CT	C	269	PASS	-	-	-	-	-	Del	-	D	42396352	42396360	1	6	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	5	0	5	2	30	16	30	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843841	11	42429645	GT	G	300	PASS	-	-	-	-	-	Del	-	D	42429645	42429654	1	12	269.792	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	3	16	26	16	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843884	11	42547807	AT	A	300	PASS	-	-	-	-	-	Del	-	D	42547807	42547815	1	12	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	3	2	3	2	31	25	31	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759843892	11	42580662	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	42580662	42580668	1	10	267.383	-	-	5	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	1	4	1	5	30	25	30	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844000	11	42939435	CA	C	420	PASS	-	-	-	-	-	Del	-	D	42939435	42939444	1	20	378.551	-	-	8	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	3	4	4	5	28	30	28	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844301	11	43793945	GT	G	300	PASS	HSD17B12	CCDS7905.1	r.?	-	-	Del	intronic	D	43793945	43793954	1	12	270.394	-	-	8	1	1	HSD17B12|CCDS7905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HSD17B12|CCDS7905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	2	3	4	3	25	26	25	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844334	11	43874301	AT	A	357	PASS	HSD17B12	CCDS7905.1	r.?	-	-	Del	intronic	D	43874301	43874311	1	15	324.472	-	-	9	1	1	HSD17B12|CCDS7905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HSD17B12|CCDS7905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	17	3	17	0	0	./.	4	2	6	3	27	29	27	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844402	11	44034833	CT	C	300	PASS	-	-	-	-	-	Del	-	D	44034833	44034842	1	10	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	1	27	28	27	28	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844429	11	44113803	CT	C	300	PASS	EXT2	CCDS7908.1	r.?	-	-	Del	upstream	D	44113803	44113812	1	10	270.394	-	-	8	1	1	EXT2|CCDS7908.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EXT2|CCDS7908.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	3	5	11	38	11	38	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844464	11	44260463	A	AT	480	PASS	EXT2	CCDS7908.1	r.?	-	-	Ins	intronic	I	44260463	44260473	1	21	427.814	-	-	9	1	1	EXT2|CCDS7908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EXT2|CCDS7908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	11	0	0	./.	6	2	12	3	36	28	36	28	12	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844715	11	45097520	TG	T	300	PASS	-	-	-	-	-	Del	-	D	45097520	45097528	1	12	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	4	3	27	23	27	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844717	11	45115282	TG	T	300	PASS	PRDM11	CCDS7912.1	r.?	-	-	Del	upstream	D	45115282	45115289	1	10	269.792	-	-	6	1	1	PRDM11|CCDS7912.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PRDM11|CCDS7912.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	8	6	8	0	0	./.	1	4	1	4	18	30	18	30	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844751	11	45262328	CT	C	480	PASS	SYT13	CCDS31470.1	r.4681delA	c.?	p.?	Del	3'UTR variant	D	45262328	45262334	1	25	432.63	-	-	5	1	1	SYT13|CCDS31470.1|r.4681delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SYT13|CCDS31470.1|r.4681delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	13	13	13	0	0	./.	4	4	5	5	26	19	26	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759844969	11	46062656	CT	C	660	PASS	PHF21A	CCDS44578.1	r.?	-	-	Del	intronic	D	46062656	46062664	1	40	594.866	-	-	7	1	1	PHF21A|CCDS44578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHF21A|CCDS44578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	7	5	8	23	29	23	29	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845043	11	46287981	GT	G	420	PASS	-	-	-	-	-	Del	-	D	46287981	46287991	1	20	377.949	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	3	4	24	24	24	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845079	11	46366897	GC	G	540	PASS	DGKZ	CCDS44580.1	r.?	-	-	Del	upstream	D	46366897	46366906	1	30	484.903	-	-	8	1	1	DGKZ|CCDS44580.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DGKZ|CCDS7918.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	5	4	5	24	28	24	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845274	11	46858877	T	TC	480	PASS	CKAP5	CCDS31477.1	r.?	-	-	Ins	intronic	I	46858877	46858885	1	24	427.211	-	-	7	1	1	CKAP5|CCDS31477.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CKAP5|CCDS31477.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	10	0	0	./.	3	5	3	5	15	21	15	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845481	11	47376433	G	GT	420	PASS	SPI1	CCDS44591.1	r.1383_1384insa	c.?	p.?	Ins	3'UTR variant	I	47376433	47376440	1	20	373.133	-	-	6	1	1	SPI1|CCDS44591.1|r.1383_1384insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SPI1|CCDS44591.1|r.1383_1384insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	5	6	26	34	27	34	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845529	11	47437474	GAC	G	269	PASS	SLC39A13	CCDS44592.1	r.1848_1849delAC	c.?	p.?	Del	3'UTR variant	D	47437474	47437478	2	12	260.761	-	-	1	1	1	SLC39A13|CCDS44592.1|r.1848_1849delAC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SLC39A13|CCDS44592.1|r.1848_1849delAC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	19	9	19	9	0	0	./.	3	2	6	2	28	31	28	31	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845587	11	47543319	CTA	C	420	PASS	CELF1	CCDS7938.1	r.?	-	-	Del	intronic	D	47543319	47543323	2	18	378.551	-	-	1	1	1	CELF1|CCDS7938.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CELF1|CCDS7938.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	18	4	18	0	0	./.	2	5	3	6	28	27	28	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845593	11	47550270	CA	C	360	PASS	CELF1	CCDS7938.1	r.?	-	-	Del	intronic	D	47550270	47550278	1	7	324.472	-	-	7	1	1	CELF1|CCDS7938.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CELF1|CCDS7938.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	0	6	3	8	24	24	24	24	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845647	11	47652982	CA	C	360	PASS	MTCH2	CCDS7943.1	r.?	-	-	Del	intronic	D	47652982	47652992	1	15	322.666	-	-	9	1	1	MTCH2|CCDS7943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTCH2|CCDS7943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	2	4	2	32	37	32	37	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845651	11	47667526	AG	A	360	PASS	MTCH2	CCDS7943.1	r.?	-	-	Del	upstream	D	47667526	47667532	1	16	324.472	-	-	5	1	1	MTCH2|CCDS7943.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MTCH2|CCDS7943.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	7	5	36	37	36	37	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845723	11	47780418	CG	C	360	PASS	FNBP4	CCDS41644.1	r.?	-	-	Del	intronic	D	47780418	47780426	1	12	324.472	-	-	7	1	1	FNBP4|CCDS41644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNBP4|CCDS41644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	1	5	2	10	19	26	19	26	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845829	11	47944492	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	47944492	47944495	1	12	319.656	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	5	1	6	9	21	9	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759845850	11	47984412	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	47984412	47984420	1	10	267.383	-	-	7	1	-	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	5	2	37	27	37	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846091	11	48463480	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	48463480	48463487	1	10	267.383	-	-	6	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	4	1	5	1	28	11	29	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846099	11	48489039	G	GAAC	360	PASS	-	-	-	-	-	Ins	-	I	48489039	48489057	3	12	311.829	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	1	5	2	5	32	24	32	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846114	11	48654722	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	48654722	48654731	1	16	314.237	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	6	4	21	29	21	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846133	11	48738866	CG	C	420	PASS	-	-	-	-	-	Del	-	D	48738866	48738868	1	18	378.551	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	2	6	6	31	32	31	32	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846184	11	48866519	TA	T	300	PASS	-	-	-	-	-	Del	-	D	48866519	48866525	1	12	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	3	2	7	2	30	25	30	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846282	11	49281713	CTCCT	C	300	PASS	-	-	-	-	-	Del	-	D	49281713	49281723	4	6	270.394	-	-	2	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	0	5	0	7	7	29	7	29	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846425	11	49811545	TC	T	360	PASS	ENSG00000205035	ENST00000357667	r.?	-	-	Del	intronic	D	49811545	49811550	1	15	324.472	-	-	4	1	1	ENSG00000205035|ENST00000357667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000205035|ENST00000357667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	5	3	33	16	33	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846644	11	50432212	CT	C	540	PASS	-	-	-	-	-	Del	-	D	50432212	50432220	1	30	486.709	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	4	6	4	23	21	23	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846770	11	51285217	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	51285217	51285225	1	7	320.86	-	-	7	1	1	-	-	./.	0	0	0	0	19	9	20	9	0	0	./.	0	6	8	7	34	30	35	30	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846773	11	51301854	CA	C	389	PASS	-	-	-	-	-	Del	-	D	51301854	51301863	1	20	378.551	-	-	8	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	3	4	28	28	28	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846927	11	54831219	CA	C	629	PASS	-	-	-	-	-	Del	-	D	54831219	54831223	1	42	594.866	-	-	3	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	5	6	5	8	23	28	23	28	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759846969	11	55029180	T	TA	263	PASS	TRIM48	CCDS7947.2	r.?	-	-	Ins	upstream	I	55029180	55029188	1	12	267.383	-	-	7	1	1	TRIM48|CCDS7947.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TRIM48|CCDS7947.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	9	5	9	5	0	0	./.	3	2	4	2	24	30	25	30	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847043	11	55352012	CT	C	420	PASS	-	-	-	-	-	Del	-	D	55352012	55352018	1	20	378.551	-	-	5	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	4	3	6	21	29	21	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847338	11	56584507	GT	G	300	PASS	-	-	-	-	-	Del	-	D	56584507	56584516	1	12	269.19	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	2	5	2	28	25	28	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847387	11	56826111	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	56826111	56826120	1	10	266.179	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	4	1	15	17	15	17	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847428	11	57062162	CCCT	C	329	PASS	TNKS1BP1	CCDS7951.1	r.?	-	-	Del	downstream	D	57062162	57062170	3	15	323.87	-	-	2	1	1	TNKS1BP1|CCDS7951.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TNKS1BP1|CCDS7951.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	3	4	21	26	21	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847630	11	57555689	CT	C	540	PASS	CTNND1	CCDS44604.1	r.?	-	-	Del	intronic	D	57555689	57555699	1	24	478.28	-	-	9	1	1	CTNND1|CCDS44604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTNND1|CCDS44604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	7	2	9	4	25	29	25	29	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847650	11	57619955	GA	G	299	PASS	-	-	-	-	-	Del	-	D	57619955	57619961	1	15	324.472	-	-	5	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	4	2	5	4	34	28	34	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847753	11	57943481	GA	G	300	PASS	OR9Q1	CCDS31543.1	r.?	-	-	Del	intronic	D	57943481	57943491	1	10	270.394	-	-	9	1	1	OR9Q1|CCDS31543.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OR9Q1|CCDS31543.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	4	1	34	19	34	19	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847839	11	58353813	C	CT	420	PASS	ZFP91	CCDS31553.1	r.?	-	-	Ins	intronic	I	58353813	58353822	1	20	374.337	-	-	8	1	1	ZFP91|CCDS31553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFP91|CCDS31553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	4	4	8	27	31	27	32	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847846	11	58370452	CA	C	360	PASS	ZFP91	CCDS31553.1	r.?	-	-	Del	intronic	D	58370452	58370462	1	15	324.472	-	-	9	1	1	ZFP91|CCDS31553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFP91|CCDS31553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	4	2	28	22	28	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847873	11	58431925	TG	T	420	PASS	-	-	-	-	-	Del	-	D	58431925	58431934	1	18	378.551	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	2	7	4	30	28	30	28	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759847943	11	58683997	GT	G	420	PASS	-	-	-	-	-	Del	-	D	58683997	58683999	1	20	378.551	-	-	1	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	3	4	4	6	23	29	23	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848059	11	59029989	ACTCT	A	300	PASS	ENSG00000225802	ENST00000455673	r.?	-	-	Del	downstream	D	59029989	59029998	4	12	270.394	-	-	4	1	1	ENSG00000225802|ENST00000455673|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000225802|ENST00000455673|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	4	8	4	8	0	0	./.	3	2	3	3	28	22	28	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848064	11	59045433	GA	G	360	PASS	ENSG00000214797	ENST00000399003	r.?	-	-	Del	intronic	D	59045433	59045442	1	15	324.472	-	-	8	1	1	ENSG00000214797|ENST00000399003|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000214797|ENST00000399003|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	2	5	6	16	16	16	16	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848093	11	59205506	GCT	G	420	PASS	-	-	-	-	-	Del	-	D	59205506	59205519	2	20	374.939	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	3	5	3	26	13	26	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848192	11	59576627	AT	A	300	PASS	MRPL16	CCDS7976.1	r.?	-	-	Del	intronic	D	59576627	59576636	1	12	270.394	-	-	8	1	1	MRPL16|CCDS7976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPL16|CCDS7976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	6	3	29	27	29	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848202	11	59619958	GT	G	360	PASS	TCN1	CCDS7978.1	r.?	-	-	Del	downstream	D	59619958	59619967	1	15	323.268	-	-	8	1	1	TCN1|CCDS7978.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	TCN1|CCDS7978.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	13	9	13	9	0	0	./.	2	4	3	4	17	28	17	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848305	11	59927028	AT	A	329	PASS	-	-	-	-	-	Del	-	D	59927028	59927038	1	7	323.87	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	0	6	2	6	8	21	8	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848340	11	60023693	TA	T	300	PASS	-	-	-	-	-	Del	-	D	60023693	60023703	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	2	3	4	3	25	22	25	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848534	11	60752513	CT	C	360	PASS	CD6	CCDS7999.1	r.?	-	-	Del	intronic	D	60752513	60752521	1	16	324.472	-	-	7	1	1	CD6|CCDS7999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD6|CCDS7999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	3	5	24	25	24	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848592	11	60924056	CA	C	360	PASS	VPS37C	CCDS31573.1	r.?	-	-	Del	intronic	D	60924056	60924066	1	12	324.472	-	-	9	1	1	VPS37C|CCDS31573.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	VPS37C|CCDS31573.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	1	7	2	28	22	28	22	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848607	11	60952847	CT	C	360	PASS	-	-	-	-	-	Del	-	D	60952847	60952857	1	16	320.86	-	-	9	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	3	4	3	20	20	20	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848660	11	61148761	AC	A	300	PASS	-	-	-	-	-	Del	-	D	61148761	61148767	1	10	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	23	4	23	4	0	0	./.	4	1	5	2	25	15	25	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848699	11	61213284	TAGA	T	660	PASS	SDHAF2	CCDS8007.1	r.?	-	-	Del	intronic	D	61213284	61213293	3	42	593.662	-	-	2	1	1	SDHAF2|CCDS8007.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDHAF2|CCDS8007.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	6	5	9	7	30	25	30	25	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848931	11	61887572	GT	G	300	PASS	INCENP	CCDS44624.1	r.?	-	-	Del	upstream	D	61887572	61887581	1	10	270.394	-	-	8	1	1	INCENP|CCDS44624.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	INCENP|CCDS44624.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	13	7	13	0	0	./.	4	1	4	1	21	20	21	20	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759848988	11	62017056	CT	C	300	PASS	SCGB1D2	CCDS8017.1	r.?	-	-	Del	downstream	D	62017056	62017066	1	12	269.792	-	-	9	1	1	SCGB1D2|CCDS8017.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SCGB1D2|CCDS8017.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	5	2	23	19	23	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849090	11	62244111	CA	C	420	PASS	AHNAK	CCDS44625.1	r.?	-	-	Del	intronic	D	62244111	62244121	1	18	378.551	-	-	9	1	1	AHNAK|CCDS44625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHNAK|CCDS44625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	2	5	2	29	25	29	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849287	11	62663201	AT	A	389	PASS	-	-	-	-	-	Del	-	D	62663201	62663210	1	20	378.551	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	5	4	31	38	31	38	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849411	11	63240229	AT	A	300	PASS	HRASLS5	CCDS8044.1	r.?	-	-	Del	intronic	D	63240229	63240235	1	12	270.394	-	-	5	1	1	HRASLS5|CCDS8044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HRASLS5|CCDS8044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	6	2	22	9	22	9	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849558	11	63618026	AT	A	397	PASS	MARK2	ENST00000508192	r.?	-	-	Del	intronic	D	63618026	63618033	1	18	378.551	-	-	6	1	1	MARK2|ENST00000508192|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARK2|ENST00000508192|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	2	6	2	36	8	36	8	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849735	11	64129350	TC	T	329	PASS	RPS6KA4	CCDS8073.1	r.848delC	c.783delC	p.P263fs*112	Del	frameshift	D	64129350	64129357	1	16	321.462	-	-	6	1	1	RPS6KA4|CCDS8073.1|r.848delC|c.783delC|p.P263fs*112|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	RPS6KA4|CCDS8073.1|r.848delC|c.783delC|p.P263fs*112|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	3	8	3	8	0	0	./.	3	3	4	4	18	26	18	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849921	11	64658054	TG	T	300	PASS	ATG2A	CCDS31602.1	r.?	-	-	Del	downstream	D	64658054	64658062	1	12	270.394	-	-	7	1	1	ATG2A|CCDS31602.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EHD1|ENST00000457202|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	5	3	36	27	36	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849984	11	64837946	AT	A	300	PASS	ENSG00000227162	ENST00000438878	r.?	-	-	Del	upstream	D	64837946	64837956	1	12	269.19	-	-	9	1	1	ENSG00000227162|ENST00000438878|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000227162|ENST00000438878|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	2	23	28	23	28	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759849993	11	64862268	CA	C	660	PASS	C11orf2	CCDS8093.1	r.?	-	-	Del	upstream	D	64862268	64862278	1	42	594.866	-	-	9	1	1	C11orf2|CCDS8093.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C11orf2|CCDS8093.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	4	13	4	13	0	0	./.	6	5	9	6	24	29	24	29	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850022	11	64981480	TC	T	360	PASS	CAPN1	CCDS44644.1	r.?	-	-	Del	downstream	D	64981480	64981489	1	15	324.472	-	-	8	1	1	CAPN1|CCDS44644.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC22A20|ENST00000454680|r.173delC|c.132delC|p.H47fs*21|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	5	7	5	0	0	./.	4	2	4	2	22	20	22	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850051	11	65070992	CA	C	353	PASS	-	-	-	-	-	Del	-	D	65070992	65071002	1	16	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	3	3	3	21	26	21	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850084	11	65132222	CT	C	286	PASS	-	-	-	-	-	Del	-	D	65132222	65132232	1	16	323.268	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	3	4	3	28	27	28	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850120	11	65247408	TG	T	300	PASS	-	-	-	-	-	Del	-	D	65247408	65247415	1	10	270.394	-	-	6	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	1	5	1	23	18	23	18	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850134	11	65284933	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	65284933	65284936	1	15	319.656	-	-	2	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	4	2	4	3	17	3	17	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850337	11	65795300	AC	A	389	PASS	CATSPER1	CCDS8127.1	r.?	-	-	Del	upstream	D	65795300	65795307	1	18	378.551	-	-	6	1	1	CATSPER1|CCDS8127.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CATSPER1|CCDS8127.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	10	17	10	0	0	./.	5	2	5	2	34	21	34	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850411	11	65993642	CA	C	360	PASS	PACS1	CCDS8129.1	r.?	-	-	Del	intronic	D	65993642	65993650	1	16	324.472	-	-	7	1	1	PACS1|CCDS8129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PACS1|CCDS8129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	3	4	4	22	29	22	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850494	11	66203149	GA	G	300	PASS	MRPL11	CCDS8139.1	r.992delU	c.?	p.?	Del	3'UTR variant	D	66203149	66203158	1	12	270.394	-	-	8	1	1	MRPL11|CCDS8139.1|r.992delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MRPL11|CCDS8139.1|r.992delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	7	16	24	16	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850560	11	66394755	AT	A	420	PASS	RBM14	CCDS8147.1	r.2766delU	c.?	p.?	Del	3'UTR variant	D	66394755	66394764	1	18	378.551	-	-	8	1	1	RBM14|CCDS8147.1|r.2766delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RBM14|CCDS8147.1|r.2766delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	11	14	11	0	0	./.	5	2	7	3	34	25	34	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850584	11	66449542	G	GT	300	PASS	SPTBN2	CCDS8150.1	r.?	-	-	Ins	downstream	I	66449542	66449549	1	10	249.924	-	-	6	1	1	SPTBN2|CCDS8150.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	RBM4B|CCDS8149.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	8	12	8	0	0	./.	4	1	5	3	28	20	28	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850684	11	66797185	TG	T	300	PASS	SYT12	CCDS8154.1	r.?	-	-	Del	intronic	D	66797185	66797190	1	12	269.19	-	-	4	1	1	SYT12|CCDS8154.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYT12|CCDS8154.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	3	5	4	28	35	28	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850787	11	67090855	AAGG	A	569	PASS	-	-	-	-	-	Del	-	D	67090855	67090861	3	32	539.583	-	-	1	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	3	7	6	8	23	28	23	28	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850806	11	67160084	G	GC	360	PASS	RAD9A	CCDS8159.1	r.?	-	-	Ins	intronic	I	67160084	67160090	1	15	320.86	-	-	5	1	1	RAD9A|CCDS8159.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAD9A|CCDS8159.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	2	4	3	5	28	28	28	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850822	11	67239069	A	AT	420	PASS	TMEM134	CCDS8167.1	r.?	-	-	Ins	upstream	I	67239069	67239072	1	18	374.337	-	-	2	1	1	TMEM134|CCDS8167.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TMEM134|CCDS8167.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	16	12	16	12	0	0	./.	2	5	4	5	23	23	23	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759850927	11	67541959	G	GT	480	PASS	AP003716.5	ENST00000509880	r.?	-	-	Ins	upstream	I	67541959	67541969	1	21	425.405	-	-	9	1	1	AP003716.5|ENST00000509880|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	AP003716.5|ENST00000509880|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	15	10	15	10	0	0	./.	6	2	7	5	31	34	31	34	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851011	11	67751568	AG	A	461	PASS	-	-	-	-	-	Del	-	D	67751568	67751577	1	30	482.494	-	-	8	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	4	5	7	7	15	20	15	20	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851089	11	67921984	GA	G	360	PASS	SUV420H1	CCDS31623.1	r.?	-	-	Del	downstream	D	67921984	67921992	1	16	324.472	-	-	7	1	1	SUV420H1|CCDS31623.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	SUV420H1|CCDS31623.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	13	6	13	6	0	0	./.	3	3	3	3	30	28	30	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851090	11	67922398	T	TA	540	PASS	SUV420H1	CCDS31623.1	r.5768_5769insu	c.?	p.?	Ins	3'UTR variant	I	67922398	67922405	1	28	481.29	-	-	6	1	1	SUV420H1|CCDS31623.1|r.5768_5769insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SUV420H1|CCDS31623.1|r.5768_5769insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	11	14	11	0	0	./.	6	3	8	5	29	30	30	30	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851110	11	67977764	TTAAC	T	298	PASS	SUV420H1	CCDS31623.1	r.?	-	-	Del	intronic	D	67977764	67977771	4	15	318.452	-	-	1	1	1	SUV420H1|CCDS31623.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SUV420H1|CCDS31623.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	4	2	6	3	21	19	21	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851233	11	68284335	G	GT	480	PASS	SAPS3	CCDS8182.1	r.?	-	-	Ins	intronic	I	68284335	68284345	1	21	427.814	-	-	9	1	1	SAPS3|CCDS8182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SAPS3|CCDS8182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	11	0	0	./.	6	2	6	3	27	27	28	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851278	11	68399094	CA	C	360	PASS	-	-	-	-	-	Del	-	D	68399094	68399104	1	12	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	5	1	6	3	22	29	22	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851287	11	68411118	CA	C	420	PASS	-	-	-	-	-	Del	-	D	68411118	68411127	1	18	378.551	-	-	8	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	5	2	9	2	38	17	38	17	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851292	11	68418286	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	68418286	68418294	1	20	357.479	-	-	7	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	4	5	4	25	22	25	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851328	11	68524964	GA	G	420	PASS	CPT1A	CCDS8185.1	r.2639delU	c.?	p.?	Del	3'UTR variant	D	68524964	68524974	1	20	378.551	-	-	9	1	1	CPT1A|CCDS8185.1|r.2639delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CPT1A|CCDS8185.1|r.2639delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	14	10	14	0	0	./.	4	3	5	5	32	24	32	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851355	11	68581561	CG	C	357	PASS	CPT1A	CCDS8185.1	r.?	-	-	Del	intronic	D	68581561	68581570	1	12	322.064	-	-	8	1	1	CPT1A|CCDS8185.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPT1A|CCDS8185.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	1	5	5	6	38	30	38	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851591	11	69240047	CA	C	300	PASS	-	-	-	-	-	Del	-	D	69240047	69240057	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	3	2	3	3	23	14	23	14	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851626	11	69409143	AC	A	360	PASS	-	-	-	-	-	Del	-	D	69409143	69409149	1	7	322.666	-	-	5	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	6	0	8	5	27	27	27	27	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851775	11	69812171	CA	C	300	PASS	-	-	-	-	-	Del	-	D	69812171	69812181	1	12	264.975	-	-	9	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	2	3	4	5	26	20	26	20	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759851906	11	70114815	A	AT	300	PASS	PPFIA1	CCDS31627.1	r.?	-	-	Ins	upstream	I	70114815	70114822	1	12	267.383	-	-	6	1	1	PPFIA1|CCDS31627.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PPFIA1|CCDS31627.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	2	21	26	21	29	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852181	11	70853567	CA	C	300	PASS	SHANK2	ENST00000338508	r.?	-	-	Del	intronic	D	70853567	70853577	1	10	269.792	-	-	9	1	-	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	1	4	1	6	24	23	24	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852208	11	70892867	GC	G	420	PASS	SHANK2	ENST00000413503	r.?	-	-	Del	intronic	D	70892867	70892875	1	20	376.143	-	-	7	1	1	SHANK2|ENST00000413503|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SHANK2|ENST00000413503|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	3	5	3	14	24	14	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852337	11	71265819	TGA	T	418	PASS	KRTAP5-10	ENST00000422553	r.?	-	-	Del	intronic	D	71265819	71265825	2	24	431.426	-	-	2	1	1	KRTAP5-10|ENST00000422553|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KRTAP5-10|ENST00000422553|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	5	3	5	20	31	20	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852509	11	71697649	TA	T	360	PASS	RNF121	CCDS8203.1	r.?	-	-	Del	intronic	D	71697649	71697658	1	12	322.064	-	-	8	1	1	RNF121|CCDS8203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF121|CCDS8203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	1	5	3	6	19	24	19	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852619	11	72061863	CT	C	420	PASS	CLPB	CCDS8215.1	r.?	-	-	Del	intronic	D	72061863	72061870	1	20	378.551	-	-	6	1	1	CLPB|CCDS8215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLPB|CCDS8215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	3	5	3	17	18	17	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852653	11	72222792	CT	C	360	PASS	-	-	-	-	-	Del	-	D	72222792	72222801	1	15	324.472	-	-	8	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	2	4	3	4	28	38	28	38	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852658	11	72242725	ACT	A	660	PASS	-	-	-	-	-	Del	-	D	72242725	72242731	2	42	594.866	-	-	2	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	5	6	5	23	25	23	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852732	11	72515260	TA	T	720	PASS	-	-	-	-	-	Del	-	D	72515260	72515268	1	48	644.731	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	7	5	8	6	33	32	33	32	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852857	11	72944098	TG	T	360	PASS	P2RY2	CCDS8219.1	r.?	-	-	Del	intronic	D	72944098	72944106	1	16	323.268	-	-	7	1	1	P2RY2|CCDS8219.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	P2RY2|CCDS8219.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	3	3	3	4	23	15	23	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759852998	11	73418756	CT	C	420	PASS	RAB6A	CCDS8223.1	r.?	-	-	Del	intronic	D	73418756	73418765	1	18	378.551	-	-	8	1	1	RAB6A|CCDS8223.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB6A|CCDS8223.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	2	5	2	5	22	24	22	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759853380	11	74413135	CA	C	480	PASS	CHRDL2	CCDS8234.1	r.?	-	-	Del	intronic	D	74413135	74413144	1	21	432.63	-	-	8	1	1	CHRDL2|CCDS8234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHRDL2|CCDS8234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	6	5	9	34	27	34	27	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759853409	11	74513972	TG	T	360	PASS	RNF169	CCDS41691.1	r.?	-	-	Del	intronic	D	74513972	74513982	1	15	324.472	-	-	9	1	1	RNF169|CCDS41691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF169|CCDS41691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	2	4	4	5	33	26	33	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759853512	11	74892426	A	AG	300	PASS	SLCO2B1	CCDS8235.1	r.?	-	-	Ins	intronic	I	74892426	74892427	1	10	267.383	-	-	0	1	-	SLCO2B1|CCDS8235.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLCO2B1|CCDS8235.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	18	0	0	./.	1	4	2	5	26	25	27	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759853583	11	75119627	GT	G	300	PASS	RPS3	CCDS8236.1	r.?	-	-	Del	downstream	D	75119627	75119636	1	12	270.394	-	-	8	1	1	RPS3|CCDS8236.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RPS3|CCDS8236.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	3	3	24	30	24	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759853617	11	75246110	CT	C	660	PASS	-	-	-	-	-	Del	-	D	75246110	75246120	1	42	592.458	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	6	5	7	7	24	31	24	31	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759853771	11	75881791	CG	C	300	PASS	-	-	-	-	-	Del	-	D	75881791	75881798	1	6	269.792	-	-	6	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	0	8	2	23	22	23	22	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854024	11	76701705	T	TA	300	PASS	ACER3	CCDS8247.1	r.?	-	-	Ins	intronic	I	76701705	76701711	1	12	267.383	-	-	5	1	1	ACER3|CCDS8247.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACER3|CCDS8247.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	6	2	23	21	24	21	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854038	11	76739634	G	GA	360	PASS	ACER3	CCDS8247.1	r.?	-	-	Ins	downstream	I	76739634	76739644	1	15	320.258	-	-	9	1	1	ACER3|CCDS8247.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ACER3|CCDS8247.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	15	15	15	0	0	./.	2	4	2	4	16	31	16	32	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854227	11	77277211	GTC	G	360	PASS	RNU7-59P	ENST00000459101	r.?	-	-	Del	downstream	D	77277211	77277225	2	12	322.666	-	-	6	1	1	RNU7-59P|ENST00000459101|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	RNU7-59P|ENST00000459101|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	11	17	11	17	0	0	./.	1	5	1	8	13	31	13	31	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854329	11	77468183	GA	G	269	PASS	RSF1	CCDS8253.1	r.?	-	-	Del	intronic	D	77468183	77468191	1	12	270.394	-	-	7	1	1	RSF1|CCDS8253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSF1|CCDS8253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	3	4	32	31	32	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854375	11	77566539	CT	C	420	PASS	C11orf67	CCDS8254.1	r.?	-	-	Del	intronic	D	77566539	77566549	1	20	378.551	-	-	9	1	1	C11orf67|CCDS8254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf67|CCDS8254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	19	0	0	./.	3	4	4	5	22	20	22	20	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854378	11	77572837	CT	C	300	PASS	C11orf67	CCDS8254.1	r.?	-	-	Del	intronic	D	77572837	77572846	1	12	270.394	-	-	8	1	1	C11orf67|CCDS8254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf67|CCDS8254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	3	3	24	34	24	34	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854404	11	77622089	G	GA	370	PASS	INTS4	CCDS31644.1	r.?	-	-	Ins	intronic	I	77622089	77622096	1	20	373.735	-	-	6	1	1	INTS4|CCDS31644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INTS4|ENST00000433818|r.1821_1822insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	14	14	14	14	0	0	./.	4	3	4	3	33	21	33	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854438	11	77690520	TA	T	360	PASS	INTS4	CCDS31644.1	r.?	-	-	Del	intronic	D	77690520	77690528	1	15	319.656	-	-	7	1	1	INTS4|CCDS31644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INTS4|CCDS31644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	2	6	2	32	31	32	31	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854506	11	77821033	TC	T	300	PASS	ALG8	CCDS41692.1	r.?	-	-	Del	intronic	D	77821033	77821040	1	10	269.19	-	-	6	1	1	ALG8|CCDS41692.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALG8|CCDS41692.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	5	1	24	17	24	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854520	11	77843196	C	CA	540	PASS	ALG8	CCDS41692.1	r.?	-	-	Ins	intronic	I	77843196	77843197	1	28	481.29	-	-	0	1	1	ALG8|CCDS41692.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALG8|CCDS41692.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	8	0	0	./.	3	6	4	7	17	27	17	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854609	11	78108237	CA	C	300	PASS	GAB2	CCDS8259.1	r.?	-	-	Del	intronic	D	78108237	78108246	1	10	270.394	-	-	8	1	1	GAB2|CCDS8259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAB2|CCDS8259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	7	2	30	11	30	11	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854671	11	78310941	CT	C	304	PASS	-	-	-	-	-	Del	-	D	78310941	78310951	1	20	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	3	5	4	25	22	25	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854932	11	79431826	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	79431826	79431835	1	20	374.337	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	15	0	0	./.	3	4	3	5	27	26	27	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759854972	11	79680337	GA	G	360	PASS	-	-	-	-	-	Del	-	D	79680337	79680347	1	15	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	4	2	5	4	25	28	25	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855055	11	79972733	GA	G	360	PASS	-	-	-	-	-	Del	-	D	79972733	79972743	1	15	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	4	3	6	18	26	18	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855192	11	80472216	CT	C	420	PASS	-	-	-	-	-	Del	-	D	80472216	80472219	1	20	378.551	-	-	2	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	3	6	4	25	14	25	14	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855286	11	80824317	CT	C	360	PASS	-	-	-	-	-	Del	-	D	80824317	80824327	1	12	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	1	5	1	29	17	29	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855415	11	81161411	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	81161411	81161421	1	21	427.814	-	-	9	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	2	6	2	28	24	28	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855477	11	81321256	GT	G	360	PASS	-	-	-	-	-	Del	-	D	81321256	81321264	1	16	324.472	-	-	7	1	1	-	-	./.	0	0	0	0	3	12	3	12	0	0	./.	3	3	4	5	22	27	22	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855675	11	82020081	GTAAT	G	397	PASS	AP002802.1	ENST00000500502	r.?	-	-	Del	intronic	D	82020081	82020089	4	20	377.949	-	-	1	1	1	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	3	3	23	28	24	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855833	11	82424162	TA	T	300	PASS	-	-	-	-	-	Del	-	D	82424162	82424170	1	12	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	8	4	24	11	24	11	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759855964	11	82966930	TA	T	540	PASS	ANKRD42	CCDS8265.1	r.1570delA	c.?	p.?	Del	3'UTR variant	D	82966930	82966940	1	28	486.709	-	-	9	1	1	ANKRD42|CCDS8265.1|r.1570delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ANKRD42|ENST00000260047|r.2304delA|c.2304delA|p.K771fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	9	13	9	0	0	./.	3	6	3	8	13	30	13	30	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856153	11	83594236	CT	C	300	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	83594236	83594245	1	6	270.394	-	-	8	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	0	5	1	6	2	17	2	17	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856271	11	84122446	TA	T	360	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	84122446	84122453	1	12	323.87	-	-	6	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	1	5	2	5	21	22	21	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856372	11	84537352	AT	A	300	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	84537352	84537360	1	10	270.394	-	-	7	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	5	1	16	5	16	5	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856415	11	84688094	CT	C	300	PASS	DLG2	CCDS44690.1	r.?	-	-	Del	intronic	D	84688094	84688104	1	12	270.394	-	-	9	1	1	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	2	3	2	6	16	26	16	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856421	11	84713205	AT	A	480	PASS	DLG2	CCDS44690.1	r.?	-	-	Del	intronic	D	84713205	84713215	1	24	430.222	-	-	9	1	1	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	5	3	6	6	33	24	33	24	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856490	11	85017624	CT	C	660	PASS	DLG2	CCDS44690.1	r.?	-	-	Del	intronic	D	85017624	85017633	1	36	594.264	-	-	8	1	1	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	8	5	8	33	30	33	30	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856886	11	86360726	AAAT	A	538	PASS	ME3	CCDS8277.1	r.?	-	-	Del	intronic	D	86360726	86360733	3	32	538.379	-	-	2	1	1	ME3|CCDS8277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ME3|CCDS8277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	7	3	7	32	29	32	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856992	11	86657482	AAAG	A	329	PASS	FZD4	CCDS8279.1	r.6619_6621delCUU	c.?	p.?	Del	3'UTR variant	D	86657482	86657493	3	15	324.472	-	-	3	1	1	FZD4|CCDS8279.1|r.6619_6621delCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FZD4|CCDS8279.1|r.6619_6621delCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	6	9	6	0	0	./.	2	4	3	5	18	32	18	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759856999	11	86690587	AG	A	480	PASS	AP001528.1	ENST00000499504	r.?	-	-	Del	intronic	D	86690587	86690593	1	24	430.222	-	-	5	1	1	AP001528.1|ENST00000499504|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP001528.1|ENST00000499504|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	5	7	6	20	32	20	32	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759857242	11	87457243	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	87457243	87457250	1	12	267.383	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	3	23	20	25	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759857266	11	87562286	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	87562286	87562288	1	18	374.337	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	5	3	6	22	32	22	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759857352	11	87928924	CT	C	300	PASS	-	-	-	-	-	Del	-	D	87928924	87928934	1	10	269.792	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	1	4	1	19	14	19	14	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759857745	11	89176569	AG	A	360	PASS	NOX4	CCDS8285.1	r.?	-	-	Del	intronic	D	89176569	89176579	1	15	320.86	-	-	9	1	1	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	4	2	4	24	27	24	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858075	11	90416588	AT	A	389	PASS	-	-	-	-	-	Del	-	D	90416588	90416597	1	20	377.949	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	4	4	8	10	8	10	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858182	11	90730041	TA	T	300	PASS	-	-	-	-	-	Del	-	D	90730041	90730051	1	6	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	0	6	0	24	2	24	2	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858186	11	90739916	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	90739916	90739923	1	20	374.337	-	-	6	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	4	3	5	3	22	22	22	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858247	11	90931308	GA	G	420	PASS	-	-	-	-	-	Del	-	D	90931308	90931316	1	20	378.551	-	-	7	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	3	6	3	31	20	31	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858380	11	91594809	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	91594809	91594816	1	30	481.29	-	-	6	1	1	-	-	./.	0	0	0	0	19	7	19	8	0	0	./.	5	4	7	5	26	32	26	32	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858562	11	92166448	GA	G	360	PASS	FAT3	CCDS44706.1	r.?	-	-	Del	intronic	D	92166448	92166457	1	16	324.472	-	-	8	1	1	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	3	5	25	28	25	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858592	11	92260558	CA	C	389	PASS	FAT3	CCDS44706.1	r.?	-	-	Del	intronic	D	92260558	92260566	1	18	378.551	-	-	7	1	1	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	24	13	24	0	0	./.	2	5	2	6	28	25	28	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858632	11	92384729	CT	C	300	PASS	FAT3	CCDS44706.1	r.?	-	-	Del	intronic	D	92384729	92384738	1	12	267.986	-	-	8	1	1	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	5	3	33	22	33	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858734	11	92819257	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	92819257	92819267	1	16	319.656	-	-	9	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	5	4	30	20	30	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858895	11	93349574	CA	C	420	PASS	-	-	-	-	-	Del	-	D	93349574	93349584	1	18	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	3	7	15	28	15	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759858928	11	93441696	CT	C	360	PASS	KIAA1731	CCDS44708.1	r.?	-	-	Del	intronic	D	93441696	93441706	1	12	324.472	-	-	9	1	1	KIAA1731|CCDS44708.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1731|CCDS44708.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	1	5	3	6	15	22	15	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859076	11	93896943	GT	G	360	PASS	PANX1	CCDS8296.1	r.?	-	-	Del	intronic	D	93896943	93896951	1	15	323.87	-	-	7	1	1	PANX1|CCDS8296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PANX1|CCDS8296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	4	2	5	2	18	27	18	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859090	11	93947705	CT	C	600	PASS	-	-	-	-	-	Del	-	D	93947705	93947714	1	32	540.787	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	7	5	9	30	22	30	22	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859147	11	94141214	GT	G	523	PASS	-	-	-	-	-	Del	-	D	94141214	94141224	1	30	486.709	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	4	7	5	31	29	31	29	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859198	11	94336210	CT	C	480	PASS	PIWIL4	CCDS31656.1	r.?	-	-	Del	intronic	D	94336210	94336217	1	25	432.63	-	-	6	1	1	PIWIL4|CCDS31656.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIWIL4|CCDS31656.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	4	6	5	28	25	28	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859248	11	94532231	AT	A	420	PASS	AMOTL1	CCDS44712.1	r.?	-	-	Del	intronic	D	94532231	94532241	1	20	377.949	-	-	9	1	1	AMOTL1|CCDS44712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AMOTL1|CCDS44712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	5	4	23	24	23	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859259	11	94576486	AT	A	420	PASS	AMOTL1	CCDS44712.1	r.?	-	-	Del	intronic	D	94576486	94576495	1	20	378.551	-	-	8	1	1	AMOTL1|CCDS44712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AMOTL1|CCDS44712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	3	4	3	18	21	18	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859319	11	94771117	AG	A	355	PASS	-	-	-	-	-	Del	-	D	94771117	94771123	1	18	378.551	-	-	5	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	2	6	31	16	31	16	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859534	11	95521369	A	AT	420	PASS	FAM76B	CCDS41700.1	r.?	-	-	Ins	intronic	I	95521369	95521379	1	18	368.316	-	-	9	1	1	FAM76B|CCDS41700.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM76B|CCDS41700.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	26	11	26	0	0	./.	2	5	4	9	29	38	29	38	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859708	11	95919753	CA	C	360	PASS	MAML2	CCDS44714.1	r.?	-	-	Del	intronic	D	95919753	95919763	1	15	324.472	-	-	9	1	1	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	4	4	7	27	33	27	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859800	11	96210142	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	96210142	96210151	1	12	267.383	-	-	8	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	2	3	3	3	24	32	24	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859897	11	96756729	GA	G	300	PASS	-	-	-	-	-	Del	-	D	96756729	96756738	1	12	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	4	5	23	26	23	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759859916	11	96827411	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	96827411	96827426	2	6	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	0	5	0	30	2	30	2	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860189	11	97855742	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	97855742	97855752	1	12	313.635	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	5	1	7	2	26	25	26	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860380	11	98336902	AT	A	420	PASS	-	-	-	-	-	Del	-	D	98336902	98336912	1	14	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	1	6	2	5	13	32	13	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860407	11	98457253	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	98457253	98457261	1	28	481.29	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	3	6	5	30	20	30	20	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860642	11	99243065	CA	C	480	PASS	-	-	-	-	-	Del	-	D	99243065	99243074	1	24	432.63	-	-	8	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	5	4	8	30	33	30	33	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860684	11	99349378	AT	A	300	PASS	-	-	-	-	-	Del	-	D	99349378	99349388	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	3	5	7	28	7	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860917	11	100002375	TA	T	360	PASS	CNTN5	ENST00000279463	r.?	-	-	Del	intronic	D	100002375	100002384	1	16	323.87	-	-	8	1	1	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	3	4	4	23	28	23	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759860981	11	100231842	GT	G	420	PASS	CNTN5	ENST00000279463	r.?	-	-	Del	downstream	D	100231842	100231848	1	18	378.551	-	-	5	1	1	CNTN5|ENST00000279463|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CNTN5|ENST00000279463|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	16	10	16	0	0	./.	2	5	4	9	26	37	26	37	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861109	11	100726459	TTAAA	T	327	PASS	ENSG00000165895	CCDS44715.1	r.?	-	-	Del	intronic	D	100726459	100726467	4	14	378.551	-	-	1	1	1	ENSG00000165895|CCDS44715.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000165895|CCDS44715.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	1	6	1	9	8	27	8	27	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861323	11	101417490	A	AT	360	PASS	TRPC6	CCDS8311.1	r.?	-	-	Ins	intronic	I	101417490	101417498	1	7	320.86	-	-	7	1	1	TRPC6|CCDS8311.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPC6|CCDS8311.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	13	25	13	0	0	./.	0	6	1	8	5	30	5	31	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861341	11	101505839	GA	G	300	PASS	-	-	-	-	-	Del	-	D	101505839	101505849	1	10	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	1	4	1	4	9	29	9	29	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861541	11	102360984	CA	C	300	PASS	-	-	-	-	-	Del	-	D	102360984	102360990	1	10	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	3	5	12	20	12	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861634	11	102638813	CT	C	600	PASS	MMP10	CCDS8321.1	r.?	-	-	Del	downstream	D	102638813	102638823	1	32	540.787	-	-	9	1	1	MMP10|CCDS8321.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MMP10|CCDS8321.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	21	6	21	0	0	./.	7	3	7	3	28	25	28	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861651	11	102721956	T	TTA	360	PASS	-	-	-	-	-	Ins	-	I	102721956	102721968	2	15	315.442	-	-	5	1	1	-	-	./.	0	0	0	0	16	12	17	12	0	0	./.	2	4	3	5	38	27	38	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861661	11	102744329	C	CA	360	PASS	MMP12	ENST00000326227	r.?	-	-	Ins	intronic	I	102744329	102744338	1	7	320.86	-	-	8	1	-	MMP12|ENST00000326227|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MMP12|ENST00000326227|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	24	13	24	0	0	./.	0	6	0	6	23	34	23	34	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861721	11	102963275	GT	G	480	PASS	DCUN1D5	CCDS8325.1	r.?	-	-	Del	upstream	D	102963275	102963284	1	24	429.018	-	-	8	1	1	DCUN1D5|CCDS8325.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DCUN1D5|CCDS8325.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	8	7	8	0	0	./.	5	3	5	4	35	21	35	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861987	11	103697188	GT	G	300	PASS	-	-	-	-	-	Del	-	D	103697188	103697197	1	12	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	4	3	29	11	29	11	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759861991	11	103732800	CT	C	360	PASS	-	-	-	-	-	Del	-	D	103732800	103732810	1	16	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	4	4	21	27	21	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862171	11	104594864	GT	G	300	PASS	-	-	-	-	-	Del	-	D	104594864	104594873	1	6	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	0	5	0	6	19	26	19	26	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862188	11	104654694	AG	A	300	PASS	-	-	-	-	-	Del	-	D	104654694	104654700	1	12	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	3	2	31	24	31	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862342	11	105196212	TC	T	300	PASS	-	-	-	-	-	Del	-	D	105196212	105196218	1	12	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	4	2	15	20	15	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862410	11	105425714	AT	A	480	PASS	-	-	-	-	-	Del	-	D	105425714	105425724	1	21	432.63	-	-	9	1	1	-	-	./.	0	0	0	0	2	12	2	12	0	0	./.	6	2	7	6	26	28	26	28	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862458	11	105611621	C	CT	360	PASS	GRIA4	CCDS41706.1	r.?	-	-	Ins	intronic	I	105611621	105611626	1	16	320.86	-	-	4	1	1	GRIA4|CCDS41706.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIA4|CCDS41706.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	5	5	23	33	24	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862519	11	105884730	TTAAAG	T	298	PASS	KIAA1826	CCDS31663.1	r.?	-	-	Del	intronic	D	105884730	105884740	5	7	324.472	-	-	1	1	1	KIAA1826|CCDS31663.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1826|CCDS31663.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	0	6	1	6	14	26	14	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862578	11	106072238	GT	G	360	PASS	-	-	-	-	-	Del	-	D	106072238	106072247	1	16	324.472	-	-	8	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	4	6	23	27	23	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862579	11	106073554	CT	C	300	PASS	-	-	-	-	-	Del	-	D	106073554	106073564	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	2	3	3	3	28	21	28	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862587	11	106085856	TA	T	360	PASS	-	-	-	-	-	Del	-	D	106085856	106085863	1	15	322.064	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	6	2	21	13	21	13	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862598	11	106140392	CT	C	420	PASS	-	-	-	-	-	Del	-	D	106140392	106140398	1	20	376.143	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	4	4	4	25	22	25	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862678	11	106419888	GA	G	420	PASS	-	-	-	-	-	Del	-	D	106419888	106419898	1	20	378.551	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	4	4	4	22	32	22	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862914	11	107187754	AT	A	449	PASS	-	-	-	-	-	Del	-	D	107187754	107187764	1	24	431.426	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	5	5	6	32	22	33	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862969	11	107363848	GA	G	300	PASS	-	-	-	-	-	Del	-	D	107363848	107363856	1	6	270.394	-	-	7	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	5	0	5	0	21	2	21	2	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759862976	11	107384645	TA	T	300	PASS	ALKBH8	CCDS8337.2	r.?	-	-	Del	intronic	D	107384645	107384654	1	12	270.394	-	-	8	1	1	ALKBH8|CCDS8337.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALKBH8|CCDS8337.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	4	4	24	22	24	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863020	11	107491594	CA	C	300	PASS	ELMOD1	CCDS44723.1	r.?	-	-	Del	intronic	D	107491594	107491603	1	6	266.781	-	-	8	1	1	ELMOD1|CCDS44723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELMOD1|CCDS44723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	0	5	1	8	12	30	12	30	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863050	11	107567577	CT	C	420	PASS	-	-	-	-	-	Del	-	D	107567577	107567586	1	8	377.949	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	0	7	1	9	25	31	25	31	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863281	11	108091141	GT	G	360	PASS	ATM	CCDS31669.1	r.?	-	-	Del	upstream	D	108091141	108091149	1	15	324.472	-	-	7	1	1	ATM|CCDS31669.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NPAT|CCDS41710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	16	5	16	0	0	./.	2	4	5	5	23	31	23	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863379	11	108425494	CA	C	420	PASS	EXPH5	CCDS8341.1	r.?	-	-	Del	intronic	D	108425494	108425502	1	20	371.929	-	-	7	1	1	EXPH5|CCDS8341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXPH5|CCDS8341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	4	5	4	26	22	26	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863433	11	108559235	A	AT	420	PASS	DDX10	CCDS8342.1	r.?	-	-	Ins	intronic	I	108559235	108559244	1	8	374.337	-	-	8	1	1	DDX10|CCDS8342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DDX10|CCDS8342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	0	7	1	8	29	26	29	26	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863476	11	108685378	CA	C	360	PASS	DDX10	CCDS8342.1	r.?	-	-	Del	intronic	D	108685378	108685388	1	15	324.472	-	-	9	1	1	DDX10|CCDS8342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DDX10|CCDS8342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	4	2	5	16	21	16	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863566	11	108895979	AT	A	360	PASS	-	-	-	-	-	Del	-	D	108895979	108895988	1	15	324.472	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	6	5	17	23	17	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863580	11	108923345	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	108923345	108923363	2	12	269.792	-	-	8	1	-	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	4	5	32	23	32	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863693	11	109330205	GT	G	300	PASS	-	-	-	-	-	Del	-	D	109330205	109330211	1	6	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	5	1	14	6	14	6	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863717	11	109487019	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	109487019	109487027	1	20	374.337	-	-	7	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	3	4	4	4	39	25	39	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863806	11	109820961	AG	A	300	PASS	-	-	-	-	-	Del	-	D	109820961	109820969	1	12	269.792	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	4	2	24	27	24	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759863819	11	109866106	GA	G	600	PASS	-	-	-	-	-	Del	-	D	109866106	109866116	1	35	539.583	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	6	5	11	17	28	17	28	5	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864093	11	110521437	AT	A	396	PASS	ARHGAP20	CCDS31673.1	r.?	-	-	Del	intronic	D	110521437	110521445	1	20	377.949	-	-	7	1	1	ARHGAP20|CCDS31673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP20|CCDS31673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	5	16	5	0	0	./.	3	4	5	4	24	24	24	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864127	11	110644595	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	110644595	110644603	1	42	587.039	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	15	12	0	0	./.	5	6	6	7	32	18	33	18	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864319	11	111437886	GA	G	300	PASS	-	-	-	-	-	Del	-	D	111437886	111437895	1	12	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	4	7	27	35	27	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864377	11	111588804	GA	G	360	PASS	SIK2	CCDS8347.1	r.?	-	-	Del	intronic	D	111588804	111588814	1	15	324.472	-	-	9	1	1	SIK2|CCDS8347.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIK2|CCDS8347.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	6	5	22	28	22	28	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864472	11	111918988	CTGTT	C	257	PASS	DLAT	CCDS8354.1	r.?	-	-	Del	intronic	D	111918988	111918996	4	12	270.394	-	-	1	1	1	DLAT|CCDS8354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLAT|CCDS8354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	2	3	2	4	24	21	24	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864562	11	112110285	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	112110285	112110294	1	6	266.781	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	11	9	0	0	./.	5	0	8	0	38	22	39	22	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864603	11	112205930	GGT	G	420	PASS	AP002841.2	ENST00000504610	r.?	-	-	Del	intronic	D	112205930	112205947	2	20	377.347	-	-	8	1	-	AP002841.2|ENST00000504610|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP002841.2|ENST00000504610|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	4	5	9	31	31	31	31	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864640	11	112316056	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	112316056	112316065	1	42	588.244	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	6	6	7	26	29	26	30	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864715	11	112614660	A	AAT	300	PASS	-	-	-	-	-	Ins	-	I	112614660	112614670	2	12	264.373	-	-	4	1	1	-	-	./.	0	0	0	0	16	17	16	18	0	0	./.	3	2	4	3	20	18	20	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759864729	11	112669195	CA	C	540	PASS	-	-	-	-	-	Del	-	D	112669195	112669205	1	30	484.903	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	5	5	6	28	29	28	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865025	11	113672812	C	CT	360	PASS	USP28	CCDS31680.1	r.?	-	-	Ins	intronic	I	113672812	113672815	1	15	320.86	-	-	2	1	1	USP28|CCDS31680.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USP28|CCDS31680.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	4	2	4	3	28	25	28	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865083	11	113842591	TC	T	420	PASS	HTR3A	CCDS8366.1	r.?	-	-	Del	upstream	D	113842591	113842597	1	20	377.347	-	-	5	1	1	HTR3A|CCDS8366.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HTR3A|CCDS8366.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	6	4	23	18	23	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865150	11	114039775	GC	G	360	PASS	ZBTB16	CCDS8367.1	r.?	-	-	Del	intronic	D	114039775	114039782	1	16	324.472	-	-	6	1	1	ZBTB16|CCDS8367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZBTB16|CCDS8367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	4	3	34	19	34	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865195	11	114183747	CA	C	480	PASS	NNMT	CCDS8368.1	r.?	-	-	Del	downstream	D	114183747	114183757	1	25	429.018	-	-	9	1	1	NNMT|CCDS8368.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NNMT|CCDS8368.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	8	10	8	0	0	./.	4	4	4	6	14	30	14	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865344	11	114613870	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	114613870	114613879	1	14	373.735	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	1	6	1	6	3	29	3	29	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865526	11	115161944	GA	G	300	PASS	CADM1	CCDS8373.1	r.?	-	-	Del	intronic	D	115161944	115161954	1	10	270.394	-	-	9	1	1	CADM1|CCDS8373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM1|CCDS8373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	4	1	8	1	32	14	32	14	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865705	11	115643869	CT	C	300	PASS	-	-	-	-	-	Del	-	D	115643869	115643878	1	12	266.179	-	-	8	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	3	3	8	28	25	28	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865712	11	115689736	GA	G	360	PASS	-	-	-	-	-	Del	-	D	115689736	115689746	1	15	324.472	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	6	4	26	31	26	31	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865830	11	116120112	GT	G	540	PASS	-	-	-	-	-	Del	-	D	116120112	116120120	1	24	485.505	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	7	2	8	4	28	27	28	27	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865909	11	116338564	TC	T	300	PASS	-	-	-	-	-	Del	-	D	116338564	116338570	1	12	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	4	4	28	26	28	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759865962	11	116514915	GAGA	G	269	PASS	-	-	-	-	-	Del	-	D	116514915	116514921	3	12	267.986	-	-	1	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	2	3	2	6	9	32	9	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866204	11	117210733	GT	G	360	PASS	CEP164	CCDS31683.1	r.?	-	-	Del	intronic	D	117210733	117210743	1	16	323.87	-	-	9	1	1	CEP164|CCDS31683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP164|CCDS31683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	6	3	26	28	26	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866237	11	117291447	A	AAAAC	360	PASS	-	-	-	-	-	Ins	-	I	117291447	117291467	4	15	309.421	-	-	4	1	1	-	-	./.	0	0	0	0	3	7	3	7	0	0	./.	2	4	3	4	22	31	24	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866344	11	117633153	GT	G	420	PASS	DSCAML1	CCDS8384.1	r.?	-	-	Del	intronic	D	117633153	117633163	1	20	378.551	-	-	9	1	1	DSCAML1|CCDS8384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSCAML1|CCDS8384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	3	4	4	4	18	23	18	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866362	11	117710117	AC	A	420	PASS	FXYD6	CCDS8387.1	r.?	-	-	Del	intronic	D	117710117	117710119	1	14	378.551	-	-	1	1	1	FXYD6|CCDS8387.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	FXYD6|CCDS8387.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	1	6	1	8	16	27	16	27	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866403	11	117840274	CA	C	660	PASS	-	-	-	-	-	Del	-	D	117840274	117840280	1	36	587.641	-	-	5	1	1	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	8	3	9	4	31	21	31	21	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866424	11	117924705	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	117924705	117924713	1	16	320.86	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	3	3	4	5	45	32	45	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866455	11	118038849	AG	A	600	PASS	SCN2B	CCDS8390.1	r.493delC	c.398delC	p.P133fs*28	Del	frameshift	D	118038849	118038856	1	35	540.787	-	-	6	1	1	SCN2B|CCDS8390.1|r.493delC|c.398delC|p.P133fs*28|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SCN2B|CCDS8390.1|r.493delC|c.398delC|p.P133fs*28|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	12	6	12	0	0	./.	4	6	5	7	27	30	27	30	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866542	11	118269077	CTT	C	480	PASS	UBE4A	CCDS8396.1	r.5274_5275delUU	c.?	p.?	Del	3'UTR variant	D	118269077	118269082	2	21	432.63	-	-	4	1	1	UBE4A|CCDS8396.1|r.5274_5275delUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	UBE4A|CCDS8396.1|r.5274_5275delUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	2	6	4	6	21	26	21	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866543	11	118270012	CT	C	300	PASS	UBE4A	CCDS8396.1	r.?	-	-	Del	downstream	D	118270012	118270022	1	10	269.792	-	-	9	1	1	UBE4A|CCDS8396.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ATP5L|CCDS8397.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	1	6	15	35	15	35	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866556	11	118299236	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	118299236	118299239	1	16	320.86	-	-	2	1	1	-	-	./.	0	0	0	0	8	13	9	14	0	0	./.	3	3	3	3	29	28	29	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866574	11	118380455	TA	T	360	PASS	MLL	CCDS31686.1	r.?	-	-	Del	intronic	D	118380455	118380465	1	16	323.87	-	-	9	1	1	MLL|CCDS31686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLL|CCDS31686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	4	4	25	31	25	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866594	11	118462213	TCTC	T	300	PASS	ARCN1	CCDS8400.1	r.?	-	-	Del	intronic	D	118462213	118462219	3	10	270.394	-	-	1	1	1	ARCN1|CCDS8400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARCN1|CCDS8400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	1	4	3	5	20	27	20	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866809	11	118844121	G	GT	300	PASS	FOXR1	CCDS31688.1	r.?	-	-	Ins	intronic	I	118844121	118844130	1	12	267.383	-	-	8	1	1	FOXR1|CCDS31688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FOXR1|CCDS31688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	5	23	29	23	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866863	11	118911395	G	GT	418	PASS	HYOU1	CCDS8408.1	r.?	-	-	Ins	downstream	I	118911395	118911404	1	24	427.211	-	-	8	1	1	HYOU1|CCDS8408.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HYOU1|CCDS8408.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	11	8	11	0	0	./.	3	5	4	6	29	31	29	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866910	11	119012202	GA	G	360	PASS	-	-	-	-	-	Del	-	D	119012202	119012211	1	12	324.472	-	-	8	1	1	-	-	./.	0	0	0	0	4	12	4	12	0	0	./.	5	1	7	2	31	23	31	23	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866982	11	119209120	AC	A	300	PASS	RNF26	CCDS8419.1	r.?	-	-	Del	downstream	D	119209120	119209128	1	10	270.394	-	-	7	1	1	RNF26|CCDS8419.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AP003396.1|ENST00000501918|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	5	1	16	19	16	19	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759866983	11	119213687	TG	T	360	PASS	MFRP	CCDS8421.1	r.1297delC	c.1150delC	p.H384fs*94	Del	frameshift	D	119213687	119213695	1	12	324.472	-	-	7	1	1	MFRP|CCDS8421.1|r.1297delC|c.1150delC|p.H384fs*94|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MFRP|CCDS8421.1|r.1297delC|c.1150delC|p.H384fs*94|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	7	9	7	0	0	./.	5	1	7	4	29	22	29	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867138	11	119568942	C	CA	360	PASS	PVRL1	CCDS8426.1	r.?	-	-	Ins	intronic	I	119568942	119568944	1	15	320.86	-	-	1	1	1	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	11	0	0	./.	4	2	4	2	28	21	28	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867149	11	119583290	CA	C	300	PASS	PVRL1	CCDS8426.1	r.?	-	-	Del	intronic	D	119583290	119583300	1	12	266.781	-	-	9	1	1	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	2	4	3	26	17	26	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867200	11	119745568	AC	A	360	PASS	-	-	-	-	-	Del	-	D	119745568	119745574	1	15	324.472	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	6	4	22	23	22	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867307	11	120190066	TA	T	300	PASS	POU2F3	CCDS8431.1	r.2379delA	c.?	p.?	Del	3'UTR variant	D	120190066	120190075	1	12	270.394	-	-	8	1	1	POU2F3|CCDS8431.1|r.2379delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	POU2F3|CCDS8431.1|r.2379delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	3	2	26	25	26	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867358	11	120361945	CT	C	360	PASS	ARHGEF12	CCDS41727.1	r.?	-	-	Del	downstream	D	120361945	120361955	1	7	324.472	-	-	9	1	1	ARHGEF12|CCDS41727.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ARHGEF12|CCDS41727.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	7	12	7	0	0	./.	6	0	10	1	27	17	27	17	10	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867442	11	120729170	GA	G	540	PASS	GRIK4	CCDS8433.1	r.?	-	-	Del	intronic	D	120729170	120729180	1	28	485.505	-	-	9	1	1	GRIK4|CCDS8433.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK4|CCDS8433.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	6	4	7	26	25	26	25	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867463	11	120806595	CA	C	300	PASS	GRIK4	CCDS8433.1	r.?	-	-	Del	intronic	D	120806595	120806604	1	10	270.394	-	-	8	1	1	GRIK4|CCDS8433.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK4|CCDS8433.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	4	1	6	3	27	6	27	6	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867493	11	120867141	CA	C	300	PASS	-	-	-	-	-	Del	-	D	120867141	120867148	1	12	270.394	-	-	6	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	2	4	13	30	13	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867531	11	121082038	GA	G	300	PASS	-	-	-	-	-	Del	-	D	121082038	121082044	1	6	270.394	-	-	5	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	0	5	0	6	15	29	15	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867592	11	121257677	TA	T	420	PASS	-	-	-	-	-	Del	-	D	121257677	121257684	1	20	377.949	-	-	6	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	4	6	7	20	31	20	31	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867672	11	121526682	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	121526682	121526690	1	12	265.577	-	-	7	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	5	2	27	22	28	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867727	11	121710967	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	121710967	121710975	1	20	374.337	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	6	4	40	25	40	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867805	11	121974794	TA	T	420	PASS	MIR125B1	ENST00000385236	r.?	-	-	Del	upstream	D	121974794	121974800	1	18	378.551	-	-	5	1	1	MIR125B1|ENST00000385236|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	MIR125B1|ENST00000385236|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	10	18	10	18	0	0	./.	5	2	5	4	22	26	22	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867828	11	122036079	A	AC	540	PASS	-	-	-	-	-	Ins	-	I	122036079	122036088	1	30	480.688	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	5	4	5	20	39	20	40	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867888	11	122211939	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	122211939	122211948	1	12	267.383	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	14	16	0	0	./.	2	3	3	6	27	37	27	38	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867894	11	122232033	GT	G	360	PASS	-	-	-	-	-	Del	-	D	122232033	122232042	1	12	324.472	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	1	5	2	6	28	21	28	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759867951	11	122489621	TG	T	660	PASS	-	-	-	-	-	Del	-	D	122489621	122489629	1	42	594.866	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	6	5	7	7	31	36	31	36	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868194	11	123043200	CT	C	420	PASS	ENSG00000166250	CCDS8441.1	r.?	-	-	Del	intronic	D	123043200	123043209	1	20	377.949	-	-	8	1	1	ENSG00000166250|CCDS8441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000166250|CCDS8441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	3	4	29	16	29	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868238	11	123164893	AT	A	300	PASS	-	-	-	-	-	Del	-	D	123164893	123164903	1	10	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	2	5	12	29	12	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868376	11	123565381	GT	G	420	PASS	-	-	-	-	-	Del	-	D	123565381	123565391	1	8	376.745	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	7	0	9	1	34	20	34	20	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868429	11	123732225	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	123732225	123732234	1	21	427.211	-	-	8	1	1	-	-	./.	0	0	0	0	13	24	13	24	0	0	./.	6	2	7	3	28	16	28	16	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868692	11	124341492	AT	A	300	PASS	-	-	-	-	-	Del	-	D	124341492	124341502	1	6	259.557	-	-	9	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	5	0	5	0	27	1	27	1	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868733	11	124556464	TA	T	360	PASS	SPA17	CCDS8450.1	r.?	-	-	Del	intronic	D	124556464	124556470	1	15	324.472	-	-	5	1	1	SPA17|CCDS8450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPA17|CCDS8450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	4	6	22	16	22	16	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868747	11	124627491	A	AG	300	PASS	ESAM	CCDS8453.1	r.?	-	-	Ins	intronic	I	124627491	124627498	1	12	267.383	-	-	6	1	1	ESAM|CCDS8453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESAM|CCDS8453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	10	10	0	0	./.	3	2	7	4	34	25	34	26	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759868965	11	125382875	CA	C	300	PASS	-	-	-	-	-	Del	-	D	125382875	125382884	1	12	270.394	-	-	8	1	-	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	5	5	22	25	22	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869062	11	125555547	GT	G	300	PASS	ACRV1	CCDS8460.1	r.?	-	-	Del	upstream	D	125555547	125555557	1	12	270.394	-	-	9	1	1	ACRV1|CCDS8460.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ACRV1|CCDS8460.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	4	5	25	28	25	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869183	11	125889950	GA	G	360	PASS	CDON	CCDS8468.1	r.?	-	-	Del	intronic	D	125889950	125889960	1	15	324.472	-	-	9	1	-	CDON|CCDS8468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDON|CCDS8468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	2	4	3	7	25	23	25	23	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869188	11	125905686	G	GA	300	PASS	CDON	CCDS8468.1	r.?	-	-	Ins	intronic	I	125905686	125905692	1	12	266.179	-	-	5	1	1	CDON|CCDS8468.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDON|CCDS8468.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869201	11	125937540	CAA	C	420	PASS	CDON	CCDS8468.1	r.?	-	-	Del	upstream	D	125937540	125937544	2	20	378.551	-	-	3	1	1	CDON|CCDS8468.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CDON|CCDS8468.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	15	7	15	0	0	./.	3	4	4	6	36	27	36	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869220	11	126022988	GC	G	420	PASS	-	-	-	-	-	Del	-	D	126022988	126022994	1	20	378.551	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	3	5	3	28	24	28	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869234	11	126053679	AT	A	300	PASS	-	-	-	-	-	Del	-	D	126053679	126053688	1	12	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	3	9	3	9	0	0	./.	3	2	4	2	25	19	25	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869272	11	126157541	CATA	C	478	PASS	TIRAP	CCDS8472.1	r.?	-	-	Del	intronic	D	126157541	126157547	3	30	484.3	-	-	1	1	1	TIRAP|CCDS8472.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TIRAP|CCDS8472.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	4	5	7	5	33	24	33	24	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869622	11	127269397	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	127269397	127269405	1	6	267.383	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	5	3	8	20	27	21	27	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869658	11	127351932	GT	G	480	PASS	-	-	-	-	-	Del	-	D	127351932	127351940	1	21	431.426	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	6	2	8	24	26	24	26	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869708	11	127486967	CT	C	480	PASS	-	-	-	-	-	Del	-	D	127486967	127486976	1	24	432.63	-	-	8	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	3	5	4	7	36	27	36	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869726	11	127597522	TA	T	480	PASS	-	-	-	-	-	Del	-	D	127597522	127597528	1	24	432.63	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	6	4	30	18	30	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759869791	11	127906034	CA	C	480	PASS	-	-	-	-	-	Del	-	D	127906034	127906042	1	25	432.63	-	-	7	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	4	4	5	4	24	33	24	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870039	11	128795861	TA	T	300	PASS	-	-	-	-	-	Del	-	D	128795861	128795869	1	10	258.353	-	-	7	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	1	4	5	4	28	26	28	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870084	11	128945793	CGAG	C	418	PASS	ARHGAP32	CCDS44769.1	r.?	-	-	Del	intronic	D	128945793	128945801	3	25	432.63	-	-	2	1	1	ARHGAP32|CCDS44769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP32|CCDS44769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	4	4	6	26	21	26	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870089	11	128980129	TA	T	360	PASS	ARHGAP32	CCDS44769.1	r.?	-	-	Del	intronic	D	128980129	128980138	1	16	324.472	-	-	8	1	1	ARHGAP32|CCDS44769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP32|CCDS44769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	3	5	25	20	25	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870205	11	129323880	CT	C	269	PASS	BARX2	CCDS8481.1	r.?	-	-	Del	downstream	D	129323880	129323890	1	12	270.394	-	-	9	1	1	BARX2|CCDS8481.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	BARX2|CCDS8481.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	5	2	23	22	23	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870259	11	129507295	GA	G	480	PASS	-	-	-	-	-	Del	-	D	129507295	129507302	1	25	432.63	-	-	6	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	4	4	4	6	24	30	24	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870316	11	129638931	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	129638931	129638939	1	12	267.383	-	-	7	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	3	4	38	20	38	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870347	11	129708707	CT	C	389	PASS	TMEM45B	CCDS8482.1	r.?	-	-	Del	intronic	D	129708707	129708711	1	18	378.551	-	-	3	1	1	TMEM45B|CCDS8482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMEM45B|CCDS8482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	2	7	2	25	10	25	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870489	11	130169873	T	TA	300	PASS	ZBTB44	CCDS44776.1	r.?	-	-	Ins	intronic	I	130169873	130169879	1	12	266.179	-	-	5	1	1	ZBTB44|CCDS44776.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZBTB44|CCDS44776.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	3	23	16	24	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870500	11	130187311	CA	C	300	PASS	ZBTB44	CCDS44776.1	r.?	-	-	Del	upstream	D	130187311	130187321	1	12	267.986	-	-	9	1	-	ZBTB44|CCDS44776.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZBTB44|CCDS44776.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	4	3	29	23	29	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870506	11	130212525	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	130212525	130212535	1	24	468.045	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	7	3	7	23	28	23	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870515	11	130251402	AG	A	420	PASS	-	-	-	-	-	Del	-	D	130251402	130251408	1	14	378.551	-	-	5	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	1	6	1	8	28	40	28	40	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870530	11	130289781	TG	T	300	PASS	ADAMTS8	CCDS41732.1	r.?	-	-	Del	intronic	D	130289781	130289790	1	10	270.394	-	-	8	1	1	ADAMTS8|CCDS41732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS8|CCDS41732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	4	1	4	1	23	19	23	19	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870540	11	130321184	GCA	G	420	PASS	ADAMTS15	CCDS8488.1	r.?	-	-	Del	intronic	D	130321184	130321191	2	20	378.551	-	-	3	1	1	ADAMTS15|CCDS8488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS15|CCDS8488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	4	3	5	4	21	25	21	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870613	11	130621893	TA	T	300	PASS	-	-	-	-	-	Del	-	D	130621893	130621902	1	6	269.792	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	0	8	0	24	12	24	12	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870638	11	130728939	CA	C	480	PASS	-	-	-	-	-	Del	-	D	130728939	130728948	1	24	432.63	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	5	7	6	14	29	14	29	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870928	11	131736682	TA	T	600	PASS	OPCML	CCDS41733.1	r.?	-	-	Del	intronic	D	131736682	131736691	1	36	540.185	-	-	8	1	1	OPCML|CCDS41733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPCML|CCDS41733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	5	5	5	7	29	31	29	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870936	11	131759427	TA	T	420	PASS	OPCML	CCDS41733.1	r.?	-	-	Del	intronic	D	131759427	131759437	1	20	378.551	-	-	9	1	1	OPCML|CCDS41733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPCML|CCDS41733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	3	8	16	35	16	35	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759870989	11	131929639	AC	A	480	PASS	OPCML	CCDS8491.1	r.?	-	-	Del	intronic	D	131929639	131929645	1	24	432.63	-	-	5	1	1	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	3	5	3	5	25	32	25	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871056	11	132180359	CT	C	269	PASS	OPCML	CCDS8491.1	r.?	-	-	Del	intronic	D	132180359	132180367	1	12	270.394	-	-	7	1	1	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	4	19	17	19	17	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871059	11	132198379	TG	T	300	PASS	OPCML	CCDS8491.1	r.?	-	-	Del	intronic	D	132198379	132198387	1	10	270.394	-	-	7	1	1	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	22	7	22	0	0	./.	1	4	2	4	22	34	22	34	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871071	11	132280274	TA	T	300	PASS	-	-	-	-	-	Del	-	D	132280274	132280284	1	10	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	6	2	27	24	27	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871169	11	132739812	C	CA	360	PASS	ENSG00000183715	CCDS8492.1	r.?	-	-	Ins	intronic	I	132739812	132739819	1	12	320.86	-	-	6	1	1	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	5	1	8	2	30	30	30	30	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871180	11	132765698	AC	A	300	PASS	ENSG00000183715	CCDS8492.1	r.?	-	-	Del	intronic	D	132765698	132765706	1	12	270.394	-	-	7	1	1	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	4	3	38	24	38	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871309	11	133296185	AT	A	420	PASS	ENSG00000183715	CCDS31722.1	r.?	-	-	Del	intronic	D	133296185	133296195	1	20	377.949	-	-	9	1	1	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	4	3	4	3	27	20	27	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871363	11	133568357	CA	C	269	PASS	-	-	-	-	-	Del	-	D	133568357	133568367	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	7	5	32	29	32	29	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871416	11	133815402	T	TG	540	PASS	IGSF9B	CCDS44779.1	r.?	-	-	Ins	intronic	I	133815402	133815409	1	30	479.484	-	-	6	1	1	IGSF9B|CCDS44779.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGSF9B|CCDS44779.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	5	4	5	5	33	20	33	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871457	11	133948968	CT	C	300	PASS	JAM3	CCDS8494.1	r.?	-	-	Del	intronic	D	133948968	133948978	1	10	270.394	-	-	9	1	1	JAM3|CCDS8494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JAM3|CCDS8494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	1	6	17	23	17	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871494	11	134074718	TCA	T	300	PASS	NCAPD3	CCDS31723.1	r.?	-	-	Del	intronic	D	134074718	134074737	2	6	270.394	-	-	9	1	-	NCAPD3|CCDS31723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCAPD3|CCDS31723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	0	7	1	26	17	26	17	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871634	11	134668213	CT	C	300	PASS	-	-	-	-	-	Del	-	D	134668213	134668223	1	12	270.394	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	3	3	36	24	36	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871702	11	134858931	TC	T	360	PASS	-	-	-	-	-	Del	-	D	134858931	134858933	1	15	322.064	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	4	3	6	28	27	28	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871767	12	196496	CA	C	360	PASS	IQSEC3	CCDS31725.1	r.?	-	-	Del	intronic	D	196496	196504	1	12	324.531	-	-	7	1	1	IQSEC3|CCDS31725.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IQSEC3|CCDS31725.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	5	5	21	33	21	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871933	12	597157	AG	A	291	PASS	B4GALNT3	CCDS8504.1	r.?	-	-	Del	intronic	D	597157	597163	1	12	270.443	-	-	5	1	1	B4GALNT3|CCDS8504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	B4GALNT3|CCDS8504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	2	3	3	4	16	18	16	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759871941	12	602956	T	TA	420	PASS	B4GALNT3	CCDS8504.1	r.?	-	-	Ins	intronic	I	602956	602965	1	20	374.405	-	-	8	1	1	B4GALNT3|CCDS8504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	B4GALNT3|CCDS8504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	16	5	16	0	0	./.	3	4	3	5	27	26	27	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872057	12	880168	CT	C	300	PASS	WNK1	CCDS8506.1	r.?	-	-	Del	intronic	D	880168	880178	1	12	268.034	-	-	9	1	1	WNK1|CCDS8506.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WNK1|CCDS8506.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	3	4	19	12	19	12	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872072	12	908172	T	TG	269	PASS	WNK1	CCDS8506.1	r.?	-	-	Ins	intronic	I	908172	908180	1	10	267.432	-	-	7	1	1	WNK1|CCDS8506.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WNK1|CCDS8506.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	18	9	20	0	0	./.	4	1	4	3	23	13	24	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872168	12	1082195	TG	T	300	PASS	-	-	-	-	-	Del	-	D	1082195	1082202	1	6	270.443	-	-	6	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	0	5	1	7	25	23	25	23	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872273	12	1276780	AT	A	360	PASS	ERC1	CCDS8508.1	r.?	-	-	Del	intronic	D	1276780	1276790	1	16	324.531	-	-	9	1	1	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	3	4	23	21	23	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872442	12	1660298	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	1660298	1660304	1	25	427.892	-	-	5	1	1	-	-	./.	0	0	0	0	14	16	15	16	0	0	./.	4	4	5	6	22	28	23	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872541	12	1859177	AT	A	449	PASS	ADIPOR2	CCDS8511.1	r.?	-	-	Del	intronic	D	1859177	1859187	1	24	426.688	-	-	9	1	1	ADIPOR2|CCDS8511.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ADIPOR2|CCDS8511.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	5	4	7	15	20	15	20	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872628	12	2231581	TG	T	300	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2231581	2231588	1	10	270.443	-	-	6	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	1	5	3	28	22	28	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872650	12	2328655	AT	A	420	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2328655	2328663	1	14	378.62	-	-	7	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	1	6	3	6	26	27	26	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872654	12	2370421	CA	C	420	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2370421	2370430	1	18	353.935	-	-	8	1	-	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	2	5	6	5	35	17	35	17	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872681	12	2530320	CA	C	360	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2530320	2530329	1	16	324.531	-	-	8	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	3	3	3	5	25	20	25	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872690	12	2550844	GA	G	420	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2550844	2550852	1	14	378.62	-	-	7	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	6	4	6	32	29	32	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872800	12	2953258	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	2953258	2953264	1	15	320.919	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	5	2	21	28	21	29	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759872973	12	3265554	CG	C	540	PASS	TSPAN9	CCDS8520.1	r.?	-	-	Del	intronic	D	3265554	3265561	1	24	475.358	-	-	6	1	1	TSPAN9|CCDS8520.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSPAN9|CCDS8520.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	7	2	7	27	30	27	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873067	12	3651093	G	GT	360	PASS	PRMT8	CCDS8521.2	r.?	-	-	Ins	intronic	I	3651093	3651101	1	16	320.919	-	-	7	1	1	PRMT8|CCDS8521.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRMT8|CCDS8521.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	3	4	4	26	30	26	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873087	12	3723462	GA	G	480	PASS	EFCAB4B	CCDS44803.1	r.?	-	-	Del	downstream	D	3723462	3723472	1	25	429.698	-	-	9	1	1	EFCAB4B|CCDS44803.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EFCAB4B|CCDS44803.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	10	11	10	0	0	./.	4	4	5	4	26	23	26	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873106	12	3787864	GA	G	540	PASS	EFCAB4B	CCDS44803.1	r.?	-	-	Del	intronic	D	3787864	3787874	1	28	486.195	-	-	9	1	1	EFCAB4B|CCDS44803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFCAB4B|CCDS44803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	9	3	9	0	0	./.	6	3	10	4	36	28	36	28	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873204	12	4005753	AT	A	420	PASS	-	-	-	-	-	Del	-	D	4005753	4005763	1	20	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	4	3	5	3	31	36	31	36	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873242	12	4136706	G	GGT	360	PASS	-	-	-	-	-	Ins	-	I	4136706	4136718	2	15	316.704	-	-	5	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	4	4	4	28	34	30	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873395	12	4486029	CT	C	389	PASS	FGF23	CCDS8526.1	r.?	-	-	Del	intronic	D	4486029	4486039	1	20	378.62	-	-	9	1	1	FGF23|CCDS8526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF23|CCDS8526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	4	5	4	38	27	38	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873610	12	5134555	AAGG	A	329	PASS	-	-	-	-	-	Del	-	D	5134555	5134566	3	15	324.531	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	5	2	30	22	30	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873662	12	5374066	TA	T	540	PASS	-	-	-	-	-	Del	-	D	5374066	5374072	1	30	486.195	-	-	5	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	5	5	5	27	23	27	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873785	12	5775725	GA	G	420	PASS	ANO2	CCDS44807.1	r.?	-	-	Del	intronic	D	5775725	5775735	1	20	378.62	-	-	9	1	1	ANO2|CCDS44807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO2|CCDS44807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	4	3	4	15	22	15	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759873975	12	6331420	T	TC	300	PASS	CD9	CCDS8540.1	r.?	-	-	Ins	intronic	I	6331420	6331428	1	6	267.432	-	-	7	1	1	CD9|CCDS8540.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CD9|CCDS8540.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	7	0	0	./.	5	0	5	1	25	25	25	25	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874002	12	6387511	CCTT	C	418	PASS	-	-	-	-	-	Del	-	D	6387511	6387519	3	21	430.3	-	-	2	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	6	2	7	22	39	22	39	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874100	12	6596411	A	AT	300	PASS	MRPL51	CCDS8547.1	r.?	-	-	Ins	downstream	I	6596411	6596414	1	12	266.83	-	-	2	1	1	MRPL51|CCDS8547.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MRPL51|CCDS8547.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	4	7	4	0	0	./.	2	3	2	8	10	23	10	23	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874113	12	6621150	CA	C	329	PASS	NCAPD2	CCDS8548.1	r.?	-	-	Del	intronic	D	6621150	6621159	1	15	322.725	-	-	8	1	1	NCAPD2|CCDS8548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCAPD2|CCDS8548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	4	2	5	3	23	18	23	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874131	12	6683186	CA	C	300	PASS	CHD4	CCDS8552.1	r.?	-	-	Del	intronic	D	6683186	6683196	1	6	270.443	-	-	9	1	1	CHD4|CCDS8552.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD4|CCDS8552.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	5	0	5	2	23	20	23	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874286	12	7006537	CA	C	360	PASS	LRRC23	ENST00000433346	r.?	-	-	Del	intronic	D	7006537	7006547	1	15	324.531	-	-	9	1	1	LRRC23|ENST00000433346|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRRC23|ENST00000433346|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	3	6	15	35	15	35	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874290	12	7011311	CT	C	420	PASS	LRRC23	CCDS8569.1	r.?	-	-	Del	upstream	D	7011311	7011319	1	20	364.772	-	-	7	1	1	LRRC23|CCDS8569.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LRRC23|ENST00000433346|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	4	3	4	3	26	24	26	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874346	12	7167062	C	CT	300	PASS	C1S	CCDS31735.1	r.?	-	-	Ins	intronic	I	7167062	7167071	1	12	267.432	-	-	8	1	1	C1S|CCDS31735.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C1S|CCDS31735.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	3	2	3	2	29	18	29	18	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874475	12	7648055	AT	A	480	PASS	CD163	CCDS8578.1	r.?	-	-	Del	intronic	D	7648055	7648065	1	21	432.708	-	-	9	1	1	CD163|CCDS8578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD163|CCDS8578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	6	2	7	3	25	28	25	28	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874627	12	7913115	C	CT	480	PASS	ENSG00000205857	CCDS44826.1	r.?	-	-	Ins	upstream	I	7913115	7913125	1	9	424.882	-	-	9	1	1	ENSG00000205857|CCDS44826.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000205857|CCDS44826.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	11	15	11	0	0	./.	8	0	8	1	35	28	36	30	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874644	12	7933392	TA	T	420	PASS	-	-	-	-	-	Del	-	D	7933392	7933401	1	20	378.62	-	-	8	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	4	3	5	4	29	26	29	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874747	12	8001453	CT	C	269	PASS	SLC2A14	CCDS8585.1	r.?	-	-	Del	intronic	D	8001453	8001463	1	12	269.239	-	-	9	1	1	SLC2A14|CCDS8585.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC2A14|CCDS8585.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	3	3	5	26	19	26	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874793	12	8063300	CA	C	300	PASS	-	-	-	-	-	Del	-	D	8063300	8063310	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	17	0	0	./.	3	2	3	3	24	28	24	31	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759874902	12	8246159	CA	C	420	PASS	NECAP1	CCDS8589.1	r.?	-	-	Del	intronic	D	8246159	8246168	1	18	378.62	-	-	8	1	1	NECAP1|CCDS8589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NECAP1|CCDS8589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	13	3	13	0	0	./.	2	5	2	5	5	23	5	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875032	12	8536131	CA	C	476	PASS	-	-	-	-	-	Del	-	D	8536131	8536139	1	49	649.062	-	-	7	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	6	6	6	7	31	27	31	27	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875061	12	8679516	GT	G	480	PASS	CLEC4D	CCDS8593.1	r.?	-	-	Del	downstream	D	8679516	8679525	1	24	432.708	-	-	8	1	1	CLEC4D|CCDS8593.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLEC4D|CCDS8593.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	11	8	11	0	0	./.	5	3	7	3	18	19	18	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875094	12	8768420	ATG	A	360	PASS	AICDA	CCDS41747.1	r.?	-	-	Del	upstream	D	8768420	8768431	2	12	323.929	-	-	5	1	1	AICDA|CCDS41747.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AICDA|CCDS41747.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	17	15	17	0	0	./.	1	5	2	5	19	32	19	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875104	12	8775060	AT	A	480	PASS	-	-	-	-	-	Del	-	D	8775060	8775066	1	24	432.708	-	-	5	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	3	7	4	25	14	25	14	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875226	12	9036081	CT	C	329	PASS	-	-	-	-	-	Del	-	D	9036081	9036091	1	7	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	0	6	1	5	15	23	15	24	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875606	12	10112914	CT	C	300	PASS	-	-	-	-	-	Del	-	D	10112914	10112919	1	12	270.443	-	-	4	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	2	3	3	6	12	32	12	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875982	12	11056290	GA	G	329	PASS	TAS2R13	CCDS8635.1	r.?	-	-	Del	downstream	D	11056290	11056300	1	15	324.531	-	-	9	1	1	TAS2R13|CCDS8635.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TAS2R13|CCDS8635.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	16	10	16	0	0	./.	2	4	3	4	14	14	14	14	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759875993	12	11100345	G	GT	329	PASS	TAS2R14	ENST00000381852	r.?	-	-	Ins	intronic	I	11100345	11100354	1	16	315.5	-	-	8	1	1	TAS2R14|ENST00000381852|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TAS2R14|ENST00000381852|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	21	11	22	0	0	./.	3	3	3	3	29	29	30	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759876215	12	11585781	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	11585781	11585798	2	12	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	4	4	24	31	24	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759876354	12	11967284	TA	T	360	PASS	ETV6	CCDS8643.1	r.?	-	-	Del	intronic	D	11967284	11967294	1	15	324.531	-	-	9	1	1	ETV6|CCDS8643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ETV6|CCDS8643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	8	3	28	27	28	27	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759876518	12	12282495	CT	C	420	PASS	LRP6	CCDS8647.1	r.?	-	-	Del	intronic	D	12282495	12282505	1	14	378.62	-	-	9	1	1	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	1	6	2	6	32	28	32	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759876748	12	12791370	CA	C	360	PASS	CREBL2	CCDS8651.1	r.?	-	-	Del	intronic	D	12791370	12791380	1	12	324.531	-	-	9	1	1	CREBL2|CCDS8651.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREBL2|CCDS8651.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	1	5	2	8	13	24	13	24	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759876887	12	13017137	GT	G	440	PASS	-	-	-	-	-	Del	-	D	13017137	13017145	1	25	432.106	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	4	6	6	27	26	27	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759876937	12	13122243	CA	C	402	PASS	-	-	-	-	-	Del	-	D	13122243	13122251	1	30	486.797	-	-	7	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	5	4	5	7	23	31	23	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877061	12	13590000	TC	T	420	PASS	-	-	-	-	-	Del	-	D	13590000	13590007	1	14	378.62	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	1	6	2	30	22	30	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877117	12	13820376	CA	C	360	PASS	GRIN2B	CCDS8662.1	r.?	-	-	Del	intronic	D	13820376	13820385	1	15	324.531	-	-	8	1	1	GRIN2B|CCDS8662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN2B|CCDS8662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	2	7	2	20	26	20	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877136	12	13882062	G	GT	540	PASS	GRIN2B	CCDS8662.1	r.?	-	-	Ins	intronic	I	13882062	13882070	1	28	481.378	-	-	7	1	1	GRIN2B|CCDS8662.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIN2B|CCDS8662.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	13	16	0	0	./.	3	6	3	8	29	34	29	35	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877248	12	14254327	AC	A	720	PASS	-	-	-	-	-	Del	-	D	14254327	14254333	1	45	645.45	-	-	5	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	8	7	7	33	30	33	30	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877444	12	14780705	GA	G	420	PASS	GUCY2C	CCDS8664.1	r.?	-	-	Del	intronic	D	14780705	14780715	1	20	373.803	-	-	9	1	1	GUCY2C|CCDS8664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GUCY2C|CCDS8664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	5	5	37	29	37	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877662	12	15421169	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	15421169	15421178	1	12	259.606	-	-	8	1	1	-	-	./.	0	0	0	0	17	10	18	10	0	0	./.	3	2	4	4	41	19	41	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877756	12	15807307	C	CA	420	PASS	EPS8	CCDS31753.1	r.?	-	-	Ins	intronic	I	15807307	15807313	1	14	374.405	-	-	5	1	1	EPS8|CCDS31753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPS8|CCDS31753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	6	1	8	2	36	28	36	29	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877845	12	16205453	CA	C	269	PASS	-	-	-	-	-	Del	-	D	16205453	16205463	1	12	269.841	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	6	6	29	15	29	15	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877873	12	16285500	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	16285500	16285510	2	20	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	4	5	4	25	24	25	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759877939	12	16443450	AT	A	840	PASS	-	-	-	-	-	Del	-	D	16443450	16443458	1	63	750.617	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	8	6	9	22	39	22	39	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878068	12	17081868	CA	C	300	PASS	-	-	-	-	-	Del	-	D	17081868	17081876	1	12	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	3	3	3	11	17	11	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878186	12	17613521	GA	G	300	PASS	-	-	-	-	-	Del	-	D	17613521	17613531	1	12	269.841	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	8	2	27	17	27	17	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878417	12	18430947	CT	C	420	PASS	PIK3C2G	CCDS44839.1	r.?	-	-	Del	intronic	D	18430947	18430954	1	18	378.018	-	-	6	1	1	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	2	5	3	6	24	29	24	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878460	12	18643942	AT	A	720	PASS	PIK3C2G	CCDS44839.1	r.?	-	-	Del	intronic	D	18643942	18643952	1	49	647.256	-	-	9	1	1	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	6	6	8	7	21	25	21	25	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878589	12	19176725	CT	C	420	PASS	-	-	-	-	-	Del	-	D	19176725	19176731	1	18	378.62	-	-	5	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	2	5	3	14	21	14	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878624	12	19247578	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	19247578	19247584	1	18	373.201	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	5	5	6	31	29	31	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878706	12	19452801	CA	C	300	PASS	PLEKHA5	CCDS44840.1	r.?	-	-	Del	intronic	D	19452801	19452810	1	10	265.626	-	-	8	1	1	PLEKHA5|CCDS44840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHA5|CCDS44840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	4	4	5	27	34	27	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878747	12	19524938	CT	C	269	PASS	PLEKHA5	CCDS44840.1	r.?	-	-	Del	intronic	D	19524938	19524948	1	10	270.443	-	-	9	1	1	PLEKHA5|CCDS44840.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	PLEKHA5|CCDS44840.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	1	4	2	6	23	32	23	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759878893	12	19786520	AT	A	300	PASS	-	-	-	-	-	Del	-	D	19786520	19786529	1	12	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	3	3	3	26	30	26	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759879132	12	20406504	CT	C	360	PASS	-	-	-	-	-	Del	-	D	20406504	20406514	1	16	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	4	3	31	25	31	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759879184	12	20591892	AT	A	600	PASS	PDE3A	CCDS31754.1	r.?	-	-	Del	intronic	D	20591892	20591901	1	35	534.865	-	-	8	1	1	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	6	4	8	33	25	33	25	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759879411	12	21188562	AT	A	420	PASS	ENSG00000205754	CCDS44843.1	r.?	-	-	Del	intronic	D	21188562	21188572	1	20	378.62	-	-	9	1	1	ENSG00000205754|CCDS44843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000205754|CCDS44843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	3	5	12	25	12	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759879429	12	21255991	GT	G	360	PASS	-	-	-	-	-	Del	-	D	21255991	21256000	1	15	324.531	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	2	5	14	21	14	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759879663	12	21943969	CT	C	660	PASS	-	-	-	-	-	Del	-	D	21943969	21943979	1	42	591.964	-	-	9	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	6	5	8	5	39	26	39	26	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880054	12	23212619	GA	G	480	PASS	-	-	-	-	-	Del	-	D	23212619	23212629	1	24	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	3	6	5	28	25	28	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880099	12	23345080	TA	T	480	PASS	-	-	-	-	-	Del	-	D	23345080	23345090	1	9	432.106	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	8	0	8	0	21	2	21	2	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880179	12	23651883	CT	C	480	PASS	-	-	-	-	-	Del	-	D	23651883	23651893	1	24	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	3	5	4	26	29	26	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880182	12	23655913	GT	G	300	PASS	-	-	-	-	-	Del	-	D	23655913	23655923	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	4	3	20	25	20	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880331	12	24148754	CA	C	360	PASS	-	-	-	-	-	Del	-	D	24148754	24148761	1	15	324.531	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	4	2	24	23	24	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880685	12	25192374	CT	C	360	PASS	-	-	-	-	-	Del	-	D	25192374	25192383	1	16	324.531	-	-	8	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	3	3	5	4	23	22	23	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880767	12	25397613	AT	A	300	PASS	KRAS	CCDS8703.1	r.?	-	-	Del	intronic	D	25397613	25397623	1	10	266.83	-	-	9	1	1	KRAS|CCDS8703.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KRAS|CCDS8703.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	4	1	5	1	26	26	26	26	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880789	12	25436163	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	25436163	25436166	1	12	267.432	-	-	2	1	1	-	-	./.	0	0	0	0	7	5	7	6	0	0	./.	2	3	3	3	13	21	14	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880800	12	25451246	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	25451246	25451253	1	12	267.432	-	-	6	1	-	-	-	./.	0	0	0	0	13	15	13	16	0	0	./.	2	3	7	3	26	19	26	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880820	12	25484257	A	AGG	420	PASS	-	-	-	-	-	Ins	-	I	25484257	25484259	2	20	370.191	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	10	0	0	./.	4	3	5	3	33	23	33	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759880847	12	25529819	GA	G	360	PASS	-	-	-	-	-	Del	-	D	25529819	25529825	1	15	324.531	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	2	6	5	18	19	18	19	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759881066	12	26170548	CA	C	600	PASS	RASSF8	CCDS8705.1	r.?	-	-	Del	intronic	D	26170548	26170554	1	36	539.079	-	-	5	1	1	RASSF8|CCDS8705.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RASSF8|CCDS8705.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	5	5	6	5	22	18	22	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759881107	12	26341966	GT	G	300	PASS	-	-	-	-	-	Del	-	D	26341966	26341975	1	12	270.443	-	-	8	1	-	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	4	3	10	14	10	14	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759881240	12	26745124	TA	T	360	PASS	ITPR2	CCDS41764.1	r.?	-	-	Del	intronic	D	26745124	26745132	1	15	324.531	-	-	7	1	1	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	4	2	4	14	32	14	32	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759881297	12	26959331	GA	G	360	PASS	ITPR2	CCDS41764.1	r.?	-	-	Del	intronic	D	26959331	26959341	1	15	324.531	-	-	9	1	1	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	4	5	25	26	25	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759881365	12	27153401	C	CT	420	PASS	TM7SF3	CCDS8710.1	r.?	-	-	Ins	intronic	I	27153401	27153411	1	18	374.405	-	-	9	1	1	TM7SF3|CCDS8710.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TM7SF3|CCDS8710.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	19	13	19	0	0	./.	5	2	6	2	29	14	30	14	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759881487	12	27491888	CT	C	420	PASS	ARNTL2	CCDS8712.1	r.?	-	-	Del	intronic	D	27491888	27491897	1	14	373.803	-	-	8	1	1	ARNTL2|CCDS8712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARNTL2|CCDS8712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	6	1	6	2	28	19	28	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882007	12	29202633	AC	A	360	PASS	-	-	-	-	-	Del	-	D	29202633	29202635	1	15	324.531	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	2	4	2	26	19	26	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882140	12	29472326	GT	G	360	PASS	FAR2	CCDS8717.1	r.?	-	-	Del	intronic	D	29472326	29472334	1	15	324.531	-	-	7	1	1	FAR2|CCDS8717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAR2|CCDS8717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	2	4	6	6	21	28	21	28	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882151	12	29504081	CA	C	540	PASS	ERGIC2	CCDS41765.1	r.?	-	-	Del	intronic	D	29504081	29504091	1	28	486.797	-	-	9	1	1	ERGIC2|CCDS41765.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERGIC2|CCDS41765.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	3	7	3	31	19	31	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882154	12	29508668	CA	C	300	PASS	ERGIC2	CCDS41765.1	r.?	-	-	Del	intronic	D	29508668	29508677	1	12	270.443	-	-	8	1	1	ERGIC2|CCDS41765.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERGIC2|CCDS41765.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	2	5	24	23	24	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882174	12	29555077	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	29555077	29555087	1	16	319.715	-	-	9	1	1	-	-	./.	0	0	0	0	15	19	16	20	0	0	./.	3	3	3	3	36	23	37	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882177	12	29568888	CA	C	480	PASS	-	-	-	-	-	Del	-	D	29568888	29568898	1	25	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	4	6	25	17	25	17	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882210	12	29670657	CT	C	540	PASS	TMTC1	CCDS8718.1	r.?	-	-	Del	intronic	D	29670657	29670667	1	30	486.797	-	-	9	1	1	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	4	5	4	5	25	33	25	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882213	12	29676647	AT	A	300	PASS	TMTC1	CCDS8718.1	r.?	-	-	Del	intronic	D	29676647	29676655	1	10	270.443	-	-	7	1	1	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	1	4	2	5	18	17	18	17	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882244	12	29787138	CT	C	300	PASS	TMTC1	CCDS8718.1	r.?	-	-	Del	intronic	D	29787138	29787148	1	12	270.443	-	-	9	1	1	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	2	3	2	22	28	22	28	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882265	12	29860163	GC	G	540	PASS	TMTC1	CCDS8718.1	r.?	-	-	Del	intronic	D	29860163	29860169	1	30	484.991	-	-	5	1	1	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC1|CCDS8718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	5	4	6	4	20	24	20	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882336	12	30185208	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	30185208	30185228	2	16	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	3	3	13	20	13	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882557	12	30844418	C	CA	300	PASS	IPO8	CCDS8719.1	r.?	-	-	Ins	intronic	I	30844418	30844426	1	12	267.432	-	-	7	1	1	IPO8|CCDS8719.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IPO8|CCDS8719.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	9	11	0	0	./.	2	3	5	3	29	18	29	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882631	12	30997084	TC	T	480	PASS	-	-	-	-	-	Del	-	D	30997084	30997090	1	21	430.902	-	-	5	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	6	3	7	27	28	27	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759882705	12	31207743	G	GCA	456	PASS	AC008013.1	ENST00000500527	r.?	-	-	Ins	intronic	I	31207743	31207756	2	16	423.075	-	-	6	1	-	AC008013.1|ENST00000500527|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC008013.1|ENST00000500527|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	7	1	7	1	37	37	37	37	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883038	12	31855990	TTC	T	300	PASS	AMN1	CCDS44858.1	r.?	-	-	Del	intronic	D	31855990	31856006	2	6	270.443	-	-	7	1	1	AMN1|CCDS44858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AMN1|CCDS44858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	5	0	6	0	29	8	29	8	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883270	12	32236347	CA	C	300	PASS	-	-	-	-	-	Del	-	D	32236347	32236355	1	6	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	5	0	6	1	29	16	29	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883510	12	32730685	CT	C	300	PASS	FGD4	CCDS8727.1	r.?	-	-	Del	intronic	D	32730685	32730695	1	6	270.443	-	-	9	1	1	FGD4|CCDS8727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGD4|CCDS8727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	5	0	5	2	27	25	27	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883516	12	32758329	AT	A	300	PASS	FGD4	CCDS8727.1	r.?	-	-	Del	intronic	D	32758329	32758335	1	10	270.443	-	-	5	1	1	FGD4|CCDS8727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGD4|CCDS8727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	2	4	32	23	32	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883762	12	33535599	CA	C	300	PASS	SYT10	CCDS8732.1	r.?	-	-	Del	intronic	D	33535599	33535608	1	10	270.443	-	-	8	1	1	SYT10|CCDS8732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT10|CCDS8732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	5	1	25	11	25	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883811	12	33698578	CT	C	600	PASS	-	-	-	-	-	Del	-	D	33698578	33698588	1	27	540.885	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	8	2	10	3	33	23	33	23	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883865	12	33953514	CT	C	360	PASS	-	-	-	-	-	Del	-	D	33953514	33953521	1	15	324.531	-	-	6	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	4	2	4	2	24	22	24	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883956	12	34391426	CA	C	300	PASS	-	-	-	-	-	Del	-	D	34391426	34391435	1	10	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	5	1	20	23	20	23	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883972	12	34466516	GT	G	840	PASS	-	-	-	-	-	Del	-	D	34466516	34466525	1	55	751.821	-	-	8	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	4	10	7	12	30	35	30	35	7	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883986	12	34582863	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	34582863	34582872	1	12	267.432	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	3	5	26	39	26	39	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883991	12	34593481	GT	G	420	PASS	-	-	-	-	-	Del	-	D	34593481	34593488	1	20	378.018	-	-	6	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	3	4	5	23	24	23	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759883995	12	34611550	TA	T	420	PASS	-	-	-	-	-	Del	-	D	34611550	34611560	1	20	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	4	3	31	24	31	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759884178	12	38210104	CT	C	509	PASS	-	-	-	-	-	Del	-	D	38210104	38210113	1	28	486.797	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	6	4	8	31	21	31	21	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759884194	12	38267926	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	38267926	38267934	1	25	427.892	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	15	0	0	./.	4	4	7	4	36	24	37	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759884275	12	38508312	AG	A	360	PASS	-	-	-	-	-	Del	-	D	38508312	38508318	1	12	324.531	-	-	5	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	1	8	1	31	19	31	19	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759884403	12	38780444	CA	C	300	PASS	-	-	-	-	-	Del	-	D	38780444	38780452	1	12	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	5	16	28	16	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759884538	12	39270023	CT	C	300	PASS	CPNE8	CCDS8733.1	r.?	-	-	Del	intronic	D	39270023	39270033	1	12	270.443	-	-	9	1	1	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	4	3	17	17	17	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759884960	12	40893180	CT	C	360	PASS	MUC19	ENST00000398702	r.?	-	-	Del	upstream	D	40893180	40893186	1	12	324.531	-	-	5	1	1	MUC19|ENST00000398702|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MUC19|ENST00000440207|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	1	6	3	30	16	30	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885076	12	41298222	CT	C	284	PASS	CNTN1	CCDS8737.1	r.?	-	-	Del	upstream	D	41298222	41298232	1	12	263.218	-	-	9	1	1	CNTN1|CCDS8737.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CNTN1|CCDS8737.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	5	3	17	17	17	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885276	12	42132469	CA	C	360	PASS	-	-	-	-	-	Del	-	D	42132469	42132479	1	16	323.929	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	4	4	34	17	34	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885376	12	42423803	GA	G	420	PASS	-	-	-	-	-	Del	-	D	42423803	42423813	1	20	376.211	-	-	9	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	4	3	5	3	20	19	20	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885417	12	42570609	C	CA	300	PASS	YAF2	CCDS31775.1	r.?	-	-	Ins	intronic	I	42570609	42570619	1	12	262.616	-	-	9	1	1	YAF2|CCDS31775.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	YAF2|CCDS31775.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	4	3	30	31	30	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885482	12	42781224	GA	G	300	PASS	PPHLN1	CCDS31777.1	r.?	-	-	Del	intronic	D	42781224	42781233	1	12	270.443	-	-	8	1	1	PPHLN1|CCDS31777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPHLN1|CCDS31777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	4	4	14	9	14	9	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885684	12	43192782	AC	A	598	PASS	-	-	-	-	-	Del	-	D	43192782	43192787	1	36	594.372	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	8	4	8	26	25	26	25	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885827	12	43803906	G	GT	329	PASS	ADAMTS20	ENST00000389420	r.?	-	-	Ins	intronic	I	43803906	43803915	1	12	320.919	-	-	8	1	1	ADAMTS20|ENST00000389420|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS20|ENST00000389420|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	17	13	0	0	./.	1	5	2	8	24	44	25	45	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885832	12	43843446	TA	T	420	PASS	ADAMTS20	ENST00000389420	r.?	-	-	Del	intronic	D	43843446	43843456	1	20	378.62	-	-	9	1	1	ADAMTS20|ENST00000389420|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS20|ENST00000389420|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	4	3	5	4	23	23	23	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885841	12	43875567	AT	A	480	PASS	ADAMTS20	ENST00000389420	r.?	-	-	Del	intronic	D	43875567	43875573	1	16	432.708	-	-	5	1	1	ADAMTS20|ENST00000389420|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS20|ENST00000389420|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	7	1	7	2	22	9	22	9	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885916	12	44043145	TA	T	480	PASS	-	-	-	-	-	Del	-	D	44043145	44043155	1	21	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	6	2	6	3	33	21	33	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885958	12	44177877	GA	G	660	PASS	IRAK4	CCDS8744.1	r.?	-	-	Del	intronic	D	44177877	44177886	1	42	593.168	-	-	8	1	1	IRAK4|CCDS8744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IRAK4|CCDS8744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	5	6	6	8	28	23	28	23	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759885962	12	44200933	G	GT	420	PASS	TWF1	CCDS31780.1	r.?	-	-	Ins	upstream	I	44200933	44200943	1	18	372.599	-	-	9	1	1	TWF1|CCDS31780.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TWF1|CCDS31780.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	15	6	15	6	0	0	./.	2	5	4	5	32	29	33	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886050	12	44422026	AT	A	540	PASS	TMEM117	CCDS8745.1	r.?	-	-	Del	intronic	D	44422026	44422036	1	30	486.797	-	-	9	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	5	4	8	4	23	28	23	28	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886081	12	44558949	CT	C	300	PASS	TMEM117	CCDS8745.1	r.?	-	-	Del	intronic	D	44558949	44558956	1	6	270.443	-	-	6	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	0	7	0	31	16	31	16	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886082	12	44559726	ATTC	A	420	PASS	TMEM117	CCDS8745.1	r.?	-	-	Del	intronic	D	44559726	44559734	3	20	378.62	-	-	2	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	6	4	21	24	21	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886124	12	44715813	AT	A	420	PASS	TMEM117	CCDS8745.1	r.?	-	-	Del	intronic	D	44715813	44715816	1	18	377.416	-	-	2	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	2	7	2	20	21	20	21	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886191	12	45133688	CA	C	420	PASS	NELL2	CCDS8746.1	r.?	-	-	Del	intronic	D	45133688	45133697	1	18	378.62	-	-	8	1	1	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	5	2	6	2	33	7	33	7	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886192	12	45134435	GA	G	420	PASS	NELL2	CCDS8746.1	r.?	-	-	Del	intronic	D	45134435	45134445	1	20	378.62	-	-	9	1	1	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	4	3	4	5	19	23	19	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886210	12	45176452	GA	G	300	PASS	NELL2	CCDS8746.1	r.?	-	-	Del	intronic	D	45176452	45176460	1	10	270.443	-	-	7	1	1	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	6	1	25	5	25	5	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886319	12	45580321	ACT	A	389	PASS	PLEKHA9	CCDS8747.1	r.?	-	-	Del	intronic	D	45580321	45580335	2	18	378.018	-	-	6	1	1	PLEKHA9|CCDS8747.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLEKHA9|CCDS8747.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	5	5	6	32	31	32	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886341	12	45681994	CT	C	300	PASS	ANO6	CCDS31782.1	r.?	-	-	Del	intronic	D	45681994	45682001	1	12	266.83	-	-	6	1	1	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	3	3	19	8	19	8	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886383	12	45962849	TA	T	360	PASS	-	-	-	-	-	Del	-	D	45962849	45962859	1	15	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	4	2	4	2	14	19	14	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886385	12	45966022	CACTT	C	538	PASS	-	-	-	-	-	Del	-	D	45966022	45966029	4	35	540.283	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	6	4	6	4	30	15	30	15	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886495	12	46357240	GA	G	360	PASS	SFRS2IP	CCDS8748.2	r.?	-	-	Del	intronic	D	46357240	46357250	1	12	316.102	-	-	9	1	1	SFRS2IP|CCDS8748.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS2IP|CCDS8748.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	1	5	1	5	21	23	21	23	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886499	12	46367262	TAAG	T	418	PASS	SFRS2IP	CCDS8748.2	r.?	-	-	Del	intronic	D	46367262	46367269	3	24	432.708	-	-	2	1	1	SFRS2IP|CCDS8748.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SFRS2IP|CCDS8748.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	3	13	3	0	0	./.	3	5	3	6	25	12	25	12	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886541	12	46574524	TAAAA	T	269	PASS	SLC38A1	CCDS41774.1	r.?	-	-	Del	downstream	D	46574524	46574534	4	12	270.443	-	-	9	1	1	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	4	6	10	26	10	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886545	12	46591289	C	CA	300	PASS	SLC38A1	CCDS41774.1	r.?	-	-	Ins	intronic	I	46591289	46591299	1	10	266.228	-	-	9	1	1	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	11	0	0	./.	1	4	2	5	33	21	33	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886555	12	46632346	TCTC	T	269	PASS	SLC38A1	CCDS41774.1	r.?	-	-	Del	intronic	D	46632346	46632352	3	12	270.443	-	-	1	1	1	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	3	3	16	27	16	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886594	12	46757461	GT	G	269	PASS	SLC38A2	CCDS8749.1	r.?	-	-	Del	intronic	D	46757461	46757471	1	10	270.443	-	-	9	1	-	SLC38A2|CCDS8749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC38A2|CCDS8749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	1	4	4	4	24	21	24	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886603	12	46791671	CA	C	542	PASS	-	-	-	-	-	Del	-	D	46791671	46791679	1	32	540.283	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	7	4	9	29	24	29	24	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886667	12	47061717	CT	C	540	PASS	-	-	-	-	-	Del	-	D	47061717	47061725	1	18	486.797	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	8	1	11	1	29	6	29	6	11	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886678	12	47089853	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	47089853	47089862	1	8	356.946	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	10	7	0	0	./.	0	7	0	7	1	29	1	29	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759886706	12	47198081	AT	A	300	PASS	SLC38A4	CCDS8750.1	r.?	-	-	Del	intronic	D	47198081	47198087	1	10	270.443	-	-	5	1	1	SLC38A4|CCDS8750.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC38A4|CCDS8750.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	4	1	25	35	25	35	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887066	12	48289499	A	AT	360	PASS	VDR	CCDS8757.1	r.?	-	-	Ins	intronic	I	48289499	48289508	1	16	319.113	-	-	8	1	1	VDR|CCDS8757.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	VDR|CCDS8757.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	18	0	0	./.	3	3	5	5	26	27	28	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887140	12	48557495	GA	G	360	PASS	-	-	-	-	-	Del	-	D	48557495	48557502	1	15	324.531	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	5	4	20	21	20	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887364	12	49153507	AG	A	480	PASS	-	-	-	-	-	Del	-	D	49153507	49153509	1	25	429.096	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	4	5	8	19	34	19	34	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887425	12	49305701	TA	T	300	PASS	CCDC65	CCDS8772.1	r.?	-	-	Del	intronic	D	49305701	49305710	1	12	270.443	-	-	8	1	1	CCDC65|CCDS8772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC65|CCDS8772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	3	2	5	4	23	26	23	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887464	12	49363739	C	CG	300	PASS	WNT10B	CCDS8775.1	r.?	-	-	Ins	intronic	I	49363739	49363748	1	6	264.422	-	-	8	1	1	WNT10B|CCDS8775.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WNT10B|CCDS8775.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	15	10	0	0	./.	5	0	6	1	38	12	39	12	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887472	12	49402004	AT	A	360	PASS	PRKAG1	CCDS44872.1	r.?	-	-	Del	intronic	D	49402004	49402014	1	16	324.531	-	-	9	1	1	PRKAG1|CCDS44872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRKAG1|CCDS44872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	3	3	3	4	21	26	21	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887503	12	49521111	AT	A	420	PASS	TUBA1B	CCDS31792.1	r.?	-	-	Del	downstream	D	49521111	49521121	1	20	378.62	-	-	9	1	1	TUBA1B|CCDS31792.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	TUBA1B|CCDS31792.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	6	10	6	10	0	0	./.	3	4	3	6	22	30	22	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887581	12	49741027	TC	T	540	PASS	DNAJC22	CCDS8785.1	r.329delC	c.?	p.?	Del	5'UTR variant	D	49741027	49741029	1	30	485.593	-	-	1	1	1	DNAJC22|CCDS8785.1|r.329delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	DNAJC22|CCDS8785.1|r.329delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	6	9	6	9	0	0	./.	5	4	7	6	35	26	35	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887704	12	50227115	CA	C	300	PASS	NCKAP5L	CCDS41781.2	r.?	-	-	Del	upstream	D	50227115	50227125	1	6	269.841	-	-	9	1	1	NCKAP5L|CCDS41781.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AC131157.4|ENST00000501091|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	0	5	0	5	3	26	3	26	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887710	12	50269414	AG	A	300	PASS	FAIM2	CCDS8791.1	r.?	-	-	Del	intronic	D	50269414	50269421	1	10	270.443	-	-	6	1	1	FAIM2|CCDS8791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAIM2|CCDS8791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	9	1	30	20	30	20	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887771	12	50393641	CT	C	300	PASS	RACGAP1P	CCDS8795.1	r.?	-	-	Del	intronic	D	50393641	50393651	1	10	270.443	-	-	9	1	1	RACGAP1P|CCDS8795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RACGAP1P|CCDS8795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	1	4	1	5	15	27	15	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887860	12	50667342	G	GA	360	PASS	LIMA1	CCDS44877.1	r.?	-	-	Ins	intronic	I	50667342	50667351	1	16	320.919	-	-	8	1	1	LIMA1|CCDS44877.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LIMA1|CCDS44877.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	3	3	21	22	21	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887862	12	50673675	GA	G	360	PASS	LIMA1	CCDS44877.1	r.?	-	-	Del	intronic	D	50673675	50673684	1	12	323.929	-	-	8	1	1	LIMA1|CCDS44877.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LIMA1|CCDS44877.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	1	5	2	6	5	26	5	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759887972	12	50865639	AT	A	480	PASS	LARP4	CCDS44879.1	r.?	-	-	Del	intronic	D	50865639	50865648	1	24	432.708	-	-	8	1	1	LARP4|CCDS44879.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARP4|CCDS44879.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	3	6	4	23	27	23	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888152	12	51257241	C	CA	540	PASS	TMPRSS12	CCDS44881.1	r.?	-	-	Ins	intronic	I	51257241	51257249	1	28	481.378	-	-	7	1	1	TMPRSS12|CCDS44881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMPRSS12|CCDS44881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	6	3	1	0	25	33	27	35	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888186	12	51344626	AT	A	329	PASS	HIGD1C	CCDS44882.1	r.?	-	-	Del	upstream	D	51344626	51344635	1	7	323.929	-	-	8	1	1	HIGD1C|CCDS44882.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HIGD1C|CCDS44882.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	11	8	11	0	0	./.	0	6	2	7	16	19	16	19	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888341	12	51647693	CA	C	780	PASS	SMAGP	CCDS44889.1	r.?	-	-	Del	intronic	D	51647693	51647703	1	54	692.916	-	-	9	1	1	SMAGP|CCDS44889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMAGP|CCDS44889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	5	8	7	9	29	32	29	32	7	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888470	12	51943787	AC	A	300	PASS	-	-	-	-	-	Del	-	D	51943787	51943793	1	6	269.841	-	-	5	1	1	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	0	5	0	5	0	23	0	23	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888484	12	51999730	G	GT	314	PASS	SCN8A	CCDS44891.1	r.?	-	-	Ins	intronic	I	51999730	51999739	1	12	320.317	-	-	8	1	1	SCN8A|CCDS44891.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SCN8A|CCDS44891.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	1	5	4	7	30	39	30	39	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888498	12	52050946	GT	G	360	PASS	SCN8A	CCDS44891.1	r.?	-	-	Del	intronic	D	52050946	52050954	1	15	324.531	-	-	7	1	1	SCN8A|CCDS44891.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SCN8A|CCDS44891.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	2	6	4	22	25	22	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888552	12	52252702	T	TC	300	PASS	AC068987.1	ENST00000513193	r.?	-	-	Ins	intronic	I	52252702	52252711	1	12	263.218	-	-	8	1	1	AC068987.1|ENST00000513193|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC068987.1|ENST00000513193|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	2	3	2	3	27	16	27	16	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888601	12	52468743	C	CA	360	PASS	C12orf44	CCDS8820.1	r.?	-	-	Ins	intronic	I	52468743	52468753	1	15	319.113	-	-	9	1	1	C12orf44|CCDS8820.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf44|CCDS8820.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	13	0	0	./.	4	2	8	6	27	35	27	35	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888742	12	52927230	TG	T	660	PASS	-	-	-	-	-	Del	-	D	52927230	52927240	1	40	588.953	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	7	9	12	22	28	22	28	9	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759888857	12	53301799	CCG	C	420	PASS	KRT8	CCDS8841.1	r.?	-	-	Del	upstream	D	53301799	53301803	2	20	378.62	-	-	1	1	1	KRT8|CCDS8841.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KRT8|CCDS8841.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	5	8	5	0	0	./.	3	4	4	4	23	35	23	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889052	12	53758750	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	53758750	53758756	1	12	265.626	-	-	5	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	3	2	19	25	19	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889100	12	53815574	TTTAG	T	535	PASS	AMHR2	CCDS8858.1	r.?	-	-	Del	upstream	D	53815574	53815584	4	35	540.283	-	-	2	1	1	AMHR2|CCDS8858.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AMHR2|CCDS8858.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	10	8	10	0	0	./.	6	4	6	5	23	24	23	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889108	12	53830472	G	GT	420	PASS	PRR13	CCDS44899.1	r.?	-	-	Ins	upstream	I	53830472	53830480	1	14	374.405	-	-	7	1	1	PRR13|CCDS44899.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PRR13|CCDS44899.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	9	11	9	0	0	./.	6	1	6	2	33	11	34	11	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889301	12	54265217	GA	G	300	PASS	-	-	-	-	-	Del	-	D	54265217	54265226	1	10	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	4	1	7	18	18	18	18	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889497	12	54826455	AC	A	420	PASS	-	-	-	-	-	Del	-	D	54826455	54826462	1	20	378.62	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	4	6	21	24	21	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889583	12	55090434	GA	G	420	PASS	-	-	-	-	-	Del	-	D	55090434	55090444	1	20	371.395	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	4	3	4	21	21	21	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759889896	12	56229236	AT	A	629	PASS	MMP19	CCDS8895.1	r.?	-	-	Del	downstream	D	56229236	56229244	1	42	589.555	-	-	7	1	1	MMP19|CCDS8895.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	MMP19|CCDS8895.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	10	5	10	5	0	0	./.	5	6	8	11	23	30	23	30	8	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890098	12	56714269	CA	C	300	PASS	PAN2	CCDS44922.1	r.?	-	-	Del	intronic	D	56714269	56714279	1	6	270.443	-	-	9	1	1	PAN2|CCDS44922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAN2|CCDS44922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	8	3	8	0	0	./.	0	5	0	7	15	34	15	34	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890229	12	57013034	CAGG	C	334	PASS	BAZ2A	CCDS44924.1	r.?	-	-	Del	intronic	D	57013034	57013040	3	18	378.62	-	-	1	1	1	BAZ2A|CCDS44924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAZ2A|CCDS44924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	2	5	4	6	16	24	16	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890258	12	57074335	A	AT	420	PASS	PTGES3	CCDS31836.1	r.?	-	-	Ins	intronic	I	57074335	57074344	1	20	374.405	-	-	8	1	1	PTGES3|CCDS31836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTGES3|CCDS31836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	3	6	7	27	32	28	32	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890445	12	57661045	TA	T	269	PASS	R3HDM2	CCDS8937.2	r.?	-	-	Del	intronic	D	57661045	57661055	1	10	270.443	-	-	9	1	1	R3HDM2|CCDS8937.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	R3HDM2|CCDS8937.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	1	5	32	29	32	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890575	12	57941474	GGT	G	360	PASS	KIF5A	CCDS8945.1	r.?	-	-	Del	upstream	D	57941474	57941488	2	15	324.531	-	-	6	1	1	KIF5A|CCDS8945.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KIF5A|CCDS8945.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	8	7	8	0	0	./.	2	4	2	4	16	37	16	37	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890652	12	58162065	TA	T	480	PASS	FAM119B	CCDS31848.1	r.?	-	-	Del	upstream	D	58162065	58162074	1	9	430.902	-	-	8	1	1	FAM119B|CCDS31848.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FAM119B|CCDS31848.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	11	8	11	0	0	./.	0	8	2	9	16	30	16	30	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890813	12	58606309	TA	T	360	PASS	-	-	-	-	-	Del	-	D	58606309	58606319	1	15	323.929	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	4	2	7	22	24	22	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759890853	12	58761784	GA	G	300	PASS	-	-	-	-	-	Del	-	D	58761784	58761794	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	3	2	3	5	27	21	27	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891048	12	59637916	CA	C	300	PASS	-	-	-	-	-	Del	-	D	59637916	59637925	1	12	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	4	3	27	25	27	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891122	12	59959624	CA	C	480	PASS	-	-	-	-	-	Del	-	D	59959624	59959634	1	24	432.106	-	-	9	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	5	4	6	25	23	25	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891250	12	60566741	GA	G	420	PASS	-	-	-	-	-	Del	-	D	60566741	60566749	1	18	378.62	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	2	9	5	36	28	36	28	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891633	12	61943585	CT	C	360	PASS	-	-	-	-	-	Del	-	D	61943585	61943594	1	7	324.531	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	0	6	0	6	16	25	16	25	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891666	12	62079616	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	62079616	62079624	1	10	267.432	-	-	7	1	1	-	-	./.	0	0	0	0	5	18	5	18	0	0	./.	1	4	2	5	34	30	34	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891834	12	62792786	CT	C	300	PASS	USP15	CCDS8963.1	r.?	-	-	Del	intronic	D	62792786	62792796	1	12	269.841	-	-	9	1	1	USP15|CCDS8963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP15|CCDS8963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	3	2	18	16	18	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891836	12	62810961	AG	A	420	PASS	-	-	-	-	-	Del	-	D	62810961	62810963	1	20	377.416	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	4	6	4	20	30	20	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891934	12	63096446	CG	C	420	PASS	PPM1H	CCDS44934.1	r.?	-	-	Del	intronic	D	63096446	63096453	1	20	378.62	-	-	6	1	1	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	4	4	8	17	20	17	20	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759891940	12	63122724	AT	A	360	PASS	PPM1H	CCDS44934.1	r.?	-	-	Del	intronic	D	63122724	63122734	1	15	324.531	-	-	9	1	1	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	2	4	2	4	27	24	27	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892069	12	63652991	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	63652991	63652997	1	12	267.432	-	-	5	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	4	23	20	23	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892360	12	64744194	TA	T	329	PASS	C12orf56	CCDS44935.1	r.?	-	-	Del	intronic	D	64744194	64744203	1	15	322.725	-	-	8	1	1	C12orf56|CCDS44935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf56|CCDS44935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	4	3	33	30	33	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892422	12	64901153	TG	T	480	PASS	-	-	-	-	-	Del	-	D	64901153	64901155	1	24	432.106	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	5	4	7	25	35	25	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892534	12	65089722	GT	G	300	PASS	RASSF3	CCDS8969.1	r.?	-	-	Del	downstream	D	65089722	65089728	1	12	270.443	-	-	5	1	1	RASSF3|CCDS8969.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RASSF3|CCDS8969.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	2	4	9	28	9	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892541	12	65107909	CA	C	360	PASS	GNS	CCDS8970.1	r.4440delU	c.?	p.?	Del	3'UTR variant	D	65107909	65107919	1	15	322.725	-	-	9	1	1	GNS|CCDS8970.1|r.4440delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GNS|CCDS8970.1|r.4440delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	19	10	19	0	0	./.	2	4	2	4	35	29	35	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892602	12	65373160	AT	A	344	PASS	-	-	-	-	-	Del	-	D	65373160	65373165	1	15	324.531	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	6	6	33	22	33	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892606	12	65398619	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	65398619	65398627	1	27	534.865	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	8	2	8	4	30	22	31	22	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892628	12	65457674	TC	T	480	PASS	WIF1	CCDS8971.1	r.?	-	-	Del	intronic	D	65457674	65457676	1	25	432.106	-	-	1	1	1	WIF1|CCDS8971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WIF1|CCDS8971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	4	4	5	25	33	25	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892703	12	65729390	T	TTG	300	PASS	MSRB3	CCDS31853.1	r.?	-	-	Ins	intronic	I	65729390	65729405	2	12	262.616	-	-	7	1	1	MSRB3|CCDS31853.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSRB3|CCDS31853.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	3	2	23	39	23	39	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892775	12	66035993	GA	G	360	PASS	-	-	-	-	-	Del	-	D	66035993	66036003	1	15	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	2	5	3	29	33	29	33	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892835	12	66258027	TA	T	360	PASS	HMGA2	CCDS44936.1	r.?	-	-	Del	intronic	D	66258027	66258036	1	12	324.531	-	-	8	1	1	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	1	5	1	8	19	29	19	29	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759892848	12	66337163	GC	G	360	PASS	HMGA2	CCDS44936.1	r.?	-	-	Del	intronic	D	66337163	66337170	1	15	324.531	-	-	6	1	1	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	4	2	5	2	32	9	32	9	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893037	12	66967788	CT	C	360	PASS	GRIP1	CCDS41807.1	r.?	-	-	Del	intronic	D	66967788	66967796	1	12	324.531	-	-	7	1	1	GRIP1|CCDS41807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIP1|CCDS41807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	5	1	5	4	25	41	25	41	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893303	12	67939434	CT	C	300	PASS	-	-	-	-	-	Del	-	D	67939434	67939444	1	10	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	1	4	1	30	26	30	26	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893315	12	67992784	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	67992784	67992792	1	10	267.432	-	-	7	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	1	4	2	5	31	13	31	13	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893414	12	68375900	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	68375900	68375909	1	20	374.405	-	-	8	1	-	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	4	3	6	5	35	22	36	22	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893451	12	68539543	CT	C	420	PASS	-	-	-	-	-	Del	-	D	68539543	68539553	1	14	378.018	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	1	6	3	6	26	22	26	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893564	12	68875346	CA	C	660	PASS	-	-	-	-	-	Del	-	D	68875346	68875353	1	40	594.974	-	-	6	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	7	4	9	4	28	28	28	28	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893659	12	69159118	CT	C	329	PASS	SLC35E3	CCDS41808.1	r.1613delU	c.?	p.?	Del	3'UTR variant	D	69159118	69159127	1	7	324.531	-	-	8	1	1	SLC35E3|CCDS41808.1|r.1613delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SLC35E3|CCDS41808.1|r.1613delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	16	9	16	0	0	./.	0	6	0	7	2	24	2	24	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893691	12	69220969	TA	T	420	PASS	MDM2	CCDS8986.2	r.?	-	-	Del	intronic	D	69220969	69220977	1	20	378.62	-	-	7	1	1	MDM2|CCDS8986.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDM2|CCDS8986.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	4	6	21	27	21	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893705	12	69247179	GT	G	300	PASS	CPM	CCDS8987.1	r.4416delA	c.?	p.?	Del	3'UTR variant	D	69247179	69247188	1	12	269.841	-	-	8	1	1	CPM|CCDS8987.1|r.4416delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CPM|CCDS8987.1|r.4416delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	16	10	16	0	0	./.	3	2	3	2	22	11	22	11	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893712	12	69267594	CT	C	360	PASS	CPM	CCDS8987.1	r.?	-	-	Del	intronic	D	69267594	69267604	1	15	321.521	-	-	9	1	1	CPM|CCDS8987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPM|CCDS8987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	2	5	2	22	20	22	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759893788	12	69528513	GA	G	360	PASS	-	-	-	-	-	Del	-	D	69528513	69528523	1	15	322.123	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	4	2	9	25	38	25	38	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894241	12	70714975	TTAGA	T	480	PASS	CNOT2	CCDS31857.1	r.?	-	-	Del	intronic	D	70714975	70714984	4	16	432.708	-	-	2	1	1	CNOT2|CCDS31857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNOT2|CCDS31857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	1	9	1	28	8	28	8	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894247	12	70734837	AT	A	360	PASS	CNOT2	CCDS31857.1	r.?	-	-	Del	intronic	D	70734837	70734843	1	16	324.531	-	-	5	1	1	CNOT2|CCDS31857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNOT2|CCDS31857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	3	4	5	20	23	20	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894334	12	70999696	GA	G	360	PASS	PTPRB	CCDS44943.1	r.?	-	-	Del	intronic	D	70999696	70999706	1	16	324.531	-	-	9	1	1	PTPRB|CCDS44943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRB|CCDS44943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	6	3	32	26	32	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894428	12	71452924	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	71452924	71452932	1	16	319.715	-	-	7	1	-	-	-	./.	0	0	0	0	19	18	19	19	0	0	./.	3	3	5	3	33	25	33	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894449	12	71564725	GA	G	420	PASS	TSPAN8	CCDS8999.1	r.?	-	-	Del	intronic	D	71564725	71564733	1	18	378.62	-	-	7	1	1	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	2	5	3	6	20	27	20	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894461	12	71605602	CT	C	540	PASS	TSPAN8	CCDS8999.1	r.?	-	-	Del	intronic	D	71605602	71605611	1	28	484.388	-	-	8	1	1	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	6	3	7	14	28	14	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894492	12	71754348	CA	C	300	PASS	TSPAN8	CCDS8999.1	r.?	-	-	Del	intronic	D	71754348	71754358	1	12	269.841	-	-	9	1	1	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSPAN8|CCDS8999.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	3	4	10	32	10	32	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894560	12	72000126	TA	T	360	PASS	ZFC3H1	CCDS41813.1	r.?	-	-	Del	downstream	D	72000126	72000135	1	15	324.531	-	-	8	1	1	ZFC3H1|CCDS41813.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZFC3H1|CCDS41813.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	4	4	27	16	27	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894606	12	72097456	TA	T	480	PASS	TMEM19	CCDS9002.1	r.4276delA	c.?	p.?	Del	3'UTR variant	D	72097456	72097465	1	21	432.708	-	-	8	1	1	TMEM19|CCDS9002.1|r.4276delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TMEM19|CCDS9002.1|r.4276delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	13	8	13	0	0	./.	6	2	9	2	28	34	28	34	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894661	12	72296866	AT	A	300	PASS	TBC1D15	CCDS31858.1	r.?	-	-	Del	intronic	D	72296866	72296876	1	12	270.443	-	-	9	1	1	TBC1D15|CCDS31858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D15|CCDS31858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	6	3	31	22	31	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894712	12	72532151	CA	C	480	PASS	-	-	-	-	-	Del	-	D	72532151	72532161	1	21	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	6	2	10	4	38	21	38	21	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894740	12	72683162	TA	T	300	PASS	TRHDE	CCDS9004.1	r.?	-	-	Del	intronic	D	72683162	72683172	1	10	270.443	-	-	9	1	1	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	5	1	23	14	23	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894773	12	72816868	AT	A	360	PASS	TRHDE	CCDS9004.1	r.?	-	-	Del	intronic	D	72816868	72816874	1	15	324.531	-	-	5	1	1	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	4	2	4	2	16	11	16	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894796	12	72932140	G	GT	360	PASS	TRHDE	CCDS9004.1	r.?	-	-	Ins	intronic	I	72932140	72932147	1	12	320.919	-	-	6	1	1	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	11	19	0	0	./.	5	1	5	1	33	31	34	33	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894831	12	73074870	GT	G	300	PASS	-	-	-	-	-	Del	-	D	73074870	73074877	1	6	270.443	-	-	6	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	0	5	2	6	6	16	6	16	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894853	12	73199885	CT	C	420	PASS	-	-	-	-	-	Del	-	D	73199885	73199894	1	20	378.018	-	-	8	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	3	4	4	5	27	27	27	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894897	12	73425789	AG	A	360	PASS	-	-	-	-	-	Del	-	D	73425789	73425797	1	16	320.919	-	-	7	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	4	3	21	19	21	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894898	12	73425911	TA	T	540	PASS	-	-	-	-	-	Del	-	D	73425911	73425917	1	30	486.797	-	-	5	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	5	6	5	23	31	23	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894923	12	73526713	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	73526713	73526718	2	10	270.443	-	-	4	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	2	5	7	16	7	16	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759894949	12	73628067	TA	T	300	PASS	-	-	-	-	-	Del	-	D	73628067	73628077	1	10	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	4	1	27	19	27	19	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895022	12	73893303	CT	C	329	PASS	-	-	-	-	-	Del	-	D	73893303	73893310	1	12	324.531	-	-	6	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	1	5	2	6	23	22	23	22	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895095	12	74150329	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	74150329	74150336	1	15	319.715	-	-	6	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	2	4	5	4	30	25	30	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895122	12	74275564	GT	G	540	PASS	-	-	-	-	-	Del	-	D	74275564	74275574	1	28	484.991	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	6	4	6	19	29	19	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895141	12	74365566	TA	T	325	PASS	-	-	-	-	-	Del	-	D	74365566	74365575	1	14	378.62	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	6	1	10	2	30	23	30	23	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895306	12	75088115	AT	A	360	PASS	-	-	-	-	-	Del	-	D	75088115	75088123	1	12	324.531	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	1	5	1	7	5	29	5	29	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895330	12	75278514	GA	G	480	PASS	-	-	-	-	-	Del	-	D	75278514	75278524	1	21	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	2	6	2	6	11	20	11	20	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895363	12	75416219	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	75416219	75416228	1	25	427.892	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	4	4	4	25	25	26	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895487	12	76021136	GA	G	300	PASS	-	-	-	-	-	Del	-	D	76021136	76021145	1	6	267.432	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	0	5	1	7	2	24	2	24	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895546	12	76295474	GA	G	360	PASS	-	-	-	-	-	Del	-	D	76295474	76295483	1	7	324.531	-	-	8	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	6	0	6	0	27	9	27	9	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895558	12	76354644	TG	T	360	PASS	ENSG00000198923	ENST00000361500	r.?	-	-	Del	upstream	D	76354644	76354646	1	15	320.317	-	-	1	1	-	ENSG00000198923|ENST00000361500|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000198923|ENST00000361500|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	7	13	7	0	0	./.	4	2	7	4	23	22	23	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895788	12	77037815	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	77037815	77037824	1	8	368.385	-	-	8	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	0	7	0	8	5	42	5	42	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895839	12	77171727	GAA	G	300	PASS	ZDHHC17	CCDS44946.1	r.?	-	-	Del	intronic	D	77171727	77171733	2	12	269.841	-	-	5	1	1	ZDHHC17|CCDS44946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZDHHC17|CCDS44946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	2	3	22	26	22	26	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895846	12	77193368	TAG	T	420	PASS	ZDHHC17	CCDS44946.1	r.?	-	-	Del	intronic	D	77193368	77193373	2	20	378.018	-	-	2	1	1	ZDHHC17|CCDS44946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZDHHC17|CCDS44946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	4	3	5	3	21	15	21	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895966	12	77607213	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	77607213	77607221	1	16	314.898	-	-	7	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	3	3	5	3	22	13	22	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759895988	12	77712782	ACT	A	420	PASS	-	-	-	-	-	Del	-	D	77712782	77712787	2	14	378.62	-	-	2	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	1	6	3	7	24	36	24	36	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896333	12	78861770	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	78861770	78861779	1	6	267.432	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	0	5	1	7	19	32	19	33	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896340	12	78883417	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	78883417	78883427	1	12	267.432	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	4	3	29	25	29	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896388	12	79061771	GT	G	360	PASS	-	-	-	-	-	Del	-	D	79061771	79061776	1	15	324.531	-	-	4	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	5	2	26	17	26	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896569	12	79944385	TC	T	540	PASS	-	-	-	-	-	Del	-	D	79944385	79944392	1	30	486.797	-	-	6	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	5	5	6	20	32	20	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896659	12	80252959	CA	C	360	PASS	PPP1R12A	CCDS44947.1	r.?	-	-	Del	intronic	D	80252959	80252968	1	15	323.327	-	-	8	1	1	PPP1R12A|CCDS44947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R12A|CCDS44947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	8	24	8	0	0	./.	4	2	4	2	14	24	14	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896703	12	80394505	AT	A	360	PASS	-	-	-	-	-	Del	-	D	80394505	80394515	1	15	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	2	4	3	33	24	33	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896720	12	80494632	CT	C	420	PASS	-	-	-	-	-	Del	-	D	80494632	80494642	1	18	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	2	6	2	17	12	17	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896997	12	81669905	CA	C	269	PASS	PPFIA2	ENST00000443686	r.?	-	-	Del	intronic	D	81669905	81669914	1	12	269.239	-	-	8	1	1	PPFIA2|ENST00000443686|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPFIA2|ENST00000443686|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	2	3	20	10	20	10	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759896999	12	81682366	GAGAT	G	298	PASS	PPFIA2	ENST00000443686	r.?	-	-	Del	intronic	D	81682366	81682372	4	12	324.531	-	-	1	1	1	PPFIA2|ENST00000443686|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPFIA2|ENST00000443686|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	1	5	2	5	16	27	16	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897294	12	82897983	CT	C	300	PASS	-	-	-	-	-	Del	-	D	82897983	82897992	1	6	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	0	5	1	7	19	28	19	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897442	12	83445602	CA	C	329	PASS	TMTC2	CCDS9025.1	r.?	-	-	Del	intronic	D	83445602	83445610	1	15	324.531	-	-	7	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	3	16	3	0	0	./.	2	4	4	4	20	20	20	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897468	12	83623546	TA	T	417	PASS	-	-	-	-	-	Del	-	D	83623546	83623556	1	20	376.814	-	-	9	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	3	4	5	4	31	17	31	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897503	12	83859419	TA	T	300	PASS	-	-	-	-	-	Del	-	D	83859419	83859429	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	2	6	27	24	27	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897566	12	84124672	GT	G	420	PASS	-	-	-	-	-	Del	-	D	84124672	84124681	1	20	378.018	-	-	8	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	3	5	5	29	37	29	37	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897644	12	84423612	TA	T	420	PASS	-	-	-	-	-	Del	-	D	84423612	84423622	1	20	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	4	5	15	23	15	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759897739	12	84728952	TA	T	660	PASS	-	-	-	-	-	Del	-	D	84728952	84728961	1	42	591.964	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	6	5	6	5	26	25	26	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898071	12	86201406	TC	T	360	PASS	RASSF9	CCDS44950.1	r.?	-	-	Del	intronic	D	86201406	86201413	1	15	324.531	-	-	6	1	1	RASSF9|CCDS44950.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASSF9|CCDS44950.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	4	2	5	26	32	26	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898106	12	86306371	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	86306371	86306377	1	15	320.919	-	-	5	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	5	2	21	7	21	7	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898133	12	86368962	GTGTC	G	300	PASS	MGAT4C	CCDS9030.1	r.?	-	-	Del	downstream	D	86368962	86368970	4	12	270.443	-	-	1	1	1	MGAT4C|CCDS9030.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MGAT4C|CCDS9030.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	2	17	23	17	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898298	12	87151219	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	87151219	87151227	1	7	320.919	-	-	7	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	0	6	0	17	6	18	6	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898527	12	88126918	AT	A	360	PASS	-	-	-	-	-	Del	-	D	88126918	88126927	1	12	324.531	-	-	8	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	5	1	6	2	31	11	31	11	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898636	12	88504485	C	CA	360	PASS	CEP290	ENST00000309041	r.?	-	-	Ins	intronic	I	88504485	88504495	1	16	319.715	-	-	9	1	1	CEP290|ENST00000309041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP290|ENST00000309041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	12	13	0	0	./.	3	3	5	3	19	31	19	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898699	12	88792330	TA	T	300	PASS	-	-	-	-	-	Del	-	D	88792330	88792337	1	12	270.443	-	-	6	1	1	-	-	./.	0	0	0	0	5	18	5	18	0	0	./.	2	3	3	4	29	23	29	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898717	12	88901801	T	TA	329	PASS	KITLG	CCDS31868.1	r.?	-	-	Ins	intronic	I	88901801	88901807	1	12	317.306	-	-	5	1	1	KITLG|CCDS31868.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KITLG|CCDS31868.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	9	10	0	0	./.	1	5	2	8	10	33	10	33	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898718	12	88907110	CA	C	300	PASS	KITLG	CCDS31868.1	r.?	-	-	Del	intronic	D	88907110	88907120	1	12	270.443	-	-	9	1	1	KITLG|CCDS31868.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KITLG|CCDS31868.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	2	3	3	3	15	9	15	9	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898781	12	89280763	TA	T	300	PASS	-	-	-	-	-	Del	-	D	89280763	89280773	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	4	4	30	29	30	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898908	12	89860948	CT	C	360	PASS	WDR51B	CCDS31869.1	r.?	-	-	Del	intronic	D	89860948	89860958	1	15	322.725	-	-	9	1	1	WDR51B|CCDS31869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR51B|CCDS31869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	5	3	24	13	24	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898930	12	89915830	TAC	T	360	PASS	WDR51B	CCDS31869.1	r.?	-	-	Del	intronic	D	89915830	89915840	2	7	324.531	-	-	4	1	1	WDR51B|CCDS31869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR51B|CCDS31869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	0	6	0	7	9	27	9	27	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759898999	12	90154996	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	90154996	90155003	1	16	320.919	-	-	6	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	3	5	4	9	12	9	12	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899032	12	90302806	TA	T	600	PASS	-	-	-	-	-	Del	-	D	90302806	90302815	1	20	540.885	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	9	1	10	1	24	18	24	18	10	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899151	12	90834466	T	TA	389	PASS	-	-	-	-	-	Ins	-	I	90834466	90834472	1	20	374.405	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	5	6	33	28	33	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899219	12	91144094	GT	G	300	PASS	-	-	-	-	-	Del	-	D	91144094	91144102	1	12	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	3	3	35	18	35	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899376	12	91724886	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	91724886	91724896	1	30	479.572	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	4	6	4	26	18	26	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899394	12	91827538	CA	C	360	PASS	-	-	-	-	-	Del	-	D	91827538	91827548	1	16	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	3	4	14	23	14	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899405	12	91840346	GA	G	360	PASS	-	-	-	-	-	Del	-	D	91840346	91840356	1	15	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	2	4	4	5	19	25	19	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899569	12	92405533	CT	C	269	PASS	-	-	-	-	-	Del	-	D	92405533	92405539	1	10	259.004	-	-	5	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	4	1	5	3	32	24	32	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899599	12	92502518	TCTC	T	269	PASS	-	-	-	-	-	Del	-	D	92502518	92502525	3	12	270.443	-	-	2	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	5	24	36	24	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899735	12	92892492	GT	G	480	PASS	-	-	-	-	-	Del	-	D	92892492	92892500	1	21	432.708	-	-	7	1	1	-	-	./.	0	0	0	0	23	9	23	9	0	0	./.	2	6	3	7	22	28	22	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759899856	12	93274089	GT	G	360	PASS	EEA1	CCDS31874.1	r.?	-	-	Del	intronic	D	93274089	93274099	1	15	324.531	-	-	9	1	1	EEA1|CCDS31874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEA1|CCDS31874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	4	2	6	3	27	28	27	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900073	12	93827909	TA	T	540	PASS	UBE2N	CCDS31875.1	r.?	-	-	Del	intronic	D	93827909	93827919	1	30	486.797	-	-	9	1	1	UBE2N|CCDS31875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2N|CCDS31875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	4	5	6	5	25	24	25	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900103	12	93890282	TA	T	300	PASS	MRPL42	CCDS9046.1	r.?	-	-	Del	intronic	D	93890282	93890289	1	12	268.034	-	-	6	1	1	MRPL42|CCDS9046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPL42|CCDS9046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	2	15	9	15	9	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900136	12	93975442	CT	C	300	PASS	-	-	-	-	-	Del	-	D	93975442	93975452	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	4	36	20	36	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900142	12	93995603	CT	C	300	PASS	-	-	-	-	-	Del	-	D	93995603	93995612	1	12	269.841	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	2	4	7	31	7	31	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900167	12	94082881	T	TA	300	PASS	CRADD	CCDS9048.1	r.?	-	-	Ins	intronic	I	94082881	94082890	1	12	267.432	-	-	8	1	1	CRADD|CCDS9048.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CRADD|CCDS9048.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	2	3	4	8	40	27	40	27	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900220	12	94208640	TA	T	360	PASS	CRADD	CCDS9048.1	r.?	-	-	Del	intronic	D	94208640	94208649	1	7	324.531	-	-	8	1	1	CRADD|CCDS9048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRADD|CCDS9048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	6	0	6	2	24	23	24	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900372	12	94617987	TC	T	480	PASS	PLXNC1	CCDS9049.1	r.?	-	-	Del	intronic	D	94617987	94617994	1	24	430.3	-	-	6	1	1	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	3	5	6	5	36	26	36	26	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900437	12	94891620	AT	A	360	PASS	-	-	-	-	-	Del	-	D	94891620	94891630	1	15	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	3	7	21	22	21	22	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900457	12	94960284	G	GC	300	PASS	TMCC3	CCDS31877.1	r.?	-	-	Ins	downstream	I	94960284	94960293	1	12	265.626	-	-	8	1	1	TMCC3|CCDS31877.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TMCC3|CCDS31877.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	5	14	5	14	0	0	./.	3	2	4	3	20	25	20	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759900988	12	96035570	CTT	C	329	PASS	-	-	-	-	-	Del	-	D	96035570	96035574	2	12	324.531	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	5	3	8	17	22	17	22	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759901456	12	97134840	AT	A	389	PASS	C12orf63	CCDS9062.1	r.?	-	-	Del	intronic	D	97134840	97134848	1	20	376.814	-	-	7	1	1	C12orf63|CCDS9062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf63|CCDS9062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	4	7	34	22	34	22	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759901507	12	97294545	GT	G	360	PASS	-	-	-	-	-	Del	-	D	97294545	97294555	1	12	324.531	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	5	3	6	27	27	27	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759901580	12	97527989	GA	G	480	PASS	-	-	-	-	-	Del	-	D	97527989	97527999	1	21	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	4	19	4	19	0	0	./.	2	6	2	9	21	32	21	32	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759901921	12	98734411	CT	C	300	PASS	-	-	-	-	-	Del	-	D	98734411	98734421	1	10	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	2	5	9	19	9	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902057	12	99037917	T	TG	269	PASS	APAF1	CCDS9069.1	r.?	-	-	Ins	upstream	I	99037917	99037922	1	12	267.432	-	-	4	1	1	APAF1|CCDS9069.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	IKBIP|CCDS9068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	5	3	28	27	28	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902150	12	99369565	TGA	T	269	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99369565	99369581	2	10	270.443	-	-	7	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	1	4	1	4	13	36	13	36	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902220	12	99571124	CT	C	420	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99571124	99571133	1	20	378.62	-	-	8	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	3	4	3	4	27	17	27	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902230	12	99605992	TA	T	300	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99605992	99605999	1	6	270.443	-	-	6	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	0	5	2	6	23	34	23	34	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902234	12	99611430	G	GT	360	PASS	ANKS1B	ENST00000329257	r.?	-	-	Ins	intronic	I	99611430	99611440	1	15	317.306	-	-	9	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	5	4	29	21	30	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902356	12	100166681	TC	T	420	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	100166681	100166689	1	14	377.416	-	-	7	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	1	6	1	7	23	27	23	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902394	12	100352279	GC	G	480	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	100352279	100352286	1	16	431.504	-	-	6	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	25	11	25	0	0	./.	1	7	3	8	23	26	23	26	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902423	12	100500533	TA	T	360	PASS	UHRF1BP1L	CCDS31882.1	r.?	-	-	Del	intronic	D	100500533	100500543	1	16	324.531	-	-	9	1	1	UHRF1BP1L|CCDS31882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UHRF1BP1L|CCDS31882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	3	5	6	19	27	19	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902550	12	100990255	AT	A	300	PASS	GAS2L3	CCDS9079.1	r.?	-	-	Del	intronic	D	100990255	100990265	1	10	270.443	-	-	9	1	1	GAS2L3|CCDS9079.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS2L3|CCDS9079.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	1	4	1	6	21	27	21	27	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902582	12	101120663	GA	G	360	PASS	-	-	-	-	-	Del	-	D	101120663	101120671	1	15	324.531	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	4	8	14	32	14	32	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902706	12	101609366	GT	G	420	PASS	-	-	-	-	-	Del	-	D	101609366	101609370	1	14	378.62	-	-	3	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	1	11	1	33	24	33	24	11	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759902941	12	102233981	GGAGT	G	358	PASS	-	-	-	-	-	Del	-	D	102233981	102233994	4	20	375.609	-	-	3	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	4	4	29	16	29	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903026	12	102385371	CT	C	300	PASS	-	-	-	-	-	Del	-	D	102385371	102385379	1	12	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	2	3	3	3	29	15	29	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903037	12	102453262	CAGG	C	300	PASS	CCDC53	CCDS44959.1	r.?	-	-	Del	intronic	D	102453262	102453272	3	10	270.443	-	-	3	1	1	CCDC53|CCDS44959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC53|CCDS44959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	5	2	28	17	28	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903078	12	102732833	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	102732833	102732840	2	10	269.841	-	-	3	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	1	4	2	4	30	20	30	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903183	12	103096427	AT	A	300	PASS	-	-	-	-	-	Del	-	D	103096427	103096436	1	10	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	1	4	1	4	20	25	20	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903209	12	103260875	T	TA	420	PASS	PAH	ENST00000307000	r.?	-	-	Ins	intronic	I	103260875	103260881	1	20	374.405	-	-	5	1	1	PAH|ENST00000307000|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PAH|ENST00000307000|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	4	4	5	30	29	30	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903329	12	103728702	A	AT	420	PASS	C12orf42	CCDS44963.1	r.?	-	-	Ins	intronic	I	103728702	103728712	1	18	373.201	-	-	9	1	1	C12orf42|CCDS44963.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf42|CCDS44963.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	5	2	8	4	28	34	28	34	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903359	12	103855226	GA	G	360	PASS	C12orf42	CCDS44963.1	r.?	-	-	Del	intronic	D	103855226	103855236	1	7	324.531	-	-	9	1	1	C12orf42|CCDS44963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf42|CCDS44963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	6	0	8	1	32	10	32	10	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903482	12	104255534	TA	T	300	PASS	ENSG00000187809	ENST00000434328	r.?	-	-	Del	intronic	D	104255534	104255544	1	10	270.443	-	-	9	1	1	ENSG00000187809|ENST00000434328|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000187809|ENST00000434328|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	1	4	13	7	13	7	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903678	12	104680134	TA	T	300	PASS	TXNRD1	ENST00000429002	r.?	-	-	Del	intronic	D	104680134	104680143	1	10	268.636	-	-	8	1	1	TXNRD1|ENST00000429002|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNRD1|ENST00000429002|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	3	4	22	26	22	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759903827	12	105042433	CA	C	420	PASS	CHST11	CCDS9099.1	r.?	-	-	Del	intronic	D	105042433	105042443	1	18	376.814	-	-	9	1	1	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	5	3	7	26	32	26	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904098	12	106003241	G	GT	449	PASS	-	-	-	-	-	Ins	-	I	106003241	106003250	1	24	411.636	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	3	8	4	32	25	34	25	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904187	12	106366837	GA	G	480	PASS	-	-	-	-	-	Del	-	D	106366837	106366847	1	21	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	6	2	6	6	26	6	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904230	12	106583508	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	106583508	106583523	2	10	266.228	-	-	7	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	1	4	1	3	35	35	35	35	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904344	12	106892452	CG	C	300	PASS	POLR3B	CCDS9105.1	r.?	-	-	Del	intronic	D	106892452	106892460	1	10	269.841	-	-	7	1	1	POLR3B|CCDS9105.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLR3B|CCDS9105.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	1	4	1	5	16	25	16	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904360	12	106929042	GT	G	480	PASS	-	-	-	-	-	Del	-	D	106929042	106929048	1	25	432.708	-	-	5	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	4	6	6	16	30	16	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904397	12	107052780	CA	C	509	PASS	RFX4	CCDS9106.1	r.?	-	-	Del	intronic	D	107052780	107052787	1	30	486.797	-	-	6	1	1	RFX4|CCDS9106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX4|CCDS9106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	5	4	7	6	27	25	27	25	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904433	12	107194145	AG	A	480	PASS	RIC8B	CCDS9109.2	r.?	-	-	Del	intronic	D	107194145	107194151	1	24	430.3	-	-	5	1	1	RIC8B|CCDS9109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIC8B|CCDS9109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	3	6	4	28	30	28	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904541	12	107489840	CA	C	420	PASS	CRY1	CCDS9112.1	r.?	-	-	Del	upstream	D	107489840	107489846	1	20	378.62	-	-	5	1	1	CRY1|CCDS9112.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CRY1|CCDS9112.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	20	8	20	8	0	0	./.	4	3	7	3	33	16	33	16	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904569	12	107572031	AT	A	277	PASS	-	-	-	-	-	Del	-	D	107572031	107572039	1	12	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	3	2	5	2	23	21	23	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904573	12	107582145	AG	A	256	PASS	-	-	-	-	-	Del	-	D	107582145	107582150	1	18	378.62	-	-	4	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	2	6	4	33	19	33	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904619	12	107747034	TG	T	840	PASS	BTBD11	CCDS31893.1	r.?	-	-	Del	intronic	D	107747034	107747042	1	63	757.239	-	-	7	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	8	6	8	6	32	24	32	24	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904650	12	107879226	CCTT	C	300	PASS	BTBD11	CCDS31893.1	r.?	-	-	Del	intronic	D	107879226	107879238	3	12	270.443	-	-	3	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	4	4	23	28	23	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904697	12	108048734	GCT	G	300	PASS	BTBD11	CCDS31893.1	r.?	-	-	Del	intronic	D	108048734	108048749	2	10	270.443	-	-	7	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	1	4	1	6	2	31	2	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759904713	12	108088464	GT	G	420	PASS	PWP1	CCDS9114.1	r.?	-	-	Del	intronic	D	108088464	108088473	1	18	378.018	-	-	8	1	1	PWP1|CCDS9114.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PWP1|CCDS9114.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	5	3	8	19	30	19	30	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905207	12	109593401	TTC	T	360	PASS	ACACB	CCDS31898.1	r.?	-	-	Del	intronic	D	109593401	109593404	2	15	324.531	-	-	1	1	1	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	20	7	20	0	0	./.	2	4	5	4	36	25	36	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905316	12	109844454	GA	G	420	PASS	-	-	-	-	-	Del	-	D	109844454	109844462	1	18	378.62	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	2	6	2	24	9	24	9	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905408	12	110044287	AT	A	300	PASS	-	-	-	-	-	Del	-	D	110044287	110044297	1	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	3	14	3	14	0	0	./.	2	3	3	4	28	20	28	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905436	12	110101274	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	110101274	110101283	1	10	267.432	-	-	8	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	4	2	5	24	38	24	38	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905453	12	110136508	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	110136508	110136515	1	20	374.405	-	-	6	1	1	-	-	./.	0	0	0	0	8	5	9	5	0	0	./.	4	3	7	3	38	23	38	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905462	12	110184293	C	CA	360	PASS	C12orf34	CCDS9133.1	r.?	-	-	Ins	intronic	I	110184293	110184302	1	15	320.919	-	-	8	1	1	C12orf34|CCDS9133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf34|CCDS9133.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	15	16	0	0	./.	2	4	3	5	27	34	27	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905525	12	110313729	AAAG	A	387	PASS	GLTP	CCDS9136.1	r.?	-	-	Del	intronic	D	110313729	110313733	3	24	432.708	-	-	1	1	1	GLTP|CCDS9136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLTP|CCDS9136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	5	3	6	26	31	26	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905680	12	110762066	AT	A	420	PASS	ATP2A2	CCDS9144.1	r.?	-	-	Del	intronic	D	110762066	110762075	1	20	378.62	-	-	8	1	1	ATP2A2|CCDS9144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP2A2|CCDS9144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	3	4	21	26	21	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905846	12	111119799	GT	G	569	PASS	HVCN1	CCDS31900.1	r.?	-	-	Del	intronic	D	111119799	111119809	1	36	540.283	-	-	9	1	1	HVCN1|CCDS31900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HVCN1|CCDS31900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	5	5	6	26	23	26	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905887	12	111213796	GA	G	300	PASS	-	-	-	-	-	Del	-	D	111213796	111213805	1	12	260.81	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	3	5	5	32	11	32	11	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905962	12	111381554	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	111381554	111381564	1	15	320.317	-	-	9	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	4	2	4	2	32	17	32	17	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759905993	12	111468912	A	AT	300	PASS	CUX2	CCDS41837.1	r.?	-	-	Ins	upstream	I	111468912	111468920	1	6	267.432	-	-	7	1	1	CUX2|CCDS41837.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CUX2|CCDS41837.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	17	16	18	16	0	0	./.	0	5	0	6	20	30	20	30	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906008	12	111540668	CA	C	420	PASS	CUX2	CCDS41837.1	r.?	-	-	Del	intronic	D	111540668	111540678	1	20	376.814	-	-	9	1	1	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	4	3	4	3	22	24	22	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906144	12	111940231	C	CT	360	PASS	ATXN2	CCDS31902.1	r.?	-	-	Ins	intronic	I	111940231	111940241	1	15	320.919	-	-	9	1	1	ATXN2|CCDS31902.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATXN2|CCDS31902.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	14	0	0	./.	2	4	4	4	38	27	38	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906170	12	112007242	GA	G	300	PASS	ATXN2	CCDS31902.1	r.?	-	-	Del	intronic	D	112007242	112007251	1	12	266.83	-	-	8	1	1	ATXN2|CCDS31902.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN2|CCDS31902.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	3	2	28	26	28	26	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906242	12	112151733	TC	T	420	PASS	ACAD10	CCDS44973.1	r.?	-	-	Del	intronic	D	112151733	112151743	1	18	363.568	-	-	9	1	1	ACAD10|CCDS44973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACAD10|CCDS44973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	5	4	8	22	29	22	29	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906371	12	112476834	TA	T	420	PASS	NAA25	CCDS9159.1	r.?	-	-	Del	intronic	D	112476834	112476844	1	20	378.018	-	-	9	1	1	NAA25|CCDS9159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAA25|CCDS9159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	4	5	4	25	32	25	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906475	12	112809385	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	112809385	112809395	1	12	257.197	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	4	3	21	30	21	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906490	12	112837751	CA	C	480	PASS	-	-	-	-	-	Del	-	D	112837751	112837761	1	24	430.902	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	5	3	5	3	26	31	26	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906518	12	112914809	CT	C	300	PASS	PTPN11	CCDS9163.1	r.?	-	-	Del	intronic	D	112914809	112914819	1	12	270.443	-	-	9	1	1	PTPN11|CCDS9163.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN11|CCDS9163.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	3	3	24	23	24	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906718	12	113593481	GA	G	360	PASS	DDX54	CCDS44984.1	r.?	-	-	Del	downstream	D	113593481	113593491	1	12	324.531	-	-	9	1	1	DDX54|CCDS44984.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CCDC42B|CCDS44983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	1	5	1	31	23	31	23	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906783	12	113841767	AC	A	420	PASS	SDS	CCDS9169.1	r.?	-	-	Del	upstream	D	113841767	113841776	1	14	373.201	-	-	8	1	1	SDS|CCDS9169.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SDS|CCDS9169.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	7	18	7	0	0	./.	6	1	7	2	26	29	26	29	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906809	12	113905273	TC	T	480	PASS	LHX5	CCDS9171.1	r.?	-	-	Del	intronic	D	113905273	113905281	1	9	432.708	-	-	7	1	1	LHX5|CCDS9171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHX5|CCDS9171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	8	0	9	0	33	32	33	32	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906933	12	114231870	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	114231870	114231875	2	12	324.531	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	5	1	5	13	26	13	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906952	12	114315713	G	GA	360	PASS	RBM19	CCDS9172.1	r.?	-	-	Ins	intronic	I	114315713	114315721	1	15	320.919	-	-	7	1	1	RBM19|CCDS9172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM19|CCDS9172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	2	4	5	5	27	25	27	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759906975	12	114371475	AG	A	300	PASS	RBM19	CCDS9172.1	r.?	-	-	Del	intronic	D	114371475	114371481	1	12	270.443	-	-	5	1	1	RBM19|CCDS9172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM19|CCDS9172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	4	3	20	23	20	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907015	12	114500335	TA	T	387	PASS	-	-	-	-	-	Del	-	D	114500335	114500343	1	48	649.062	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	7	6	7	20	31	20	31	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907187	12	114986594	AT	A	300	PASS	-	-	-	-	-	Del	-	D	114986594	114986603	1	12	269.239	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	3	2	31	18	31	18	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907541	12	115909434	TA	T	360	PASS	-	-	-	-	-	Del	-	D	115909434	115909442	1	16	324.531	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	3	8	3	21	27	21	27	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907558	12	115975028	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	115975028	115975037	1	15	319.113	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	14	0	0	./.	4	2	5	5	29	14	29	14	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907562	12	115990408	AT	A	420	PASS	-	-	-	-	-	Del	-	D	115990408	115990417	1	14	378.62	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	1	6	2	8	22	26	22	26	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907767	12	116668038	CA	C	420	PASS	MED13L	CCDS9177.1	r.?	-	-	Del	intronic	D	116668038	116668047	1	14	361.762	-	-	8	1	1	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	1	6	4	7	17	21	17	21	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907837	12	116815086	TA	T	300	PASS	-	-	-	-	-	Del	-	D	116815086	116815094	1	10	268.034	-	-	7	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	1	4	3	6	27	33	27	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759907910	12	116988155	GCT	G	480	PASS	-	-	-	-	-	Del	-	D	116988155	116988173	2	24	432.708	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	5	6	6	29	18	29	18	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908244	12	117845824	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	117845824	117845828	2	20	378.62	-	-	3	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	4	3	4	35	41	35	41	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908263	12	117902289	CT	C	480	PASS	KSR2	ENST00000425217	r.5535delA	c.?	p.?	Del	3'UTR variant	D	117902289	117902299	1	24	427.892	-	-	9	1	1	KSR2|ENST00000425217|r.5535delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	KSR2|ENST00000425217|r.5535delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	7	3	25	35	25	35	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908324	12	118155323	C	CA	360	PASS	KSR2	ENST00000425217	r.?	-	-	Ins	intronic	I	118155323	118155329	1	15	320.919	-	-	5	1	1	KSR2|ENST00000425217|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KSR2|ENST00000425217|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	2	5	16	36	16	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908523	12	118570769	CA	C	420	PASS	PEBP1	CCDS9187.1	r.?	-	-	Del	upstream	D	118570769	118570778	1	8	378.62	-	-	8	1	1	PEBP1|CCDS9187.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PEBP1|CCDS9187.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	3	9	3	9	0	0	./.	0	7	2	7	5	30	5	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908530	12	118583914	A	AG	360	PASS	TAOK3	CCDS9188.1	r.?	-	-	Ins	downstream	I	118583914	118583923	1	15	319.113	-	-	8	1	1	TAOK3|CCDS9188.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TAOK3|CCDS9188.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	6	7	6	0	0	./.	4	2	6	2	28	21	28	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908538	12	118600471	GA	G	360	PASS	TAOK3	CCDS9188.1	r.?	-	-	Del	intronic	D	118600471	118600481	1	15	324.531	-	-	9	1	1	TAOK3|CCDS9188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAOK3|CCDS9188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	4	5	21	26	21	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908605	12	118816206	CT	C	420	PASS	SUDS3	CCDS44993.1	r.?	-	-	Del	intronic	D	118816206	118816216	1	18	378.62	-	-	9	1	1	SUDS3|CCDS44993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUDS3|CCDS44993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	2	5	3	7	10	24	10	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759908944	12	119757453	GA	G	480	PASS	-	-	-	-	-	Del	-	D	119757453	119757463	1	24	432.708	-	-	9	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	5	3	5	4	17	24	17	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759909418	12	120972819	TG	T	329	PASS	RNF10	CCDS9201.1	r.?	-	-	Del	intronic	D	120972819	120972824	1	16	322.123	-	-	4	1	1	RNF10|CCDS9201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF10|CCDS9201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	3	4	3	19	22	19	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759909856	12	121764702	CA	C	360	PASS	ANAPC5	CCDS9220.1	r.?	-	-	Del	intronic	D	121764702	121764710	1	7	323.327	-	-	7	1	1	ANAPC5|CCDS9220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANAPC5|CCDS9220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	2	14	2	0	0	./.	0	6	1	11	20	31	20	31	1	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910082	12	122316264	GT	G	269	PASS	-	-	-	-	-	Del	-	D	122316264	122316272	1	12	270.443	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	6	4	25	32	25	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910141	12	122421141	CA	C	300	PASS	WDR66	CCDS41853.1	r.?	-	-	Del	intronic	D	122421141	122421151	1	12	270.443	-	-	9	1	1	WDR66|CCDS41853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR66|CCDS41853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	3	3	22	27	22	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910191	12	122490515	CTG	C	360	PASS	BCL7A	CCDS9226.1	r.?	-	-	Del	intronic	D	122490515	122490520	2	12	324.531	-	-	2	1	1	BCL7A|CCDS9226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL7A|CCDS9226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	1	5	2	5	24	28	24	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910338	12	122798281	CA	C	300	PASS	CLIP1	CCDS9232.1	r.?	-	-	Del	intronic	D	122798281	122798291	1	12	270.443	-	-	9	1	1	CLIP1|CCDS9232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIP1|CCDS9232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	2	3	2	5	29	31	29	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910401	12	122901546	CA	C	480	PASS	CLIP1	CCDS9232.1	r.?	-	-	Del	intronic	D	122901546	122901556	1	21	432.708	-	-	9	1	1	CLIP1|CCDS9232.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CLIP1|CCDS9232.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	6	2	6	3	25	25	25	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910583	12	123247375	CT	C	329	PASS	DENR	CCDS45003.1	r.?	-	-	Del	intronic	D	123247375	123247385	1	15	324.531	-	-	9	1	1	DENR|CCDS45003.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DENR|CCDS45003.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	2	4	2	5	12	27	12	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910601	12	123276006	CT	C	300	PASS	CCDC62	CCDS9238.1	r.?	-	-	Del	intronic	D	123276006	123276015	1	10	268.034	-	-	8	1	1	CCDC62|CCDS9238.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC62|CCDS9238.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	4	2	27	15	27	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910642	12	123360150	AG	A	298	PASS	VPS37B	CCDS9239.1	r.?	-	-	Del	intronic	D	123360150	123360157	1	12	324.531	-	-	6	1	1	VPS37B|CCDS9239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS37B|CCDS9239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	1	5	2	6	27	14	27	14	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910706	12	123584183	GT	G	420	PASS	PITPNM2	CCDS9242.1	r.?	-	-	Del	intronic	D	123584183	123584191	1	18	378.018	-	-	7	1	1	PITPNM2|CCDS9242.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PITPNM2|CCDS9242.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	2	5	2	28	13	28	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910708	12	123593795	GA	G	600	PASS	PITPNM2	CCDS9242.1	r.?	-	-	Del	intronic	D	123593795	123593803	1	35	540.885	-	-	7	1	1	PITPNM2|CCDS9242.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PITPNM2|CCDS9242.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	6	5	7	26	34	26	34	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910947	12	123958907	CT	C	300	PASS	RILPL1	CCDS45006.1	r.?	-	-	Del	intronic	D	123958907	123958917	1	12	270.443	-	-	9	1	1	RILPL1|CCDS45006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RILPL1|CCDS45006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	4	30	23	30	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759910959	12	123990183	G	GT	480	PASS	RILPL1	CCDS45006.1	r.?	-	-	Ins	intronic	I	123990183	123990192	1	21	427.892	-	-	8	1	1	RILPL1|CCDS45006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RILPL1|CCDS45006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	12	0	0	./.	6	2	6	2	20	25	20	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911004	12	124072282	G	GT	480	PASS	TMED2	CCDS9250.1	r.?	-	-	Ins	intronic	I	124072282	124072290	1	24	427.892	-	-	7	1	1	TMED2|CCDS9250.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMED2|CCDS9250.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	5	3	5	18	42	18	43	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911175	12	124515996	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	124515996	124515999	1	12	266.228	-	-	2	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	2	4	2	25	9	25	9	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911245	12	124674597	AT	A	420	PASS	-	-	-	-	-	Del	-	D	124674597	124674607	1	20	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	3	4	3	22	29	22	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911363	12	125095235	TA	T	300	PASS	-	-	-	-	-	Del	-	D	125095235	125095244	1	12	270.443	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	6	3	29	27	29	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911461	12	125351357	C	CT	360	PASS	SCARB1	CCDS9259.1	r.?	-	-	Ins	upstream	I	125351357	125351367	1	15	320.919	-	-	9	1	1	SCARB1|CCDS9259.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	AC126309.2|ENST00000501570|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	4	2	7	29	38	30	39	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911551	12	125493690	AT	A	420	PASS	BRI3BP	CCDS9262.1	r.?	-	-	Del	intronic	D	125493690	125493699	1	20	378.62	-	-	8	1	1	BRI3BP|CCDS9262.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRI3BP|CCDS9262.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	4	18	4	0	0	./.	3	4	5	4	24	17	24	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911725	12	126049511	GA	G	300	PASS	TMEM132B	CCDS41859.1	r.?	-	-	Del	intronic	D	126049511	126049517	1	10	270.443	-	-	5	1	1	TMEM132B|CCDS41859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132B|CCDS41859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	4	6	23	34	23	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911759	12	126188026	AT	A	360	PASS	-	-	-	-	-	Del	-	D	126188026	126188031	1	15	324.531	-	-	4	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	2	5	2	26	16	26	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911808	12	126302791	CT	C	780	PASS	-	-	-	-	-	Del	-	D	126302791	126302800	1	44	702.549	-	-	8	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	10	3	11	21	43	21	43	3	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911890	12	126585144	GT	G	660	PASS	-	-	-	-	-	Del	-	D	126585144	126585153	1	40	594.974	-	-	8	1	-	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	7	7	7	29	30	29	30	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759911956	12	126861754	AT	A	360	PASS	-	-	-	-	-	Del	-	D	126861754	126861762	1	16	323.929	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	3	4	26	26	26	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912191	12	127538882	AT	A	300	PASS	AC078878.2	ENST00000512624	r.?	-	-	Del	intronic	D	127538882	127538888	1	12	270.443	-	-	5	1	1	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	20	8	20	0	0	./.	3	2	3	2	23	25	23	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912297	12	127853306	CA	C	300	PASS	-	-	-	-	-	Del	-	D	127853306	127853312	1	12	269.239	-	-	5	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	3	3	20	23	20	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912307	12	127866833	T	TTG	300	PASS	-	-	-	-	-	Ins	-	I	127866833	127866848	2	10	264.422	-	-	7	1	1	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	1	4	1	6	6	32	6	32	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912335	12	127941484	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	127941484	127941491	1	12	267.432	-	-	6	1	1	-	-	./.	0	0	0	0	7	21	7	22	0	0	./.	3	2	3	3	15	33	15	34	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912394	12	128080989	TA	T	360	PASS	-	-	-	-	-	Del	-	D	128080989	128080996	1	7	322.725	-	-	6	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	0	6	0	8	21	25	21	25	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912398	12	128091265	TA	T	360	PASS	-	-	-	-	-	Del	-	D	128091265	128091274	1	15	324.531	-	-	8	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	4	5	4	19	31	19	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912505	12	128332836	CA	C	420	PASS	-	-	-	-	-	Del	-	D	128332836	128332846	1	20	378.62	-	-	9	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	4	3	8	3	31	13	31	13	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912785	12	129046602	C	CA	300	PASS	TMEM132C	CCDS45009.1	r.?	-	-	Ins	intronic	I	129046602	129046605	1	6	266.228	-	-	2	1	1	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	0	8	1	30	18	31	18	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912923	12	129401592	GT	G	300	PASS	GLT1D1	CCDS9265.1	r.?	-	-	Del	intronic	D	129401592	129401602	1	12	270.443	-	-	9	1	1	GLT1D1|CCDS9265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLT1D1|CCDS9265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	2	5	3	21	21	21	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759912945	12	129448208	GT	G	480	PASS	GLT1D1	CCDS9265.1	r.?	-	-	Del	intronic	D	129448208	129448216	1	25	432.708	-	-	7	1	1	GLT1D1|CCDS9265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLT1D1|CCDS9265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	4	4	6	7	27	25	27	25	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759913015	12	129608336	TTC	T	360	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Del	intronic	D	129608336	129608353	2	15	324.531	-	-	8	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	3	5	29	25	29	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759913066	12	129728090	AT	A	360	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Del	intronic	D	129728090	129728099	1	7	324.531	-	-	8	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	6	0	8	0	28	8	28	8	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759913098	12	129839835	CT	C	600	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Del	intronic	D	129839835	129839845	1	35	540.283	-	-	9	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	4	6	4	10	25	34	25	34	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759913112	12	129865387	A	AT	300	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Ins	intronic	I	129865387	129865396	1	12	267.432	-	-	8	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	19	0	0	./.	3	2	4	4	34	33	34	33	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759913530	12	131029569	GT	G	360	PASS	-	-	-	-	-	Del	-	D	131029569	131029577	1	15	324.531	-	-	7	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	3	5	18	19	18	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914000	12	132306586	CA	C	360	PASS	-	-	-	-	-	Del	-	D	132306586	132306596	1	16	320.317	-	-	9	1	-	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	4	6	31	34	31	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914008	12	132330418	C	CA	480	PASS	MMP17	CCDS31927.1	r.?	-	-	Ins	intronic	I	132330418	132330424	1	21	426.086	-	-	5	1	1	MMP17|CCDS31927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MMP17|CCDS31927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	14	6	14	0	0	./.	6	2	9	4	26	30	26	30	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914125	12	132860898	G	GCA	300	PASS	GALNT9	CCDS41866.1	r.?	-	-	Ins	intronic	I	132860898	132860914	2	12	261.412	-	-	7	1	-	GALNT9|CCDS41866.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GALNT9|CCDS41866.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	3	2	4	2	32	21	33	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914216	12	133118031	CG	C	420	PASS	FBRSL1	CCDS45010.1	r.?	-	-	Del	intronic	D	133118031	133118036	1	20	373.201	-	-	4	1	1	FBRSL1|CCDS45010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBRSL1|CCDS45010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	3	4	3	29	18	29	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914218	12	133123293	AC	A	269	PASS	FBRSL1	CCDS45010.1	r.?	-	-	Del	intronic	D	133123293	133123302	1	12	270.443	-	-	8	1	1	FBRSL1|CCDS45010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBRSL1|CCDS45010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	3	4	22	13	22	13	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914441	12	133607196	G	GT	360	PASS	AC073911.3	ENST00000443154	r.?	-	-	Ins	downstream	I	133607196	133607204	1	15	320.919	-	-	7	1	1	AC073911.3|ENST00000443154|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	AC073911.3|ENST00000443154|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	12	5	12	5	0	0	./.	4	2	7	4	36	44	36	44	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914454	12	133620726	CT	C	480	PASS	ZNF84	CCDS31940.1	r.?	-	-	Del	intronic	D	133620726	133620736	1	21	432.106	-	-	9	1	1	ZNF84|CCDS31940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF84|CCDS31940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	6	2	7	2	18	21	18	21	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914696	13	19461266	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	19461266	19461274	1	20	375.415	-	-	7	1	1	-	-	./.	0	0	0	0	16	11	17	11	0	0	./.	4	3	5	5	22	26	22	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914729	13	19531854	G	GCA	269	PASS	-	-	-	-	-	Ins	-	I	19531854	19531866	2	12	261.531	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	3	34	29	34	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914775	13	19631146	TG	T	300	PASS	-	-	-	-	-	Del	-	D	19631146	19631152	1	12	271.164	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	5	4	28	22	28	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759914803	13	19649945	AG	A	420	PASS	-	-	-	-	-	Del	-	D	19649945	19649949	1	20	376.017	-	-	3	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	3	4	4	6	57	46	57	46	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759915106	13	20219116	AT	A	300	PASS	MPHOSPH8	CCDS9287.1	r.?	-	-	Del	intronic	D	20219116	20219126	1	10	265.144	-	-	9	1	1	MPHOSPH8|CCDS9287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MPHOSPH8|CCDS9287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	4	1	5	2	25	17	25	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759915180	13	20359546	CT	C	360	PASS	PSPC1	CCDS41870.1	r.?	-	-	Del	upstream	D	20359546	20359550	1	16	325.397	-	-	3	1	1	PSPC1|CCDS41870.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PSPC1|CCDS41870.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	4	25	28	25	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759915834	13	21696377	CA	C	329	PASS	-	-	-	-	-	Del	-	D	21696377	21696387	1	15	324.193	-	-	9	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	4	4	13	25	13	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759915982	13	22061714	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	22061714	22061721	1	10	262.735	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	4	1	26	14	26	14	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916192	13	22564441	GT	G	300	PASS	-	-	-	-	-	Del	-	D	22564441	22564449	1	12	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	3	4	9	16	9	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916278	13	22824162	TA	T	600	PASS	AL137248.1	ENST00000413646	r.?	-	-	Del	intronic	D	22824162	22824168	1	35	538.114	-	-	5	1	1	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	6	4	7	5	35	26	35	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916300	13	22878959	CA	C	300	PASS	-	-	-	-	-	Del	-	D	22878959	22878969	1	12	269.96	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	5	4	27	35	27	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916326	13	22953095	GA	G	509	PASS	-	-	-	-	-	Del	-	D	22953095	22953103	1	28	486.891	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	6	3	7	3	30	20	30	20	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916397	13	23159135	GT	G	480	PASS	-	-	-	-	-	Del	-	D	23159135	23159141	1	16	433.863	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	7	2	10	31	37	31	37	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916641	13	23665136	CT	C	360	PASS	-	-	-	-	-	Del	-	D	23665136	23665146	1	15	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	4	2	5	2	28	27	28	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916840	13	24129030	GGA	G	360	PASS	-	-	-	-	-	Del	-	D	24129030	24129033	2	16	325.397	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	5	32	24	32	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916955	13	24450142	GT	G	360	PASS	MIPEP	CCDS9303.1	r.?	-	-	Del	intronic	D	24450142	24450148	1	12	325.397	-	-	5	1	1	MIPEP|CCDS9303.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIPEP|CCDS9303.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	1	5	1	22	4	22	4	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759916958	13	24475300	CA	C	420	PASS	ENSG00000205863	CCDS31947.1	r.?	-	-	Del	upstream	D	24475300	24475310	1	18	379.63	-	-	9	1	1	ENSG00000205863|CCDS31947.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000205863|CCDS31947.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	2	5	4	6	30	19	30	19	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917273	13	25241319	TAGG	T	420	PASS	-	-	-	-	-	Del	-	D	25241319	25241328	3	20	379.028	-	-	2	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	5	4	32	21	32	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917471	13	25610392	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	25610392	25610401	1	16	321.785	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	3	5	23	34	23	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917619	13	26018460	CT	C	420	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Del	intronic	D	26018460	26018470	1	20	379.63	-	-	9	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	4	3	5	3	26	23	26	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917661	13	26094494	A	AT	300	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Ins	intronic	I	26094494	26094501	1	10	266.348	-	-	6	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	1	4	15	29	15	29	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917701	13	26193668	TA	T	360	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Del	intronic	D	26193668	26193676	1	16	325.397	-	-	7	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	4	4	20	25	20	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917798	13	26461968	G	GT	360	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Ins	intronic	I	26461968	26461978	1	16	321.785	-	-	9	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	3	3	4	5	25	26	25	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917813	13	26508965	GA	G	420	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Del	intronic	D	26508965	26508974	1	14	379.63	-	-	8	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	1	6	2	8	26	25	26	25	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759917839	13	26593943	CA	C	360	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Del	intronic	D	26593943	26593952	1	12	322.387	-	-	8	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	1	5	4	7	28	31	28	31	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918000	13	27085913	CT	C	300	PASS	-	-	-	-	-	Del	-	D	27085913	27085923	1	12	270.562	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	3	4	24	30	24	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918018	13	27152152	CT	C	540	PASS	WASF3	CCDS9318.1	r.?	-	-	Del	intronic	D	27152152	27152161	1	24	488.095	-	-	8	1	1	WASF3|CCDS9318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	WASF3|CCDS9318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	7	2	7	13	24	13	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918029	13	27185401	AT	A	360	PASS	WASF3	CCDS9318.1	r.?	-	-	Del	intronic	D	27185401	27185407	1	12	325.397	-	-	5	1	1	WASF3|CCDS9318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	WASF3|CCDS9318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	1	5	3	8	25	25	25	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918157	13	27490466	GT	G	360	PASS	-	-	-	-	-	Del	-	D	27490466	27490476	1	12	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	5	2	6	28	29	28	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918158	13	27496441	CG	C	600	PASS	-	-	-	-	-	Del	-	D	27496441	27496443	1	36	542.328	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	5	6	5	30	19	30	19	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918160	13	27499806	TA	T	389	PASS	-	-	-	-	-	Del	-	D	27499806	27499816	1	18	379.63	-	-	9	1	-	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	5	3	8	22	32	22	32	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918211	13	27623620	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	27623620	27623629	1	12	268.154	-	-	8	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	5	3	31	31	32	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918250	13	27716085	CA	C	300	PASS	USP12	CCDS31952.1	r.?	-	-	Del	intronic	D	27716085	27716095	1	12	271.164	-	-	9	1	1	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	4	4	21	35	21	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918506	13	28434945	AT	A	480	PASS	AL390738.2	ENST00000499662	r.?	-	-	Del	intronic	D	28434945	28434951	1	21	433.863	-	-	5	1	1	AL390738.2|ENST00000499662|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL390738.2|ENST00000499662|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	6	4	6	21	25	21	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918545	13	28502374	TG	T	360	PASS	PDX1	CCDS9327.1	r.?	-	-	Del	downstream	D	28502374	28502380	1	15	325.397	-	-	5	1	1	PDX1|CCDS9327.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PDX1|CCDS9327.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	5	12	5	0	0	./.	2	4	2	4	24	33	24	33	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918567	13	28548805	AC	A	389	PASS	PRHOXNB	CCDS45020.1	r.?	-	-	Del	downstream	D	28548805	28548811	1	18	379.63	-	-	5	1	1	PRHOXNB|CCDS45020.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRHOXNB|CCDS45020.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	13	14	13	0	0	./.	2	5	4	6	25	26	25	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918766	13	28945013	CT	C	420	PASS	FLT1	CCDS9330.1	r.?	-	-	Del	intronic	D	28945013	28945021	1	20	379.63	-	-	7	1	1	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	4	4	4	22	21	22	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918946	13	29473555	CT	C	300	PASS	-	-	-	-	-	Del	-	D	29473555	29473565	1	12	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	3	5	21	32	21	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759918948	13	29489057	CT	C	480	PASS	-	-	-	-	-	Del	-	D	29489057	29489066	1	16	431.454	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	7	1	9	1	28	11	28	11	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919082	13	29864248	GA	G	295	PASS	MTUS2	CCDS45022.1	r.?	-	-	Del	intronic	D	29864248	29864254	1	10	271.164	-	-	5	1	1	MTUS2|CCDS45022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTUS2|CCDS45022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	1	4	3	5	30	25	30	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919096	13	29904336	CT	C	415	PASS	MTUS2	CCDS45022.1	r.?	-	-	Del	intronic	D	29904336	29904344	1	20	379.63	-	-	7	1	1	MTUS2|CCDS45022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTUS2|CCDS45022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	4	5	7	33	23	33	23	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919183	13	30115414	TA	T	269	PASS	SLC7A1	CCDS9333.1	r.?	-	-	Del	intronic	D	30115414	30115422	1	12	267.552	-	-	7	1	1	SLC7A1|CCDS9333.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC7A1|CCDS9333.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	4	3	33	18	33	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919205	13	30202417	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	30202417	30202425	1	12	268.154	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	15	14	0	0	./.	2	3	2	3	20	21	20	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919212	13	30227904	CA	C	360	PASS	-	-	-	-	-	Del	-	D	30227904	30227912	1	15	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	6	2	28	22	28	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919374	13	30777686	A	AT	360	PASS	KATNAL1	CCDS31956.1	r.6631_6632insa	c.?	p.?	Ins	3'UTR variant	I	30777686	30777694	1	7	321.785	-	-	7	1	1	KATNAL1|CCDS31956.1|r.6631_6632insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	KATNAL1|CCDS31956.1|r.6631_6632insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	15	14	16	15	0	0	./.	0	6	0	7	1	30	1	30	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919539	13	31091119	TA	T	420	PASS	HMGB1	CCDS9335.1	r.?	-	-	Del	intronic	D	31091119	31091128	1	20	379.63	-	-	8	1	1	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	4	3	5	4	28	19	28	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919565	13	31163052	TA	T	360	PASS	HMGB1	CCDS9335.1	r.?	-	-	Del	intronic	D	31163052	31163062	1	15	324.193	-	-	9	1	1	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	23	10	23	0	0	./.	4	2	4	4	26	23	26	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919676	13	31503766	GT	G	420	PASS	C13orf33	CCDS9338.1	r.?	-	-	Del	downstream	D	31503766	31503772	1	20	377.221	-	-	5	1	1	C13orf33|CCDS9338.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C13orf26|CCDS9339.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	5	17	5	0	0	./.	4	3	6	4	31	22	31	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919722	13	31639368	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	31639368	31639375	1	20	375.415	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	3	5	4	22	23	22	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919727	13	31651337	TCAAA	T	269	PASS	-	-	-	-	-	Del	-	D	31651337	31651345	4	10	271.164	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	1	4	2	27	25	27	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919902	13	32248161	CA	C	420	PASS	-	-	-	-	-	Del	-	D	32248161	32248169	1	14	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	1	6	1	22	23	22	23	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759919916	13	32285483	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	32285483	32285493	1	15	321.785	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	4	6	6	30	42	30	42	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920041	13	32569761	TG	T	360	PASS	-	-	-	-	-	Del	-	D	32569761	32569769	1	15	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	3	7	16	26	16	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920045	13	32576849	AT	A	300	PASS	-	-	-	-	-	Del	-	D	32576849	32576858	1	6	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	0	5	0	24	5	24	5	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920308	13	33320005	AT	A	300	PASS	PDS5B	CCDS41878.1	r.?	-	-	Del	intronic	D	33320005	33320015	1	12	271.164	-	-	9	1	1	PDS5B|CCDS41878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDS5B|CCDS41878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	3	33	16	33	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920523	13	34076001	CT	C	420	PASS	-	-	-	-	-	Del	-	D	34076001	34076011	1	20	379.63	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	3	4	26	22	26	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920537	13	34107001	CA	C	420	PASS	-	-	-	-	-	Del	-	D	34107001	34107006	1	20	379.63	-	-	4	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	3	5	32	32	32	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920603	13	34369348	GA	G	300	PASS	-	-	-	-	-	Del	-	D	34369348	34369357	1	10	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	4	1	5	2	22	19	22	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920959	13	35552864	CT	C	300	PASS	NBEA	CCDS45026.1	r.?	-	-	Del	intronic	D	35552864	35552869	1	12	271.164	-	-	4	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	3	6	19	16	19	16	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920971	13	35601283	CT	C	420	PASS	NBEA	CCDS45026.1	r.?	-	-	Del	intronic	D	35601283	35601289	1	14	379.63	-	-	5	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	6	1	8	1	22	8	22	8	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759920986	13	35693009	TC	T	300	PASS	NBEA	CCDS45026.1	r.?	-	-	Del	intronic	D	35693009	35693011	1	10	268.154	-	-	1	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	2	5	6	20	6	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921075	13	36182329	CT	C	480	PASS	NBEA	CCDS45026.1	r.?	-	-	Del	intronic	D	36182329	36182339	1	25	433.863	-	-	9	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	4	4	5	15	30	15	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921116	13	36299577	CA	C	360	PASS	-	-	-	-	-	Del	-	D	36299577	36299586	1	15	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	4	2	6	18	28	18	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921132	13	36350445	T	TA	540	PASS	DCLK1	CCDS9354.1	r.?	-	-	Ins	intronic	I	36350445	36350454	1	30	481.473	-	-	8	1	1	DCLK1|CCDS9354.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCLK1|CCDS9354.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	21	17	22	0	0	./.	5	4	6	5	29	36	30	37	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921142	13	36382548	TC	T	300	PASS	DCLK1	CCDS9354.1	r.?	-	-	Del	intronic	D	36382548	36382555	1	12	271.164	-	-	6	1	1	DCLK1|CCDS9354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCLK1|CCDS9354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	2	3	3	3	22	28	22	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921276	13	36849343	CA	C	420	PASS	C13orf38	CCDS45027.1	r.?	-	-	Del	intronic	D	36849343	36849353	1	20	373.609	-	-	9	1	1	C13orf38|CCDS45027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C13orf38|CCDS45027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	3	4	4	6	23	20	23	20	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921303	13	36966003	GT	G	420	PASS	-	-	-	-	-	Del	-	D	36966003	36966013	1	18	374.813	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	4	7	22	29	22	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921306	13	36973944	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	36973944	36973951	1	15	321.785	-	-	6	1	-	-	-	./.	0	0	0	0	8	10	9	10	0	0	./.	2	4	4	4	29	39	29	39	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921357	13	37200240	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	37200240	37200249	1	15	321.183	-	-	8	1	1	-	-	./.	0	0	0	0	16	6	16	7	0	0	./.	2	4	3	5	26	38	27	38	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921359	13	37209831	CA	C	360	PASS	-	-	-	-	-	Del	-	D	37209831	37209841	1	12	323.591	-	-	9	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	1	5	1	6	23	19	23	19	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921407	13	37403353	G	GT	660	PASS	RFXAP	CCDS9359.1	r.?	-	-	Ins	downstream	I	37403353	37403361	1	40	589.336	-	-	7	1	1	RFXAP|CCDS9359.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	RFXAP|CCDS9359.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	6	13	7	13	0	0	./.	7	4	9	8	39	25	39	25	9	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921545	13	37782773	AGAT	A	449	PASS	-	-	-	-	-	Del	-	D	37782773	37782780	3	24	433.863	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	3	7	3	27	24	27	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921647	13	38089340	AT	A	480	PASS	-	-	-	-	-	Del	-	D	38089340	38089350	1	24	433.863	-	-	9	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	5	3	6	20	32	20	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921707	13	38236284	TA	T	300	PASS	TRPC4	CCDS45037.1	r.?	-	-	Del	intronic	D	38236284	38236290	1	12	269.358	-	-	5	1	1	TRPC4|CCDS45037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPC4|CCDS45037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	3	2	4	2	20	25	20	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759921809	13	38554170	GA	G	360	PASS	-	-	-	-	-	Del	-	D	38554170	38554179	1	15	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	4	3	4	31	20	31	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922006	13	39128832	GT	G	360	PASS	-	-	-	-	-	Del	-	D	39128832	39128841	1	15	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	4	4	6	24	23	24	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922059	13	39340342	CT	C	540	PASS	FREM2	CCDS31960.1	r.?	-	-	Del	intronic	D	39340342	39340352	1	28	486.289	-	-	9	1	1	FREM2|CCDS31960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FREM2|CCDS31960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	6	3	7	3	21	27	21	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922063	13	39379476	GA	G	300	PASS	FREM2	CCDS31960.1	r.?	-	-	Del	intronic	D	39379476	39379485	1	6	271.164	-	-	8	1	1	FREM2|CCDS31960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FREM2|CCDS31960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	0	5	2	6	12	33	12	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922286	13	40109617	TA	T	300	PASS	LHFP	CCDS9369.1	r.?	-	-	Del	intronic	D	40109617	40109626	1	12	271.164	-	-	8	1	1	LHFP|CCDS9369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFP|CCDS9369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	6	2	18	23	18	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922378	13	40318876	GA	G	327	PASS	COG6	CCDS45042.1	r.?	-	-	Del	intronic	D	40318876	40318885	1	15	325.397	-	-	8	1	1	COG6|CCDS45042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COG6|CCDS45042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	2	5	24	30	24	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922562	13	40949466	CT	C	269	PASS	-	-	-	-	-	Del	-	D	40949466	40949474	1	12	259.725	-	-	7	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	3	4	4	23	21	23	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922593	13	41055249	AC	A	360	PASS	-	-	-	-	-	Del	-	D	41055249	41055256	1	12	324.193	-	-	6	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	1	5	3	6	22	24	22	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922679	13	41370733	C	CT	300	PASS	SLC25A15	CCDS9373.1	r.?	-	-	Ins	intronic	I	41370733	41370740	1	10	268.154	-	-	6	1	1	SLC25A15|CCDS9373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC25A15|CCDS9373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	17	0	0	./.	4	1	6	2	31	31	31	32	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922825	13	41729595	C	CA	360	PASS	AL354696.6	ENST00000499512	r.?	-	-	Ins	intronic	I	41729595	41729604	1	16	315.162	-	-	8	1	1	AL354696.6|ENST00000499512|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL354696.6|ENST00000499512|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	3	3	3	3	20	26	20	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759922981	13	42067254	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	42067254	42067264	1	20	358.558	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	3	4	3	30	39	30	39	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923017	13	42189283	GA	G	480	PASS	KIAA0564	CCDS41881.1	r.?	-	-	Del	intronic	D	42189283	42189293	1	25	432.658	-	-	9	1	1	KIAA0564|CCDS41881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0564|CCDS41881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	4	4	6	4	29	21	29	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923075	13	42400837	C	CA	300	PASS	KIAA0564	CCDS41881.1	r.?	-	-	Ins	intronic	I	42400837	42400847	1	12	268.154	-	-	9	1	1	KIAA0564|CCDS41881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0564|CCDS41881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	5	3	24	16	24	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923152	13	42618423	CT	C	300	PASS	DGKH	CCDS9381.1	r.?	-	-	Del	upstream	D	42618423	42618432	1	10	266.348	-	-	8	1	1	DGKH|CCDS9381.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DGKH|CCDS9381.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	14	16	14	0	0	./.	1	4	2	8	21	24	21	24	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923186	13	42707140	TA	T	277	PASS	DGKH	CCDS9381.1	r.?	-	-	Del	intronic	D	42707140	42707149	1	10	268.756	-	-	8	1	1	DGKH|CCDS9381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKH|CCDS9381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	2	5	3	33	3	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923283	13	43051548	TA	T	600	PASS	-	-	-	-	-	Del	-	D	43051548	43051558	1	35	540.522	-	-	9	1	1	-	-	./.	0	0	0	0	27	6	27	6	0	0	./.	6	4	7	8	45	36	45	36	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923372	13	43350058	AC	A	420	PASS	-	-	-	-	-	Del	-	D	43350058	43350066	1	18	377.824	-	-	7	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	5	3	6	31	34	31	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923525	13	43830687	GA	G	360	PASS	ENOX1	CCDS9389.1	r.?	-	-	Del	intronic	D	43830687	43830697	1	15	325.397	-	-	9	1	1	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	2	4	2	4	23	14	23	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923553	13	43914446	TC	T	300	PASS	ENOX1	CCDS9389.1	r.?	-	-	Del	intronic	D	43914446	43914452	1	12	271.164	-	-	5	1	1	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	3	3	20	30	20	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923654	13	44228005	GA	G	360	PASS	ENOX1	CCDS9389.1	r.?	-	-	Del	intronic	D	44228005	44228015	1	15	323.591	-	-	9	1	1	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	4	2	36	22	36	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923660	13	44256750	CA	C	420	PASS	ENOX1	CCDS9389.1	r.?	-	-	Del	intronic	D	44256750	44256759	1	20	379.63	-	-	8	1	1	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	3	7	6	29	20	29	20	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923773	13	44532706	TCA	T	300	PASS	-	-	-	-	-	Del	-	D	44532706	44532723	2	12	271.164	-	-	8	1	-	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	4	24	24	24	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923906	13	45026781	GC	G	600	PASS	TSC22D1	CCDS31966.1	r.?	-	-	Del	intronic	D	45026781	45026789	1	35	541.124	-	-	7	1	1	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	4	6	5	7	29	19	29	19	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759923933	13	45112557	C	CA	420	PASS	TSC22D1	CCDS31966.1	r.?	-	-	Ins	intronic	I	45112557	45112566	1	20	375.415	-	-	8	1	1	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	3	5	4	28	23	28	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924018	13	45444308	CT	C	540	PASS	-	-	-	-	-	Del	-	D	45444308	45444316	1	28	488.095	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	3	8	5	31	27	31	27	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924046	13	45528479	TC	T	480	PASS	NUFIP1	CCDS9393.1	r.?	-	-	Del	intronic	D	45528479	45528487	1	25	432.056	-	-	7	1	1	NUFIP1|CCDS9393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUFIP1|CCDS9393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	4	7	6	22	34	22	34	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924061	13	45569478	CT	C	329	PASS	KIAA1704	CCDS9394.1	r.?	-	-	Del	intronic	D	45569478	45569488	1	15	325.397	-	-	9	1	1	KIAA1704|CCDS9394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1704|CCDS9394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	5	2	26	21	26	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924078	13	45611894	ATTTC	A	360	PASS	KIAA1704	CCDS9394.1	r.?	-	-	Del	downstream	D	45611894	45611904	4	15	325.397	-	-	2	1	1	KIAA1704|CCDS9394.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KIAA1704|CCDS9394.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	5	2	32	15	32	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924098	13	45653816	CTTA	C	329	PASS	-	-	-	-	-	Del	-	D	45653816	45653823	3	12	325.397	-	-	2	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	1	5	2	6	19	30	19	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924142	13	45750858	CT	C	360	PASS	GTF2F2	CCDS9395.1	r.?	-	-	Del	intronic	D	45750858	45750865	1	15	325.397	-	-	6	1	1	GTF2F2|CCDS9395.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTF2F2|CCDS9395.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	22	8	22	0	0	./.	4	2	6	3	24	25	24	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924535	13	47010516	CA	C	579	PASS	C13orf18	ENST00000409879	r.?	-	-	Del	intronic	D	47010516	47010525	1	49	650.794	-	-	8	1	1	C13orf18|ENST00000409879|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C13orf18|ENST00000409879|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	6	6	6	6	30	26	30	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924549	13	47058950	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	47058950	47058958	1	10	268.154	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	5	5	30	31	30	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924665	13	47315042	A	AC	480	PASS	LRCH1	CCDS31972.1	r.?	-	-	Ins	intronic	I	47315042	47315050	1	24	429.046	-	-	7	1	1	LRCH1|CCDS31972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRCH1|CCDS31972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	5	3	5	4	19	28	19	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924739	13	47532243	TA	T	360	PASS	-	-	-	-	-	Del	-	D	47532243	47532252	1	15	317.57	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	4	2	7	3	29	19	29	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924744	13	47542436	AT	A	300	PASS	-	-	-	-	-	Del	-	D	47542436	47542446	1	10	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	1	4	2	8	19	31	19	31	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924906	13	48098934	AT	A	300	PASS	-	-	-	-	-	Del	-	D	48098934	48098944	1	6	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	0	5	3	6	24	35	24	35	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759924992	13	48364920	GA	G	389	PASS	-	-	-	-	-	Del	-	D	48364920	48364927	1	20	379.028	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	6	5	27	30	27	30	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925036	13	48485606	CA	C	360	PASS	-	-	-	-	-	Del	-	D	48485606	48485614	1	16	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	3	3	6	3	22	20	22	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925047	13	48505995	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	48505995	48506005	1	10	265.746	-	-	9	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	4	1	4	3	33	25	33	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925270	13	49335683	GT	G	900	PASS	-	-	-	-	-	Del	-	D	49335683	49335691	1	72	808.676	-	-	7	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	7	8	8	10	30	24	30	24	8	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925276	13	49382504	TA	T	420	PASS	-	-	-	-	-	Del	-	D	49382504	49382512	1	18	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	5	2	5	5	24	12	24	12	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925355	13	49683045	TG	T	360	PASS	FNDC3A	CCDS9413.2	r.?	-	-	Del	upstream	D	49683045	49683050	1	12	325.397	-	-	4	1	1	FNDC3A|CCDS9413.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	FNDC3A|CCDS41886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	1	5	2	5	13	24	13	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925482	13	50056659	GT	G	360	PASS	SETDB2	CCDS9417.1	r.?	-	-	Del	intronic	D	50056659	50056669	1	15	325.397	-	-	9	1	1	SETDB2|CCDS9417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SETDB2|CCDS9417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	4	2	4	15	22	15	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925590	13	50263492	CT	C	418	PASS	EBPL	CCDS9420.1	r.?	-	-	Del	intronic	D	50263492	50263501	1	24	433.863	-	-	8	1	1	EBPL|CCDS9420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EBPL|CCDS9420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	3	7	4	27	21	27	21	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925718	13	50505307	ATTTTC	A	300	PASS	C13orf1	CCDS45046.1	r.?	-	-	Del	intronic	D	50505307	50505332	5	10	271.164	-	-	4	1	-	C13orf1|CCDS45046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C13orf1|CCDS45046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	1	4	1	5	15	26	15	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925819	13	50718569	CT	C	300	PASS	-	-	-	-	-	Del	-	D	50718569	50718577	1	10	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	2	6	12	29	12	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925947	13	51156815	CT	C	360	PASS	-	-	-	-	-	Del	-	D	51156815	51156824	1	15	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	6	3	27	22	27	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759925973	13	51266917	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	51266917	51266925	1	10	268.154	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	1	4	2	5	28	19	29	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926023	13	51427913	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	51427913	51427923	1	10	266.95	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	18	0	0	./.	4	1	6	2	28	13	29	13	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926054	13	51543779	AC	A	300	PASS	RNASEH2B	CCDS45047.1	r.?	-	-	Del	intronic	D	51543779	51543784	1	10	271.164	-	-	4	1	1	RNASEH2B|CCDS45047.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNASEH2B|CCDS45047.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	3	14	3	0	0	./.	4	1	5	2	30	19	30	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926393	13	52991503	C	CT	600	PASS	VPS36	CCDS9434.1	r.?	-	-	Ins	intronic	I	52991503	52991513	1	32	533.297	-	-	9	1	1	VPS36|CCDS9434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS36|CCDS9434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	11	0	0	./.	3	7	3	11	26	34	27	34	3	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926406	13	53037613	TA	T	480	PASS	CKAP2	CCDS9435.1	r.?	-	-	Del	intronic	D	53037613	53037621	1	24	433.863	-	-	7	1	1	CKAP2|CCDS9435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CKAP2|CCDS9435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	5	3	6	33	19	33	19	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926534	13	53430937	GA	G	480	PASS	-	-	-	-	-	Del	-	D	53430937	53430947	1	24	428.444	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	5	3	6	22	31	22	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926537	13	53440477	GA	G	329	PASS	-	-	-	-	-	Del	-	D	53440477	53440487	1	16	320.58	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	4	5	33	29	33	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926590	13	53580651	TC	T	300	PASS	-	-	-	-	-	Del	-	D	53580651	53580653	1	12	271.164	-	-	1	1	-	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	3	3	25	37	25	37	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926598	13	53618615	AT	A	420	PASS	OLFM4	CCDS9440.1	r.?	-	-	Del	intronic	D	53618615	53618622	1	20	375.415	-	-	6	1	1	OLFM4|CCDS9440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OLFM4|CCDS9440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	3	5	3	33	32	33	32	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926638	13	53898549	GT	G	480	PASS	-	-	-	-	-	Del	-	D	53898549	53898555	1	21	433.863	-	-	5	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	6	2	8	3	36	27	36	27	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926677	13	54074840	CT	C	360	PASS	-	-	-	-	-	Del	-	D	54074840	54074849	1	16	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	4	3	31	20	31	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759926760	13	54452163	CT	C	420	PASS	-	-	-	-	-	Del	-	D	54452163	54452172	1	18	378.426	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	2	6	4	20	28	20	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927006	13	55342072	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	55342072	55342082	1	18	365.782	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	2	6	2	33	35	33	35	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927012	13	55380548	CT	C	300	PASS	-	-	-	-	-	Del	-	D	55380548	55380557	1	10	269.96	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	4	1	7	8	35	8	35	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927026	13	55437027	GA	G	540	PASS	-	-	-	-	-	Del	-	D	55437027	55437029	1	30	488.095	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	5	6	6	34	32	34	32	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927045	13	55512069	CGTT	C	298	PASS	-	-	-	-	-	Del	-	D	55512069	55512075	3	15	325.397	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	2	4	3	32	22	32	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927064	13	55554835	AT	A	300	PASS	-	-	-	-	-	Del	-	D	55554835	55554844	1	12	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	2	3	2	4	13	17	13	17	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927238	13	55992698	GA	G	360	PASS	-	-	-	-	-	Del	-	D	55992698	55992708	1	15	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	3	6	15	29	15	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927257	13	56054000	GT	G	300	PASS	-	-	-	-	-	Del	-	D	56054000	56054009	1	10	269.358	-	-	8	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	1	4	1	5	8	32	8	32	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927353	13	56367725	CT	C	300	PASS	-	-	-	-	-	Del	-	D	56367725	56367735	1	6	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	5	0	6	2	21	12	21	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927477	13	56916771	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	56916771	56916779	1	16	321.785	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	4	4	31	32	32	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927497	13	56981747	CA	C	300	PASS	-	-	-	-	-	Del	-	D	56981747	56981753	1	12	271.164	-	-	5	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	2	3	3	12	18	12	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927641	13	57855833	GA	G	480	PASS	-	-	-	-	-	Del	-	D	57855833	57855839	1	24	433.863	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	5	3	6	4	31	24	31	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927822	13	58573331	CT	C	300	PASS	-	-	-	-	-	Del	-	D	58573331	58573339	1	10	268.756	-	-	7	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	1	4	1	4	32	32	32	32	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927931	13	59064704	AT	A	269	PASS	-	-	-	-	-	Del	-	D	59064704	59064713	1	12	269.96	-	-	8	1	1	-	-	./.	0	0	0	0	25	9	25	9	0	0	./.	3	2	5	3	25	17	25	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759927982	13	59158817	TC	T	540	PASS	-	-	-	-	-	Del	-	D	59158817	59158822	1	24	488.095	-	-	4	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	7	2	10	2	31	6	31	6	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928047	13	59309681	TA	T	540	PASS	-	-	-	-	-	Del	-	D	59309681	59309688	1	28	488.095	-	-	6	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	3	8	4	32	25	32	25	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928049	13	59325961	AT	A	300	PASS	-	-	-	-	-	Del	-	D	59325961	59325970	1	12	269.96	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	3	2	23	24	23	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928220	13	59916686	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	59916686	59916696	1	16	321.785	-	-	9	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	3	7	3	25	22	25	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928265	13	60021256	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	60021256	60021264	1	10	268.154	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	4	3	6	14	26	14	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928394	13	60365876	TC	T	420	PASS	DIAPH3	CCDS41898.1	r.?	-	-	Del	intronic	D	60365876	60365881	1	14	379.63	-	-	4	1	1	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	1	7	1	25	18	25	18	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928438	13	60548324	G	GA	300	PASS	DIAPH3	CCDS41898.1	r.?	-	-	Ins	intronic	I	60548324	60548332	1	12	268.154	-	-	7	1	1	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	2	3	14	21	14	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928471	13	60747597	GTCC	G	300	PASS	-	-	-	-	-	Del	-	D	60747597	60747606	3	12	271.164	-	-	2	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	4	11	11	11	11	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928640	13	61266080	TA	T	269	PASS	-	-	-	-	-	Del	-	D	61266080	61266089	1	10	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	1	6	2	27	30	27	30	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928816	13	61754549	CA	C	600	PASS	-	-	-	-	-	Del	-	D	61754549	61754558	1	35	542.328	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	6	8	9	31	34	31	34	8	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928933	13	62153347	GT	G	300	PASS	-	-	-	-	-	Del	-	D	62153347	62153355	1	6	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	0	5	0	20	0	20	0	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759928996	13	62382452	GA	G	396	PASS	-	-	-	-	-	Del	-	D	62382452	62382462	1	20	379.63	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	4	3	5	32	22	32	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759929280	13	63540799	CT	C	300	PASS	-	-	-	-	-	Del	-	D	63540799	63540809	1	12	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	3	3	8	16	8	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759929917	13	65060249	CA	C	420	PASS	-	-	-	-	-	Del	-	D	65060249	65060257	1	20	378.426	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	4	3	5	4	17	42	17	42	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759929944	13	65239780	GA	G	300	PASS	-	-	-	-	-	Del	-	D	65239780	65239790	1	10	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	1	4	1	7	24	27	24	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930169	13	66162493	CA	C	312	PASS	-	-	-	-	-	Del	-	D	66162493	66162501	1	18	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	5	5	7	29	20	29	20	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930220	13	66335471	CA	C	360	PASS	-	-	-	-	-	Del	-	D	66335471	66335480	1	12	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	1	5	1	19	11	19	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930334	13	66763541	TA	T	540	PASS	-	-	-	-	-	Del	-	D	66763541	66763549	1	30	485.085	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	4	5	4	31	27	31	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930338	13	66769580	AT	A	329	PASS	-	-	-	-	-	Del	-	D	66769580	66769588	1	16	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	4	3	21	18	21	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930351	13	66795546	TA	T	360	PASS	-	-	-	-	-	Del	-	D	66795546	66795554	1	16	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	3	4	17	17	17	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930530	13	67440209	GA	G	420	PASS	PCDH9	CCDS9443.1	r.?	-	-	Del	intronic	D	67440209	67440217	1	20	379.63	-	-	7	1	1	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	3	5	3	27	26	27	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930534	13	67457780	TA	T	300	PASS	PCDH9	CCDS9443.1	r.?	-	-	Del	intronic	D	67457780	67457788	1	10	271.164	-	-	7	1	1	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	4	1	4	1	21	25	21	25	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930581	13	67597366	CA	C	360	PASS	PCDH9	CCDS9443.1	r.?	-	-	Del	intronic	D	67597366	67597372	1	15	325.397	-	-	5	1	1	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	2	6	2	36	14	36	14	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930674	13	67924977	GT	G	298	PASS	-	-	-	-	-	Del	-	D	67924977	67924985	1	15	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	2	4	4	8	33	25	33	25	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930685	13	67960228	GT	G	420	PASS	-	-	-	-	-	Del	-	D	67960228	67960231	1	18	379.63	-	-	2	1	1	-	-	./.	0	0	0	0	2	11	2	11	0	0	./.	5	2	6	3	28	28	28	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930691	13	67995505	GA	G	300	PASS	-	-	-	-	-	Del	-	D	67995505	67995514	1	12	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	3	22	14	22	14	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930762	13	68204165	GT	G	300	PASS	-	-	-	-	-	Del	-	D	68204165	68204175	1	12	270.562	-	-	9	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	3	2	3	2	20	25	20	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930767	13	68241536	CT	C	420	PASS	-	-	-	-	-	Del	-	D	68241536	68241546	1	18	379.63	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	5	2	5	25	25	25	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930855	13	68700152	AT	A	420	PASS	-	-	-	-	-	Del	-	D	68700152	68700161	1	8	378.426	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	7	0	8	0	26	7	26	7	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759930921	13	68989089	AT	A	300	PASS	-	-	-	-	-	Del	-	D	68989089	68989099	1	6	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	0	8	1	27	25	27	25	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931047	13	69484870	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	69484870	69484879	1	15	321.785	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	4	4	4	25	14	25	14	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931051	13	69502127	TAC	T	480	PASS	-	-	-	-	-	Del	-	D	69502127	69502131	2	25	433.863	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	4	5	5	20	19	20	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931345	13	70414364	AT	A	300	PASS	KLHL1	CCDS9445.1	r.?	-	-	Del	intronic	D	70414364	70414374	1	10	271.164	-	-	9	1	1	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	4	1	5	1	26	12	26	12	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931424	13	70607592	GT	G	300	PASS	KLHL1	CCDS9445.1	r.?	-	-	Del	intronic	D	70607592	70607600	1	10	271.164	-	-	7	1	1	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	4	3	14	15	14	15	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931707	13	71336128	A	AT	284	PASS	-	-	-	-	-	Ins	-	I	71336128	71336137	1	24	420.617	-	-	8	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	5	3	6	3	30	22	30	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931809	13	71645926	AT	A	360	PASS	-	-	-	-	-	Del	-	D	71645926	71645934	1	15	325.397	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	4	2	5	3	22	14	22	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931890	13	71923442	TA	T	420	PASS	-	-	-	-	-	Del	-	D	71923442	71923452	1	20	378.426	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	4	3	5	12	21	12	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931900	13	71958148	CT	C	480	PASS	-	-	-	-	-	Del	-	D	71958148	71958157	1	24	433.261	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	5	4	5	28	20	28	20	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759931952	13	72146839	AT	A	300	PASS	DACH1	ENST00000305425	r.?	-	-	Del	intronic	D	72146839	72146848	1	10	271.164	-	-	8	1	1	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	4	1	4	1	27	10	27	10	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932092	13	72693710	AT	A	420	PASS	-	-	-	-	-	Del	-	D	72693710	72693720	1	14	379.63	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	1	6	1	24	14	24	14	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932113	13	72750490	AT	A	300	PASS	-	-	-	-	-	Del	-	D	72750490	72750500	1	12	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	3	3	9	26	9	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932154	13	72932354	TG	T	360	PASS	-	-	-	-	-	Del	-	D	72932354	72932356	1	12	325.397	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	1	5	1	10	23	40	23	40	1	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932390	13	73551000	A	AT	300	PASS	PIBF1	CCDS31991.1	r.?	-	-	Ins	intronic	I	73551000	73551010	1	12	268.154	-	-	9	1	1	PIBF1|CCDS31991.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIBF1|CCDS31991.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	5	3	23	19	23	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932530	13	73828064	TA	T	300	PASS	-	-	-	-	-	Del	-	D	73828064	73828074	1	12	261.531	-	-	9	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	3	4	4	28	24	28	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932594	13	73973808	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	73973808	73973814	1	42	589.938	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	6	6	7	29	28	29	29	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932629	13	74095988	CA	C	420	PASS	-	-	-	-	-	Del	-	D	74095988	74095994	1	20	379.028	-	-	5	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	3	5	3	34	16	34	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932643	13	74156135	CA	C	300	PASS	-	-	-	-	-	Del	-	D	74156135	74156144	1	12	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	22	6	22	6	0	0	./.	2	3	5	5	42	22	42	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932692	13	74351965	CT	C	360	PASS	KLF12	CCDS9449.1	r.?	-	-	Del	intronic	D	74351965	74351974	1	16	324.795	-	-	8	1	1	KLF12|CCDS9449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLF12|CCDS9449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	4	5	26	24	26	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932836	13	74714503	TA	T	329	PASS	-	-	-	-	-	Del	-	D	74714503	74714513	1	7	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	6	0	9	0	29	8	29	8	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932948	13	75024259	GT	G	540	PASS	-	-	-	-	-	Del	-	D	75024259	75024267	1	28	488.095	-	-	7	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	3	8	4	36	28	36	28	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759932983	13	75136410	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	75136410	75136415	1	12	315.764	-	-	4	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	5	1	5	1	32	21	32	22	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933005	13	75222219	CT	C	360	PASS	-	-	-	-	-	Del	-	D	75222219	75222229	1	16	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	4	6	36	33	36	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933038	13	75336574	CA	C	300	PASS	-	-	-	-	-	Del	-	D	75336574	75336582	1	10	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	1	5	2	22	24	22	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933146	13	75626819	TA	T	329	PASS	-	-	-	-	-	Del	-	D	75626819	75626829	1	12	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	5	1	5	17	30	17	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933286	13	76070354	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	76070354	76070358	2	12	271.164	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	2	3	3	4	19	25	19	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933373	13	76294305	AT	A	420	PASS	LMO7	CCDS9454.1	r.?	-	-	Del	intronic	D	76294305	76294312	1	20	378.426	-	-	6	1	1	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	4	3	5	3	19	22	19	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933390	13	76353805	G	GTA	300	PASS	LMO7	CCDS9454.1	r.?	-	-	Ins	intronic	I	76353805	76353815	2	12	265.143	-	-	4	1	1	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	15	3	15	0	0	./.	2	3	3	4	28	27	28	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933420	13	76430508	CT	C	360	PASS	LMO7	CCDS9454.1	r.?	-	-	Del	intronic	D	76430508	76430518	1	15	325.397	-	-	9	1	1	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	2	5	2	24	28	24	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933514	13	76685305	A	AT	412	PASS	-	-	-	-	-	Ins	-	I	76685305	76685312	1	20	375.415	-	-	6	1	1	-	-	./.	0	0	0	0	15	8	15	9	0	0	./.	3	4	4	6	22	33	22	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933566	13	76828588	CT	C	360	PASS	-	-	-	-	-	Del	-	D	76828588	76828598	1	15	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	2	4	2	6	28	31	28	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933853	13	77969718	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	77969718	77969722	1	10	268.154	-	-	3	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	1	4	1	5	8	31	8	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759933914	13	78265886	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	78265886	78265895	1	21	429.046	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	2	6	3	35	21	35	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934132	13	79071767	CT	C	480	PASS	-	-	-	-	-	Del	-	D	79071767	79071775	1	25	431.454	-	-	7	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	4	4	7	5	34	28	34	28	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934215	13	79360270	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	79360270	79360278	1	42	588.734	-	-	7	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	6	5	9	7	31	40	31	40	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934408	13	79999730	CT	C	300	PASS	-	-	-	-	-	Del	-	D	79999730	79999739	1	12	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	3	2	3	2	16	15	16	15	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934437	13	80093917	AT	A	420	PASS	NDFIP2	CCDS31998.1	r.?	-	-	Del	intronic	D	80093917	80093925	1	8	379.63	-	-	7	1	1	NDFIP2|CCDS31998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDFIP2|CCDS31998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	7	0	8	1	35	17	35	17	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934446	13	80142026	AT	A	300	PASS	-	-	-	-	-	Del	-	D	80142026	80142036	1	10	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	1	4	1	18	23	18	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934494	13	80354716	AT	A	420	PASS	-	-	-	-	-	Del	-	D	80354716	80354724	1	20	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	3	4	4	5	33	35	33	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934543	13	80551678	T	TA	294	PASS	-	-	-	-	-	Ins	-	I	80551678	80551687	1	10	268.154	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	1	4	3	6	25	36	25	36	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934662	13	80900766	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	80900766	80900772	1	30	482.075	-	-	5	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	4	5	6	6	31	26	31	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934682	13	80948337	CA	C	600	PASS	-	-	-	-	-	Del	-	D	80948337	80948346	1	32	542.328	-	-	8	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	7	3	7	3	27	15	27	15	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934700	13	81019535	TC	T	300	PASS	-	-	-	-	-	Del	-	D	81019535	81019543	1	12	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	2	3	4	4	27	26	27	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934718	13	81062773	GA	G	480	PASS	-	-	-	-	-	Del	-	D	81062773	81062781	1	24	433.863	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	5	3	5	31	24	31	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934785	13	81267520	GA	G	540	PASS	-	-	-	-	-	Del	-	D	81267520	81267525	1	24	488.095	-	-	4	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	2	7	5	7	34	31	34	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934786	13	81267695	TA	T	600	PASS	-	-	-	-	-	Del	-	D	81267695	81267701	1	36	538.716	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	5	5	5	26	31	26	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934826	13	81384151	AT	A	300	PASS	-	-	-	-	-	Del	-	D	81384151	81384158	1	12	271.164	-	-	6	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	2	4	20	15	20	15	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934889	13	81670244	GT	G	300	PASS	-	-	-	-	-	Del	-	D	81670244	81670251	1	12	271.164	-	-	6	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	3	6	21	18	21	18	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934931	13	81858151	CT	C	540	PASS	-	-	-	-	-	Del	-	D	81858151	81858161	1	30	488.095	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	4	5	5	28	27	28	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759934934	13	81896721	CT	C	360	PASS	-	-	-	-	-	Del	-	D	81896721	81896730	1	12	324.795	-	-	8	1	1	-	-	./.	0	0	0	0	19	5	19	5	0	0	./.	1	5	1	5	27	28	27	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935015	13	82273167	GT	G	360	PASS	-	-	-	-	-	Del	-	D	82273167	82273176	1	15	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	2	5	4	23	28	23	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935054	13	82399501	TA	T	300	PASS	-	-	-	-	-	Del	-	D	82399501	82399511	1	10	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	4	1	5	3	23	35	23	35	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935077	13	82486407	TA	T	360	PASS	-	-	-	-	-	Del	-	D	82486407	82486417	1	15	317.57	-	-	9	1	1	-	-	./.	0	0	0	0	14	26	14	26	0	0	./.	4	2	4	3	23	21	23	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935126	13	82810717	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	82810717	82810724	1	21	429.046	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	6	2	8	18	33	18	33	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935128	13	82815269	GAAGA	G	329	PASS	-	-	-	-	-	Del	-	D	82815269	82815278	4	15	324.193	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	4	2	4	7	23	7	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935130	13	82818231	TA	T	300	PASS	-	-	-	-	-	Del	-	D	82818231	82818240	1	12	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	2	3	2	3	15	29	15	29	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935146	13	82908997	GT	G	420	PASS	-	-	-	-	-	Del	-	D	82908997	82909007	1	14	379.63	-	-	9	1	1	-	-	./.	0	0	0	0	13	26	13	26	0	0	./.	6	1	8	1	29	4	29	4	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935157	13	82964851	CT	C	300	PASS	-	-	-	-	-	Del	-	D	82964851	82964861	1	10	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	1	4	1	4	14	29	14	29	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935216	13	83177877	CT	C	300	PASS	-	-	-	-	-	Del	-	D	83177877	83177883	1	12	271.164	-	-	5	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	2	4	4	28	4	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935392	13	83965405	CT	C	300	PASS	-	-	-	-	-	Del	-	D	83965405	83965413	1	6	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	0	5	0	5	2	28	2	28	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935646	13	85127527	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	85127527	85127536	1	12	268.154	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	13	9	0	0	./.	3	2	4	2	21	24	22	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935832	13	85741046	CA	C	269	PASS	-	-	-	-	-	Del	-	D	85741046	85741054	1	12	271.164	-	-	7	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	5	2	36	21	36	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935834	13	85768008	CA	C	337	PASS	-	-	-	-	-	Del	-	D	85768008	85768017	1	16	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	3	3	3	4	22	27	22	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935835	13	85783616	GTC	G	420	PASS	-	-	-	-	-	Del	-	D	85783616	85783627	2	18	379.63	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	2	5	4	20	31	20	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935869	13	85864165	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	85864165	85864173	1	12	266.95	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	5	4	32	18	32	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759935906	13	85918421	AT	A	538	PASS	-	-	-	-	-	Del	-	D	85918421	85918430	1	32	542.328	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	7	4	8	24	28	24	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936107	13	86521377	CT	C	420	PASS	-	-	-	-	-	Del	-	D	86521377	86521386	1	20	379.63	-	-	8	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	3	4	4	5	19	29	19	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936248	13	87599005	TA	T	300	PASS	-	-	-	-	-	Del	-	D	87599005	87599015	1	12	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	3	4	31	19	31	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936284	13	87798854	AG	A	540	PASS	-	-	-	-	-	Del	-	D	87798854	87798861	1	24	487.493	-	-	6	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	7	2	10	31	39	31	39	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936342	13	88088167	AT	A	300	PASS	-	-	-	-	-	Del	-	D	88088167	88088176	1	10	271.164	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	1	5	1	15	7	15	7	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936379	13	88229274	CT	C	300	PASS	-	-	-	-	-	Del	-	D	88229274	88229284	1	12	268.756	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	4	3	19	30	19	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936434	13	88493712	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	88493712	88493721	1	6	268.154	-	-	8	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	0	5	0	8	26	29	26	29	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936556	13	88979100	CCTT	C	420	PASS	-	-	-	-	-	Del	-	D	88979100	88979106	3	14	379.63	-	-	1	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	1	6	1	25	5	25	5	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936734	13	89511634	GT	G	360	PASS	-	-	-	-	-	Del	-	D	89511634	89511644	1	15	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	2	5	18	28	18	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936805	13	89849573	GT	G	540	PASS	-	-	-	-	-	Del	-	D	89849573	89849580	1	28	488.095	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	6	5	6	36	28	36	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759936866	13	89995095	CT	C	420	PASS	-	-	-	-	-	Del	-	D	89995095	89995103	1	20	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	4	3	5	20	39	20	39	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937299	13	91299215	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	91299215	91299227	2	12	270.562	-	-	5	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	3	13	21	13	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937431	13	91783048	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	91783048	91783057	1	16	321.785	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	5	3	31	27	31	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937468	13	91965290	CAA	C	420	PASS	-	-	-	-	-	Del	-	D	91965290	91965300	2	18	379.028	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	2	5	2	23	3	23	3	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937471	13	91979376	CA	C	420	PASS	-	-	-	-	-	Del	-	D	91979376	91979384	1	14	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	6	1	7	1	31	23	31	23	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937626	13	92601146	G	GT	360	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	92601146	92601153	1	15	319.376	-	-	6	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	18	0	0	./.	2	4	5	5	24	20	24	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937662	13	92709543	C	CA	360	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	92709543	92709551	1	15	321.785	-	-	7	1	-	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	3	4	27	31	27	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937680	13	92755421	GT	G	300	PASS	GPC5	CCDS9468.1	r.?	-	-	Del	intronic	D	92755421	92755430	1	10	271.164	-	-	8	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	2	8	15	29	15	29	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937727	13	92896500	C	CA	420	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	92896500	92896502	1	20	374.211	-	-	1	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	16	9	0	0	./.	4	3	5	4	30	25	30	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937765	13	93044335	C	CA	360	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	93044335	93044342	1	12	321.785	-	-	6	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	5	1	6	2	32	16	32	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759937914	13	93609819	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	93609819	93609828	1	10	268.154	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	15	0	0	./.	4	1	6	2	34	41	35	41	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938086	13	94059646	TA	T	360	PASS	GPC6	CCDS9469.1	r.?	-	-	Del	intronic	D	94059646	94059656	1	16	325.397	-	-	9	1	1	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	4	3	37	15	37	15	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938095	13	94089206	AT	A	300	PASS	GPC6	CCDS9469.1	r.?	-	-	Del	intronic	D	94089206	94089216	1	12	271.164	-	-	9	1	1	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	7	2	25	25	25	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938230	13	94535694	AT	A	339	PASS	GPC6	CCDS9469.1	r.?	-	-	Del	intronic	D	94535694	94535703	1	21	433.863	-	-	8	1	1	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	2	6	3	6	19	20	19	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938457	13	95357132	TG	T	360	PASS	SOX21	CCDS9473.1	r.?	-	-	Del	downstream	D	95357132	95357141	1	15	320.58	-	-	8	1	1	SOX21|CCDS9473.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL137061.2|ENST00000513062|r.2256delC|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	4	4	18	23	18	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938463	13	95359965	AC	A	420	PASS	SOX21	CCDS9473.1	r.?	-	-	Del	downstream	D	95359965	95359971	1	18	379.63	-	-	5	1	1	SOX21|CCDS9473.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL137061.2|ENST00000513062|r.785delG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	8	10	8	10	0	0	./.	2	5	2	6	24	21	24	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938525	13	95536925	TA	T	300	PASS	AL139381.2	ENST00000505287	r.?	-	-	Del	intronic	D	95536925	95536935	1	10	271.164	-	-	9	1	1	AL139381.2|ENST00000505287|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL139381.2|ENST00000505287|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	1	4	1	6	19	32	19	32	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938869	13	96109518	T	TA	300	PASS	CLDN10	CCDS9475.1	r.?	-	-	Ins	intronic	I	96109518	96109528	1	12	268.154	-	-	9	1	1	CLDN10|CCDS9475.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLDN10|CCDS9475.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	3	29	29	29	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759938909	13	96229381	C	CA	420	PASS	DZIP1	CCDS9478.1	r.?	-	-	Ins	downstream	I	96229381	96229389	1	18	374.813	-	-	7	1	1	DZIP1|CCDS9478.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CLDN10|CCDS9475.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	2	5	3	17	25	17	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939010	13	96580469	G	GC	300	PASS	UGGT2	CCDS9480.1	r.?	-	-	Ins	intronic	I	96580469	96580476	1	10	266.95	-	-	6	1	1	UGGT2|CCDS9480.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UGGT2|CCDS9480.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	1	4	2	4	25	27	26	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939049	13	96743195	TC	T	389	PASS	HS6ST3	CCDS9481.1	r.104delC	c.80delC	p.S29fs*103	Del	frameshift	D	96743195	96743201	1	20	376.017	-	-	5	1	1	HS6ST3|CCDS9481.1|r.104delC|c.80delC|p.S29fs*103|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HS6ST3|CCDS9481.1|r.104delC|c.80delC|p.S29fs*103|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	14	9	14	0	0	./.	4	3	5	3	29	27	29	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939183	13	97219499	C	CA	420	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Ins	intronic	I	97219499	97219505	1	8	375.415	-	-	5	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	0	7	0	8	12	19	12	19	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939254	13	97610534	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	97610534	97610544	1	12	320.58	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	10	0	0	./.	1	5	3	6	17	26	17	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939360	13	98098522	C	CT	420	PASS	RAP2A	CCDS9485.1	r.?	-	-	Ins	intronic	I	98098522	98098532	1	18	375.415	-	-	9	1	1	RAP2A|CCDS9485.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAP2A|CCDS9485.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	6	4	33	32	33	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939520	13	98636876	GA	G	269	PASS	IPO5	CCDS31999.1	r.?	-	-	Del	intronic	D	98636876	98636881	1	12	271.164	-	-	4	1	1	IPO5|CCDS31999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IPO5|CCDS31999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	4	4	27	13	27	13	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939539	13	98689217	CA	C	540	PASS	-	-	-	-	-	Del	-	D	98689217	98689227	1	24	487.493	-	-	9	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	7	6	8	25	22	25	22	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939585	13	98785642	TA	T	360	PASS	-	-	-	-	-	Del	-	D	98785642	98785651	1	15	325.397	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	2	5	3	20	14	20	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939629	13	98889864	AT	A	360	PASS	FARP1	CCDS9487.1	r.?	-	-	Del	intronic	D	98889864	98889871	1	15	325.397	-	-	6	1	1	FARP1|CCDS9487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARP1|CCDS9487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	2	4	2	22	28	22	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939743	13	99135651	GA	G	600	PASS	STK24	CCDS32001.1	r.?	-	-	Del	intronic	D	99135651	99135661	1	35	542.328	-	-	9	1	1	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	6	4	7	9	31	29	31	29	7	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939760	13	99167768	TG	T	480	PASS	STK24	CCDS32001.1	r.?	-	-	Del	intronic	D	99167768	99167776	1	16	430.852	-	-	7	1	1	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	7	1	8	2	29	29	29	29	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939777	13	99259566	AT	A	360	PASS	-	-	-	-	-	Del	-	D	99259566	99259574	1	15	324.193	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	17	0	0	./.	2	4	3	4	18	32	18	32	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939788	13	99280992	TA	T	360	PASS	-	-	-	-	-	Del	-	D	99280992	99281002	1	12	324.193	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	1	5	1	8	12	20	12	20	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759939846	13	99399842	CA	C	360	PASS	SLC15A1	CCDS9489.1	r.?	-	-	Del	intronic	D	99399842	99399850	1	12	325.397	-	-	7	1	1	SLC15A1|CCDS9489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC15A1|CCDS9489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	4	7	26	25	26	25	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940086	13	100104995	A	AT	551	PASS	-	-	-	-	-	Ins	-	I	100104995	100105002	1	35	529.083	-	-	6	1	1	-	-	./.	0	0	0	0	8	17	8	18	0	0	./.	4	6	7	8	26	27	26	27	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940151	13	100248990	TG	T	420	PASS	-	-	-	-	-	Del	-	D	100248990	100248992	1	18	379.028	-	-	1	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	5	3	5	23	26	23	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940290	13	100600776	CA	C	480	PASS	-	-	-	-	-	Del	-	D	100600776	100600786	1	24	433.863	-	-	9	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	3	6	3	35	20	35	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940292	13	100605855	AGAG	A	389	PASS	-	-	-	-	-	Del	-	D	100605855	100605864	3	20	379.028	-	-	2	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	4	3	4	18	25	18	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940371	13	100765005	A	AT	360	PASS	PCCA	CCDS9496.2	r.?	-	-	Ins	intronic	I	100765005	100765011	1	16	319.978	-	-	5	1	1	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	3	3	4	7	28	33	29	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940458	13	101014185	AG	A	360	PASS	PCCA	CCDS9496.2	r.?	-	-	Del	intronic	D	101014185	101014187	1	16	325.397	-	-	1	1	1	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	6	5	35	29	35	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940460	13	101017144	TA	T	300	PASS	PCCA	CCDS9496.2	r.?	-	-	Del	intronic	D	101017144	101017154	1	12	271.164	-	-	9	1	1	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCCA|CCDS9496.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	4	2	27	22	27	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940589	13	101476362	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	101476362	101476372	1	20	374.211	-	-	9	1	1	-	-	./.	0	0	0	0	22	9	23	9	0	0	./.	3	4	5	4	27	21	27	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940817	13	102187594	C	CA	420	PASS	ITGBL1	CCDS9499.1	r.?	-	-	Ins	intronic	I	102187594	102187603	1	18	375.415	-	-	8	1	1	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	2	5	3	6	21	27	21	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940825	13	102220344	GA	G	420	PASS	ITGBL1	CCDS9499.1	r.?	-	-	Del	intronic	D	102220344	102220353	1	14	378.426	-	-	8	1	1	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	6	1	7	13	39	13	39	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940971	13	102629684	GA	G	420	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102629684	102629694	1	20	371.201	-	-	9	1	1	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	4	3	7	4	34	12	34	12	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759940978	13	102669421	GT	G	300	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102669421	102669430	1	10	271.164	-	-	8	1	1	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	1	4	1	4	19	23	19	23	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941227	13	103456670	C	CT	300	PASS	BIVM	CCDS9505.1	r.?	-	-	Ins	intronic	I	103456670	103456679	1	12	265.143	-	-	8	1	1	BIVM|CCDS9505.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BIVM|CCDS9505.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	3	5	25	24	25	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941229	13	103468396	A	AT	300	PASS	BIVM	CCDS9505.1	r.?	-	-	Ins	intronic	I	103468396	103468404	1	12	268.154	-	-	7	1	1	BIVM|CCDS9505.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BIVM|CCDS9505.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	4	2	13	31	13	31	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941249	13	103544049	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	103544049	103544059	1	7	313.958	-	-	9	1	-	-	-	./.	0	0	0	0	11	23	12	23	0	0	./.	6	0	7	0	27	32	29	32	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941311	13	103703785	GA	G	300	PASS	SLC10A2	CCDS9506.1	r.1183-4delu	c.586-4delt	p.?	Del	splice region	D	103703785	103703795	1	10	269.96	-	-	9	1	1	SLC10A2|CCDS9506.1|r.1183-4delu|c.586-4delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	SLC10A2|CCDS9506.1|r.1183-4delu|c.586-4delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	23	9	23	9	0	0	./.	1	4	2	4	25	20	25	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941633	13	104912326	TA	T	449	PASS	-	-	-	-	-	Del	-	D	104912326	104912335	1	24	433.863	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	5	7	6	27	19	27	19	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941666	13	105036629	CT	C	300	PASS	-	-	-	-	-	Del	-	D	105036629	105036639	1	12	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	3	5	16	23	16	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941949	13	105893346	GA	G	420	PASS	-	-	-	-	-	Del	-	D	105893346	105893356	1	18	379.63	-	-	9	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	2	5	4	7	15	26	15	26	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759941997	13	106103096	CT	C	480	PASS	-	-	-	-	-	Del	-	D	106103096	106103104	1	24	433.863	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	5	4	9	24	35	24	35	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942175	13	106647520	TTTG	T	569	PASS	-	-	-	-	-	Del	-	D	106647520	106647528	3	35	542.328	-	-	2	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	6	4	6	24	33	24	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942244	13	106780287	AC	A	420	PASS	-	-	-	-	-	Del	-	D	106780287	106780289	1	20	379.63	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	3	4	3	23	27	23	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942390	13	107191101	CA	C	300	PASS	EFNB2	CCDS9507.1	r.?	-	-	Del	upstream	D	107191101	107191110	1	10	269.96	-	-	8	1	1	EFNB2|CCDS9507.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EFNB2|CCDS9507.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	4	2	22	20	22	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942398	13	107200526	CA	C	300	PASS	ARGLU1	CCDS41906.1	r.?	-	-	Del	intronic	D	107200526	107200536	1	12	271.164	-	-	9	1	1	ARGLU1|CCDS41906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARGLU1|CCDS41906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	3	2	22	19	22	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942452	13	107394304	GA	G	420	PASS	-	-	-	-	-	Del	-	D	107394304	107394313	1	18	379.63	-	-	8	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	2	5	2	8	20	35	20	35	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942573	13	107721119	TA	T	300	PASS	-	-	-	-	-	Del	-	D	107721119	107721128	1	12	270.562	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	3	3	19	15	19	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942590	13	107819029	GT	G	480	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	downstream	D	107819029	107819037	1	21	433.863	-	-	7	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	13	8	13	0	0	./.	2	6	4	7	30	44	30	44	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942628	13	107919890	T	TA	300	PASS	FAM155A	CCDS32006.1	r.?	-	-	Ins	intronic	I	107919890	107919899	1	12	268.154	-	-	8	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	7	24	7	0	0	./.	2	3	2	4	17	27	17	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942653	13	107996263	GT	G	360	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	intronic	D	107996263	107996273	1	15	325.397	-	-	9	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	6	5	21	25	21	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942789	13	108388268	AT	A	480	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	intronic	D	108388268	108388276	1	24	433.863	-	-	7	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	5	3	6	26	39	26	39	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942939	13	108915470	AT	A	300	PASS	-	-	-	-	-	Del	-	D	108915470	108915480	1	10	271.164	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	1	5	8	30	8	30	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759942974	13	109014857	TA	T	360	PASS	-	-	-	-	-	Del	-	D	109014857	109014864	1	12	325.397	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	1	5	1	21	17	21	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943018	13	109186329	AT	A	420	PASS	-	-	-	-	-	Del	-	D	109186329	109186338	1	20	379.028	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	6	4	22	11	22	11	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943091	13	109380731	A	AT	300	PASS	MYO16	CCDS32008.1	r.?	-	-	Ins	intronic	I	109380731	109380738	1	6	266.95	-	-	6	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	5	0	7	0	32	4	32	5	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943319	13	110086397	GA	G	360	PASS	-	-	-	-	-	Del	-	D	110086397	110086407	1	15	325.397	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	4	2	4	10	11	10	11	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943355	13	110202062	CT	C	329	PASS	-	-	-	-	-	Del	-	D	110202062	110202072	1	12	324.795	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	5	1	8	26	28	26	28	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943389	13	110308300	TC	T	300	PASS	-	-	-	-	-	Del	-	D	110308300	110308307	1	12	271.164	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	7	3	22	23	22	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943525	13	110726212	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	110726212	110726219	1	12	321.785	-	-	6	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	5	1	6	2	33	31	33	31	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943624	13	111088970	TA	T	480	PASS	COL4A2	CCDS41907.1	r.?	-	-	Del	intronic	D	111088970	111088980	1	21	433.261	-	-	9	1	1	COL4A2|CCDS41907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A2|CCDS41907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	6	2	6	3	31	25	31	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943626	13	111092620	CT	C	300	PASS	COL4A2	CCDS41907.1	r.?	-	-	Del	intronic	D	111092620	111092629	1	12	271.164	-	-	8	1	1	COL4A2|CCDS41907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A2|CCDS41907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	3	4	11	26	11	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943741	13	111324238	CA	C	377	PASS	CARS2	CCDS9514.1	r.?	-	-	Del	intronic	D	111324238	111324247	1	14	375.415	-	-	8	1	1	CARS2|CCDS9514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CARS2|CCDS9514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	1	9	5	35	27	35	27	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943749	13	111342745	T	TTA	300	PASS	CARS2	CCDS9514.1	r.?	-	-	Ins	intronic	I	111342745	111342756	2	12	265.143	-	-	5	1	1	CARS2|CCDS9514.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CARS2|CCDS9514.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	5	3	28	14	28	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943873	13	111688769	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	111688769	111688779	1	12	267.552	-	-	9	1	-	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	3	2	3	5	25	34	25	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759943936	13	111861909	CT	C	480	PASS	ARHGEF7	CCDS45068.1	r.?	-	-	Del	intronic	D	111861909	111861918	1	21	429.046	-	-	8	1	1	ARHGEF7|CCDS45068.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF7|CCDS45068.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	6	2	7	20	27	20	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944011	13	112060801	CA	C	420	PASS	-	-	-	-	-	Del	-	D	112060801	112060809	1	20	379.63	-	-	7	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	4	3	6	4	25	33	25	33	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944109	13	112506076	TA	T	300	PASS	-	-	-	-	-	Del	-	D	112506076	112506082	1	12	270.562	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	4	5	21	36	21	36	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944249	13	112997412	CG	C	360	PASS	-	-	-	-	-	Del	-	D	112997412	112997420	1	16	324.193	-	-	7	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	3	3	5	4	17	26	17	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944253	13	113015951	AAT	A	420	PASS	-	-	-	-	-	Del	-	D	113015951	113015955	2	20	378.426	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	3	7	5	33	21	33	21	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944367	13	113446640	GA	G	360	PASS	ATP11A	CCDS32011.1	r.?	-	-	Del	intronic	D	113446640	113446650	1	12	325.397	-	-	9	1	1	ATP11A|CCDS32011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP11A|CCDS32011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	3	5	29	29	29	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944392	13	113555477	AT	A	420	PASS	MCF2L	ENST00000375608	r.?	-	-	Del	intronic	D	113555477	113555486	1	20	379.63	-	-	8	1	1	MCF2L|ENST00000375608|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MCF2L|ENST00000375608|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	4	3	5	8	27	26	27	26	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944555	13	114074334	AAGG	A	360	PASS	ADPRHL1	CCDS9536.1	r.?	-	-	Del	downstream	D	114074334	114074341	3	16	325.397	-	-	2	1	1	ADPRHL1|CCDS9536.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ADPRHL1|CCDS9536.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	4	5	31	21	31	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759944740	13	114873149	TC	T	360	PASS	RASA3	CCDS32016.1	r.?	-	-	Del	intronic	D	114873149	114873158	1	12	325.397	-	-	8	1	1	RASA3|CCDS32016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASA3|CCDS32016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	5	1	5	1	27	22	27	22	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945014	14	19451480	TA	T	262	PASS	-	-	-	-	-	Del	-	D	19451480	19451489	1	7	323.95	-	-	8	1	1	-	-	./.	0	0	0	0	29	25	33	25	0	0	./.	0	6	0	7	8	57	10	57	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945118	14	19795009	CT	C	480	PASS	-	-	-	-	-	Del	-	D	19795009	19795017	1	25	434.341	-	-	7	1	1	-	-	./.	0	0	0	0	26	34	26	34	0	0	./.	4	4	7	4	89	87	89	87	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945568	14	20983139	CA	C	480	PASS	RNASE10	CCDS32035.1	r.?	-	-	Del	downstream	D	20983139	20983149	1	24	431.933	-	-	9	1	1	RNASE10|CCDS32035.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RNASE10|CCDS32035.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	5	3	6	4	26	14	26	14	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945792	14	21597792	CA	C	420	PASS	-	-	-	-	-	Del	-	D	21597792	21597801	1	18	379.447	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	2	5	2	6	31	31	31	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945832	14	21692244	C	CAT	480	PASS	HNRNPC	CCDS41915.1	r.?	-	-	Ins	intronic	I	21692244	21692254	2	25	424.708	-	-	4	1	1	HNRNPC|CCDS41915.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HNRNPC|CCDS41915.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	10	0	0	./.	4	4	5	5	41	26	42	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945853	14	21757499	C	CA	449	PASS	RPGRIP1	CCDS45080.1	r.?	-	-	Ins	intronic	I	21757499	21757506	1	25	429.525	-	-	6	1	1	RPGRIP1|CCDS45080.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPGRIP1|CCDS45080.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	16	7	0	0	./.	4	4	5	6	31	24	32	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759945879	14	21790311	GT	G	420	PASS	RPGRIP1	CCDS45080.1	r.?	-	-	Del	intronic	D	21790311	21790321	1	18	374.63	-	-	9	1	1	RPGRIP1|CCDS45080.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPGRIP1|CCDS45080.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	5	2	6	4	24	30	24	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759946077	14	22203505	CA	C	360	PASS	-	-	-	-	-	Del	-	D	22203505	22203512	1	15	325.756	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	2	4	2	25	22	25	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759946121	14	22399572	AT	A	660	PASS	-	-	-	-	-	Del	-	D	22399572	22399582	1	42	597.219	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	6	5	9	5	39	19	39	19	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759946213	14	22764685	CT	C	300	PASS	TRAC	ENST00000446346	r.?	-	-	Del	intronic	D	22764685	22764695	1	12	271.463	-	-	9	1	1	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	4	4	14	16	14	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759946401	14	23181268	TAG	T	360	PASS	-	-	-	-	-	Del	-	D	23181268	23181287	2	16	325.756	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	3	3	3	28	20	28	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759946538	14	23435658	CA	C	389	PASS	JUB	CCDS9581.1	r.?	-	-	Del	downstream	D	23435658	23435668	1	18	380.049	-	-	9	1	1	JUB|CCDS9581.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	JUB|CCDS9581.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	5	2	5	2	20	19	20	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759947134	14	25333830	GA	G	480	PASS	STXBP6	CCDS9634.1	r.?	-	-	Del	intronic	D	25333830	25333839	1	25	434.341	-	-	8	1	1	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	4	4	5	12	30	12	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759947135	14	25334104	TA	T	300	PASS	STXBP6	CCDS9634.1	r.?	-	-	Del	intronic	D	25334104	25334113	1	6	270.861	-	-	8	1	1	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	0	5	1	6	2	17	2	17	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759947147	14	25376160	TA	T	540	PASS	STXBP6	CCDS9634.1	r.?	-	-	Del	intronic	D	25376160	25376169	1	30	488.634	-	-	8	1	1	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	5	4	5	4	23	27	23	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759947568	14	26753020	TTG	T	360	PASS	-	-	-	-	-	Del	-	D	26753020	26753029	2	15	325.756	-	-	4	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	5	3	26	31	26	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759947761	14	27368767	TA	T	480	PASS	-	-	-	-	-	Del	-	D	27368767	27368777	1	16	430.729	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	7	1	9	1	23	3	23	3	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948028	14	28399724	AT	A	360	PASS	-	-	-	-	-	Del	-	D	28399724	28399733	1	7	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	6	0	6	0	25	7	25	7	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948029	14	28410593	CA	C	457	PASS	-	-	-	-	-	Del	-	D	28410593	28410602	1	24	434.341	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	5	5	5	28	21	28	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948129	14	29011160	AT	A	300	PASS	-	-	-	-	-	Del	-	D	29011160	29011165	1	12	271.463	-	-	4	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	3	2	6	2	25	13	25	13	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948133	14	29030726	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	29030726	29030736	1	12	314.317	-	-	9	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	1	5	1	7	14	28	15	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948172	14	29124766	CA	C	420	PASS	-	-	-	-	-	Del	-	D	29124766	29124774	1	20	380.049	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	3	5	3	27	15	27	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948183	14	29181151	TA	T	397	PASS	-	-	-	-	-	Del	-	D	29181151	29181157	1	18	380.049	-	-	5	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	2	5	2	8	19	20	19	20	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948230	14	29336295	GT	G	360	PASS	-	-	-	-	-	Del	-	D	29336295	29336304	1	16	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	3	3	4	3	22	20	22	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948257	14	29518269	AT	A	420	PASS	-	-	-	-	-	Del	-	D	29518269	29518279	1	18	380.049	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	3	7	10	27	10	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948411	14	30092598	GA	G	360	PASS	PRKD1	CCDS9637.1	r.?	-	-	Del	intronic	D	30092598	30092607	1	15	325.756	-	-	8	1	1	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	4	4	8	28	39	28	39	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948425	14	30133217	AT	A	300	PASS	PRKD1	CCDS9637.1	r.?	-	-	Del	intronic	D	30133217	30133226	1	12	269.657	-	-	8	1	1	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	5	2	30	19	30	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948486	14	30382752	GA	G	300	PASS	PRKD1	CCDS9637.1	r.?	-	-	Del	intronic	D	30382752	30382760	1	12	271.463	-	-	7	1	1	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	4	4	22	23	22	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948510	14	30478597	TA	T	360	PASS	-	-	-	-	-	Del	-	D	30478597	30478606	1	12	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	1	5	1	4	10	14	10	14	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948547	14	30624010	CT	C	360	PASS	-	-	-	-	-	Del	-	D	30624010	30624019	1	12	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	1	5	2	23	19	23	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948763	14	31481129	TA	T	300	PASS	STRN3	CCDS41938.1	r.?	-	-	Del	intronic	D	31481129	31481139	1	10	271.463	-	-	9	1	1	STRN3|CCDS41938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STRN3|CCDS41938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	1	6	1	27	4	27	4	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948812	14	31585837	CT	C	360	PASS	HECTD1	CCDS41939.1	r.?	-	-	Del	intronic	D	31585837	31585847	1	15	325.756	-	-	9	1	1	HECTD1|CCDS41939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HECTD1|CCDS41939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	2	5	2	36	28	36	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759948960	14	31854701	AT	A	540	PASS	HEATR5A	CCDS45094.1	r.?	-	-	Del	intronic	D	31854701	31854711	1	28	488.634	-	-	9	1	1	HEATR5A|CCDS45094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HEATR5A|CCDS45094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	6	3	7	4	33	36	33	36	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949044	14	32115401	CT	C	420	PASS	NUBPL	CCDS41940.1	r.?	-	-	Del	intronic	D	32115401	32115411	1	20	379.446	-	-	9	1	1	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	4	4	6	32	34	32	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949052	14	32154714	CT	C	360	PASS	NUBPL	CCDS41940.1	r.?	-	-	Del	intronic	D	32154714	32154724	1	16	325.756	-	-	9	1	1	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	4	28	24	28	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949066	14	32182590	AT	A	480	PASS	NUBPL	CCDS41940.1	r.?	-	-	Del	intronic	D	32182590	32182598	1	21	433.739	-	-	7	1	1	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	2	6	3	37	22	37	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949203	14	32693366	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	32693366	32693373	1	18	371.62	-	-	6	1	1	-	-	./.	0	0	0	0	15	11	15	12	0	0	./.	2	5	2	9	19	32	19	33	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949271	14	32903566	T	TA	420	PASS	AKAP6	CCDS9644.1	r.?	-	-	Ins	intronic	I	32903566	32903576	1	20	372.222	-	-	9	1	1	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	18	0	0	./.	4	3	5	5	24	26	25	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949468	14	33460146	CA	C	300	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	33460146	33460156	1	6	271.463	-	-	9	1	-	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	0	8	1	27	25	27	25	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949578	14	33818808	AT	A	600	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	33818808	33818817	1	27	541.12	-	-	8	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	2	8	4	11	16	36	16	36	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949623	14	33973482	CTT	C	420	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	33973482	33973490	2	20	380.049	-	-	7	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	4	3	4	4	18	20	18	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949728	14	34383426	CA	C	300	PASS	-	-	-	-	-	Del	-	D	34383426	34383436	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	3	3	21	17	21	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759949732	14	34399023	TA	T	360	PASS	EGLN3	CCDS9646.1	r.?	-	-	Del	intronic	D	34399023	34399033	1	15	325.756	-	-	9	1	1	EGLN3|CCDS9646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EGLN3|CCDS9646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	4	3	18	26	18	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950204	14	35389470	CA	C	420	PASS	AL049776.2	ENST00000511927	r.?	-	-	Del	intronic	D	35389470	35389480	1	20	380.049	-	-	9	1	1	AL049776.2|ENST00000511927|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL049776.2|ENST00000511927|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	4	4	4	20	23	20	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950250	14	35465583	CA	C	420	PASS	SRP54	CCDS9652.1	r.?	-	-	Del	intronic	D	35465583	35465591	1	14	379.446	-	-	7	1	1	SRP54|CCDS9652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SRP54|CCDS9652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	1	8	1	27	12	27	12	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950641	14	36489354	GA	G	300	PASS	-	-	-	-	-	Del	-	D	36489354	36489364	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	2	4	3	29	20	29	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950773	14	36935582	CCTTT	C	251	PASS	-	-	-	-	-	Del	-	D	36935582	36935593	4	14	378.242	-	-	2	1	1	-	-	./.	0	0	0	0	4	18	4	18	0	0	./.	1	6	1	6	17	23	17	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950783	14	36978506	GA	G	360	PASS	SFTA3	CCDS45097.1	r.?	-	-	Del	intronic	D	36978506	36978513	1	16	325.756	-	-	6	1	1	SFTA3|CCDS45097.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFTA3|CCDS45097.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	3	3	8	28	26	28	26	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950880	14	37219413	A	AT	480	PASS	SLC25A21	CCDS9663.1	r.?	-	-	Ins	intronic	I	37219413	37219422	1	25	428.321	-	-	8	1	1	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	4	4	6	17	19	17	19	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759950948	14	37424742	A	AT	420	PASS	SLC25A21	CCDS9663.1	r.?	-	-	Ins	intronic	I	37424742	37424752	1	18	368.007	-	-	9	1	1	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	2	5	4	29	24	29	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951017	14	37677207	GT	G	480	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Del	intronic	D	37677207	37677215	1	25	434.341	-	-	7	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	4	4	4	4	17	22	17	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951032	14	37743782	AT	A	420	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Del	intronic	D	37743782	37743790	1	14	380.049	-	-	7	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	1	6	2	6	10	26	10	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951067	14	37848973	AT	A	300	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Del	intronic	D	37848973	37848982	1	10	271.463	-	-	8	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	1	4	3	4	21	17	21	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951208	14	38393592	CT	C	300	PASS	-	-	-	-	-	Del	-	D	38393592	38393602	1	10	264.841	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	1	4	1	4	26	28	26	28	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951257	14	38575630	CT	C	300	PASS	-	-	-	-	-	Del	-	D	38575630	38575640	1	12	270.259	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	4	3	15	24	15	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951467	14	39343713	TA	T	360	PASS	-	-	-	-	-	Del	-	D	39343713	39343723	1	15	325.756	-	-	9	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	4	2	4	27	28	27	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951562	14	39597857	GT	G	300	PASS	SIP1	CCDS9669.1	r.?	-	-	Del	intronic	D	39597857	39597866	1	10	271.463	-	-	8	1	-	SIP1|CCDS9669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIP1|CCDS9669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	4	1	6	1	31	10	31	10	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951752	14	40077468	TC	T	300	PASS	-	-	-	-	-	Del	-	D	40077468	40077478	1	10	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	4	1	6	1	27	12	27	12	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951870	14	40508020	AT	A	300	PASS	-	-	-	-	-	Del	-	D	40508020	40508025	1	10	271.463	-	-	4	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	1	6	20	17	20	17	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759951974	14	40833863	AT	A	300	PASS	-	-	-	-	-	Del	-	D	40833863	40833869	1	12	270.259	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	5	6	26	32	26	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952060	14	41177898	GA	G	300	PASS	-	-	-	-	-	Del	-	D	41177898	41177907	1	10	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	1	4	12	24	12	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952083	14	41317350	CA	C	480	PASS	-	-	-	-	-	Del	-	D	41317350	41317359	1	21	433.739	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	6	3	8	10	25	10	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952108	14	41375285	GA	G	420	PASS	-	-	-	-	-	Del	-	D	41375285	41375293	1	8	380.049	-	-	7	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	7	0	9	0	38	2	38	2	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952207	14	41647098	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	41647098	41647106	1	12	268.453	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	4	3	29	17	29	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952343	14	42157894	C	CA	329	PASS	LRFN5	CCDS9678.1	r.?	-	-	Ins	intronic	I	42157894	42157903	1	7	322.144	-	-	8	1	-	LRFN5|CCDS9678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRFN5|CCDS9678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	15	0	0	./.	6	0	10	0	21	1	21	1	10	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952675	14	43445035	AT	A	300	PASS	-	-	-	-	-	Del	-	D	43445035	43445044	1	10	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	4	1	26	14	26	14	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759952963	14	44665426	GT	G	420	PASS	-	-	-	-	-	Del	-	D	44665426	44665434	1	20	380.049	-	-	7	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	4	3	5	5	22	31	22	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953030	14	44914627	CT	C	480	PASS	-	-	-	-	-	Del	-	D	44914627	44914637	1	24	431.933	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	5	4	5	24	31	24	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953055	14	44967892	TG	T	277	PASS	-	-	-	-	-	Del	-	D	44967892	44967894	1	10	271.463	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	5	2	20	20	20	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953187	14	45503379	C	CA	360	PASS	FAM179B	CCDS9681.1	r.?	-	-	Ins	intronic	I	45503379	45503387	1	15	322.144	-	-	7	1	1	FAM179B|CCDS9681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM179B|CCDS9681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	2	4	4	4	26	19	26	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953228	14	45596028	CT	C	360	PASS	FKBP3	CCDS9683.1	r.?	-	-	Del	intronic	D	45596028	45596037	1	15	324.552	-	-	8	1	1	FKBP3|CCDS9683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FKBP3|CCDS9683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	4	2	5	18	36	18	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953312	14	45866303	CA	C	300	PASS	-	-	-	-	-	Del	-	D	45866303	45866313	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	3	25	20	25	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953438	14	46345040	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	46345040	46345048	1	6	268.453	-	-	7	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	5	0	7	0	32	10	32	10	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953519	14	46619333	GT	G	360	PASS	-	-	-	-	-	Del	-	D	46619333	46619341	1	15	325.756	-	-	7	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	4	2	6	2	34	12	34	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953668	14	47081936	CT	C	300	PASS	-	-	-	-	-	Del	-	D	47081936	47081946	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	6	3	23	24	23	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953913	14	47934073	CAAACA	C	300	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	47934073	47934096	5	10	271.463	-	-	4	1	-	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	1	24	25	24	25	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953925	14	48016216	TA	T	300	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	48016216	48016225	1	12	269.657	-	-	8	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	2	3	4	5	28	29	28	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759953945	14	48100034	CA	C	300	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	48100034	48100041	1	12	271.463	-	-	6	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	3	2	18	20	18	20	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954031	14	48342635	CT	C	300	PASS	-	-	-	-	-	Del	-	D	48342635	48342644	1	10	269.657	-	-	8	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	1	4	2	4	11	26	11	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954067	14	48438117	CT	C	480	PASS	-	-	-	-	-	Del	-	D	48438117	48438126	1	25	434.341	-	-	8	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	4	7	6	32	26	32	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954330	14	49549434	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	49549434	49549441	1	12	268.453	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	4	2	33	16	33	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954365	14	49708930	CA	C	480	PASS	-	-	-	-	-	Del	-	D	49708930	49708940	1	16	434.341	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	1	7	1	9	22	38	22	38	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954387	14	49813262	TA	T	360	PASS	-	-	-	-	-	Del	-	D	49813262	49813271	1	16	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	5	3	24	29	24	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954430	14	50008345	CT	C	300	PASS	-	-	-	-	-	Del	-	D	50008345	50008354	1	12	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	5	2	21	32	21	32	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954462	14	50083199	GT	G	540	PASS	MGAT2	CCDS9690.1	r.?	-	-	Del	upstream	D	50083199	50083208	1	24	488.032	-	-	8	1	1	MGAT2|CCDS9690.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MGAT2|CCDS9690.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	23	10	23	10	0	0	./.	2	7	3	7	35	29	35	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954471	14	50116176	C	CT	389	PASS	POLE2	CCDS32073.1	r.?	-	-	Ins	intronic	I	50116176	50116186	1	14	375.232	-	-	9	1	1	POLE2|CCDS32073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POLE2|CCDS32073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	6	1	8	2	21	15	21	15	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954550	14	50259919	CA	C	420	PASS	SDCCAG1	CCDS9694.1	r.?	-	-	Del	intronic	D	50259919	50259929	1	20	380.049	-	-	9	1	1	SDCCAG1|CCDS9694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG1|CCDS9694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	4	3	5	25	20	25	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954580	14	50305203	AT	A	594	PASS	SDCCAG1	CCDS9694.1	r.?	-	-	Del	intronic	D	50305203	50305209	1	35	542.927	-	-	5	1	1	SDCCAG1|CCDS9694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG1|CCDS9694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	6	4	7	4	32	34	32	34	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954604	14	50350120	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	50350120	50350129	1	27	535.1	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	10	6	0	0	./.	2	8	2	10	38	36	38	37	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954667	14	50484061	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	50484061	50484069	1	20	375.834	-	-	7	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	4	3	4	29	25	30	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954703	14	50578021	GT	G	600	PASS	C14orf138	CCDS9696.2	r.?	-	-	Del	intronic	D	50578021	50578030	1	35	542.927	-	-	8	1	1	C14orf138|CCDS9696.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C14orf138|CCDS9696.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	6	4	7	5	31	21	31	21	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954813	14	50825257	TA	T	300	PASS	CDKL1	CCDS9699.1	r.?	-	-	Del	intronic	D	50825257	50825259	1	10	271.463	-	-	1	1	1	CDKL1|CCDS9699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKL1|CCDS9699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	1	4	2	5	12	34	12	34	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759954886	14	51026462	G	GA	360	PASS	ATL1	CCDS32077.1	r.?	-	-	Ins	intronic	I	51026462	51026472	1	12	322.144	-	-	9	1	1	ATL1|CCDS32077.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATL1|CCDS32077.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	1	6	4	37	30	38	31	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955017	14	51463820	T	TG	600	PASS	TRIM9	CCDS45105.1	r.3315_3316insc	c.?	p.?	Ins	3'UTR variant	I	51463820	51463828	1	35	535.702	-	-	7	1	1	TRIM9|CCDS45105.1|r.3315_3316insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TRIM9|CCDS45105.1|r.3315_3316insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	6	10	6	10	0	0	./.	4	6	7	8	28	28	30	29	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955089	14	51630723	CA	C	300	PASS	-	-	-	-	-	Del	-	D	51630723	51630733	1	10	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	1	4	3	5	40	17	40	17	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955156	14	51784562	TA	T	360	PASS	-	-	-	-	-	Del	-	D	51784562	51784569	1	15	325.756	-	-	6	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	2	5	5	22	21	22	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955284	14	52183713	AT	A	300	PASS	FRMD6	CCDS9704.1	r.?	-	-	Del	intronic	D	52183713	52183722	1	6	271.463	-	-	8	1	1	FRMD6|CCDS9704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD6|CCDS9704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	0	5	1	5	19	24	19	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955307	14	52282689	TA	T	420	PASS	AL079307.3	ENST00000504267	r.?	-	-	Del	intronic	D	52282689	52282694	1	14	379.447	-	-	4	1	1	AL079307.3|ENST00000504267|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL079307.3|ENST00000504267|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	1	6	2	7	14	32	14	32	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955374	14	52481918	CG	C	420	PASS	NID2	CCDS9706.1	r.3103delC	c.3103delC	p.R1035fs*67	Del	frameshift	D	52481918	52481925	1	18	380.049	-	-	6	1	1	NID2|CCDS9706.1|r.3103delC|c.3103delC|p.R1035fs*67|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	NID2|CCDS9706.1|r.3103delC|c.3103delC|p.R1035fs*67|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	9	8	9	0	0	./.	5	2	6	4	27	27	27	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955514	14	52871729	GT	G	360	PASS	-	-	-	-	-	Del	-	D	52871729	52871737	1	15	325.756	-	-	7	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	2	4	5	7	33	30	33	30	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955923	14	54002766	AT	A	300	PASS	-	-	-	-	-	Del	-	D	54002766	54002775	1	12	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	3	3	4	21	17	21	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759955946	14	54110858	CT	C	360	PASS	-	-	-	-	-	Del	-	D	54110858	54110868	1	15	325.756	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	2	5	2	26	22	26	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956170	14	54842697	AT	A	360	PASS	-	-	-	-	-	Del	-	D	54842697	54842707	1	16	325.154	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	6	5	24	22	24	22	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956178	14	54872385	CT	C	360	PASS	CDKN3	CCDS9716.1	r.?	-	-	Del	intronic	D	54872385	54872394	1	15	325.756	-	-	8	1	1	CDKN3|CCDS9716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKN3|CCDS9716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	5	5	22	24	22	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956194	14	54938298	CT	C	360	PASS	GMFB	CCDS9718.1	r.?	-	-	Del	downstream	D	54938298	54938307	1	15	321.541	-	-	8	1	1	GMFB|CCDS9718.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GMFB|CCDS9718.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	7	8	7	0	0	./.	2	4	2	5	24	23	24	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956195	14	54942812	CA	C	480	PASS	GMFB	CCDS9718.1	r.2518delU	c.?	p.?	Del	3'UTR variant	D	54942812	54942818	1	24	434.341	-	-	5	1	1	GMFB|CCDS9718.1|r.2518delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GMFB|CCDS9718.1|r.2518delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	8	13	8	0	0	./.	3	5	5	6	21	27	21	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956369	14	55546383	GT	G	300	PASS	-	-	-	-	-	Del	-	D	55546383	55546393	1	12	270.861	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	4	19	25	19	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956533	14	56035860	GA	G	300	PASS	-	-	-	-	-	Del	-	D	56035860	56035870	1	10	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	1	4	2	5	10	26	10	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956594	14	56204018	AT	A	300	PASS	-	-	-	-	-	Del	-	D	56204018	56204027	1	12	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	4	6	26	28	26	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956851	14	57078727	TA	T	360	PASS	C14orf101	CCDS9727.2	r.?	-	-	Del	intronic	D	57078727	57078735	1	12	325.756	-	-	7	1	1	C14orf101|CCDS9727.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C14orf101|CCDS9727.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	1	5	5	20	22	20	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956867	14	57115954	GA	G	360	PASS	C14orf101	CCDS9727.2	r.3986delA	c.?	p.?	Del	3'UTR variant	D	57115954	57115962	1	7	325.756	-	-	7	1	1	C14orf101|CCDS9727.2|r.3986delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C14orf101|CCDS9727.2|r.3986delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	10	10	10	0	0	./.	0	6	1	6	14	23	14	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759956895	14	57195297	AT	A	300	PASS	-	-	-	-	-	Del	-	D	57195297	57195305	1	6	271.463	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	0	5	1	7	3	25	3	25	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957021	14	57533242	TA	T	480	PASS	-	-	-	-	-	Del	-	D	57533242	57533251	1	21	434.341	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	6	3	9	21	30	21	30	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957153	14	58118435	A	AGT	600	PASS	-	-	-	-	-	Ins	-	I	58118435	58118449	2	35	530.885	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	6	4	6	4	31	25	31	25	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957237	14	58464772	TTCC	T	509	PASS	-	-	-	-	-	Del	-	D	58464772	58464783	3	30	488.634	-	-	3	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	5	4	8	32	39	32	39	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957378	14	58806929	CT	C	420	PASS	ARID4A	CCDS9732.1	r.?	-	-	Del	intronic	D	58806929	58806939	1	18	379.447	-	-	9	1	1	ARID4A|CCDS9732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID4A|CCDS9732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	5	4	8	26	22	26	22	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957442	14	58983537	CA	C	360	PASS	KIAA0586	CCDS45115.1	r.?	-	-	Del	intronic	D	58983537	58983547	1	12	325.756	-	-	9	1	1	KIAA0586|CCDS45115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0586|CCDS45115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	1	7	1	26	19	26	19	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957443	14	58998751	CG	C	300	PASS	KIAA0586	CCDS45115.1	r.?	-	-	Del	intronic	D	58998751	58998758	1	12	271.463	-	-	6	1	1	KIAA0586|CCDS45115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0586|CCDS45115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	3	2	11	3	33	21	33	21	11	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957641	14	59681450	A	AT	420	PASS	DAAM1	CCDS9737.1	r.?	-	-	Ins	intronic	I	59681450	59681460	1	18	374.028	-	-	9	1	1	DAAM1|CCDS9737.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DAAM1|CCDS9737.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	2	7	30	30	30	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957675	14	59800067	GA	G	360	PASS	DAAM1	CCDS9737.1	r.?	-	-	Del	intronic	D	59800067	59800075	1	15	325.756	-	-	7	1	1	DAAM1|CCDS9737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAAM1|CCDS9737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	4	4	26	18	26	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957764	14	60075633	TA	T	329	PASS	RTN1	CCDS9740.1	r.?	-	-	Del	intronic	D	60075633	60075643	1	15	325.756	-	-	9	1	1	RTN1|CCDS9740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RTN1|CCDS9740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	4	4	7	22	26	22	26	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957809	14	60242101	CT	C	300	PASS	RTN1	CCDS9740.1	r.?	-	-	Del	intronic	D	60242101	60242111	1	6	271.463	-	-	9	1	1	RTN1|CCDS9740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RTN1|CCDS9740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	0	5	1	5	23	31	23	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759957930	14	60790106	TG	T	420	PASS	-	-	-	-	-	Del	-	D	60790106	60790111	1	18	378.844	-	-	4	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	2	5	2	31	19	31	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958027	14	61149989	CG	C	449	PASS	-	-	-	-	-	Del	-	D	61149989	61149994	1	24	424.708	-	-	4	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	3	5	6	6	26	27	26	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958091	14	61319093	GT	G	420	PASS	MNAT1	CCDS9750.1	r.?	-	-	Del	intronic	D	61319093	61319102	1	18	380.049	-	-	8	1	1	MNAT1|CCDS9750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MNAT1|CCDS9750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	5	2	10	5	34	33	34	33	10	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958124	14	61444961	AT	A	480	PASS	TRMT5	CCDS32092.1	r.?	-	-	Del	intronic	D	61444961	61444969	1	16	434.341	-	-	7	1	1	TRMT5|CCDS32092.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRMT5|CCDS32092.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	7	1	8	12	32	12	32	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958424	14	62294354	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	62294354	62294364	1	10	268.453	-	-	9	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	1	4	1	5	2	23	2	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958488	14	62565877	CTT	C	360	PASS	SYT16	CCDS45121.1	r.?	-	-	Del	intronic	D	62565877	62565881	2	16	323.348	-	-	3	1	1	SYT16|CCDS45121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT16|CCDS45121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	3	7	28	25	28	25	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958579	14	62919484	GA	G	300	PASS	-	-	-	-	-	Del	-	D	62919484	62919494	1	10	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	5	1	17	6	17	6	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958876	14	64248196	CT	C	300	PASS	-	-	-	-	-	Del	-	D	64248196	64248206	1	10	270.259	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	1	4	1	5	1	28	1	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759958898	14	64292590	CA	C	360	PASS	-	-	-	-	-	Del	-	D	64292590	64292599	1	15	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	4	3	4	33	24	33	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759959232	14	65559813	GA	G	300	PASS	MAX	CCDS9773.1	r.?	-	-	Del	intronic	D	65559813	65559818	1	10	271.463	-	-	4	1	1	MAX|CCDS9773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAX|CCDS9773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	1	5	17	21	17	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759959335	14	65867602	CA	C	420	PASS	-	-	-	-	-	Del	-	D	65867602	65867612	1	20	378.242	-	-	9	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	3	4	3	5	20	25	20	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759959982	14	68464386	AT	A	420	PASS	RAD51L1	CCDS9789.1	r.?	-	-	Del	intronic	D	68464386	68464392	1	20	380.049	-	-	5	1	1	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	4	3	4	19	16	19	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759960193	14	69321042	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	69321042	69321048	1	12	267.249	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	3	3	19	22	20	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759960368	14	69899766	GT	G	300	PASS	SLC39A9	CCDS9795.1	r.?	-	-	Del	intronic	D	69899766	69899775	1	6	271.463	-	-	8	1	1	SLC39A9|CCDS9795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC39A9|CCDS9795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	0	5	1	5	2	21	2	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759960436	14	70157643	CT	C	360	PASS	KIAA0247	CCDS9796.1	r.?	-	-	Del	intronic	D	70157643	70157648	1	15	325.756	-	-	4	1	1	KIAA0247|CCDS9796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0247|CCDS9796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	2	4	4	4	23	21	23	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759960483	14	70311199	GA	G	300	PASS	-	-	-	-	-	Del	-	D	70311199	70311206	1	10	270.861	-	-	6	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	4	2	10	18	20	18	20	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759960520	14	70475854	GT	G	420	PASS	SMOC1	CCDS32110.1	r.?	-	-	Del	intronic	D	70475854	70475863	1	18	380.049	-	-	8	1	1	SMOC1|CCDS32110.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMOC1|CCDS32110.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	2	8	5	31	31	31	31	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759960961	14	71849373	GT	G	300	PASS	-	-	-	-	-	Del	-	D	71849373	71849383	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	4	3	29	22	29	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759961083	14	72325847	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	72325847	72325856	1	15	322.144	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	4	2	21	22	21	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759961156	14	72544348	CT	C	600	PASS	RGS6	CCDS9808.1	r.?	-	-	Del	intronic	D	72544348	72544357	1	35	542.927	-	-	8	1	1	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	4	8	6	21	25	21	25	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759961424	14	73476786	C	CA	300	PASS	ZFYVE1	CCDS9811.1	r.?	-	-	Ins	intronic	I	73476786	73476795	1	10	268.453	-	-	8	1	1	ZFYVE1|CCDS9811.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFYVE1|CCDS9811.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	21	0	0	./.	4	1	4	2	23	30	23	30	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759961845	14	74480262	ATTC	A	509	PASS	ENTPD5	CCDS9825.1	r.?	-	-	Del	intronic	D	74480262	74480275	3	30	488.634	-	-	4	1	1	ENTPD5|CCDS9825.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENTPD5|CCDS9825.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	5	4	6	4	17	18	17	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759961940	14	74677200	CA	C	420	PASS	-	-	-	-	-	Del	-	D	74677200	74677210	1	20	379.446	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	3	7	3	27	19	27	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759962024	14	74912099	CA	C	360	PASS	-	-	-	-	-	Del	-	D	74912099	74912107	1	16	325.756	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	3	4	3	15	8	15	8	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759962348	14	76024284	CAGAG	C	298	PASS	-	-	-	-	-	Del	-	D	76024284	76024297	4	16	320.939	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	3	2	17	12	17	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759962378	14	76144915	CT	C	480	PASS	TTLL5	CCDS32124.1	r.?	-	-	Del	intronic	D	76144915	76144925	1	25	434.341	-	-	9	1	1	TTLL5|CCDS32124.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTLL5|CCDS32124.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	4	5	5	23	22	23	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759962565	14	76909508	T	TA	360	PASS	ESRRB	CCDS9850.1	r.?	-	-	Ins	intronic	I	76909508	76909517	1	15	322.144	-	-	8	1	1	ESRRB|CCDS9850.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESRRB|CCDS9850.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	15	8	0	0	./.	4	2	5	2	20	11	21	11	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759962830	14	77521010	T	TG	329	PASS	AC007686.1	ENST00000500215	r.?	-	-	Ins	intronic	I	77521010	77521019	1	16	318.531	-	-	8	1	1	AC007686.1|ENST00000500215|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC007686.1|ENST00000500215|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	3	4	24	17	24	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759963203	14	78331660	TA	T	540	PASS	ADCK1	CCDS9869.1	r.?	-	-	Del	intronic	D	78331660	78331669	1	30	488.634	-	-	8	1	1	ADCK1|CCDS9869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCK1|CCDS9869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	4	5	7	7	25	32	25	32	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759963359	14	78897998	GA	G	300	PASS	-	-	-	-	-	Del	-	D	78897998	78898008	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	3	16	3	16	0	0	./.	2	3	2	5	14	26	14	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759963362	14	78905512	TA	T	300	PASS	-	-	-	-	-	Del	-	D	78905512	78905521	1	12	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	5	2	26	21	26	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759963832	14	80939600	C	CG	600	PASS	-	-	-	-	-	Ins	-	I	80939600	80939608	1	36	534.498	-	-	7	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	5	6	6	25	23	26	23	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759963893	14	81240633	TA	T	420	PASS	C14orf145	CCDS32130.1	r.?	-	-	Del	intronic	D	81240633	81240642	1	18	380.049	-	-	8	1	1	C14orf145|CCDS32130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C14orf145|CCDS32130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	5	4	6	16	25	16	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759963948	14	81548636	TTA	T	480	PASS	TSHR	CCDS9872.1	r.?	-	-	Del	intronic	D	81548636	81548640	2	25	434.341	-	-	1	1	1	TSHR|CCDS9872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHR|CCDS9872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	4	6	5	24	11	24	11	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964145	14	82517309	GT	G	300	PASS	-	-	-	-	-	Del	-	D	82517309	82517318	1	10	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	1	4	22	27	22	27	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964167	14	82612500	TA	T	420	PASS	-	-	-	-	-	Del	-	D	82612500	82612503	1	20	378.242	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	4	6	12	24	12	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964417	14	83659317	CT	C	480	PASS	-	-	-	-	-	Del	-	D	83659317	83659325	1	24	434.341	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	5	5	6	26	19	26	19	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964477	14	83929861	TA	T	420	PASS	-	-	-	-	-	Del	-	D	83929861	83929868	1	18	380.049	-	-	6	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	5	4	9	16	25	16	25	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964666	14	84675747	GC	G	269	PASS	-	-	-	-	-	Del	-	D	84675747	84675756	1	10	271.463	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	6	5	26	21	26	21	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964773	14	85082339	T	TCAA	360	PASS	-	-	-	-	-	Ins	-	I	85082339	85082364	3	15	314.919	-	-	8	1	-	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	5	3	23	21	23	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759964907	14	85620255	CT	C	360	PASS	-	-	-	-	-	Del	-	D	85620255	85620264	1	12	325.756	-	-	8	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	5	1	5	1	16	19	16	19	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965152	14	86426139	GT	G	420	PASS	-	-	-	-	-	Del	-	D	86426139	86426148	1	20	380.049	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	3	4	3	18	8	18	8	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965219	14	86660276	AT	A	300	PASS	-	-	-	-	-	Del	-	D	86660276	86660286	1	10	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	1	4	1	26	5	26	5	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965258	14	86736687	AT	A	473	PASS	-	-	-	-	-	Del	-	D	86736687	86736695	1	24	434.341	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	3	7	3	24	3	24	3	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965344	14	86965139	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	86965139	86965149	1	10	268.453	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	1	5	1	27	5	27	6	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965349	14	86989535	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	86989535	86989541	1	21	429.525	-	-	5	1	-	-	-	./.	0	0	0	0	15	9	15	10	0	0	./.	6	2	6	2	26	10	26	10	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965411	14	87191013	CT	C	300	PASS	-	-	-	-	-	Del	-	D	87191013	87191020	1	10	271.463	-	-	6	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	4	1	4	1	15	10	15	10	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965511	14	87591744	CT	C	358	PASS	-	-	-	-	-	Del	-	D	87591744	87591752	1	20	379.446	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	3	4	3	12	18	12	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965582	14	87981730	GA	G	360	PASS	-	-	-	-	-	Del	-	D	87981730	87981740	1	12	320.939	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	1	5	2	6	5	24	5	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759965911	14	89208074	CA	C	300	PASS	EML5	CCDS45148.1	r.?	-	-	Del	intronic	D	89208074	89208082	1	6	271.463	-	-	7	1	1	EML5|CCDS45148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EML5|CCDS45148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	0	5	0	7	0	22	0	22	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759966453	14	90839515	TA	T	269	PASS	-	-	-	-	-	Del	-	D	90839515	90839525	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	2	3	3	4	21	14	21	14	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967033	14	92630061	GT	G	600	PASS	CPSF2	CCDS9902.1	r.4560delU	c.?	p.?	Del	3'UTR variant	D	92630061	92630071	1	32	541.722	-	-	9	1	1	CPSF2|CCDS9902.1|r.4560delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CPSF2|CCDS9902.1|r.4560delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	15	11	15	0	0	./.	3	7	8	7	26	24	26	24	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967291	14	93435732	TG	T	300	PASS	ITPK1	CCDS9907.1	r.?	-	-	Del	intronic	D	93435732	93435740	1	10	270.259	-	-	7	1	1	ITPK1|CCDS9907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPK1|CCDS9907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	4	1	4	1	23	20	23	20	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967462	14	94125648	GT	G	420	PASS	KIAA1409	CCDS9911.2	r.?	-	-	Del	intronic	D	94125648	94125657	1	20	380.049	-	-	8	1	1	KIAA1409|CCDS9911.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1409|CCDS9911.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	4	3	4	19	11	19	11	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967465	14	94139525	CA	C	360	PASS	KIAA1409	CCDS9911.2	r.?	-	-	Del	intronic	D	94139525	94139531	1	15	325.756	-	-	5	1	1	KIAA1409|CCDS9911.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1409|CCDS9911.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	2	4	26	26	26	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967472	14	94180782	TC	T	480	PASS	PRIMA1	CCDS9912.1	r.?	-	-	Del	downstream	D	94180782	94180789	1	25	434.341	-	-	6	1	1	PRIMA1|CCDS9912.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRIMA1|CCDS9912.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	5	4	23	22	23	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967516	14	94365403	GA	G	360	PASS	-	-	-	-	-	Del	-	D	94365403	94365408	1	12	325.154	-	-	4	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	5	1	8	3	32	19	32	19	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759967893	14	95697923	CA	C	300	PASS	CLMN	CCDS9933.1	r.?	-	-	Del	intronic	D	95697923	95697929	1	10	271.463	-	-	5	1	1	CLMN|CCDS9933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLMN|CCDS9933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	7	2	30	19	30	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759968320	14	97046279	AG	A	480	PASS	-	-	-	-	-	Del	-	D	97046279	97046284	1	25	434.341	-	-	4	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	4	6	5	23	26	23	26	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759968593	14	98133377	A	AT	300	PASS	ENSG00000197176	ENST00000355909	r.?	-	-	Ins	intronic	I	98133377	98133382	1	12	268.453	-	-	4	1	1	ENSG00000197176|ENST00000355909|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000197176|ENST00000355909|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	3	3	21	30	21	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759968995	14	99610817	AT	A	420	PASS	-	-	-	-	-	Del	-	D	99610817	99610824	1	18	380.049	-	-	6	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	2	8	5	27	25	27	25	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759969112	14	100031694	AC	A	600	PASS	CCDC85C	CCDS45161.1	r.?	-	-	Del	intronic	D	100031694	100031700	1	32	542.324	-	-	5	1	1	CCDC85C|CCDS45161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC85C|CCDS45161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	3	7	4	8	22	37	22	37	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759969269	14	100429262	AT	A	420	PASS	-	-	-	-	-	Del	-	D	100429262	100429272	1	18	380.049	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	2	6	3	14	16	14	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759969761	14	102291606	T	TA	269	PASS	PPP2R5C	CCDS9964.1	r.?	-	-	Ins	intronic	I	102291606	102291614	1	10	261.228	-	-	7	1	1	PPP2R5C|CCDS9964.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP2R5C|CCDS9964.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	3	4	13	17	13	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759969768	14	102324180	AT	A	420	PASS	PPP2R5C	CCDS9964.1	r.?	-	-	Del	intronic	D	102324180	102324190	1	14	377.64	-	-	9	1	1	PPP2R5C|CCDS9964.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R5C|CCDS9964.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	6	3	7	17	29	17	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759969823	14	102528273	GA	G	498	PASS	-	-	-	-	-	Del	-	D	102528273	102528283	1	28	487.43	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	6	4	7	25	29	25	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759969893	14	102698844	G	GC	600	PASS	RAGE	CCDS9971.1	r.?	-	-	Ins	intronic	I	102698844	102698849	1	35	536.906	-	-	4	1	1	RAGE|CCDS9971.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAGE|CCDS9971.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	6	6	7	18	30	18	31	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759970021	14	103037949	AT	A	300	PASS	-	-	-	-	-	Del	-	D	103037949	103037956	1	10	271.463	-	-	6	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	4	1	7	1	31	1	31	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759970145	14	103436335	AC	A	420	PASS	ENSG00000198752	CCDS9978.1	r.?	-	-	Del	intronic	D	103436335	103436342	1	18	380.049	-	-	6	1	1	ENSG00000198752|CCDS9978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000198752|CCDS9978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	2	6	2	23	29	23	29	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759970267	14	103813734	CA	C	600	PASS	EIF5	CCDS9980.1	r.?	-	-	Del	downstream	D	103813734	103813744	1	36	542.927	-	-	9	1	1	EIF5|CCDS9980.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EIF5|CCDS9980.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	8	12	8	0	0	./.	5	5	7	7	31	26	31	26	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759970624	14	104724769	GA	G	300	PASS	-	-	-	-	-	Del	-	D	104724769	104724779	1	12	271.463	-	-	9	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	5	2	18	21	18	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759970766	14	105420133	TC	T	300	PASS	AHNAK2	CCDS45177.1	r.1774delG	c.1654delG	p.D552fs*29	Del	frameshift	D	105420133	105420139	1	12	271.463	-	-	5	1	1	AHNAK2|CCDS45177.1|r.1774delG|c.1654delG|p.D552fs*29|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	AHNAK2|CCDS45177.1|r.1774delG|c.1654delG|p.D552fs*29|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	5	3	24	22	24	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759970838	14	105607960	TG	T	300	PASS	JAG2	CCDS9998.1	r.5192delC	c.?	p.?	Del	3'UTR variant	D	105607960	105607964	1	12	268.453	-	-	3	1	1	JAG2|CCDS9998.1|r.5192delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	JAG2|CCDS9998.1|r.5192delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	3	4	20	16	20	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759971033	14	106429002	AT	A	336	PASS	-	-	-	-	-	Del	-	D	106429002	106429012	1	15	325.756	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	5	5	19	17	19	17	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759971068	14	106497385	CA	C	420	PASS	-	-	-	-	-	Del	-	D	106497385	106497394	1	18	380.049	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	2	6	3	17	8	17	8	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759971890	15	20394609	GA	G	323	PASS	-	-	-	-	-	Del	-	D	20394609	20394619	1	16	324.482	-	-	9	1	1	-	-	./.	0	0	0	0	33	18	33	18	0	0	./.	3	3	4	5	33	51	33	51	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759971916	15	20423027	CA	C	300	PASS	-	-	-	-	-	Del	-	D	20423027	20423036	1	10	271.405	-	-	8	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	1	4	2	4	10	29	10	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759972606	15	22421257	AC	A	323	PASS	-	-	-	-	-	Del	-	D	22421257	22421263	1	15	325.687	-	-	5	1	1	-	-	./.	0	0	0	0	23	5	23	5	0	0	./.	2	4	6	4	31	37	31	37	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759972782	15	22838106	CT	C	358	PASS	TUBGCP5	CCDS10008.1	r.?	-	-	Del	intronic	D	22838106	22838116	1	20	378.764	-	-	9	1	1	TUBGCP5|CCDS10008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TUBGCP5|CCDS10008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	3	4	3	6	27	26	27	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759972954	15	23171186	TA	T	329	PASS	-	-	-	-	-	Del	-	D	23171186	23171196	1	16	325.085	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	3	3	4	4	20	21	20	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759973456	15	24677339	C	CA	478	PASS	-	-	-	-	-	Ins	-	I	24677339	24677346	1	28	481.907	-	-	6	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	3	8	6	35	20	36	20	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759973514	15	24824445	GA	G	480	PASS	-	-	-	-	-	Del	-	D	24824445	24824453	1	16	434.249	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	1	7	1	8	18	25	18	25	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759973526	15	24898861	GA	G	269	PASS	-	-	-	-	-	Del	-	D	24898861	24898871	1	6	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	0	5	0	6	5	24	5	24	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759973676	15	25365521	AT	A	447	PASS	-	-	-	-	-	Del	-	D	25365521	25365527	1	28	488.53	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	6	4	6	19	26	19	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974124	15	26667684	G	GC	480	PASS	-	-	-	-	-	Ins	-	I	26667684	26667691	1	21	429.432	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	6	3	6	22	39	22	41	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974181	15	26805993	G	GA	540	PASS	GABRB3	CCDS10019.1	r.?	-	-	Ins	intronic	I	26805993	26806000	1	30	483.111	-	-	6	1	1	GABRB3|CCDS10019.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABRB3|CCDS10019.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	5	5	5	23	37	23	37	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974385	15	27319488	A	AAG	360	PASS	GABRG3	CCDS45195.1	r.?	-	-	Ins	intronic	I	27319488	27319499	2	12	318.462	-	-	5	1	1	GABRG3|CCDS45195.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABRG3|CCDS45195.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	5	19	6	0	0	./.	5	1	6	1	19	22	19	23	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974471	15	27706428	CT	C	300	PASS	GABRG3	CCDS45195.1	r.?	-	-	Del	intronic	D	27706428	27706438	1	12	271.405	-	-	9	1	1	GABRG3|CCDS45195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABRG3|CCDS45195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	2	3	4	3	29	33	29	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974705	15	28489310	CA	C	420	PASS	HERC2	CCDS10021.1	r.?	-	-	Del	intronic	D	28489310	28489320	1	20	379.968	-	-	9	1	1	HERC2|CCDS10021.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HERC2|CCDS10021.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	4	3	7	5	22	25	22	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974872	15	29241682	G	GT	389	PASS	APBA2	CCDS10022.1	r.?	-	-	Ins	intronic	I	29241682	29241690	1	20	374.549	-	-	7	1	1	APBA2|CCDS10022.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	APBA2|CCDS10022.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	3	4	7	6	26	27	26	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974878	15	29258576	TG	T	360	PASS	APBA2	CCDS10022.1	r.?	-	-	Del	intronic	D	29258576	29258583	1	12	325.687	-	-	6	1	1	APBA2|CCDS10022.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APBA2|CCDS10022.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	1	5	1	6	15	27	15	27	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759974926	15	29458781	CA	C	540	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Del	intronic	D	29458781	29458789	1	30	488.53	-	-	7	1	1	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	6	7	20	27	20	27	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975000	15	29667132	GT	G	420	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Del	intronic	D	29667132	29667141	1	20	379.968	-	-	8	1	1	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	4	4	18	24	18	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975072	15	29854946	A	ATG	480	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Ins	intronic	I	29854946	29854958	2	21	423.412	-	-	5	1	-	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	11	21	0	0	./.	2	6	4	8	26	38	26	38	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975167	15	30058438	G	GA	420	PASS	TJP1	CCDS42007.1	r.?	-	-	Ins	intronic	I	30058438	30058446	1	18	375.753	-	-	7	1	1	TJP1|CCDS42007.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TJP1|CCDS42007.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	5	4	5	28	31	29	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975316	15	30778981	GT	G	406	PASS	ENSG00000215302	ENST00000399971	r.?	-	-	Del	downstream	D	30778981	30778991	1	20	379.968	-	-	9	1	1	ENSG00000215302|ENST00000399971|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000215302|ENST00000399971|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	7	16	7	0	0	./.	4	3	6	7	24	34	24	34	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975432	15	31293355	CT	C	300	PASS	TRPM1	CCDS10024.2	r.5595delA	c.?	p.?	Del	3'UTR variant	D	31293355	31293363	1	12	271.405	-	-	7	1	1	TRPM1|CCDS10024.2|r.5595delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TRPM1|CCDS10024.2|r.5595delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	6	5	26	30	26	30	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975563	15	31679727	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	31679727	31679734	1	12	268.395	-	-	6	1	1	-	-	./.	0	0	0	0	17	7	18	7	0	0	./.	2	3	2	3	19	20	19	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975611	15	31791387	AT	A	420	PASS	OTUD7A	CCDS10026.1	r.?	-	-	Del	intronic	D	31791387	31791394	1	18	379.968	-	-	6	1	1	OTUD7A|CCDS10026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTUD7A|CCDS10026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	5	3	6	28	30	28	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759975758	15	32164727	AT	A	300	PASS	-	-	-	-	-	Del	-	D	32164727	32164735	1	10	267.793	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	1	5	17	36	17	36	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759976028	15	33154786	G	GT	480	PASS	FMN1	CCDS45209.1	r.?	-	-	Ins	intronic	I	33154786	33154793	1	21	429.432	-	-	6	1	1	FMN1|CCDS45209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN1|CCDS45209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	2	7	4	31	16	31	16	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759976119	15	33372079	T	TA	420	PASS	FMN1	ENST00000414268	r.?	-	-	Ins	intronic	I	33372079	33372086	1	18	375.753	-	-	6	1	1	FMN1|ENST00000414268|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN1|ENST00000414268|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	6	19	6	0	0	./.	5	2	5	5	26	33	26	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759976232	15	33677492	CT	C	480	PASS	RYR3	CCDS45210.1	r.?	-	-	Del	intronic	D	33677492	33677502	1	21	434.249	-	-	9	1	1	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	2	6	3	25	24	25	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759976482	15	34272224	G	GA	480	PASS	CHRM5	CCDS10031.1	r.?	-	-	Ins	intronic	I	34272224	34272233	1	21	429.432	-	-	8	1	1	CHRM5|CCDS10031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CHRM5|CCDS10031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	15	0	0	./.	2	6	4	6	29	21	29	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977023	15	35731252	CT	C	300	PASS	ATPBD4	CCDS10043.1	r.?	-	-	Del	intronic	D	35731252	35731258	1	12	271.405	-	-	5	1	1	ATPBD4|CCDS10043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATPBD4|CCDS10043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	2	4	3	18	15	18	15	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977063	15	35879061	AT	A	420	PASS	AC068867.1	ENST00000501169	r.?	-	-	Del	intronic	D	35879061	35879071	1	8	378.161	-	-	9	1	1	AC068867.1|ENST00000501169|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC068867.1|ENST00000501169|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	0	7	0	9	4	24	4	24	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977108	15	36064697	A	AT	360	PASS	AC068867.1	ENST00000501169	r.?	-	-	Ins	intronic	I	36064697	36064705	1	12	322.074	-	-	7	1	1	AC068867.1|ENST00000501169|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC068867.1|ENST00000501169|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	1	6	1	39	21	40	22	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977333	15	36822793	TA	T	300	PASS	-	-	-	-	-	Del	-	D	36822793	36822802	1	12	268.395	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	3	7	29	27	29	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977530	15	37298336	AT	A	360	PASS	MEIS2	CCDS45217.1	r.?	-	-	Del	intronic	D	37298336	37298345	1	15	325.687	-	-	8	1	1	MEIS2|CCDS45217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEIS2|CCDS45217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	4	2	4	25	19	25	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977579	15	37466893	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	37466893	37466901	1	18	375.753	-	-	7	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	2	5	2	6	19	29	19	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977586	15	37513087	GA	G	360	PASS	-	-	-	-	-	Del	-	D	37513087	37513096	1	16	325.687	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	3	4	30	25	30	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977669	15	37830948	CA	C	540	PASS	-	-	-	-	-	Del	-	D	37830948	37830958	1	24	488.53	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	2	8	4	28	19	28	19	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977701	15	37910002	AT	A	360	PASS	-	-	-	-	-	Del	-	D	37910002	37910010	1	12	325.687	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	5	2	6	23	23	23	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977743	15	38113780	CA	C	420	PASS	-	-	-	-	-	Del	-	D	38113780	38113790	1	14	379.968	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	6	1	7	19	31	19	31	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977750	15	38128522	TA	T	300	PASS	-	-	-	-	-	Del	-	D	38128522	38128530	1	10	271.405	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	5	1	18	7	18	7	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977780	15	38205744	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	38205744	38205754	1	12	319.064	-	-	9	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	1	5	2	7	24	27	24	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759977929	15	38648129	GA	G	300	PASS	SPRED1	CCDS32193.1	r.5935delA	c.?	p.?	Del	3'UTR variant	D	38648129	38648139	1	12	271.405	-	-	9	1	1	SPRED1|CCDS32193.1|r.5935delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SPRED1|CCDS32193.1|r.5935delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	3	3	14	30	14	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978417	15	40069135	CT	C	360	PASS	FSIP1	CCDS10050.1	r.?	-	-	Del	intronic	D	40069135	40069145	1	16	325.687	-	-	9	1	1	FSIP1|CCDS10050.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FSIP1|CCDS10050.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	3	4	4	28	23	28	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978628	15	40713739	GT	G	300	PASS	IVD	CCDS10057.1	r.?	-	-	Del	downstream	D	40713739	40713746	1	12	271.405	-	-	6	1	1	IVD|CCDS10057.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IVD|ENST00000473112|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	3	2	4	3	22	26	22	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978701	15	40864278	CA	C	360	PASS	RPUSD2	CCDS10061.1	r.?	-	-	Del	intronic	D	40864278	40864286	1	16	325.687	-	-	7	1	1	RPUSD2|CCDS10061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPUSD2|CCDS10061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	3	4	3	21	21	21	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978829	15	41119955	CA	C	420	PASS	PPP1R14D	CCDS45230.1	r.?	-	-	Del	intronic	D	41119955	41119965	1	20	379.968	-	-	9	1	1	PPP1R14D|CCDS45230.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R14D|CCDS45230.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	3	6	4	18	20	18	20	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978892	15	41258355	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	41258355	41258363	1	18	375.151	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	5	3	7	22	30	23	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978903	15	41269834	G	GA	360	PASS	INO80	CCDS10071.1	r.?	-	-	Ins	downstream	I	41269834	41269841	1	16	322.074	-	-	6	1	1	INO80|CCDS10071.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	INO80|CCDS10071.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	5	4	28	26	28	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978907	15	41278104	TA	T	300	PASS	INO80	CCDS10071.1	r.?	-	-	Del	intronic	D	41278104	41278114	1	12	271.405	-	-	9	1	1	INO80|CCDS10071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INO80|CCDS10071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	6	4	21	25	21	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978927	15	41330140	CA	C	300	PASS	INO80	CCDS10071.1	r.?	-	-	Del	intronic	D	41330140	41330150	1	12	271.405	-	-	9	1	1	INO80|CCDS10071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INO80|CCDS10071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	2	3	20	31	20	31	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759978951	15	41385622	C	CA	300	PASS	INO80	CCDS10071.1	r.?	-	-	Ins	intronic	I	41385622	41385631	1	12	266.589	-	-	8	1	1	INO80|CCDS10071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INO80|CCDS10071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	12	0	0	./.	2	3	3	7	29	43	29	45	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979166	15	41775821	T	TC	540	PASS	RTF1	CCDS32200.2	r.?	-	-	Ins	downstream	I	41775821	41775824	1	30	482.509	-	-	2	1	1	RTF1|CCDS32200.2|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	RTF1|CCDS32200.2|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	6	7	6	7	0	0	./.	4	5	9	7	29	26	29	26	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979221	15	41906225	AT	A	300	PASS	-	-	-	-	-	Del	-	D	41906225	41906232	1	10	270.803	-	-	6	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	2	4	12	26	12	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979249	15	41968863	GT	G	300	PASS	MGA	ENST00000219905	r.?	-	-	Del	intronic	D	41968863	41968871	1	12	271.405	-	-	7	1	1	MGA|ENST00000219905|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGA|ENST00000219905|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	2	7	10	28	10	28	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979360	15	42323334	TA	T	360	PASS	PLA2G4E	ENST00000399518	r.?	-	-	Del	intronic	D	42323334	42323344	1	15	325.687	-	-	9	1	1	PLA2G4E|ENST00000399518|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLA2G4E|ENST00000399518|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	2	4	5	7	32	28	32	28	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979509	15	42800929	CT	C	360	PASS	SNAP23	CCDS10087.1	r.?	-	-	Del	intronic	D	42800929	42800939	1	16	325.687	-	-	9	1	1	SNAP23|CCDS10087.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SNAP23|CCDS10087.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	3	4	4	15	22	15	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979619	15	43179928	CT	C	600	PASS	TTBK2	CCDS42029.1	r.?	-	-	Del	intronic	D	43179928	43179937	1	32	542.811	-	-	8	1	1	TTBK2|CCDS42029.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TTBK2|CCDS42029.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	7	3	8	3	32	30	32	30	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759979961	15	44371446	CA	C	360	PASS	FRMD5	CCDS10107.2	r.?	-	-	Del	intronic	D	44371446	44371456	1	15	325.085	-	-	9	1	1	FRMD5|CCDS10107.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD5|CCDS10107.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	3	5	24	31	24	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980117	15	44765502	C	CT	360	PASS	CTDSPL2	CCDS10110.1	r.?	-	-	Ins	intronic	I	44765502	44765512	1	15	319.064	-	-	9	1	1	CTDSPL2|CCDS10110.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTDSPL2|CCDS10110.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	6	3	25	30	25	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980135	15	44826254	A	AT	300	PASS	EIF3J	CCDS10111.1	r.?	-	-	Ins	upstream	I	44826254	44826264	1	12	268.395	-	-	9	1	1	EIF3J|CCDS10111.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	EIF3J|CCDS10111.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	14	13	15	0	0	./.	2	3	4	6	29	26	29	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980569	15	46421892	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	46421892	46421901	1	12	268.395	-	-	8	1	1	-	-	./.	0	0	0	0	18	14	19	14	0	0	./.	3	2	5	3	30	29	30	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980579	15	46437556	GT	G	360	PASS	-	-	-	-	-	Del	-	D	46437556	46437561	1	15	325.687	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	5	4	31	13	31	13	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980938	15	47681874	GA	G	360	PASS	-	-	-	-	-	Del	-	D	47681874	47681882	1	16	325.687	-	-	7	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	3	3	4	4	30	24	30	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980962	15	47741954	AT	A	360	PASS	-	-	-	-	-	Del	-	D	47741954	47741961	1	12	325.687	-	-	6	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	1	5	2	5	10	29	10	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759980984	15	47817113	CA	C	420	PASS	-	-	-	-	-	Del	-	D	47817113	47817121	1	20	379.968	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	5	9	34	32	34	32	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759981000	15	47878969	AC	A	300	PASS	-	-	-	-	-	Del	-	D	47878969	47878976	1	12	271.405	-	-	6	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	2	3	2	4	25	19	25	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759981014	15	47919013	GA	G	360	PASS	-	-	-	-	-	Del	-	D	47919013	47919023	1	16	322.676	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	5	4	23	32	23	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759981190	15	48752699	GA	G	300	PASS	FBN1	CCDS32232.1	r.?	-	-	Del	intronic	D	48752699	48752707	1	12	271.405	-	-	7	1	1	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	4	3	32	21	32	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759981658	15	50465069	GC	G	295	PASS	-	-	-	-	-	Del	-	D	50465069	50465074	1	16	320.268	-	-	4	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	3	5	26	29	26	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982211	15	51706451	TA	T	300	PASS	-	-	-	-	-	Del	-	D	51706451	51706460	1	10	268.997	-	-	8	1	1	-	-	./.	0	0	0	0	13	3	13	3	0	0	./.	1	4	5	4	18	36	18	36	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982243	15	51869161	TA	T	360	PASS	DMXL2	CCDS10141.1	r.?	-	-	Del	intronic	D	51869161	51869166	1	16	325.687	-	-	4	1	1	DMXL2|CCDS10141.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMXL2|CCDS10141.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	5	5	19	28	19	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982584	15	52828042	CA	C	300	PASS	-	-	-	-	-	Del	-	D	52828042	52828050	1	10	271.405	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	1	7	11	26	11	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982603	15	52871982	AT	A	540	PASS	KIAA1370	CCDS45263.1	r.?	-	-	Del	downstream	D	52871982	52871992	1	28	486.122	-	-	9	1	1	KIAA1370|CCDS45263.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KIAA1370|CCDS45263.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	3	6	4	7	22	29	22	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982664	15	53102827	AT	A	360	PASS	-	-	-	-	-	Del	-	D	53102827	53102837	1	7	325.687	-	-	9	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	6	0	6	1	26	29	26	29	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982698	15	53211849	TA	T	300	PASS	-	-	-	-	-	Del	-	D	53211849	53211858	1	12	271.405	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	3	2	23	12	23	12	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982759	15	53421265	AT	A	360	PASS	-	-	-	-	-	Del	-	D	53421265	53421274	1	15	325.687	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	7	3	33	24	33	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982829	15	53670713	TA	T	360	PASS	-	-	-	-	-	Del	-	D	53670713	53670722	1	7	325.085	-	-	8	1	1	-	-	./.	0	0	0	0	20	5	20	5	0	0	./.	0	6	1	7	9	19	9	19	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759982934	15	54050736	CA	C	300	PASS	WDR72	CCDS10151.1	r.?	-	-	Del	intronic	D	54050736	54050746	1	6	271.405	-	-	9	1	1	WDR72|CCDS10151.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	WDR72|CCDS10151.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	0	5	0	5	22	16	22	16	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983054	15	54393407	CT	C	300	PASS	UNC13C	CCDS45264.1	r.?	-	-	Del	intronic	D	54393407	54393416	1	12	268.997	-	-	8	1	1	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	2	3	11	7	11	7	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983087	15	54507194	A	AT	360	PASS	UNC13C	CCDS45264.1	r.?	-	-	Ins	intronic	I	54507194	54507201	1	16	322.074	-	-	6	1	1	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	3	3	3	26	17	26	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983195	15	54907743	CT	C	300	PASS	UNC13C	CCDS45264.1	r.?	-	-	Del	intronic	D	54907743	54907751	1	10	271.405	-	-	7	1	1	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	1	6	18	34	18	34	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983226	15	54968581	GA	G	360	PASS	-	-	-	-	-	Del	-	D	54968581	54968589	1	7	325.687	-	-	7	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	0	6	0	7	3	22	3	22	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983293	15	55071581	CT	C	300	PASS	-	-	-	-	-	Del	-	D	55071581	55071590	1	6	271.405	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	5	0	5	1	20	2	20	2	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983346	15	55237521	T	TA	257	PASS	-	-	-	-	-	Ins	-	I	55237521	55237529	1	12	268.395	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	3	2	5	4	28	37	28	37	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983453	15	55578708	G	GA	300	PASS	RAB27A	CCDS10153.1	r.?	-	-	Ins	intronic	I	55578708	55578714	1	10	268.395	-	-	5	1	1	RAB27A|CCDS10153.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RAB27A|CCDS10153.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	4	1	9	1	32	26	32	27	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983502	15	55697560	C	CA	600	PASS	CCPG1	CCDS42039.1	r.?	-	-	Ins	intronic	I	55697560	55697570	1	32	530.168	-	-	9	1	1	CCPG1|CCDS42039.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCPG1|CCDS42039.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	8	4	9	0	0	./.	7	3	8	4	28	26	28	26	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983554	15	55810494	CT	C	480	PASS	-	-	-	-	-	Del	-	D	55810494	55810504	1	25	434.249	-	-	9	1	-	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	4	4	4	36	20	36	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983567	15	55844003	TA	T	300	PASS	PYGO1	CCDS10155.1	r.?	-	-	Del	intronic	D	55844003	55844012	1	12	271.405	-	-	8	1	1	PYGO1|CCDS10155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PYGO1|CCDS10155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	4	4	22	14	22	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983744	15	56224361	TAGTG	T	474	PASS	NEDD4	CCDS45265.1	r.?	-	-	Del	intronic	D	56224361	56224373	4	25	432.443	-	-	2	1	1	NEDD4|CCDS45265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEDD4|CCDS45265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	4	4	4	26	24	26	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983846	15	56495230	CA	C	360	PASS	RFX7	ENST00000423270	r.?	-	-	Del	intronic	D	56495230	56495239	1	16	325.687	-	-	8	1	1	RFX7|ENST00000423270|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX7|ENST00000423270|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	3	3	3	25	26	25	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983870	15	56574301	GA	G	300	PASS	-	-	-	-	-	Del	-	D	56574301	56574307	1	6	271.405	-	-	5	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	0	5	0	6	6	17	6	17	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983900	15	56656965	A	AT	449	PASS	TEX9	CCDS10157.1	r.?	-	-	Ins	upstream	I	56656965	56656971	1	21	429.432	-	-	5	1	1	TEX9|CCDS10157.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TEX9|CCDS10157.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	13	12	13	0	0	./.	6	2	6	2	37	24	37	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759983969	15	56924284	AT	A	300	PASS	ZNF280D	CCDS32245.1	r.2568delA	c.2351delA	p.N784fs*20	Del	frameshift	D	56924284	56924292	1	6	271.405	-	-	7	1	1	ZNF280D|CCDS32245.1|r.2568delA|c.2351delA|p.N784fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZNF280D|CCDS32245.1|r.2568delA|c.2351delA|p.N784fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	18	7	18	0	0	./.	0	5	0	10	15	36	15	36	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984197	15	57617445	AT	A	420	PASS	-	-	-	-	-	Del	-	D	57617445	57617453	1	18	379.968	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	2	5	3	34	22	34	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984360	15	58106735	TG	T	600	PASS	-	-	-	-	-	Del	-	D	58106735	58106742	1	32	542.209	-	-	6	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	3	7	4	7	17	28	17	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984433	15	58426649	AT	A	420	PASS	AQP9	CCDS10165.1	r.?	-	-	Del	upstream	D	58426649	58426657	1	20	379.968	-	-	7	1	1	AQP9|CCDS10165.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AQP9|CCDS10165.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	7	10	7	0	0	./.	3	4	5	5	24	14	24	14	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984455	15	58515041	CAT	C	720	PASS	-	-	-	-	-	Del	-	D	58515041	58515045	2	45	651.373	-	-	1	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	8	4	8	5	29	25	29	25	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984531	15	58775953	CT	C	600	PASS	LIPC	CCDS10166.1	r.?	-	-	Del	intronic	D	58775953	58775960	1	35	542.811	-	-	6	1	1	LIPC|CCDS10166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIPC|CCDS10166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	6	4	8	5	31	36	31	36	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984576	15	58945072	AT	A	600	PASS	ADAM10	CCDS10167.1	r.?	-	-	Del	intronic	D	58945072	58945080	1	36	535.586	-	-	7	1	1	ADAM10|CCDS10167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM10|CCDS10167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	5	16	5	0	0	./.	5	5	6	6	26	25	26	25	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984599	15	59022157	TA	T	300	PASS	ADAM10	CCDS10167.1	r.?	-	-	Del	intronic	D	59022157	59022167	1	10	270.803	-	-	9	1	-	ADAM10|CCDS10167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM10|CCDS10167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	5	5	36	33	36	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759984869	15	59705954	TA	T	420	PASS	-	-	-	-	-	Del	-	D	59705954	59705963	1	20	379.366	-	-	8	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	3	5	4	24	25	24	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985144	15	60480261	TA	T	480	PASS	-	-	-	-	-	Del	-	D	60480261	60480271	1	24	434.249	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	3	6	5	31	31	31	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985257	15	60787280	C	CA	360	PASS	RORA	CCDS10177.1	r.4046_4047insu	c.?	p.?	Ins	3'UTR variant	I	60787280	60787288	1	16	322.074	-	-	7	1	-	RORA|CCDS10177.1|r.4046_4047insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	RORA|CCDS10177.1|r.4046_4047insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	15	15	15	15	0	0	./.	3	3	5	3	21	19	21	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985290	15	60890936	CT	C	360	PASS	RORA	CCDS10177.1	r.?	-	-	Del	intronic	D	60890936	60890941	1	15	325.687	-	-	4	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	4	2	5	3	33	7	33	7	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985355	15	61113159	AC	A	480	PASS	RORA	CCDS10177.1	r.?	-	-	Del	intronic	D	61113159	61113166	1	24	430.636	-	-	6	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	15	3	15	0	0	./.	5	3	6	5	18	28	18	28	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985389	15	61204482	TG	T	420	PASS	RORA	CCDS10177.1	r.?	-	-	Del	intronic	D	61204482	61204490	1	20	378.161	-	-	7	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	4	2	4	25	11	25	11	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985562	15	61653955	CT	C	314	PASS	-	-	-	-	-	Del	-	D	61653955	61653964	1	15	325.687	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	2	6	29	32	29	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985610	15	61795106	TA	T	360	PASS	-	-	-	-	-	Del	-	D	61795106	61795116	1	16	325.687	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	3	4	5	15	38	15	38	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985656	15	61954654	ATC	A	540	PASS	-	-	-	-	-	Del	-	D	61954654	61954665	2	30	487.326	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	5	4	7	20	32	20	32	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985663	15	62001203	AT	A	420	PASS	-	-	-	-	-	Del	-	D	62001203	62001205	1	20	379.366	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	4	5	24	17	24	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985678	15	62061754	GA	G	300	PASS	-	-	-	-	-	Del	-	D	62061754	62061763	1	6	271.405	-	-	8	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	5	0	6	0	24	4	24	4	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759985754	15	62319445	TA	T	480	PASS	VPS13C	CCDS32257.1	r.?	-	-	Del	intronic	D	62319445	62319455	1	24	434.249	-	-	9	1	1	VPS13C|CCDS32257.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13C|CCDS32257.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	5	3	8	6	38	21	38	21	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759986094	15	63252603	GT	G	269	PASS	-	-	-	-	-	Del	-	D	63252603	63252611	1	12	271.405	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	4	5	30	24	30	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759986558	15	64434536	AG	A	360	PASS	SNX1	CCDS32266.1	r.6325delG	c.?	p.?	Del	3'UTR variant	D	64434536	64434538	1	16	325.085	-	-	1	1	1	SNX1|CCDS32266.1|r.6325delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SNX1|CCDS32266.1|r.6325delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	3	4	23	33	23	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759986597	15	64558710	GA	G	300	PASS	CSNK1G1	CCDS10192.2	r.?	-	-	Del	intronic	D	64558710	64558720	1	12	271.405	-	-	9	1	1	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	4	15	4	0	0	./.	3	2	3	3	26	20	26	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759986705	15	64750423	GA	G	540	PASS	TRIP4	CCDS10194.1	r.?	-	-	Del	downstream	D	64750423	64750433	1	30	488.53	-	-	9	1	1	TRIP4|CCDS10194.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF609|ENST00000416172|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	5	5	5	0	0	./.	4	5	6	7	30	22	30	22	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759986908	15	65163740	CT	C	300	PASS	PLEKHO2	CCDS10196.1	r.?	-	-	Del	downstream	D	65163740	65163750	1	6	271.405	-	-	9	1	1	PLEKHO2|CCDS10196.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000249240|ENST00000437723|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	2	12	2	0	0	./.	5	0	9	0	39	1	39	1	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987099	15	65626149	TG	T	360	PASS	IGDCC3	CCDS10205.1	r.?	-	-	Del	intronic	D	65626149	65626158	1	12	325.687	-	-	8	1	1	IGDCC3|CCDS10205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGDCC3|CCDS10205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	9	2	9	0	0	./.	5	1	6	1	21	18	21	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987187	15	65809640	TG	T	360	PASS	DPP8	CCDS10207.1	r.?	-	-	Del	upstream	D	65809640	65809648	1	15	325.085	-	-	7	1	1	DPP8|CCDS10207.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DPP8|CCDS10207.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	2	4	2	26	21	26	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987228	15	65942643	CA	C	780	PASS	SLC24A1	CCDS45284.1	r.?	-	-	Del	intronic	D	65942643	65942651	1	54	705.654	-	-	7	1	1	SLC24A1|CCDS45284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A1|CCDS45284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	8	5	9	7	41	33	41	33	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987284	15	66087162	CT	C	300	PASS	DENND4A	CCDS45285.1	r.?	-	-	Del	upstream	D	66087162	66087172	1	10	270.201	-	-	9	1	1	DENND4A|CCDS45285.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DENND4A|CCDS45285.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	4	9	4	0	0	./.	1	4	1	4	16	30	16	30	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987357	15	66327381	TA	T	360	PASS	MEGF11	CCDS10213.2	r.?	-	-	Del	intronic	D	66327381	66327391	1	15	325.687	-	-	9	1	1	MEGF11|CCDS10213.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEGF11|CCDS10213.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	2	4	3	6	19	29	19	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987418	15	66500258	T	TA	360	PASS	MEGF11	CCDS10213.2	r.?	-	-	Ins	intronic	I	66500258	66500267	1	15	320.87	-	-	8	1	1	MEGF11|CCDS10213.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MEGF11|CCDS10213.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	12	10	0	0	./.	2	4	3	7	13	36	13	36	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759987578	15	66839271	TA	T	358	PASS	ZWILCH	CCDS10219.1	r.?	-	-	Del	intronic	D	66839271	66839281	1	20	379.968	-	-	9	1	1	ZWILCH|CCDS10219.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ZWILCH|CCDS10219.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	4	3	6	15	27	15	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988058	15	68213227	CT	C	480	PASS	-	-	-	-	-	Del	-	D	68213227	68213237	1	16	430.636	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	1	7	2	10	18	37	18	37	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988163	15	68530460	CA	C	360	PASS	-	-	-	-	-	Del	-	D	68530460	68530470	1	12	323.278	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	5	1	6	20	26	20	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988230	15	68682197	G	GT	600	PASS	ITGA11	CCDS45291.1	r.?	-	-	Ins	intronic	I	68682197	68682204	1	27	536.79	-	-	6	1	1	ITGA11|CCDS45291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITGA11|CCDS45291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	8	2	9	4	40	43	40	43	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988505	15	69543369	TA	T	600	PASS	GLCE	CCDS32277.1	r.?	-	-	Del	intronic	D	69543369	69543377	1	36	541.607	-	-	7	1	1	GLCE|CCDS32277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GLCE|CCDS32277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	5	5	6	7	30	17	30	17	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988615	15	69831085	AG	A	360	PASS	-	-	-	-	-	Del	-	D	69831085	69831093	1	15	325.687	-	-	7	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	4	2	4	2	26	28	26	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988772	15	70446516	CG	C	480	PASS	-	-	-	-	-	Del	-	D	70446516	70446524	1	25	433.045	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	5	7	25	29	25	29	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759988781	15	70499424	TA	T	360	PASS	-	-	-	-	-	Del	-	D	70499424	70499434	1	16	325.687	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	3	4	24	24	24	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989044	15	71422700	A	AT	300	PASS	THSD4	CCDS10238.2	r.?	-	-	Ins	intronic	I	71422700	71422707	1	12	265.987	-	-	6	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	3	2	4	4	16	30	16	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989529	15	72808137	CAT	C	300	PASS	MIR630	CCDS10244.1	r.?	-	-	Del	intronic	D	72808137	72808149	2	10	271.405	-	-	5	1	1	MIR630|CCDS10244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR630|CCDS10244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	4	1	4	1	19	22	19	22	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989649	15	73201927	CT	C	300	PASS	-	-	-	-	-	Del	-	D	73201927	73201937	1	6	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	5	0	5	1	33	18	33	18	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989739	15	73532545	AT	A	300	PASS	NEO1	CCDS10247.1	r.?	-	-	Del	intronic	D	73532545	73532555	1	12	271.405	-	-	9	1	1	NEO1|CCDS10247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEO1|CCDS10247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	2	3	23	17	23	17	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989794	15	73778447	CT	C	300	PASS	C15orf60	CCDS45296.1	r.?	-	-	Del	intronic	D	73778447	73778457	1	12	265.987	-	-	9	1	1	C15orf60|CCDS45296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C15orf60|CCDS45296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	6	2	22	22	22	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989944	15	74251747	CT	C	300	PASS	-	-	-	-	-	Del	-	D	74251747	74251756	1	12	270.201	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	3	5	33	34	33	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759989974	15	74437359	GT	G	300	PASS	-	-	-	-	-	Del	-	D	74437359	74437369	1	10	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	1	4	1	4	5	33	5	33	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990076	15	74796439	TA	T	389	PASS	-	-	-	-	-	Del	-	D	74796439	74796449	1	18	379.968	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	5	3	6	14	25	14	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990154	15	74982333	TA	T	276	PASS	EDC3	CCDS10267.1	r.?	-	-	Del	intronic	D	74982333	74982343	1	12	271.405	-	-	9	1	1	EDC3|CCDS10267.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EDC3|CCDS10267.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	2	5	15	29	15	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990277	15	75235629	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	75235629	75235636	1	18	368.529	-	-	6	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	5	2	5	6	36	38	37	38	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990278	15	75236013	GA	G	480	PASS	-	-	-	-	-	Del	-	D	75236013	75236021	1	21	432.443	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	6	4	8	29	34	29	34	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990381	15	75468787	CT	C	300	PASS	-	-	-	-	-	Del	-	D	75468787	75468789	1	12	271.405	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	6	4	20	16	20	16	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990394	15	75511360	GC	G	414	PASS	-	-	-	-	-	Del	-	D	75511360	75511367	1	18	377.559	-	-	6	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	2	5	3	7	26	33	26	33	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990395	15	75525021	C	CA	300	PASS	ENSG00000235063	ENST00000418643	r.?	-	-	Ins	upstream	I	75525021	75525022	1	12	267.793	-	-	0	1	1	ENSG00000235063|ENST00000418643|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000235063|ENST00000418643|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	3	4	30	27	31	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990530	15	75970859	AT	A	300	PASS	CSPG4	CCDS10284.1	r.?	-	-	Del	intronic	D	75970859	75970869	1	10	271.405	-	-	9	1	1	CSPG4|CCDS10284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000203392|ENST00000435356|r.189delU|c.20delT|p.Y10fs*4|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	6	3	36	6	36	6	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990795	15	76806722	CA	C	300	PASS	SCAPER	ENST00000303521	r.?	-	-	Del	intronic	D	76806722	76806729	1	12	271.405	-	-	6	1	1	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	4	4	17	34	17	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990903	15	77190211	C	CT	480	PASS	SCAPER	ENST00000303521	r.?	-	-	Ins	intronic	I	77190211	77190221	1	24	427.626	-	-	9	1	1	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	5	4	6	27	25	27	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759990997	15	77578058	AT	A	277	PASS	-	-	-	-	-	Del	-	D	77578058	77578068	1	12	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	2	3	27	19	27	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991036	15	77855080	T	TG	600	PASS	-	-	-	-	-	Ins	-	I	77855080	77855089	1	35	528.964	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	6	5	6	29	32	29	32	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991232	15	78403648	AG	A	360	PASS	CIB2	CCDS10296.1	r.?	-	-	Del	intronic	D	78403648	78403654	1	15	325.687	-	-	5	1	1	CIB2|CCDS10296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CIB2|CCDS10296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	2	4	3	4	27	27	27	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991327	15	78603946	C	CAG	360	PASS	-	-	-	-	-	Ins	-	I	78603946	78603957	2	12	318.462	-	-	5	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	1	5	2	42	24	42	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991338	15	78636315	AT	A	420	PASS	CRABP1	CCDS10301.1	r.?	-	-	Del	intronic	D	78636315	78636324	1	18	379.968	-	-	8	1	1	CRABP1|CCDS10301.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRABP1|CCDS10301.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	5	3	8	22	23	22	23	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991496	15	79021115	CT	C	287	PASS	-	-	-	-	-	Del	-	D	79021115	79021124	1	12	325.084	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	5	1	6	1	28	27	28	27	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991578	15	79171537	ACT	A	420	PASS	MORF4	CCDS10307.1	r.?	-	-	Del	intronic	D	79171537	79171550	2	20	378.161	-	-	6	1	1	MORF4|CCDS10307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MORF4|CCDS10307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	4	6	6	22	27	22	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991637	15	79337188	AT	A	420	PASS	RASGRF1	CCDS42065.1	r.?	-	-	Del	intronic	D	79337188	79337198	1	18	379.968	-	-	9	1	1	RASGRF1|CCDS42065.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RASGRF1|CCDS42065.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	5	2	7	3	28	30	28	30	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991658	15	79418316	GA	G	720	PASS	-	-	-	-	-	Del	-	D	79418316	79418324	1	45	649.567	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	8	9	10	23	29	23	29	9	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759991855	15	80082204	CA	C	300	PASS	-	-	-	-	-	Del	-	D	80082204	80082214	1	12	269.599	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	5	2	24	30	24	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992204	15	81072684	CAG	C	300	PASS	KIAA1199	CCDS10315.1	r.?	-	-	Del	intronic	D	81072684	81072691	2	12	271.405	-	-	3	1	1	KIAA1199|CCDS10315.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1199|CCDS10315.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	4	3	27	35	27	35	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992246	15	81228064	GT	G	300	PASS	KIAA1199	CCDS10315.1	r.?	-	-	Del	intronic	D	81228064	81228073	1	10	271.405	-	-	8	1	-	KIAA1199|CCDS10315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1199|CCDS10315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	5	2	25	26	25	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992281	15	81352057	TA	T	300	PASS	-	-	-	-	-	Del	-	D	81352057	81352067	1	6	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	0	5	0	5	4	18	4	18	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992395	15	81876881	CA	C	569	PASS	-	-	-	-	-	Del	-	D	81876881	81876889	1	32	542.811	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	7	3	9	3	34	22	34	22	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992405	15	81933060	CA	C	480	PASS	-	-	-	-	-	Del	-	D	81933060	81933069	1	24	434.249	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	3	5	3	5	28	21	28	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992460	15	82158549	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	82158549	82158558	2	16	325.687	-	-	4	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	3	3	3	3	18	12	18	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992509	15	82326979	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	82326979	82326986	1	10	268.395	-	-	6	1	1	-	-	./.	0	0	0	0	9	8	9	9	0	0	./.	4	1	6	1	24	11	24	11	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992710	15	83481453	CT	C	360	PASS	WHAMM	CCDS45333.1	r.?	-	-	Del	intronic	D	83481453	83481463	1	15	322.074	-	-	9	1	1	WHAMM|CCDS45333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WHAMM|CCDS45333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	4	15	4	0	0	./.	2	4	4	4	14	16	14	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992759	15	83640244	AT	A	300	PASS	AC022558.1	ENST00000500334	r.?	-	-	Del	intronic	D	83640244	83640254	1	12	271.405	-	-	9	1	1	AC022558.1|ENST00000500334|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC022558.1|ENST00000500334|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	3	4	15	19	15	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992764	15	83645918	GA	G	720	PASS	AC022558.1	ENST00000500334	r.?	-	-	Del	intronic	D	83645918	83645928	1	49	651.373	-	-	9	1	1	AC022558.1|ENST00000500334|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC022558.1|ENST00000500334|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	11	23	11	0	0	./.	6	6	6	7	30	37	30	37	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992902	15	84227916	GT	G	360	PASS	SH3GL3	CCDS10325.2	r.?	-	-	Del	intronic	D	84227916	84227924	1	16	325.687	-	-	7	1	1	SH3GL3|CCDS10325.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3GL3|CCDS10325.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	3	3	5	27	29	27	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992915	15	84278606	GGA	G	300	PASS	SH3GL3	CCDS10325.2	r.?	-	-	Del	intronic	D	84278606	84278623	2	12	271.405	-	-	8	1	1	SH3GL3|CCDS10325.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3GL3|CCDS10325.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	3	3	29	19	29	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992961	15	84422033	A	AT	600	PASS	ADAMTSL3	CCDS10326.1	r.?	-	-	Ins	intronic	I	84422033	84422041	1	35	536.79	-	-	7	1	1	ADAMTSL3|CCDS10326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTSL3|CCDS10326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	6	4	8	6	33	31	33	31	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759992991	15	84482169	GA	G	300	PASS	ADAMTSL3	CCDS10326.1	r.?	-	-	Del	intronic	D	84482169	84482179	1	10	270.803	-	-	9	1	1	ADAMTSL3|CCDS10326.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTSL3|CCDS10326.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	1	4	1	6	30	20	30	20	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993141	15	85080122	CT	C	385	PASS	-	-	-	-	-	Del	-	D	85080122	85080129	1	18	379.366	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	2	7	5	25	19	25	19	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993219	15	85238021	C	CA	300	PASS	SEC11B	CCDS45340.1	r.?	-	-	Ins	intronic	I	85238021	85238031	1	12	261.17	-	-	9	1	1	SEC11B|CCDS45340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEC11B|CCDS45340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	12	0	0	./.	3	2	4	2	15	28	15	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993283	15	85347259	AT	A	360	PASS	ZNF592	CCDS32317.1	r.5462delU	c.?	p.?	Del	3'UTR variant	D	85347259	85347266	1	16	324.482	-	-	6	1	1	ZNF592|CCDS32317.1|r.5462delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ZNF592|CCDS32317.1|r.5462delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	16	11	16	0	0	./.	3	3	5	3	19	9	19	9	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993351	15	85468667	TA	T	329	PASS	SLC28A1	CCDS10334.1	r.?	-	-	Del	intronic	D	85468667	85468673	1	15	325.687	-	-	5	1	1	SLC28A1|CCDS10334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC28A1|CCDS10334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	4	2	5	17	11	17	11	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993410	15	85593714	AT	A	600	PASS	PDE8A	CCDS10336.1	r.?	-	-	Del	intronic	D	85593714	85593722	1	27	542.811	-	-	7	1	1	PDE8A|CCDS10336.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE8A|CCDS10336.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	8	2	11	2	27	10	27	10	11	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993662	15	86195534	CT	C	420	PASS	AKAP13	CCDS32320.1	r.?	-	-	Del	intronic	D	86195534	86195542	1	14	379.968	-	-	7	1	1	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	1	10	3	28	21	28	21	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993687	15	86240799	CA	C	300	PASS	AKAP13	CCDS32320.1	r.?	-	-	Del	intronic	D	86240799	86240807	1	12	271.405	-	-	7	1	1	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	5	3	24	22	24	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993694	15	86258316	GT	G	360	PASS	AKAP13	CCDS32320.1	r.?	-	-	Del	intronic	D	86258316	86258325	1	12	325.687	-	-	8	1	1	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	1	6	2	24	18	24	18	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993708	15	86287016	GA	G	300	PASS	AKAP13	CCDS32320.1	r.8535delA	c.8365delA	p.K2791fs*34	Del	frameshift	D	86287016	86287025	1	12	270.803	-	-	8	1	1	AKAP13|CCDS32320.1|r.8535delA|c.8365delA|p.K2791fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	AKAP13|CCDS32320.1|r.8535delA|c.8365delA|p.K2791fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	6	4	31	25	31	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993822	15	86534559	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	86534559	86534564	2	12	271.405	-	-	2	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	3	15	18	15	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993869	15	86692685	CA	C	351	PASS	AGBL1	ENST00000421325	r.?	-	-	Del	intronic	D	86692685	86692694	1	20	379.968	-	-	8	1	1	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	5	5	28	32	28	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993945	15	87012228	G	GAT	300	PASS	AGBL1	ENST00000421325	r.?	-	-	Ins	intronic	I	87012228	87012239	2	12	259.364	-	-	5	1	1	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	3	6	18	6	18	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759993969	15	87095585	G	GA	358	PASS	AGBL1	ENST00000421325	r.?	-	-	Ins	intronic	I	87095585	87095593	1	20	375.753	-	-	7	1	1	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	4	3	4	3	26	18	26	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994035	15	87322310	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	87322310	87322313	1	15	322.074	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	11	14	0	0	./.	2	4	3	5	24	29	24	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994068	15	87456535	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	87456535	87456540	1	12	268.395	-	-	4	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	3	6	20	28	20	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994145	15	87666428	CA	C	300	PASS	-	-	-	-	-	Del	-	D	87666428	87666438	1	6	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	6	2	24	24	24	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994209	15	87948165	TG	T	300	PASS	-	-	-	-	-	Del	-	D	87948165	87948171	1	12	271.405	-	-	5	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	5	5	29	18	29	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994274	15	88305920	CA	C	360	PASS	-	-	-	-	-	Del	-	D	88305920	88305930	1	16	325.687	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	3	5	16	28	16	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994325	15	88483379	AC	A	360	PASS	NTRK3	CCDS10340.1	r.?	-	-	Del	intronic	D	88483379	88483386	1	15	325.085	-	-	6	1	1	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	2	4	4	5	28	25	28	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994334	15	88524290	CTTTAA	C	329	PASS	NTRK3	CCDS10340.1	r.?	-	-	Del	intronic	D	88524290	88524301	5	12	325.687	-	-	2	1	1	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	5	1	6	15	21	15	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994362	15	88733791	CT	C	600	PASS	NTRK3	CCDS10340.1	r.?	-	-	Del	intronic	D	88733791	88733799	1	27	542.811	-	-	7	1	1	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	8	6	9	34	29	34	29	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994536	15	89411283	GGCA	G	269	PASS	ACAN	ENST00000439576	r.?	-	-	Del	intronic	D	89411283	89411308	3	12	268.395	-	-	8	1	-	ACAN|ENST00000439576|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACAN|ENST00000439576|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	3	2	3	2	27	24	27	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994731	15	89883510	CA	C	300	PASS	-	-	-	-	-	Del	-	D	89883510	89883520	1	12	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	3	2	4	2	17	13	17	13	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759994738	15	89903925	AG	A	420	PASS	-	-	-	-	-	Del	-	D	89903925	89903931	1	20	364.314	-	-	5	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	3	5	6	14	26	14	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995164	15	90907154	G	GT	360	PASS	ZNF774	CCDS32330.1	r.?	-	-	Ins	downstream	I	90907154	90907163	1	15	322.074	-	-	8	1	1	ZNF774|CCDS32330.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF774|CCDS32330.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	16	12	16	0	0	./.	2	4	3	8	37	34	37	34	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995192	15	90970817	TA	T	300	PASS	IQGAP1	CCDS10362.1	r.?	-	-	Del	intronic	D	90970817	90970823	1	12	270.803	-	-	5	1	1	IQGAP1|CCDS10362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQGAP1|CCDS10362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	4	4	15	25	15	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995300	15	91126243	CT	C	360	PASS	CRTC3	CCDS32331.1	r.?	-	-	Del	intronic	D	91126243	91126253	1	16	323.88	-	-	9	1	1	CRTC3|CCDS32331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRTC3|CCDS32331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	5	4	23	21	23	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995323	15	91176154	CT	C	300	PASS	CRTC3	CCDS32331.1	r.?	-	-	Del	intronic	D	91176154	91176162	1	12	271.405	-	-	7	1	1	CRTC3|CCDS32331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRTC3|CCDS32331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	11	22	11	0	0	./.	2	3	4	6	26	31	26	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995433	15	91457745	CT	C	360	PASS	MAN2A2	CCDS32332.1	r.?	-	-	Del	intronic	D	91457745	91457755	1	16	324.482	-	-	9	1	1	MAN2A2|CCDS32332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAN2A2|CCDS32332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	3	4	5	34	30	34	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995674	15	92274186	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	92274186	92274195	1	10	266.589	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	1	4	1	24	14	24	14	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995708	15	92428088	CT	C	420	PASS	SLCO3A1	CCDS10371.1	r.?	-	-	Del	intronic	D	92428088	92428098	1	20	379.968	-	-	9	1	1	SLCO3A1|CCDS10371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLCO3A1|CCDS10371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	3	5	3	26	6	26	6	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995768	15	92598733	GT	G	480	PASS	SLCO3A1	CCDS10371.1	r.?	-	-	Del	intronic	D	92598733	92598742	1	21	423.412	-	-	8	1	1	SLCO3A1|CCDS10371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLCO3A1|CCDS10371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	6	2	7	3	31	22	31	22	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759995929	15	93195473	CA	C	569	PASS	FAM174B	CCDS45355.1	r.?	-	-	Del	intronic	D	93195473	93195479	1	32	542.811	-	-	5	1	1	FAM174B|CCDS45355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM174B|CCDS45355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	7	6	11	27	38	27	38	6	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996026	15	93389840	CT	C	360	PASS	-	-	-	-	-	Del	-	D	93389840	93389848	1	15	324.482	-	-	7	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	2	4	3	21	33	21	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996033	15	93393871	CT	C	360	PASS	-	-	-	-	-	Del	-	D	93393871	93393881	1	16	325.687	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	3	28	23	28	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996079	15	93480818	CA	C	300	PASS	CHD2	CCDS10374.2	r.1222delA	c.515delA	p.V175fs*1	Del	frameshift	D	93480818	93480827	1	6	269.599	-	-	8	1	1	CHD2|CCDS10374.2|r.1222delA|c.515delA|p.V175fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CHD2|CCDS10374.2|r.1222delA|c.515delA|p.V175fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	13	7	13	0	0	./.	5	0	5	0	23	8	23	8	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996264	15	93911533	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	93911533	93911543	1	12	267.191	-	-	9	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	5	4	40	25	40	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996499	15	94509457	TC	T	300	PASS	-	-	-	-	-	Del	-	D	94509457	94509463	1	6	265.385	-	-	5	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	0	5	1	25	14	25	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996502	15	94519353	C	CCT	480	PASS	-	-	-	-	-	Ins	-	I	94519353	94519364	2	24	424.014	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	5	4	30	11	30	11	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996589	15	94782788	CCT	C	480	PASS	MCTP2	CCDS32338.1	r.?	-	-	Del	intronic	D	94782788	94782791	2	24	432.443	-	-	1	1	1	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	5	3	6	4	32	27	32	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996655	15	94920029	CA	C	300	PASS	MCTP2	CCDS32338.1	r.?	-	-	Del	intronic	D	94920029	94920037	1	12	271.405	-	-	7	1	1	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	5	4	23	33	23	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996770	15	95279582	CT	C	480	PASS	-	-	-	-	-	Del	-	D	95279582	95279591	1	24	434.249	-	-	8	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	3	5	4	6	28	23	28	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996786	15	95329893	CT	C	300	PASS	-	-	-	-	-	Del	-	D	95329893	95329902	1	10	271.405	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	1	4	1	6	3	23	3	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996866	15	95577233	TA	T	360	PASS	-	-	-	-	-	Del	-	D	95577233	95577243	1	7	325.687	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	6	1	8	11	27	11	27	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996885	15	95653866	AT	A	300	PASS	-	-	-	-	-	Del	-	D	95653866	95653876	1	12	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	5	4	20	30	20	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996903	15	95751822	CT	C	360	PASS	-	-	-	-	-	Del	-	D	95751822	95751830	1	16	325.687	-	-	7	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	3	3	3	20	18	20	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996952	15	95925005	TA	T	300	PASS	-	-	-	-	-	Del	-	D	95925005	95925015	1	10	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	1	4	8	31	8	31	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759996954	15	95943895	CT	C	473	PASS	-	-	-	-	-	Del	-	D	95943895	95943901	1	24	433.045	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	5	4	6	16	29	16	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997210	15	96750394	TA	T	300	PASS	-	-	-	-	-	Del	-	D	96750394	96750403	1	12	271.405	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	2	4	9	25	9	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997357	15	97115352	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	97115352	97115361	1	42	590.469	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	6	6	6	26	14	27	14	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997375	15	97187386	GA	G	360	PASS	-	-	-	-	-	Del	-	D	97187386	97187395	1	12	325.687	-	-	8	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	1	5	1	5	16	28	16	28	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997503	15	97583343	GA	G	360	PASS	-	-	-	-	-	Del	-	D	97583343	97583350	1	12	325.687	-	-	6	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	1	5	1	25	15	25	15	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997711	15	98305833	TA	T	298	PASS	AC027708.1	ENST00000503768	r.?	-	-	Del	intronic	D	98305833	98305842	1	16	325.687	-	-	8	1	1	AC027708.1|ENST00000503768|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC027708.1|ENST00000503768|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	3	6	4	33	12	33	12	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997858	15	98680145	GT	G	480	PASS	-	-	-	-	-	Del	-	D	98680145	98680153	1	21	433.045	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	6	3	6	28	26	28	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759997922	15	98856043	TAG	T	298	PASS	-	-	-	-	-	Del	-	D	98856043	98856061	2	15	325.687	-	-	8	1	-	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	4	2	6	2	33	20	33	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998321	15	99781083	CA	C	329	PASS	TTC23	CCDS10379.2	r.?	-	-	Del	intronic	D	99781083	99781092	1	15	322.074	-	-	8	1	1	TTC23|CCDS10379.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TTC23|CCDS10379.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	16	3	16	0	0	./.	2	4	3	5	24	34	24	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998424	15	100131521	GT	G	540	PASS	MEF2A	CCDS45362.1	r.?	-	-	Del	intronic	D	100131521	100131531	1	24	488.53	-	-	9	1	1	MEF2A|CCDS45362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MEF2A|CCDS45362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	7	2	10	23	36	23	36	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998580	15	100616250	CT	C	300	PASS	ADAMTS17	CCDS10383.1	r.?	-	-	Del	intronic	D	100616250	100616260	1	12	271.405	-	-	9	1	1	ADAMTS17|CCDS10383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS17|CCDS10383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	21	6	21	0	0	./.	3	2	3	3	28	25	28	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998663	15	100914633	GT	G	300	PASS	-	-	-	-	-	Del	-	D	100914633	100914643	1	6	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	5	0	6	0	20	3	20	3	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998822	15	101277201	GA	G	300	PASS	-	-	-	-	-	Del	-	D	101277201	101277211	1	10	271.405	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	1	4	1	4	25	30	25	30	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998847	15	101367501	AT	A	420	PASS	-	-	-	-	-	Del	-	D	101367501	101367510	1	20	379.968	-	-	8	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	3	4	4	6	29	29	29	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759998969	15	101668402	GT	G	300	PASS	-	-	-	-	-	Del	-	D	101668402	101668412	1	12	271.405	-	-	9	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	5	25	26	25	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999000	15	101752601	TA	T	360	PASS	CHSY1	ENST00000254190	r.?	-	-	Del	intronic	D	101752601	101752609	1	15	325.687	-	-	7	1	1	CHSY1|ENST00000254190|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHSY1|ENST00000254190|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	2	4	3	5	23	19	23	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999194	15	102263890	CA	C	360	PASS	TARSL2	CCDS10394.1	r.?	-	-	Del	intronic	D	102263890	102263899	1	15	325.687	-	-	8	1	1	TARSL2|CCDS10394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TARSL2|CCDS10394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	6	2	23	8	23	8	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999592	16	776729	CCTT	C	480	PASS	NARFL	CCDS10425.1	r.?	-	-	Del	downstream	D	776729	776735	3	25	433.801	-	-	1	1	1	NARFL|CCDS10425.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CCDC78|ENST00000423653|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	4	4	4	4	24	15	24	15	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999724	16	1193581	CA	C	269	PASS	-	-	-	-	-	Del	-	D	1193581	1193590	1	12	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	23	19	23	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999780	16	1354961	TG	T	277	PASS	UBE2I	CCDS10433.1	r.?	-	-	Del	upstream	D	1354961	1354965	1	12	271.125	-	-	3	1	1	UBE2I|CCDS10433.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	UBE2I|CCDS10433.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	5	4	25	22	25	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999881	16	1636311	TA	T	335	PASS	IFT140	CCDS10439.1	r.?	-	-	Del	intronic	D	1636311	1636319	1	14	379.576	-	-	7	1	1	IFT140|CCDS10439.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFT140|CCDS10439.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	13	3	13	0	0	./.	1	6	2	8	20	36	20	36	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2759999982	16	1881158	TA	T	300	PASS	FAHD1	CCDS32367.1	r.?	-	-	Del	intronic	D	1881158	1881166	1	12	271.125	-	-	7	1	1	FAHD1|CCDS32367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAHD1|CCDS32367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	4	3	26	20	26	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000050	16	2056322	TG	T	300	PASS	ZNF598	ENST00000431526	r.?	-	-	Del	intronic	D	2056322	2056327	1	10	271.125	-	-	4	1	1	ZNF598|ENST00000431526|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF598|ENST00000431526|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	1	4	3	4	24	27	24	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000259	16	2759338	CT	C	300	PASS	KCTD5	CCDS10475.1	r.?	-	-	Del	downstream	D	2759338	2759348	1	10	271.125	-	-	9	1	1	KCTD5|CCDS10475.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	KCTD5|CCDS10475.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	8	10	8	10	0	0	./.	1	4	3	5	29	19	29	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000365	16	2989546	TA	T	360	PASS	FLYWCH1	CCDS45390.1	r.?	-	-	Del	intronic	D	2989546	2989556	1	15	325.351	-	-	9	1	1	FLYWCH1|CCDS45390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLYWCH1|CCDS45390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	4	2	5	6	27	24	27	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000383	16	3074128	AG	A	360	PASS	THOC6	CCDS10491.1	r.98delG	c.?	p.?	Del	5'UTR variant	D	3074128	3074134	1	12	321.738	-	-	5	1	1	THOC6|CCDS10491.1|r.98delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	THOC6|CCDS10491.1|r.98delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	9	6	9	6	0	0	./.	1	5	2	6	18	25	18	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000415	16	3179148	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	3179148	3179158	1	12	321.738	-	-	9	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	5	1	6	2	34	17	34	17	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000442	16	3242917	TA	T	300	PASS	-	-	-	-	-	Del	-	D	3242917	3242927	1	6	271.125	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	0	5	2	6	16	34	16	34	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000551	16	3494450	GA	G	360	PASS	NAT15	CCDS45396.1	r.?	-	-	Del	intronic	D	3494450	3494460	1	12	325.351	-	-	9	1	1	NAT15|CCDS45396.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NAT15|CCDS45396.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	1	8	4	37	27	37	27	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000571	16	3522407	GT	G	360	PASS	NAT15	CCDS45396.1	r.?	-	-	Del	intronic	D	3522407	3522415	1	15	325.351	-	-	7	1	1	NAT15|CCDS45396.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NAT15|CCDS45396.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	2	4	5	4	41	19	41	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000598	16	3588996	TA	T	360	PASS	CLUAP1	CCDS45398.1	r.?	-	-	Del	downstream	D	3588996	3589006	1	7	325.351	-	-	9	1	1	CLUAP1|CCDS45398.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLUAP1|CCDS45398.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	8	12	8	0	0	./.	6	0	7	1	33	18	33	18	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000713	16	3898943	TA	T	480	PASS	CREBBP	CCDS10509.1	r.?	-	-	Del	intronic	D	3898943	3898953	1	25	433.801	-	-	9	1	1	CREBBP|CCDS10509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREBBP|CCDS10509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	5	7	26	33	26	33	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000903	16	4273076	CA	C	301	PASS	SRL	CCDS42113.1	r.?	-	-	Del	intronic	D	4273076	4273084	1	20	378.974	-	-	7	1	1	SRL|CCDS42113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRL|CCDS42113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	4	3	6	3	21	22	21	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000910	16	4279450	CA	C	360	PASS	SRL	CCDS42113.1	r.?	-	-	Del	intronic	D	4279450	4279460	1	15	325.351	-	-	9	1	1	SRL|CCDS42113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRL|CCDS42113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	2	6	3	34	27	34	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760000947	16	4387550	GC	G	300	PASS	GLIS2	CCDS10511.1	r.2422delC	c.?	p.?	Del	3'UTR variant	D	4387550	4387558	1	12	269.319	-	-	7	1	1	GLIS2|CCDS10511.1|r.2422delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GLIS2|CCDS10511.1|r.2422delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	5	4	30	27	30	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001253	16	5174315	CT	C	537	PASS	-	-	-	-	-	Del	-	D	5174315	5174325	1	30	487.424	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	4	6	6	34	30	34	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001470	16	5680896	GT	G	269	PASS	-	-	-	-	-	Del	-	D	5680896	5680905	1	12	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	3	2	5	3	31	21	31	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001480	16	5704946	TC	T	480	PASS	-	-	-	-	-	Del	-	D	5704946	5704954	1	9	431.995	-	-	7	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	8	0	10	1	23	29	23	29	10	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001538	16	5894221	GT	G	420	PASS	-	-	-	-	-	Del	-	D	5894221	5894230	1	18	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	2	7	3	38	23	38	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001548	16	5924502	AT	A	300	PASS	-	-	-	-	-	Del	-	D	5924502	5924512	1	10	270.523	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	2	6	14	23	14	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001745	16	6491151	TG	T	300	PASS	-	-	-	-	-	Del	-	D	6491151	6491158	1	10	271.125	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	5	3	29	25	29	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760001892	16	6819798	GT	G	420	PASS	-	-	-	-	-	Del	-	D	6819798	6819807	1	20	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	3	5	25	22	25	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002093	16	7267972	TGC	T	358	PASS	-	-	-	-	-	Del	-	D	7267972	7267976	2	18	379.576	-	-	1	1	-	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	5	3	5	22	29	22	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002347	16	7960462	GA	G	420	PASS	-	-	-	-	-	Del	-	D	7960462	7960469	1	14	379.576	-	-	6	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	6	1	9	2	29	16	29	16	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002464	16	8299340	CT	C	300	PASS	-	-	-	-	-	Del	-	D	8299340	8299347	1	12	271.125	-	-	6	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	2	6	3	17	20	17	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002532	16	8483534	TA	T	420	PASS	-	-	-	-	-	Del	-	D	8483534	8483543	1	20	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	4	4	5	24	33	24	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002790	16	8920654	G	GT	360	PASS	PMM2	CCDS10536.1	r.?	-	-	Ins	intronic	I	8920654	8920663	1	12	321.738	-	-	8	1	1	PMM2|CCDS10536.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PMM2|CCDS10536.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	1	5	2	6	15	24	15	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002865	16	9084753	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	9084753	9084762	1	12	321.738	-	-	8	1	1	-	-	./.	0	0	0	0	9	16	10	16	0	0	./.	1	5	2	7	9	16	9	16	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760002918	16	9166917	G	GC	480	PASS	-	-	-	-	-	Ins	-	I	9166917	9166922	1	21	428.984	-	-	4	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	6	4	10	29	45	29	46	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760003217	16	9791454	GA	G	360	PASS	-	-	-	-	-	Del	-	D	9791454	9791464	1	7	325.351	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	6	0	7	2	34	26	34	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760003223	16	9806756	TG	T	360	PASS	-	-	-	-	-	Del	-	D	9806756	9806765	1	16	325.351	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	3	3	3	29	21	29	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760003417	16	10323711	AC	A	300	PASS	-	-	-	-	-	Del	-	D	10323711	10323717	1	12	271.125	-	-	5	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	2	3	2	19	10	19	10	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760003879	16	11400172	AAAC	A	360	PASS	MIR548H2	ENST00000408874	r.?	-	-	Del	downstream	D	11400172	11400193	3	16	323.544	-	-	6	1	-	MIR548H2|ENST00000408874|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	MIR548H2|ENST00000408874|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	5	5	30	28	30	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004021	16	11663270	A	AT	420	PASS	LITAF	CCDS32386.1	r.?	-	-	Ins	intronic	I	11663270	11663279	1	20	375.361	-	-	8	1	1	LITAF|CCDS32386.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LITAF|CCDS32386.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	4	4	6	22	29	22	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004049	16	11720711	GT	G	300	PASS	-	-	-	-	-	Del	-	D	11720711	11720721	1	12	271.125	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	4	4	20	23	20	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004639	16	12894805	AT	A	420	PASS	CPPED1	CCDS42120.1	r.?	-	-	Del	intronic	D	12894805	12894812	1	18	379.576	-	-	6	1	1	CPPED1|CCDS42120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPPED1|CCDS42120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	2	5	3	26	24	26	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004689	16	12994026	CT	C	420	PASS	SHISA9	CCDS45418.1	r.?	-	-	Del	upstream	D	12994026	12994036	1	18	379.576	-	-	9	1	1	SHISA9|CCDS45418.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SHISA9|CCDS45418.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	15	10	15	0	0	./.	2	5	4	6	29	24	29	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004746	16	13118926	AT	A	360	PASS	SHISA9	CCDS45417.1	r.?	-	-	Del	intronic	D	13118926	13118934	1	12	325.351	-	-	7	1	1	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	1	5	1	6	10	22	10	22	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004788	16	13266031	CTCT	C	418	PASS	SHISA9	CCDS45417.1	r.?	-	-	Del	intronic	D	13266031	13266039	3	24	433.801	-	-	2	1	1	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	3	6	3	27	16	27	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004824	16	13365627	TG	T	538	PASS	-	-	-	-	-	Del	-	D	13365627	13365636	1	35	538.639	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	6	8	8	25	29	25	29	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004826	16	13385884	CT	C	420	PASS	-	-	-	-	-	Del	-	D	13385884	13385893	1	20	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	4	3	5	26	29	26	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004903	16	13567670	TC	T	420	PASS	-	-	-	-	-	Del	-	D	13567670	13567672	1	14	378.372	-	-	1	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	6	2	7	27	27	27	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760004908	16	13581420	GC	G	360	PASS	-	-	-	-	-	Del	-	D	13581420	13581426	1	15	321.136	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	2	4	15	23	15	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005001	16	13799528	GA	G	360	PASS	-	-	-	-	-	Del	-	D	13799528	13799536	1	12	324.146	-	-	7	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	5	1	5	1	26	19	26	19	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005247	16	14493471	TA	T	259	PASS	-	-	-	-	-	Del	-	D	14493471	14493477	1	20	372.351	-	-	5	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	4	3	4	3	31	19	31	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005263	16	14522506	GA	G	360	PASS	-	-	-	-	-	Del	-	D	14522506	14522515	1	12	325.351	-	-	8	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	5	1	5	2	17	21	17	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005340	16	14741942	CA	C	300	PASS	BFAR	CCDS10554.1	r.?	-	-	Del	intronic	D	14741942	14741952	1	6	268.717	-	-	9	1	1	BFAR|CCDS10554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BFAR|CCDS10554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	5	0	7	0	31	20	31	20	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005497	16	15283125	G	GT	250	PASS	-	-	-	-	-	Ins	-	I	15283125	15283134	1	16	319.932	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	3	3	4	21	13	22	13	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005639	16	15679903	CA	C	269	PASS	C16orf45	CCDS10561.1	r.?	-	-	Del	intronic	D	15679903	15679910	1	10	271.125	-	-	6	1	1	C16orf45|CCDS10561.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C16orf45|CCDS10561.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	1	4	2	5	22	20	22	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005652	16	15716415	AT	A	360	PASS	KIAA0430	CCDS10562.2	r.?	-	-	Del	intronic	D	15716415	15716425	1	15	325.351	-	-	9	1	1	KIAA0430|CCDS10562.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0430|CCDS10562.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	4	4	4	28	24	28	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005670	16	15765197	CA	C	360	PASS	MIR484	CCDS10564.1	r.?	-	-	Del	intronic	D	15765197	15765205	1	12	324.749	-	-	7	1	1	MIR484|CCDS10564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR484|CCDS10564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	1	5	1	5	22	26	22	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005728	16	15927929	CT	C	569	PASS	MYH11	CCDS45424.1	r.?	-	-	Del	intronic	D	15927929	15927939	1	35	542.251	-	-	9	1	1	MYH11|CCDS45424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYH11|CCDS45424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	6	5	6	23	28	23	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005814	16	16102545	CA	C	269	PASS	ABCC1	CCDS42122.1	r.?	-	-	Del	intronic	D	16102545	16102551	1	10	271.125	-	-	5	1	1	ABCC1|CCDS42122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC1|CCDS42122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	4	1	5	1	25	5	25	5	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760005867	16	16211761	TA	T	720	PASS	ABCC1	CCDS42122.1	r.?	-	-	Del	intronic	D	16211761	16211771	1	45	650.701	-	-	9	1	1	ABCC1|CCDS42122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC1|CCDS42122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	8	4	11	4	28	19	28	19	11	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760006325	16	17817522	TA	T	480	PASS	-	-	-	-	-	Del	-	D	17817522	17817532	1	24	433.199	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	5	6	6	19	31	19	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760006856	16	19354466	CTCTT	C	480	PASS	-	-	-	-	-	Del	-	D	19354466	19354478	4	21	433.801	-	-	2	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	2	6	4	28	30	28	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007021	16	19623091	T	TG	300	PASS	C16orf62	CCDS32397.1	r.?	-	-	Ins	intronic	I	19623091	19623099	1	12	265.105	-	-	7	1	1	C16orf62|CCDS32397.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C16orf62|CCDS32397.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	4	2	26	28	26	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007121	16	19906275	C	CCT	300	PASS	-	-	-	-	-	Ins	-	I	19906275	19906288	2	12	263.299	-	-	6	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	2	3	24	25	25	26	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007146	16	19985124	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	19985124	19985134	1	16	313.309	-	-	9	1	1	-	-	./.	0	0	0	0	20	13	21	14	0	0	./.	3	3	5	4	36	28	36	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007246	16	20294493	AT	A	480	PASS	-	-	-	-	-	Del	-	D	20294493	20294502	1	21	433.801	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	6	3	7	28	26	28	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007252	16	20306191	CA	C	360	PASS	-	-	-	-	-	Del	-	D	20306191	20306200	1	15	325.351	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	4	3	4	20	28	20	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007396	16	20876957	CG	C	480	PASS	DCUN1D3	CCDS10592.1	r.?	-	-	Del	intronic	D	20876957	20876961	1	16	433.801	-	-	3	1	1	DCUN1D3|CCDS10592.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DCUN1D3|CCDS10592.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	7	1	7	1	25	9	25	9	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760007469	16	21077490	G	GT	360	PASS	DNAH3	CCDS10594.1	r.?	-	-	Ins	intronic	I	21077490	21077499	1	16	315.116	-	-	8	1	1	DNAH3|CCDS10594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH3|CCDS10594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	3	5	5	32	39	33	40	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008063	16	22934717	GC	G	360	PASS	-	-	-	-	-	Del	-	D	22934717	22934726	1	12	325.351	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	1	5	5	7	33	28	33	28	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008073	16	22954243	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	22954243	22954258	2	10	271.125	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	4	2	26	25	26	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008116	16	23078548	G	GA	420	PASS	USP31	CCDS10607.1	r.4877_4878insu	c.?	p.?	Ins	3'UTR variant	I	23078548	23078557	1	20	374.759	-	-	8	1	1	USP31|CCDS10607.1|r.4877_4878insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	USP31|CCDS10607.1|r.4877_4878insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	12	18	12	0	0	./.	4	3	4	5	28	35	28	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008122	16	23085339	T	TA	360	PASS	USP31	CCDS10607.1	r.?	-	-	Ins	intronic	I	23085339	23085349	1	16	319.932	-	-	9	1	1	USP31|CCDS10607.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USP31|ENST00000381162|r.833_834insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	5	5	21	22	21	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008523	16	23928708	GT	G	420	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	intronic	D	23928708	23928713	1	18	378.974	-	-	4	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	5	2	6	4	34	16	34	16	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008552	16	24009686	AT	A	360	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	intronic	D	24009686	24009696	1	16	314.513	-	-	9	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	3	3	21	28	21	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008585	16	24075498	G	GA	300	PASS	PRKCB	CCDS10619.1	r.?	-	-	Ins	intronic	I	24075498	24075508	1	6	266.911	-	-	9	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	0	5	2	39	24	39	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008688	16	24389124	AT	A	420	PASS	-	-	-	-	-	Del	-	D	24389124	24389126	1	18	379.576	-	-	1	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	5	2	7	2	29	25	29	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008752	16	24521896	GA	G	300	PASS	-	-	-	-	-	Del	-	D	24521896	24521905	1	6	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	0	8	1	42	23	42	23	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760008869	16	24718818	T	TA	360	PASS	AC002565.1	ENST00000505247	r.2518_2519insa	-	-	Ins	non-coding variant	I	24718818	24718823	1	15	320.534	-	-	4	1	1	AC002565.1|ENST00000505247|r.2518_2519insa|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	AC002565.1|ENST00000505247|r.2518_2519insa|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	./.	0	0	0	0	9	3	9	3	0	0	./.	2	4	2	5	11	26	11	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009357	16	25725464	CA	C	360	PASS	HS3ST4	ENST00000331351	r.?	-	-	Del	intronic	D	25725464	25725473	1	15	325.351	-	-	8	1	1	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	4	2	4	24	21	24	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009385	16	25811175	AT	A	300	PASS	HS3ST4	ENST00000331351	r.?	-	-	Del	intronic	D	25811175	25811183	1	12	271.125	-	-	7	1	-	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	3	3	3	15	21	15	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009497	16	26153108	CT	C	360	PASS	HS3ST4	ENST00000331351	r.?	-	-	Del	downstream	D	26153108	26153117	1	16	325.351	-	-	8	1	1	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HS3ST4|ENST00000331351|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	9	14	9	0	0	./.	3	3	3	4	19	19	19	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009522	16	26219981	TA	T	300	PASS	-	-	-	-	-	Del	-	D	26219981	26219988	1	12	271.125	-	-	6	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	3	7	15	20	15	20	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009610	16	26503122	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	26503122	26503139	2	16	325.351	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	4	3	31	27	31	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009668	16	26678288	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	26678288	26678297	1	24	428.984	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	4	5	37	38	37	38	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009749	16	26884392	GA	G	420	PASS	-	-	-	-	-	Del	-	D	26884392	26884401	1	18	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	5	2	8	4	30	26	30	26	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009892	16	27246539	CTCTT	C	360	PASS	NSMCE1	CCDS10628.2	r.295_298delAAGA	c.214_217delAAGA	p.K72fs*15	Del	frameshift	D	27246539	27246545	4	16	325.351	-	-	1	1	1	NSMCE1|CCDS10628.2|r.295_298delAAGA|c.214_217delAAGA|p.K72fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	NSMCE1|CCDS10628.2|r.295_298delAAGA|c.214_217delAAGA|p.K72fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	13	5	13	0	0	./.	3	3	3	3	20	29	20	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009896	16	27256350	AC	A	300	PASS	NSMCE1	CCDS10628.2	r.?	-	-	Del	intronic	D	27256350	27256357	1	12	271.125	-	-	6	1	1	NSMCE1|CCDS10628.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSMCE1|CCDS10628.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	2	4	2	31	33	31	33	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009898	16	27267394	CT	C	360	PASS	NSMCE1	CCDS10628.2	r.?	-	-	Del	intronic	D	27267394	27267403	1	15	325.351	-	-	8	1	1	NSMCE1|CCDS10628.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSMCE1|CCDS10628.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	4	2	9	4	31	30	31	30	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760009994	16	27555705	C	CA	300	PASS	GTF3C1	CCDS32414.1	r.?	-	-	Ins	intronic	I	27555705	27555714	1	12	266.309	-	-	8	1	1	GTF3C1|CCDS32414.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GTF3C1|CCDS32414.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	5	4	25	29	25	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760010178	16	28084119	CA	C	300	PASS	-	-	-	-	-	Del	-	D	28084119	28084128	1	12	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	2	4	2	21	12	21	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760010200	16	28179819	GA	G	300	PASS	XPO6	CCDS42135.1	r.?	-	-	Del	intronic	D	28179819	28179829	1	12	271.125	-	-	9	1	1	XPO6|CCDS42135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XPO6|CCDS42135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	2	5	23	22	23	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760010581	16	29269247	GC	G	372	PASS	-	-	-	-	-	Del	-	D	29269247	29269252	1	20	377.167	-	-	4	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	3	4	9	21	32	21	32	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760010947	16	30428296	C	CA	360	PASS	ZNF771	CCDS45460.1	r.?	-	-	Ins	intronic	I	30428296	30428299	1	15	321.738	-	-	2	1	1	ZNF771|CCDS45460.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF771|CCDS45460.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	4	5	5	30	20	30	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760011111	16	30800365	CA	C	300	PASS	ZNF629	CCDS45463.1	r.?	-	-	Del	upstream	D	30800365	30800375	1	12	271.125	-	-	9	1	-	ZNF629|CCDS45463.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZNF629|CCDS45463.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	4	3	30	29	30	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760011131	16	30864430	A	AT	300	PASS	MIR762	ENST00000380317	r.?	-	-	Ins	intronic	I	30864430	30864438	1	12	268.115	-	-	7	1	1	MIR762|ENST00000380317|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIR762|ENST00000380317|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	3	4	24	8	24	8	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760011184	16	31001921	GCA	G	449	PASS	STX1B	CCDS10699.1	r.3193_3194delUG	c.?	p.?	Del	3'UTR variant	D	31001921	31001933	2	24	431.995	-	-	5	1	1	STX1B|CCDS10699.1|r.3193_3194delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	STX1B|CCDS10699.1|r.3193_3194delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	6	9	6	0	0	./.	3	5	3	5	31	31	31	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760011318	16	31292500	CT	C	267	PASS	ITGAM	CCDS45470.1	r.?	-	-	Del	intronic	D	31292500	31292509	1	20	379.576	-	-	8	1	1	ITGAM|CCDS45470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGAM|CCDS45470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	3	5	6	25	29	25	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760011488	16	31853770	CA	C	480	PASS	-	-	-	-	-	Del	-	D	31853770	31853776	1	21	432.597	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	6	4	8	19	25	19	25	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760012012	16	32575000	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	32575000	32575009	1	12	268.115	-	-	8	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	3	2	5	2	46	26	46	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760012459	16	33413035	AG	A	298	PASS	-	-	-	-	-	Del	-	D	33413035	33413038	1	15	325.351	-	-	2	1	1	-	-	./.	0	0	0	0	27	41	27	41	0	0	./.	2	4	3	5	73	58	73	58	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760013540	16	34609844	GT	G	480	PASS	ENSG00000237113	ENST00000425453	r.?	-	-	Del	intronic	D	34609844	34609853	1	24	433.199	-	-	8	1	1	ENSG00000237113|ENST00000425453|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237113|ENST00000425453|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	5	3	6	22	39	22	39	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760013586	16	34968486	GC	G	360	PASS	-	-	-	-	-	Del	-	D	34968486	34968493	1	16	322.942	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	4	4	20	29	20	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760013593	16	35003395	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	35003395	35003402	1	12	268.115	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	14	0	0	./.	2	3	2	4	22	31	22	31	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760013619	16	35164233	CA	C	420	PASS	-	-	-	-	-	Del	-	D	35164233	35164242	1	14	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	1	6	3	7	26	24	26	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760013980	16	46461343	TA	T	600	PASS	-	-	-	-	-	Del	-	D	46461343	46461353	1	32	541.047	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	7	3	8	3	33	16	33	16	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014074	16	46604240	CA	C	300	PASS	ANKRD26P1	ENST00000329373	r.?	-	-	Del	upstream	D	46604240	46604247	1	12	271.125	-	-	6	1	1	ANKRD26P1|ENST00000329373|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ANKRD26P1|ENST00000329373|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	5	5	22	21	22	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014117	16	46730408	TC	T	420	PASS	ORC6L	CCDS10722.1	r.?	-	-	Del	intronic	D	46730408	46730414	1	20	378.974	-	-	5	1	1	ORC6L|CCDS10722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ORC6L|CCDS10722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	3	6	3	21	27	21	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014170	16	46890393	TA	T	420	PASS	-	-	-	-	-	Del	-	D	46890393	46890401	1	8	378.372	-	-	7	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	0	7	0	8	9	28	9	28	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014311	16	47389076	TA	T	420	PASS	ITFG1	CCDS10728.1	r.?	-	-	Del	intronic	D	47389076	47389086	1	18	379.576	-	-	9	1	1	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	5	2	7	3	29	27	29	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014319	16	47435777	G	GT	300	PASS	ITFG1	CCDS10728.1	r.?	-	-	Ins	intronic	I	47435777	47435786	1	12	268.115	-	-	8	1	1	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	4	4	26	19	26	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014320	16	47446448	GA	G	360	PASS	ITFG1	CCDS10728.1	r.?	-	-	Del	intronic	D	47446448	47446457	1	15	324.146	-	-	8	1	1	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	4	2	5	18	23	18	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014341	16	47570719	G	GA	360	PASS	PHKB	CCDS42161.1	r.?	-	-	Ins	intronic	I	47570719	47570728	1	12	321.738	-	-	8	1	1	PHKB|CCDS42161.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHKB|CCDS42161.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	1	5	2	6	28	22	28	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014379	16	47850968	TA	T	480	PASS	-	-	-	-	-	Del	-	D	47850968	47850977	1	25	433.801	-	-	8	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	4	4	6	6	44	23	44	23	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014383	16	47877404	AC	A	300	PASS	-	-	-	-	-	Del	-	D	47877404	47877413	1	10	270.523	-	-	8	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	4	1	4	2	22	20	22	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014416	16	48191544	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	48191544	48191553	1	20	375.361	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	3	5	6	27	28	27	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014464	16	48434104	GT	G	300	PASS	-	-	-	-	-	Del	-	D	48434104	48434111	1	12	271.125	-	-	6	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	2	3	3	5	8	27	8	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014484	16	48494408	GT	G	300	PASS	-	-	-	-	-	Del	-	D	48494408	48494418	1	10	271.125	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	5	1	18	4	18	4	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014488	16	48519283	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	48519283	48519292	1	12	313.309	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	5	1	5	18	44	19	45	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014541	16	48799762	CA	C	300	PASS	-	-	-	-	-	Del	-	D	48799762	48799771	1	12	270.523	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	4	3	17	28	17	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014669	16	49313899	CA	C	300	PASS	CBLN1	CCDS10736.1	r.?	-	-	Del	intronic	D	49313899	49313908	1	12	270.523	-	-	8	1	1	CBLN1|CCDS10736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CBLN1|CCDS10736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	5	19	5	0	0	./.	2	3	2	5	19	19	19	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014709	16	49542267	C	CA	360	PASS	ZNF423	CCDS32445.1	r.?	-	-	Ins	intronic	I	49542267	49542274	1	12	321.738	-	-	6	1	1	ZNF423|CCDS32445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF423|CCDS32445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	1	5	1	7	15	34	15	34	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760014726	16	49611054	TG	T	600	PASS	ZNF423	CCDS32445.1	r.?	-	-	Del	intronic	D	49611054	49611062	1	32	542.251	-	-	7	1	1	ZNF423|CCDS32445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF423|CCDS32445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	7	3	8	4	30	27	30	27	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015172	16	50869967	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	50869967	50869977	1	12	267.513	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	2	3	3	4	29	39	29	40	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015218	16	51044605	TAC	T	420	PASS	-	-	-	-	-	Del	-	D	51044605	51044624	2	18	377.167	-	-	9	1	-	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	5	4	6	21	30	21	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015226	16	51090788	CA	C	600	PASS	-	-	-	-	-	Del	-	D	51090788	51090795	1	32	541.047	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	7	3	8	17	29	17	29	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015332	16	51441674	GA	G	360	PASS	-	-	-	-	-	Del	-	D	51441674	51441684	1	15	325.351	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	4	2	5	2	26	22	26	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015421	16	51744810	GT	G	600	PASS	-	-	-	-	-	Del	-	D	51744810	51744817	1	36	538.639	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	5	8	5	32	25	32	25	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015461	16	51820007	TC	T	360	PASS	-	-	-	-	-	Del	-	D	51820007	51820014	1	15	319.932	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	4	4	4	16	22	16	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015560	16	52124128	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	52124128	52124140	2	12	271.125	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	5	2	31	18	31	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015601	16	52308299	C	CT	360	PASS	AC007333.1	ENST00000515084	r.?	-	-	Ins	intronic	I	52308299	52308309	1	12	319.33	-	-	9	1	1	AC007333.1|ENST00000515084|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC007333.1|ENST00000515084|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	5	6	27	38	27	38	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015617	16	52377731	GT	G	300	PASS	-	-	-	-	-	Del	-	D	52377731	52377741	1	10	270.523	-	-	9	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	1	4	1	5	9	23	9	23	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015869	16	53049805	G	GT	360	PASS	ENSG00000236037	ENST00000416537	r.?	-	-	Ins	intronic	I	53049805	53049814	1	12	321.738	-	-	8	1	1	ENSG00000236037|ENST00000416537|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000236037|ENST00000416537|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	5	1	6	2	29	26	30	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760015933	16	53180818	AT	A	300	PASS	CHD9	CCDS45485.1	r.?	-	-	Del	intronic	D	53180818	53180828	1	10	271.125	-	-	9	1	1	CHD9|CCDS45485.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHD9|CCDS45485.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	4	1	5	1	18	16	18	16	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016055	16	53479993	G	GT	300	PASS	RBL2	CCDS10748.1	r.?	-	-	Ins	intronic	I	53479993	53480003	1	10	268.115	-	-	9	1	1	RBL2|CCDS10748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBL2|CCDS10748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	4	1	4	1	34	34	35	34	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016068	16	53516949	TA	T	360	PASS	RBL2	CCDS10748.1	r.?	-	-	Del	intronic	D	53516949	53516954	1	16	325.351	-	-	4	1	1	RBL2|CCDS10748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBL2|CCDS10748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	3	4	4	24	24	24	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016260	16	54176055	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	54176055	54176064	1	16	428.382	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	1	7	3	8	21	32	22	34	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016306	16	54316169	CA	C	600	PASS	IRX3	CCDS10750.1	r.?	-	-	Del	downstream	D	54316169	54316177	1	36	542.251	-	-	7	1	1	IRX3|CCDS10750.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IRX3|CCDS10750.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	13	5	13	0	0	./.	5	5	7	7	25	32	25	32	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016343	16	54423652	CT	C	329	PASS	ENSG00000227093	ENST00000449142	r.?	-	-	Del	intronic	D	54423652	54423660	1	12	325.351	-	-	7	1	1	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	1	5	3	5	24	17	24	17	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016360	16	54463505	TGTG	T	480	PASS	ENSG00000227093	ENST00000449142	r.?	-	-	Del	intronic	D	54463505	54463512	3	21	433.801	-	-	2	1	1	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	2	9	5	36	26	36	26	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016423	16	54652009	AT	A	540	PASS	ENSG00000234908	ENST00000414611	r.?	-	-	Del	intronic	D	54652009	54652019	1	30	488.026	-	-	9	1	1	ENSG00000234908|ENST00000414611|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000234908|ENST00000414611|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	4	5	6	29	23	29	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016448	16	54720709	CA	C	660	PASS	-	-	-	-	-	Del	-	D	54720709	54720717	1	42	595.272	-	-	7	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	6	6	6	24	20	24	20	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016477	16	54825014	AT	A	389	PASS	-	-	-	-	-	Del	-	D	54825014	54825024	1	20	379.576	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	6	4	26	23	26	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016515	16	54934814	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	54934814	54934823	1	24	428.984	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	15	0	0	./.	5	3	6	3	30	23	30	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016541	16	55006050	CT	C	540	PASS	-	-	-	-	-	Del	-	D	55006050	55006059	1	24	484.414	-	-	8	1	-	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	7	2	7	2	27	10	27	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016557	16	55059210	CA	C	300	PASS	-	-	-	-	-	Del	-	D	55059210	55059219	1	6	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	0	6	0	20	13	20	13	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016638	16	55392559	GAC	G	420	PASS	-	-	-	-	-	Del	-	D	55392559	55392569	2	18	379.576	-	-	4	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	2	5	2	24	30	24	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016645	16	55423823	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	55423823	55423831	1	16	321.738	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	3	6	20	32	21	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016738	16	55631978	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	55631978	55631982	1	12	321.738	-	-	3	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	1	5	1	27	9	27	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760016739	16	55632574	TA	T	420	PASS	-	-	-	-	-	Del	-	D	55632574	55632584	1	20	379.576	-	-	9	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	3	4	5	7	28	26	28	26	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017147	16	57079561	GC	G	360	PASS	NLRC5	CCDS10773.1	r.?	-	-	Del	intronic	D	57079561	57079570	1	16	325.351	-	-	8	1	1	NLRC5|CCDS10773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLRC5|CCDS10773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	3	3	3	3	19	30	19	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017228	16	57299575	TTCTA	T	327	PASS	PLLP	CCDS10777.1	r.?	-	-	Del	intronic	D	57299575	57299583	4	20	379.576	-	-	1	1	1	PLLP|CCDS10777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLLP|CCDS10777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	3	4	4	4	29	32	29	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017425	16	57892518	CT	C	300	PASS	-	-	-	-	-	Del	-	D	57892518	57892528	1	10	271.125	-	-	9	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	1	4	1	6	23	32	23	32	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017465	16	57975181	C	CA	300	PASS	CNGB1	CCDS42169.1	r.?	-	-	Ins	intronic	I	57975181	57975182	1	10	268.115	-	-	0	1	1	CNGB1|CCDS42169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNGB1|CCDS42169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	1	6	3	22	20	23	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017599	16	58347730	TA	T	300	PASS	-	-	-	-	-	Del	-	D	58347730	58347738	1	12	266.911	-	-	7	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	2	5	3	22	27	22	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017620	16	58415100	CT	C	360	PASS	-	-	-	-	-	Del	-	D	58415100	58415110	1	12	322.942	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	5	1	6	11	23	11	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017646	16	58473248	CT	C	420	PASS	-	-	-	-	-	Del	-	D	58473248	58473257	1	8	377.77	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	0	7	1	9	25	30	25	30	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017796	16	58808082	GA	G	660	PASS	AC106793.1	ENST00000500117	r.?	-	-	Del	intronic	D	58808082	58808092	1	42	596.476	-	-	9	1	1	AC106793.1|ENST00000500117|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC106793.1|ENST00000500117|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	6	6	7	26	35	26	35	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760017896	16	59143198	CA	C	540	PASS	AC106793.1	ENST00000500117	r.?	-	-	Del	downstream	D	59143198	59143205	1	30	487.424	-	-	6	1	1	AC106793.1|ENST00000500117|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	AC106793.1|ENST00000500117|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	./.	0	0	0	0	9	10	9	10	0	0	./.	5	4	5	4	26	29	26	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018097	16	59842543	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	59842543	59842550	1	15	321.738	-	-	6	1	1	-	-	./.	0	0	0	0	20	17	20	18	0	0	./.	2	4	4	6	22	30	22	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018111	16	59899829	CA	C	480	PASS	AC009094.1	ENST00000500445	r.?	-	-	Del	intronic	D	59899829	59899839	1	24	433.801	-	-	9	1	1	AC009094.1|ENST00000500445|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC009094.1|ENST00000500445|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	3	5	5	21	19	21	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018183	16	60152428	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	60152428	60152436	1	10	268.115	-	-	7	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	4	1	4	1	14	15	15	15	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018188	16	60170178	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	60170178	60170186	1	24	427.78	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	5	3	6	30	22	30	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018278	16	60365034	CA	C	420	PASS	-	-	-	-	-	Del	-	D	60365034	60365043	1	18	379.576	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	2	8	2	37	11	37	11	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018315	16	60455430	CT	C	360	PASS	-	-	-	-	-	Del	-	D	60455430	60455436	1	16	325.351	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	5	6	17	34	17	34	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018505	16	61055810	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	61055810	61055827	2	16	325.351	-	-	8	1	-	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	4	3	31	31	31	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018593	16	61528042	CA	C	329	PASS	-	-	-	-	-	Del	-	D	61528042	61528052	1	15	324.749	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	2	4	4	18	26	18	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018603	16	61574068	CT	C	300	PASS	-	-	-	-	-	Del	-	D	61574068	61574078	1	12	271.125	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	3	6	19	20	19	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018645	16	61674788	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	61674788	61674796	1	18	375.361	-	-	7	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	2	6	3	38	34	38	34	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018723	16	61941417	TA	T	360	PASS	CDH8	CCDS10802.1	r.?	-	-	Del	intronic	D	61941417	61941426	1	15	324.749	-	-	8	1	1	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	4	3	5	10	38	10	38	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018729	16	61963627	CA	C	329	PASS	CDH8	CCDS10802.1	r.?	-	-	Del	intronic	D	61963627	61963636	1	15	325.351	-	-	8	1	1	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	4	1	4	18	18	18	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018737	16	62009161	AAG	A	540	PASS	CDH8	CCDS10802.1	r.?	-	-	Del	intronic	D	62009161	62009175	2	28	488.026	-	-	6	1	-	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	3	6	5	7	21	30	21	30	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018747	16	62055350	AT	A	360	PASS	CDH8	CCDS10802.1	r.912delA	c.?	p.?	Del	5'UTR variant	D	62055350	62055359	1	12	325.351	-	-	8	1	1	CDH8|CCDS10802.1|r.912delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	CDH8|CCDS10802.1|r.912delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	5	1	5	1	30	21	30	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018829	16	62368567	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	62368567	62368573	2	10	271.125	-	-	2	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	1	4	2	5	15	23	15	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018863	16	62467770	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	62467770	62467778	1	21	425.974	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	6	2	8	2	25	16	25	16	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760018995	16	62780978	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	62780978	62780987	1	7	321.738	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	0	6	0	7	10	28	10	28	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019033	16	62900683	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	62900683	62900692	1	14	375.361	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	6	1	6	2	28	32	28	32	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019163	16	63260279	TA	T	389	PASS	-	-	-	-	-	Del	-	D	63260279	63260289	1	18	378.974	-	-	9	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	5	2	5	15	27	15	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019197	16	63348513	TA	T	300	PASS	-	-	-	-	-	Del	-	D	63348513	63348522	1	10	269.319	-	-	8	1	1	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	1	4	2	5	17	27	17	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019322	16	63914281	GT	G	360	PASS	-	-	-	-	-	Del	-	D	63914281	63914289	1	15	320.534	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	2	5	3	30	18	30	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019377	16	64269867	CT	C	480	PASS	-	-	-	-	-	Del	-	D	64269867	64269876	1	24	433.801	-	-	8	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	5	3	9	22	29	22	29	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019384	16	64304784	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	64304784	64304794	1	24	427.78	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	5	4	5	17	18	17	19	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019503	16	64729859	AC	A	420	PASS	-	-	-	-	-	Del	-	D	64729859	64729861	1	20	378.974	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	4	3	5	3	28	30	28	30	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019646	16	65207558	AT	A	300	PASS	-	-	-	-	-	Del	-	D	65207558	65207564	1	10	270.523	-	-	5	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	4	1	5	2	14	20	14	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019861	16	65979465	CA	C	596	PASS	-	-	-	-	-	Del	-	D	65979465	65979474	1	49	650.099	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	6	8	6	27	29	27	29	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019873	16	66007642	CA	C	360	PASS	-	-	-	-	-	Del	-	D	66007642	66007652	1	15	325.351	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	4	4	30	21	30	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019886	16	66045302	CT	C	300	PASS	-	-	-	-	-	Del	-	D	66045302	66045311	1	10	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	1	4	2	23	26	23	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760019934	16	66234159	CA	C	660	PASS	-	-	-	-	-	Del	-	D	66234159	66234168	1	36	594.068	-	-	8	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	8	3	11	3	31	29	31	29	11	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020020	16	66630959	GT	G	329	PASS	-	-	-	-	-	Del	-	D	66630959	66630966	1	16	324.749	-	-	6	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	5	3	27	25	27	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020086	16	66797535	CT	C	480	PASS	ENSG00000249961	ENST00000503866	r.?	-	-	Del	intronic	D	66797535	66797543	1	21	428.984	-	-	7	1	1	ENSG00000249961|ENST00000503866|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000249961|ENST00000503866|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	6	3	7	23	31	23	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020107	16	66839137	G	GT	269	PASS	NAE1	CCDS42171.1	r.?	-	-	Ins	intronic	I	66839137	66839144	1	12	268.115	-	-	6	1	1	NAE1|CCDS42171.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAE1|CCDS42171.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	3	4	34	28	35	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020225	16	67347360	AT	A	420	PASS	KCTD19	CCDS42179.1	r.?	-	-	Del	intronic	D	67347360	67347369	1	20	379.576	-	-	8	1	1	KCTD19|CCDS42179.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCTD19|CCDS42179.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	4	3	5	19	31	19	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020371	16	67811128	GA	G	420	PASS	RANBP10	CCDS32469.1	r.?	-	-	Del	intronic	D	67811128	67811137	1	18	378.372	-	-	8	1	1	RANBP10|CCDS32469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP10|CCDS32469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	2	5	2	6	4	26	4	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020390	16	67871701	T	TA	360	PASS	CENPT	CCDS42182.1	r.?	-	-	Ins	upstream	I	67871701	67871710	1	15	320.534	-	-	8	1	1	CENPT|CCDS42182.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CENPT|CCDS42182.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	4	2	25	25	25	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020426	16	68042272	CT	C	269	PASS	-	-	-	-	-	Del	-	D	68042272	68042281	1	6	257.278	-	-	8	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	0	5	0	5	1	27	1	28	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020492	16	68270742	CAG	C	300	PASS	ESRP2	CCDS10863.1	r.?	-	-	Del	upstream	D	68270742	68270749	2	6	271.125	-	-	3	1	1	ESRP2|CCDS10863.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ESRP2|CCDS10863.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	7	10	7	0	0	./.	5	0	5	2	28	26	28	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020520	16	68337331	CA	C	360	PASS	SLC7A6	CCDS32470.1	r.?	-	-	Del	downstream	D	68337331	68337337	1	15	325.351	-	-	5	1	1	SLC7A6|CCDS32470.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC7A6OS|CCDS10865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	2	4	14	25	14	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020551	16	68411198	GA	G	660	PASS	SMPD3	CCDS10867.1	r.?	-	-	Del	intronic	D	68411198	68411203	1	22	596.476	-	-	4	1	1	SMPD3|CCDS10867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SMPD3|CCDS10867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	2	12	2	0	0	./.	10	1	14	1	44	18	44	18	14	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020554	16	68422592	G	GT	300	PASS	SMPD3	CCDS10867.1	r.?	-	-	Ins	intronic	I	68422592	68422600	1	10	268.115	-	-	7	1	1	SMPD3|CCDS10867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SMPD3|CCDS10867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	4	1	6	3	29	27	29	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760020782	16	68917318	GT	G	360	PASS	TMCO7	CCDS45516.1	r.?	-	-	Del	intronic	D	68917318	68917327	1	15	325.351	-	-	8	1	1	TMCO7|CCDS45516.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMCO7|CCDS45516.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	15	5	15	0	0	./.	4	2	5	2	26	10	26	10	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021149	16	69842151	CT	C	300	PASS	WWP2	CCDS10885.1	r.?	-	-	Del	intronic	D	69842151	69842159	1	10	270.523	-	-	7	1	1	WWP2|CCDS10885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWP2|CCDS10885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	1	4	1	5	3	31	3	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021192	16	69914886	CT	C	300	PASS	WWP2	CCDS10885.1	r.?	-	-	Del	intronic	D	69914886	69914895	1	12	271.125	-	-	8	1	1	WWP2|CCDS10885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWP2|CCDS10885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	3	2	4	23	24	23	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021421	16	70370758	AT	A	300	PASS	DDX19B	CCDS10888.1	r.?	-	-	Del	downstream	D	70370758	70370768	1	12	270.523	-	-	9	1	1	DDX19B|CCDS10888.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AC012184.1|ENST00000502022|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	3	2	4	3	28	24	28	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021464	16	70494316	CT	C	389	PASS	FUK	CCDS10891.2	r.?	-	-	Del	intronic	D	70494316	70494326	1	18	372.953	-	-	9	1	1	FUK|CCDS10891.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FUK|CCDS10891.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	5	2	9	3	29	20	29	20	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021712	16	71035672	AGTGAG	A	290	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Del	intronic	D	71035672	71035680	5	32	541.649	-	-	1	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	3	7	3	7	58	53	58	53	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021763	16	71090923	G	GT	420	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Ins	intronic	I	71090923	71090933	1	18	375.361	-	-	9	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	11	28	11	0	0	./.	2	5	2	5	36	50	36	50	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021925	16	71475152	CT	C	300	PASS	-	-	-	-	-	Del	-	D	71475152	71475161	1	10	271.125	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	6	5	35	28	35	28	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760021957	16	71594778	G	GA	420	PASS	TAT	CCDS10903.1	r.?	-	-	Ins	downstream	I	71594778	71594787	1	20	375.361	-	-	8	1	1	TAT|CCDS10903.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TAT|CCDS10903.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	18	17	18	17	0	0	./.	4	3	5	3	16	23	16	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022066	16	71940640	CT	C	300	PASS	KIAA0174	CCDS10905.1	r.?	-	-	Del	intronic	D	71940640	71940649	1	12	271.125	-	-	8	1	1	KIAA0174|CCDS10905.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA0174|CCDS10905.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	4	4	23	31	23	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022074	16	71968386	CAG	C	300	PASS	PKD1L3	ENST00000335106	r.?	-	-	Del	intronic	D	71968386	71968395	2	10	271.125	-	-	4	1	1	PKD1L3|ENST00000335106|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKD1L3|ENST00000335106|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	4	3	27	29	27	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022327	16	73007772	CA	C	480	PASS	ZFHX3	CCDS10908.1	r.?	-	-	Del	intronic	D	73007772	73007782	1	25	433.801	-	-	9	1	1	ZFHX3|CCDS10908.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZFHX3|CCDS10908.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	4	4	7	8	28	30	28	30	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022362	16	73094439	TC	T	360	PASS	-	-	-	-	-	Del	-	D	73094439	73094448	1	15	319.33	-	-	8	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	2	4	3	5	24	15	24	15	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022436	16	73314304	CA	C	360	PASS	-	-	-	-	-	Del	-	D	73314304	73314312	1	12	325.351	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	1	5	1	6	30	35	30	35	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022440	16	73331096	AT	A	420	PASS	-	-	-	-	-	Del	-	D	73331096	73331103	1	14	377.167	-	-	6	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	6	1	8	1	30	15	30	15	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760022609	16	73750799	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	73750799	73750808	1	35	519.373	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	6	5	7	22	30	23	30	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023078	16	74883631	AGC	A	300	PASS	-	-	-	-	-	Del	-	D	74883631	74883635	2	12	271.125	-	-	1	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	5	4	43	33	43	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023090	16	74904748	TG	T	360	PASS	WDR59	CCDS32488.1	r.?	-	-	Del	downstream	D	74904748	74904756	1	15	324.146	-	-	7	1	1	WDR59|CCDS32488.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	WDR59|CCDS32488.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	9	16	9	0	0	./.	4	2	4	2	32	28	32	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023146	16	75017077	C	CA	300	PASS	WDR59	CCDS32488.1	r.?	-	-	Ins	intronic	I	75017077	75017084	1	12	268.115	-	-	6	1	1	WDR59|CCDS32488.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR59|CCDS32488.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	4	3	24	26	24	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023189	16	75094897	TA	T	300	PASS	ZNRF1	CCDS10912.1	r.?	-	-	Del	intronic	D	75094897	75094906	1	10	271.125	-	-	8	1	1	ZNRF1|CCDS10912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNRF1|CCDS10912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	4	1	6	1	17	13	17	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023196	16	75115947	CT	C	360	PASS	ZNRF1	CCDS10912.1	r.?	-	-	Del	intronic	D	75115947	75115956	1	15	325.351	-	-	8	1	1	ZNRF1|CCDS10912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNRF1|CCDS10912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	5	4	21	28	21	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023484	16	75773633	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	75773633	75773642	1	16	321.738	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	4	19	36	19	37	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023598	16	76274952	CA	C	300	PASS	-	-	-	-	-	Del	-	D	76274952	76274961	1	12	265.707	-	-	8	1	-	-	-	./.	0	0	0	0	25	14	25	14	0	0	./.	2	3	6	5	24	32	24	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023734	16	76838949	AG	A	329	PASS	-	-	-	-	-	Del	-	D	76838949	76838958	1	16	317.524	-	-	8	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	3	3	4	4	25	20	25	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023740	16	76861352	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	76861352	76861359	1	10	268.115	-	-	6	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	6	4	37	24	38	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023901	16	77336774	GA	G	360	PASS	ADAMTS18	CCDS10926.1	r.?	-	-	Del	intronic	D	77336774	77336784	1	16	325.351	-	-	9	1	1	ADAMTS18|CCDS10926.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS18|CCDS10926.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	3	3	18	37	18	37	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760023969	16	77523514	AT	A	480	PASS	-	-	-	-	-	Del	-	D	77523514	77523524	1	25	433.199	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	4	5	4	26	20	26	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024038	16	77681232	TG	T	300	PASS	-	-	-	-	-	Del	-	D	77681232	77681239	1	6	271.125	-	-	6	1	1	-	-	./.	0	0	0	0	23	6	23	6	0	0	./.	5	0	7	0	26	7	26	7	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024114	16	77879253	TC	T	660	PASS	VAT1L	CCDS32492.1	r.?	-	-	Del	intronic	D	77879253	77879259	1	40	591.66	-	-	5	1	1	VAT1L|CCDS32492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VAT1L|CCDS32492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	7	5	7	18	34	18	34	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024132	16	77942514	T	TC	418	PASS	VAT1L	CCDS32492.1	r.?	-	-	Ins	intronic	I	77942514	77942516	1	25	425.974	-	-	1	1	1	VAT1L|CCDS32492.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VAT1L|CCDS32492.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	4	4	4	24	16	26	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024294	16	78339101	AT	A	420	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78339101	78339111	1	14	379.576	-	-	9	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	18	6	18	0	0	./.	6	1	7	1	23	27	23	27	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024419	16	78663134	TTA	T	269	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78663134	78663138	2	12	265.707	-	-	1	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	2	3	3	3	22	31	22	31	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024420	16	78663135	TA	T	360	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78663135	78663137	1	16	315.718	-	-	1	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	3	3	7	5	22	31	22	31	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024456	16	78740702	CT	C	360	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78740702	78740712	1	16	325.351	-	-	9	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	5	3	25	31	25	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024512	16	78880588	AT	A	360	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78880588	78880596	1	15	315.718	-	-	7	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	4	5	4	28	22	28	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024549	16	78939289	AT	A	300	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78939289	78939297	1	12	271.125	-	-	7	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	3	2	22	23	22	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024655	16	79232300	CT	C	360	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	79232300	79232308	1	15	325.351	-	-	7	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	4	2	5	4	16	21	16	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024688	16	79304970	AT	A	300	PASS	-	-	-	-	-	Del	-	D	79304970	79304980	1	12	271.125	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	5	3	27	23	27	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024697	16	79319349	GT	G	420	PASS	-	-	-	-	-	Del	-	D	79319349	79319355	1	8	379.576	-	-	5	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	7	0	9	0	30	3	30	3	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024907	16	80024273	CA	C	360	PASS	-	-	-	-	-	Del	-	D	80024273	80024281	1	7	325.351	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	0	6	3	6	22	35	22	35	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024919	16	80106895	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	80106895	80106904	1	30	482.607	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	4	5	4	29	25	30	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760024944	16	80237612	CA	C	480	PASS	-	-	-	-	-	Del	-	D	80237612	80237618	1	24	433.801	-	-	5	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	3	5	5	9	31	33	31	33	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025073	16	80673520	CA	C	420	PASS	CDYL2	CCDS32493.1	r.?	-	-	Del	intronic	D	80673520	80673530	1	14	377.167	-	-	9	1	1	CDYL2|CCDS32493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDYL2|CCDS32493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	6	1	6	2	27	22	27	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025231	16	81126347	CA	C	660	PASS	GCSH	CCDS10933.1	r.?	-	-	Del	intronic	D	81126347	81126356	1	30	594.67	-	-	8	1	1	GCSH|CCDS10933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GCSH|CCDS10933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	2	9	2	11	27	33	27	33	2	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025286	16	81196098	AT	A	540	PASS	PKD1L2	ENST00000299598	r.?	-	-	Del	intronic	D	81196098	81196107	1	28	488.026	-	-	8	1	1	PKD1L2|ENST00000299598|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	PKD1L2|ENST00000299598|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	6	3	7	8	35	29	35	29	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025387	16	81443588	TA	T	360	PASS	-	-	-	-	-	Del	-	D	81443588	81443596	1	12	325.351	-	-	7	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	1	5	1	33	23	33	23	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025434	16	81629640	CT	C	480	PASS	-	-	-	-	-	Del	-	D	81629640	81629650	1	16	429.586	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	7	1	10	3	34	34	34	34	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025710	16	82399880	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	82399880	82399888	1	60	750.723	-	-	7	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	9	5	9	7	36	33	36	33	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025753	16	82613854	TTG	T	480	PASS	-	-	-	-	-	Del	-	D	82613854	82613868	2	16	431.995	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	7	1	6	22	27	22	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025770	16	82679961	AT	A	360	PASS	-	-	-	-	-	Del	-	D	82679961	82679971	1	15	324.749	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	4	4	6	34	25	34	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025798	16	82779208	CA	C	389	PASS	-	-	-	-	-	Del	-	D	82779208	82779217	1	14	378.974	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	1	6	1	8	23	29	23	29	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025845	16	82921461	GT	G	300	PASS	CDH13	ENST00000268613	r.?	-	-	Del	intronic	D	82921461	82921471	1	12	269.921	-	-	9	1	1	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	3	2	31	28	31	28	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025851	16	82926340	CT	C	300	PASS	CDH13	ENST00000268613	r.?	-	-	Del	intronic	D	82926340	82926350	1	12	271.125	-	-	9	1	1	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	3	3	15	25	15	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760025938	16	83245516	GA	G	420	PASS	CDH13	ENST00000268613	r.?	-	-	Del	intronic	D	83245516	83245526	1	20	379.576	-	-	9	1	1	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	4	5	4	28	26	28	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026213	16	83955771	GC	G	300	PASS	ENSG00000229561	ENST00000412414	r.?	-	-	Del	intronic	D	83955771	83955779	1	12	269.921	-	-	7	1	1	ENSG00000229561|ENST00000412414|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000229561|ENST00000412414|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	2	3	3	3	23	20	23	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026231	16	84025988	CG	C	420	PASS	NECAB2	CCDS10940.1	r.?	-	-	Del	intronic	D	84025988	84025990	1	18	376.565	-	-	1	1	1	NECAB2|CCDS10940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NECAB2|CCDS10940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	2	5	5	6	30	27	30	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026355	16	84344295	A	AT	360	PASS	WFDC1	CCDS10946.1	r.?	-	-	Ins	intronic	I	84344295	84344303	1	12	321.738	-	-	7	1	1	WFDC1|CCDS10946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WFDC1|CCDS10946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	1	5	1	8	17	26	17	26	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026395	16	84408020	GC	G	420	PASS	ATP2C2	CCDS42207.1	r.?	-	-	Del	intronic	D	84408020	84408027	1	18	379.576	-	-	6	1	1	ATP2C2|CCDS42207.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP2C2|CCDS42207.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	5	4	6	22	27	22	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026557	16	84761240	CTCTG	C	869	PASS	USP10	CCDS45537.1	r.?	-	-	Del	intronic	D	84761240	84761249	4	70	813.376	-	-	2	1	-	USP10|CCDS45537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP10|CCDS45537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	9	6	9	9	37	32	37	32	9	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026677	16	84990732	TG	T	360	PASS	-	-	-	-	-	Del	-	D	84990732	84990738	1	15	325.351	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	6	2	18	23	18	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026856	16	85507385	AG	A	300	PASS	-	-	-	-	-	Del	-	D	85507385	85507393	1	12	269.921	-	-	7	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	3	2	4	2	33	20	33	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760026897	16	85645730	CG	C	360	PASS	KIAA0182	CCDS10952.1	r.?	-	-	Del	upstream	D	85645730	85645738	1	15	325.351	-	-	7	1	1	KIAA0182|CCDS10952.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KIAA0182|CCDS45539.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	3	6	13	19	13	19	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027171	16	86351666	CG	C	480	PASS	-	-	-	-	-	Del	-	D	86351666	86351674	1	16	433.199	-	-	7	1	1	-	-	./.	0	0	0	0	9	3	9	3	0	0	./.	1	7	2	9	25	27	25	27	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027179	16	86376227	TA	T	480	PASS	ENSG00000168367	ENST00000304488	r.?	-	-	Del	intronic	D	86376227	86376235	1	24	433.801	-	-	7	1	1	ENSG00000168367|ENST00000304488|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000168367|ENST00000304488|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	5	3	7	4	35	19	35	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027250	16	86599278	CA	C	509	PASS	FOXC2	CCDS10958.1	r.?	-	-	Del	upstream	D	86599278	86599287	1	18	488.026	-	-	8	1	1	FOXC2|CCDS10958.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	FOXC2|CCDS10958.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	5	10	5	0	0	./.	1	8	3	8	20	25	20	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027578	16	87508153	TA	T	300	PASS	ZCCHC14	CCDS10961.1	r.?	-	-	Del	intronic	D	87508153	87508161	1	12	268.717	-	-	7	1	1	ZCCHC14|CCDS10961.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC14|CCDS10961.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	2	16	23	16	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027750	16	87944193	CT	C	360	PASS	CA5A	CCDS10965.1	r.?	-	-	Del	intronic	D	87944193	87944203	1	15	325.351	-	-	9	1	1	CA5A|CCDS10965.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA5A|CCDS10965.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	4	6	25	28	25	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027897	16	88293571	CT	C	360	PASS	-	-	-	-	-	Del	-	D	88293571	88293581	1	12	325.351	-	-	9	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	5	1	5	2	30	24	30	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027925	16	88460301	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	88460301	88460305	1	20	369.943	-	-	3	1	1	-	-	./.	0	0	0	0	15	6	16	6	0	0	./.	3	4	3	4	23	24	23	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027943	16	88491733	AG	A	420	PASS	ZNF469	CCDS45544.1	r.?	-	-	Del	upstream	D	88491733	88491740	1	18	379.576	-	-	6	1	1	ZNF469|CCDS45544.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF469|CCDS45544.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	10	5	10	0	0	./.	5	2	5	2	27	15	27	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760027991	16	88671097	GA	G	269	PASS	ZC3H18	CCDS10967.1	r.?	-	-	Del	intronic	D	88671097	88671107	1	12	270.523	-	-	9	1	1	ZC3H18|CCDS10967.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZC3H18|CCDS10967.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	3	26	29	26	29	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760028040	16	88813923	CA	C	360	PASS	ENSG00000182376	ENST00000333666	r.?	-	-	Del	downstream	D	88813923	88813932	1	12	325.351	-	-	8	1	1	ENSG00000182376|ENST00000333666|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000182376|ENST00000333666|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	9	11	9	0	0	./.	1	5	1	5	16	26	16	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760028077	16	88917765	CT	C	420	PASS	GALNS	CCDS10970.1	r.?	-	-	Del	intronic	D	88917765	88917775	1	18	378.372	-	-	9	1	1	GALNS|CCDS10970.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNS|CCDS10970.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	13	3	13	0	0	./.	2	5	3	5	21	21	21	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760028102	16	89044342	GA	G	540	PASS	CBFA2T3	CCDS10972.1	r.?	-	-	Del	upstream	D	89044342	89044350	1	28	488.026	-	-	7	1	1	CBFA2T3|CCDS10972.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CBFA2T3|CCDS10972.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	6	5	6	0	0	./.	6	3	7	5	35	26	35	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760028272	16	89577242	GT	G	300	PASS	SPG7	CCDS10977.1	r.?	-	-	Del	intronic	D	89577242	89577249	1	10	271.125	-	-	6	1	1	SPG7|CCDS10977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPG7|CCDS10977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	5	1	25	20	25	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760028367	16	89784120	CT	C	300	PASS	ZNF276	CCDS45554.1	r.?	-	-	Del	upstream	D	89784120	89784124	1	10	271.125	-	-	3	1	1	ZNF276|CCDS45554.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C16orf7|CCDS42220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	1	4	3	6	27	27	27	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029142	17	1234007	CA	C	509	PASS	-	-	-	-	-	Del	-	D	1234007	1234017	1	28	475.222	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	6	3	6	15	27	15	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029277	17	1431875	TA	T	311	PASS	PITPNA	CCDS45563.1	r.?	-	-	Del	intronic	D	1431875	1431883	1	15	325.244	-	-	7	1	1	PITPNA|CCDS45563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNA|CCDS45563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	4	2	19	20	19	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029322	17	1517547	AC	A	300	PASS	SLC43A2	CCDS11006.1	r.?	-	-	Del	intronic	D	1517547	1517549	1	10	271.036	-	-	1	1	1	SLC43A2|CCDS11006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC43A2|CCDS11006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	4	1	5	1	18	29	18	29	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029539	17	1904547	GT	G	300	PASS	RTN4RL1	CCDS45569.1	r.?	-	-	Del	intronic	D	1904547	1904557	1	12	270.434	-	-	9	1	1	RTN4RL1|CCDS45569.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RTN4RL1|CCDS45569.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	4	3	17	23	17	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029751	17	2442598	CT	C	300	PASS	-	-	-	-	-	Del	-	D	2442598	2442607	1	12	269.832	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	2	20	25	20	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029917	17	2774806	TG	T	360	PASS	RAP1GAP2	CCDS45573.1	r.?	-	-	Del	intronic	D	2774806	2774811	1	15	325.244	-	-	4	1	1	RAP1GAP2|CCDS45573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAP1GAP2|CCDS45573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	2	4	3	4	26	27	26	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760029919	17	2777249	TG	T	269	PASS	RAP1GAP2	CCDS45573.1	r.?	-	-	Del	intronic	D	2777249	2777259	1	6	269.23	-	-	9	1	1	RAP1GAP2|CCDS45573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAP1GAP2|CCDS45573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	5	0	6	0	31	6	31	6	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030166	17	3487578	CA	C	300	PASS	TRPV1	CCDS45576.1	r.?	-	-	Del	intronic	D	3487578	3487588	1	12	271.036	-	-	9	1	1	TRPV1|CCDS45576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPV1|CCDS45576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	3	25	18	25	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030313	17	3781043	AG	A	420	PASS	CAMKK1	CCDS11038.1	r.?	-	-	Del	intronic	D	3781043	3781050	1	18	378.849	-	-	6	1	1	CAMKK1|CCDS11038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMKK1|CCDS11038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	2	5	2	6	23	32	23	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030359	17	3974805	TA	T	420	PASS	ZZEF1	CCDS11043.1	r.?	-	-	Del	intronic	D	3974805	3974814	1	20	378.849	-	-	8	1	1	ZZEF1|CCDS11043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZZEF1|CCDS11043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	3	4	5	23	24	23	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030504	17	4284058	GC	G	277	PASS	-	-	-	-	-	Del	-	D	4284058	4284066	1	6	269.832	-	-	7	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	0	5	1	7	8	32	8	32	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030751	17	4704435	GCA	G	480	PASS	PSMB6	CCDS11056.1	r.?	-	-	Del	downstream	D	4704435	4704450	2	25	429.444	-	-	7	1	1	PSMB6|CCDS11056.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PSMB6|CCDS11056.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	10	6	10	0	0	./.	4	4	5	4	27	22	27	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030885	17	5004729	A	AG	360	PASS	ZNF232	CCDS11068.1	r.?	-	-	Ins	downstream	I	5004729	5004730	1	16	321.631	-	-	0	1	-	ZNF232|CCDS11068.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF232|CCDS11068.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	4	4	22	17	23	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030920	17	5082509	CCT	C	360	PASS	USP6	CCDS11069.2	r.?	-	-	Del	downstream	D	5082509	5082522	2	15	323.437	-	-	6	1	1	USP6|CCDS11069.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	USP6|CCDS11069.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	3	10	3	10	0	0	./.	4	2	4	3	21	17	21	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760030977	17	5169494	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	5169494	5169500	1	15	321.029	-	-	5	1	1	-	-	./.	0	0	0	0	23	9	23	9	0	0	./.	2	4	2	6	22	18	22	18	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031303	17	5898418	TG	T	540	PASS	-	-	-	-	-	Del	-	D	5898418	5898424	1	28	487.865	-	-	5	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	3	7	4	28	17	28	17	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031490	17	6462942	GC	G	480	PASS	PITPNM3	CCDS11076.1	r.?	-	-	Del	upstream	D	6462942	6462949	1	21	433.658	-	-	6	1	1	PITPNM3|CCDS11076.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PITPNM3|CCDS11076.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	13	7	13	0	0	./.	2	6	5	7	23	40	23	40	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031533	17	6622970	TG	T	300	PASS	-	-	-	-	-	Del	-	D	6622970	6622980	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	3	2	3	2	24	22	24	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031538	17	6656449	AC	A	300	PASS	XAF1	CCDS11080.1	r.?	-	-	Del	upstream	D	6656449	6656456	1	6	271.036	-	-	6	1	1	XAF1|CCDS11080.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	XAF1|CCDS11080.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	7	6	7	0	0	./.	0	5	0	5	21	24	21	24	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031586	17	6771544	GA	G	300	PASS	-	-	-	-	-	Del	-	D	6771544	6771552	1	6	271.036	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	0	6	1	21	17	21	17	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031704	17	7031483	CA	C	300	PASS	-	-	-	-	-	Del	-	D	7031483	7031493	1	6	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	5	0	7	1	23	7	23	7	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031720	17	7065882	CT	C	329	PASS	-	-	-	-	-	Del	-	D	7065882	7065891	1	15	324.039	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	4	5	17	12	17	12	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031748	17	7145813	G	GC	300	PASS	PHF23	CCDS42250.1	r.?	-	-	Ins	upstream	I	7145813	7145822	1	12	267.424	-	-	8	1	1	PHF23|CCDS42250.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PHF23|CCDS42250.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	5	8	5	0	0	./.	3	2	3	3	24	17	24	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031815	17	7316098	G	GA	300	PASS	NLGN2	CCDS11103.1	r.?	-	-	Ins	intronic	I	7316098	7316108	1	10	268.026	-	-	9	1	1	NLGN2|CCDS11103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NLGN2|CCDS11103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	1	4	6	4	27	25	27	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031920	17	7538614	CA	C	540	PASS	SHBG	CCDS11117.1	r.?	-	-	Del	downstream	D	7538614	7538624	1	28	487.865	-	-	9	1	-	SHBG|CCDS11117.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SHBG|CCDS11117.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	10	9	10	0	0	./.	6	3	6	3	32	29	32	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031935	17	7556715	G	GT	480	PASS	ATP1B2	CCDS32550.1	r.719_720insu	c.136_137insT	p.Y48fs*42	Ins	frameshift	I	7556715	7556722	1	24	428.842	-	-	6	1	1	ATP1B2|CCDS32550.1|r.719_720insu|c.136_137insT|p.Y48fs*42|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ATP1B2|CCDS32550.1|r.719_720insu|c.136_137insT|p.Y48fs*42|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	8	9	8	9	0	0	./.	5	3	6	5	40	15	40	15	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760031976	17	7635677	CG	C	387	PASS	DNAH2	CCDS32551.1	r.?	-	-	Del	intronic	D	7635677	7635684	1	25	433.658	-	-	6	1	1	DNAH2|CCDS32551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH2|CCDS32551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	4	5	5	21	16	21	16	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760032100	17	7931445	AAAAC	A	420	PASS	-	-	-	-	-	Del	-	D	7931445	7931465	4	20	378.849	-	-	4	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	4	4	4	35	27	35	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760032191	17	8131702	TCTC	T	298	PASS	C17orf68	CCDS42259.1	r.?	-	-	Del	intronic	D	8131702	8131710	3	7	324.039	-	-	2	1	1	C17orf68|CCDS42259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C17orf68|CCDS42259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	0	6	0	7	22	26	22	26	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760032361	17	8439859	G	GA	300	PASS	MYH10	CCDS11144.1	r.?	-	-	Ins	intronic	I	8439859	8439867	1	12	268.026	-	-	7	1	1	MYH10|CCDS11144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYH10|CCDS11144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	6	2	20	10	21	10	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760032470	17	8716773	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	8716773	8716782	1	10	268.026	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	1	4	1	29	12	29	13	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760032851	17	9528454	CA	C	360	PASS	WDR16	CCDS11149.2	r.?	-	-	Del	intronic	D	9528454	9528461	1	16	325.244	-	-	6	1	1	WDR16|CCDS11149.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR16|CCDS11149.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	3	3	5	3	26	21	26	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760032994	17	9886092	CA	C	360	PASS	GAS7	CCDS11152.1	r.?	-	-	Del	intronic	D	9886092	9886102	1	15	323.437	-	-	9	1	-	GAS7|CCDS11152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS7|CCDS11152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	4	4	4	24	26	24	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033075	17	10063589	TA	T	480	PASS	GAS7	CCDS11152.1	r.?	-	-	Del	intronic	D	10063589	10063599	1	16	433.658	-	-	9	1	1	GAS7|CCDS11152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS7|CCDS11152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	19	4	19	0	0	./.	1	7	1	8	15	25	15	25	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033080	17	10077095	GA	G	420	PASS	GAS7	CCDS11152.1	r.?	-	-	Del	intronic	D	10077095	10077105	1	20	364.399	-	-	9	1	1	GAS7|CCDS11152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS7|CCDS11152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	3	5	19	28	19	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033155	17	10193006	TC	T	420	PASS	-	-	-	-	-	Del	-	D	10193006	10193011	1	20	378.247	-	-	4	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	3	7	4	34	20	34	20	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033197	17	10347548	GA	G	360	PASS	MYH4	CCDS11154.1	r.?	-	-	Del	intronic	D	10347548	10347558	1	12	324.039	-	-	9	1	1	MYH4|CCDS11154.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYH4|CCDS11154.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	1	8	2	28	15	28	15	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033309	17	10679585	GA	G	329	PASS	-	-	-	-	-	Del	-	D	10679585	10679595	1	15	325.244	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	4	4	5	28	24	28	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033326	17	10712942	CA	C	840	PASS	-	-	-	-	-	Del	-	D	10712942	10712949	1	63	757.095	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	8	6	12	6	36	21	36	21	12	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033524	17	11300609	CT	C	300	PASS	SHISA6	CCDS45615.1	r.?	-	-	Del	intronic	D	11300609	11300618	1	12	262.607	-	-	8	1	1	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	2	3	2	5	19	20	19	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033556	17	11375459	G	GT	480	PASS	SHISA6	CCDS45615.1	r.?	-	-	Ins	intronic	I	11375459	11375466	1	24	422.219	-	-	6	1	1	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	3	7	4	36	26	36	26	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033617	17	11546220	GA	G	297	PASS	DNAH9	CCDS11160.1	r.?	-	-	Del	intronic	D	11546220	11546230	1	12	271.036	-	-	9	1	1	DNAH9|CCDS11160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH9|CCDS11160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	3	5	23	29	23	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033621	17	11563272	CT	C	360	PASS	DNAH9	CCDS11160.1	r.?	-	-	Del	intronic	D	11563272	11563278	1	7	325.244	-	-	5	1	1	DNAH9|CCDS11160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH9|CCDS11160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	0	6	0	7	6	34	6	34	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033682	17	11719568	CA	C	540	PASS	DNAH9	CCDS11160.1	r.?	-	-	Del	intronic	D	11719568	11719577	1	30	486.661	-	-	8	1	1	DNAH9|CCDS11160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH9|CCDS11160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	4	5	6	27	25	27	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033772	17	11961256	GT	G	298	PASS	MAP2K4	CCDS11162.1	r.?	-	-	Del	intronic	D	11961256	11961266	1	15	325.244	-	-	9	1	1	MAP2K4|CCDS11162.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP2K4|CCDS11162.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	6	3	16	14	16	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760033832	17	12107542	AT	A	509	PASS	-	-	-	-	-	Del	-	D	12107542	12107552	1	30	486.661	-	-	9	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	4	6	5	26	16	26	16	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034026	17	12690672	AT	A	360	PASS	ENSG00000006740	CCDS45616.1	r.?	-	-	Del	upstream	D	12690672	12690682	1	15	324.641	-	-	9	1	1	ENSG00000006740|CCDS45616.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AC005358.1|ENST00000501602|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	4	2	23	18	23	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034209	17	12999962	GT	G	600	PASS	-	-	-	-	-	Del	-	D	12999962	12999972	1	32	540.266	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	7	3	8	32	38	32	38	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034252	17	13164146	CA	C	360	PASS	-	-	-	-	-	Del	-	D	13164146	13164156	1	16	305.978	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	3	5	30	24	30	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034282	17	13236661	CT	C	720	PASS	-	-	-	-	-	Del	-	D	13236661	13236670	1	49	650.487	-	-	8	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	6	6	9	7	33	34	33	34	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034533	17	13846398	GGA	G	360	PASS	-	-	-	-	-	Del	-	D	13846398	13846403	2	15	325.244	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	4	2	4	23	15	23	15	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034545	17	13864413	CT	C	360	PASS	-	-	-	-	-	Del	-	D	13864413	13864422	1	15	325.244	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	4	3	6	33	28	33	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034653	17	14161544	AT	A	420	PASS	-	-	-	-	-	Del	-	D	14161544	14161553	1	20	379.451	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	5	5	22	27	22	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760034942	17	14920082	G	GT	389	PASS	-	-	-	-	-	Ins	-	I	14920082	14920091	1	18	369.216	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	2	5	4	6	20	42	20	42	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035230	17	15835056	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	15835056	15835066	1	36	589.055	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	8	3	10	5	34	20	34	20	10	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035248	17	15885064	GA	G	300	PASS	ZSWIM7	CCDS42266.1	r.?	-	-	Del	intronic	D	15885064	15885074	1	10	269.23	-	-	9	1	1	ZSWIM7|CCDS42266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZSWIM7|CCDS42266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	4	1	28	23	28	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035461	17	16255438	GT	G	300	PASS	CENPV	CCDS32575.1	r.?	-	-	Del	intronic	D	16255438	16255445	1	10	270.434	-	-	6	1	1	CENPV|CCDS32575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPV|CCDS32575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	4	1	5	1	29	23	29	23	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035462	17	16255933	CA	C	360	PASS	CENPV	CCDS32575.1	r.?	-	-	Del	intronic	D	16255933	16255943	1	15	325.244	-	-	9	1	1	CENPV|CCDS32575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPV|CCDS32575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	7	3	32	20	32	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035537	17	16407743	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	16407743	16407753	1	35	523.409	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	4	6	7	28	29	28	29	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035540	17	16418322	AT	A	300	PASS	-	-	-	-	-	Del	-	D	16418322	16418332	1	6	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	0	5	0	28	5	28	5	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035558	17	16472956	GA	G	300	PASS	ZNF287	CCDS11179.2	r.?	-	-	Del	upstream	D	16472956	16472964	1	10	271.036	-	-	7	1	1	ZNF287|CCDS11179.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZNF287|CCDS11179.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	3	5	23	26	23	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035656	17	16801241	GT	G	600	PASS	-	-	-	-	-	Del	-	D	16801241	16801247	1	35	542.073	-	-	5	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	4	6	4	19	23	19	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760035900	17	17433807	CA	C	360	PASS	PEMT	CCDS11187.1	r.?	-	-	Del	intronic	D	17433807	17433817	1	12	325.244	-	-	9	1	1	PEMT|CCDS11187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEMT|CCDS11187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	1	5	2	5	6	23	6	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036006	17	17689434	T	TC	420	PASS	RAI1	CCDS11188.1	r.?	-	-	Ins	intronic	I	17689434	17689443	1	18	372.226	-	-	8	1	1	RAI1|CCDS11188.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RAI1|CCDS11188.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	3	7	30	37	30	38	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036139	17	18087413	G	GC	360	PASS	ALKBH5	CCDS42272.1	r.125_126insc	c.?	p.?	Ins	5'UTR variant	I	18087413	18087420	1	12	320.427	-	-	6	1	1	ALKBH5|CCDS42272.1|r.125_126insc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	ALKBH5|CCDS42272.1|r.125_126insc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	13	5	13	5	0	0	./.	5	1	6	1	28	16	29	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036243	17	18492044	GA	G	267	PASS	-	-	-	-	-	Del	-	D	18492044	18492052	1	21	433.658	-	-	7	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	2	6	3	6	8	13	8	13	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036319	17	18677634	CT	C	600	PASS	FBXW10	CCDS11199.2	r.?	-	-	Del	intronic	D	18677634	18677639	1	36	541.471	-	-	4	1	1	FBXW10|CCDS11199.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW10|CCDS11199.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	5	5	7	6	28	34	28	34	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036473	17	19280643	C	CA	300	PASS	MAPK7	CCDS11206.1	r.?	-	-	Ins	upstream	I	19280643	19280650	1	6	268.026	-	-	6	1	1	MAPK7|CCDS11206.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	MAPK7|CCDS11206.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	14	11	14	11	0	0	./.	5	0	6	1	41	30	42	31	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036636	17	19675766	G	GA	540	PASS	ULK2	CCDS11213.1	r.?	-	-	Ins	downstream	I	19675766	19675773	1	28	478.834	-	-	6	1	1	ULK2|CCDS11213.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ULK2|CCDS11213.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	6	3	6	5	22	20	22	20	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036679	17	19770284	GA	G	360	PASS	ULK2	CCDS11213.1	r.?	-	-	Del	intronic	D	19770284	19770292	1	15	322.835	-	-	7	1	1	ULK2|CCDS11213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ULK2|CCDS11213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	8	5	31	32	31	32	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036800	17	20090039	TG	T	600	PASS	CYTSB	CCDS42280.1	r.?	-	-	Del	intronic	D	20090039	20090043	1	35	542.073	-	-	3	1	1	CYTSB|CCDS42280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTSB|CCDS42280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	6	4	7	4	27	29	27	29	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036810	17	20107042	GT	G	269	PASS	CYTSB	CCDS42280.1	r.?	-	-	Del	intronic	D	20107042	20107048	1	12	271.036	-	-	5	1	1	CYTSB|CCDS42280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTSB|CCDS42280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	5	19	29	19	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036830	17	20180703	CT	C	420	PASS	CYTSB	CCDS32590.1	r.?	-	-	Del	intronic	D	20180703	20180713	1	8	379.451	-	-	9	1	1	CYTSB|CCDS32590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTSB|CCDS32590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	0	7	1	8	12	30	12	30	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036966	17	20653058	CA	C	277	PASS	-	-	-	-	-	Del	-	D	20653058	20653068	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	5	3	35	11	35	11	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760036995	17	20717398	CA	C	300	PASS	-	-	-	-	-	Del	-	D	20717398	20717407	1	12	271.036	-	-	8	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	3	2	3	2	15	10	15	10	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760037403	17	21246145	CT	C	420	PASS	-	-	-	-	-	Del	-	D	21246145	21246148	1	20	377.043	-	-	2	1	1	-	-	./.	0	0	0	0	28	24	28	24	0	0	./.	4	3	5	3	73	85	73	85	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760037997	17	21790052	CA	C	600	PASS	AC138761.1	ENST00000507397	r.?	-	-	Del	intronic	D	21790052	21790061	1	36	542.073	-	-	8	1	1	AC138761.1|ENST00000507397|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC138761.1|ENST00000507397|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	5	5	8	6	25	25	25	25	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038035	17	21887284	AT	A	654	PASS	-	-	-	-	-	Del	-	D	21887284	21887294	1	30	592.065	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	9	2	10	3	29	12	29	12	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038046	17	21944457	G	GC	720	PASS	-	-	-	-	-	Ins	-	I	21944457	21944462	1	45	643.262	-	-	4	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	8	5	9	33	37	33	38	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038579	17	25669840	TG	T	300	PASS	-	-	-	-	-	Del	-	D	25669840	25669845	1	12	269.23	-	-	4	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	6	3	25	18	25	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038677	17	26016856	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	26016856	26016861	1	24	421.617	-	-	4	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	5	4	5	30	33	30	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038705	17	26099896	C	CA	360	PASS	NOS2	CCDS11223.1	r.?	-	-	Ins	intronic	I	26099896	26099905	1	16	321.631	-	-	8	1	1	NOS2|CCDS11223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NOS2|CCDS11223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	3	3	4	5	21	35	21	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038733	17	26209208	AT	A	420	PASS	C17orf108	CCDS45631.1	r.?	-	-	Del	intronic	D	26209208	26209214	1	20	379.451	-	-	5	1	1	C17orf108|CCDS45631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C17orf108|CCDS45631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	4	3	7	24	27	24	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038778	17	26354044	AT	A	540	PASS	ENSG00000235210	ENST00000421163	r.?	-	-	Del	upstream	D	26354044	26354051	1	30	487.865	-	-	6	1	1	ENSG00000235210|ENST00000421163|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000235210|ENST00000421163|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	19	9	19	9	0	0	./.	4	5	5	6	21	25	21	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760038909	17	26822869	G	GC	540	PASS	SLC13A2	CCDS11231.1	r.?	-	-	Ins	intronic	I	26822869	26822873	1	30	478.834	-	-	3	1	1	SLC13A2|CCDS11231.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC13A2|CCDS11231.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	4	7	4	27	31	27	32	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039008	17	27171680	GA	G	600	PASS	C17orf63	CCDS45637.1	r.?	-	-	Del	upstream	D	27171680	27171690	1	36	541.471	-	-	9	1	1	C17orf63|CCDS45637.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C17orf63|CCDS45637.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	12	16	12	0	0	./.	5	5	6	5	32	29	32	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039011	17	27179069	CA	C	300	PASS	ERAL1	CCDS11244.1	r.?	-	-	Del	upstream	D	27179069	27179077	1	12	270.434	-	-	7	1	1	ERAL1|CCDS11244.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ERAL1|CCDS11244.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	7	12	7	0	0	./.	3	2	5	5	10	23	10	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039013	17	27184299	A	AT	277	PASS	ERAL1	CCDS11244.1	r.?	-	-	Ins	intronic	I	27184299	27184305	1	12	262.607	-	-	5	1	1	ERAL1|CCDS11244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ERAL1|CCDS11244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	3	4	16	23	17	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039090	17	27451331	TTCTC	T	300	PASS	MYO18A	CCDS45642.1	r.?	-	-	Del	intronic	D	27451331	27451340	4	10	268.628	-	-	4	1	1	MYO18A|CCDS45642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO18A|CCDS45642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	1	4	1	33	13	33	13	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039148	17	27593928	CT	C	360	PASS	NUFIP2	CCDS32600.1	r.?	-	-	Del	intronic	D	27593928	27593938	1	12	325.244	-	-	9	1	1	NUFIP2|CCDS32600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUFIP2|CCDS32600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	3	11	3	0	0	./.	1	5	3	5	10	33	10	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039164	17	27627938	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	27627938	27627948	1	6	268.026	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	18	9	0	0	./.	5	0	7	0	31	4	31	5	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039217	17	27732798	GA	G	480	PASS	TAOK1	CCDS32601.1	r.?	-	-	Del	intronic	D	27732798	27732808	1	24	431.25	-	-	9	1	1	TAOK1|CCDS32601.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TAOK1|CCDS32601.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	5	4	6	27	34	27	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039260	17	27816526	TA	T	420	PASS	TAOK1	CCDS32601.1	r.?	-	-	Del	intronic	D	27816526	27816536	1	18	379.451	-	-	9	1	1	TAOK1|CCDS32601.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAOK1|CCDS32601.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	5	2	6	9	30	9	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039370	17	28172204	CTCT	C	360	PASS	SSH2	CCDS11253.1	r.?	-	-	Del	intronic	D	28172204	28172215	3	12	324.641	-	-	3	1	1	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	1	5	3	5	25	25	25	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039394	17	28233776	GA	G	300	PASS	SSH2	CCDS11253.1	r.?	-	-	Del	intronic	D	28233776	28233784	1	12	271.036	-	-	7	1	1	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	6	4	20	35	20	35	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039637	17	29136677	CT	C	420	PASS	CRLF3	CCDS32607.1	r.?	-	-	Del	intronic	D	29136677	29136687	1	18	379.451	-	-	9	1	1	CRLF3|CCDS32607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRLF3|CCDS32607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	2	5	3	5	30	28	30	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039736	17	29389293	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	29389293	29389302	1	10	266.22	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	4	3	28	21	29	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760039925	17	29938206	AT	A	269	PASS	-	-	-	-	-	Del	-	D	29938206	29938212	1	6	268.628	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	5	0	6	20	29	20	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040010	17	30128704	CT	C	540	PASS	-	-	-	-	-	Del	-	D	30128704	30128710	1	30	487.865	-	-	5	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	5	4	5	4	17	19	17	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040058	17	30216233	GA	G	420	PASS	UTP6	CCDS11269.1	r.?	-	-	Del	intronic	D	30216233	30216243	1	18	377.043	-	-	9	1	1	UTP6|CCDS11269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UTP6|CCDS11269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	5	2	6	32	23	32	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040325	17	30764826	CT	C	360	PASS	-	-	-	-	-	Del	-	D	30764826	30764835	1	12	325.244	-	-	8	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	5	1	6	2	25	29	25	29	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040360	17	30858690	CT	C	660	PASS	MYO1D	CCDS32615.1	r.?	-	-	Del	intronic	D	30858690	30858695	1	42	596.28	-	-	4	1	1	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	6	6	7	34	29	34	29	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040488	17	31192389	AT	A	480	PASS	MYO1D	CCDS32615.1	r.?	-	-	Del	intronic	D	31192389	31192399	1	21	433.658	-	-	9	1	1	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	6	2	7	4	26	22	26	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040523	17	31275282	AT	A	300	PASS	-	-	-	-	-	Del	-	D	31275282	31275292	1	10	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	4	1	6	1	25	3	25	3	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040564	17	31372660	GC	G	360	PASS	ACCN1	CCDS11276.1	r.?	-	-	Del	intronic	D	31372660	31372662	1	15	325.244	-	-	1	1	1	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	2	4	3	4	28	29	28	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040603	17	31536381	GA	G	420	PASS	ACCN1	CCDS11276.1	r.?	-	-	Del	intronic	D	31536381	31536391	1	14	379.451	-	-	9	1	1	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	6	1	8	3	30	19	30	19	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040660	17	31793499	GA	G	459	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	31793499	31793509	1	24	487.865	-	-	9	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	7	2	7	25	27	25	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040675	17	31870321	C	CA	300	PASS	ACCN1	CCDS42296.1	r.?	-	-	Ins	intronic	I	31870321	31870330	1	12	267.424	-	-	8	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	3	4	3	33	20	33	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040707	17	32007032	TG	T	300	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	32007032	32007039	1	10	271.036	-	-	6	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	1	4	1	25	26	25	26	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040752	17	32180006	TC	T	720	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	32180006	32180014	1	48	650.487	-	-	7	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	5	7	5	9	35	30	35	30	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040935	17	32841484	GT	G	480	PASS	-	-	-	-	-	Del	-	D	32841484	32841494	1	24	433.658	-	-	9	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	3	6	3	27	23	27	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760040985	17	33034142	TA	T	420	PASS	-	-	-	-	-	Del	-	D	33034142	33034150	1	18	379.451	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	2	6	3	20	28	20	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041067	17	33370181	GA	G	418	PASS	RFFL	CCDS11286.1	r.?	-	-	Del	intronic	D	33370181	33370189	1	25	433.658	-	-	7	1	1	RFFL|CCDS11286.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RFFL|CCDS11286.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	4	4	5	5	33	23	33	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041072	17	33383941	CT	C	389	PASS	RFFL	CCDS11286.1	r.?	-	-	Del	intronic	D	33383941	33383951	1	20	374.032	-	-	9	1	-	RFFL|CCDS11286.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RFFL|CCDS11286.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	6	6	27	23	27	23	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041125	17	33535917	TC	T	300	PASS	-	-	-	-	-	Del	-	D	33535917	33535923	1	12	271.036	-	-	5	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	3	2	28	13	28	13	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041222	17	33826054	T	TC	360	PASS	SLFN12L	CCDS45649.1	r.?	-	-	Ins	intronic	I	33826054	33826059	1	15	319.223	-	-	4	1	1	SLFN12L|CCDS45649.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLFN12L|CCDS45649.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	9	0	0	./.	2	4	3	4	19	25	20	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041304	17	34023326	CA	C	480	PASS	AP2B1	CCDS32621.1	r.?	-	-	Del	intronic	D	34023326	34023334	1	24	433.658	-	-	7	1	1	AP2B1|CCDS32621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP2B1|CCDS32621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	3	6	3	26	19	26	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041406	17	34330587	TA	T	300	PASS	CCL15	CCDS11304.1	r.?	-	-	Del	upstream	D	34330587	34330597	1	10	271.036	-	-	9	1	1	CCL15|CCDS11304.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CCL15|CCDS11304.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	4	10	4	0	0	./.	1	4	3	7	21	27	21	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041443	17	34444371	GT	G	300	PASS	-	-	-	-	-	Del	-	D	34444371	34444381	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	27	17	27	17	0	0	./.	3	2	4	3	47	43	47	43	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041454	17	34463533	CT	C	480	PASS	-	-	-	-	-	Del	-	D	34463533	34463541	1	25	433.658	-	-	7	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	4	4	5	5	55	30	55	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041456	17	34466045	CA	C	300	PASS	-	-	-	-	-	Del	-	D	34466045	34466051	1	12	271.036	-	-	5	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	2	3	3	4	17	36	17	36	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041655	17	35165547	AC	A	420	PASS	-	-	-	-	-	Del	-	D	35165547	35165553	1	18	378.849	-	-	5	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	5	2	6	3	31	30	31	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041669	17	35231448	GA	G	300	PASS	-	-	-	-	-	Del	-	D	35231448	35231457	1	10	271.036	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	8	5	30	25	30	25	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041799	17	35645808	CA	C	300	PASS	ACACA	CCDS11317.1	r.?	-	-	Del	intronic	D	35645808	35645818	1	10	271.036	-	-	9	1	1	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	1	4	2	7	29	26	29	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760041948	17	35933344	TA	T	389	PASS	SYNRG	CCDS11321.1	r.?	-	-	Del	intronic	D	35933344	35933353	1	20	366.808	-	-	8	1	1	SYNRG|CCDS11321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYNRG|CCDS11321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	3	4	4	21	22	21	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042179	17	36493495	G	GC	360	PASS	GPR179	CCDS42308.1	r.?	-	-	Ins	intronic	I	36493495	36493501	1	16	318.019	-	-	5	1	1	GPR179|CCDS42308.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR179|CCDS42308.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	3	3	3	4	20	27	21	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042182	17	36498765	GC	G	389	PASS	GPR179	CCDS42308.1	r.?	-	-	Del	intronic	D	36498765	36498772	1	14	377.645	-	-	6	1	1	GPR179|CCDS42308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR179|CCDS42308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	1	6	1	9	13	38	13	38	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042227	17	36636152	GGT	G	360	PASS	ARHGAP23	CCDS45659.1	r.?	-	-	Del	intronic	D	36636152	36636160	2	16	310.794	-	-	3	1	1	ARHGAP23|CCDS45659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP23|CCDS45659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	3	3	3	4	21	18	21	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042233	17	36650828	AT	A	300	PASS	ARHGAP23	CCDS45659.1	r.?	-	-	Del	intronic	D	36650828	36650831	1	12	271.036	-	-	2	1	1	ARHGAP23|CCDS45659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP23|CCDS45659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	5	2	28	30	28	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042569	17	37547295	C	CA	300	PASS	FBXL20	CCDS32640.1	r.?	-	-	Ins	intronic	I	37547295	37547305	1	12	268.026	-	-	9	1	1	FBXL20|CCDS32640.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXL20|CCDS32640.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	11	0	0	./.	2	3	2	5	9	33	11	34	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042787	17	38085624	AT	A	480	PASS	ORMDL3	CCDS11355.1	r.?	-	-	Del	upstream	D	38085624	38085634	1	24	433.658	-	-	9	1	1	ORMDL3|CCDS11355.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ORMDL3|CCDS11355.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	9	13	9	0	0	./.	3	5	5	5	23	24	23	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042854	17	38185264	AC	A	360	PASS	MED24	CCDS11359.1	r.?	-	-	Del	intronic	D	38185264	38185271	1	15	324.641	-	-	6	1	1	MED24|CCDS11359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MED24|CCDS11359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	2	5	2	25	26	25	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760042922	17	38355967	C	CA	300	PASS	RAPGEFL1	CCDS11363.1	r.?	-	-	Ins	downstream	I	38355967	38355975	1	12	257.189	-	-	7	1	1	RAPGEFL1|CCDS11363.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	RAPGEFL1|CCDS11363.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	2	27	24	28	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043048	17	38718719	TC	T	300	PASS	CCR7	CCDS11369.1	r.?	-	-	Del	intronic	D	38718719	38718725	1	10	263.21	-	-	5	1	1	CCR7|CCDS11369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCR7|CCDS11369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	5	3	34	23	34	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043341	17	39529784	GT	G	480	PASS	KRT34	CCDS11390.1	r.?	-	-	Del	downstream	D	39529784	39529794	1	25	433.658	-	-	9	1	1	KRT34|CCDS11390.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KRT33B|CCDS11389.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	14	12	14	0	0	./.	4	4	4	6	27	29	27	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043342	17	39530327	GA	G	360	PASS	KRT34	CCDS11390.1	r.?	-	-	Del	downstream	D	39530327	39530335	1	15	325.244	-	-	7	1	1	KRT34|CCDS11390.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KRT33B|CCDS11389.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	5	11	5	0	0	./.	4	2	5	3	22	21	22	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043384	17	39638819	CT	C	300	PASS	KRT35	CCDS11394.2	r.?	-	-	Del	upstream	D	39638819	39638829	1	12	269.832	-	-	9	1	1	KRT35|CCDS11394.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KRT35|CCDS11394.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	2	19	34	19	34	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043411	17	39726475	GA	G	360	PASS	KRT9	CCDS32654.1	r.709-4delu	c.643-4delt	p.?	Del	splice region	D	39726475	39726485	1	12	325.244	-	-	9	1	1	KRT9|CCDS32654.1|r.709-4delu|c.643-4delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	KRT9|CCDS32654.1|r.709-4delu|c.643-4delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	8	7	8	7	0	0	./.	1	5	2	5	21	23	21	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043511	17	39916138	A	AT	300	PASS	JUP	CCDS11407.1	r.?	-	-	Ins	intronic	I	39916138	39916148	1	6	268.026	-	-	9	1	1	JUP|CCDS11407.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JUP|CCDS11407.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	16	5	16	0	0	./.	0	5	0	7	3	37	4	37	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043665	17	40259224	A	AT	480	PASS	DHX58	CCDS11416.1	r.?	-	-	Ins	intronic	I	40259224	40259233	1	25	428.842	-	-	8	1	1	DHX58|CCDS11416.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DHX58|CCDS11416.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	4	5	4	21	27	21	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043814	17	40646262	A	AG	360	PASS	ATP6V0A1	CCDS45683.1	r.?	-	-	Ins	intronic	I	40646262	40646269	1	15	321.631	-	-	6	1	1	ATP6V0A1|CCDS45683.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP6V0A1|CCDS45683.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	2	5	3	31	31	31	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760043891	17	40824341	GC	G	300	PASS	PLEKHH3	CCDS11434.1	r.1305delG	c.838delG	p.A280fs*7	Del	frameshift	D	40824341	40824347	1	12	271.036	-	-	5	1	1	PLEKHH3|CCDS11434.1|r.1305delG|c.838delG|p.A280fs*7|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PLEKHH3|CCDS11434.1|r.1305delG|c.838delG|p.A280fs*7|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	3	2	19	15	19	15	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760044029	17	41138523	CT	C	329	PASS	RUNDC1	CCDS11448.1	r.?	-	-	Del	intronic	D	41138523	41138533	1	15	322.233	-	-	9	1	1	RUNDC1|CCDS11448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUNDC1|CCDS11448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	4	2	7	3	26	23	26	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760044224	17	41456300	TG	T	300	PASS	ENSG00000188825	ENST00000418911	r.?	-	-	Del	intronic	D	41456300	41456309	1	12	271.036	-	-	8	1	1	ENSG00000188825|ENST00000418911|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000188825|ENST00000418911|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	2	4	4	30	22	30	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760044277	17	41573983	TA	T	300	PASS	DHX8	CCDS11464.1	r.?	-	-	Del	intronic	D	41573983	41573991	1	6	271.036	-	-	7	1	1	DHX8|CCDS11464.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DHX8|CCDS11464.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	0	5	1	5	25	26	25	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760044351	17	41755551	AT	A	360	PASS	-	-	-	-	-	Del	-	D	41755551	41755561	1	12	325.244	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	1	6	1	22	15	22	15	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760044352	17	41756210	TG	T	480	PASS	-	-	-	-	-	Del	-	D	41756210	41756217	1	21	433.658	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	2	8	4	25	26	25	26	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760044999	17	43194155	TG	T	480	PASS	PLCD3	ENST00000322765	r.1375-5delc	c.1261-5delc	p.?	Del	splice region	D	43194155	43194162	1	24	427.637	-	-	6	1	1	PLCD3|ENST00000322765|r.1375-5delc|c.1261-5delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	PLCD3|ENST00000322765|r.1375-5delc|c.1261-5delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	9	7	9	7	0	0	./.	3	5	3	5	25	22	25	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760045219	17	43718687	CA	C	480	PASS	C17orf69	ENST00000300525	r.?	-	-	Del	intronic	D	43718687	43718696	1	24	432.454	-	-	8	1	1	C17orf69|ENST00000300525|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C17orf69|ENST00000300525|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	3	5	4	7	27	35	27	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760045385	17	43990945	CAGG	C	298	PASS	MAPT	CCDS45715.1	r.?	-	-	Del	intronic	D	43990945	43990954	3	16	323.437	-	-	2	1	1	MAPT|CCDS45715.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAPT|CCDS45715.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	4	3	28	30	28	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760045618	17	44237832	CT	C	300	PASS	KIAA1267	CCDS11503.1	r.?	-	-	Del	intronic	D	44237832	44237841	1	12	271.036	-	-	8	1	1	KIAA1267|CCDS11503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1267|CCDS11503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	16	27	16	0	0	./.	3	2	3	2	33	36	33	36	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046276	17	45666788	AT	A	263	PASS	NPEPPS	CCDS45721.1	r.?	-	-	Del	intronic	D	45666788	45666798	1	12	271.036	-	-	9	1	1	NPEPPS|CCDS45721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPEPPS|CCDS45721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	3	4	4	17	4	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046592	17	46559571	TA	T	300	PASS	-	-	-	-	-	Del	-	D	46559571	46559579	1	12	271.036	-	-	7	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	3	2	3	2	32	17	32	17	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046596	17	46567436	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	46567436	46567442	1	18	375.236	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	2	7	2	25	34	25	34	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046606	17	46587929	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	46587929	46587935	1	6	268.026	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	0	7	0	30	4	30	4	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046670	17	46754437	AT	A	296	PASS	-	-	-	-	-	Del	-	D	46754437	46754447	1	14	378.849	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	6	1	6	13	36	13	37	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046715	17	46880232	C	CA	300	PASS	TTLL6	CCDS45724.1	r.?	-	-	Ins	intronic	I	46880232	46880241	1	12	266.822	-	-	8	1	1	TTLL6|CCDS45724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTLL6|CCDS45724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	3	23	28	23	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046747	17	46942612	CT	C	420	PASS	CALCOCO2	CCDS11538.1	r.?	-	-	Del	downstream	D	46942612	46942621	1	20	379.451	-	-	8	1	1	CALCOCO2|CCDS11538.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	CALCOCO2|CCDS11538.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	11	11	11	0	0	./.	4	3	5	3	23	22	30	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760046970	17	47378664	CT	C	540	PASS	ZNF652	CCDS32677.1	r.?	-	-	Del	intronic	D	47378664	47378674	1	30	486.661	-	-	9	1	1	ZNF652|CCDS32677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF652|CCDS32677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	4	6	5	28	27	28	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047106	17	47775222	AAC	A	269	PASS	SLC35B1	CCDS11552.1	r.?	-	-	Del	downstream	D	47775222	47775226	2	10	260.199	-	-	1	1	1	SLC35B1|CCDS11552.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC35B1|CCDS11552.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	14	8	14	0	0	./.	1	4	2	3	28	33	28	33	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047123	17	47833535	CT	C	480	PASS	FAM117A	CCDS11553.1	r.?	-	-	Del	intronic	D	47833535	47833545	1	25	433.658	-	-	9	1	1	FAM117A|CCDS11553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM117A|CCDS11553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	4	4	5	5	25	27	25	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047385	17	48483056	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	48483056	48483066	2	12	324.641	-	-	4	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	5	1	6	1	29	20	29	20	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047424	17	48570191	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	48570191	48570201	1	12	318.019	-	-	9	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	5	1	5	1	27	14	27	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047491	17	48767081	AC	A	420	PASS	ABCC3	CCDS32681.1	r.?	-	-	Del	intronic	D	48767081	48767088	1	20	379.451	-	-	6	1	1	ABCC3|CCDS32681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC3|CCDS32681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	4	5	7	26	22	26	22	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047609	17	49012865	CTATT	C	420	PASS	-	-	-	-	-	Del	-	D	49012865	49012872	4	18	375.236	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	2	5	3	19	35	19	35	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760047672	17	49193189	CA	C	300	PASS	SPAG9	CCDS45740.1	r.?	-	-	Del	intronic	D	49193189	49193199	1	10	270.434	-	-	9	1	-	SPAG9|CCDS45740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG9|CCDS45740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	6	2	29	23	29	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048068	17	50338888	CT	C	300	PASS	-	-	-	-	-	Del	-	D	50338888	50338896	1	12	271.036	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	2	3	3	7	29	28	29	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048083	17	50372035	TA	T	360	PASS	-	-	-	-	-	Del	-	D	50372035	50372045	1	12	325.244	-	-	9	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	1	5	1	5	4	16	4	16	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048259	17	50898179	TG	T	480	PASS	-	-	-	-	-	Del	-	D	50898179	50898187	1	21	430.046	-	-	7	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	2	7	3	28	14	28	14	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048474	17	51664177	CA	C	449	PASS	-	-	-	-	-	Del	-	D	51664177	51664185	1	25	433.658	-	-	7	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	4	5	4	22	18	22	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048601	17	52325837	TA	T	360	PASS	-	-	-	-	-	Del	-	D	52325837	52325845	1	7	325.244	-	-	7	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	0	6	0	8	0	27	0	27	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048719	17	52795544	CT	C	420	PASS	-	-	-	-	-	Del	-	D	52795544	52795553	1	14	379.451	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	1	6	1	22	8	22	8	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048821	17	53119099	CT	C	600	PASS	STXBP4	CCDS11584.2	r.?	-	-	Del	intronic	D	53119099	53119109	1	35	542.073	-	-	9	1	1	STXBP4|CCDS11584.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP4|CCDS11584.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	6	4	8	5	27	30	27	30	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760048918	17	53456256	TA	T	300	PASS	-	-	-	-	-	Del	-	D	53456256	53456265	1	12	269.832	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	3	3	28	20	28	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049243	17	54681833	AT	A	420	PASS	-	-	-	-	-	Del	-	D	54681833	54681841	1	20	379.451	-	-	7	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	4	3	4	4	28	30	28	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049262	17	54762972	TA	T	360	PASS	-	-	-	-	-	Del	-	D	54762972	54762982	1	7	325.244	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	6	0	9	2	32	21	32	21	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049271	17	54790601	GA	G	300	PASS	-	-	-	-	-	Del	-	D	54790601	54790611	1	10	270.434	-	-	9	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	4	1	5	1	24	21	24	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049646	17	55632966	AC	A	420	PASS	MSI2	CCDS11597.1	r.?	-	-	Del	intronic	D	55632966	55632972	1	18	377.645	-	-	5	1	1	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	2	7	4	30	34	30	34	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049654	17	55663708	GTC	G	300	PASS	MSI2	CCDS11597.1	r.?	-	-	Del	intronic	D	55663708	55663728	2	10	268.628	-	-	9	1	1	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	1	4	2	4	24	31	24	31	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049709	17	55812907	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	55812907	55812915	1	16	321.631	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	6	4	34	27	35	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760049854	17	56226776	CTCTT	C	269	PASS	-	-	-	-	-	Del	-	D	56226776	56226785	4	12	271.036	-	-	2	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	6	3	25	18	25	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050032	17	56711386	GA	G	360	PASS	TEX14	CCDS32693.1	r.?	-	-	Del	intronic	D	56711386	56711391	1	15	325.244	-	-	4	1	1	TEX14|CCDS32693.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEX14|CCDS32693.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	4	4	5	31	39	31	39	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050072	17	56767937	G	GT	300	PASS	TEX14	CCDS32693.1	r.?	-	-	Ins	intronic	I	56767937	56767944	1	12	266.22	-	-	6	1	1	TEX14|CCDS32693.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TEX14|CCDS32693.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	3	6	5	39	34	39	36	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050184	17	57079386	CTG	C	420	PASS	TRIM37	CCDS32694.1	r.?	-	-	Del	intronic	D	57079386	57079390	2	18	378.849	-	-	1	1	1	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	2	5	3	5	11	14	11	14	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050269	17	57279342	CA	C	360	PASS	PRR11	CCDS11614.1	r.1505delA	c.?	p.?	Del	3'UTR variant	D	57279342	57279351	1	16	324.039	-	-	8	1	1	PRR11|CCDS11614.1|r.1505delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PRR11|CCDS11614.1|r.1505delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	4	6	13	33	13	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050279	17	57306331	TA	T	300	PASS	GDPD1	CCDS11616.1	r.?	-	-	Del	intronic	D	57306331	57306341	1	6	271.036	-	-	9	1	1	GDPD1|CCDS11616.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDPD1|CCDS11616.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	0	5	0	6	0	23	0	23	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050343	17	57463195	CA	C	420	PASS	YPEL2	CCDS32695.1	r.?	-	-	Del	intronic	D	57463195	57463204	1	20	376.441	-	-	8	1	1	YPEL2|CCDS32695.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YPEL2|CCDS32695.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	4	7	14	20	14	20	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050578	17	58007880	CT	C	480	PASS	RPS6KB1	CCDS11621.1	r.?	-	-	Del	intronic	D	58007880	58007890	1	25	430.046	-	-	9	1	1	RPS6KB1|CCDS11621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS6KB1|CCDS11621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	4	5	20	25	20	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050590	17	58025335	AT	A	269	PASS	RPS6KB1	CCDS11621.1	r.2786delU	c.?	p.?	Del	3'UTR variant	D	58025335	58025345	1	10	271.036	-	-	9	1	1	RPS6KB1|CCDS11621.1|r.2786delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RPS6KB1|CCDS11621.1|r.2786delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	4	2	19	15	19	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050599	17	58040647	TA	T	300	PASS	RNFT1	CCDS11622.2	r.113-3delu	c.57-3delt	p.?	Del	splice region	D	58040647	58040654	1	12	271.036	-	-	6	1	1	RNFT1|CCDS11622.2|r.113-3delu|c.57-3delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	RNFT1|CCDS11622.2|r.113-3delu|c.57-3delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	7	28	31	28	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050725	17	58536431	CA	C	269	PASS	APPBP2	CCDS32699.1	r.?	-	-	Del	intronic	D	58536431	58536440	1	10	271.036	-	-	8	1	1	APPBP2|CCDS32699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APPBP2|CCDS32699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	4	1	6	1	18	16	18	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050732	17	58573670	GA	G	300	PASS	APPBP2	CCDS32699.1	r.?	-	-	Del	intronic	D	58573670	58573679	1	12	271.036	-	-	8	1	1	APPBP2|CCDS32699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APPBP2|CCDS32699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	4	22	20	22	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050774	17	58709228	GT	G	300	PASS	PPM1D	CCDS11625.1	r.?	-	-	Del	intronic	D	58709228	58709235	1	12	271.036	-	-	6	1	1	PPM1D|CCDS11625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPM1D|CCDS11625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	3	2	25	12	25	12	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050785	17	58751722	TC	T	300	PASS	BCAS3	ENST00000360207	r.?	-	-	Del	upstream	D	58751722	58751725	1	12	270.434	-	-	2	1	1	BCAS3|ENST00000360207|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BCAS3|ENST00000360207|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	5	4	22	29	22	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760050829	17	58848598	AT	A	329	PASS	BCAS3	CCDS45749.1	r.?	-	-	Del	intronic	D	58848598	58848608	1	12	325.244	-	-	9	1	1	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	1	5	3	6	15	17	15	17	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051073	17	59630471	TA	T	300	PASS	-	-	-	-	-	Del	-	D	59630471	59630478	1	12	269.832	-	-	6	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	3	4	25	26	25	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051166	17	59887180	GT	G	300	PASS	BRIP1	CCDS11631.1	r.?	-	-	Del	intronic	D	59887180	59887190	1	12	271.036	-	-	9	1	1	BRIP1|CCDS11631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRIP1|CCDS11631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	3	2	4	2	30	15	30	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051199	17	59983049	CT	C	329	PASS	INTS2	CCDS45750.1	r.?	-	-	Del	intronic	D	59983049	59983058	1	16	325.244	-	-	8	1	1	INTS2|CCDS45750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INTS2|CCDS45750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	3	4	3	25	19	25	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051228	17	60105914	TA	T	276	PASS	MED13	CCDS42366.1	r.?	-	-	Del	intronic	D	60105914	60105924	1	10	271.036	-	-	9	1	1	MED13|CCDS42366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MED13|CCDS42366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	1	4	4	5	15	25	15	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051399	17	60492480	CA	C	300	PASS	ENSG00000172421	CCDS45751.1	r.?	-	-	Del	intronic	D	60492480	60492490	1	12	271.036	-	-	9	1	-	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	3	2	4	3	34	27	34	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051496	17	60736117	A	AT	300	PASS	MRC2	CCDS11634.1	r.?	-	-	Ins	intronic	I	60736117	60736125	1	10	268.026	-	-	7	1	1	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	1	4	1	6	30	35	30	35	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051506	17	60751828	AC	A	420	PASS	MRC2	CCDS11634.1	r.?	-	-	Del	intronic	D	60751828	60751834	1	18	379.451	-	-	5	1	1	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	2	5	3	5	18	24	18	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051533	17	60802633	CT	C	420	PASS	MARCH10	CCDS11635.1	r.?	-	-	Del	intronic	D	60802633	60802643	1	20	377.645	-	-	9	1	1	MARCH10|CCDS11635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH10|CCDS11635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	3	4	6	4	27	27	27	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051548	17	60839465	CA	C	300	PASS	MARCH10	CCDS11635.1	r.?	-	-	Del	intronic	D	60839465	60839467	1	12	271.036	-	-	1	1	1	MARCH10|CCDS11635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH10|CCDS11635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	5	4	20	26	20	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051645	17	61116492	TA	T	300	PASS	TANC2	CCDS45754.1	r.?	-	-	Del	intronic	D	61116492	61116499	1	12	271.036	-	-	6	1	1	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	2	4	20	16	20	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051710	17	61371839	GA	G	420	PASS	TANC2	CCDS45754.1	r.?	-	-	Del	intronic	D	61371839	61371849	1	20	379.451	-	-	9	1	1	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	4	3	5	4	26	37	26	37	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051729	17	61440287	GT	G	420	PASS	TANC2	CCDS45754.1	r.?	-	-	Del	intronic	D	61440287	61440296	1	18	378.849	-	-	8	1	1	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	5	2	8	11	31	11	31	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051763	17	61614970	AT	A	540	PASS	KCNH6	CCDS11638.1	r.?	-	-	Del	intronic	D	61614970	61614978	1	30	487.865	-	-	7	1	1	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	5	4	9	5	34	21	34	21	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051797	17	61725492	TA	T	329	PASS	MAP3K3	CCDS32701.1	r.?	-	-	Del	intronic	D	61725492	61725498	1	15	325.244	-	-	5	1	1	MAP3K3|CCDS32701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP3K3|CCDS32701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	10	3	10	0	0	./.	2	4	3	6	21	32	21	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051825	17	61781803	CG	C	449	PASS	STRADA	CCDS32703.1	r.1156delC	c.997delC	p.R333fs*42	Del	frameshift	D	61781803	61781810	1	21	431.25	-	-	6	1	1	STRADA|CCDS32703.1|r.1156delC|c.997delC|p.R333fs*42|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	STRADA|CCDS32703.1|r.1156delC|c.997delC|p.R333fs*42|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	13	6	13	0	0	./.	6	2	7	3	25	18	25	18	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051850	17	61821842	CA	C	780	PASS	CCDC47	CCDS11643.1	r.?	-	-	Del	downstream	D	61821842	61821851	1	54	695.663	-	-	8	1	1	CCDC47|CCDS11643.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	STRADA|CCDS11642.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	10	9	10	0	0	./.	5	8	5	11	25	23	25	23	5	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051863	17	61843791	CT	C	300	PASS	CCDC47	CCDS11643.1	r.?	-	-	Del	intronic	D	61843791	61843801	1	12	271.036	-	-	9	1	1	CCDC47|CCDS11643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC47|CCDS11643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	4	4	24	25	24	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051913	17	61933747	GT	G	420	PASS	-	-	-	-	-	Del	-	D	61933747	61933757	1	20	379.451	-	-	9	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	3	6	3	24	23	24	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760051944	17	61992327	CA	C	334	PASS	CSHL1	CCDS11652.1	r.?	-	-	Del	upstream	D	61992327	61992337	1	20	372.226	-	-	9	1	1	CSHL1|CCDS11652.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CSHL1|CCDS11652.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	6	14	6	0	0	./.	3	4	3	7	14	28	14	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052070	17	62323977	TA	T	480	PASS	TEX2	CCDS11658.1	r.?	-	-	Del	intronic	D	62323977	62323985	1	24	431.852	-	-	7	1	1	TEX2|CCDS11658.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TEX2|CCDS11658.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	5	6	6	32	28	32	28	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052092	17	62364519	CT	C	300	PASS	-	-	-	-	-	Del	-	D	62364519	62364529	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	2	3	3	3	23	21	23	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052124	17	62490694	TC	T	534	PASS	POLG2	CCDS32706.1	r.?	-	-	Del	intronic	D	62490694	62490701	1	28	487.865	-	-	6	1	1	POLG2|CCDS32706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLG2|CCDS32706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	3	7	4	36	22	36	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052207	17	62755309	C	CA	360	PASS	ENSG00000215769	ENST00000400873	r.?	-	-	Ins	intronic	I	62755309	62755318	1	15	318.019	-	-	8	1	1	ENSG00000215769|ENST00000400873|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000215769|ENST00000400873|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	6	5	30	28	31	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052293	17	62969192	TA	T	629	PASS	-	-	-	-	-	Del	-	D	62969192	62969202	1	42	596.28	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	5	6	7	6	23	21	23	21	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052328	17	63038854	CA	C	480	PASS	GNA13	CCDS11661.1	r.?	-	-	Del	intronic	D	63038854	63038864	1	24	433.658	-	-	9	1	1	GNA13|CCDS11661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNA13|CCDS11661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	5	3	8	10	43	10	43	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052448	17	63406022	TA	T	420	PASS	-	-	-	-	-	Del	-	D	63406022	63406030	1	14	379.451	-	-	7	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	6	1	6	22	37	22	37	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052503	17	63512910	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	63512910	63512918	1	15	321.029	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	2	8	2	29	25	29	25	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052523	17	63553774	CA	C	300	PASS	AXIN2	CCDS11662.1	r.?	-	-	Del	intronic	D	63553774	63553780	1	12	271.036	-	-	5	1	1	AXIN2|CCDS11662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AXIN2|CCDS11662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	5	2	38	32	38	32	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052787	17	64097926	GA	G	480	PASS	CCDC46	CCDS32710.1	r.?	-	-	Del	intronic	D	64097926	64097936	1	24	433.658	-	-	9	1	1	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	5	3	7	3	15	18	15	18	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052865	17	64273339	GA	G	569	PASS	-	-	-	-	-	Del	-	D	64273339	64273349	1	35	525.215	-	-	9	1	-	-	-	./.	0	0	0	0	4	18	4	18	0	0	./.	6	4	8	9	29	34	29	34	8	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052895	17	64297849	TAA	T	480	PASS	PRKCA	CCDS11664.1	r.?	-	-	Del	upstream	D	64297849	64297854	2	25	433.658	-	-	4	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	20	7	20	0	0	./.	4	4	4	4	33	32	33	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760052998	17	64518940	AAG	A	300	PASS	PRKCA	CCDS11664.1	r.?	-	-	Del	intronic	D	64518940	64518944	2	6	263.21	-	-	1	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	5	1	26	24	26	24	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053086	17	64762114	GA	G	600	PASS	PRKCA	CCDS11664.1	r.?	-	-	Del	intronic	D	64762114	64762121	1	35	542.073	-	-	6	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	4	6	7	6	36	28	36	28	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053090	17	64776793	C	CA	420	PASS	PRKCA	CCDS11664.1	r.?	-	-	Ins	intronic	I	64776793	64776802	1	20	374.032	-	-	8	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	4	3	4	4	21	37	22	37	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053174	17	65043330	GA	G	600	PASS	CACNG1	CCDS11668.1	r.?	-	-	Del	intronic	D	65043330	65043339	1	32	542.073	-	-	8	1	1	CACNG1|CCDS11668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNG1|CCDS11668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	3	7	4	7	26	30	26	30	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053331	17	65357696	TA	T	480	PASS	PSMD12	CCDS11669.1	r.?	-	-	Del	intronic	D	65357696	65357706	1	21	433.658	-	-	9	1	1	PSMD12|CCDS11669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMD12|CCDS11669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	2	6	2	7	8	37	8	37	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053388	17	65460787	CA	C	840	PASS	PITPNC1	ENST00000423236	r.?	-	-	Del	intronic	D	65460787	65460795	1	60	758.902	-	-	7	1	1	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	9	9	13	38	39	38	39	9	13	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053440	17	65558655	CT	C	720	PASS	PITPNC1	ENST00000423236	r.?	-	-	Del	intronic	D	65558655	65558665	1	45	648.079	-	-	9	1	1	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	8	7	10	28	31	28	31	7	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053521	17	65711866	GA	G	600	PASS	NOL11	CCDS11671.1	r.?	-	-	Del	upstream	D	65711866	65711876	1	35	537.256	-	-	9	1	1	NOL11|CCDS11671.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NOL11|CCDS11671.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	12	10	12	0	0	./.	4	6	5	8	23	27	23	27	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053539	17	65744658	CA	C	600	PASS	NOL11	CCDS11671.1	r.?	-	-	Del	downstream	D	65744658	65744668	1	35	541.471	-	-	9	1	1	NOL11|CCDS11671.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NOL11|CCDS11671.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	9	13	9	0	0	./.	4	6	7	8	34	23	34	23	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053567	17	65774732	CA	C	356	PASS	-	-	-	-	-	Del	-	D	65774732	65774742	1	24	432.454	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	6	3	26	18	26	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053610	17	65856599	TA	T	480	PASS	BPTF	CCDS11673.1	r.?	-	-	Del	intronic	D	65856599	65856607	1	16	433.658	-	-	7	1	1	BPTF|CCDS11673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BPTF|CCDS11673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	7	1	9	1	21	4	21	4	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053739	17	66137214	GT	G	600	PASS	-	-	-	-	-	Del	-	D	66137214	66137220	1	32	541.471	-	-	5	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	7	3	7	3	32	32	32	32	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053748	17	66168297	AAAAG	A	420	PASS	-	-	-	-	-	Del	-	D	66168297	66168306	4	20	376.44	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	4	5	7	24	43	24	43	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053801	17	66279266	TA	T	358	PASS	ARSG	CCDS11676.1	r.?	-	-	Del	intronic	D	66279266	66279275	1	14	378.849	-	-	8	1	1	ARSG|CCDS11676.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ARSG|CCDS11676.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	1	10	3	21	21	21	21	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053854	17	66430609	ACT	A	300	PASS	WIPI1	CCDS11677.1	r.?	-	-	Del	intronic	D	66430609	66430616	2	12	271.036	-	-	3	1	1	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	3	3	38	35	38	35	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053899	17	66554173	GT	G	840	PASS	FAM20A	CCDS11679.1	r.?	-	-	Del	intronic	D	66554173	66554182	1	63	757.697	-	-	8	1	1	FAM20A|CCDS11679.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM20A|CCDS11679.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	8	6	12	10	39	34	39	34	12	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760053944	17	66636909	AT	A	300	PASS	-	-	-	-	-	Del	-	D	66636909	66636919	1	10	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	1	4	1	4	8	26	8	26	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054078	17	67052066	GA	G	360	PASS	ABCA9	CCDS11681.1	r.?	-	-	Del	intronic	D	67052066	67052074	1	7	325.244	-	-	7	1	1	ABCA9|CCDS11681.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABCA9|CCDS11681.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	0	6	0	6	4	32	4	32	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054122	17	67221740	AT	A	360	PASS	ABCA10	CCDS11684.1	r.?	-	-	Del	intronic	D	67221740	67221746	1	16	322.835	-	-	5	1	1	ABCA10|CCDS11684.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABCA10|CCDS11684.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	5	4	26	27	26	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054154	17	67342570	AT	A	540	PASS	-	-	-	-	-	Del	-	D	67342570	67342580	1	30	487.263	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	5	4	26	11	26	11	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054253	17	67589491	AT	A	300	PASS	-	-	-	-	-	Del	-	D	67589491	67589501	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	5	2	24	24	24	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054286	17	67703227	CT	C	269	PASS	-	-	-	-	-	Del	-	D	67703227	67703237	1	12	268.628	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	3	4	28	25	28	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054535	17	68412024	CA	C	540	PASS	-	-	-	-	-	Del	-	D	68412024	68412031	1	30	487.865	-	-	6	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	5	4	5	5	28	19	28	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054622	17	68668223	CG	C	300	PASS	-	-	-	-	-	Del	-	D	68668223	68668225	1	12	263.812	-	-	1	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	3	2	4	4	16	18	16	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054751	17	68983975	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	68983975	68983978	2	6	271.036	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	0	7	0	28	4	28	4	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760054852	17	69242234	CA	C	300	PASS	-	-	-	-	-	Del	-	D	69242234	69242243	1	12	269.832	-	-	8	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	3	2	4	6	26	32	26	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055059	17	69939269	T	TG	600	PASS	-	-	-	-	-	Ins	-	I	69939269	69939274	1	35	534.848	-	-	4	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	6	4	7	5	32	30	32	30	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055126	17	70226435	GT	G	300	PASS	-	-	-	-	-	Del	-	D	70226435	70226445	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	3	2	4	2	22	12	22	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055243	17	70542569	CT	C	540	PASS	-	-	-	-	-	Del	-	D	70542569	70542579	1	24	487.865	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	7	3	7	26	25	26	25	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055253	17	70557369	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	70557369	70557376	1	18	375.236	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	5	3	5	24	26	24	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055678	17	71423225	TA	T	360	PASS	SDK2	CCDS45769.1	r.?	-	-	Del	intronic	D	71423225	71423235	1	12	324.039	-	-	9	1	1	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	1	5	2	34	25	34	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055704	17	71468717	AT	A	480	PASS	SDK2	CCDS45769.1	r.?	-	-	Del	intronic	D	71468717	71468727	1	24	433.658	-	-	9	1	1	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	11	3	11	0	0	./.	5	3	6	3	31	25	31	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760055783	17	71790828	TG	T	300	PASS	C17orf54	ENST00000444747	r.?	-	-	Del	intronic	D	71790828	71790837	1	12	270.434	-	-	8	1	1	C17orf54|ENST00000444747|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C17orf54|ENST00000444747|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	4	3	19	23	19	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056400	17	73193553	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	73193553	73193562	1	42	589.055	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	10	14	0	0	./.	5	6	6	7	16	40	17	43	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056408	17	73200621	AT	A	389	PASS	NUP85	CCDS32730.1	r.?	-	-	Del	upstream	D	73200621	73200631	1	18	351.756	-	-	9	1	1	NUP85|CCDS32730.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NUP85|CCDS32730.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	8	7	8	0	0	./.	2	5	3	8	22	28	22	28	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056423	17	73218117	C	CGT	300	PASS	NUP85	CCDS32730.1	r.?	-	-	Ins	intronic	I	73218117	73218132	2	12	265.016	-	-	7	1	1	NUP85|CCDS32730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUP85|CCDS32730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	14	0	0	./.	3	2	6	3	25	31	25	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056622	17	73530429	TG	T	420	PASS	LLGL2	CCDS32733.1	r.?	-	-	Del	intronic	D	73530429	73530436	1	18	375.838	-	-	6	1	1	LLGL2|CCDS32733.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LLGL2|CCDS32733.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	5	4	6	42	22	42	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056662	17	73631705	T	TC	420	PASS	RECQL5	CCDS42380.1	r.?	-	-	Ins	intronic	I	73631705	73631713	1	20	369.818	-	-	7	1	1	RECQL5|CCDS42380.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RECQL5|CCDS42380.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	5	4	33	29	33	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056716	17	73782957	CA	C	300	PASS	UNK	CCDS45778.1	r.?	-	-	Del	intronic	D	73782957	73782967	1	12	270.434	-	-	9	1	-	UNK|CCDS45778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNK|CCDS45778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	17	3	17	0	0	./.	2	3	2	4	22	30	22	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760056806	17	73985667	AT	A	329	PASS	C17orf106	CCDS45780.1	r.?	-	-	Del	intronic	D	73985667	73985675	1	16	325.244	-	-	7	1	1	C17orf106|CCDS45780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C17orf106|CCDS45780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	5	4	21	20	21	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057227	17	74942379	AC	A	360	PASS	MGAT5B	CCDS11751.1	r.?	-	-	Del	intronic	D	74942379	74942385	1	15	325.244	-	-	5	1	1	MGAT5B|CCDS11751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGAT5B|CCDS11751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	4	2	4	2	21	14	21	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057363	17	75175765	CT	C	300	PASS	SEC14L1	CCDS42385.1	r.?	-	-	Del	intronic	D	75175765	75175775	1	12	269.23	-	-	9	1	1	SEC14L1|CCDS42385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC14L1|CCDS42385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	4	3	22	28	22	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057516	17	75512042	TA	T	300	PASS	-	-	-	-	-	Del	-	D	75512042	75512052	1	12	271.036	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	3	2	4	5	28	21	28	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057654	17	75927374	GCA	G	360	PASS	-	-	-	-	-	Del	-	D	75927374	75927384	2	15	325.244	-	-	4	1	1	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	2	4	4	7	25	30	25	30	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057677	17	75992400	GA	G	480	PASS	-	-	-	-	-	Del	-	D	75992400	75992409	1	24	432.454	-	-	8	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	5	3	8	3	32	21	32	21	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057706	17	76113106	AC	A	420	PASS	TMC6	CCDS32748.1	r.?	-	-	Del	intronic	D	76113106	76113113	1	14	378.247	-	-	6	1	1	TMC6|CCDS32748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMC6|CCDS32748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	1	6	2	6	29	29	29	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057720	17	76146264	AT	A	300	PASS	C17orf99	ENST00000340363	r.?	-	-	Del	intronic	D	76146264	76146271	1	10	269.832	-	-	6	1	1	C17orf99|ENST00000340363|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C17orf99|ENST00000340363|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	4	1	7	5	22	22	22	22	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057773	17	76214850	AT	A	269	PASS	BIRC5	CCDS32752.1	r.?	-	-	Del	intronic	D	76214850	76214859	1	10	265.016	-	-	8	1	1	BIRC5|CCDS32752.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BIRC5|CCDS32752.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	2	6	28	20	28	20	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057811	17	76292076	CT	C	269	PASS	-	-	-	-	-	Del	-	D	76292076	76292085	1	10	270.434	-	-	8	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	7	2	28	22	28	22	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057978	17	76688233	TC	T	540	PASS	CYTH1	CCDS42392.2	r.?	-	-	Del	intronic	D	76688233	76688239	1	30	486.059	-	-	5	1	1	CYTH1|CCDS42392.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTH1|CCDS42392.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	5	4	7	5	32	39	32	39	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760057981	17	76698913	AT	A	300	PASS	CYTH1	CCDS42392.2	r.?	-	-	Del	intronic	D	76698913	76698923	1	12	271.036	-	-	9	1	1	CYTH1|CCDS42392.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTH1|CCDS42392.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	2	3	3	4	25	25	25	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058180	17	77253663	CT	C	360	PASS	ENSG00000167281	CCDS45805.1	r.?	-	-	Del	intronic	D	77253663	77253673	1	15	324.039	-	-	9	1	1	ENSG00000167281|CCDS45805.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000167281|CCDS45805.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	6	3	33	31	33	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058393	17	77951347	GGAGA	G	600	PASS	TBC1D16	CCDS11766.1	r.?	-	-	Del	intronic	D	77951347	77951357	4	27	540.266	-	-	4	1	1	TBC1D16|CCDS11766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D16|CCDS11766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	2	8	5	10	24	37	24	37	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058514	17	78202222	GC	G	360	PASS	SLC26A11	CCDS11771.2	r.?	-	-	Del	intronic	D	78202222	78202227	1	15	325.244	-	-	4	1	1	SLC26A11|CCDS11771.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC26A11|CCDS11771.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	4	2	5	2	26	8	26	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058553	17	78284062	G	GT	360	PASS	RNF213	CCDS11772.1	r.?	-	-	Ins	intronic	I	78284062	78284070	1	15	321.631	-	-	7	1	1	RNF213|CCDS11772.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF213|CCDS11772.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	18	8	0	0	./.	4	2	5	3	28	29	28	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058760	17	78761037	TA	T	360	PASS	RPTOR	CCDS11773.1	r.?	-	-	Del	intronic	D	78761037	78761045	1	15	325.244	-	-	7	1	1	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	2	4	4	5	19	25	19	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058761	17	78770849	G	GT	300	PASS	RPTOR	CCDS11773.1	r.?	-	-	Ins	intronic	I	78770849	78770857	1	12	268.026	-	-	7	1	1	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	6	24	22	25	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058836	17	78990587	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	78990587	78990596	1	10	268.026	-	-	8	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	1	4	3	6	24	29	24	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760058967	17	79300523	G	GT	480	PASS	TMEM105	CCDS11781.1	r.?	-	-	Ins	intronic	I	79300523	79300531	1	21	428.842	-	-	7	1	1	TMEM105|CCDS11781.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMEM105|CCDS11781.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	6	2	6	3	31	29	31	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059045	17	79496847	A	AT	360	PASS	FSCN2	CCDS45810.1	r.?	-	-	Ins	intronic	I	79496847	79496854	1	16	321.029	-	-	6	1	1	FSCN2|CCDS45810.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSCN2|CCDS45810.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	3	4	4	27	22	27	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059088	17	79591634	AAAC	A	298	PASS	NPLOC4	CCDS45812.1	r.?	-	-	Del	intronic	D	79591634	79591640	3	15	321.631	-	-	1	1	1	NPLOC4|CCDS45812.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPLOC4|CCDS45812.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	3	5	26	35	26	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059146	17	79763317	AG	A	420	PASS	GCGR	ENST00000400723	r.?	-	-	Del	intronic	D	79763317	79763323	1	18	379.451	-	-	5	1	1	GCGR|ENST00000400723|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GCGR|ENST00000400723|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	5	4	6	22	28	22	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059174	17	79878421	AC	A	480	PASS	MAFG	CCDS11793.1	r.2762delG	c.?	p.?	Del	3'UTR variant	D	79878421	79878427	1	21	433.658	-	-	5	1	1	MAFG|CCDS11793.1|r.2762delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MAFG|CCDS11793.1|r.2762delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	7	12	7	0	0	./.	2	6	3	7	32	30	32	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059207	17	79951074	C	CT	420	PASS	ASPSCR1	CCDS11796.1	r.?	-	-	Ins	intronic	I	79951074	79951083	1	20	374.032	-	-	8	1	-	ASPSCR1|CCDS11796.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASPSCR1|CCDS11796.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	4	3	5	3	29	29	29	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059221	17	80012212	TTC	T	360	PASS	GPS1	CCDS11800.1	r.?	-	-	Del	intronic	D	80012212	80012220	2	16	322.835	-	-	3	1	1	GPS1|CCDS11800.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPS1|ENST00000392357|r.1267_1268delUC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	7	3	7	3	0	0	./.	3	3	5	4	21	21	21	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059225	17	80028547	GA	G	420	PASS	DUS1L	CCDS32775.1	r.?	-	-	Del	upstream	D	80028547	80028556	1	14	379.451	-	-	8	1	1	DUS1L|CCDS32775.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000236696|ENST00000426190|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	1	6	1	7	16	24	16	24	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059308	17	80196008	CG	C	480	PASS	SLC16A3	CCDS11804.1	r.?	-	-	Del	intronic	D	80196008	80196018	1	25	428.842	-	-	9	1	1	SLC16A3|CCDS11804.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC16A3|CCDS11804.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	6	5	6	0	0	./.	4	4	5	4	23	23	23	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059386	17	80444216	CG	C	480	PASS	NARF	CCDS42404.1	r.?	-	-	Del	intronic	D	80444216	80444225	1	25	432.454	-	-	8	1	1	NARF|CCDS42404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NARF|CCDS42404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	4	5	4	25	18	25	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059397	17	80472991	GA	G	300	PASS	FOXK2	CCDS11813.1	r.?	-	-	Del	upstream	D	80472991	80472995	1	10	271.036	-	-	3	1	1	FOXK2|CCDS11813.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FOXK2|CCDS11813.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	15	5	15	0	0	./.	4	1	5	2	19	11	19	11	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760059478	17	80627529	TA	T	380	PASS	RAB40B	CCDS11816.1	r.?	-	-	Del	intronic	D	80627529	80627539	1	20	379.451	-	-	9	1	1	RAB40B|CCDS11816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB40B|CCDS11816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	3	4	5	6	21	15	21	15	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060017	18	263089	CT	C	300	PASS	THOC1	CCDS45820.1	r.?	-	-	Del	intronic	D	263089	263099	1	6	271.511	-	-	9	1	1	THOC1|CCDS45820.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THOC1|CCDS45820.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	5	0	7	2	22	22	22	22	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060084	18	394938	CA	C	540	PASS	COLEC12	CCDS32782.1	r.?	-	-	Del	intronic	D	394938	394947	1	28	488.72	-	-	8	1	-	COLEC12|CCDS32782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COLEC12|CCDS32782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	6	3	8	6	38	28	38	28	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060245	18	760468	TA	T	480	PASS	YES1	CCDS11824.1	r.?	-	-	Del	intronic	D	760468	760477	1	21	434.418	-	-	8	1	1	YES1|CCDS11824.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	YES1|CCDS11824.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	6	2	8	20	22	20	22	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060451	18	1378664	CA	C	300	PASS	-	-	-	-	-	Del	-	D	1378664	1378670	1	12	269.103	-	-	5	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	2	4	2	33	7	33	7	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060466	18	1422012	TA	T	540	PASS	-	-	-	-	-	Del	-	D	1422012	1422019	1	24	488.72	-	-	6	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	7	2	8	4	19	29	19	29	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060579	18	1706764	AT	A	360	PASS	-	-	-	-	-	Del	-	D	1706764	1706772	1	15	324.007	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	4	4	21	26	21	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060879	18	2511264	CA	C	360	PASS	-	-	-	-	-	Del	-	D	2511264	2511273	1	15	325.813	-	-	8	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	2	4	5	5	25	18	25	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760060898	18	2547714	CT	C	420	PASS	METTL4	CCDS11826.1	r.?	-	-	Del	intronic	D	2547714	2547723	1	20	379.514	-	-	8	1	1	METTL4|CCDS11826.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	METTL4|CCDS11826.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	4	3	4	6	17	27	17	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061084	18	2997295	G	GT	447	PASS	LPIN2	CCDS11829.1	r.?	-	-	Ins	intronic	I	2997295	2997305	1	30	482.7	-	-	9	1	1	LPIN2|CCDS11829.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPIN2|CCDS11829.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	6	8	0	0	./.	4	5	6	6	34	33	34	33	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061375	18	3604326	CCTT	C	329	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Del	intronic	D	3604326	3604333	3	16	325.813	-	-	2	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000238060|ENST00000445581|r.1330_1332delCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	9	6	9	0	0	./.	3	3	3	5	24	25	24	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061448	18	3784467	TA	T	360	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Del	intronic	D	3784467	3784469	1	12	322.803	-	-	1	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	5	1	5	2	22	21	22	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061519	18	4005856	AT	A	540	PASS	-	-	-	-	-	Del	-	D	4005856	4005866	1	28	488.72	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	3	6	3	22	15	22	15	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061571	18	4211992	CTG	C	420	PASS	-	-	-	-	-	Del	-	D	4211992	4211998	2	8	380.116	-	-	2	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	7	0	8	3	28	26	28	26	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061807	18	5090817	C	CT	474	PASS	-	-	-	-	-	Ins	-	I	5090817	5090821	1	25	428.397	-	-	3	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	4	4	5	7	24	29	24	29	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760061819	18	5128965	CA	C	600	PASS	-	-	-	-	-	Del	-	D	5128965	5128971	1	32	543.022	-	-	5	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	7	3	10	3	26	13	26	13	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062056	18	5929824	CT	C	269	PASS	-	-	-	-	-	Del	-	D	5929824	5929832	1	10	271.511	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	1	4	1	7	17	39	17	39	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062117	18	6264787	GA	G	360	PASS	L3MBTL4	CCDS11839.2	r.?	-	-	Del	intronic	D	6264787	6264797	1	15	325.211	-	-	9	1	1	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	4	2	4	2	19	23	19	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062316	18	6811658	AT	A	300	PASS	ARHGAP28	ENST00000262227	r.?	-	-	Del	intronic	D	6811658	6811668	1	12	271.511	-	-	9	1	1	ARHGAP28|ENST00000262227|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ARHGAP28|ENST00000262227|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	2	3	4	3	12	18	12	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062406	18	7053557	GA	G	300	PASS	LAMA1	CCDS32787.1	r.?	-	-	Del	intronic	D	7053557	7053567	1	12	271.511	-	-	9	1	1	LAMA1|CCDS32787.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMA1|CCDS32787.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	2	3	3	4	26	24	26	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062467	18	7179856	TA	T	300	PASS	-	-	-	-	-	Del	-	D	7179856	7179866	1	12	270.909	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	4	18	25	18	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062635	18	7596609	G	GA	420	PASS	PTPRM	CCDS11840.1	r.?	-	-	Ins	intronic	I	7596609	7596616	1	20	375.299	-	-	6	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	3	4	4	18	21	18	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062645	18	7615249	GA	G	300	PASS	PTPRM	CCDS11840.1	r.?	-	-	Del	intronic	D	7615249	7615258	1	12	271.511	-	-	8	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	2	5	23	16	23	16	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062683	18	7791237	CT	C	300	PASS	PTPRM	CCDS11840.1	r.?	-	-	Del	intronic	D	7791237	7791247	1	12	271.511	-	-	9	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	4	19	14	19	14	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062739	18	8008016	AT	A	420	PASS	PTPRM	CCDS11840.1	r.?	-	-	Del	intronic	D	8008016	8008023	1	20	379.514	-	-	6	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	4	3	4	18	26	18	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062789	18	8180945	T	TG	300	PASS	PTPRM	CCDS11840.1	r.?	-	-	Ins	intronic	I	8180945	8180953	1	12	268.501	-	-	7	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	2	3	3	6	29	30	29	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062825	18	8295762	CA	C	269	PASS	PTPRM	CCDS11840.1	r.?	-	-	Del	intronic	D	8295762	8295772	1	12	270.307	-	-	9	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	2	3	3	4	18	28	18	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760062969	18	8739622	TCATA	T	509	PASS	KIAA0802	CCDS11841.1	r.?	-	-	Del	intronic	D	8739622	8739629	4	24	488.72	-	-	1	1	1	KIAA0802|CCDS11841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0802|CCDS11841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	7	2	7	24	25	24	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063028	18	8898289	CA	C	420	PASS	-	-	-	-	-	Del	-	D	8898289	8898298	1	18	378.912	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	5	3	5	33	27	33	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063046	18	8962675	CT	C	420	PASS	-	-	-	-	-	Del	-	D	8962675	8962683	1	20	380.116	-	-	7	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	4	5	6	23	31	23	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063147	18	9271359	TA	T	300	PASS	ANKRD12	CCDS42411.1	r.?	-	-	Del	intronic	D	9271359	9271365	1	6	261.276	-	-	5	1	1	ANKRD12|CCDS42411.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD12|CCDS42411.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	0	5	0	7	9	31	9	31	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063169	18	9322260	CA	C	480	PASS	-	-	-	-	-	Del	-	D	9322260	9322269	1	24	432.612	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	5	3	6	26	24	26	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063234	18	9495627	GA	G	300	PASS	RALBP1	CCDS11845.1	r.?	-	-	Del	intronic	D	9495627	9495633	1	12	270.909	-	-	5	1	1	RALBP1|CCDS11845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RALBP1|CCDS11845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	2	4	3	32	32	32	32	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063235	18	9496855	CT	C	360	PASS	RALBP1	CCDS11845.1	r.?	-	-	Del	intronic	D	9496855	9496864	1	15	325.813	-	-	8	1	1	RALBP1|CCDS11845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RALBP1|CCDS11845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	4	2	6	6	30	29	30	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063244	18	9525920	C	CT	360	PASS	RALBP1	CCDS11845.1	r.?	-	-	Ins	intronic	I	9525920	9525930	1	15	322.201	-	-	9	1	1	RALBP1|CCDS11845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALBP1|CCDS11845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	2	7	3	25	19	26	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063331	18	9726917	T	TA	360	PASS	RAB31	CCDS45826.1	r.?	-	-	Ins	intronic	I	9726917	9726927	1	16	322.201	-	-	9	1	1	RAB31|CCDS45826.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB31|CCDS45826.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	16	0	0	./.	3	3	6	6	25	30	26	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063398	18	9914391	C	CG	300	PASS	VAPA	CCDS11848.2	r.?	-	-	Ins	intronic	I	9914391	9914399	1	10	266.695	-	-	7	1	1	VAPA|CCDS11848.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VAPA|CCDS11848.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	4	4	20	35	21	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063438	18	10106594	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	10106594	10106603	1	12	268.501	-	-	8	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	2	3	3	6	14	27	14	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063558	18	10587109	AT	A	300	PASS	-	-	-	-	-	Del	-	D	10587109	10587119	1	10	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	1	5	1	33	12	33	12	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063756	18	11156881	GA	G	420	PASS	-	-	-	-	-	Del	-	D	11156881	11156890	1	20	380.116	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	4	3	5	19	29	19	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063831	18	11476475	CT	C	337	PASS	-	-	-	-	-	Del	-	D	11476475	11476480	1	16	325.813	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	4	3	23	29	23	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063905	18	11646626	C	CA	305	PASS	AMAC1L1	ENST00000424015	r.?	-	-	Ins	downstream	I	11646626	11646632	1	16	322.201	-	-	5	1	1	AMAC1L1|ENST00000424015|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	AMAC1L1|ENST00000424015|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	24	13	24	0	0	./.	3	3	4	4	38	35	38	36	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760063912	18	11668904	GA	G	660	PASS	-	-	-	-	-	Del	-	D	11668904	11668914	1	36	597.325	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	8	3	10	3	24	28	24	28	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064353	18	12687331	GA	G	300	PASS	CEP76	CCDS11861.1	r.?	-	-	Del	intronic	D	12687331	12687341	1	10	271.511	-	-	9	1	1	CEP76|CCDS11861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP76|CCDS11861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	1	4	1	6	14	26	14	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064446	18	12877229	GA	G	300	PASS	PTPN2	CCDS11865.1	r.?	-	-	Del	intronic	D	12877229	12877239	1	12	271.511	-	-	9	1	1	PTPN2|CCDS11865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN2|CCDS11865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	4	4	20	34	20	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064477	18	12954776	G	GA	348	PASS	SEH1L	CCDS45832.1	r.?	-	-	Ins	intronic	I	12954776	12954785	1	20	375.901	-	-	8	1	1	SEH1L|CCDS45832.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEH1L|CCDS45832.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	23	12	23	0	0	./.	4	3	5	5	25	21	26	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064515	18	13176467	AT	A	480	PASS	-	-	-	-	-	Del	-	D	13176467	13176474	1	24	434.418	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	7	8	26	31	26	31	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064563	18	13340875	G	GT	360	PASS	C18orf1	CCDS32793.1	r.?	-	-	Ins	intronic	I	13340875	13340881	1	15	319.793	-	-	5	1	1	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	2	5	2	30	31	31	31	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064599	18	13493324	A	AT	360	PASS	C18orf1	CCDS32793.1	r.?	-	-	Ins	intronic	I	13493324	13493332	1	15	322.201	-	-	7	1	1	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	2	5	22	32	22	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064609	18	13524443	GA	G	360	PASS	C18orf1	CCDS32793.1	r.?	-	-	Del	intronic	D	13524443	13524452	1	15	325.813	-	-	8	1	1	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	4	4	4	32	31	32	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760064681	18	13699391	G	GC	420	PASS	C18orf19	CCDS11866.1	r.?	-	-	Ins	intronic	I	13699391	13699399	1	14	375.901	-	-	7	1	1	C18orf19|CCDS11866.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C18orf19|CCDS11866.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	6	1	6	3	17	26	18	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065097	18	14797207	AC	A	300	PASS	ENSG00000180777	ENST00000320584	r.?	-	-	Del	intronic	D	14797207	14797215	1	12	271.511	-	-	7	1	1	ENSG00000180777|ENST00000320584|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000180777|ENST00000320584|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	2	18	23	18	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065128	18	14911184	AT	A	480	PASS	-	-	-	-	-	Del	-	D	14911184	14911194	1	25	434.418	-	-	9	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	4	4	5	5	22	22	22	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065136	18	14945411	AAGG	A	329	PASS	-	-	-	-	-	Del	-	D	14945411	14945420	3	15	325.813	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	4	2	29	16	29	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065138	18	14956106	GT	G	269	PASS	-	-	-	-	-	Del	-	D	14956106	14956114	1	6	271.511	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	0	6	1	22	12	22	12	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065699	18	19196813	AT	A	295	PASS	SNRPD1	CCDS32801.1	r.?	-	-	Del	intronic	D	19196813	19196822	1	10	271.511	-	-	8	1	1	SNRPD1|CCDS32801.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNRPD1|CCDS32801.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	1	4	5	4	33	28	33	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065739	18	19306352	GA	G	420	PASS	-	-	-	-	-	Del	-	D	19306352	19306362	1	20	380.116	-	-	9	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	4	3	5	3	27	27	27	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065744	18	19330101	AT	A	300	PASS	MIB1	CCDS11871.1	r.?	-	-	Del	intronic	D	19330101	19330109	1	12	271.511	-	-	7	1	1	MIB1|CCDS11871.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIB1|CCDS11871.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	5	5	18	18	18	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065886	18	19717759	AT	A	420	PASS	-	-	-	-	-	Del	-	D	19717759	19717768	1	20	379.514	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	3	4	16	12	16	12	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760065992	18	20087140	CGA	C	269	PASS	-	-	-	-	-	Del	-	D	20087140	20087152	2	6	270.909	-	-	5	1	1	-	-	./.	0	0	0	0	6	4	6	4	0	0	./.	0	5	2	7	15	19	15	19	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760066713	18	22169552	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	22169552	22169557	1	12	268.501	-	-	4	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	2	4	18	25	18	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760066892	18	22929136	GTTC	G	627	PASS	ZNF521	CCDS32806.1	r.?	-	-	Del	intronic	D	22929136	22929145	3	49	651.627	-	-	2	1	1	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	6	6	8	7	31	22	31	22	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760066894	18	22931247	AC	A	360	PASS	ZNF521	CCDS32806.1	r.?	-	-	Del	intronic	D	22931247	22931252	1	16	323.405	-	-	4	1	1	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	3	4	25	23	25	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760066934	18	23061634	CA	C	420	PASS	-	-	-	-	-	Del	-	D	23061634	23061644	1	18	379.514	-	-	9	1	-	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	5	2	6	2	28	19	28	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067026	18	23505858	GT	G	300	PASS	-	-	-	-	-	Del	-	D	23505858	23505865	1	10	269.705	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	2	5	18	24	18	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067196	18	24102118	CA	C	420	PASS	KCTD1	CCDS45844.1	r.?	-	-	Del	intronic	D	24102118	24102123	1	20	379.514	-	-	4	1	1	KCTD1|CCDS45844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCTD1|CCDS45844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	3	6	31	34	31	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067222	18	24157689	GT	G	300	PASS	KCTD1	CCDS11888.1	r.?	-	-	Del	intronic	D	24157689	24157699	1	10	271.511	-	-	9	1	1	KCTD1|CCDS11888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KCTD1|CCDS11888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	1	7	3	28	17	28	17	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067265	18	24268796	AT	A	360	PASS	-	-	-	-	-	Del	-	D	24268796	24268806	1	15	321.599	-	-	9	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	4	2	5	4	28	15	28	15	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067322	18	24466195	GC	G	540	PASS	-	-	-	-	-	Del	-	D	24466195	24466204	1	28	485.108	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	6	3	7	4	33	16	33	16	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067443	18	25027778	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	25027778	25027781	2	12	325.813	-	-	2	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	1	5	4	31	23	31	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067605	18	25687751	TA	T	360	PASS	CDH2	CCDS11891.1	r.?	-	-	Del	intronic	D	25687751	25687761	1	16	325.813	-	-	9	1	1	CDH2|CCDS11891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH2|CCDS11891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	3	3	3	4	26	21	26	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067657	18	25921639	CA	C	540	PASS	-	-	-	-	-	Del	-	D	25921639	25921648	1	30	488.72	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	4	6	6	19	31	19	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067697	18	26059241	CA	C	360	PASS	-	-	-	-	-	Del	-	D	26059241	26059251	1	16	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	3	3	5	20	41	20	41	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067700	18	26071609	TA	T	300	PASS	-	-	-	-	-	Del	-	D	26071609	26071617	1	10	271.511	-	-	7	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	1	5	3	22	18	22	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067770	18	26326892	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	26326892	26326902	1	15	321.599	-	-	9	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	4	2	4	3	10	25	12	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067928	18	27037678	CT	C	480	PASS	-	-	-	-	-	Del	-	D	27037678	27037683	1	21	434.418	-	-	4	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	6	4	9	27	34	27	34	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760067954	18	27112825	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	27112825	27112833	1	12	268.501	-	-	7	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	3	2	3	23	18	23	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068646	18	29636058	TG	T	360	PASS	RNF125	CCDS11902.1	r.?	-	-	Del	intronic	D	29636058	29636060	1	12	324.007	-	-	1	1	1	RNF125|CCDS11902.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF125|CCDS11902.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	1	7	1	27	4	27	4	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068680	18	29697468	GA	G	420	PASS	RNF138	CCDS11903.1	r.?	-	-	Del	intronic	D	29697468	29697478	1	20	380.116	-	-	9	1	1	RNF138|CCDS11903.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF138|CCDS11903.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	5	5	23	21	23	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068735	18	29855649	CT	C	600	PASS	FAM59A	CCDS11905.1	r.?	-	-	Del	intronic	D	29855649	29855659	1	27	542.42	-	-	9	1	1	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	8	2	8	13	33	13	33	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068748	18	29885014	T	TA	420	PASS	FAM59A	CCDS11905.1	r.?	-	-	Ins	intronic	I	29885014	29885024	1	20	375.901	-	-	9	1	1	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	4	3	4	5	35	30	36	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068755	18	29923176	CA	C	420	PASS	FAM59A	CCDS11905.1	r.?	-	-	Del	intronic	D	29923176	29923183	1	18	380.116	-	-	6	1	1	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	5	2	6	22	31	22	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068756	18	29936120	AT	A	420	PASS	FAM59A	CCDS11905.1	r.?	-	-	Del	intronic	D	29936120	29936128	1	18	380.116	-	-	7	1	1	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	2	5	3	5	22	34	22	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068832	18	30231259	CT	C	300	PASS	-	-	-	-	-	Del	-	D	30231259	30231267	1	12	271.511	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	3	27	21	27	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760068894	18	30414202	TA	T	360	PASS	-	-	-	-	-	Del	-	D	30414202	30414211	1	16	319.191	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	3	3	3	4	24	28	24	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069000	18	30999607	CA	C	360	PASS	C18orf34	CCDS42424.1	r.?	-	-	Del	intronic	D	30999607	30999616	1	7	325.813	-	-	8	1	1	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	0	6	2	6	29	30	29	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069055	18	31163627	AT	A	300	PASS	ASXL3	CCDS45847.1	r.?	-	-	Del	intronic	D	31163627	31163635	1	10	271.511	-	-	7	1	1	ASXL3|CCDS45847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL3|CCDS45847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	6	1	20	28	20	28	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069101	18	31319985	GA	G	300	PASS	ASXL3	CCDS45847.1	r.2673delA	c.2618delA	p.V876fs*59	Del	frameshift	D	31319985	31319994	1	12	271.511	-	-	8	1	1	ASXL3|CCDS45847.1|r.2673delA|c.2618delA|p.V876fs*59|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ASXL3|CCDS45847.1|r.2673delA|c.2618delA|p.V876fs*59|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	7	3	29	15	29	15	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069172	18	31568758	CA	C	300	PASS	NOL4	CCDS11907.2	r.?	-	-	Del	intronic	D	31568758	31568766	1	10	270.909	-	-	7	1	1	NOL4|CCDS11907.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOL4|CCDS11907.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	3	5	30	29	30	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069226	18	31850482	CT	C	300	PASS	-	-	-	-	-	Del	-	D	31850482	31850491	1	6	271.511	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	0	5	0	39	4	39	4	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069256	18	32003928	A	AT	336	PASS	-	-	-	-	-	Ins	-	I	32003928	32003938	1	15	320.395	-	-	9	1	1	-	-	./.	0	0	0	0	22	11	23	11	0	0	./.	4	2	4	2	21	14	22	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069263	18	32035038	AT	A	251	PASS	-	-	-	-	-	Del	-	D	32035038	32035045	1	10	269.705	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	5	1	21	27	21	27	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069353	18	32464577	ACT	A	300	PASS	DTNA	CCDS45848.1	r.?	-	-	Del	intronic	D	32464577	32464592	2	12	271.511	-	-	7	1	1	DTNA|CCDS45848.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DTNA|CCDS45848.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	2	5	3	33	9	33	9	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069522	18	32941843	GT	G	389	PASS	ZNF396	CCDS11913.1	r.?	-	-	Del	downstream	D	32941843	32941853	1	18	380.116	-	-	9	1	1	ZNF396|CCDS11913.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF396|CCDS11913.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	7	5	26	32	26	32	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069532	18	32970936	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	32970936	32970945	1	15	322.201	-	-	8	1	1	-	-	./.	0	0	0	0	11	18	12	18	0	0	./.	4	2	5	3	28	11	28	12	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069534	18	32975250	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	32975250	32975258	1	24	429.601	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	5	3	7	19	37	19	38	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069544	18	33015494	GT	G	300	PASS	-	-	-	-	-	Del	-	D	33015494	33015500	1	12	271.511	-	-	5	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	3	5	31	19	31	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069622	18	33232838	A	AT	420	PASS	GALNT1	CCDS11915.1	r.?	-	-	Ins	upstream	I	33232838	33232846	1	14	375.901	-	-	7	1	1	GALNT1|CCDS11915.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	GALNT1|ENST00000392829|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	12	9	0	0	./.	1	6	1	7	11	21	12	21	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069660	18	33331062	AC	A	480	PASS	-	-	-	-	-	Del	-	D	33331062	33331070	1	25	434.418	-	-	7	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	4	4	6	6	29	27	29	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069730	18	33653422	TA	T	540	PASS	-	-	-	-	-	Del	-	D	33653422	33653432	1	28	488.72	-	-	9	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	3	6	3	6	30	33	30	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069814	18	33825262	AT	A	420	PASS	MOCOS	CCDS11919.1	r.?	-	-	Del	intronic	D	33825262	33825271	1	20	380.116	-	-	8	1	1	MOCOS|CCDS11919.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MOCOS|CCDS11919.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	3	7	4	33	21	33	21	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760069833	18	33871943	AT	A	300	PASS	-	-	-	-	-	Del	-	D	33871943	33871953	1	12	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	3	4	23	23	23	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070045	18	34738005	CT	C	300	PASS	KIAA1328	CCDS45855.1	r.?	-	-	Del	intronic	D	34738005	34738015	1	12	269.103	-	-	9	1	-	KIAA1328|CCDS45855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1328|CCDS45855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	2	4	3	22	13	22	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070071	18	34887585	AG	A	540	PASS	CELF4	CCDS32818.1	r.?	-	-	Del	intronic	D	34887585	34887591	1	30	488.72	-	-	5	1	1	CELF4|CCDS32818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELF4|CCDS32818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	4	6	5	26	18	26	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070075	18	34901048	TG	T	300	PASS	CELF4	CCDS32818.1	r.?	-	-	Del	intronic	D	34901048	34901057	1	12	271.511	-	-	8	1	1	CELF4|CCDS32818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELF4|CCDS32818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	9	4	26	23	26	23	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070194	18	35380618	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	35380618	35380627	1	28	483.302	-	-	8	1	1	-	-	./.	0	0	0	0	21	15	21	16	0	0	./.	6	3	6	4	27	32	27	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070348	18	36015483	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	36015483	36015493	1	16	322.201	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	3	4	3	26	37	26	38	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070510	18	36605687	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	36605687	36605694	1	15	322.201	-	-	6	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	4	2	4	4	35	23	36	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070516	18	36622163	CAA	C	360	PASS	-	-	-	-	-	Del	-	D	36622163	36622168	2	15	320.395	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	4	5	4	29	17	29	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070553	18	36753241	GA	G	360	PASS	-	-	-	-	-	Del	-	D	36753241	36753251	1	16	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	4	5	18	33	18	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070599	18	37021900	GT	G	300	PASS	AC105201.1	ENST00000510201	r.?	-	-	Del	intronic	D	37021900	37021910	1	12	271.511	-	-	9	1	1	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	3	14	29	14	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070744	18	37535342	GA	G	300	PASS	-	-	-	-	-	Del	-	D	37535342	37535350	1	12	271.511	-	-	7	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	2	3	3	4	5	26	5	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070755	18	37582451	TA	T	300	PASS	-	-	-	-	-	Del	-	D	37582451	37582460	1	12	271.511	-	-	8	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	4	4	20	23	20	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760070855	18	37966373	AG	A	300	PASS	-	-	-	-	-	Del	-	D	37966373	37966376	1	12	270.307	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	6	3	34	18	34	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071084	18	38914321	TA	T	600	PASS	-	-	-	-	-	Del	-	D	38914321	38914331	1	35	541.216	-	-	9	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	6	4	9	4	25	20	25	20	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071194	18	39354741	TA	T	291	PASS	-	-	-	-	-	Del	-	D	39354741	39354751	1	16	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	4	6	26	24	26	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071278	18	39663690	A	AT	420	PASS	PIK3C3	CCDS11920.1	r.5339_5340insu	c.?	p.?	Ins	3'UTR variant	I	39663690	39663697	1	20	375.901	-	-	6	1	1	PIK3C3|CCDS11920.1|r.5339_5340insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	PIK3C3|CCDS11920.1|r.5339_5340insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	17	7	17	7	0	0	./.	3	4	6	6	29	27	31	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071298	18	39727081	GA	G	300	PASS	-	-	-	-	-	Del	-	D	39727081	39727091	1	6	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	0	5	0	6	10	27	10	27	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071435	18	40152474	GT	G	420	PASS	-	-	-	-	-	Del	-	D	40152474	40152481	1	20	380.116	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	4	5	24	21	24	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071504	18	40435871	AT	A	360	PASS	RIT2	CCDS11921.1	r.?	-	-	Del	intronic	D	40435871	40435880	1	12	325.813	-	-	8	1	1	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	1	7	1	38	17	38	17	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071590	18	40818786	AT	A	418	PASS	-	-	-	-	-	Del	-	D	40818786	40818793	1	9	434.418	-	-	6	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	0	8	0	9	13	35	13	35	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071765	18	41572394	CA	C	300	PASS	-	-	-	-	-	Del	-	D	41572394	41572403	1	10	271.511	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	2	5	11	25	11	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071813	18	41774609	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	41774609	41774618	1	20	375.299	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	5	4	21	21	21	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071952	18	42301766	TG	T	600	PASS	SETBP1	CCDS11923.2	r.?	-	-	Del	intronic	D	42301766	42301772	1	35	543.022	-	-	5	1	1	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	6	4	8	6	33	24	33	24	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071973	18	42387435	TTTTG	T	360	PASS	SETBP1	CCDS11923.2	r.?	-	-	Del	intronic	D	42387435	42387459	4	16	325.813	-	-	5	1	-	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	3	3	4	20	25	20	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760071999	18	42492447	G	GT	300	PASS	SETBP1	CCDS11923.2	r.?	-	-	Ins	intronic	I	42492447	42492456	1	12	268.501	-	-	8	1	-	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	2	3	4	4	23	33	24	33	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072148	18	43064694	GTC	G	269	PASS	-	-	-	-	-	Del	-	D	43064694	43064712	2	12	269.705	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	4	31	22	31	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072186	18	43212973	AT	A	420	PASS	SLC14A2	CCDS11924.1	r.?	-	-	Del	intronic	D	43212973	43212982	1	18	380.116	-	-	8	1	1	SLC14A2|CCDS11924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC14A2|CCDS11924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	5	2	6	5	33	35	33	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072326	18	43695593	CA	C	300	PASS	HAUS1	CCDS11928.1	r.?	-	-	Del	intronic	D	43695593	43695603	1	12	268.501	-	-	9	1	1	HAUS1|CCDS11928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HAUS1|CCDS11928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	5	3	14	31	14	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072331	18	43705225	CA	C	360	PASS	HAUS1	CCDS11928.1	r.?	-	-	Del	intronic	D	43705225	43705235	1	16	324.007	-	-	9	1	1	HAUS1|CCDS11928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HAUS1|CCDS11928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	4	3	21	19	21	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072373	18	43783574	G	GT	300	PASS	C18orf25	CCDS42430.1	r.?	-	-	Ins	intronic	I	43783574	43783584	1	12	263.082	-	-	9	1	1	C18orf25|CCDS42430.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C18orf25|CCDS42430.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	9	10	0	0	./.	3	2	4	5	28	29	28	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072485	18	44223641	CA	C	300	PASS	LOXHD1	ENST00000441551	r.?	-	-	Del	intronic	D	44223641	44223651	1	10	271.511	-	-	9	1	1	LOXHD1|ENST00000441551|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LOXHD1|ENST00000441551|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	1	4	4	7	17	26	17	26	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072667	18	44673870	CA	C	300	PASS	HDHD2	CCDS32829.1	r.?	-	-	Del	intronic	D	44673870	44673878	1	12	271.511	-	-	7	1	1	HDHD2|CCDS32829.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HDHD2|CCDS32829.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	3	4	18	15	18	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072675	18	44683697	GA	G	329	PASS	IER3IP1	CCDS11933.1	r.?	-	-	Del	intronic	D	44683697	44683706	1	12	314.976	-	-	8	1	1	IER3IP1|CCDS11933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IER3IP1|CCDS11933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	1	5	2	7	26	30	26	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072781	18	45035578	GT	G	420	PASS	-	-	-	-	-	Del	-	D	45035578	45035587	1	18	380.116	-	-	8	1	-	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	5	4	6	26	26	26	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072871	18	45343845	AT	A	360	PASS	-	-	-	-	-	Del	-	D	45343845	45343855	1	15	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	2	4	3	5	28	22	28	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760072873	18	45353720	TA	T	410	PASS	SMAD2	CCDS11934.1	r.?	-	-	Del	downstream	D	45353720	45353730	1	20	380.116	-	-	9	1	1	SMAD2|CCDS11934.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SMAD2|CCDS11934.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	17	12	17	0	0	./.	3	4	3	4	25	27	25	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073094	18	46085727	AC	A	540	PASS	KIAA0427	CCDS45864.1	r.?	-	-	Del	intronic	D	46085727	46085736	1	30	487.516	-	-	8	1	1	KIAA0427|CCDS45864.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA0427|CCDS45864.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	4	7	6	35	26	35	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073137	18	46226849	TC	T	480	PASS	KIAA0427	CCDS45864.1	r.?	-	-	Del	intronic	D	46226849	46226856	1	25	433.816	-	-	6	1	1	KIAA0427|CCDS45864.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0427|CCDS45864.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	4	4	5	26	27	26	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073158	18	46307398	AC	A	300	PASS	KIAA0427	CCDS45864.1	r.?	-	-	Del	intronic	D	46307398	46307406	1	10	271.511	-	-	7	1	1	KIAA0427|CCDS45864.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0427|CCDS45864.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	1	5	2	26	22	26	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073277	18	46577325	CA	C	480	PASS	DYM	CCDS11937.1	r.?	-	-	Del	intronic	D	46577325	46577331	1	25	433.816	-	-	5	1	1	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	4	4	4	6	24	26	24	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073659	18	47573093	C	CA	378	PASS	MYO5B	CCDS42436.1	r.?	-	-	Ins	intronic	I	47573093	47573101	1	25	428.397	-	-	7	1	1	MYO5B|CCDS42436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO5B|CCDS42436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	4	6	5	29	28	29	28	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073707	18	47721785	GA	G	389	PASS	MYO5B	CCDS42436.1	r.?	-	-	Del	upstream	D	47721785	47721792	1	18	375.901	-	-	6	1	1	MYO5B|CCDS42436.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MYO5B|CCDS42436.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	13	8	13	0	0	./.	2	5	2	11	26	37	26	37	2	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073828	18	48166845	CT	C	540	PASS	MAPK4	CCDS42437.1	r.?	-	-	Del	intronic	D	48166845	48166854	1	30	488.118	-	-	8	1	-	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	4	5	4	27	11	27	11	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760073842	18	48262549	TG	T	540	PASS	MAPK4	CCDS42437.1	r.?	-	-	Del	downstream	D	48262549	48262554	1	24	488.72	-	-	4	1	1	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	18	8	18	0	0	./.	2	7	2	7	27	26	27	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760074641	18	50845815	GA	G	535	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50845815	50845824	1	24	488.72	-	-	8	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	7	2	8	7	21	30	21	30	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760074649	18	50867715	CA	C	269	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50867715	50867724	1	10	271.511	-	-	8	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	4	1	6	2	32	15	32	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760074850	18	51422312	CA	C	300	PASS	-	-	-	-	-	Del	-	D	51422312	51422322	1	12	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	3	2	5	6	15	16	15	16	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075007	18	51857109	CT	C	300	PASS	STARD6	CCDS11955.1	r.?	-	-	Del	intronic	D	51857109	51857117	1	6	271.511	-	-	7	1	1	STARD6|CCDS11955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STARD6|CCDS11955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	0	6	0	30	16	30	16	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075068	18	52034384	T	TA	290	PASS	-	-	-	-	-	Ins	-	I	52034384	52034392	1	16	321.599	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	3	3	5	20	25	21	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075242	18	52778694	GC	G	420	PASS	-	-	-	-	-	Del	-	D	52778694	52778701	1	14	380.116	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	6	1	6	1	28	16	28	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075283	18	52895519	AG	A	420	PASS	TCF4	CCDS42438.1	r.2564delC	c.1952delC	p.P651fs*32	Del	frameshift	D	52895519	52895525	1	18	380.116	-	-	5	1	1	TCF4|CCDS42438.1|r.2564delC|c.1952delC|p.P651fs*32|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TCF4|CCDS42438.1|r.2564delC|c.1952delC|p.P651fs*32|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	4	11	4	0	0	./.	5	2	6	2	20	14	20	14	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075296	18	52935376	GT	G	360	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	52935376	52935385	1	15	325.813	-	-	8	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	4	2	5	31	22	31	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075301	18	52954307	GA	G	480	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	52954307	52954317	1	21	432.612	-	-	9	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	2	6	2	6	22	16	22	16	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075314	18	52981171	TC	T	360	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	52981171	52981179	1	12	325.813	-	-	7	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	5	1	6	2	23	6	23	6	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075354	18	53152558	TC	T	600	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	53152558	53152564	1	35	543.022	-	-	5	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	4	7	4	27	22	27	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075397	18	53342154	GT	G	360	PASS	-	-	-	-	-	Del	-	D	53342154	53342162	1	15	325.813	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	2	6	4	26	27	26	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075473	18	53635085	AT	A	329	PASS	-	-	-	-	-	Del	-	D	53635085	53635095	1	15	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	2	5	2	22	20	22	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075475	18	53644466	ATC	A	480	PASS	-	-	-	-	-	Del	-	D	53644466	53644477	2	25	434.418	-	-	5	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	4	4	4	21	28	21	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075553	18	53931864	CA	C	780	PASS	-	-	-	-	-	Del	-	D	53931864	53931871	1	56	705.929	-	-	6	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	6	7	6	8	33	33	33	33	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075557	18	53941429	AT	A	360	PASS	-	-	-	-	-	Del	-	D	53941429	53941438	1	15	325.813	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	2	5	2	22	21	22	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075600	18	54124066	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	54124066	54124074	1	20	375.901	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	10	0	0	./.	4	3	6	3	28	14	28	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075699	18	54387514	CA	C	360	PASS	WDR7	CCDS11962.1	r.?	-	-	Del	intronic	D	54387514	54387524	1	16	325.211	-	-	9	1	1	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	5	4	11	18	11	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075804	18	54848430	AT	A	420	PASS	-	-	-	-	-	Del	-	D	54848430	54848437	1	8	380.116	-	-	6	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	7	0	7	0	38	16	38	16	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760075888	18	55118384	CT	C	360	PASS	ONECUT2	CCDS42440.1	r.?	-	-	Del	intronic	D	55118384	55118391	1	7	317.987	-	-	6	1	1	ONECUT2|CCDS42440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ONECUT2|CCDS42440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	6	0	7	0	40	1	40	1	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760076046	18	55478428	AT	A	569	PASS	AC022724.2	ENST00000507923	r.?	-	-	Del	downstream	D	55478428	55478435	1	36	540.614	-	-	6	1	1	AC022724.2|ENST00000507923|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC022724.2|ENST00000507923|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	14	9	14	9	0	0	./.	5	5	5	6	21	27	21	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760076256	18	56022449	GA	G	540	PASS	NEDD4L	CCDS45872.1	r.?	-	-	Del	intronic	D	56022449	56022458	1	28	488.72	-	-	8	1	1	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	6	3	11	5	34	30	34	30	11	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760076600	18	56872643	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	56872643	56872649	1	18	375.901	-	-	5	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	5	3	5	28	28	28	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760076764	18	57360708	TA	T	269	PASS	CCBE1	CCDS32838.1	r.?	-	-	Del	intronic	D	57360708	57360715	1	10	271.511	-	-	6	1	1	CCBE1|CCDS32838.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCBE1|CCDS32838.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	1	5	1	34	17	34	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077002	18	58045393	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	58045393	58045399	1	16	322.201	-	-	5	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	3	5	4	27	17	27	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077145	18	58519733	TAAAC	T	300	PASS	-	-	-	-	-	Del	-	D	58519733	58519741	4	12	271.511	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	4	2	31	29	31	29	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077156	18	58571789	AT	A	300	PASS	-	-	-	-	-	Del	-	D	58571789	58571799	1	12	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	3	4	25	24	25	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077182	18	58711269	AT	A	289	PASS	-	-	-	-	-	Del	-	D	58711269	58711276	1	20	379.514	-	-	6	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	3	4	3	6	23	21	23	21	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077244	18	59024973	GT	G	689	PASS	-	-	-	-	-	Del	-	D	59024973	59024983	1	48	651.627	-	-	9	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	5	7	7	8	27	32	27	32	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077271	18	59127327	CA	C	300	PASS	-	-	-	-	-	Del	-	D	59127327	59127337	1	12	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	5	2	33	25	33	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077589	18	60051042	CT	C	420	PASS	TNFRSF11A	CCDS11980.1	r.?	-	-	Del	intronic	D	60051042	60051052	1	20	378.309	-	-	9	1	1	TNFRSF11A|CCDS11980.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNFRSF11A|CCDS11980.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	3	6	6	33	26	33	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077659	18	60289213	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	60289213	60289220	1	18	374.697	-	-	6	1	1	-	-	./.	0	0	0	0	11	6	12	6	0	0	./.	2	5	5	7	39	38	39	39	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760077946	18	61154391	CT	C	300	PASS	SERPINB5	CCDS32839.1	r.?	-	-	Del	intronic	D	61154391	61154399	1	12	271.511	-	-	7	1	1	SERPINB5|CCDS32839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SERPINB5|CCDS32839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	3	5	23	28	23	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078085	18	61658777	GT	G	660	PASS	SERPINB8	CCDS11991.1	r.?	-	-	Del	downstream	D	61658777	61658787	1	42	597.325	-	-	9	1	1	SERPINB8|CCDS11991.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SERPINB8|CCDS11991.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	23	19	23	19	0	0	./.	5	6	6	7	27	16	27	16	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078159	18	61979578	GT	G	300	PASS	-	-	-	-	-	Del	-	D	61979578	61979587	1	10	270.307	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	1	5	1	23	17	23	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078316	18	62366847	TA	T	360	PASS	-	-	-	-	-	Del	-	D	62366847	62366854	1	15	325.813	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	2	5	16	21	16	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078574	18	63317583	TG	T	300	PASS	-	-	-	-	-	Del	-	D	63317583	63317586	1	12	271.511	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	7	5	29	35	29	35	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078623	18	63563365	AT	A	480	PASS	-	-	-	-	-	Del	-	D	63563365	63563371	1	16	434.418	-	-	5	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	7	1	7	1	26	17	26	17	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078642	18	63664396	TA	T	420	PASS	-	-	-	-	-	Del	-	D	63664396	63664406	1	14	380.116	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	6	1	7	2	30	19	30	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760078786	18	64325251	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	64325251	64325260	1	6	267.297	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	0	5	1	7	13	26	13	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079094	18	65308774	CA	C	360	PASS	AC114689.1	ENST00000500778	r.?	-	-	Del	intronic	D	65308774	65308784	1	15	325.813	-	-	9	1	1	AC114689.1|ENST00000500778|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC114689.1|ENST00000500778|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	2	5	6	17	6	17	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079124	18	65439988	CT	C	360	PASS	AC114689.1	ENST00000500778	r.?	-	-	Del	intronic	D	65439988	65439998	1	15	325.813	-	-	9	1	1	AC114689.1|ENST00000500778|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC114689.1|ENST00000500778|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	4	2	5	4	21	22	21	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079367	18	66065752	AT	A	314	PASS	-	-	-	-	-	Del	-	D	66065752	66065762	1	16	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	3	5	4	38	21	38	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079509	18	66439473	CT	C	300	PASS	CCDC102B	CCDS11996.2	r.?	-	-	Del	intronic	D	66439473	66439483	1	10	271.511	-	-	9	1	1	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	1	5	2	20	15	20	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079635	18	66855727	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	66855727	66855736	1	30	483.302	-	-	8	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	4	5	4	7	26	15	26	16	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079828	18	67408695	A	AT	540	PASS	DOK6	CCDS32841.1	r.?	-	-	Ins	intronic	I	67408695	67408703	1	28	483.302	-	-	7	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	3	6	3	7	15	25	16	25	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760079898	18	67580119	TTC	T	480	PASS	CD226	CCDS11997.1	r.?	-	-	Del	intronic	D	67580119	67580132	2	25	434.418	-	-	6	1	1	CD226|CCDS11997.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD226|CCDS11997.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	4	4	6	4	30	20	30	20	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080026	18	67957703	GA	G	300	PASS	SOCS6	CCDS11998.1	r.?	-	-	Del	intronic	D	67957703	67957711	1	6	269.705	-	-	7	1	1	SOCS6|CCDS11998.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SOCS6|CCDS11998.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	0	5	0	7	25	38	25	38	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080078	18	68089460	A	AT	360	PASS	AC013558.1	ENST00000511515	r.?	-	-	Ins	intronic	I	68089460	68089469	1	15	318.589	-	-	8	1	1	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	9	13	0	0	./.	2	4	2	5	30	37	30	37	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080157	18	68382572	GA	G	326	PASS	-	-	-	-	-	Del	-	D	68382572	68382579	1	12	325.813	-	-	6	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	1	5	3	11	35	40	35	40	3	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080339	18	68941291	CA	C	360	PASS	-	-	-	-	-	Del	-	D	68941291	68941301	1	15	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	2	4	4	6	19	31	19	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080549	18	69634492	CA	C	360	PASS	-	-	-	-	-	Del	-	D	69634492	69634500	1	16	325.211	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	3	4	3	21	16	21	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080634	18	70005159	AT	A	420	PASS	-	-	-	-	-	Del	-	D	70005159	70005167	1	18	380.116	-	-	7	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	5	2	6	3	31	8	31	8	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080714	18	70287487	CT	C	360	PASS	-	-	-	-	-	Del	-	D	70287487	70287497	1	16	325.813	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	3	4	27	24	27	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080722	18	70307878	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	70307878	70307885	1	12	265.491	-	-	6	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	3	2	3	14	9	15	9	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760080938	18	71001830	GT	G	420	PASS	-	-	-	-	-	Del	-	D	71001830	71001838	1	18	380.116	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	5	3	6	4	20	4	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081069	18	71397976	CT	C	300	PASS	-	-	-	-	-	Del	-	D	71397976	71397983	1	10	271.511	-	-	6	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	1	4	4	6	31	38	31	38	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081348	18	72276752	TA	T	300	PASS	-	-	-	-	-	Del	-	D	72276752	72276761	1	12	271.511	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	4	5	25	18	25	18	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081363	18	72397156	AT	A	300	PASS	ZNF407	CCDS45885.1	r.?	-	-	Del	intronic	D	72397156	72397165	1	6	271.511	-	-	8	1	1	ZNF407|CCDS45885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF407|CCDS45885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	0	6	0	20	6	20	6	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081380	18	72474667	TA	T	420	PASS	ZNF407	CCDS45885.1	r.?	-	-	Del	intronic	D	72474667	72474672	1	18	378.912	-	-	4	1	1	ZNF407|CCDS45885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF407|CCDS45885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	5	2	5	2	18	13	18	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081456	18	72791462	GT	G	389	PASS	-	-	-	-	-	Del	-	D	72791462	72791465	1	18	359.646	-	-	2	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	5	6	7	27	28	27	28	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081478	18	72871974	GT	G	300	PASS	-	-	-	-	-	Del	-	D	72871974	72871983	1	10	271.511	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	6	1	27	26	27	26	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081591	18	73249610	GT	G	300	PASS	-	-	-	-	-	Del	-	D	73249610	73249620	1	10	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	5	1	23	11	23	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081706	18	73708624	AT	A	420	PASS	-	-	-	-	-	Del	-	D	73708624	73708633	1	20	379.514	-	-	8	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	4	3	4	16	25	16	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760081947	18	74384281	CA	C	540	PASS	-	-	-	-	-	Del	-	D	74384281	74384290	1	28	488.118	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	6	3	5	23	39	23	39	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082007	18	74517793	AT	A	300	PASS	-	-	-	-	-	Del	-	D	74517793	74517803	1	12	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	4	3	28	26	28	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082156	18	74928695	CA	C	658	PASS	-	-	-	-	-	Del	-	D	74928695	74928697	1	49	651.025	-	-	1	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	6	6	6	8	29	31	29	31	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082411	18	75683068	G	GA	420	PASS	AC134978.1	ENST00000505670	r.?	-	-	Ins	downstream	I	75683068	75683075	1	18	375.901	-	-	6	1	1	AC134978.1|ENST00000505670|r.?|-|-|non_protein_coding:insertion:500B_downstream_variant|SO:0000011:SO:0000667:SO:0001634	AC134978.1|ENST00000505670|r.?|-|-|non_protein_coding:insertion:500B_downstream_variant|SO:0000011:SO:0000667:SO:0001634	./.	0	0	0	0	10	11	10	11	0	0	./.	2	5	4	8	31	26	31	26	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082445	18	75849126	GT	G	420	PASS	-	-	-	-	-	Del	-	D	75849126	75849136	1	18	377.707	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	6	4	35	27	35	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082541	18	76123282	AT	A	420	PASS	-	-	-	-	-	Del	-	D	76123282	76123289	1	14	380.116	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	1	6	2	6	22	32	22	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082545	18	76140891	TA	T	300	PASS	-	-	-	-	-	Del	-	D	76140891	76140898	1	10	271.511	-	-	6	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	1	4	1	4	23	15	23	15	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082608	18	76271447	TC	T	480	PASS	-	-	-	-	-	Del	-	D	76271447	76271449	1	21	432.01	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	6	6	9	27	32	27	32	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760082904	18	77268803	ATC	A	360	PASS	NFATC1	CCDS12016.1	r.?	-	-	Del	intronic	D	77268803	77268818	2	7	325.211	-	-	7	1	1	NFATC1|CCDS12016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFATC1|CCDS12016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	0	6	2	6	26	29	26	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083033	18	77700228	CG	C	300	PASS	PQLC1	CCDS12020.1	r.?	-	-	Del	intronic	D	77700228	77700235	1	12	271.511	-	-	6	1	1	PQLC1|CCDS12020.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PQLC1|CCDS12020.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	4	2	20	29	20	29	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083053	18	77732074	TA	T	360	PASS	TXNL4A	CCDS32852.1	r.?	-	-	Del	downstream	D	77732074	77732081	1	16	325.813	-	-	6	1	1	TXNL4A|CCDS32852.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TXNL4A|CCDS32852.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	3	3	28	20	28	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083086	18	77823566	AT	A	300	PASS	-	-	-	-	-	Del	-	D	77823566	77823576	1	10	271.511	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	1	7	3	26	27	26	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083116	18	77884425	AT	A	360	PASS	ADNP2	CCDS32853.1	r.?	-	-	Del	intronic	D	77884425	77884433	1	7	324.609	-	-	7	1	1	ADNP2|CCDS32853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADNP2|CCDS32853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	0	6	0	32	6	32	6	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083244	19	389958	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	389958	389973	2	15	325.622	-	-	7	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	2	5	2	24	19	24	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083399	19	768828	G	GT	269	PASS	C19orf21	CCDS12042.1	r.?	-	-	Ins	downstream	I	768828	768835	1	12	267.739	-	-	6	1	1	C19orf21|CCDS12042.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C19orf21|CCDS12042.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	14	7	15	0	0	./.	2	3	5	4	29	37	29	37	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083520	19	1004498	A	AC	300	PASS	GRIN3B	CCDS32861.1	r.?	-	-	Ins	intronic	I	1004498	1004507	1	12	261.117	-	-	8	1	1	GRIN3B|CCDS32861.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIN3B|CCDS32861.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	6	5	26	26	26	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083531	19	1045657	TC	T	300	PASS	ABCA7	CCDS12055.1	r.?	-	-	Del	intronic	D	1045657	1045665	1	12	265.933	-	-	7	1	1	ABCA7|CCDS12055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCA7|CCDS12055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	4	5	20	26	20	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083550	19	1078447	G	GT	300	PASS	HMHA1	CCDS32863.1	r.?	-	-	Ins	intronic	I	1078447	1078454	1	12	266.535	-	-	6	1	1	HMHA1|CCDS32863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMHA1|CCDS32863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	3	4	24	31	24	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083594	19	1180111	CT	C	360	PASS	-	-	-	-	-	Del	-	D	1180111	1180120	1	15	325.622	-	-	8	1	-	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	3	6	28	30	28	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083597	19	1185220	GA	G	420	PASS	-	-	-	-	-	Del	-	D	1185220	1185229	1	14	379.892	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	1	6	4	6	23	22	23	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083649	19	1312771	TG	T	269	PASS	MUM1	CCDS12062.1	r.?	-	-	Del	intronic	D	1312771	1312779	1	12	270.75	-	-	7	1	1	MUM1|CCDS12062.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MUM1|CCDS12062.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	2	3	2	5	21	25	21	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083690	19	1412211	AG	A	420	PASS	DAZAP1	CCDS12066.1	r.?	-	-	Del	intronic	D	1412211	1412219	1	20	378.086	-	-	7	1	1	DAZAP1|CCDS12066.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAZAP1|CCDS12066.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	3	4	5	5	17	27	17	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083695	19	1437836	ACCT	A	509	PASS	DAZAP1	CCDS12066.1	r.?	-	-	Del	downstream	D	1437836	1437843	3	30	488.433	-	-	2	1	1	DAZAP1|CCDS12066.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RPS15|CCDS12067.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	4	8	4	0	0	./.	5	4	5	4	26	35	26	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083696	19	1443902	CAG	C	300	PASS	RPS15	CCDS12067.1	r.?	-	-	Del	downstream	D	1443902	1443907	2	12	270.148	-	-	2	1	1	RPS15|CCDS12067.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RPS15|CCDS12067.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	3	3	22	24	22	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083699	19	1449940	CG	C	360	PASS	APC2	CCDS12068.1	r.?	-	-	Del	upstream	D	1449940	1449948	1	16	325.622	-	-	7	1	1	APC2|CCDS12068.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	APC2|CCDS12068.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	3	4	38	21	38	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083758	19	1605924	CTT	C	540	PASS	TCF3	CCDS12074.1	r.?	-	-	Del	downstream	D	1605924	1605928	2	30	487.831	-	-	3	1	1	TCF3|CCDS12074.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	UQCR11|CCDS12073.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	8	6	8	0	0	./.	5	4	5	4	21	24	21	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083774	19	1657095	TG	T	540	PASS	TCF3	CCDS12074.1	r.?	-	-	Del	upstream	D	1657095	1657099	1	24	480.004	-	-	3	1	1	TCF3|CCDS12074.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TCF3|CCDS12074.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	4	8	4	0	0	./.	7	2	8	3	31	17	31	17	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083777	19	1663972	C	CCCT	300	PASS	-	-	-	-	-	Ins	-	I	1663972	1663982	3	12	262.321	-	-	3	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	3	2	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760083861	19	1825936	T	TG	329	PASS	MIR1909	CCDS32866.1	r.2012_2013insc	c.1917_1918insC	p.K640fs*6	Ins	frameshift	I	1825936	1825943	1	16	322.01	-	-	6	1	1	MIR1909|CCDS32866.1|r.2012_2013insc|c.1917_1918insC|p.K640fs*6|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MIR1909|CCDS32866.1|r.2012_2013insc|c.1917_1918insC|p.K640fs*6|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	5	10	6	10	0	0	./.	3	3	4	3	31	21	31	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084111	19	2430510	TA	T	360	PASS	LMNB2	CCDS12090.1	r.2324delU	c.?	p.?	Del	3'UTR variant	D	2430510	2430518	1	15	323.214	-	-	7	1	1	LMNB2|CCDS12090.1|r.2324delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	LMNB2|CCDS12090.1|r.2324delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	4	3	30	25	30	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084182	19	2555097	T	TA	360	PASS	GNG7	CCDS12091.1	r.?	-	-	Ins	intronic	I	2555097	2555104	1	16	322.01	-	-	6	1	1	GNG7|CCDS12091.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GNG7|CCDS12091.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	8	2	8	0	0	./.	3	3	5	4	27	30	28	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084223	19	2603075	CT	C	277	PASS	GNG7	CCDS12091.1	r.?	-	-	Del	intronic	D	2603075	2603084	1	10	271.352	-	-	8	1	1	GNG7|CCDS12091.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNG7|CCDS12091.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	1	4	1	5	24	27	24	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084366	19	2905881	GA	G	397	PASS	ZNF57	CCDS12098.1	r.?	-	-	Del	intronic	D	2905881	2905890	1	18	378.086	-	-	8	1	1	ZNF57|CCDS12098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF57|CCDS12098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	2	5	3	30	19	30	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084442	19	3027991	G	GC	360	PASS	TLE2	CCDS45911.1	r.?	-	-	Ins	intronic	I	3027991	3028000	1	16	320.203	-	-	8	1	1	TLE2|CCDS45911.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TLE2|CCDS45911.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	8	4	8	0	0	./.	3	3	4	3	25	32	25	32	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084668	19	3471820	TG	T	300	PASS	C19orf77	CCDS45915.1	r.?	-	-	Del	downstream	D	3471820	3471828	1	10	271.352	-	-	7	1	1	C19orf77|CCDS45915.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C19orf77|CCDS45915.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	6	10	6	0	0	./.	4	1	4	2	26	14	26	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084682	19	3517803	TAAAC	T	269	PASS	FZR1	CCDS12109.1	r.?	-	-	Del	intronic	D	3517803	3517811	4	12	271.352	-	-	1	1	1	FZR1|CCDS12109.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FZR1|CCDS12109.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	2	3	4	4	37	25	37	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084695	19	3571825	G	GT	300	PASS	RAX2	CCDS12112.1	r.?	-	-	Ins	intronic	I	3571825	3571826	1	12	252.688	-	-	0	1	1	RAX2|CCDS12112.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	RAX2|CCDS12112.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	13	8	0	0	./.	3	2	5	3	30	25	30	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084731	19	3705637	TA	T	420	PASS	RAX2	CCDS12112.1	r.?	-	-	Del	intronic	D	3705637	3705646	1	18	379.892	-	-	8	1	1	RAX2|CCDS12112.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	RAX2|CCDS12112.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	2	7	2	28	30	28	30	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084855	19	3971320	G	GA	360	PASS	EEF2	CCDS12117.1	r.?	-	-	Ins	downstream	I	3971320	3971327	1	16	318.999	-	-	6	1	1	EEF2|CCDS12117.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DAPK3|CCDS12116.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	5	4	27	23	27	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084868	19	3998869	TG	T	569	PASS	-	-	-	-	-	Del	-	D	3998869	3998876	1	20	529.458	-	-	6	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	1	9	4	10	25	34	25	34	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084887	19	4038620	TG	T	420	PASS	PIAS4	CCDS12118.1	r.2292delG	c.?	p.?	Del	3'UTR variant	D	4038620	4038628	1	8	379.892	-	-	7	1	1	PIAS4|CCDS12118.1|r.2292delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PIAS4|CCDS12118.1|r.2292delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	4	17	4	0	0	./.	7	0	9	0	28	11	28	11	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760084908	19	4074490	CA	C	269	PASS	-	-	-	-	-	Del	-	D	4074490	4074499	1	12	268.943	-	-	8	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	2	3	7	4	34	24	34	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760085173	19	4515293	G	GT	449	PASS	PLIN4	CCDS45927.1	r.?	-	-	Ins	intronic	I	4515293	4515300	1	24	429.346	-	-	6	1	1	PLIN4|CCDS45927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLIN4|CCDS45927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	3	8	3	35	13	35	13	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760085208	19	4593474	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	4593474	4593483	1	12	259.311	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	12	0	0	./.	2	3	4	4	30	21	30	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760085535	19	5222730	CG	C	420	PASS	PTPRS	CCDS45930.1	r.3306delC	c.3072delC	p.V1025fs*18	Del	frameshift	D	5222730	5222738	1	14	378.688	-	-	7	1	1	PTPRS|CCDS45930.1|r.3306delC|c.3072delC|p.V1025fs*18|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PTPRS|CCDS45930.1|r.3306delC|c.3072delC|p.V1025fs*18|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	9	10	9	0	0	./.	6	1	7	1	30	14	30	14	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760085919	19	5942559	CA	C	660	PASS	RANBP3	CCDS42478.1	r.?	-	-	Del	intronic	D	5942559	5942568	1	42	596.974	-	-	8	1	1	RANBP3|CCDS42478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP3|CCDS42478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	5	6	6	8	35	23	35	23	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086000	19	6187352	TAAG	T	356	PASS	ACSBG2	CCDS12159.1	r.1842_1844delAAG	c.1600_1602delAAG	p.K536delK	Del	inframe	D	6187352	6187363	3	25	434.163	-	-	3	1	1	ACSBG2|CCDS12159.1|r.1842_1844delAAG|c.1600_1602delAAG|p.K536delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	ACSBG2|CCDS12159.1|r.1842_1844delAAG|c.1600_1602delAAG|p.K536delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	5	10	5	10	0	0	./.	4	4	4	6	28	27	28	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086019	19	6247204	TG	T	360	PASS	MLLT1	CCDS12160.1	r.?	-	-	Del	intronic	D	6247204	6247210	1	15	325.622	-	-	5	1	1	MLLT1|CCDS12160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLLT1|CCDS12160.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	4	2	9	3	40	26	40	26	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086099	19	6430130	GC	G	269	PASS	SLC25A41	CCDS45937.1	r.491delG	c.405delG	p.L136fs*75	Del	frameshift	D	6430130	6430138	1	12	252.086	-	-	7	1	1	SLC25A41|CCDS45937.1|r.491delG|c.405delG|p.L136fs*75|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SLC25A41|CCDS45937.1|r.491delG|c.405delG|p.L136fs*75|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	4	11	4	0	0	./.	2	3	2	3	23	19	23	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086211	19	6606542	ATTGT	A	389	PASS	-	-	-	-	-	Del	-	D	6606542	6606551	4	20	379.29	-	-	2	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	4	3	4	5	29	28	29	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086235	19	6640632	T	TG	660	PASS	-	-	-	-	-	Ins	-	I	6640632	6640639	1	42	590.351	-	-	6	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	6	6	8	29	31	29	31	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086357	19	6887378	GGA	G	300	PASS	EMR1	CCDS12175.1	r.?	-	-	Del	upstream	D	6887378	6887393	2	12	271.352	-	-	7	1	1	EMR1|CCDS12175.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	EMR1|CCDS12175.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	3	25	27	25	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086710	19	7518091	TC	T	420	PASS	ARHGEF18	CCDS45946.1	r.?	-	-	Del	intronic	D	7518091	7518101	1	20	378.086	-	-	9	1	1	ARHGEF18|CCDS45946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF18|CCDS45946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	4	3	6	7	21	35	21	35	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760086762	19	7622224	ACG	A	269	PASS	PNPLA6	CCDS32891.1	r.?	-	-	Del	intronic	D	7622224	7622228	2	10	264.127	-	-	1	1	1	PNPLA6|CCDS32891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PNPLA6|CCDS32891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	4	2	29	21	29	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760087032	19	8161914	TG	T	300	PASS	FBN3	CCDS12196.1	r.?	-	-	Del	intronic	D	8161914	8161920	1	10	269.546	-	-	5	1	1	FBN3|CCDS12196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBN3|CCDS12196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	4	1	6	1	31	17	31	17	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760087399	19	8885260	TC	T	337	PASS	-	-	-	-	-	Del	-	D	8885260	8885269	1	13	647.03	-	-	8	1	1	-	-	./.	0	0	0	0	5	21	6	29	0	0	./.	0	12	0	12	41	79	46	89	0	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760087851	19	9690604	C	CA	600	PASS	ZNF121	CCDS32902.1	r.?	-	-	Ins	intronic	I	9690604	9690611	1	32	534.877	-	-	6	1	1	ZNF121|CCDS32902.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF121|CCDS32902.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	7	5	7	28	34	28	35	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760087880	19	9765646	CA	C	420	PASS	ZNF562	CCDS45956.1	r.?	-	-	Del	intronic	D	9765646	9765656	1	18	379.29	-	-	9	1	1	ZNF562|CCDS45956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF562|CCDS45956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	5	2	8	4	32	37	32	37	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760087933	19	9884087	A	AGT	300	PASS	ZNF846	CCDS42496.1	r.?	-	-	Ins	upstream	I	9884087	9884102	2	10	265.331	-	-	7	1	-	ZNF846|CCDS42496.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZNF846|CCDS42496.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	14	9	14	0	0	./.	4	1	5	2	30	14	30	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088055	19	10090753	TC	T	418	PASS	COL5A3	CCDS12222.1	r.?	-	-	Del	intronic	D	10090753	10090760	1	24	434.163	-	-	6	1	1	COL5A3|CCDS12222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL5A3|CCDS12222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	5	5	7	27	29	27	29	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088126	19	10210921	CA	C	387	PASS	ANGPTL6	CCDS12224.1	r.?	-	-	Del	intronic	D	10210921	10210931	1	21	434.163	-	-	9	1	1	ANGPTL6|CCDS12224.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANGPTL6|CCDS12224.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	6	4	7	26	27	26	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088166	19	10292523	C	CA	420	PASS	DNMT1	CCDS45958.1	r.?	-	-	Ins	intronic	I	10292523	10292533	1	14	374.474	-	-	9	1	1	DNMT1|CCDS45958.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNMT1|CCDS45958.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	1	9	3	34	17	34	17	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088205	19	10341541	G	GC	300	PASS	S1PR2	CCDS12229.1	r.?	-	-	Ins	intronic	I	10341541	10341551	1	10	266.535	-	-	9	1	1	S1PR2|CCDS12229.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	S1PR2|CCDS12229.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	4	1	10	3	32	27	32	27	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088447	19	10815271	CT	C	300	PASS	QTRT1	CCDS12248.1	r.?	-	-	Del	intronic	D	10815271	10815281	1	12	268.341	-	-	9	1	1	QTRT1|CCDS12248.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	QTRT1|CCDS12248.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	3	5	27	22	27	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088487	19	10896495	C	CT	389	PASS	DNM2	CCDS45969.1	r.?	-	-	Ins	intronic	I	10896495	10896505	1	18	375.678	-	-	9	1	1	DNM2|CCDS45969.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNM2|CCDS45969.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	2	6	3	35	25	35	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088574	19	11150031	GA	G	420	PASS	SMARCA4	CCDS45971.1	r.?	-	-	Del	intronic	D	11150031	11150039	1	20	379.892	-	-	7	1	1	SMARCA4|CCDS45971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCA4|CCDS45971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	4	5	12	32	12	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088701	19	11366245	CT	C	346	PASS	DOCK6	CCDS45975.1	r.?	-	-	Del	intronic	D	11366245	11366254	1	16	323.816	-	-	8	1	1	DOCK6|CCDS45975.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK6|CCDS45975.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	3	3	4	21	29	21	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088755	19	11471110	T	TA	300	PASS	ENSG00000105520	CCDS12258.1	r.?	-	-	Ins	intronic	I	11471110	11471119	1	10	267.137	-	-	8	1	1	ENSG00000105520|CCDS12258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000105520|CCDS12258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	1	4	3	7	24	29	24	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088801	19	11577822	TG	T	485	PASS	ELAVL3	CCDS32912.1	r.?	-	-	Del	intronic	D	11577822	11577829	1	28	487.229	-	-	6	1	1	ELAVL3|CCDS32912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELAVL3|CCDS32912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	6	4	7	25	26	25	26	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760088806	19	11596767	AT	A	360	PASS	ELAVL3	CCDS32912.1	r.?	-	-	Del	upstream	D	11596767	11596776	1	15	324.418	-	-	8	1	1	ELAVL3|CCDS32912.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF653|CCDS12261.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	4	2	5	3	29	27	29	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089045	19	12142917	CT	C	360	PASS	ZNF433	CCDS45983.1	r.?	-	-	Del	intronic	D	12142917	12142927	1	16	325.02	-	-	9	1	1	ZNF433|CCDS45983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF433|CCDS45983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	3	5	34	24	34	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089108	19	12325990	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	12325990	12325999	1	30	483.015	-	-	8	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	5	4	6	5	15	32	15	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089311	19	12777568	GC	G	420	PASS	MAN2B1	CCDS32919.1	r.?	-	-	Del	upstream	D	12777568	12777573	1	20	378.688	-	-	4	1	1	MAN2B1|CCDS32919.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MAN2B1|CCDS32919.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	6	10	6	0	0	./.	3	4	5	6	25	29	25	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089318	19	12800973	GC	G	360	PASS	FBXW9	CCDS12278.2	r.?	-	-	Del	intronic	D	12800973	12800982	1	15	325.622	-	-	8	1	1	FBXW9|CCDS12278.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW9|ENST00000380339|r.961delG|c.924delG|p.P309fs*22|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	6	5	6	0	0	./.	4	2	7	4	19	28	19	28	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089563	19	13347712	TG	T	300	PASS	CACNA1A	CCDS45998.1	r.?	-	-	Del	intronic	D	13347712	13347721	1	10	271.352	-	-	8	1	1	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	1	4	4	6	18	31	18	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089655	19	13538759	GT	G	420	PASS	CACNA1A	CCDS45998.1	r.?	-	-	Del	intronic	D	13538759	13538769	1	20	379.29	-	-	9	1	1	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	4	3	5	3	30	20	30	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089693	19	13631256	CT	C	360	PASS	-	-	-	-	-	Del	-	D	13631256	13631264	1	7	325.622	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	0	6	1	7	7	45	7	45	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089741	19	13761989	CA	C	360	PASS	-	-	-	-	-	Del	-	D	13761989	13761997	1	16	325.622	-	-	7	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	3	4	4	31	23	31	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089826	19	13924428	GA	G	300	PASS	ZSWIM4	CCDS32924.1	r.?	-	-	Del	intronic	D	13924428	13924438	1	12	271.352	-	-	9	1	1	ZSWIM4|CCDS32924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZSWIM4|CCDS32924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	3	5	22	25	22	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089871	19	14042032	T	TG	480	PASS	CC2D1A	CCDS42512.1	r.?	-	-	Ins	downstream	I	14042032	14042041	1	21	429.346	-	-	8	1	1	CC2D1A|CCDS42512.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	CC2D1A|CCDS42512.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	6	4	6	4	0	0	./.	2	6	3	7	22	34	22	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760089988	19	14365463	AT	A	300	PASS	-	-	-	-	-	Del	-	D	14365463	14365471	1	10	271.352	-	-	7	1	1	-	-	./.	0	0	0	0	12	3	12	3	0	0	./.	4	1	4	2	34	12	34	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090039	19	14431800	CT	C	420	PASS	-	-	-	-	-	Del	-	D	14431800	14431810	1	20	376.28	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	4	4	5	27	25	27	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090537	19	15320501	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	15320501	15320510	1	12	267.137	-	-	8	1	1	-	-	./.	0	0	0	0	15	20	15	21	0	0	./.	2	3	2	5	26	27	26	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090584	19	15493914	A	AT	480	PASS	AKAP8	CCDS12329.1	r.?	-	-	Ins	upstream	I	15493914	15493920	1	24	429.346	-	-	5	1	1	AKAP8|CCDS12329.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	AKAP8L|CCDS46005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	7	3	33	24	34	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090689	19	15716625	AT	A	300	PASS	-	-	-	-	-	Del	-	D	15716625	15716632	1	6	270.75	-	-	6	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	5	0	8	0	25	20	25	20	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090796	19	16111959	CT	C	840	PASS	-	-	-	-	-	Del	-	D	16111959	16111968	1	64	759.785	-	-	8	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	7	7	10	7	35	26	35	26	10	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090804	19	16164183	AT	A	420	PASS	-	-	-	-	-	Del	-	D	16164183	16164192	1	18	379.892	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	2	6	3	32	18	32	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090898	19	16331211	G	GT	480	PASS	AP1M1	CCDS46008.1	r.?	-	-	Ins	intronic	I	16331211	16331220	1	24	423.326	-	-	8	1	1	AP1M1|CCDS46008.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AP1M1|CCDS46008.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	5	3	6	6	32	31	32	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760090955	19	16421909	GA	G	300	PASS	-	-	-	-	-	Del	-	D	16421909	16421919	1	6	267.739	-	-	9	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	0	6	1	28	7	28	7	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760091049	19	16592553	GC	G	250	PASS	CALR3	CCDS12344.1	r.?	-	-	Del	intronic	D	16592553	16592560	1	12	271.352	-	-	6	1	1	CALR3|CCDS12344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALR3|CCDS12344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	3	2	5	13	25	13	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760091330	19	17114267	CAA	C	300	PASS	CPAMD8	CCDS42519.1	r.?	-	-	Del	intronic	D	17114267	17114271	2	10	270.148	-	-	3	1	1	CPAMD8|CCDS42519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPAMD8|CCDS42519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	1	4	2	4	20	29	20	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760091335	19	17119747	CA	C	360	PASS	CPAMD8	CCDS42519.1	r.?	-	-	Del	intronic	D	17119747	17119757	1	12	325.622	-	-	9	1	1	CPAMD8|CCDS42519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPAMD8|CCDS42519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	1	5	2	5	23	29	23	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760091598	19	17550833	CA	C	403	PASS	TMEM221	ENST00000341130	r.?	-	-	Del	intronic	D	17550833	17550840	1	14	365.443	-	-	6	1	1	TMEM221|ENST00000341130|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM221|ENST00000341130|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	6	1	6	1	23	26	23	26	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760091810	19	17975658	CT	C	300	PASS	RPL18A	CCDS12367.1	r.?	-	-	Del	downstream	D	17975658	17975666	1	12	271.352	-	-	7	1	1	RPL18A|CCDS12367.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RPL18A|CCDS12367.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	6	14	6	0	0	./.	2	3	4	4	25	27	25	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760091963	19	18269441	CA	C	449	PASS	PIK3R2	CCDS12371.1	r.?	-	-	Del	intronic	D	18269441	18269450	1	24	434.163	-	-	8	1	1	PIK3R2|CCDS12371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3R2|CCDS12371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	3	6	4	18	28	18	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092070	19	18408170	CA	C	360	PASS	-	-	-	-	-	Del	-	D	18408170	18408180	1	15	325.02	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	2	5	33	36	33	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092102	19	18466078	CT	C	509	PASS	PGPEP1	CCDS12375.1	r.?	-	-	Del	intronic	D	18466078	18466088	1	30	484.219	-	-	9	1	1	PGPEP1|CCDS12375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGPEP1|CCDS12375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	5	4	7	4	25	25	25	25	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092153	19	18620616	AC	A	322	PASS	ELL	CCDS12380.1	r.?	-	-	Del	intronic	D	18620616	18620624	1	15	325.622	-	-	7	1	1	ELL|CCDS12380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELL|CCDS12380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	6	2	28	25	28	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092216	19	18806124	CT	C	420	PASS	CRTC1	CCDS42525.1	r.?	-	-	Del	intronic	D	18806124	18806132	1	18	379.892	-	-	7	1	1	CRTC1|CCDS42525.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRTC1|CCDS42525.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	5	12	6	28	32	28	32	12	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092281	19	18992637	AT	A	300	PASS	GDF1	CCDS42526.1	r.?	-	-	Del	intronic	D	18992637	18992647	1	10	271.352	-	-	9	1	1	GDF1|CCDS42526.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GDF1|CCDS42526.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	4	1	31	21	31	21	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092380	19	19224871	AT	A	360	PASS	SLC25A42	CCDS32966.1	r.?	-	-	Del	downstream	D	19224871	19224881	1	12	323.816	-	-	9	1	1	SLC25A42|CCDS32966.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC25A42|CCDS32966.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	12	6	12	0	0	./.	5	1	7	3	27	29	27	29	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092422	19	19343648	TA	T	360	PASS	NCAN	CCDS12397.1	r.?	-	-	Del	intronic	D	19343648	19343656	1	16	325.622	-	-	7	1	1	NCAN|CCDS12397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCAN|CCDS12397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	4	5	18	24	18	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092440	19	19414335	CA	C	540	PASS	SF4	CCDS12399.1	r.?	-	-	Del	intronic	D	19414335	19414343	1	30	487.831	-	-	7	1	1	SF4|CCDS12399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SF4|CCDS12399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	5	4	6	6	20	20	20	20	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092479	19	19493750	GA	G	420	PASS	GATAD2A	CCDS12402.2	r.?	-	-	Del	upstream	D	19493750	19493760	1	20	376.28	-	-	9	1	1	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	11	11	11	0	0	./.	4	3	5	4	25	27	25	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092487	19	19505758	CT	C	420	PASS	GATAD2A	CCDS12402.2	r.?	-	-	Del	intronic	D	19505758	19505768	1	18	374.474	-	-	9	1	1	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	5	4	5	24	28	24	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092488	19	19513960	CTTAA	C	298	PASS	GATAD2A	CCDS12402.2	r.?	-	-	Del	intronic	D	19513960	19513968	4	16	325.622	-	-	1	1	1	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	3	3	4	3	22	20	22	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092621	19	19901779	GT	G	360	PASS	ZNF506	CCDS42531.1	r.?	-	-	Del	intronic	D	19901779	19901789	1	7	321.408	-	-	9	1	1	ZNF506|CCDS42531.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ZNF506|CCDS42531.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	0	7	0	23	2	23	2	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092635	19	19969669	TA	T	360	PASS	AC011477.2	ENST00000499171	r.?	-	-	Del	intronic	D	19969669	19969679	1	7	325.622	-	-	9	1	1	AC011477.2|ENST00000499171|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC011477.2|ENST00000499171|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	6	0	9	0	37	11	37	11	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092642	19	19979369	C	CT	420	PASS	ZNF90	CCDS42532.1	r.?	-	-	Ins	intronic	I	19979369	19979378	1	14	375.076	-	-	8	1	1	ZNF90|CCDS42532.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF90|CCDS42532.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	15	18	0	0	./.	1	6	1	7	3	25	3	25	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092657	19	20080933	T	TA	420	PASS	ZNF90	ENST00000427401	r.?	-	-	Ins	intronic	I	20080933	20080941	1	20	375.678	-	-	7	1	1	ZNF90|ENST00000427401|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF90|ENST00000427401|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	3	4	9	21	9	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092763	19	20288744	CT	C	480	PASS	ZNF90	CCDS46029.1	r.?	-	-	Del	intronic	D	20288744	20288754	1	24	433.561	-	-	9	1	1	ZNF90|CCDS46029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF90|CCDS46029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	3	5	30	27	30	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760092859	19	20676779	CA	C	287	PASS	-	-	-	-	-	Del	-	D	20676779	20676787	1	30	488.433	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	4	5	4	33	33	33	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093282	19	21507044	CA	C	269	PASS	ZNF708	CCDS32980.1	r.?	-	-	Del	intronic	D	21507044	21507054	1	12	265.331	-	-	9	1	1	ZNF708|CCDS32980.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF708|CCDS32980.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	5	3	23	24	23	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093291	19	21524202	GT	G	411	PASS	-	-	-	-	-	Del	-	D	21524202	21524208	1	20	379.29	-	-	5	1	1	-	-	./.	0	0	0	0	14	14	19	14	0	0	./.	4	3	7	4	30	23	35	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093349	19	21650915	GC	G	480	PASS	AC010615.1	ENST00000504832	r.?	-	-	Del	upstream	D	21650915	21650924	1	21	433.561	-	-	8	1	1	AC010615.1|ENST00000504832|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC010615.1|ENST00000504832|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	10	13	10	13	0	0	./.	6	2	7	2	22	21	22	21	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093363	19	21672039	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	21672039	21672049	1	15	318.397	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	4	2	7	6	34	32	36	32	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093639	19	22025330	GA	G	269	PASS	ZNF43	ENST00000397148	r.?	-	-	Del	intronic	D	22025330	22025338	1	12	270.75	-	-	7	1	1	ZNF43|ENST00000397148|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF43|ENST00000397148|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	4	27	17	27	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093640	19	22027283	CA	C	300	PASS	ZNF43	ENST00000397148	r.?	-	-	Del	intronic	D	22027283	22027293	1	12	271.352	-	-	9	1	1	ZNF43|ENST00000397148|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF43|ENST00000397148|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	13	2	13	0	0	./.	2	3	2	5	20	25	20	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093675	19	22125933	GA	G	300	PASS	-	-	-	-	-	Del	-	D	22125933	22125941	1	12	271.352	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	2	3	4	14	31	14	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760093977	19	22777084	AC	A	300	PASS	ENSG00000235276	ENST00000421840	r.?	-	-	Del	upstream	D	22777084	22777086	1	12	267.137	-	-	1	1	1	ENSG00000235276|ENST00000421840|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000235276|ENST00000421840|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	12	5	12	0	0	./.	2	3	2	3	4	11	4	11	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094129	19	23129923	AT	A	360	PASS	-	-	-	-	-	Del	-	D	23129923	23129930	1	15	325.02	-	-	6	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	5	5	20	32	20	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094142	19	23153749	AG	A	480	PASS	-	-	-	-	-	Del	-	D	23153749	23153751	1	25	431.754	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	4	4	4	16	21	16	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094169	19	23189967	TC	T	300	PASS	-	-	-	-	-	Del	-	D	23189967	23189969	1	10	269.546	-	-	1	1	-	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	1	4	4	5	25	41	25	41	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094239	19	23335708	AT	A	300	PASS	ZNF730	ENST00000327867	r.?	-	-	Del	downstream	D	23335708	23335718	1	12	271.352	-	-	9	1	1	ZNF730|ENST00000327867|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF730|ENST00000327867|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	9	18	9	0	0	./.	3	2	4	3	20	21	20	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094276	19	23414544	CT	C	300	PASS	ZNF724P	ENST00000418100	r.?	-	-	Del	intronic	D	23414544	23414554	1	12	270.148	-	-	9	1	1	ZNF724P|ENST00000418100|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF724P|ENST00000418100|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	6	2	19	2	19	2	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094313	19	23478524	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	23478524	23478532	1	15	320.806	-	-	7	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	4	3	17	25	17	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094483	19	23828278	AT	A	598	PASS	-	-	-	-	-	Del	-	D	23828278	23828288	1	30	595.168	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	9	5	9	20	28	20	28	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094489	19	23831812	GA	G	480	PASS	ZNF675	CCDS32981.1	r.?	-	-	Del	downstream	D	23831812	23831820	1	16	434.163	-	-	7	1	1	ZNF675|CCDS32981.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF675|CCDS32981.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	7	16	7	0	0	./.	7	1	11	4	25	26	25	26	11	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094561	19	23902803	AT	A	269	PASS	-	-	-	-	-	Del	-	D	23902803	23902806	1	10	270.75	-	-	2	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	4	2	23	24	23	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094734	19	24103158	CT	C	300	PASS	ZNF726	ENST00000322487	r.?	-	-	Del	intronic	D	24103158	24103168	1	12	271.352	-	-	9	1	1	ZNF726|ENST00000322487|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF726|ENST00000322487|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	3	2	3	4	17	26	17	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094746	19	24123308	GT	G	480	PASS	AC011503.1	ENST00000300996	r.?	-	-	Del	intronic	D	24123308	24123317	1	21	428.744	-	-	8	1	1	AC011503.1|ENST00000300996|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC011503.1|ENST00000300996|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	6	2	6	2	21	21	21	21	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094766	19	24207907	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	24207907	24207915	1	7	322.01	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	6	0	6	0	26	8	26	8	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094820	19	24318637	CT	C	569	PASS	-	-	-	-	-	Del	-	D	24318637	24318647	1	35	542.703	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	6	4	10	27	23	27	23	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094837	19	24402884	CT	C	360	PASS	-	-	-	-	-	Del	-	D	24402884	24402893	1	15	325.622	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	6	3	39	28	39	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760094842	19	24422918	CA	C	300	PASS	-	-	-	-	-	Del	-	D	24422918	24422928	1	12	271.352	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	5	3	31	24	31	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095143	19	28188805	CT	C	337	PASS	-	-	-	-	-	Del	-	D	28188805	28188815	1	16	324.418	-	-	9	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	3	3	4	4	21	29	21	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095158	19	28258106	TG	T	300	PASS	-	-	-	-	-	Del	-	D	28258106	28258111	1	10	271.352	-	-	4	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	4	1	4	1	17	15	17	15	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095235	19	28461266	AT	A	300	PASS	-	-	-	-	-	Del	-	D	28461266	28461276	1	12	271.352	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	4	2	19	21	19	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095294	19	28654994	GT	G	540	PASS	-	-	-	-	-	Del	-	D	28654994	28655004	1	24	487.831	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	7	2	8	2	23	21	23	21	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095348	19	28808063	CCT	C	509	PASS	-	-	-	-	-	Del	-	D	28808063	28808074	2	28	487.229	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	6	5	7	38	28	38	28	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095376	19	28877619	CAG	C	443	PASS	-	-	-	-	-	Del	-	D	28877619	28877634	2	25	431.755	-	-	7	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	4	4	5	6	27	38	27	38	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095522	19	29273981	GT	G	300	PASS	-	-	-	-	-	Del	-	D	29273981	29273987	1	10	271.352	-	-	5	1	1	-	-	./.	0	0	0	0	13	3	13	3	0	0	./.	4	1	4	2	17	15	17	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095597	19	29457226	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	29457226	29457236	1	10	268.341	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	1	6	3	32	22	32	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095646	19	29632171	CT	C	300	PASS	-	-	-	-	-	Del	-	D	29632171	29632180	1	12	271.352	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	3	2	27	25	27	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095872	19	30239918	C	CA	460	PASS	-	-	-	-	-	Ins	-	I	30239918	30239919	1	28	478.198	-	-	0	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	6	3	8	4	25	25	25	25	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760095962	19	30417258	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	30417258	30417264	1	15	320.204	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	5	3	31	20	31	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096128	19	30844433	GC	G	300	PASS	-	-	-	-	-	Del	-	D	30844433	30844442	1	12	271.352	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	2	21	15	21	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096203	19	31099240	AT	A	360	PASS	-	-	-	-	-	Del	-	D	31099240	31099250	1	16	325.622	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	4	32	23	32	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096234	19	31182653	GA	G	540	PASS	-	-	-	-	-	Del	-	D	31182653	31182663	1	28	488.433	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	3	6	3	28	25	28	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096298	19	31418477	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	31418477	31418480	1	24	423.928	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	5	5	6	36	22	36	22	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096328	19	31528810	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	31528810	31528820	1	12	265.933	-	-	9	1	1	-	-	./.	0	0	0	0	9	23	9	23	0	0	./.	3	2	4	4	14	34	14	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096528	19	32292002	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	32292002	32292009	1	20	375.678	-	-	6	1	1	-	-	./.	0	0	0	0	18	14	19	14	0	0	./.	3	4	5	4	25	17	25	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096544	19	32394883	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	32394883	32394889	1	16	322.01	-	-	5	1	1	-	-	./.	0	0	0	0	7	14	7	15	0	0	./.	3	3	5	5	29	34	29	34	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096826	19	33134672	CT	C	360	PASS	ANKRD27	CCDS32986.1	r.?	-	-	Del	intronic	D	33134672	33134682	1	15	325.622	-	-	9	1	1	ANKRD27|CCDS32986.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD27|CCDS32986.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	4	6	32	41	32	41	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760096940	19	33378132	GT	G	300	PASS	CCDC123	CCDS32987.1	r.?	-	-	Del	intronic	D	33378132	33378142	1	12	271.352	-	-	9	1	1	CCDC123|CCDS32987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC123|CCDS32987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	5	4	22	18	22	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097007	19	33502012	CT	C	360	PASS	RHPN2	CCDS12427.1	r.?	-	-	Del	intronic	D	33502012	33502020	1	15	325.622	-	-	7	1	1	RHPN2|CCDS12427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RHPN2|CCDS12427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	6	4	23	24	23	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097044	19	33565957	TA	T	420	PASS	-	-	-	-	-	Del	-	D	33565957	33565967	1	14	378.688	-	-	9	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	1	6	5	9	29	21	29	21	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097184	19	33884490	CG	C	449	PASS	PEPD	CCDS42544.1	r.?	-	-	Del	intronic	D	33884490	33884497	1	24	425.734	-	-	6	1	1	PEPD|CCDS42544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEPD|CCDS42544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	5	3	5	5	28	18	28	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097229	19	34064288	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	34064288	34064295	1	18	375.678	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	2	6	3	19	23	19	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097422	19	34599251	GA	G	420	PASS	-	-	-	-	-	Del	-	D	34599251	34599261	1	18	379.892	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	5	2	6	2	31	19	31	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097463	19	34687877	AT	A	360	PASS	LSM14A	CCDS46040.1	r.?	-	-	Del	intronic	D	34687877	34687887	1	16	325.622	-	-	9	1	1	LSM14A|CCDS46040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LSM14A|CCDS46040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	4	4	33	16	33	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097498	19	34758270	AT	A	360	PASS	KIAA0355	CCDS12436.1	r.?	-	-	Del	intronic	D	34758270	34758280	1	15	325.622	-	-	9	1	1	KIAA0355|CCDS12436.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA0355|CCDS12436.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	3	5	13	27	13	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097604	19	34986137	C	CA	300	PASS	WTIP	ENST00000270288	r.?	-	-	Ins	intronic	I	34986137	34986146	1	6	267.137	-	-	8	1	1	WTIP|ENST00000270288|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WTIP|ENST00000270288|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	0	5	3	5	33	39	33	40	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760097715	19	35343097	CT	C	297	PASS	-	-	-	-	-	Del	-	D	35343097	35343107	1	12	270.75	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	3	4	15	18	15	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098003	19	36008290	CA	C	300	PASS	DMKN	CCDS12463.1	r.?	-	-	Del	upstream	D	36008290	36008298	1	12	271.352	-	-	7	1	1	DMKN|CCDS12463.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DMKN|CCDS12463.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	3	3	16	32	16	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098251	19	36617321	CA	C	300	PASS	TBCB	CCDS12488.1	r.?	-	-	Del	downstream	D	36617321	36617331	1	10	271.352	-	-	9	1	1	TBCB|CCDS12488.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	TBCB|CCDS12488.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	5	11	5	0	0	./.	1	4	3	6	19	26	19	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098282	19	36678706	A	AT	420	PASS	ZNF565	CCDS12491.1	r.?	-	-	Ins	intronic	I	36678706	36678713	1	14	375.678	-	-	6	1	1	ZNF565|CCDS12491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF565|CCDS12491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	13	3	13	0	0	./.	1	6	2	8	3	27	3	28	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098575	19	37210374	G	GA	360	PASS	ZNF567	CCDS12495.1	r.837_838insa	c.655_656insA	p.H222fs*5	Ins	frameshift	I	37210374	37210383	1	15	322.01	-	-	8	1	1	ZNF567|CCDS12495.1|r.837_838insa|c.655_656insA|p.H222fs*5|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ZNF567|CCDS12495.1|r.837_838insa|c.655_656insA|p.H222fs*5|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	4	2	23	19	23	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098684	19	37521902	GC	G	420	PASS	-	-	-	-	-	Del	-	D	37521902	37521910	1	18	379.892	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	5	5	5	37	28	37	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098691	19	37566351	AAG	A	300	PASS	ZNF420	CCDS12498.1	r.?	-	-	Del	upstream	D	37566351	37566364	2	10	271.352	-	-	6	1	1	ZNF420|CCDS12498.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF420|CCDS12498.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	5	1	12	4	12	4	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098722	19	37681472	G	GT	300	PASS	ENSG00000245680	ENST00000501522	r.?	-	-	Ins	intronic	I	37681472	37681481	1	10	267.739	-	-	8	1	-	ENSG00000245680|ENST00000501522|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000245680|ENST00000501522|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	10	26	11	0	0	./.	1	4	4	5	29	23	29	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098736	19	37719164	GT	G	360	PASS	ZNF383	CCDS12501.1	r.?	-	-	Del	intronic	D	37719164	37719171	1	7	325.622	-	-	6	1	1	ZNF383|CCDS12501.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF383|CCDS12501.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	0	6	0	6	0	29	0	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098809	19	37936336	CT	C	420	PASS	ZNF569	CCDS12503.1	r.?	-	-	Del	intronic	D	37936336	37936341	1	20	379.892	-	-	4	1	1	ZNF569|CCDS12503.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF569|CCDS12503.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	4	3	5	3	25	33	25	33	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098882	19	38137673	GT	G	480	PASS	ZFP30	CCDS33005.1	r.?	-	-	Del	intronic	D	38137673	38137681	1	24	434.163	-	-	7	1	-	ZFP30|CCDS33005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFP30|CCDS33005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	5	3	7	13	17	13	17	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760098952	19	38277254	TA	T	540	PASS	ZNF573	ENST00000392138	r.?	-	-	Del	intronic	D	38277254	38277264	1	30	488.433	-	-	9	1	1	ZNF573|ENST00000392138|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF573|ENST00000392138|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	5	7	6	34	21	34	21	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099176	19	38797330	AT	A	300	PASS	YIF1B	CCDS12512.1	r.?	-	-	Del	intronic	D	38797330	38797340	1	6	271.352	-	-	9	1	1	YIF1B|CCDS12512.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YIF1B|CCDS12512.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	0	5	4	7	35	23	35	23	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099227	19	38921420	TG	T	300	PASS	RYR1	CCDS33011.1	r.?	-	-	Del	upstream	D	38921420	38921426	1	6	271.352	-	-	5	1	1	RYR1|CCDS33011.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RYR1|CCDS33011.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	10	8	10	0	0	./.	5	0	5	0	19	16	19	16	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099311	19	39099273	TA	T	540	PASS	MAP4K1	CCDS42564.1	r.?	-	-	Del	intronic	D	39099273	39099283	1	24	488.433	-	-	9	1	1	MAP4K1|CCDS42564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP4K1|CCDS42564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	7	5	8	20	30	20	30	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099343	19	39217948	A	AG	540	PASS	ACTN4	CCDS12518.1	r.?	-	-	Ins	intronic	I	39217948	39217954	1	30	480.004	-	-	5	1	1	ACTN4|CCDS12518.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACTN4|CCDS12518.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	4	5	4	6	22	35	22	35	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099392	19	39308327	G	GA	480	PASS	LGALS4	CCDS12521.1	r.?	-	-	Ins	upstream	I	39308327	39308336	1	24	428.142	-	-	8	1	1	LGALS4|CCDS12521.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ECH1|CCDS33014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	8	13	0	0	./.	3	5	4	6	21	35	21	36	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099407	19	39343653	AC	A	360	PASS	HNRNPL	CCDS33015.1	r.?	-	-	Del	upstream	D	39343653	39343659	1	16	325.622	-	-	5	1	1	HNRNPL|CCDS33015.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HNRNPL|CCDS33015.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	8	16	8	0	0	./.	3	3	6	4	38	34	38	34	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099412	19	39349664	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	39349664	39349680	2	12	270.75	-	-	7	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	4	3	31	32	31	32	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760099789	19	40043195	CT	C	600	PASS	-	-	-	-	-	Del	-	D	40043195	40043204	1	27	542.703	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	8	2	9	21	38	21	38	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760100167	19	41076368	T	TC	300	PASS	SPTBN4	CCDS12559.1	r.7155_7156insc	c.7053_7054insC	p.G2354fs*8	Ins	frameshift	I	41076368	41076374	1	12	268.341	-	-	5	1	1	SPTBN4|CCDS12559.1|r.7155_7156insc|c.7053_7054insC|p.G2354fs*8|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	SPTBN4|CCDS12559.1|r.7155_7156insc|c.7053_7054insC|p.G2354fs*8|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	11	5	11	5	0	0	./.	3	2	4	3	26	24	26	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760100190	19	41124903	GT	G	540	PASS	LTBP4	ENST00000308370	r.?	-	-	Del	intronic	D	41124903	41124913	1	30	488.433	-	-	9	1	1	LTBP4|ENST00000308370|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LTBP4|ENST00000308370|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	5	6	9	22	33	22	33	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760100407	19	41583071	CT	C	600	PASS	-	-	-	-	-	Del	-	D	41583071	41583080	1	32	542.101	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	7	3	9	7	38	29	38	29	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760100502	19	41760817	T	TA	360	PASS	AXL	CCDS12575.1	r.?	-	-	Ins	intronic	I	41760817	41760827	1	15	320.806	-	-	9	1	1	AXL|CCDS12575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AXL|CCDS12575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	5	3	26	27	26	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760100527	19	41808817	AG	A	300	PASS	HNRNPUL1	CCDS12576.1	r.2225delG	c.1936delG	p.G647fs*268	Del	frameshift	D	41808817	41808823	1	10	271.352	-	-	5	1	1	HNRNPUL1|CCDS12576.1|r.2225delG|c.1936delG|p.G647fs*268|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HNRNPUL1|CCDS12576.1|r.2225delG|c.1936delG|p.G647fs*268|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	4	9	4	0	0	./.	4	1	5	3	23	24	23	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760100760	19	42562047	C	CA	420	PASS	GRIK5	CCDS12595.1	r.?	-	-	Ins	intronic	I	42562047	42562050	1	20	372.668	-	-	2	1	1	GRIK5|CCDS12595.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIK5|CCDS12595.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	3	4	20	30	20	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101025	19	43549116	GT	G	269	PASS	PSG1	ENST00000449000	r.?	-	-	Del	intronic	D	43549116	43549126	1	12	268.943	-	-	9	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	3	2	5	4	11	7	11	7	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101050	19	43660653	AT	A	269	PASS	PSG1	ENST00000449000	r.?	-	-	Del	intronic	D	43660653	43660662	1	10	271.352	-	-	8	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	4	1	6	5	16	12	16	12	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101490	19	44728163	AT	A	312	PASS	ZNF227	CCDS12636.1	r.?	-	-	Del	intronic	D	44728163	44728168	1	18	379.892	-	-	4	1	1	ZNF227|CCDS12636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF227|CCDS12636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	2	5	3	5	29	26	29	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101520	19	44803173	A	AT	420	PASS	ZNF235	CCDS33048.1	r.?	-	-	Ins	intronic	I	44803173	44803183	1	14	375.678	-	-	9	1	1	ZNF235|CCDS33048.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF235|CCDS33048.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	6	1	7	3	24	18	24	18	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101577	19	44943636	CT	C	540	PASS	ZNF229	CCDS42574.1	r.?	-	-	Del	intronic	D	44943636	44943645	1	30	488.433	-	-	8	1	1	ZNF229|CCDS42574.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF229|CCDS42574.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	4	7	5	30	28	30	28	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101714	19	45188344	GC	G	420	PASS	CEACAM19	CCDS46108.1	r.?	-	-	Del	downstream	D	45188344	45188351	1	20	378.086	-	-	6	1	1	CEACAM19|CCDS46108.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CEACAM19|CCDS46108.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	13	7	13	0	0	./.	3	4	4	6	28	30	28	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101765	19	45292499	ACTGT	A	418	PASS	CBLC	CCDS12643.1	r.?	-	-	Del	intronic	D	45292499	45292508	4	24	432.357	-	-	2	1	1	CBLC|CCDS12643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CBLC|CCDS12643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	16	4	16	0	0	./.	3	5	3	5	28	29	28	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101858	19	45470088	ATC	A	360	PASS	CLPTM1	CCDS12651.1	r.?	-	-	Del	intronic	D	45470088	45470108	2	16	325.622	-	-	9	1	1	CLPTM1|CCDS12651.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLPTM1|CCDS12651.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	3	3	3	3	26	27	26	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760101992	19	45812330	CA	C	300	PASS	MARK4	CCDS12658.1	r.?	-	-	Del	downstream	D	45812330	45812340	1	12	271.352	-	-	9	1	1	MARK4|CCDS12658.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CKM|CCDS12659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	3	5	22	29	22	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102091	19	45987058	G	GT	360	PASS	RTN2	CCDS12665.1	r.?	-	-	Ins	downstream	I	45987058	45987065	1	15	322.01	-	-	6	1	-	RTN2|CCDS12665.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PPM1N|ENST00000401705|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	17	7	17	7	0	0	./.	2	4	2	4	25	33	25	35	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102276	19	46309101	A	AT	480	PASS	RSPH6A	CCDS12675.1	r.?	-	-	Ins	intronic	I	46309101	46309107	1	24	429.346	-	-	5	1	1	RSPH6A|CCDS12675.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RSPH6A|CCDS12675.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	5	3	6	4	24	22	24	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102316	19	46390943	TA	T	480	PASS	IRF2BP1	CCDS12678.1	r.?	-	-	Del	upstream	D	46390943	46390952	1	24	434.163	-	-	8	1	1	IRF2BP1|CCDS12678.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	IRF2BP1|CCDS12678.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	6	5	29	10	29	10	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102449	19	46757740	TA	T	480	PASS	-	-	-	-	-	Del	-	D	46757740	46757749	1	25	431.754	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	4	5	6	31	31	31	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102615	19	47015096	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	47015096	47015116	2	10	268.341	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	4	3	5	28	28	28	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102659	19	47119068	AT	A	360	PASS	PTGIR	CCDS12686.1	r.?	-	-	Del	downstream	D	47119068	47119078	1	15	325.622	-	-	9	1	1	PTGIR|CCDS12686.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PTGIR|CCDS12686.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	8	7	8	0	0	./.	4	2	5	3	27	27	27	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102730	19	47274388	AG	A	420	PASS	SLC1A5	CCDS12692.1	r.?	-	-	Del	downstream	D	47274388	47274394	1	18	370.862	-	-	5	1	1	SLC1A5|CCDS12692.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC1A5|CCDS12692.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	4	16	4	16	0	0	./.	2	5	4	7	34	28	34	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102757	19	47323116	CA	C	360	PASS	-	-	-	-	-	Del	-	D	47323116	47323126	1	15	323.816	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	4	18	19	18	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102786	19	47366924	TC	T	300	PASS	-	-	-	-	-	Del	-	D	47366924	47366932	1	12	262.321	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	5	22	22	22	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760102796	19	47385509	AC	A	420	PASS	-	-	-	-	-	Del	-	D	47385509	47385517	1	8	378.086	-	-	7	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	0	7	0	8	6	37	6	37	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760103035	19	47831890	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	47831890	47831898	1	6	268.341	-	-	7	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	5	0	6	0	27	18	28	19	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760103692	19	49138981	CG	C	300	PASS	DBP	CCDS12728.1	r.793delC	c.405delC	p.G136fs*50	Del	frameshift	D	49138981	49138988	1	12	271.352	-	-	6	1	1	DBP|CCDS12728.1|r.793delC|c.405delC|p.G136fs*50|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	DBP|CCDS12728.1|r.793delC|c.405delC|p.G136fs*50|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	6	21	31	21	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760103868	19	49489041	GC	G	420	PASS	GYS1	CCDS12747.1	r.?	-	-	Del	intronic	D	49489041	49489048	1	14	378.086	-	-	6	1	1	GYS1|CCDS12747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GYS1|CCDS12747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	1	6	6	8	31	27	31	27	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760103966	19	49662743	G	GT	300	PASS	TRPM4	CCDS33073.1	r.?	-	-	Ins	intronic	I	49662743	49662750	1	12	267.739	-	-	6	1	1	TRPM4|CCDS33073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPM4|CCDS33073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	13	14	0	0	./.	2	3	3	3	25	32	25	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760103978	19	49686204	GC	G	300	PASS	TRPM4	CCDS33073.1	r.?	-	-	Del	intronic	D	49686204	49686212	1	12	269.546	-	-	7	1	1	TRPM4|CCDS33073.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM4|CCDS33073.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	3	2	4	3	31	26	31	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760103985	19	49699775	CG	C	300	PASS	TRPM4	CCDS33073.1	r.2362delG	c.2290delG	p.R766fs*15	Del	frameshift	D	49699775	49699782	1	12	271.352	-	-	6	1	1	TRPM4|CCDS33073.1|r.2362delG|c.2290delG|p.R766fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TRPM4|CCDS33073.1|r.2362delG|c.2290delG|p.R766fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	7	7	7	0	0	./.	3	2	3	3	28	31	28	31	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104064	19	49850472	T	TG	480	PASS	TEAD2	CCDS12761.1	r.974_975insc	c.883_884insC	p.H295fs*19	Ins	frameshift	I	49850472	49850481	1	25	419.111	-	-	8	1	1	TEAD2|CCDS12761.1|r.974_975insc|c.883_884insC|p.H295fs*19|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	TEAD2|CCDS12761.1|r.974_975insc|c.883_884insC|p.H295fs*19|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	6	16	6	16	0	0	./.	4	4	4	5	32	31	33	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104145	19	50006524	C	CA	360	PASS	ENSG00000142534	CCDS12769.1	r.?	-	-	Ins	downstream	I	50006524	50006534	1	16	318.999	-	-	9	1	1	ENSG00000142534|CCDS12769.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MIR150|ENST00000385048|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	6	7	6	7	0	0	./.	3	3	5	6	26	31	27	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104215	19	50138393	C	CT	420	PASS	RRAS	CCDS12774.1	r.?	-	-	Ins	downstream	I	50138393	50138403	1	14	375.678	-	-	9	1	1	RRAS|CCDS12774.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	RRAS|CCDS12774.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	9	10	9	10	0	0	./.	1	6	1	8	20	31	21	31	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104217	19	50149954	AC	A	360	PASS	SCAF1	CCDS33074.1	r.?	-	-	Del	intronic	D	50149954	50149959	1	15	325.622	-	-	4	1	1	SCAF1|CCDS33074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCAF1|CCDS33074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	5	3	36	21	36	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104285	19	50362507	T	TG	360	PASS	PTOV1	CCDS12782.1	r.?	-	-	Ins	intronic	I	50362507	50362516	1	16	318.999	-	-	8	1	1	PTOV1|CCDS12782.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTOV1|CCDS12782.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	3	3	3	4	21	36	21	36	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104604	19	51162875	A	AT	300	PASS	SHANK1	CCDS12799.1	r.?	-	-	Ins	downstream	I	51162875	51162883	1	12	267.137	-	-	7	1	1	SHANK1|CCDS12799.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SHANK1|CCDS12799.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	2	21	2	22	0	0	./.	3	2	3	5	13	31	13	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104671	19	51335242	GA	G	329	PASS	KLK15	CCDS12805.1	r.?	-	-	Del	upstream	D	51335242	51335246	1	15	323.214	-	-	3	1	1	KLK15|CCDS12805.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KLK15|CCDS12805.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	5	5	15	18	15	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104714	19	51445581	AC	A	329	PASS	KLK5	CCDS12810.1	r.?	-	-	Del	downstream	D	51445581	51445590	1	12	325.622	-	-	8	1	1	KLK5|CCDS12810.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KLK5|CCDS12810.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	4	9	4	0	0	./.	1	5	1	5	26	18	26	18	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104805	19	51716350	CA	C	300	PASS	-	-	-	-	-	Del	-	D	51716350	51716355	1	10	270.148	-	-	4	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	4	1	5	21	29	21	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760104940	19	52085988	CT	C	269	PASS	ZNF175	CCDS12837.1	r.?	-	-	Del	intronic	D	52085988	52085997	1	10	271.352	-	-	8	1	1	ZNF175|CCDS12837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF175|CCDS12837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	1	4	1	6	26	30	26	30	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105082	19	52489415	AC	A	360	PASS	ZNF615	CCDS12845.1	r.?	-	-	Del	intronic	D	52489415	52489422	1	12	325.622	-	-	6	1	1	ZNF615|CCDS12845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF615|CCDS12845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	1	7	1	25	8	25	8	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105170	19	52850946	AT	A	389	PASS	ZNF610	CCDS12851.1	r.?	-	-	Del	intronic	D	52850946	52850956	1	18	379.892	-	-	9	1	1	ZNF610|CCDS12851.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF610|CCDS12851.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	5	2	7	30	31	30	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105328	19	53094095	TTTTG	T	300	PASS	-	-	-	-	-	Del	-	D	53094095	53094111	4	6	271.352	-	-	3	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	0	5	0	6	9	29	9	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105431	19	53246184	CG	C	420	PASS	-	-	-	-	-	Del	-	D	53246184	53246192	1	20	377.484	-	-	7	1	1	-	-	./.	0	0	0	0	9	2	9	2	0	0	./.	4	3	5	4	24	21	24	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105433	19	53254315	C	CG	360	PASS	-	-	-	-	-	Ins	-	I	53254315	53254323	1	15	314.183	-	-	7	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	4	3	4	23	29	25	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105926	19	54179546	TA	T	480	PASS	MIR498	ENST00000385134	r.?	-	-	Del	downstream	D	54179546	54179556	1	16	431.152	-	-	9	1	1	MIR498|ENST00000385134|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	MIR519E|ENST00000385075|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	6	11	6	11	0	0	./.	1	7	2	10	28	28	28	28	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105935	19	54198646	GT	G	420	PASS	MIR523	ENST00000385281	r.?	-	-	Del	upstream	D	54198646	54198656	1	14	379.892	-	-	9	1	1	MIR523|ENST00000385281|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	MIR523|ENST00000385281|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	15	14	15	14	0	0	./.	1	6	4	7	15	37	15	37	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760105947	19	54215508	CA	C	480	PASS	MIR518C	ENST00000384822	r.?	-	-	Del	downstream	D	54215508	54215517	1	25	434.163	-	-	8	1	1	MIR518C|ENST00000384822|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	MIR519D|ENST00000385246|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	7	9	7	9	0	0	./.	4	4	5	4	34	25	34	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106015	19	54328871	CT	C	300	PASS	NLRP12	CCDS12864.1	r.?	-	-	Del	upstream	D	54328871	54328880	1	10	271.352	-	-	8	1	1	NLRP12|CCDS12864.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NLRP12|CCDS12864.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	4	9	4	0	0	./.	4	1	5	3	38	27	38	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106162	19	54615361	TA	T	300	PASS	PRPF31	CCDS12879.1	r.?	-	-	Del	upstream	D	54615361	54615371	1	12	271.352	-	-	9	1	1	PRPF31|CCDS12879.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TFPT|CCDS12878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	5	19	5	0	0	./.	2	3	4	4	26	26	26	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106172	19	54640283	C	CA	480	PASS	CNOT3	CCDS12880.1	r.?	-	-	Ins	upstream	I	54640283	54640289	1	25	425.132	-	-	5	1	1	CNOT3|CCDS12880.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CNOT3|CCDS12880.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	20	14	20	14	0	0	./.	4	4	4	5	32	24	32	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106250	19	54799396	AT	A	480	PASS	LILRA3	CCDS12887.1	r.?	-	-	Del	downstream	D	54799396	54799406	1	21	434.163	-	-	9	1	1	LILRA3|CCDS12887.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	LILRA3|ENST00000251375|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	6	2	8	18	23	18	23	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106251	19	54804855	CCT	C	360	PASS	LILRA3	CCDS12887.1	r.?	-	-	Del	upstream	D	54804855	54804858	2	16	325.622	-	-	1	1	1	LILRA3|CCDS12887.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	LILRA3|ENST00000391745|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	3	3	3	21	29	21	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106338	19	54972410	TTC	T	300	PASS	LENG8	CCDS12894.1	r.3185_3186delUC	c.?	p.?	Del	3'UTR variant	D	54972410	54972424	2	10	269.546	-	-	6	1	1	LENG8|CCDS12894.1|r.3185_3186delUC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	LENG8|ENST00000421200|r.113_114delUC|c.113_114delTC|p.L42fs*81|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	11	7	11	0	0	./.	1	4	1	6	15	28	15	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106388	19	55049765	AT	A	300	PASS	KIR3DX1	ENST00000335056	r.?	-	-	Del	intronic	D	55049765	55049771	1	12	270.75	-	-	5	1	1	KIR3DX1|ENST00000335056|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIR3DX1|ENST00000335056|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	2	4	2	24	16	24	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106418	19	55161596	AT	A	420	PASS	LILRB4	ENST00000420271	r.?	-	-	Del	intronic	D	55161596	55161605	1	18	378.688	-	-	8	1	1	LILRB4|ENST00000420271|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LILRB4|ENST00000420271|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	5	2	7	23	28	23	28	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106420	19	55170854	TA	T	480	PASS	LILRB4	CCDS12902.1	r.?	-	-	Del	upstream	D	55170854	55170864	1	21	434.163	-	-	9	1	1	LILRB4|CCDS12902.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LILRB4|ENST00000420271|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	6	2	7	17	22	17	22	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106761	19	55614619	TA	T	300	PASS	PPP1R12C	CCDS12916.1	r.?	-	-	Del	intronic	D	55614619	55614628	1	6	269.546	-	-	8	1	1	PPP1R12C|CCDS12916.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R12C|CCDS12916.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	0	6	0	21	18	21	18	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106851	19	55855915	ATCTT	A	420	PASS	SUV420H2	CCDS12922.1	r.?	-	-	Del	intronic	D	55855915	55855924	4	18	379.892	-	-	2	1	1	SUV420H2|CCDS12922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUV420H2|CCDS12922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	2	5	2	5	13	25	13	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106960	19	56077195	AG	A	360	PASS	-	-	-	-	-	Del	-	D	56077195	56077202	1	15	325.02	-	-	6	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	4	2	5	2	27	15	27	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106970	19	56110254	AC	A	420	PASS	FIZ1	CCDS12928.1	r.?	-	-	Del	intronic	D	56110254	56110261	1	20	379.892	-	-	6	1	1	FIZ1|CCDS12928.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FIZ1|CCDS12928.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	4	4	17	26	17	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760106990	19	56166989	TG	T	300	PASS	U2AF2	CCDS12933.1	r.?	-	-	Del	intronic	D	56166989	56166997	1	12	270.75	-	-	7	1	1	U2AF2|CCDS12933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	U2AF2|CCDS12933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	4	3	25	21	25	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107120	19	56481501	CA	C	420	PASS	NLRP8	CCDS12937.1	r.?	-	-	Del	intronic	D	56481501	56481507	1	20	379.892	-	-	5	1	1	NLRP8|CCDS12937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLRP8|CCDS12937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	4	3	5	19	27	19	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107211	19	56641072	CA	C	315	PASS	-	-	-	-	-	Del	-	D	56641072	56641080	1	16	325.622	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	4	6	29	25	29	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107245	19	56721740	TG	T	360	PASS	ZSCAN5C	ENST00000376267	r.?	-	-	Del	downstream	D	56721740	56721749	1	15	314.785	-	-	8	1	1	ZSCAN5C|ENST00000376267|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZSCAN5C|ENST00000376267|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	4	10	4	10	0	0	./.	2	4	3	5	26	18	26	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107330	19	56958959	TA	T	360	PASS	ZNF667	CCDS12944.1	r.?	-	-	Del	intronic	D	56958959	56958969	1	15	325.622	-	-	9	1	1	ZNF667|CCDS12944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF667|CCDS12944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	7	2	26	22	26	22	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107375	19	57061633	AG	A	480	PASS	ZFP28	CCDS12946.1	r.?	-	-	Del	intronic	D	57061633	57061639	1	24	429.948	-	-	5	1	1	ZFP28|CCDS12946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFP28|CCDS12946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	7	4	30	31	30	31	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107615	19	57624186	GT	G	600	PASS	-	-	-	-	-	Del	-	D	57624186	57624195	1	27	542.703	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	8	2	9	4	31	22	31	22	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107671	19	57771527	G	GAC	300	PASS	ZNF805	CCDS46207.1	r.7547_7548insac	c.?	p.?	Ins	3'UTR variant	I	57771527	57771540	2	12	265.331	-	-	6	1	1	ZNF805|CCDS46207.1|r.7547_7548insac|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ZNF805|CCDS46207.1|r.7547_7548insac|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	4	3	37	23	39	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107716	19	57855345	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	57855345	57855352	1	6	268.341	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	0	5	0	5	15	26	15	26	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107731	19	57926022	AG	A	300	PASS	ZNF17	CCDS42636.1	r.?	-	-	Del	intronic	D	57926022	57926029	1	12	271.352	-	-	6	1	1	ZNF17|CCDS42636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF17|CCDS42636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	3	6	21	30	21	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107789	19	58065545	CA	C	780	PASS	ENSG00000251369	ENST00000506609	r.?	-	-	Del	intronic	D	58065545	58065555	1	56	705.515	-	-	9	1	1	ENSG00000251369|ENST00000506609|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000251369|ENST00000506609|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	7	6	7	6	35	30	35	30	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760107949	19	58450044	CA	C	780	PASS	ZNF418	CCDS42642.1	r.?	-	-	Del	upstream	D	58450044	58450054	1	56	704.912	-	-	9	1	1	ZNF418|CCDS42642.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AC010326.3|ENST00000501768|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	6	7	6	9	31	30	31	30	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108277	2	43829	CT	C	540	PASS	FAM110C	CCDS42645.1	r.?	-	-	Del	intronic	D	43829	43838	1	28	483.951	-	-	8	1	1	FAM110C|CCDS42645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM110C|CCDS42645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	6	3	7	3	33	18	33	18	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108458	2	660688	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	660688	660690	1	15	319.423	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	4	3	5	23	30	23	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108687	2	1438881	AT	A	277	PASS	TPO	CCDS1643.1	r.?	-	-	Del	intronic	D	1438881	1438887	1	12	268.594	-	-	5	1	1	TPO|CCDS1643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPO|CCDS1643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	3	2	4	3	27	29	27	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108768	2	1685479	AG	A	509	PASS	PXDN	CCDS46221.1	r.?	-	-	Del	intronic	D	1685479	1685485	1	30	484.553	-	-	5	1	1	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	5	5	5	22	23	22	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108769	2	1688246	GA	G	420	PASS	PXDN	CCDS46221.1	r.?	-	-	Del	intronic	D	1688246	1688253	1	20	376.874	-	-	6	1	1	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	3	5	3	33	14	33	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108870	2	2053936	CA	C	540	PASS	MYT1L	CCDS46222.1	r.?	-	-	Del	intronic	D	2053936	2053945	1	10	483.349	-	-	8	1	1	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	9	0	10	0	34	3	34	3	10	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108871	2	2079018	AT	A	360	PASS	MYT1L	CCDS46222.1	r.?	-	-	Del	intronic	D	2079018	2079024	1	15	323.035	-	-	5	1	1	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	5	3	23	22	23	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760108910	2	2337335	TA	T	300	PASS	MYT1L	CCDS46222.1	r.?	-	-	Del	upstream	D	2337335	2337345	1	10	268.594	-	-	9	1	1	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	1	5	6	24	6	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760109074	2	2972596	TA	T	300	PASS	-	-	-	-	-	Del	-	D	2972596	2972603	1	10	267.992	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	1	4	2	4	14	18	14	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760109320	2	3831928	CT	C	300	PASS	-	-	-	-	-	Del	-	D	3831928	3831936	1	6	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	0	5	0	5	0	24	0	24	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760109501	2	4394687	TA	T	300	PASS	-	-	-	-	-	Del	-	D	4394687	4394693	1	12	265.584	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	4	25	21	25	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760109896	2	5715815	TC	T	269	PASS	-	-	-	-	-	Del	-	D	5715815	5715818	1	6	269.196	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	0	5	0	6	0	24	0	24	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760109983	2	5916073	CA	C	360	PASS	-	-	-	-	-	Del	-	D	5916073	5916083	1	7	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	0	6	0	6	17	35	17	35	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760109986	2	5925831	TC	T	300	PASS	-	-	-	-	-	Del	-	D	5925831	5925839	1	10	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	1	5	2	35	30	35	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110046	2	6182654	GA	G	360	PASS	-	-	-	-	-	Del	-	D	6182654	6182664	1	12	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	31	11	31	11	0	0	./.	5	1	5	2	18	12	18	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110073	2	6315487	CA	C	600	PASS	-	-	-	-	-	Del	-	D	6315487	6315497	1	35	538.392	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	4	6	5	24	41	24	41	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110099	2	6398740	GT	G	420	PASS	-	-	-	-	-	Del	-	D	6398740	6398749	1	18	375.67	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	5	4	5	18	32	18	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110140	2	6511941	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	6511941	6511948	1	18	372.058	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	5	3	5	18	24	18	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110253	2	6789232	CA	C	300	PASS	-	-	-	-	-	Del	-	D	6789232	6789241	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	2	3	4	38	27	38	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110272	2	6849676	CT	C	300	PASS	-	-	-	-	-	Del	-	D	6849676	6849686	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	3	2	5	15	38	15	38	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110462	2	7550007	CA	C	300	PASS	ENSG00000234603	ENST00000441133	r.?	-	-	Del	intronic	D	7550007	7550016	1	10	269.196	-	-	8	1	1	ENSG00000234603|ENST00000441133|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000234603|ENST00000441133|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	3	4	21	29	21	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110591	2	8058124	AG	A	360	PASS	-	-	-	-	-	Del	-	D	8058124	8058132	1	15	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	8	2	21	32	21	32	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110625	2	8183194	CG	C	300	PASS	-	-	-	-	-	Del	-	D	8183194	8183201	1	6	268.594	-	-	6	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	0	5	1	7	25	28	25	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110648	2	8245388	AT	A	300	PASS	-	-	-	-	-	Del	-	D	8245388	8245394	1	10	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	3	5	35	26	35	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760110755	2	8682515	GA	G	300	PASS	-	-	-	-	-	Del	-	D	8682515	8682525	1	12	267.992	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	2	6	31	29	31	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111004	2	9443650	GGA	G	360	PASS	ASAP2	CCDS1661.1	r.?	-	-	Del	intronic	D	9443650	9443660	2	15	321.831	-	-	4	1	1	ASAP2|CCDS1661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASAP2|CCDS1661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	4	2	5	3	30	25	30	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111079	2	9635850	A	AG	360	PASS	ADAM17	CCDS1665.1	r.?	-	-	Ins	intronic	I	9635850	9635851	1	15	317.015	-	-	0	1	1	ADAM17|CCDS1665.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM17|CCDS1665.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	10	2	10	0	0	./.	2	4	2	6	14	20	14	20	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111095	2	9668868	GA	G	480	PASS	ADAM17	CCDS1665.1	r.?	-	-	Del	intronic	D	9668868	9668876	1	24	427.101	-	-	7	1	1	ADAM17|CCDS1665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM17|CCDS1665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	3	6	5	43	33	43	33	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111357	2	10228045	C	CT	480	PASS	ENSG00000233502	ENST00000425235	r.?	-	-	Ins	downstream	I	10228045	10228053	1	21	425.897	-	-	7	1	1	ENSG00000233502|ENST00000425235|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000233502|ENST00000425235|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	10	11	10	0	0	./.	6	2	7	5	25	24	25	24	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111393	2	10315725	AT	A	300	PASS	C2orf48	CCDS1670.1	r.?	-	-	Del	intronic	D	10315725	10315730	1	12	269.196	-	-	4	1	1	C2orf48|CCDS1670.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf48|CCDS1670.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	4	2	17	17	17	17	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111468	2	10472904	AG	A	420	PASS	HPCAL1	CCDS1671.1	r.?	-	-	Del	intronic	D	10472904	10472912	1	18	376.874	-	-	7	1	1	HPCAL1|CCDS1671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HPCAL1|CCDS1671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	4	6	25	22	25	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111479	2	10508449	GGT	G	360	PASS	HPCAL1	CCDS1671.1	r.?	-	-	Del	intronic	D	10508449	10508459	2	15	323.035	-	-	4	1	-	HPCAL1|CCDS1671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HPCAL1|CCDS1671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	4	4	15	25	15	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111738	2	10969668	TG	T	300	PASS	PDIA6	ENST00000404371	r.?	-	-	Del	intronic	D	10969668	10969675	1	6	269.196	-	-	6	1	1	PDIA6|ENST00000404371|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PDIA6|ENST00000404371|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	5	0	6	0	15	23	15	23	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111885	2	11402385	C	CA	300	PASS	ROCK2	CCDS42654.1	r.?	-	-	Ins	intronic	I	11402385	11402393	1	12	266.186	-	-	7	1	1	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	2	3	2	3	12	22	12	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760111897	2	11431601	AG	A	300	PASS	ROCK2	CCDS42654.1	r.?	-	-	Del	intronic	D	11431601	11431607	1	12	256.553	-	-	5	1	1	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	4	3	28	21	28	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112061	2	11812956	AT	A	300	PASS	NTSR2	CCDS1681.1	r.?	-	-	Del	upstream	D	11812956	11812962	1	12	269.196	-	-	5	1	1	NTSR2|CCDS1681.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NTSR2|CCDS1681.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	3	3	22	15	22	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112133	2	12085638	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	12085638	12085644	1	21	424.693	-	-	5	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	6	2	6	2	27	25	27	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112279	2	12547394	AT	A	360	PASS	-	-	-	-	-	Del	-	D	12547394	12547404	1	15	321.229	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	4	2	4	3	35	17	35	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112387	2	12861054	CT	C	360	PASS	TRIB2	CCDS1683.1	r.?	-	-	Del	intronic	D	12861054	12861064	1	15	323.035	-	-	9	1	1	TRIB2|CCDS1683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIB2|CCDS1683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	5	5	26	29	26	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112626	2	13870023	CT	C	300	PASS	-	-	-	-	-	Del	-	D	13870023	13870032	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	2	3	3	4	27	19	27	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112666	2	13994773	CA	C	300	PASS	-	-	-	-	-	Del	-	D	13994773	13994781	1	12	267.992	-	-	7	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	3	2	3	3	32	23	32	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760112957	2	14916731	CA	C	360	PASS	-	-	-	-	-	Del	-	D	14916731	14916739	1	7	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	0	6	3	10	21	36	21	36	3	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113072	2	15389133	AC	A	312	PASS	NBAS	CCDS1685.1	r.?	-	-	Del	intronic	D	15389133	15389135	1	15	321.831	-	-	1	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	4	6	37	24	37	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113125	2	15561182	G	GT	360	PASS	NBAS	CCDS1685.1	r.?	-	-	Ins	intronic	I	15561182	15561190	1	15	319.423	-	-	7	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	21	8	21	0	0	./.	4	2	4	4	19	39	20	39	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113135	2	15587808	AT	A	360	PASS	NBAS	CCDS1685.1	r.?	-	-	Del	intronic	D	15587808	15587816	1	12	323.035	-	-	7	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	1	5	2	7	15	32	15	32	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113554	2	16848344	G	GT	300	PASS	FAM49A	CCDS1688.1	r.?	-	-	Ins	upstream	I	16848344	16848353	1	6	262.573	-	-	8	1	1	FAM49A|CCDS1688.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	FAM49A|CCDS1688.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	11	12	11	13	0	0	./.	0	5	2	8	20	35	20	35	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113573	2	17009146	CT	C	360	PASS	-	-	-	-	-	Del	-	D	17009146	17009155	1	15	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	6	3	32	27	32	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113628	2	17264776	CA	C	374	PASS	-	-	-	-	-	Del	-	D	17264776	17264785	1	20	375.67	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	4	4	16	23	16	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113876	2	18245030	TC	T	480	PASS	-	-	-	-	-	Del	-	D	18245030	18245038	1	24	430.714	-	-	7	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	3	6	4	30	21	30	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760113883	2	18279512	CT	C	360	PASS	-	-	-	-	-	Del	-	D	18279512	18279520	1	16	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	3	3	4	27	26	27	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760114415	2	20254200	CTT	C	480	PASS	LAPTM4A	CCDS1696.1	r.?	-	-	Del	upstream	D	20254200	20254204	2	21	430.714	-	-	3	1	1	LAPTM4A|CCDS1696.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LAPTM4A|CCDS1696.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	10	15	10	0	0	./.	6	2	10	3	26	30	26	30	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760114513	2	20552814	TG	T	360	PASS	PUM2	CCDS1698.1	r.?	-	-	Del	upstream	D	20552814	20552821	1	15	323.035	-	-	6	1	1	PUM2|CCDS1698.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PUM2|CCDS1698.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	15	16	15	0	0	./.	4	2	6	2	28	27	28	27	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760114640	2	20986315	GT	G	420	PASS	C2orf43	CCDS1702.1	r.?	-	-	Del	intronic	D	20986315	20986325	1	20	375.068	-	-	9	1	1	C2orf43|CCDS1702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf43|CCDS1702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	3	4	5	5	24	38	24	38	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760114811	2	21672772	GT	G	360	PASS	-	-	-	-	-	Del	-	D	21672772	21672781	1	16	320.025	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	3	3	5	20	34	20	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760114841	2	21794771	CA	C	720	PASS	-	-	-	-	-	Del	-	D	21794771	21794779	1	48	646.07	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	7	5	8	6	34	33	34	33	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115019	2	22608461	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	22608461	22608469	1	10	266.186	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	10	0	0	./.	4	1	4	1	17	25	17	25	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115041	2	22704281	TG	T	420	PASS	-	-	-	-	-	Del	-	D	22704281	22704285	1	20	376.272	-	-	3	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	3	4	3	32	33	32	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115065	2	22796400	GT	G	420	PASS	-	-	-	-	-	Del	-	D	22796400	22796409	1	18	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	5	3	7	28	31	28	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115067	2	22811023	CT	C	360	PASS	-	-	-	-	-	Del	-	D	22811023	22811033	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	4	2	5	14	27	14	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115135	2	23071116	CA	C	360	PASS	-	-	-	-	-	Del	-	D	23071116	23071126	1	12	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	1	5	1	5	13	27	13	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115140	2	23090590	TA	T	360	PASS	-	-	-	-	-	Del	-	D	23090590	23090599	1	16	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	5	22	25	22	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115182	2	23241629	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	23241629	23241639	1	35	532.371	-	-	9	1	1	-	-	./.	0	0	0	0	17	8	17	9	0	0	./.	4	6	6	6	26	34	26	34	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115259	2	23527205	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	23527205	23527224	2	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	2	29	19	29	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115471	2	24143125	C	CA	329	PASS	ATAD2B	CCDS46227.1	r.?	-	-	Ins	intronic	I	24143125	24143134	1	16	319.423	-	-	8	1	1	ATAD2B|CCDS46227.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATAD2B|CCDS46227.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	3	4	3	31	27	31	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115507	2	24206555	CT	C	420	PASS	UBXN2A	CCDS1704.1	r.?	-	-	Del	intronic	D	24206555	24206564	1	20	375.67	-	-	8	1	1	UBXN2A|CCDS1704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBXN2A|CCDS1704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	3	5	3	30	20	30	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115522	2	24255084	AT	A	300	PASS	C2orf44	CCDS1705.1	r.?	-	-	Del	intronic	D	24255084	24255093	1	10	264.38	-	-	8	1	1	C2orf44|CCDS1705.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf44|CCDS1705.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	17	4	17	0	0	./.	1	4	3	6	22	24	22	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115540	2	24291727	G	GT	420	PASS	ENSG00000115128	CCDS1707.1	r.?	-	-	Ins	intronic	I	24291727	24291735	1	20	372.058	-	-	7	1	-	ENSG00000115128|CCDS1707.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000115128|CCDS1707.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	5	5	21	36	23	37	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115652	2	24512657	AT	A	300	PASS	ITSN2	CCDS1710.2	r.?	-	-	Del	intronic	D	24512657	24512666	1	12	269.196	-	-	8	1	1	ITSN2|CCDS1710.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITSN2|CCDS1710.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	4	2	26	18	26	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115781	2	24810157	T	TA	269	PASS	NCOA1	CCDS1713.1	r.?	-	-	Ins	intronic	I	24810157	24810167	1	12	266.186	-	-	9	1	1	NCOA1|CCDS1713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NCOA1|CCDS1713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	3	2	5	3	31	16	32	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115860	2	25030338	AT	A	360	PASS	CENPO	CCDS1714.1	r.?	-	-	Del	intronic	D	25030338	25030347	1	12	323.035	-	-	8	1	1	CENPO|CCDS1714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPO|CCDS1714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	5	1	5	2	18	9	18	9	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760115887	2	25094085	TA	T	360	PASS	ADCY3	CCDS1715.1	r.?	-	-	Del	intronic	D	25094085	25094095	1	15	323.035	-	-	9	1	1	ADCY3|CCDS1715.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY3|CCDS1715.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	2	4	2	26	18	26	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116105	2	25654809	A	AT	300	PASS	DTNB	CCDS46237.1	r.?	-	-	Ins	intronic	I	25654809	25654818	1	12	266.186	-	-	8	1	1	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	3	5	19	32	20	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116144	2	25728502	TA	T	300	PASS	DTNB	CCDS46237.1	r.?	-	-	Del	intronic	D	25728502	25728511	1	12	269.196	-	-	8	1	1	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	3	5	13	27	13	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116223	2	25971046	TG	T	300	PASS	ASXL2	ENST00000435504	r.?	-	-	Del	intronic	D	25971046	25971053	1	10	255.951	-	-	6	1	1	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	1	4	1	4	21	22	21	22	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116272	2	26118281	CT	C	420	PASS	-	-	-	-	-	Del	-	D	26118281	26118291	1	20	372.66	-	-	9	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	4	3	6	16	28	16	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116388	2	26326788	CT	C	300	PASS	RAB10	CCDS1720.1	r.?	-	-	Del	intronic	D	26326788	26326798	1	12	269.196	-	-	9	1	1	RAB10|CCDS1720.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB10|CCDS1720.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	5	2	24	11	24	11	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116389	2	26328006	GT	G	269	PASS	RAB10	CCDS1720.1	r.?	-	-	Del	intronic	D	26328006	26328015	1	10	269.196	-	-	8	1	1	RAB10|CCDS1720.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB10|CCDS1720.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	19	5	19	0	0	./.	4	1	7	3	27	21	27	21	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116520	2	26700546	GC	G	300	PASS	OTOF	CCDS1725.1	r.2412delG	c.2285delG	p.G762fs*6	Del	frameshift	D	26700546	26700551	1	10	269.196	-	-	4	1	1	OTOF|CCDS1725.1|r.2412delG|c.2285delG|p.G762fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	OTOF|CCDS1725.1|r.2412delG|c.2285delG|p.G762fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	5	2	30	20	30	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116644	2	27144033	C	CA	300	PASS	DPYSL5	CCDS1730.1	r.?	-	-	Ins	intronic	I	27144033	27144042	1	12	257.155	-	-	8	1	1	DPYSL5|CCDS1730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPYSL5|CCDS1730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	2	2	19	22	19	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116700	2	27321894	C	CA	480	PASS	KHK	CCDS1734.1	r.?	-	-	Ins	intronic	I	27321894	27321901	1	24	425.897	-	-	6	1	1	KHK|CCDS1734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CGREF1|ENST00000402550|r.1437_1438insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	8	6	8	6	0	0	./.	5	3	5	3	22	37	22	37	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116853	2	27667818	GT	G	478	PASS	IFT172	CCDS1755.1	r.?	-	-	Del	intronic	D	27667818	27667828	1	24	484.553	-	-	9	1	1	IFT172|CCDS1755.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFT172|CCDS1755.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	7	3	9	23	46	23	46	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760116916	2	27819258	CT	C	300	PASS	ZNF512	CCDS1758.1	r.?	-	-	Del	intronic	D	27819258	27819267	1	10	267.992	-	-	8	1	1	ZNF512|CCDS1758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF512|CCDS1758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	1	4	3	6	19	27	19	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117013	2	28212664	CT	C	420	PASS	BRE	CCDS1764.1	r.?	-	-	Del	intronic	D	28212664	28212674	1	20	376.874	-	-	9	1	1	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	5	5	23	28	23	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117083	2	28448514	TA	T	300	PASS	BRE	CCDS1764.1	r.?	-	-	Del	intronic	D	28448514	28448520	1	10	268.594	-	-	5	1	1	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	1	4	3	5	16	22	16	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117133	2	28648675	GT	G	660	PASS	-	-	-	-	-	Del	-	D	28648675	28648678	1	36	591.027	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	8	3	9	28	27	28	27	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117159	2	28722751	CA	C	420	PASS	PLB1	CCDS33168.1	r.?	-	-	Del	intronic	D	28722751	28722761	1	20	376.874	-	-	9	1	1	PLB1|CCDS33168.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLB1|CCDS33168.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	3	6	3	22	24	22	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117337	2	29183996	CA	C	420	PASS	FAM179A	ENST00000401723	r.?	-	-	Del	intronic	D	29183996	29184004	1	20	376.874	-	-	7	1	1	FAM179A|ENST00000401723|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM179A|ENST00000401723|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	4	3	5	8	29	8	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117485	2	29564489	CA	C	360	PASS	ALK	CCDS33172.1	r.?	-	-	Del	intronic	D	29564489	29564499	1	15	322.433	-	-	9	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	4	2	5	3	22	15	22	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117565	2	29776735	G	GT	300	PASS	ALK	CCDS33172.1	r.?	-	-	Ins	intronic	I	29776735	29776744	1	12	266.186	-	-	8	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	14	8	0	0	./.	3	2	3	4	19	39	19	39	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117726	2	30373653	CT	C	540	PASS	YPEL5	CCDS1771.1	r.?	-	-	Del	intronic	D	30373653	30373662	1	30	484.553	-	-	8	1	1	YPEL5|CCDS1771.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	YPEL5|CCDS1771.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	5	4	5	5	21	22	21	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117803	2	30612176	GA	G	600	PASS	-	-	-	-	-	Del	-	D	30612176	30612186	1	35	531.167	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	4	6	5	26	23	26	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117830	2	30701826	AT	A	420	PASS	LCLAT1	CCDS1772.1	r.?	-	-	Del	intronic	D	30701826	30701834	1	18	376.874	-	-	7	1	1	LCLAT1|CCDS1772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LCLAT1|CCDS1772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	2	5	2	32	16	32	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117833	2	30706789	AT	A	360	PASS	LCLAT1	CCDS1772.1	r.?	-	-	Del	intronic	D	30706789	30706799	1	15	321.229	-	-	9	1	1	LCLAT1|CCDS1772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LCLAT1|CCDS1772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	2	8	22	31	22	31	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117884	2	30866717	A	AT	480	PASS	LCLAT1	CCDS1772.1	r.4686_4687insu	c.?	p.?	Ins	3'UTR variant	I	30866717	30866718	1	21	425.897	-	-	0	1	1	LCLAT1|CCDS1772.1|r.4686_4687insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	LCLAT1|CCDS1772.1|r.4686_4687insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	6	12	7	13	0	0	./.	2	6	5	10	31	33	31	33	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117918	2	31013200	GA	G	480	PASS	CAPN13	CCDS46252.1	r.?	-	-	Del	intronic	D	31013200	31013209	1	21	424.091	-	-	8	1	1	CAPN13|CCDS46252.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CAPN13|CCDS46252.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	6	2	7	3	34	31	34	31	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117922	2	31046060	CA	C	420	PASS	-	-	-	-	-	Del	-	D	31046060	31046070	1	18	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	2	5	3	29	26	29	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117931	2	31089103	T	TTG	300	PASS	-	-	-	-	-	Ins	-	I	31089103	31089119	2	12	263.175	-	-	7	1	1	-	-	./.	0	0	0	0	11	18	12	18	0	0	./.	2	3	4	3	27	30	27	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117933	2	31105363	CT	C	420	PASS	-	-	-	-	-	Del	-	D	31105363	31105373	1	20	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	4	3	4	27	31	27	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760117997	2	31355979	TA	T	300	PASS	GALNT14	CCDS1773.2	r.?	-	-	Del	intronic	D	31355979	31355989	1	12	269.196	-	-	9	1	1	GALNT14|CCDS1773.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT14|CCDS1773.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	4	2	32	15	32	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118001	2	31370519	AT	A	360	PASS	-	-	-	-	-	Del	-	D	31370519	31370529	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	4	2	4	28	14	28	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118068	2	31561513	A	AT	420	PASS	XDH	CCDS1775.1	r.?	-	-	Ins	intronic	I	31561513	31561520	1	18	372.66	-	-	6	1	1	XDH|CCDS1775.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XDH|CCDS1775.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	25	14	25	0	0	./.	2	5	3	6	21	42	21	42	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118108	2	31695740	CA	C	300	PASS	-	-	-	-	-	Del	-	D	31695740	31695746	1	12	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	4	2	25	24	25	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118141	2	31843910	CA	C	360	PASS	-	-	-	-	-	Del	-	D	31843910	31843918	1	15	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	4	2	6	2	25	12	25	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118151	2	31902562	AT	A	360	PASS	-	-	-	-	-	Del	-	D	31902562	31902570	1	16	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	3	3	4	4	17	25	17	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118153	2	31924997	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	31924997	31925007	1	10	263.175	-	-	9	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	1	4	3	4	24	35	26	36	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118154	2	31924997	CT	C	420	PASS	-	-	-	-	-	Del	-	D	31924997	31925007	1	20	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	4	4	22	31	22	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118196	2	32078451	ACTAT	A	478	PASS	-	-	-	-	-	Del	-	D	32078451	32078458	4	28	484.553	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	6	3	6	26	29	26	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118327	2	32438150	AT	A	420	PASS	SLC30A6	CCDS1780.1	r.?	-	-	Del	intronic	D	32438150	32438159	1	20	376.874	-	-	8	1	1	SLC30A6|CCDS1780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC30A6|CCDS1780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	3	4	26	19	26	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118355	2	32535647	G	GA	360	PASS	YIPF4	CCDS1781.1	r.5933_5934insa	c.?	p.?	Ins	3'UTR variant	I	32535647	32535657	1	15	319.423	-	-	9	1	1	YIPF4|CCDS1781.1|r.5933_5934insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	YIPF4|CCDS1781.1|r.5933_5934insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	5	12	6	0	0	./.	4	2	5	2	44	18	44	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118374	2	32588420	CT	C	300	PASS	BIRC6	CCDS33175.2	r.?	-	-	Del	intronic	D	32588420	32588430	1	10	269.196	-	-	9	1	1	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	4	1	7	5	19	26	19	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118384	2	32605797	CAA	C	300	PASS	BIRC6	CCDS33175.2	r.?	-	-	Del	intronic	D	32605797	32605807	2	12	269.196	-	-	9	1	1	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	2	3	5	8	20	30	20	30	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118645	2	33341798	GGA	G	269	PASS	LTBP1	CCDS33177.1	r.?	-	-	Del	intronic	D	33341798	33341813	2	12	260.165	-	-	7	1	1	LTBP1|CCDS33177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LTBP1|CCDS33177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	7	2	29	24	29	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118725	2	33610470	T	TA	540	PASS	LTBP1	CCDS33177.1	r.?	-	-	Ins	intronic	I	33610470	33610479	1	30	479.134	-	-	8	1	1	LTBP1|CCDS33177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LTBP1|CCDS33177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	5	4	6	5	33	32	34	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118755	2	33651103	TA	T	509	PASS	-	-	-	-	-	Del	-	D	33651103	33651112	1	28	484.553	-	-	8	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	3	6	5	7	30	27	30	27	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760118999	2	34218897	CA	C	480	PASS	-	-	-	-	-	Del	-	D	34218897	34218904	1	24	430.714	-	-	6	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	5	5	5	36	26	36	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119105	2	34587549	GA	G	300	PASS	-	-	-	-	-	Del	-	D	34587549	34587558	1	6	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	0	7	0	31	11	31	11	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119197	2	34822549	TG	T	360	PASS	-	-	-	-	-	Del	-	D	34822549	34822551	1	16	323.035	-	-	1	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	3	3	3	3	12	13	12	13	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119423	2	35532213	CA	C	300	PASS	-	-	-	-	-	Del	-	D	35532213	35532223	1	6	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	0	5	0	12	15	12	15	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119577	2	35901317	CT	C	660	PASS	-	-	-	-	-	Del	-	D	35901317	35901327	1	30	592.231	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	9	2	10	3	34	23	34	23	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119617	2	36026782	AT	A	300	PASS	-	-	-	-	-	Del	-	D	36026782	36026789	1	10	269.196	-	-	6	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	4	1	4	1	32	27	32	27	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119641	2	36114619	AT	A	420	PASS	-	-	-	-	-	Del	-	D	36114619	36114629	1	18	375.068	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	2	7	2	21	9	21	9	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119702	2	36313403	C	CCA	360	PASS	-	-	-	-	-	Ins	-	I	36313403	36313423	2	15	315.811	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	2	5	2	30	19	31	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119786	2	36594541	GA	G	540	PASS	CRIM1	CCDS1783.1	r.?	-	-	Del	intronic	D	36594541	36594549	1	30	482.747	-	-	7	1	1	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	4	5	4	7	35	34	35	34	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760119866	2	36879209	CA	C	360	PASS	-	-	-	-	-	Del	-	D	36879209	36879218	1	12	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	1	8	2	25	6	25	6	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760120028	2	37195138	T	TC	360	PASS	STRN	CCDS1784.1	r.?	-	-	Ins	upstream	I	37195138	37195146	1	16	315.208	-	-	7	1	1	STRN|CCDS1784.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	STRN|CCDS1784.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	6	3	19	25	20	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760120050	2	37229313	TA	T	540	PASS	HEATR5B	CCDS33181.1	r.?	-	-	Del	intronic	D	37229313	37229321	1	30	484.553	-	-	7	1	1	HEATR5B|CCDS33181.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HEATR5B|CCDS33181.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	5	4	5	5	28	33	28	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760120457	2	38075442	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	38075442	38075450	1	12	318.219	-	-	7	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	1	7	3	35	26	35	26	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760120706	2	38657244	CA	C	540	PASS	-	-	-	-	-	Del	-	D	38657244	38657254	1	18	480.94	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	8	1	9	18	25	18	25	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760120763	2	38897560	GA	G	300	PASS	GALM	CCDS1797.1	r.?	-	-	Del	intronic	D	38897560	38897569	1	10	269.196	-	-	8	1	1	GALM|CCDS1797.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALM|CCDS1797.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	7	4	33	17	33	17	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121072	2	39662085	AT	A	300	PASS	MAP4K3	CCDS1803.1	r.?	-	-	Del	intronic	D	39662085	39662095	1	12	269.196	-	-	9	1	1	MAP4K3|CCDS1803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP4K3|CCDS1803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	4	4	22	14	22	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121103	2	39719460	ATATT	A	269	PASS	-	-	-	-	-	Del	-	D	39719460	39719467	4	12	269.196	-	-	1	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	2	3	4	24	31	24	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121106	2	39722100	TG	T	480	PASS	-	-	-	-	-	Del	-	D	39722100	39722108	1	21	429.51	-	-	7	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	2	9	3	23	23	23	23	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121192	2	40058775	AT	A	420	PASS	-	-	-	-	-	Del	-	D	40058775	40058785	1	20	369.048	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	5	4	23	41	23	41	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121216	2	40137100	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	40137100	40137109	1	30	477.93	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	7	15	0	0	./.	4	5	7	5	30	31	30	32	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121221	2	40142663	ATT	A	360	PASS	-	-	-	-	-	Del	-	D	40142663	40142672	2	12	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	5	1	7	1	37	21	37	21	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121555	2	41267401	AT	A	360	PASS	-	-	-	-	-	Del	-	D	41267401	41267410	1	16	320.627	-	-	8	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	3	3	4	6	22	26	22	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121604	2	41548438	CA	C	420	PASS	-	-	-	-	-	Del	-	D	41548438	41548447	1	14	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	1	6	1	23	22	23	22	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760121777	2	42061778	GA	G	360	PASS	-	-	-	-	-	Del	-	D	42061778	42061788	1	12	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	1	6	2	29	24	29	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122011	2	42684631	CA	C	420	PASS	KCNG3	CCDS1809.1	r.?	-	-	Del	intronic	D	42684631	42684641	1	18	376.874	-	-	9	1	1	KCNG3|CCDS1809.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNG3|CCDS1809.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	2	5	2	6	11	23	11	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122180	2	43001625	CT	C	300	PASS	HAAO	CCDS33187.1	r.?	-	-	Del	intronic	D	43001625	43001634	1	12	269.196	-	-	8	1	1	HAAO|CCDS33187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HAAO|CCDS33187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	2	27	30	27	30	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122198	2	43019548	AG	A	420	PASS	HAAO	CCDS33187.1	r.?	-	-	Del	intronic	D	43019548	43019554	1	20	375.068	-	-	5	1	1	HAAO|CCDS33187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HAAO|CCDS33187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	4	3	5	22	21	22	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122701	2	44424262	CT	C	300	PASS	PPM1B	CCDS1816.1	r.?	-	-	Del	intronic	D	44424262	44424272	1	12	263.777	-	-	9	1	1	PPM1B|CCDS1816.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPM1B|CCDS1816.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	3	2	3	3	21	17	21	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122723	2	44490313	TA	T	269	PASS	-	-	-	-	-	Del	-	D	44490313	44490319	1	6	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	0	5	1	7	21	22	21	22	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122725	2	44507686	A	AT	540	PASS	SLC3A1	CCDS1819.1	r.?	-	-	Ins	intronic	I	44507686	44507693	1	18	479.134	-	-	6	1	1	SLC3A1|CCDS1819.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC3A1|CCDS1819.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	8	1	10	3	35	26	35	26	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122791	2	44715485	CA	C	297	PASS	C2orf34	CCDS1820.1	r.?	-	-	Del	intronic	D	44715485	44715494	1	20	376.874	-	-	8	1	1	C2orf34|CCDS1820.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf34|CCDS1820.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	3	4	3	5	18	25	18	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760122866	2	44936757	AT	A	300	PASS	C2orf34	CCDS1820.1	r.?	-	-	Del	intronic	D	44936757	44936767	1	12	269.196	-	-	9	1	1	C2orf34|CCDS1820.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf34|CCDS1820.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	2	3	2	3	10	28	10	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123068	2	45572540	GC	G	300	PASS	-	-	-	-	-	Del	-	D	45572540	45572547	1	10	269.196	-	-	6	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	2	5	18	33	18	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123087	2	45668061	GA	G	360	PASS	SRBD1	CCDS1823.1	r.?	-	-	Del	intronic	D	45668061	45668069	1	15	323.035	-	-	7	1	1	SRBD1|CCDS1823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRBD1|CCDS1823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	4	2	6	2	21	19	21	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123146	2	45900507	CT	C	300	PASS	PRKCE	CCDS1824.1	r.?	-	-	Del	intronic	D	45900507	45900516	1	12	269.196	-	-	8	1	1	PRKCE|CCDS1824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCE|CCDS1824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	4	3	24	29	24	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123151	2	45929824	CT	C	480	PASS	PRKCE	CCDS1824.1	r.?	-	-	Del	intronic	D	45929824	45929833	1	25	430.714	-	-	8	1	1	PRKCE|CCDS1824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCE|CCDS1824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	4	4	5	28	27	28	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123316	2	46454462	GA	G	300	PASS	-	-	-	-	-	Del	-	D	46454462	46454472	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	2	4	6	21	6	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123379	2	46643640	TA	T	360	PASS	-	-	-	-	-	Del	-	D	46643640	46643649	1	12	322.433	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	1	5	1	25	6	25	6	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123385	2	46662170	TA	T	420	PASS	-	-	-	-	-	Del	-	D	46662170	46662179	1	14	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	6	1	6	23	29	23	29	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123642	2	47387458	CA	C	300	PASS	CALM2	CCDS1832.1	r.1064delU	c.?	p.?	Del	3'UTR variant	D	47387458	47387466	1	12	268.594	-	-	7	1	1	CALM2|CCDS1832.1|r.1064delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CALM2|CCDS1832.1|r.1064delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	3	3	22	22	22	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123782	2	47780537	GT	G	540	PASS	KCNK12	CCDS1835.1	r.?	-	-	Del	intronic	D	47780537	47780546	1	28	483.951	-	-	8	1	1	KCNK12|CCDS1835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNK12|CCDS1835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	6	3	7	4	26	29	26	29	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123791	2	47822211	CT	C	480	PASS	-	-	-	-	-	Del	-	D	47822211	47822219	1	24	428.305	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	5	5	5	28	35	28	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123942	2	48243239	CT	C	540	PASS	-	-	-	-	-	Del	-	D	48243239	48243244	1	28	483.951	-	-	4	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	3	6	4	7	13	38	13	38	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123964	2	48305274	CA	C	600	PASS	-	-	-	-	-	Del	-	D	48305274	48305284	1	35	538.392	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	6	6	6	29	26	29	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123984	2	48386466	TA	T	300	PASS	-	-	-	-	-	Del	-	D	48386466	48386475	1	6	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	0	6	1	24	12	24	12	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760123996	2	48444354	CA	C	300	PASS	-	-	-	-	-	Del	-	D	48444354	48444362	1	6	264.38	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	0	5	1	7	4	35	4	35	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124020	2	48526461	GT	G	422	PASS	-	-	-	-	-	Del	-	D	48526461	48526471	1	36	592.231	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	8	3	9	7	32	33	32	33	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124166	2	48952905	GA	G	540	PASS	LHCGR	CCDS1842.1	r.?	-	-	Del	intronic	D	48952905	48952915	1	28	483.349	-	-	9	1	1	LHCGR|CCDS1842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHCGR|CCDS1842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	6	3	6	22	26	22	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124184	2	49006040	TTC	T	420	PASS	STON1-GTF2A1L	ENST00000402114	r.?	-	-	Del	downstream	D	49006040	49006044	2	18	376.874	-	-	1	1	1	STON1-GTF2A1L|ENST00000402114|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	STON1-GTF2A1L|ENST00000402114|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	13	10	13	0	0	./.	5	2	5	3	26	28	26	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124216	2	49109051	GT	G	660	PASS	-	-	-	-	-	Del	-	D	49109051	49109061	1	22	591.629	-	-	9	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	1	10	1	11	22	37	22	37	1	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124234	2	49203755	CT	C	389	PASS	FSHR	CCDS1843.1	r.?	-	-	Del	intronic	D	49203755	49203763	1	25	430.714	-	-	7	1	1	FSHR|CCDS1843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSHR|CCDS1843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	4	4	4	9	22	33	22	33	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124246	2	49239056	AAG	A	480	PASS	FSHR	CCDS1843.1	r.?	-	-	Del	intronic	D	49239056	49239067	2	24	428.908	-	-	5	1	1	FSHR|CCDS1843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSHR|CCDS1843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	5	3	5	26	19	26	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124496	2	50272026	TA	T	538	PASS	NRXN1	CCDS46282.1	r.?	-	-	Del	intronic	D	50272026	50272035	1	27	538.392	-	-	8	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	8	2	9	3	28	32	28	32	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124607	2	50592247	CT	C	300	PASS	NRXN1	CCDS46282.1	r.?	-	-	Del	intronic	D	50592247	50592257	1	10	269.196	-	-	9	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	1	4	2	4	10	27	10	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124768	2	51086272	AT	A	360	PASS	NRXN1	CCDS46282.1	r.?	-	-	Del	intronic	D	51086272	51086282	1	12	323.035	-	-	9	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	5	1	6	1	30	29	30	29	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124836	2	51335531	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	51335531	51335540	1	18	372.66	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	5	3	5	23	29	24	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760124977	2	51785383	CT	C	321	PASS	-	-	-	-	-	Del	-	D	51785383	51785393	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	2	4	3	5	30	23	30	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125058	2	52068628	CT	C	480	PASS	-	-	-	-	-	Del	-	D	52068628	52068637	1	21	430.714	-	-	8	1	-	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	6	2	7	7	30	26	30	26	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125080	2	52284036	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	52284036	52284043	1	12	319.423	-	-	6	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	1	5	1	7	19	27	21	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125149	2	52579890	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	52579890	52579894	1	8	372.66	-	-	3	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	0	7	0	26	5	26	5	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125188	2	52688541	TA	T	420	PASS	-	-	-	-	-	Del	-	D	52688541	52688550	1	18	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	5	2	7	11	38	11	38	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125241	2	52912745	TA	T	360	PASS	-	-	-	-	-	Del	-	D	52912745	52912753	1	15	321.229	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	4	4	23	27	23	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125243	2	52926531	AT	A	360	PASS	-	-	-	-	-	Del	-	D	52926531	52926541	1	12	319.423	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	1	5	1	6	22	24	22	24	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125307	2	53128891	GA	G	360	PASS	-	-	-	-	-	Del	-	D	53128891	53128900	1	15	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	2	5	15	18	15	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125393	2	53442440	CT	C	355	PASS	-	-	-	-	-	Del	-	D	53442440	53442449	1	16	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	5	3	32	21	32	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125443	2	53695418	GA	G	420	PASS	-	-	-	-	-	Del	-	D	53695418	53695427	1	18	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	5	2	5	3	23	29	23	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125738	2	54621606	CA	C	509	PASS	-	-	-	-	-	Del	-	D	54621606	54621616	1	30	484.553	-	-	9	1	1	-	-	./.	0	0	0	0	9	3	9	3	0	0	./.	4	5	4	8	29	18	29	18	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760125758	2	54715886	GA	G	300	PASS	SPTBN1	CCDS33198.1	r.?	-	-	Del	intronic	D	54715886	54715895	1	10	264.38	-	-	8	1	1	SPTBN1|CCDS33198.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPTBN1|CCDS33198.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	1	4	3	4	10	21	10	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126114	2	55734936	CT	C	480	PASS	-	-	-	-	-	Del	-	D	55734936	55734946	1	21	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	2	10	4	30	30	30	30	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126233	2	55988437	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	55988437	55988445	1	15	319.423	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	2	4	29	22	30	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126273	2	56128404	GC	G	720	PASS	EFEMP1	CCDS1857.1	r.?	-	-	Del	intronic	D	56128404	56128406	1	40	646.07	-	-	1	1	1	EFEMP1|CCDS1857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFEMP1|CCDS1857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	9	3	10	3	30	24	30	24	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126284	2	56167810	GT	G	300	PASS	-	-	-	-	-	Del	-	D	56167810	56167814	1	10	269.196	-	-	3	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	1	4	3	6	16	22	16	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126290	2	56195772	AT	A	660	PASS	-	-	-	-	-	Del	-	D	56195772	56195780	1	36	592.231	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	8	4	10	20	26	20	26	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126310	2	56290511	CT	C	269	PASS	-	-	-	-	-	Del	-	D	56290511	56290521	1	12	267.992	-	-	9	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	2	3	4	4	37	31	37	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126453	2	57061292	A	AG	780	PASS	-	-	-	-	-	Ins	-	I	57061292	57061298	1	54	692.083	-	-	5	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	8	6	10	25	21	25	21	6	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126627	2	57616052	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	57616052	57616057	1	35	532.371	-	-	4	1	1	-	-	./.	0	0	0	0	12	10	12	12	0	0	./.	4	6	4	7	25	33	25	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126740	2	58105770	CA	C	300	PASS	-	-	-	-	-	Del	-	D	58105770	58105780	1	12	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	3	3	4	21	33	21	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126744	2	58121857	GA	G	480	PASS	-	-	-	-	-	Del	-	D	58121857	58121867	1	21	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	2	6	2	6	14	28	14	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126861	2	58594575	TA	T	540	PASS	-	-	-	-	-	Del	-	D	58594575	58594585	1	28	484.553	-	-	9	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	6	3	6	6	14	15	14	15	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126864	2	58622684	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	58622684	58622693	1	21	425.897	-	-	8	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	6	2	6	2	33	8	34	8	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126909	2	58871318	GTT	G	360	PASS	-	-	-	-	-	Del	-	D	58871318	58871322	2	16	320.627	-	-	3	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	3	5	20	16	20	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760126921	2	58918149	CAA	C	480	PASS	-	-	-	-	-	Del	-	D	58918149	58918153	2	21	430.714	-	-	3	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	6	2	8	4	34	31	34	31	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127036	2	59386497	TA	T	300	PASS	-	-	-	-	-	Del	-	D	59386497	59386506	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	4	1	4	1	28	14	28	14	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127054	2	59460890	TC	T	300	PASS	-	-	-	-	-	Del	-	D	59460890	59460896	1	12	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	4	3	22	23	22	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127086	2	59624010	GA	G	540	PASS	-	-	-	-	-	Del	-	D	59624010	59624019	1	30	484.553	-	-	8	1	1	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	4	5	4	6	22	24	22	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127103	2	59679798	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	59679798	59679802	2	12	269.196	-	-	3	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	6	13	35	13	35	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127131	2	59776077	CAA	C	360	PASS	-	-	-	-	-	Del	-	D	59776077	59776086	2	15	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	4	7	4	32	26	32	26	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127162	2	59898192	AT	A	480	PASS	-	-	-	-	-	Del	-	D	59898192	59898202	1	21	425.295	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	2	7	6	28	26	28	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127228	2	60203156	CT	C	540	PASS	-	-	-	-	-	Del	-	D	60203156	60203166	1	28	476.726	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	6	3	8	3	31	24	31	24	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127242	2	60284276	TA	T	480	PASS	-	-	-	-	-	Del	-	D	60284276	60284283	1	25	430.112	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	4	4	5	4	23	24	23	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127256	2	60336359	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	60336359	60336369	1	15	317.617	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	2	5	5	35	26	36	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127317	2	60547292	CT	C	420	PASS	-	-	-	-	-	Del	-	D	60547292	60547302	1	18	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	5	3	5	22	16	22	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127394	2	60747449	CT	C	360	PASS	BCL11A	CCDS1862.1	r.?	-	-	Del	intronic	D	60747449	60747459	1	15	323.035	-	-	9	1	1	BCL11A|CCDS1862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL11A|CCDS1862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	25	10	25	0	0	./.	2	4	4	5	21	22	21	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127572	2	61199816	CA	C	480	PASS	PUS10	CCDS1865.1	r.?	-	-	Del	intronic	D	61199816	61199824	1	21	430.112	-	-	7	1	1	PUS10|CCDS1865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PUS10|CCDS1865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	6	2	8	2	31	8	31	8	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127701	2	61506608	CT	C	300	PASS	USP34	CCDS42686.1	r.?	-	-	Del	intronic	D	61506608	61506618	1	12	269.196	-	-	9	1	1	USP34|CCDS42686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP34|CCDS42686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	3	2	4	3	24	9	24	9	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760127870	2	61844282	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	61844282	61844289	1	20	372.66	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	6	3	31	26	31	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128105	2	62371831	CA	C	300	PASS	AC107081.2	ENST00000506268	r.?	-	-	Del	intronic	D	62371831	62371840	1	12	269.196	-	-	8	1	1	AC107081.2|ENST00000506268|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC107081.2|ENST00000506268|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	2	3	3	6	34	20	34	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128148	2	62498675	TA	T	360	PASS	AC107081.2	ENST00000506268	r.?	-	-	Del	intronic	D	62498675	62498683	1	15	323.035	-	-	7	1	1	AC107081.2|ENST00000506268|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC107081.2|ENST00000506268|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	7	3	33	26	33	26	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128205	2	62666391	CT	C	298	PASS	-	-	-	-	-	Del	-	D	62666391	62666401	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	4	4	5	27	27	27	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128550	2	63914210	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	63914210	63914219	1	10	266.186	-	-	8	1	1	-	-	./.	0	0	0	0	13	20	13	21	0	0	./.	1	4	2	4	25	21	25	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128640	2	64177916	CT	C	300	PASS	VPS54	CCDS33208.1	r.?	-	-	Del	intronic	D	64177916	64177926	1	12	269.196	-	-	9	1	1	VPS54|CCDS33208.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS54|CCDS33208.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	5	2	30	18	30	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128655	2	64230850	CA	C	300	PASS	VPS54	CCDS33208.1	r.?	-	-	Del	intronic	D	64230850	64230860	1	10	269.196	-	-	9	1	1	VPS54|CCDS33208.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	VPS54|CCDS33208.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	4	4	20	6	20	6	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760128683	2	64298654	CT	C	269	PASS	-	-	-	-	-	Del	-	D	64298654	64298664	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	1	7	1	33	21	33	21	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129102	2	65429142	TA	T	329	PASS	-	-	-	-	-	Del	-	D	65429142	65429151	1	15	315.208	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	2	5	24	34	24	34	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129370	2	66026550	G	GA	449	PASS	-	-	-	-	-	Ins	-	I	66026550	66026557	1	21	425.897	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	2	6	4	30	25	30	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129394	2	66136687	AT	A	300	PASS	-	-	-	-	-	Del	-	D	66136687	66136697	1	12	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	2	3	20	27	20	27	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129488	2	66450670	GA	G	420	PASS	-	-	-	-	-	Del	-	D	66450670	66450677	1	18	376.874	-	-	6	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	5	2	5	16	26	16	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129512	2	66570748	CA	C	300	PASS	-	-	-	-	-	Del	-	D	66570748	66570756	1	6	267.992	-	-	7	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	0	5	0	5	36	30	36	30	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129558	2	66760852	TA	T	360	PASS	MEIS1	CCDS46309.1	r.?	-	-	Del	intronic	D	66760852	66760862	1	16	321.229	-	-	9	1	1	MEIS1|CCDS46309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEIS1|CCDS46309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	3	3	4	13	18	13	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129604	2	66879113	GA	G	360	PASS	-	-	-	-	-	Del	-	D	66879113	66879123	1	16	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	3	4	14	38	14	38	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129609	2	66890777	CT	C	360	PASS	-	-	-	-	-	Del	-	D	66890777	66890785	1	12	321.831	-	-	7	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	5	1	6	2	27	28	27	28	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129616	2	66901484	CT	C	540	PASS	-	-	-	-	-	Del	-	D	66901484	66901492	1	30	483.951	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	4	5	6	25	26	25	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129682	2	67100365	C	CAG	300	PASS	-	-	-	-	-	Ins	-	I	67100365	67100381	2	12	261.369	-	-	7	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	2	3	3	4	30	33	30	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129835	2	67669711	CA	C	360	PASS	-	-	-	-	-	Del	-	D	67669711	67669721	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	7	2	23	10	23	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129886	2	67806696	AT	A	420	PASS	-	-	-	-	-	Del	-	D	67806696	67806704	1	18	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	5	4	7	22	23	22	23	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760129915	2	67905698	AT	A	420	PASS	-	-	-	-	-	Del	-	D	67905698	67905705	1	8	376.874	-	-	6	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	0	7	0	8	2	19	2	19	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130120	2	68507770	GA	G	300	PASS	CNRIP1	CCDS46311.1	r.?	-	-	Del	downstream	D	68507770	68507779	1	6	269.196	-	-	8	1	1	CNRIP1|CCDS46311.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CNRIP1|CCDS46311.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	16	12	16	0	0	./.	0	5	0	6	4	31	4	31	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130338	2	69312471	AT	A	300	PASS	ANTXR1	CCDS1892.1	r.?	-	-	Del	intronic	D	69312471	69312481	1	10	269.196	-	-	9	1	1	ANTXR1|CCDS1892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANTXR1|CCDS1892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	2	6	17	25	17	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130368	2	69458722	AT	A	360	PASS	ANTXR1	CCDS1892.1	r.?	-	-	Del	intronic	D	69458722	69458729	1	12	323.035	-	-	6	1	1	ANTXR1|CCDS1892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANTXR1|CCDS1892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	1	5	2	5	19	26	19	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130376	2	69484720	GA	G	449	PASS	-	-	-	-	-	Del	-	D	69484720	69484728	1	21	430.112	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	2	7	2	24	24	24	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130378	2	69505489	CA	C	300	PASS	-	-	-	-	-	Del	-	D	69505489	69505497	1	10	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	1	4	2	5	25	33	25	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130474	2	69747484	TC	T	269	PASS	AAK1	CCDS1893.2	r.?	-	-	Del	intronic	D	69747484	69747486	1	6	252.94	-	-	1	1	-	AAK1|CCDS1893.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AAK1|CCDS1893.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	0	5	0	9	13	38	13	38	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130577	2	70039263	T	TG	540	PASS	ANXA4	CCDS1894.1	r.?	-	-	Ins	intronic	I	70039263	70039264	1	30	477.93	-	-	0	1	1	ANXA4|CCDS1894.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANXA4|CCDS1894.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	4	7	5	17	31	17	31	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130793	2	70613094	AT	A	420	PASS	-	-	-	-	-	Del	-	D	70613094	70613104	1	20	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	3	5	3	21	35	21	35	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130962	2	71067483	G	GT	329	PASS	CD207	ENST00000410009	r.?	-	-	Ins	upstream	I	71067483	71067491	1	15	318.821	-	-	7	1	-	CD207|ENST00000410009|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CD207|ENST00000410009|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	7	19	7	0	0	./.	2	4	4	4	31	16	31	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130963	2	71078817	CT	C	300	PASS	-	-	-	-	-	Del	-	D	71078817	71078827	1	6	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	5	0	5	0	19	0	19	0	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130983	2	71123827	TG	T	420	PASS	VAX2	CCDS1911.1	r.?	-	-	Del	upstream	D	71123827	71123833	1	20	376.272	-	-	5	1	1	VAX2|CCDS1911.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	VAX2|CCDS1911.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	7	8	7	0	0	./.	4	3	4	4	26	34	26	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760130986	2	71139879	TG	T	300	PASS	VAX2	CCDS1911.1	r.?	-	-	Del	intronic	D	71139879	71139887	1	12	269.196	-	-	7	1	1	VAX2|CCDS1911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VAX2|CCDS1911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	3	9	3	0	0	./.	2	3	4	4	30	26	30	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131288	2	72299027	CT	C	360	PASS	-	-	-	-	-	Del	-	D	72299027	72299037	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	4	2	6	7	26	7	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131436	2	72933678	GT	G	660	PASS	EXOC6B	CCDS46333.1	r.?	-	-	Del	intronic	D	72933678	72933687	1	42	592.231	-	-	8	1	1	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	5	6	5	6	24	26	24	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131444	2	72968602	TA	T	420	PASS	EXOC6B	CCDS46333.1	r.245-5delu	c.114-5delt	p.?	Del	splice region	D	72968602	72968612	1	20	376.874	-	-	9	1	1	EXOC6B|CCDS46333.1|r.245-5delu|c.114-5delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	EXOC6B|CCDS46333.1|r.245-5delu|c.114-5delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	16	11	16	11	0	0	./.	3	4	5	4	28	30	28	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131454	2	73020722	GA	G	480	PASS	EXOC6B	CCDS46333.1	r.?	-	-	Del	intronic	D	73020722	73020731	1	25	430.714	-	-	8	1	1	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	5	6	33	20	33	20	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131482	2	73100289	CT	C	300	PASS	-	-	-	-	-	Del	-	D	73100289	73100299	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	2	3	25	24	25	24	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131593	2	73513649	AAG	A	300	PASS	AC010913.1	ENST00000500494	r.664_665delAG	-	-	Del	non-coding variant	D	73513649	73513662	2	10	269.196	-	-	6	1	1	AC010913.1|ENST00000500494|r.664_665delAG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	AC010913.1|ENST00000500494|r.664_665delAG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	10	4	10	4	0	0	./.	4	1	8	3	28	23	28	23	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131656	2	73739680	AT	A	300	PASS	ALMS1	CCDS42697.1	r.?	-	-	Del	intronic	D	73739680	73739689	1	10	269.196	-	-	8	1	1	ALMS1|CCDS42697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALMS1|CCDS42697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	1	4	2	5	10	12	10	12	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131688	2	73854469	GA	G	300	PASS	-	-	-	-	-	Del	-	D	73854469	73854478	1	6	268.594	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	0	5	0	6	17	26	17	26	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131707	2	73917432	GA	G	276	PASS	-	-	-	-	-	Del	-	D	73917432	73917442	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	4	35	25	35	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131790	2	74173717	CTT	C	300	PASS	DGUOK	CCDS1931.1	r.?	-	-	Del	intronic	D	74173717	74173722	2	10	268.594	-	-	4	1	1	DGUOK|CCDS1931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGUOK|CCDS1931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	4	1	4	6	25	41	25	41	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131817	2	74238806	CT	C	420	PASS	TET3	ENST00000409262	r.?	-	-	Del	intronic	D	74238806	74238815	1	20	376.874	-	-	8	1	1	TET3|ENST00000409262|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TET3|ENST00000409262|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	4	3	4	3	34	29	34	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760131995	2	74896981	CT	C	300	PASS	SEMA4F	CCDS1955.1	r.?	-	-	Del	intronic	D	74896981	74896991	1	6	269.196	-	-	9	1	1	SEMA4F|CCDS1955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA4F|CCDS1955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	0	5	1	8	5	28	5	28	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132056	2	75064717	AC	A	300	PASS	HK2	CCDS1956.1	r.?	-	-	Del	intronic	D	75064717	75064724	1	12	269.196	-	-	6	1	1	HK2|CCDS1956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HK2|CCDS1956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	2	4	22	25	22	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132132	2	75347193	CT	C	389	PASS	TACR1	CCDS1958.1	r.?	-	-	Del	intronic	D	75347193	75347203	1	20	375.67	-	-	9	1	1	TACR1|CCDS1958.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TACR1|CCDS1958.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	3	4	3	5	24	31	24	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132209	2	75654570	TA	T	300	PASS	-	-	-	-	-	Del	-	D	75654570	75654579	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	1	4	2	5	19	29	19	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132216	2	75676217	CA	C	300	PASS	-	-	-	-	-	Del	-	D	75676217	75676227	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	29	10	29	10	0	0	./.	1	4	3	4	23	23	23	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132236	2	75760314	GA	G	300	PASS	FAM176A	CCDS1959.1	r.?	-	-	Del	intronic	D	75760314	75760324	1	12	262.573	-	-	9	1	-	FAM176A|CCDS1959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM176A|CCDS1959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	2	3	4	3	22	16	22	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132240	2	75774693	CT	C	360	PASS	FAM176A	CCDS1959.1	r.?	-	-	Del	intronic	D	75774693	75774702	1	15	322.433	-	-	8	1	1	FAM176A|CCDS1959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM176A|CCDS1959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	6	6	31	29	31	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132249	2	75818529	GA	G	360	PASS	-	-	-	-	-	Del	-	D	75818529	75818539	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	4	4	5	19	16	19	16	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132250	2	75819579	AT	A	300	PASS	-	-	-	-	-	Del	-	D	75819579	75819589	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	3	7	17	31	17	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132396	2	76342496	CT	C	300	PASS	-	-	-	-	-	Del	-	D	76342496	76342506	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	3	3	6	18	25	18	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132513	2	76657787	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	76657787	76657795	1	27	531.769	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	8	4	9	27	33	28	33	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132625	2	76922456	GT	G	420	PASS	-	-	-	-	-	Del	-	D	76922456	76922464	1	20	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	4	3	6	6	35	34	35	34	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132658	2	76984862	GA	G	480	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Del	intronic	D	76984862	76984870	1	24	430.714	-	-	7	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	5	4	6	22	25	22	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132791	2	77557310	TG	T	329	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Del	intronic	D	77557310	77557318	1	12	323.035	-	-	7	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	1	5	1	6	10	36	10	36	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760132950	2	78162080	CA	C	360	PASS	-	-	-	-	-	Del	-	D	78162080	78162090	1	16	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	3	13	18	13	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133063	2	78560904	TG	T	350	PASS	-	-	-	-	-	Del	-	D	78560904	78560909	1	12	322.433	-	-	4	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	1	5	2	5	36	30	36	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133210	2	79179271	TGA	T	749	PASS	-	-	-	-	-	Del	-	D	79179271	79179278	2	56	697.501	-	-	3	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	7	6	9	29	45	29	45	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133237	2	79231790	TA	T	360	PASS	-	-	-	-	-	Del	-	D	79231790	79231799	1	15	322.433	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	3	4	26	19	26	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133284	2	79428553	G	GA	420	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	79428553	79428560	1	14	372.66	-	-	6	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	1	6	3	7	29	29	29	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133433	2	80009955	CA	C	329	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80009955	80009964	1	12	321.229	-	-	8	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	5	1	6	1	20	19	20	19	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133570	2	80527741	T	TTC	598	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	80527741	80527752	2	40	574.17	-	-	5	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	4	7	7	9	17	22	17	22	7	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133591	2	80588709	C	CA	480	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	80588709	80588717	1	25	425.897	-	-	7	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	4	6	6	23	35	23	35	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133603	2	80615148	C	CA	300	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	80615148	80615155	1	12	266.186	-	-	6	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	15	9	0	0	./.	2	3	2	3	25	14	26	15	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133771	2	81226453	AT	A	300	PASS	-	-	-	-	-	Del	-	D	81226453	81226460	1	10	269.196	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	4	3	25	18	25	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133775	2	81303103	GA	G	300	PASS	-	-	-	-	-	Del	-	D	81303103	81303112	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	2	3	2	24	24	24	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133820	2	81530406	CT	C	389	PASS	-	-	-	-	-	Del	-	D	81530406	81530414	1	20	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	3	4	3	34	26	34	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133870	2	81792024	TCAAA	T	269	PASS	-	-	-	-	-	Del	-	D	81792024	81792031	4	12	269.196	-	-	1	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	3	2	5	2	17	16	17	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133899	2	81967131	GA	G	300	PASS	-	-	-	-	-	Del	-	D	81967131	81967140	1	12	268.594	-	-	8	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	3	2	5	3	41	30	41	30	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760133942	2	82072390	CA	C	370	PASS	-	-	-	-	-	Del	-	D	82072390	82072392	1	24	484.553	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	7	3	9	28	35	28	35	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134056	2	82395114	CT	C	300	PASS	-	-	-	-	-	Del	-	D	82395114	82395124	1	6	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	0	5	0	5	6	26	6	26	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134086	2	82477366	ACT	A	540	PASS	-	-	-	-	-	Del	-	D	82477366	82477369	2	30	482.747	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	5	5	6	29	36	29	36	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134101	2	82540894	TA	T	360	PASS	-	-	-	-	-	Del	-	D	82540894	82540903	1	7	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	0	8	1	18	3	18	3	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134110	2	82623366	CT	C	360	PASS	-	-	-	-	-	Del	-	D	82623366	82623374	1	15	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	2	4	3	5	21	18	21	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134211	2	83106898	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	83106898	83106907	1	16	319.423	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	3	3	4	23	23	23	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134263	2	83263496	TA	T	360	PASS	-	-	-	-	-	Del	-	D	83263496	83263505	1	15	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	2	4	2	5	6	26	6	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134269	2	83295317	GT	G	300	PASS	-	-	-	-	-	Del	-	D	83295317	83295326	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	4	1	23	18	23	18	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134278	2	83350911	CA	C	300	PASS	-	-	-	-	-	Del	-	D	83350911	83350921	1	12	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	3	2	3	6	21	6	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134332	2	83516294	GAC	G	360	PASS	-	-	-	-	-	Del	-	D	83516294	83516308	2	12	321.831	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	1	8	2	41	22	41	22	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134427	2	84059104	AT	A	420	PASS	-	-	-	-	-	Del	-	D	84059104	84059113	1	20	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	4	3	5	8	18	8	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134531	2	84587083	TA	T	420	PASS	-	-	-	-	-	Del	-	D	84587083	84587093	1	20	374.466	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	4	3	5	22	25	22	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134632	2	85056051	TG	T	300	PASS	C2orf89	CCDS46349.1	r.?	-	-	Del	intronic	D	85056051	85056057	1	12	269.196	-	-	5	1	1	C2orf89|CCDS46349.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf89|CCDS46349.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	2	3	3	6	20	34	20	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134706	2	85238812	AT	A	360	PASS	KCMF1	CCDS46350.1	r.?	-	-	Del	intronic	D	85238812	85238822	1	12	323.035	-	-	9	1	1	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	5	1	5	16	31	16	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134713	2	85249241	G	GT	540	PASS	KCMF1	CCDS46350.1	r.?	-	-	Ins	intronic	I	85249241	85249250	1	28	476.124	-	-	8	1	1	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	6	3	8	6	25	29	25	30	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134716	2	85266941	CT	C	420	PASS	KCMF1	CCDS46350.1	r.?	-	-	Del	intronic	D	85266941	85266951	1	18	376.874	-	-	9	1	1	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	2	5	3	7	22	27	22	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134794	2	85432814	AT	A	360	PASS	TCF7L1	CCDS1971.1	r.?	-	-	Del	intronic	D	85432814	85432824	1	15	322.433	-	-	9	1	1	TCF7L1|CCDS1971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF7L1|CCDS1971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	2	4	4	33	25	33	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134841	2	85517457	CT	C	300	PASS	TCF7L1	CCDS1971.1	r.?	-	-	Del	intronic	D	85517457	85517462	1	10	267.992	-	-	4	1	1	TCF7L1|CCDS1971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AC093162.1|ENST00000502432|r.2698delU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	1	5	17	35	17	35	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134912	2	85695685	CT	C	306	PASS	-	-	-	-	-	Del	-	D	85695685	85695695	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	2	4	2	5	22	35	22	35	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134926	2	85728489	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	85728489	85728501	2	12	268.594	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	2	10	33	10	33	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760134934	2	85753822	A	ACT	389	PASS	-	-	-	-	-	Ins	-	I	85753822	85753834	2	20	366.639	-	-	5	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	3	5	5	28	31	28	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135204	2	86490293	T	TA	420	PASS	REEP1	CCDS1989.1	r.?	-	-	Ins	intronic	I	86490293	86490302	1	20	372.66	-	-	8	1	1	REEP1|CCDS1989.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	REEP1|CCDS1989.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	18	14	0	0	./.	3	4	3	5	32	19	32	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135327	2	86914335	CA	C	360	PASS	VPS24	ENST00000409384	r.?	-	-	Del	intronic	D	86914335	86914344	1	12	323.035	-	-	8	1	1	VPS24|ENST00000409384|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	VPS24|ENST00000409384|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	1	7	3	37	23	37	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135586	2	87816446	CT	C	332	PASS	-	-	-	-	-	Del	-	D	87816446	87816456	1	24	430.112	-	-	9	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	5	3	6	24	28	24	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135632	2	88210770	CT	C	360	PASS	-	-	-	-	-	Del	-	D	88210770	88210780	1	16	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	5	3	18	14	18	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135650	2	88296690	AT	A	300	PASS	-	-	-	-	-	Del	-	D	88296690	88296696	1	12	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	4	3	19	21	19	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135778	2	88695722	TA	T	300	PASS	-	-	-	-	-	Del	-	D	88695722	88695732	1	6	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	5	0	6	1	26	19	26	19	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135876	2	89016197	CT	C	660	PASS	RPIA	CCDS2004.2	r.?	-	-	Del	intronic	D	89016197	89016205	1	40	592.231	-	-	7	1	1	RPIA|CCDS2004.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPIA|CCDS2004.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	7	4	10	30	50	30	50	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760135888	2	89071205	C	CA	270	PASS	-	-	-	-	-	Ins	-	I	89071205	89071212	1	50	692.083	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	9	4	11	55	95	55	95	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760136654	2	91846434	T	TG	375	PASS	-	-	-	-	-	Ins	-	I	91846434	91846444	1	20	360.619	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	3	4	2	52	45	52	45	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760136967	2	92120082	AT	A	366	PASS	-	-	-	-	-	Del	-	D	92120082	92120088	1	14	376.874	-	-	5	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	6	1	7	2	41	24	41	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137125	2	92304327	CT	C	271	PASS	-	-	-	-	-	Del	-	D	92304327	92304335	1	12	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	7	7	10	8	0	0	./.	3	2	6	2	22	15	22	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137417	2	95907694	GA	G	300	PASS	-	-	-	-	-	Del	-	D	95907694	95907702	1	12	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	2	4	30	23	30	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137423	2	95940785	GTC	G	360	PASS	PROM2	CCDS2012.1	r.?	-	-	Del	intronic	D	95940785	95940789	2	12	323.035	-	-	1	1	1	PROM2|CCDS2012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PROM2|CCDS2012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	5	1	7	3	26	20	26	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137476	2	96408724	AT	A	360	PASS	-	-	-	-	-	Del	-	D	96408724	96408731	1	15	323.035	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	6	6	26	21	26	21	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137489	2	96484190	CA	C	534	PASS	-	-	-	-	-	Del	-	D	96484190	96484196	1	28	484.553	-	-	5	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	3	6	6	7	32	39	32	39	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137664	2	96904608	CA	C	360	PASS	-	-	-	-	-	Del	-	D	96904608	96904618	1	12	315.208	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	5	1	5	13	27	13	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137715	2	97155332	CT	C	269	PASS	-	-	-	-	-	Del	-	D	97155332	97155340	1	12	257.155	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	4	2	23	15	23	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137727	2	97193336	TG	T	300	PASS	-	-	-	-	-	Del	-	D	97193336	97193342	1	12	267.992	-	-	5	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	2	3	5	5	8	25	8	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137729	2	97194979	TCTTC	T	420	PASS	-	-	-	-	-	Del	-	D	97194979	97194989	4	18	376.874	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	5	3	5	22	24	22	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760137766	2	97362483	CA	C	360	PASS	ENSG00000249715	CCDS4406.1	r.?	-	-	Del	intronic	D	97362483	97362493	1	12	323.035	-	-	9	1	1	ENSG00000249715|CCDS4406.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000249715|CCDS4406.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	1	5	3	20	22	20	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138033	2	98370871	CT	C	300	PASS	TMEM131	CCDS46368.1	r.?	-	-	Del	downstream	D	98370871	98370881	1	12	268.594	-	-	9	1	1	TMEM131|CCDS46368.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TMEM131|CCDS46368.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	8	6	8	0	0	./.	3	2	4	3	31	13	31	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138067	2	98473895	GA	G	540	PASS	TMEM131	CCDS46368.1	r.?	-	-	Del	intronic	D	98473895	98473903	1	28	484.553	-	-	7	1	1	TMEM131|CCDS46368.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM131|CCDS46368.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	6	3	9	34	29	34	29	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138119	2	98681951	CT	C	271	PASS	-	-	-	-	-	Del	-	D	98681951	98681958	1	12	269.196	-	-	6	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	4	2	10	11	10	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138162	2	98800383	CT	C	300	PASS	VWA3B	CCDS42718.1	r.?	-	-	Del	intronic	D	98800383	98800391	1	10	269.196	-	-	7	1	1	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	3	4	20	33	20	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138335	2	99700108	TA	T	360	PASS	TSGA10	CCDS2037.1	r.?	-	-	Del	intronic	D	99700108	99700114	1	15	323.035	-	-	5	1	1	TSGA10|CCDS2037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSGA10|CCDS2037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	2	4	3	8	31	27	31	27	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138531	2	100166045	CA	C	300	PASS	AFF3	CCDS33258.1	r.5790delU	c.?	p.?	Del	3'UTR variant	D	100166045	100166055	1	12	269.196	-	-	9	1	1	AFF3|CCDS33258.1|r.5790delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AFF3|CCDS33258.1|r.5790delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	6	3	27	14	27	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138537	2	100185024	GA	G	480	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100185024	100185034	1	21	430.714	-	-	9	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	6	4	6	31	33	31	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138540	2	100193375	TG	T	389	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100193375	100193382	1	20	376.874	-	-	6	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	3	4	19	23	19	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138619	2	100395230	AT	A	540	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100395230	100395238	1	30	484.553	-	-	7	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	5	5	7	29	23	29	23	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138664	2	100530285	CA	C	360	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100530285	100530295	1	15	323.035	-	-	9	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	2	4	2	4	19	26	19	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138723	2	100871018	AT	A	840	PASS	-	-	-	-	-	Del	-	D	100871018	100871026	1	48	753.749	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	11	3	13	4	36	13	36	13	13	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138801	2	101201458	CCA	C	420	PASS	-	-	-	-	-	Del	-	D	101201458	101201475	2	18	374.466	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	5	2	5	6	28	27	28	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138873	2	101388550	CT	C	300	PASS	-	-	-	-	-	Del	-	D	101388550	101388559	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	1	4	2	5	23	33	23	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138988	2	101715843	CA	C	280	PASS	TBC1D8	CCDS46375.1	r.?	-	-	Del	intronic	D	101715843	101715851	1	15	323.035	-	-	7	1	1	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	2	4	2	4	28	22	28	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760138996	2	101734202	AT	A	412	PASS	TBC1D8	CCDS46375.1	r.?	-	-	Del	intronic	D	101734202	101734211	1	21	423.489	-	-	8	1	1	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	6	3	6	20	20	20	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139000	2	101738708	AT	A	360	PASS	TBC1D8	CCDS46375.1	r.?	-	-	Del	intronic	D	101738708	101738715	1	12	323.035	-	-	6	1	1	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	1	5	3	21	16	21	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139037	2	101858588	CA	C	297	PASS	-	-	-	-	-	Del	-	D	101858588	101858598	1	12	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	3	4	22	26	22	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139150	2	102105711	AT	A	540	PASS	-	-	-	-	-	Del	-	D	102105711	102105721	1	24	484.553	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	7	5	8	14	34	14	34	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139162	2	102136750	CA	C	540	PASS	-	-	-	-	-	Del	-	D	102136750	102136759	1	28	484.553	-	-	8	1	1	-	-	./.	0	0	0	0	1	14	1	14	0	0	./.	6	3	7	3	27	20	27	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139167	2	102142742	GA	G	300	PASS	-	-	-	-	-	Del	-	D	102142742	102142751	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	5	3	30	25	30	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139270	2	102363573	CT	C	300	PASS	MAP4K4	ENST00000425019	r.?	-	-	Del	intronic	D	102363573	102363583	1	6	269.196	-	-	9	1	1	MAP4K4|ENST00000425019|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP4K4|ENST00000425019|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	0	6	2	32	19	32	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139307	2	102497875	A	AT	540	PASS	MAP4K4	ENST00000425019	r.?	-	-	Ins	intronic	I	102497875	102497884	1	24	478.532	-	-	8	1	1	MAP4K4|ENST00000425019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAP4K4|ENST00000425019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	7	2	10	4	32	20	33	20	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139367	2	102771179	CA	C	300	PASS	IL1R1	CCDS2055.1	r.?	-	-	Del	intronic	D	102771179	102771186	1	10	269.196	-	-	6	1	1	IL1R1|CCDS2055.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IL1R1|CCDS2055.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	2	4	22	26	22	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139550	2	103545120	CA	C	300	PASS	-	-	-	-	-	Del	-	D	103545120	103545126	1	6	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	0	5	0	6	15	29	15	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139606	2	103792655	CT	C	360	PASS	-	-	-	-	-	Del	-	D	103792655	103792664	1	12	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	1	5	2	5	15	27	15	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139679	2	104147902	AT	A	420	PASS	-	-	-	-	-	Del	-	D	104147902	104147908	1	18	376.272	-	-	5	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	2	5	2	8	17	21	17	21	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139685	2	104161654	AT	A	300	PASS	-	-	-	-	-	Del	-	D	104161654	104161664	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	2	4	7	12	7	12	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139713	2	104300056	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	104300056	104300062	1	10	266.186	-	-	5	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	5	1	17	9	17	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139763	2	104549681	T	TCA	300	PASS	-	-	-	-	-	Ins	-	I	104549681	104549691	2	6	263.175	-	-	4	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	0	5	1	19	17	19	18	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139813	2	104832595	CA	C	300	PASS	-	-	-	-	-	Del	-	D	104832595	104832604	1	12	268.594	-	-	8	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	3	2	3	6	24	24	24	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139815	2	104836145	CA	C	420	PASS	-	-	-	-	-	Del	-	D	104836145	104836155	1	8	376.272	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	0	7	0	9	0	28	0	28	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139862	2	104963082	CA	C	300	PASS	-	-	-	-	-	Del	-	D	104963082	104963092	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	5	1	22	22	22	22	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139901	2	105070563	AT	A	420	PASS	-	-	-	-	-	Del	-	D	105070563	105070572	1	20	375.67	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	3	4	4	6	21	24	21	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139944	2	105310912	TA	T	300	PASS	-	-	-	-	-	Del	-	D	105310912	105310920	1	10	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	1	5	4	20	9	20	9	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139997	2	105497784	TA	T	480	PASS	-	-	-	-	-	Del	-	D	105497784	105497792	1	25	428.305	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	4	4	18	12	18	12	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760139998	2	105501506	CA	C	300	PASS	-	-	-	-	-	Del	-	D	105501506	105501514	1	10	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	4	1	4	1	28	23	28	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140013	2	105561321	CT	C	300	PASS	-	-	-	-	-	Del	-	D	105561321	105561331	1	12	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	2	3	3	5	30	37	30	37	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140125	2	105965882	A	AT	300	PASS	C2orf49	CCDS2068.1	r.?	-	-	Ins	downstream	I	105965882	105965891	1	10	266.186	-	-	8	1	1	C2orf49|CCDS2068.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	C2orf49|CCDS2068.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	7	17	7	17	0	0	./.	1	4	2	4	32	18	32	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140131	2	105982685	A	AT	300	PASS	FHL2	CCDS2070.1	r.?	-	-	Ins	intronic	I	105982685	105982686	1	10	258.359	-	-	0	1	1	FHL2|CCDS2070.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FHL2|CCDS2070.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	1	5	2	20	12	20	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140204	2	106156268	TA	T	300	PASS	-	-	-	-	-	Del	-	D	106156268	106156276	1	6	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	0	9	0	25	16	25	16	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140443	2	106781979	AT	A	300	PASS	UXS1	CCDS46378.1	r.?	-	-	Del	intronic	D	106781979	106781989	1	10	269.196	-	-	9	1	1	UXS1|CCDS46378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UXS1|CCDS46378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	8	1	27	25	27	25	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140606	2	107186582	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	107186582	107186591	1	12	266.186	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	10	0	0	./.	3	2	4	3	28	21	28	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140613	2	107195819	CA	C	420	PASS	-	-	-	-	-	Del	-	D	107195819	107195827	1	18	374.466	-	-	7	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	2	5	3	5	40	37	40	37	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140655	2	107264660	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	107264660	107264668	1	30	479.134	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	13	15	0	0	./.	4	5	5	6	31	40	32	40	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140786	2	107913258	G	GT	286	PASS	-	-	-	-	-	Ins	-	I	107913258	107913266	1	20	370.854	-	-	7	1	1	-	-	./.	0	0	0	0	9	18	9	19	0	0	./.	4	3	5	5	24	35	24	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760140944	2	108611047	GA	G	360	PASS	SLC5A7	CCDS2074.1	r.?	-	-	Del	intronic	D	108611047	108611057	1	12	321.831	-	-	9	1	1	SLC5A7|CCDS2074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC5A7|CCDS2074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	5	1	5	3	30	27	30	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141225	2	109424484	G	GT	600	PASS	CCDC138	CCDS2080.1	r.?	-	-	Ins	intronic	I	109424484	109424491	1	27	530.565	-	-	6	1	1	CCDC138|CCDS2080.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC138|CCDS2080.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	8	3	9	32	31	32	31	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141600	2	110943096	AC	A	300	PASS	NPHP1	CCDS2086.1	r.?	-	-	Del	intronic	D	110943096	110943102	1	12	269.196	-	-	5	1	1	NPHP1|CCDS2086.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPHP1|CCDS2086.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	2	3	2	4	20	28	20	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141643	2	111420856	CA	C	360	PASS	BUB1	CCDS33273.1	r.?	-	-	Del	intronic	D	111420856	111420866	1	16	323.035	-	-	9	1	1	BUB1|CCDS33273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BUB1|CCDS33273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	3	4	5	26	28	26	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141671	2	111559793	T	TC	360	PASS	ACOXL	CCDS42730.1	r.?	-	-	Ins	intronic	I	111559793	111559802	1	15	319.423	-	-	8	1	1	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	2	5	4	27	28	27	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141709	2	111680896	CT	C	480	PASS	ACOXL	CCDS42730.1	r.?	-	-	Del	intronic	D	111680896	111680906	1	25	430.112	-	-	9	1	1	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	4	6	7	27	23	27	23	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141752	2	111786724	TAAG	T	389	PASS	ACOXL	CCDS42730.1	r.?	-	-	Del	intronic	D	111786724	111786731	3	8	375.67	-	-	2	1	1	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	0	7	2	8	32	36	32	36	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760141773	2	111858828	CA	C	420	PASS	ACOXL	CCDS46389.1	r.?	-	-	Del	intronic	D	111858828	111858838	1	20	376.874	-	-	9	1	1	ACOXL|CCDS46389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOXL|CCDS46389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	3	5	5	30	26	30	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142006	2	112749813	CT	C	480	PASS	MERTK	CCDS2094.1	r.?	-	-	Del	intronic	D	112749813	112749820	1	24	430.112	-	-	6	1	1	MERTK|CCDS2094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MERTK|CCDS2094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	4	6	22	27	22	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142053	2	112874268	TC	T	300	PASS	TMEM87B	CCDS33275.1	r.2586delC	c.?	p.?	Del	3'UTR variant	D	112874268	112874276	1	12	269.196	-	-	7	1	1	TMEM87B|CCDS33275.1|r.2586delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TMEM87B|CCDS33275.1|r.2586delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	4	3	22	20	22	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142087	2	113019739	CA	C	420	PASS	-	-	-	-	-	Del	-	D	113019739	113019749	1	20	376.272	-	-	9	1	1	-	-	./.	0	0	0	0	11	24	11	24	0	0	./.	4	3	4	3	20	24	20	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142208	2	113407595	AT	A	540	PASS	SLC20A1	CCDS2099.1	r.?	-	-	Del	intronic	D	113407595	113407605	1	24	483.951	-	-	9	1	1	SLC20A1|CCDS2099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC20A1|CCDS2099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	7	2	9	2	30	20	30	20	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142252	2	113509219	CT	C	300	PASS	CKAP2L	CCDS2100.1	r.?	-	-	Del	intronic	D	113509219	113509228	1	12	269.196	-	-	8	1	1	CKAP2L|CCDS2100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CKAP2L|CCDS2100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	2	3	7	14	7	14	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142417	2	114017611	CT	C	360	PASS	PAX8	CCDS46398.1	r.?	-	-	Del	intronic	D	114017611	114017621	1	15	322.433	-	-	9	1	1	PAX8|CCDS46398.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAX8|CCDS46398.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	2	4	4	5	27	26	27	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142422	2	114031883	CT	C	449	PASS	PAX8	CCDS46398.1	r.?	-	-	Del	intronic	D	114031883	114031893	1	21	430.714	-	-	9	1	1	PAX8|CCDS46398.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAX8|CCDS46398.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	6	3	9	22	29	22	29	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760142751	2	115031179	CA	C	540	PASS	-	-	-	-	-	Del	-	D	115031179	115031189	1	10	482.747	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	9	0	9	1	22	20	22	20	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143202	2	116683789	AT	A	360	PASS	-	-	-	-	-	Del	-	D	116683789	116683797	1	15	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	4	2	5	2	24	26	24	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143238	2	116835802	T	TAC	420	PASS	-	-	-	-	-	Ins	-	I	116835802	116835821	2	20	366.639	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	12	14	0	0	./.	4	3	6	3	33	25	34	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143317	2	117092174	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	117092174	117092180	1	30	476.124	-	-	5	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	5	4	7	7	45	23	45	24	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143319	2	117100418	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	117100418	117100426	1	18	372.66	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	2	5	2	7	7	28	7	28	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143462	2	117712255	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	117712255	117712264	1	14	372.058	-	-	8	1	1	-	-	./.	0	0	0	0	16	13	16	14	0	0	./.	1	6	1	6	10	19	10	19	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143503	2	117885186	GA	G	360	PASS	-	-	-	-	-	Del	-	D	117885186	117885196	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	4	2	22	14	22	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143576	2	118176411	AT	A	449	PASS	-	-	-	-	-	Del	-	D	118176411	118176419	1	24	428.907	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	3	6	3	23	34	23	34	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143584	2	118215170	GT	G	418	PASS	-	-	-	-	-	Del	-	D	118215170	118215180	1	24	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	5	3	6	16	21	16	21	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143720	2	118705842	TA	T	300	PASS	CCDC93	CCDS2121.2	r.?	-	-	Del	intronic	D	118705842	118705849	1	12	267.992	-	-	6	1	1	CCDC93|CCDS2121.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC93|CCDS2121.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	2	3	36	28	36	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143763	2	118857026	CT	C	480	PASS	INSIG2	CCDS2122.1	r.?	-	-	Del	intronic	D	118857026	118857035	1	21	430.714	-	-	8	1	1	INSIG2|CCDS2122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INSIG2|CCDS2122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	6	2	6	16	24	16	24	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143772	2	118884919	CT	C	277	PASS	-	-	-	-	-	Del	-	D	118884919	118884929	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	5	6	32	26	32	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143885	2	119346094	TC	T	480	PASS	-	-	-	-	-	Del	-	D	119346094	119346099	1	9	430.714	-	-	4	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	0	8	0	8	0	34	0	34	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760143925	2	119527272	TA	T	420	PASS	-	-	-	-	-	Del	-	D	119527272	119527282	1	14	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	1	6	2	24	27	24	27	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144025	2	119898246	TG	T	600	PASS	-	-	-	-	-	Del	-	D	119898246	119898254	1	35	538.392	-	-	7	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	6	4	8	25	33	25	33	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144148	2	120271534	A	AT	480	PASS	SCTR	CCDS2127.1	r.?	-	-	Ins	intronic	I	120271534	120271541	1	24	424.693	-	-	6	1	1	SCTR|CCDS2127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCTR|CCDS2127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	6	4	34	28	34	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144257	2	120615109	C	CA	300	PASS	PTPN4	CCDS2129.1	r.?	-	-	Ins	intronic	I	120615109	120615118	1	10	264.38	-	-	8	1	1	PTPN4|CCDS2129.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPN4|CCDS2129.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	5	14	5	0	0	./.	4	1	5	2	16	14	17	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144396	2	121149844	C	CT	327	PASS	-	-	-	-	-	Ins	-	I	121149844	121149848	1	18	372.66	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	5	3	6	33	28	33	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144448	2	121360887	AT	A	300	PASS	-	-	-	-	-	Del	-	D	121360887	121360896	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	4	1	5	2	33	7	33	7	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144557	2	121727287	GC	G	360	PASS	GLI2	CCDS33283.1	r.?	-	-	Del	intronic	D	121727287	121727293	1	15	322.433	-	-	5	1	1	GLI2|CCDS33283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLI2|CCDS33283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	4	2	5	3	25	23	25	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144637	2	121986922	C	CT	360	PASS	TFCP2L1	CCDS2134.1	r.?	-	-	Ins	intronic	I	121986922	121986929	1	7	319.423	-	-	6	1	1	TFCP2L1|CCDS2134.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TFCP2L1|CCDS2134.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	0	6	1	7	18	27	18	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144671	2	122127409	AT	A	420	PASS	CLASP1	ENST00000263710	r.?	-	-	Del	intronic	D	122127409	122127419	1	8	376.874	-	-	9	1	1	CLASP1|ENST00000263710|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLASP1|ENST00000263710|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	7	0	8	0	32	11	32	11	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144679	2	122173747	TA	T	300	PASS	CLASP1	ENST00000263710	r.?	-	-	Del	intronic	D	122173747	122173756	1	6	269.196	-	-	8	1	1	CLASP1|ENST00000263710|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLASP1|ENST00000263710|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	5	0	6	0	36	14	36	14	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144713	2	122368088	AGAG	A	269	PASS	ENSG00000228632	ENST00000417150	r.151_153delGAG	c.151_153delGAG	p.E55delE	Del	inframe	D	122368088	122368104	3	12	258.359	-	-	5	1	1	ENSG00000228632|ENST00000417150|r.151_153delGAG|c.151_153delGAG|p.E55delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	ENSG00000228632|ENST00000417150|r.151_153delGAG|c.151_153delGAG|p.E55delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	4	7	24	38	24	38	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144716	2	122382315	G	GT	360	PASS	CLASP1	ENST00000263710	r.?	-	-	Ins	intronic	I	122382315	122382323	1	15	319.423	-	-	7	1	1	CLASP1|ENST00000263710|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CLASP1|ENST00000263710|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	15	7	15	0	0	./.	2	4	6	5	26	25	27	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144790	2	122632372	CT	C	420	PASS	-	-	-	-	-	Del	-	D	122632372	122632382	1	18	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	5	3	6	13	21	13	21	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760144994	2	123388423	GA	G	480	PASS	-	-	-	-	-	Del	-	D	123388423	123388433	1	21	430.112	-	-	9	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	6	2	8	4	26	27	26	27	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145014	2	123464661	TA	T	360	PASS	-	-	-	-	-	Del	-	D	123464661	123464670	1	16	322.433	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	3	4	3	30	23	30	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145071	2	123707905	GT	G	329	PASS	-	-	-	-	-	Del	-	D	123707905	123707915	1	7	322.433	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	0	6	2	7	11	27	11	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145195	2	124093834	AT	A	540	PASS	-	-	-	-	-	Del	-	D	124093834	124093843	1	24	484.553	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	7	2	8	2	30	19	30	19	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145277	2	124362042	GA	G	300	PASS	-	-	-	-	-	Del	-	D	124362042	124362051	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	3	2	4	5	25	26	25	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145336	2	124569456	TA	T	300	PASS	-	-	-	-	-	Del	-	D	124569456	124569462	1	12	267.992	-	-	5	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	4	2	25	18	25	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145408	2	124853084	TA	T	329	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	124853084	124853094	1	16	323.035	-	-	9	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	4	3	29	23	29	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145477	2	125128552	C	CA	420	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Ins	intronic	I	125128552	125128561	1	20	372.66	-	-	8	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	4	3	5	21	35	21	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145508	2	125290642	AC	A	360	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	125290642	125290649	1	15	323.035	-	-	6	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	4	3	6	23	19	23	19	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145604	2	125570634	GT	G	300	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	125570634	125570643	1	6	267.992	-	-	8	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	0	5	3	8	33	31	33	31	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145666	2	125790922	AT	A	457	PASS	-	-	-	-	-	Del	-	D	125790922	125790932	1	21	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	6	2	7	5	22	36	22	36	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145770	2	126335811	AT	A	360	PASS	-	-	-	-	-	Del	-	D	126335811	126335820	1	7	322.433	-	-	8	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	6	0	6	0	28	3	28	3	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145784	2	126401628	GT	G	600	PASS	-	-	-	-	-	Del	-	D	126401628	126401635	1	36	538.392	-	-	6	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	5	5	8	31	38	31	38	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760145796	2	126448324	GA	G	300	PASS	-	-	-	-	-	Del	-	D	126448324	126448333	1	12	268.594	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	2	3	20	24	20	24	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146117	2	127930643	GA	G	300	PASS	-	-	-	-	-	Del	-	D	127930643	127930652	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	1	4	5	5	25	21	25	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146206	2	128123671	TC	T	420	PASS	MAP3K2	CCDS46404.1	r.?	-	-	Del	intronic	D	128123671	128123674	1	20	376.874	-	-	2	1	1	MAP3K2|CCDS46404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP3K2|CCDS46404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	4	6	5	36	35	36	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146276	2	128356866	GT	G	360	PASS	MYO7B	CCDS46405.1	r.?	-	-	Del	intronic	D	128356866	128356875	1	15	323.035	-	-	8	1	1	MYO7B|CCDS46405.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO7B|CCDS46405.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	2	4	3	5	29	20	29	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146287	2	128424872	G	GA	300	PASS	LIMS2	CCDS2147.1	r.?	-	-	Ins	upstream	I	128424872	128424880	1	10	265.584	-	-	7	1	1	LIMS2|CCDS2147.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	LIMS2|ENST00000409455|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	1	6	27	28	27	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146326	2	128596342	CA	C	329	PASS	-	-	-	-	-	Del	-	D	128596342	128596351	1	12	318.219	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	1	5	3	6	22	27	22	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146331	2	128608836	T	TA	360	PASS	POLR2D	CCDS2151.1	r.?	-	-	Ins	intronic	I	128608836	128608844	1	12	318.821	-	-	7	1	1	POLR2D|CCDS2151.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POLR2D|CCDS2151.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	5	1	7	2	25	15	25	15	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146541	2	129195320	AT	A	360	PASS	-	-	-	-	-	Del	-	D	129195320	129195330	1	16	322.433	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	4	3	24	24	24	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146763	2	129843014	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	129843014	129843017	1	25	425.897	-	-	2	1	1	-	-	./.	0	0	0	0	18	13	18	14	0	0	./.	4	4	5	5	25	15	25	15	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146784	2	129927619	GA	G	480	PASS	-	-	-	-	-	Del	-	D	129927619	129927628	1	25	430.714	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	5	4	21	29	21	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146836	2	130147461	AT	A	300	PASS	-	-	-	-	-	Del	-	D	130147461	130147470	1	10	266.788	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	6	1	17	26	17	26	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760146953	2	130541848	AT	A	480	PASS	-	-	-	-	-	Del	-	D	130541848	130541857	1	24	428.305	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	6	4	35	23	35	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760147345	2	132300201	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	132300201	132300210	1	12	319.423	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	5	1	6	1	19	15	20	15	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760147460	2	132618977	CT	C	252	PASS	-	-	-	-	-	Del	-	D	132618977	132618987	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	4	37	20	37	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760147657	2	132881656	GT	G	260	PASS	-	-	-	-	-	Del	-	D	132881656	132881665	1	12	269.196	-	-	8	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	2	3	26	29	26	29	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148185	2	133360889	TA	T	329	PASS	GPR39	CCDS2170.1	r.?	-	-	Del	intronic	D	133360889	133360898	1	15	323.035	-	-	8	1	1	GPR39|CCDS2170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR39|CCDS2170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	4	2	5	16	20	16	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148221	2	133498434	GA	G	300	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Del	intronic	D	133498434	133498444	1	10	268.594	-	-	9	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	1	6	1	28	12	28	12	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148365	2	134123715	A	AT	420	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Ins	intronic	I	134123715	134123724	1	8	372.66	-	-	8	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	0	7	0	10	17	35	17	35	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148460	2	134586602	GA	G	360	PASS	-	-	-	-	-	Del	-	D	134586602	134586609	1	12	323.035	-	-	6	1	1	-	-	./.	0	0	0	0	8	2	8	2	0	0	./.	5	1	7	1	25	3	25	3	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148535	2	134764369	CA	C	420	PASS	-	-	-	-	-	Del	-	D	134764369	134764377	1	20	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	4	4	4	32	28	32	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148699	2	135241799	GA	G	540	PASS	TMEM163	CCDS2172.1	r.?	-	-	Del	intronic	D	135241799	135241809	1	30	484.553	-	-	9	1	1	TMEM163|CCDS2172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM163|CCDS2172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	23	7	23	0	0	./.	5	4	6	4	27	24	27	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148915	2	135920280	AATTT	A	300	PASS	RAB3GAP1	CCDS33294.1	r.?	-	-	Del	intronic	D	135920280	135920290	4	10	269.196	-	-	2	1	1	RAB3GAP1|CCDS33294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3GAP1|CCDS33294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	1	16	9	16	9	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760148998	2	136194008	C	CA	420	PASS	ZRANB3	CCDS46419.1	r.?	-	-	Ins	intronic	I	136194008	136194014	1	14	372.66	-	-	5	1	1	ZRANB3|CCDS46419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZRANB3|CCDS46419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	6	1	8	2	24	31	24	32	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149362	2	137284862	TC	T	420	PASS	-	-	-	-	-	Del	-	D	137284862	137284868	1	20	376.874	-	-	5	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	4	4	5	34	34	34	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149383	2	137379728	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	137379728	137379735	1	18	479.134	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	8	1	11	4	43	20	43	21	11	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149467	2	137635008	GA	G	480	PASS	THSD7B	ENST00000409968	r.?	-	-	Del	intronic	D	137635008	137635016	1	21	428.907	-	-	7	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	6	2	7	22	27	22	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149625	2	138082089	C	CA	300	PASS	THSD7B	ENST00000409968	r.?	-	-	Ins	intronic	I	138082089	138082099	1	6	265.584	-	-	9	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	0	5	2	8	17	29	17	29	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149704	2	138375607	GT	G	360	PASS	THSD7B	ENST00000409968	r.?	-	-	Del	intronic	D	138375607	138375614	1	15	323.035	-	-	6	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	2	5	4	31	28	31	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149756	2	138473693	GC	G	412	PASS	-	-	-	-	-	Del	-	D	138473693	138473699	1	18	374.466	-	-	5	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	2	5	2	25	23	25	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149925	2	139070063	GA	G	360	PASS	-	-	-	-	-	Del	-	D	139070063	139070073	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	4	4	29	24	29	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760149956	2	139206995	TA	T	360	PASS	-	-	-	-	-	Del	-	D	139206995	139207004	1	15	321.229	-	-	8	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	4	2	6	3	24	14	24	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150028	2	139459891	A	AT	300	PASS	NXPH2	CCDS46421.1	r.?	-	-	Ins	intronic	I	139459891	139459896	1	12	266.186	-	-	4	1	1	NXPH2|CCDS46421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NXPH2|CCDS46421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	3	3	26	21	26	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150170	2	139968584	TA	T	329	PASS	-	-	-	-	-	Del	-	D	139968584	139968593	1	20	373.262	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	3	7	20	27	20	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150192	2	140037125	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	140037125	140037132	1	12	264.982	-	-	6	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	2	3	2	3	19	23	19	24	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150195	2	140045165	GA	G	300	PASS	-	-	-	-	-	Del	-	D	140045165	140045174	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	4	4	26	14	26	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150376	2	140630394	CA	C	420	PASS	-	-	-	-	-	Del	-	D	140630394	140630401	1	18	373.262	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	4	7	25	30	25	30	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150383	2	140659777	CT	C	360	PASS	-	-	-	-	-	Del	-	D	140659777	140659786	1	16	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150453	2	140854158	AT	A	300	PASS	-	-	-	-	-	Del	-	D	140854158	140854166	1	10	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	1	4	1	4	4	18	4	18	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150455	2	140861931	GT	G	298	PASS	-	-	-	-	-	Del	-	D	140861931	140861940	1	7	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	0	6	0	6	5	21	5	21	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150540	2	141125642	TA	T	300	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141125642	141125650	1	10	269.196	-	-	7	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	1	4	1	7	8	26	8	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150597	2	141385944	C	CA	420	PASS	LRP1B	CCDS2182.1	r.?	-	-	Ins	intronic	I	141385944	141385953	1	20	357.006	-	-	8	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	18	7	0	0	./.	3	4	3	5	23	27	23	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150655	2	141585673	CA	C	387	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141585673	141585683	1	24	430.112	-	-	9	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	5	4	6	22	24	22	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150757	2	141866892	CTCTT	C	480	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141866892	141866898	4	25	430.714	-	-	1	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	4	4	4	4	19	32	19	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760150873	2	142153721	CA	C	509	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	142153721	142153730	1	30	484.553	-	-	8	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	5	5	6	24	33	24	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151027	2	142479034	GT	G	300	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	142479034	142479042	1	10	269.196	-	-	7	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	4	1	4	1	16	23	16	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151052	2	142532882	A	AT	360	PASS	LRP1B	CCDS2182.1	r.?	-	-	Ins	intronic	I	142532882	142532888	1	16	319.423	-	-	5	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	13	10	0	0	./.	3	3	3	4	29	21	29	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151093	2	142663832	C	CA	360	PASS	LRP1B	CCDS2182.1	r.?	-	-	Ins	intronic	I	142663832	142663842	1	16	318.821	-	-	9	1	-	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	3	3	7	2	28	23	28	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151334	2	143634231	TA	T	480	PASS	KYNU	CCDS2183.1	r.?	-	-	Del	upstream	D	143634231	143634240	1	21	430.714	-	-	8	1	1	KYNU|CCDS2183.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KYNU|CCDS2183.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	9	16	9	0	0	./.	2	6	3	7	25	26	25	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151371	2	143775731	A	AT	420	PASS	KYNU	CCDS2183.1	r.?	-	-	Ins	intronic	I	143775731	143775737	1	20	372.66	-	-	5	1	1	KYNU|CCDS2183.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KYNU|CCDS2183.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	4	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151437	2	144095308	TA	T	600	PASS	ARHGAP15	CCDS2184.1	r.?	-	-	Del	intronic	D	144095308	144095318	1	32	538.392	-	-	9	1	1	ARHGAP15|CCDS2184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP15|CCDS2184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	7	4	8	22	35	22	35	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151442	2	144103132	AT	A	540	PASS	ARHGAP15	CCDS2184.1	r.?	-	-	Del	intronic	D	144103132	144103142	1	30	483.951	-	-	9	1	1	ARHGAP15|CCDS2184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP15|CCDS2184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	5	5	5	30	22	30	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151544	2	144404605	CA	C	360	PASS	ARHGAP15	CCDS2184.1	r.?	-	-	Del	intronic	D	144404605	144404613	1	15	321.831	-	-	7	1	1	ARHGAP15|CCDS2184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP15|CCDS2184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	4	4	6	27	26	27	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151684	2	144980217	CA	C	291	PASS	GTDC1	CCDS33300.1	r.?	-	-	Del	intronic	D	144980217	144980226	1	16	322.433	-	-	8	1	1	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	3	30	18	30	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151685	2	144994464	TG	T	360	PASS	GTDC1	CCDS33300.1	r.?	-	-	Del	intronic	D	144994464	144994469	1	12	323.035	-	-	4	1	1	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	1	5	3	5	25	21	25	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151702	2	145075378	CT	C	569	PASS	GTDC1	ENST00000417450	r.?	-	-	Del	intronic	D	145075378	145075388	1	32	538.392	-	-	9	1	1	GTDC1|ENST00000417450|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GTDC1|ENST00000417450|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	7	5	8	15	20	15	20	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151716	2	145142962	AT	A	360	PASS	ZEB2	CCDS2186.1	r.?	-	-	Del	downstream	D	145142962	145142969	1	7	323.035	-	-	6	1	1	ZEB2|CCDS2186.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZEB2|CCDS2186.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	21	16	21	16	0	0	./.	6	0	7	0	28	4	28	4	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760151956	2	145915684	CA	C	360	PASS	-	-	-	-	-	Del	-	D	145915684	145915693	1	15	322.433	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	6	2	31	21	31	21	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152052	2	146389577	CTATT	C	300	PASS	-	-	-	-	-	Del	-	D	146389577	146389583	4	12	269.196	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	2	28	19	28	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152181	2	146898664	AT	A	269	PASS	-	-	-	-	-	Del	-	D	146898664	146898673	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	1	4	1	5	25	20	25	20	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152228	2	147102625	AT	A	360	PASS	-	-	-	-	-	Del	-	D	147102625	147102634	1	12	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	5	1	7	7	24	7	24	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152233	2	147134555	GT	G	480	PASS	-	-	-	-	-	Del	-	D	147134555	147134565	1	25	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	4	12	4	12	0	0	./.	4	4	5	4	39	33	39	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152398	2	147892998	GT	G	420	PASS	-	-	-	-	-	Del	-	D	147892998	147893004	1	20	376.874	-	-	5	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	3	4	6	5	23	35	23	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152466	2	148260972	AT	A	420	PASS	-	-	-	-	-	Del	-	D	148260972	148260982	1	18	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	5	2	8	17	23	17	23	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152563	2	148572967	TA	T	300	PASS	-	-	-	-	-	Del	-	D	148572967	148572976	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	5	6	20	26	20	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152604	2	148700367	AC	A	360	PASS	ORC4L	CCDS2187.1	r.?	-	-	Del	intronic	D	148700367	148700370	1	12	321.229	-	-	2	1	1	ORC4L|CCDS2187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ORC4L|CCDS2187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	1	5	1	7	5	28	5	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152676	2	148935724	CT	C	300	PASS	MBD5	CCDS33302.1	r.?	-	-	Del	intronic	D	148935724	148935734	1	12	269.196	-	-	9	1	1	MBD5|CCDS33302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MBD5|CCDS33302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	5	17	25	17	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760152764	2	149176943	ATTC	A	269	PASS	MBD5	CCDS33302.1	r.?	-	-	Del	intronic	D	149176943	149176951	3	12	269.196	-	-	2	1	1	MBD5|CCDS33302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MBD5|CCDS33302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	2	3	2	21	22	21	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153005	2	150129783	CA	C	269	PASS	-	-	-	-	-	Del	-	D	150129783	150129791	1	10	267.992	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	1	5	1	22	20	22	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153118	2	150511335	GA	G	360	PASS	-	-	-	-	-	Del	-	D	150511335	150511345	1	16	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	3	3	5	6	19	33	19	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153150	2	150578871	AT	A	540	PASS	-	-	-	-	-	Del	-	D	150578871	150578879	1	24	479.736	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	7	2	7	20	38	20	38	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153219	2	150748474	CT	C	360	PASS	-	-	-	-	-	Del	-	D	150748474	150748480	1	16	323.035	-	-	5	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	3	3	13	31	13	31	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153230	2	150767697	CA	C	300	PASS	-	-	-	-	-	Del	-	D	150767697	150767705	1	10	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	1	7	1	35	19	35	19	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153489	2	151784482	GA	G	420	PASS	-	-	-	-	-	Del	-	D	151784482	151784491	1	20	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	4	3	6	26	21	26	21	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153540	2	151932626	TA	T	300	PASS	-	-	-	-	-	Del	-	D	151932626	151932633	1	12	269.196	-	-	6	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	2	5	2	33	26	33	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153549	2	151943133	AT	A	300	PASS	-	-	-	-	-	Del	-	D	151943133	151943141	1	10	268.594	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	1	4	2	5	20	30	20	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153579	2	152003889	CT	C	540	PASS	-	-	-	-	-	Del	-	D	152003889	152003897	1	18	479.736	-	-	7	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	8	1	9	3	28	24	28	24	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153663	2	152186375	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	152186375	152186383	1	16	425.897	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	7	1	7	1	40	5	40	5	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153823	2	152760604	GA	G	360	PASS	CACNB4	CCDS46428.1	r.?	-	-	Del	intronic	D	152760604	152760612	1	16	321.831	-	-	7	1	1	CACNB4|CCDS46428.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNB4|CCDS46428.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	3	3	3	3	24	25	24	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153897	2	152938178	CA	C	300	PASS	CACNB4	CCDS46426.1	r.?	-	-	Del	intronic	D	152938178	152938183	1	6	269.196	-	-	4	1	1	CACNB4|CCDS46426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNB4|CCDS46426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	5	0	5	0	19	22	19	22	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153903	2	152960654	TA	T	420	PASS	-	-	-	-	-	Del	-	D	152960654	152960663	1	20	376.272	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	8	22	35	22	35	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153935	2	153042850	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	153042850	153042858	1	12	266.186	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	7	3	34	10	35	10	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153943	2	153077774	AT	A	420	PASS	-	-	-	-	-	Del	-	D	153077774	153077782	1	20	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	4	3	6	4	40	29	40	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760153956	2	153114650	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	153114650	153114670	2	7	321.831	-	-	9	1	-	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	6	0	6	0	27	14	27	14	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154265	2	153972702	GTA	G	480	PASS	-	-	-	-	-	Del	-	D	153972702	153972714	2	21	430.714	-	-	5	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	6	3	6	20	17	20	17	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154302	2	154096298	CT	C	360	PASS	-	-	-	-	-	Del	-	D	154096298	154096308	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	2	8	2	34	17	34	17	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154353	2	154314158	TA	T	300	PASS	-	-	-	-	-	Del	-	D	154314158	154314167	1	6	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	0	8	0	42	9	42	9	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154420	2	154549504	TA	T	360	PASS	-	-	-	-	-	Del	-	D	154549504	154549512	1	15	322.433	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	4	5	4	38	23	38	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154421	2	154550462	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	154550462	154550472	1	12	319.423	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	5	3	30	18	31	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154626	2	155230441	AT	A	720	PASS	GALNT13	CCDS2199.1	r.?	-	-	Del	intronic	D	155230441	155230448	1	49	646.07	-	-	6	1	1	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	6	6	7	7	23	31	23	31	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154689	2	155453466	AT	A	300	PASS	-	-	-	-	-	Del	-	D	155453466	155453475	1	12	267.992	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	3	3	17	22	17	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154741	2	155677720	A	AT	300	PASS	KCNJ3	CCDS2200.1	r.?	-	-	Ins	intronic	I	155677720	155677728	1	12	266.186	-	-	7	1	1	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	3	3	25	24	25	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154817	2	155944649	GT	G	420	PASS	-	-	-	-	-	Del	-	D	155944649	155944658	1	20	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	3	4	3	24	12	24	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154846	2	156130098	GT	G	300	PASS	-	-	-	-	-	Del	-	D	156130098	156130108	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	5	21	5	21	0	0	./.	3	2	4	4	20	26	20	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154922	2	156466124	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	156466124	156466133	1	12	319.423	-	-	8	1	1	-	-	./.	0	0	0	0	12	19	12	20	0	0	./.	1	5	2	6	12	35	12	35	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760154970	2	156679403	CA	C	420	PASS	-	-	-	-	-	Del	-	D	156679403	156679413	1	14	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	6	1	7	1	27	17	27	17	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155034	2	156903600	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	156903600	156903607	1	32	532.371	-	-	6	1	1	-	-	./.	0	0	0	0	18	24	18	25	0	0	./.	7	3	9	5	31	38	31	39	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155133	2	157274950	TA	T	300	PASS	-	-	-	-	-	Del	-	D	157274950	157274959	1	12	268.594	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	4	11	22	11	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155162	2	157341007	GT	G	360	PASS	GPD2	CCDS2202.1	r.?	-	-	Del	intronic	D	157341007	157341016	1	12	323.035	-	-	8	1	1	GPD2|CCDS2202.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPD2|CCDS2202.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	1	5	1	27	13	27	13	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155254	2	157636806	GT	G	269	PASS	-	-	-	-	-	Del	-	D	157636806	157636816	1	12	266.788	-	-	9	1	-	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	3	3	20	25	20	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155259	2	157641110	CT	C	480	PASS	-	-	-	-	-	Del	-	D	157641110	157641119	1	25	430.714	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	4	4	5	7	26	7	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155267	2	157689513	AC	A	420	PASS	-	-	-	-	-	Del	-	D	157689513	157689522	1	20	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	3	4	26	16	26	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155334	2	157878930	AT	A	300	PASS	-	-	-	-	-	Del	-	D	157878930	157878940	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	4	4	30	22	30	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155353	2	157990185	GA	G	300	PASS	-	-	-	-	-	Del	-	D	157990185	157990194	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	3	4	30	28	30	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155614	2	159107275	AT	A	277	PASS	CCDC148	CCDS33304.1	r.1565+8dela	c.1251+8dela	p.?	Del	splice region	D	159107275	159107282	1	12	269.196	-	-	6	1	1	CCDC148|CCDS33304.1|r.1565+8dela|c.1251+8dela|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	CCDC148|CCDS33304.1|r.1565+8dela|c.1251+8dela|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	3	34	32	34	32	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155935	2	159948492	GTA	G	360	PASS	TANC1	CCDS42766.1	r.?	-	-	Del	intronic	D	159948492	159948496	2	15	319.423	-	-	1	1	1	TANC1|CCDS42766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC1|CCDS42766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	3	5	16	30	16	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760155942	2	159957292	AT	A	480	PASS	TANC1	CCDS42766.1	r.?	-	-	Del	intronic	D	159957292	159957301	1	25	430.714	-	-	8	1	1	TANC1|CCDS42766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC1|CCDS42766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	4	4	6	5	27	26	27	26	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156228	2	160769371	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	160769371	160769385	2	12	269.196	-	-	6	1	-	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	4	4	24	15	24	15	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156243	2	160828894	TA	T	420	PASS	PLA2R1	CCDS33309.1	r.?	-	-	Del	intronic	D	160828894	160828901	1	18	376.874	-	-	6	1	1	PLA2R1|CCDS33309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLA2R1|CCDS33309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	5	2	5	17	22	17	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156281	2	160946570	CT	C	450	PASS	-	-	-	-	-	Del	-	D	160946570	160946578	1	21	430.714	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	6	3	6	25	28	25	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156323	2	161089970	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	161089970	161089979	1	12	266.186	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	2	4	3	28	28	28	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156463	2	161500002	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	161500002	161500008	1	20	372.66	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	9	5	22	38	22	39	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156749	2	162338866	CA	C	300	PASS	-	-	-	-	-	Del	-	D	162338866	162338875	1	6	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	5	0	11	3	30	19	30	19	11	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156897	2	163111099	AT	A	420	PASS	-	-	-	-	-	Del	-	D	163111099	163111107	1	20	376.272	-	-	7	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	4	3	5	5	28	28	28	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156913	2	163276588	C	CA	540	PASS	KCNH7	CCDS2219.1	r.?	-	-	Ins	intronic	I	163276588	163276596	1	28	478.532	-	-	7	1	1	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	6	5	6	29	24	29	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156914	2	163286549	CT	C	300	PASS	KCNH7	CCDS2219.1	r.?	-	-	Del	intronic	D	163286549	163286559	1	10	269.196	-	-	9	1	1	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	6	1	26	4	26	4	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760156935	2	163503251	CA	C	269	PASS	KCNH7	CCDS2219.1	r.?	-	-	Del	intronic	D	163503251	163503259	1	10	269.196	-	-	7	1	1	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	2	5	31	28	31	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157111	2	164376641	CT	C	300	PASS	-	-	-	-	-	Del	-	D	164376641	164376650	1	10	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	4	1	6	25	27	25	27	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157237	2	164964328	CT	C	480	PASS	-	-	-	-	-	Del	-	D	164964328	164964336	1	21	430.714	-	-	7	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	6	2	6	2	23	2	23	2	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157250	2	165016165	GT	G	420	PASS	-	-	-	-	-	Del	-	D	165016165	165016175	1	18	375.67	-	-	9	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	2	5	3	5	18	16	18	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157261	2	165054055	CT	C	300	PASS	-	-	-	-	-	Del	-	D	165054055	165054065	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	2	4	31	30	31	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157281	2	165151717	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	165151717	165151725	1	12	266.186	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	3	13	24	13	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157333	2	165367171	CA	C	329	PASS	GRB14	CCDS2222.1	r.?	-	-	Del	intronic	D	165367171	165367180	1	16	321.831	-	-	8	1	1	GRB14|CCDS2222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRB14|CCDS2222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	5	7	23	27	23	27	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157474	2	165873024	GT	G	420	PASS	-	-	-	-	-	Del	-	D	165873024	165873031	1	20	376.874	-	-	6	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	3	4	5	6	22	30	22	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760157519	2	166102869	GT	G	480	PASS	SCN2A	CCDS33314.1	r.?	-	-	Del	intronic	D	166102869	166102878	1	24	430.714	-	-	8	1	1	SCN2A|CCDS33314.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SCN2A|CCDS33314.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	5	4	5	33	29	33	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760158001	2	167586907	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	167586907	167586913	1	12	265.584	-	-	5	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	4	2	18	30	18	30	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760158048	2	167853910	CA	C	300	PASS	XIRP2	CCDS42769.1	r.?	-	-	Del	intronic	D	167853910	167853918	1	6	266.788	-	-	7	1	1	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	6	28	6	0	0	./.	5	0	6	1	27	22	27	22	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760158148	2	168236291	AG	A	300	PASS	-	-	-	-	-	Del	-	D	168236291	168236294	1	12	257.155	-	-	2	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	3	2	4	3	24	23	24	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760158331	2	168916635	TC	T	300	PASS	STK39	CCDS42770.1	r.?	-	-	Del	intronic	D	168916635	168916644	1	10	269.196	-	-	8	1	1	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	2	5	21	18	21	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760158627	2	169784976	G	GA	300	PASS	ABCB11	CCDS46444.1	r.?	-	-	Ins	intronic	I	169784976	169784986	1	10	266.186	-	-	9	1	1	ABCB11|CCDS46444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCB11|CCDS46444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	1	6	1	18	13	18	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760158702	2	170067517	AT	A	360	PASS	LRP2	CCDS2232.1	r.?	-	-	Del	intronic	D	170067517	170067525	1	15	322.433	-	-	7	1	1	LRP2|CCDS2232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP2|CCDS2232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	2	4	2	26	20	26	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760159074	2	170991818	GA	G	254	PASS	-	-	-	-	-	Del	-	D	170991818	170991820	1	12	267.992	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	3	2	5	21	31	21	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760159212	2	171334253	CA	C	720	PASS	MYO3B	CCDS42773.1	r.?	-	-	Del	intronic	D	171334253	171334258	1	48	641.254	-	-	4	1	1	MYO3B|CCDS42773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO3B|CCDS42773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	5	7	6	7	36	34	36	34	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760159349	2	171630243	CT	C	480	PASS	ENSG00000204334	ENST00000375280	r.?	-	-	Del	intronic	D	171630243	171630253	1	25	429.51	-	-	9	1	1	ENSG00000204334|ENST00000375280|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000204334|ENST00000375280|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	4	5	4	21	21	21	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760159409	2	171756803	CT	C	300	PASS	-	-	-	-	-	Del	-	D	171756803	171756812	1	6	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	0	5	1	6	7	23	7	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760159670	2	172354973	CT	C	569	PASS	-	-	-	-	-	Del	-	D	172354973	172354981	1	36	538.392	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	5	5	6	6	24	30	24	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760159811	2	172704093	CT	C	300	PASS	SLC25A12	CCDS33327.1	r.?	-	-	Del	intronic	D	172704093	172704102	1	6	269.196	-	-	8	1	1	SLC25A12|CCDS33327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A12|CCDS33327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	5	0	9	1	29	19	29	19	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160177	2	173753932	AT	A	360	PASS	RAPGEF4	CCDS42775.1	r.?	-	-	Del	intronic	D	173753932	173753942	1	15	323.035	-	-	9	1	1	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	2	4	3	4	21	22	21	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160339	2	174228064	CA	C	300	PASS	CDCA7	CCDS2252.1	r.599delA	c.496delA	p.A168fs*11	Del	frameshift	D	174228064	174228071	1	12	264.982	-	-	6	1	1	CDCA7|CCDS2252.1|r.599delA|c.496delA|p.A168fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CDCA7|CCDS2252.1|r.599delA|c.496delA|p.A168fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	5	3	34	19	34	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160345	2	174232024	GT	G	300	PASS	CDCA7	CCDS2252.1	r.?	-	-	Del	intronic	D	174232024	174232034	1	12	269.196	-	-	9	1	1	CDCA7|CCDS2252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDCA7|CCDS2252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	3	2	3	2	24	27	24	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160347	2	174238784	CT	C	300	PASS	-	-	-	-	-	Del	-	D	174238784	174238792	1	12	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	4	3	27	19	27	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160377	2	174327278	CT	C	480	PASS	-	-	-	-	-	Del	-	D	174327278	174327288	1	25	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	5	5	20	25	20	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160413	2	174509518	GA	G	300	PASS	-	-	-	-	-	Del	-	D	174509518	174509528	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	4	6	34	31	34	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160466	2	174699917	CA	C	360	PASS	-	-	-	-	-	Del	-	D	174699917	174699927	1	16	321.831	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	5	7	16	33	16	33	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160516	2	174861258	ACT	A	269	PASS	-	-	-	-	-	Del	-	D	174861258	174861268	2	12	269.196	-	-	4	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	2	3	3	4	27	24	27	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160555	2	174978314	TA	T	420	PASS	OLA1	CCDS2255.1	r.?	-	-	Del	intronic	D	174978314	174978324	1	8	376.874	-	-	9	1	1	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	7	0	9	0	24	8	24	8	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160685	2	175348747	TA	T	540	PASS	GPR155	CCDS2259.1	r.?	-	-	Del	intronic	D	175348747	175348753	1	30	484.553	-	-	5	1	1	GPR155|CCDS2259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GPR155|CCDS2259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	4	5	5	6	24	28	24	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160690	2	175358099	CT	C	420	PASS	-	-	-	-	-	Del	-	D	175358099	175358109	1	18	359.415	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	5	3	6	19	20	19	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160699	2	175372039	TGA	T	420	PASS	-	-	-	-	-	Del	-	D	175372039	175372052	2	18	376.874	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	5	2	7	26	20	26	20	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160788	2	175622345	A	AT	360	PASS	CHRNA1	CCDS33331.1	r.434_435insa	c.367_368insA	p.I123fs*17	Ins	frameshift	I	175622345	175622353	1	15	318.821	-	-	7	1	1	CHRNA1|CCDS33331.1|r.434_435insa|c.367_368insA|p.I123fs*17|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	CHRNA1|CCDS33331.1|r.434_435insa|c.367_368insA|p.I123fs*17|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	3	5	23	25	23	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760160992	2	176441081	AT	A	420	PASS	-	-	-	-	-	Del	-	D	176441081	176441090	1	14	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	6	1	8	1	26	22	26	22	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760161376	2	177767208	GA	G	300	PASS	-	-	-	-	-	Del	-	D	177767208	177767218	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	1	4	2	5	28	31	28	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760161701	2	178713235	GT	G	480	PASS	PDE11A	CCDS42786.1	r.?	-	-	Del	intronic	D	178713235	178713241	1	21	430.714	-	-	5	1	1	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	6	2	9	3	28	20	28	20	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760161805	2	179052150	GT	G	420	PASS	-	-	-	-	-	Del	-	D	179052150	179052160	1	20	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	3	5	4	22	12	22	12	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760161814	2	179083711	CT	C	329	PASS	OSBPL6	CCDS2277.1	r.?	-	-	Del	intronic	D	179083711	179083721	1	15	322.433	-	-	9	1	1	OSBPL6|CCDS2277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OSBPL6|CCDS2277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	4	2	4	25	24	25	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760161975	2	179770718	CT	C	360	PASS	CCDC141	ENST00000409284	r.?	-	-	Del	intronic	D	179770718	179770726	1	15	323.035	-	-	7	1	1	CCDC141|ENST00000409284|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC141|ENST00000409284|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	5	3	19	19	19	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162052	2	180061984	GA	G	339	PASS	SESTD1	CCDS33338.1	r.?	-	-	Del	intronic	D	180061984	180061994	1	24	425.295	-	-	9	1	1	SESTD1|CCDS33338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SESTD1|CCDS33338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	3	5	4	8	33	25	33	25	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162122	2	180293278	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	180293278	180293286	1	16	318.219	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	12	0	0	./.	3	3	6	3	29	31	29	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162128	2	180308472	G	GA	420	PASS	ZNF385B	CCDS33339.1	r.?	-	-	Ins	intronic	I	180308472	180308481	1	14	372.66	-	-	8	1	1	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	1	6	3	7	21	28	21	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162209	2	180632343	CA	C	300	PASS	ZNF385B	CCDS33339.1	r.?	-	-	Del	intronic	D	180632343	180632352	1	6	269.196	-	-	8	1	1	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	0	5	0	6	3	29	3	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162251	2	180809561	TA	T	420	PASS	CWC22	CCDS46465.1	r.?	-	-	Del	downstream	D	180809561	180809569	1	8	376.874	-	-	7	1	1	CWC22|CCDS46465.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	CWC22|CCDS46465.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	14	13	14	13	0	0	./.	0	7	1	7	17	18	17	18	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162256	2	180832566	G	GA	420	PASS	CWC22	CCDS46465.1	r.?	-	-	Ins	intronic	I	180832566	180832574	1	20	372.66	-	-	7	1	1	CWC22|CCDS46465.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CWC22|CCDS46465.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	4	3	6	24	37	24	39	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162377	2	181280251	CA	C	540	PASS	-	-	-	-	-	Del	-	D	181280251	181280260	1	30	484.553	-	-	8	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	4	5	5	25	23	25	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162387	2	181388689	AT	A	300	PASS	-	-	-	-	-	Del	-	D	181388689	181388699	1	10	267.39	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	8	5	38	20	38	20	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162452	2	181649771	CT	C	300	PASS	-	-	-	-	-	Del	-	D	181649771	181649779	1	12	267.992	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	5	4	26	21	26	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162704	2	182513133	CA	C	480	PASS	CERKL	CCDS46466.1	r.?	-	-	Del	intronic	D	182513133	182513143	1	24	429.51	-	-	9	1	1	CERKL|CCDS46466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CERKL|CCDS46466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	3	6	5	32	26	32	26	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162743	2	182741842	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	182741842	182741845	1	18	372.66	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	5	2	5	24	21	24	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162753	2	182854382	CT	C	540	PASS	PPP1R1C	CCDS46468.1	r.?	-	-	Del	intronic	D	182854382	182854392	1	28	484.553	-	-	9	1	1	PPP1R1C|CCDS46468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R1C|CCDS46468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	3	6	6	7	29	30	29	30	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162866	2	183221458	C	CA	272	PASS	PDE1A	CCDS2285.1	r.?	-	-	Ins	intronic	I	183221458	183221467	1	6	266.186	-	-	8	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	5	0	6	0	34	2	34	2	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162867	2	183225920	CTA	C	300	PASS	PDE1A	CCDS2285.1	r.?	-	-	Del	intronic	D	183225920	183225924	2	12	269.196	-	-	1	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	4	6	17	17	17	17	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162895	2	183338218	CT	C	300	PASS	PDE1A	CCDS2285.1	r.?	-	-	Del	intronic	D	183338218	183338226	1	10	269.196	-	-	7	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	4	1	5	2	24	29	24	29	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760162991	2	183621811	GA	G	480	PASS	DNAJC10	CCDS33345.1	r.?	-	-	Del	intronic	D	183621811	183621820	1	21	430.112	-	-	8	1	1	DNAJC10|CCDS33345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC10|CCDS33345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	6	2	6	2	19	23	19	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163021	2	183716741	GA	G	389	PASS	FRZB	CCDS2286.1	r.?	-	-	Del	intronic	D	183716741	183716750	1	20	376.874	-	-	8	1	1	FRZB|CCDS2286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRZB|CCDS2286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	3	6	6	27	24	27	24	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163029	2	183738939	TA	T	360	PASS	-	-	-	-	-	Del	-	D	183738939	183738947	1	12	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	1	5	1	6	27	37	27	37	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163054	2	183782986	AT	A	420	PASS	-	-	-	-	-	Del	-	D	183782986	183782995	1	14	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	6	1	8	1	30	26	30	26	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163093	2	183931685	GT	G	300	PASS	-	-	-	-	-	Del	-	D	183931685	183931695	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	4	1	19	16	19	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163147	2	184076409	CT	C	329	PASS	-	-	-	-	-	Del	-	D	184076409	184076419	1	16	320.627	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	3	3	3	22	5	22	5	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163166	2	184108913	CT	C	420	PASS	-	-	-	-	-	Del	-	D	184108913	184108921	1	18	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	2	5	4	18	22	18	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163264	2	184394330	T	TGTTGAAGGGACCTCAGTCAGTTG	319	PASS	-	-	-	-	-	Ins	-	I	184394330	184394354	23	30	439.91	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	9	1	1	20	29	21	37	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163297	2	184550924	AT	A	360	PASS	-	-	-	-	-	Del	-	D	184550924	184550931	1	12	323.035	-	-	6	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	5	1	6	4	27	27	27	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163382	2	184898504	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	184898504	184898512	1	10	266.186	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	10	8	0	0	./.	4	1	6	1	20	5	21	5	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163476	2	185117183	GA	G	360	PASS	-	-	-	-	-	Del	-	D	185117183	185117193	1	16	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	4	7	17	27	17	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163554	2	185486347	CT	C	360	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Del	intronic	D	185486347	185486355	1	12	323.035	-	-	7	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	1	5	1	6	3	18	3	18	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163698	2	186182526	CT	C	420	PASS	-	-	-	-	-	Del	-	D	186182526	186182531	1	14	376.874	-	-	4	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	6	1	7	9	29	9	29	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163807	2	186634202	AT	A	360	PASS	FSIP2	ENST00000424728	r.?	-	-	Del	intronic	D	186634202	186634211	1	16	323.035	-	-	8	1	1	FSIP2|ENST00000424728|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSIP2|ENST00000424728|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	3	5	23	16	23	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163844	2	186772511	CA	C	480	PASS	-	-	-	-	-	Del	-	D	186772511	186772519	1	25	430.714	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	4	5	5	28	30	28	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760163932	2	187199018	GA	G	360	PASS	-	-	-	-	-	Del	-	D	187199018	187199028	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	5	5	24	31	24	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164050	2	187596315	G	GT	480	PASS	FAM171B	CCDS33347.1	r.?	-	-	Ins	intronic	I	187596315	187596322	1	21	425.897	-	-	6	1	1	FAM171B|CCDS33347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM171B|CCDS33347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	6	2	6	25	25	26	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164180	2	188091122	CT	C	300	PASS	-	-	-	-	-	Del	-	D	188091122	188091132	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	4	5	26	35	26	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164332	2	188665443	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	188665443	188665452	1	12	265.584	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	11	15	0	0	./.	2	3	4	3	31	20	32	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164359	2	188771851	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	188771851	188771861	1	15	317.617	-	-	9	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	4	2	4	4	22	4	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164531	2	189385864	CA	C	329	PASS	GULP1	CCDS2295.1	r.?	-	-	Del	intronic	D	189385864	189385874	1	12	323.035	-	-	9	1	1	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	1	5	2	7	10	24	10	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164548	2	189484633	CT	C	480	PASS	-	-	-	-	-	Del	-	D	189484633	189484643	1	25	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	4	5	6	31	29	31	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164592	2	189678487	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	189678487	189678494	1	21	425.897	-	-	6	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	6	2	8	2	29	14	29	15	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164868	2	190763130	AT	A	300	PASS	-	-	-	-	-	Del	-	D	190763130	190763140	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	3	6	22	22	22	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760164953	2	191121919	TA	T	360	PASS	HIBCH	CCDS46475.1	r.?	-	-	Del	intronic	D	191121919	191121925	1	16	323.035	-	-	5	1	1	HIBCH|CCDS46475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HIBCH|CCDS46475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	3	3	3	4	28	28	28	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165111	2	191597390	TA	T	360	PASS	-	-	-	-	-	Del	-	D	191597390	191597400	1	12	322.433	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	1	6	1	22	22	22	22	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165174	2	191734255	CA	C	300	PASS	-	-	-	-	-	Del	-	D	191734255	191734265	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	3	2	30	24	30	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165383	2	192417091	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	192417091	192417100	1	12	266.186	-	-	8	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	4	29	16	29	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165462	2	192668112	CA	C	420	PASS	-	-	-	-	-	Del	-	D	192668112	192668122	1	18	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	5	2	6	2	27	12	27	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165475	2	192709448	GT	G	480	PASS	SDPR	CCDS2313.1	r.?	-	-	Del	intronic	D	192709448	192709458	1	25	430.714	-	-	9	1	1	SDPR|CCDS2313.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDPR|CCDS2313.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	4	4	8	26	32	26	32	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165716	2	193501843	CA	C	420	PASS	-	-	-	-	-	Del	-	D	193501843	193501852	1	20	376.874	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	3	7	16	18	16	18	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165737	2	193653129	AT	A	360	PASS	-	-	-	-	-	Del	-	D	193653129	193653137	1	12	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	1	5	2	6	16	28	16	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165743	2	193763398	TA	T	269	PASS	-	-	-	-	-	Del	-	D	193763398	193763408	1	6	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	5	0	5	0	27	0	27	0	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165771	2	193892154	TA	T	300	PASS	-	-	-	-	-	Del	-	D	193892154	193892164	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	1	4	2	5	15	18	15	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760165875	2	194395821	AT	A	357	PASS	-	-	-	-	-	Del	-	D	194395821	194395831	1	12	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	1	5	1	6	7	21	7	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760166344	2	196272774	AT	A	300	PASS	-	-	-	-	-	Del	-	D	196272774	196272784	1	10	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	1	6	2	30	26	30	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760166351	2	196294440	CT	C	360	PASS	-	-	-	-	-	Del	-	D	196294440	196294449	1	16	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	4	8	12	28	12	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760166523	2	196815190	AT	A	371	PASS	DNAH7	CCDS42794.1	r.?	-	-	Del	intronic	D	196815190	196815199	1	14	376.874	-	-	8	1	1	DNAH7|CCDS42794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH7|CCDS42794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	1	6	1	8	24	26	24	26	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760166632	2	197146429	GA	G	360	PASS	HECW2	CCDS33354.1	r.?	-	-	Del	intronic	D	197146429	197146437	1	16	323.035	-	-	7	1	1	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	3	3	4	19	13	19	13	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760166849	2	197866395	CT	C	360	PASS	ANKRD44	CCDS33355.1	r.?	-	-	Del	intronic	D	197866395	197866402	1	15	323.035	-	-	6	1	1	ANKRD44|CCDS33355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD44|CCDS33355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	4	2	5	3	24	23	24	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167114	2	198564565	AT	A	360	PASS	ENSG00000222017	ENST00000409845	r.?	-	-	Del	intronic	D	198564565	198564575	1	16	323.035	-	-	9	1	1	ENSG00000222017|ENST00000409845|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000222017|ENST00000409845|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	5	3	24	20	24	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167210	2	199032021	CT	C	420	PASS	-	-	-	-	-	Del	-	D	199032021	199032027	1	18	376.874	-	-	5	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	5	3	5	23	23	23	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167231	2	199091781	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	199091781	199091791	1	12	266.186	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	4	2	24	33	24	33	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167370	2	199512039	TA	T	480	PASS	-	-	-	-	-	Del	-	D	199512039	199512048	1	24	430.714	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	5	4	5	18	22	18	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167445	2	199757746	GA	G	300	PASS	-	-	-	-	-	Del	-	D	199757746	199757754	1	12	268.594	-	-	7	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	3	4	28	21	28	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167448	2	199760342	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	199760342	199760351	1	6	265.584	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	8	0	36	27	37	28	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167593	2	200288344	AC	A	300	PASS	SATB2	CCDS2327.1	r.?	-	-	Del	intronic	D	200288344	200288350	1	12	269.196	-	-	5	1	1	SATB2|CCDS2327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SATB2|CCDS2327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	6	5	28	18	28	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167693	2	200652446	GA	G	300	PASS	-	-	-	-	-	Del	-	D	200652446	200652454	1	6	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	0	5	0	6	3	25	3	25	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167787	2	201007386	GA	G	300	PASS	-	-	-	-	-	Del	-	D	201007386	201007396	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	1	4	2	5	7	17	7	17	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760167928	2	201451861	CA	C	300	PASS	AOX1	CCDS33360.1	r.?	-	-	Del	intronic	D	201451861	201451871	1	12	268.594	-	-	9	1	-	AOX1|CCDS33360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AOX1|CCDS33360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	2	5	3	23	23	23	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168010	2	201693523	GA	G	660	PASS	BZW1	ENST00000409600	r.?	-	-	Del	downstream	D	201693523	201693531	1	30	592.231	-	-	7	1	1	BZW1|ENST00000409600|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	BZW1|ENST00000409600|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	15	9	15	0	0	./.	9	2	10	6	37	31	37	31	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168012	2	201697209	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	201697209	201697218	1	12	319.423	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	1	5	1	30	17	31	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168074	2	201837256	TTTTG	T	360	PASS	-	-	-	-	-	Del	-	D	201837256	201837272	4	15	318.821	-	-	3	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	2	5	4	21	12	21	12	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168092	2	201914081	C	CT	300	PASS	FAM126B	CCDS2335.1	r.?	-	-	Ins	intronic	I	201914081	201914091	1	12	265.584	-	-	9	1	1	FAM126B|CCDS2335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM126B|CCDS2335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	14	5	0	0	./.	2	3	2	5	16	26	16	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168454	2	202830737	CA	C	360	PASS	-	-	-	-	-	Del	-	D	202830737	202830747	1	15	323.035	-	-	9	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	4	2	4	24	28	24	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168481	2	202888494	TC	T	420	PASS	-	-	-	-	-	Del	-	D	202888494	202888502	1	14	372.66	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	1	7	3	30	25	30	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168684	2	203426266	CT	C	360	PASS	BMPR2	CCDS33361.1	r.5254delU	c.?	p.?	Del	3'UTR variant	D	203426266	203426275	1	15	323.035	-	-	8	1	1	BMPR2|CCDS33361.1|r.5254delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	BMPR2|CCDS33361.1|r.5254delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	6	2	26	11	26	11	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168779	2	203699350	CA	C	300	PASS	ICA1L	CCDS2354.1	r.?	-	-	Del	intronic	D	203699350	203699358	1	10	260.767	-	-	7	1	1	ICA1L|CCDS2354.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ICA1L|CCDS2354.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	2	5	22	16	22	16	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168960	2	204231586	GT	G	600	PASS	ABI2	CCDS2358.1	r.?	-	-	Del	intronic	D	204231586	204231595	1	36	538.392	-	-	8	1	1	ABI2|CCDS2358.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABI2|CCDS2358.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	5	5	6	23	27	23	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760168986	2	204293343	TC	T	360	PASS	ABI2	CCDS2358.1	r.2932delC	c.?	p.?	Del	3'UTR variant	D	204293343	204293349	1	16	323.035	-	-	5	1	1	ABI2|CCDS2358.1|r.2932delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ABI2|CCDS2358.1|r.2932delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	3	5	20	19	20	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169025	2	204383406	C	CA	360	PASS	RAPH1	CCDS2359.1	r.?	-	-	Ins	intronic	I	204383406	204383414	1	7	319.423	-	-	7	1	1	RAPH1|CCDS2359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RAPH1|CCDS2359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	15	13	0	0	./.	0	6	2	6	25	25	25	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169058	2	204487255	ATAT	A	269	PASS	-	-	-	-	-	Del	-	D	204487255	204487261	3	10	267.39	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	4	1	5	1	24	22	24	22	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169079	2	204554213	TA	T	420	PASS	-	-	-	-	-	Del	-	D	204554213	204554220	1	20	376.874	-	-	6	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	4	4	7	21	27	21	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169165	2	204767551	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	204767551	204767559	1	20	372.66	-	-	7	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	4	5	7	27	27	27	27	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169185	2	204806888	AT	A	300	PASS	ICOS	CCDS2363.1	r.?	-	-	Del	intronic	D	204806888	204806897	1	12	269.196	-	-	8	1	1	ICOS|CCDS2363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ICOS|CCDS2363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	2	3	4	4	16	27	16	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169273	2	205145324	AG	A	540	PASS	-	-	-	-	-	Del	-	D	205145324	205145330	1	28	484.553	-	-	5	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	3	6	4	6	20	36	20	36	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169390	2	205675489	GT	G	420	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	205675489	205675498	1	18	376.272	-	-	8	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	5	2	5	36	23	36	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169619	2	206498385	CT	C	480	PASS	-	-	-	-	-	Del	-	D	206498385	206498394	1	25	428.907	-	-	8	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	4	4	6	4	26	34	26	34	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169630	2	206529577	GT	G	300	PASS	-	-	-	-	-	Del	-	D	206529577	206529587	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	1	8	2	28	25	28	25	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169658	2	206615457	CA	C	300	PASS	NRP2	CCDS2364.1	r.?	-	-	Del	intronic	D	206615457	206615462	1	12	269.196	-	-	4	1	1	NRP2|CCDS2364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRP2|CCDS2364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	5	5	21	22	21	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169678	2	206698973	CT	C	300	PASS	-	-	-	-	-	Del	-	D	206698973	206698982	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	5	3	22	29	22	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169751	2	206868455	CA	C	360	PASS	INO80D	CCDS46500.1	r.4125delU	c.?	p.?	Del	3'UTR variant	D	206868455	206868465	1	12	321.831	-	-	9	1	1	INO80D|CCDS46500.1|r.4125delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	INO80D|CCDS46500.1|r.4125delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	8	10	8	0	0	./.	5	1	10	2	35	22	35	22	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169909	2	207155635	GT	G	420	PASS	ZDBF2	CCDS46501.1	r.?	-	-	Del	intronic	D	207155635	207155644	1	14	376.874	-	-	8	1	1	ZDBF2|CCDS46501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZDBF2|CCDS46501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	1	6	1	27	18	27	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760169920	2	207275798	TC	T	449	PASS	-	-	-	-	-	Del	-	D	207275798	207275806	1	24	419.877	-	-	7	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	5	4	6	28	38	28	38	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170049	2	207830015	GT	G	300	PASS	CPO	CCDS2372.1	r.?	-	-	Del	intronic	D	207830015	207830021	1	10	268.594	-	-	5	1	1	CPO|CCDS2372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPO|CCDS2372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	1	4	3	6	23	37	23	37	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170190	2	208233359	GC	G	360	PASS	-	-	-	-	-	Del	-	D	208233359	208233366	1	16	322.433	-	-	6	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	3	3	4	4	21	29	21	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170250	2	208458848	TA	T	300	PASS	CREB1	CCDS2375.1	r.?	-	-	Del	intronic	D	208458848	208458855	1	6	269.196	-	-	6	1	1	CREB1|CCDS2375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB1|CCDS2375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	0	5	0	7	4	20	4	20	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170261	2	208479429	C	CT	300	PASS	FAM119A	CCDS2376.1	r.?	-	-	Ins	intronic	I	208479429	208479438	1	12	266.186	-	-	8	1	1	FAM119A|CCDS2376.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM119A|CCDS2376.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	5	4	28	20	28	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170355	2	208647252	GA	G	300	PASS	-	-	-	-	-	Del	-	D	208647252	208647262	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	2	3	2	4	21	20	21	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170444	2	208893843	CT	C	269	PASS	PLEKHM3	CCDS42808.1	r.?	-	-	Del	upstream	D	208893843	208893852	1	12	268.594	-	-	8	1	1	PLEKHM3|CCDS42808.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PLEKHM3|CCDS42808.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	18	16	20	0	0	./.	3	2	5	2	27	34	27	42	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170568	2	209112849	G	GA	540	PASS	IDH1	CCDS2381.1	r.?	-	-	Ins	intronic	I	209112849	209112858	1	30	470.103	-	-	8	1	1	IDH1|CCDS2381.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IDH1|CCDS2381.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	21	17	0	0	./.	5	4	5	5	27	26	27	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170649	2	209316554	AT	A	300	PASS	PTH2R	CCDS2383.1	r.?	-	-	Del	intronic	D	209316554	209316560	1	10	269.196	-	-	5	1	1	PTH2R|CCDS2383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTH2R|CCDS2383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	1	4	1	17	4	17	4	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170653	2	209330917	AT	A	420	PASS	PTH2R	CCDS2383.1	r.?	-	-	Del	intronic	D	209330917	209330927	1	18	373.262	-	-	9	1	1	PTH2R|CCDS2383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTH2R|CCDS2383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	5	2	9	3	33	22	33	22	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170883	2	210298072	TGA	T	300	PASS	MAP2	CCDS33369.1	r.?	-	-	Del	intronic	D	210298072	210298082	2	12	269.196	-	-	4	1	1	MAP2|CCDS33369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP2|CCDS33369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	3	2	4	2	19	25	19	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760170989	2	210871128	GT	G	420	PASS	RPE	CCDS2388.1	r.?	-	-	Del	intronic	D	210871128	210871138	1	20	376.874	-	-	9	1	1	RPE|CCDS2388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPE|CCDS2388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	3	4	14	27	14	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760171086	2	211255754	GT	G	300	PASS	-	-	-	-	-	Del	-	D	211255754	211255764	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	3	6	28	24	28	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760171176	2	211618624	CT	C	360	PASS	-	-	-	-	-	Del	-	D	211618624	211618633	1	7	323.035	-	-	8	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	6	0	7	0	27	13	27	13	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760171506	2	212693095	TAAGGA	T	261	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	212693095	212693104	5	30	483.951	-	-	1	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	5	4	7	5	32	25	32	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760171640	2	213128321	G	GA	300	PASS	ERBB4	CCDS2394.1	r.?	-	-	Ins	intronic	I	213128321	213128328	1	6	266.186	-	-	6	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	0	5	0	6	0	20	0	20	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760171702	2	213298035	TAAAAG	T	269	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	213298035	213298043	5	12	269.196	-	-	1	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	2	3	2	3	17	14	17	14	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760172074	2	214636026	GT	G	360	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	214636026	214636034	1	16	320.025	-	-	7	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	3	3	3	20	36	20	36	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760172133	2	214918723	CT	C	420	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	214918723	214918733	1	14	376.874	-	-	9	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	1	6	3	8	24	24	24	24	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760172357	2	215568769	CA	C	300	PASS	-	-	-	-	-	Del	-	D	215568769	215568778	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	3	2	22	8	22	8	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760172408	2	215721708	CT	C	300	PASS	-	-	-	-	-	Del	-	D	215721708	215721718	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	4	1	4	1	36	11	36	11	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760172435	2	215803527	G	GT	360	PASS	ABCA12	CCDS33372.1	r.?	-	-	Ins	intronic	I	215803527	215803536	1	16	315.208	-	-	8	1	1	ABCA12|CCDS33372.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCA12|CCDS33372.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	16	12	0	0	./.	3	3	5	5	33	25	35	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760172829	2	216772383	TG	T	269	PASS	-	-	-	-	-	Del	-	D	216772383	216772389	1	10	267.992	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	5	4	23	20	23	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173020	2	217235079	TG	T	480	PASS	MARCH4	CCDS33376.1	r.1671delC	c.?	p.?	Del	5'UTR variant	D	217235079	217235086	1	21	429.51	-	-	6	1	1	MARCH4|CCDS33376.1|r.1671delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	MARCH4|CCDS33376.1|r.1671delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	7	8	7	8	0	0	./.	2	6	2	7	17	29	17	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173080	2	217385386	TA	T	360	PASS	RPL37A	ENST00000446558	r.?	-	-	Del	intronic	D	217385386	217385395	1	15	322.433	-	-	8	1	1	RPL37A|ENST00000446558|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPL37A|ENST00000446558|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	4	3	26	15	26	15	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173145	2	217600241	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	217600241	217600249	1	18	372.058	-	-	7	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	2	5	2	7	4	28	4	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173184	2	217690385	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	217690385	217690387	1	20	372.66	-	-	1	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	3	4	3	5	27	21	28	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173191	2	217731812	TA	T	540	PASS	ENSG00000223874	ENST00000456163	r.?	-	-	Del	upstream	D	217731812	217731821	1	30	484.553	-	-	8	1	1	ENSG00000223874|ENST00000456163|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000223874|ENST00000456163|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	10	14	10	0	0	./.	5	4	5	5	29	29	29	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173255	2	217978882	CT	C	540	PASS	-	-	-	-	-	Del	-	D	217978882	217978891	1	30	484.553	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	5	6	7	28	27	28	27	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173387	2	218460739	GC	G	360	PASS	-	-	-	-	-	Del	-	D	218460739	218460747	1	15	323.035	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	4	4	31	27	31	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173420	2	218604776	AT	A	300	PASS	DIRC3	ENST00000423123	r.?	-	-	Del	intronic	D	218604776	218604785	1	6	269.196	-	-	8	1	1	DIRC3|ENST00000423123|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIRC3|ENST00000423123|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	5	0	6	0	37	10	37	10	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173476	2	218882993	CT	C	420	PASS	-	-	-	-	-	Del	-	D	218882993	218882998	1	18	376.874	-	-	4	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	5	3	8	20	39	20	39	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173497	2	218987108	CTT	C	420	PASS	CXCR2	CCDS2408.1	r.?	-	-	Del	upstream	D	218987108	218987112	2	20	376.874	-	-	3	1	1	CXCR2|CCDS2408.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CXCR2|CCDS2408.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	4	4	21	14	21	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173641	2	219297439	G	GT	360	PASS	VIL1	CCDS2417.1	r.?	-	-	Ins	intronic	I	219297439	219297442	1	16	319.423	-	-	2	1	1	VIL1|CCDS2417.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VIL1|CCDS2417.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	4	4	21	26	21	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173668	2	219372911	GT	G	600	PASS	USP37	CCDS2418.1	r.?	-	-	Del	intronic	D	219372911	219372920	1	35	538.392	-	-	8	1	1	USP37|CCDS2418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP37|CCDS2418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	6	4	6	4	24	21	24	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173834	2	219807911	CA	C	360	PASS	-	-	-	-	-	Del	-	D	219807911	219807921	1	12	319.423	-	-	9	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	1	5	1	5	32	29	32	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173893	2	220028425	G	GT	300	PASS	SLC23A3	CCDS46517.1	r.?	-	-	Ins	intronic	I	220028425	220028435	1	12	264.982	-	-	9	1	-	SLC23A3|CCDS46517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC23A3|CCDS46517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	5	3	34	30	34	30	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760173910	2	220067890	CT	C	420	PASS	ZFAND2B	CCDS2435.1	r.?	-	-	Del	upstream	D	220067890	220067899	1	18	376.272	-	-	8	1	1	ZFAND2B|CCDS2435.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZFAND2B|ENST00000436556|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	2	6	6	34	29	34	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174011	2	220366325	TG	T	300	PASS	GMPPA	CCDS2441.1	r.?	-	-	Del	intronic	D	220366325	220366333	1	12	269.196	-	-	7	1	1	GMPPA|CCDS2441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GMPPA|CCDS2441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	3	4	23	26	23	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174218	2	220943916	AT	A	300	PASS	-	-	-	-	-	Del	-	D	220943916	220943926	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	2	18	14	18	14	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174321	2	221232643	CT	C	360	PASS	-	-	-	-	-	Del	-	D	221232643	221232649	1	16	323.035	-	-	5	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	3	3	30	14	30	14	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174421	2	221639618	AT	A	300	PASS	-	-	-	-	-	Del	-	D	221639618	221639628	1	6	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	5	0	6	1	31	15	31	15	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174581	2	222123383	CA	C	420	PASS	-	-	-	-	-	Del	-	D	222123383	222123393	1	20	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	3	22	3	22	0	0	./.	4	3	5	4	19	16	19	16	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174642	2	222356744	AC	A	420	PASS	EPHA4	CCDS2447.1	r.?	-	-	Del	intronic	D	222356744	222356749	1	18	375.068	-	-	4	1	1	EPHA4|CCDS2447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA4|CCDS2447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	2	5	4	6	26	30	26	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174682	2	222458623	AT	A	300	PASS	-	-	-	-	-	Del	-	D	222458623	222458633	1	10	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	4	1	5	1	28	27	28	27	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174740	2	222679504	CT	C	420	PASS	-	-	-	-	-	Del	-	D	222679504	222679512	1	20	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	4	5	27	20	27	20	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174843	2	223022439	GT	G	480	PASS	-	-	-	-	-	Del	-	D	223022439	223022447	1	21	430.714	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	2	7	4	31	22	31	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174847	2	223029555	CA	C	420	PASS	-	-	-	-	-	Del	-	D	223029555	223029563	1	18	376.874	-	-	7	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	2	5	2	9	17	36	17	36	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760174918	2	223171299	GA	G	360	PASS	CCDC140	CCDS2452.1	r.?	-	-	Del	downstream	D	223171299	223171305	1	15	322.433	-	-	5	1	1	CCDC140|CCDS2452.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CCDC140|CCDS2452.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	7	2	27	19	27	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175026	2	223553949	CT	C	360	PASS	MOGAT1	CCDS46524.1	r.?	-	-	Del	intronic	D	223553949	223553958	1	12	323.035	-	-	8	1	1	MOGAT1|CCDS46524.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MOGAT1|CCDS46524.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	1	5	4	5	32	22	32	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175247	2	224138019	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	224138019	224138035	2	6	267.39	-	-	7	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	0	5	0	20	25	20	25	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175278	2	224317731	GA	G	420	PASS	-	-	-	-	-	Del	-	D	224317731	224317741	1	20	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	4	3	22	17	22	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175350	2	224577720	GT	G	660	PASS	-	-	-	-	-	Del	-	D	224577720	224577729	1	42	592.231	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	5	8	5	31	28	31	28	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175421	2	224719448	TA	T	420	PASS	-	-	-	-	-	Del	-	D	224719448	224719455	1	18	376.874	-	-	6	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	5	2	5	16	18	16	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175515	2	224908945	TC	T	360	PASS	SERPINE2	CCDS2460.1	r.?	-	-	Del	upstream	D	224908945	224908947	1	15	322.433	-	-	1	1	-	SERPINE2|CCDS2460.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SERPINE2|CCDS2460.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	5	3	24	20	24	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760175521	2	224916756	AT	A	480	PASS	-	-	-	-	-	Del	-	D	224916756	224916766	1	24	430.714	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	3	8	4	28	26	28	26	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176011	2	226529915	CT	C	420	PASS	-	-	-	-	-	Del	-	D	226529915	226529925	1	14	376.874	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	6	3	6	25	29	25	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176039	2	226666476	CT	C	300	PASS	-	-	-	-	-	Del	-	D	226666476	226666484	1	12	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	3	5	12	25	12	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176215	2	227235081	CT	C	780	PASS	-	-	-	-	-	Del	-	D	227235081	227235083	1	44	698.706	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	10	3	12	30	31	30	31	3	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176264	2	227384212	GA	G	300	PASS	-	-	-	-	-	Del	-	D	227384212	227384222	1	12	269.196	-	-	9	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	2	3	8	22	8	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176339	2	227722590	T	TA	300	PASS	RHBDD1	CCDS2464.1	r.?	-	-	Ins	intronic	I	227722590	227722600	1	6	266.186	-	-	9	1	1	RHBDD1|CCDS2464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RHBDD1|CCDS2464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	12	0	0	./.	0	5	1	7	31	31	31	32	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176347	2	227779363	TA	T	360	PASS	RHBDD1	CCDS2464.1	r.?	-	-	Del	intronic	D	227779363	227779372	1	7	321.831	-	-	8	1	1	RHBDD1|CCDS2464.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RHBDD1|CCDS2464.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	0	6	1	10	27	38	27	38	1	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176348	2	227805841	G	GT	360	PASS	RHBDD1	CCDS2464.1	r.?	-	-	Ins	intronic	I	227805841	227805844	1	16	318.821	-	-	2	1	-	RHBDD1|CCDS2464.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RHBDD1|CCDS2464.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	15	11	0	0	./.	3	3	5	4	33	22	33	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760176420	2	228030339	TA	T	360	PASS	COL4A4	CCDS42828.1	r.?	-	-	Del	upstream	D	228030339	228030345	1	15	320.627	-	-	5	1	1	COL4A4|CCDS42828.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	COL4A3|CCDS42829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	2	6	12	25	12	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177083	2	229740232	CCTT	C	689	PASS	-	-	-	-	-	Del	-	D	229740232	229740241	3	33	646.07	-	-	2	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	10	2	11	23	38	23	38	2	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177130	2	229933663	CCT	C	480	PASS	PID1	CCDS2471.1	r.?	-	-	Del	intronic	D	229933663	229933677	2	24	429.51	-	-	6	1	1	PID1|CCDS2471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PID1|CCDS2471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	3	5	3	20	28	20	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177260	2	230263659	TA	T	600	PASS	DNER	CCDS33390.1	r.?	-	-	Del	intronic	D	230263659	230263669	1	36	538.392	-	-	9	1	1	DNER|CCDS33390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNER|CCDS33390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	5	5	5	21	23	21	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177535	2	231043970	TC	T	329	PASS	SP110	CCDS2475.1	r.?	-	-	Del	intronic	D	231043970	231043977	1	12	321.831	-	-	6	1	1	SP110|CCDS2475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP110|CCDS2475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	1	5	2	6	23	31	23	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177562	2	231104867	CA	C	300	PASS	SP140	CCDS42831.1	r.?	-	-	Del	intronic	D	231104867	231104875	1	12	268.594	-	-	7	1	1	SP140|CCDS42831.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP140|CCDS42831.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	2	4	4	29	25	29	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177787	2	231735595	TC	T	300	PASS	ITM2C	CCDS2479.1	r.?	-	-	Del	intronic	D	231735595	231735599	1	12	268.594	-	-	3	1	1	ITM2C|CCDS2479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITM2C|CCDS2479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	5	2	21	27	21	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760177837	2	231884215	AT	A	268	PASS	SPATA3	ENST00000355662	r.?	-	-	Del	intronic	D	231884215	231884221	1	12	268.594	-	-	5	1	1	SPATA3|ENST00000355662|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	SPATA3|ENST00000355662|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	3	4	25	22	25	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760178109	2	232531746	TG	T	480	PASS	-	-	-	-	-	Del	-	D	232531746	232531753	1	25	430.714	-	-	6	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	4	4	6	5	23	20	23	20	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760178433	2	233560571	G	GT	300	PASS	GIGYF2	CCDS33401.1	r.?	-	-	Ins	upstream	I	233560571	233560579	1	6	264.982	-	-	7	1	-	GIGYF2|CCDS33401.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	GIGYF2|CCDS33401.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	19	10	19	10	0	0	./.	5	0	6	0	30	2	30	2	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760178928	2	234859898	CA	C	300	PASS	TRPM8	CCDS33407.1	r.?	-	-	Del	intronic	D	234859898	234859906	1	12	269.196	-	-	7	1	1	TRPM8|CCDS33407.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM8|CCDS33407.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	2	4	22	29	22	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760178992	2	235114680	AT	A	300	PASS	-	-	-	-	-	Del	-	D	235114680	235114690	1	12	268.594	-	-	9	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	3	2	4	2	21	13	21	13	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760178995	2	235120824	AT	A	360	PASS	-	-	-	-	-	Del	-	D	235120824	235120831	1	15	323.035	-	-	6	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	4	2	4	4	18	18	18	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179040	2	235228281	CT	C	420	PASS	-	-	-	-	-	Del	-	D	235228281	235228290	1	18	376.272	-	-	8	1	-	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	2	5	6	25	30	25	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179159	2	235466190	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	235466190	235466198	1	12	266.186	-	-	7	1	1	-	-	./.	0	0	0	0	6	8	7	8	0	0	./.	3	2	4	2	25	31	25	31	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179170	2	235489654	CA	C	540	PASS	-	-	-	-	-	Del	-	D	235489654	235489658	1	18	483.349	-	-	3	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	1	8	2	8	17	20	17	20	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179211	2	235569137	GA	G	300	PASS	-	-	-	-	-	Del	-	D	235569137	235569143	1	12	269.196	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	4	3	22	18	22	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179381	2	236115382	TA	T	360	PASS	-	-	-	-	-	Del	-	D	236115382	236115391	1	15	322.433	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	2	6	32	29	32	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179403	2	236175546	AC	A	420	PASS	-	-	-	-	-	Del	-	D	236175546	236175552	1	20	376.874	-	-	5	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	4	3	7	5	28	34	29	34	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179637	2	236883989	GT	G	300	PASS	AGAP1	CCDS33408.1	r.?	-	-	Del	intronic	D	236883989	236883998	1	12	269.196	-	-	8	1	1	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	3	2	25	16	25	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179788	2	237203398	GT	G	480	PASS	ENSG00000233611	ENST00000415226	r.?	-	-	Del	intronic	D	237203398	237203407	1	24	430.714	-	-	8	1	1	ENSG00000233611|ENST00000415226|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ENSG00000233611|ENST00000415226|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	3	7	4	36	27	36	27	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760179961	2	237910224	CA	C	480	PASS	-	-	-	-	-	Del	-	D	237910224	237910233	1	24	430.714	-	-	8	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	4	6	33	28	33	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180067	2	238365906	TG	T	300	PASS	-	-	-	-	-	Del	-	D	238365906	238365914	1	12	269.196	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	4	3	18	21	18	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180133	2	238605672	C	CT	360	PASS	LRRFIP1	CCDS2521.1	r.?	-	-	Ins	intronic	I	238605672	238605682	1	12	314.606	-	-	9	1	1	LRRFIP1|CCDS2521.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRFIP1|CCDS2521.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	14	7	0	0	./.	5	1	8	2	32	23	32	23	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180150	2	238696720	AT	A	300	PASS	-	-	-	-	-	Del	-	D	238696720	238696729	1	12	269.196	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	7	3	26	16	26	16	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180269	2	239010795	T	TG	629	PASS	ESPNL	CCDS2525.1	r.?	-	-	Ins	intronic	I	239010795	239010803	1	40	585.609	-	-	7	1	1	ESPNL|CCDS2525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESPNL|CCDS2525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	7	4	9	5	31	30	31	30	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180316	2	239167483	TG	T	360	PASS	PER2	CCDS2528.1	r.?	-	-	Del	intronic	D	239167483	239167492	1	7	319.423	-	-	8	1	1	PER2|CCDS2528.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PER2|CCDS2528.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	0	6	1	7	22	25	22	25	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180374	2	239351289	GT	G	360	PASS	ASB1	CCDS33416.1	r.?	-	-	Del	intronic	D	239351289	239351297	1	15	323.035	-	-	7	1	1	ASB1|CCDS33416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB1|CCDS33416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	4	3	31	30	31	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180508	2	239833377	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	239833377	239833394	2	12	269.196	-	-	8	1	-	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	4	5	24	27	24	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180560	2	239974109	TA	T	300	PASS	HDAC4	CCDS2529.1	r.4730delU	c.?	p.?	Del	3'UTR variant	D	239974109	239974119	1	12	264.38	-	-	9	1	1	HDAC4|CCDS2529.1|r.4730delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	HDAC4|CCDS2529.1|r.4730delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	4	4	31	18	31	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180610	2	240131110	G	GA	598	PASS	HDAC4	CCDS2529.1	r.?	-	-	Ins	intronic	I	240131110	240131117	1	42	585.609	-	-	6	1	1	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	6	7	7	36	23	36	23	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180688	2	240379055	AT	A	720	PASS	-	-	-	-	-	Del	-	D	240379055	240379065	1	49	644.264	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	6	6	7	38	32	38	32	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180689	2	240379730	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	240379730	240379733	1	49	636.438	-	-	2	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	6	6	6	8	27	35	27	35	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180741	2	240633741	GC	G	629	PASS	-	-	-	-	-	Del	-	D	240633741	240633750	1	42	586.211	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	5	6	8	8	26	37	26	37	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180790	2	240819005	CT	C	420	PASS	-	-	-	-	-	Del	-	D	240819005	240819013	1	20	376.272	-	-	7	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	4	3	4	3	19	24	19	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760180919	2	241182385	CT	C	360	PASS	-	-	-	-	-	Del	-	D	241182385	241182395	1	7	321.229	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	0	7	0	30	4	30	4	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181237	2	242267845	CA	C	360	PASS	SEPT2	CCDS2548.1	r.?	-	-	Del	intronic	D	242267845	242267852	1	16	323.035	-	-	6	1	1	SEPT2|CCDS2548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPT2|CCDS2548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	4	4	20	20	20	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181304	2	242437928	AG	A	300	PASS	STK25	CCDS2549.1	r.?	-	-	Del	intronic	D	242437928	242437934	1	10	269.196	-	-	5	1	1	STK25|CCDS2549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK25|CCDS2549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	2	25	33	25	33	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181625	20	162985	GA	G	1020	PASS	-	-	-	-	-	Del	-	D	162985	162993	1	88	924.642	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	10	7	12	9	28	21	28	21	12	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181639	20	208335	C	CT	300	PASS	DEFB129	CCDS12992.1	r.?	-	-	Ins	intronic	I	208335	208345	1	12	268.943	-	-	9	1	1	DEFB129|CCDS12992.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DEFB129|CCDS12992.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	15	0	0	./.	2	3	2	3	30	33	32	33	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181721	20	363875	CT	C	480	PASS	TRIB3	CCDS12997.1	r.?	-	-	Del	intronic	D	363875	363880	1	21	435.126	-	-	4	1	1	TRIB3|CCDS12997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRIB3|CCDS12997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	2	6	4	6	27	27	27	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181780	20	483799	G	GT	300	PASS	CSNK2A1P	CCDS13003.1	r.?	-	-	Ins	intronic	I	483799	483806	1	12	268.943	-	-	6	1	1	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	2	3	3	4	25	31	25	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181901	20	763102	GC	G	360	PASS	-	-	-	-	-	Del	-	D	763102	763109	1	15	325.14	-	-	6	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	2	4	2	4	22	21	22	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760181935	20	836059	CA	C	480	PASS	-	-	-	-	-	Del	-	D	836059	836068	1	24	435.126	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	5	3	6	33	28	33	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182108	20	1369882	CTAGAG	CTG	387	PASS	FKBP1A	CCDS13014.1	r.?	-	-	Complex	intronic	DI	1369883	1369887	5	21	0	-	-	0	1	1	FKBP1A|CCDS13014.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	FKBP1A|CCDS13014.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	6	2	0	0	20	24	20	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182351	20	2230608	TA	T	300	PASS	ENSG00000225631	ENST00000437539	r.?	-	-	Del	upstream	D	2230608	2230615	1	12	271.351	-	-	6	1	1	ENSG00000225631|ENST00000437539|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000225631|ENST00000437539|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	4	4	28	26	28	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182554	20	2738427	TA	T	300	PASS	EBF4	CCDS46573.1	r.?	-	-	Del	intronic	D	2738427	2738436	1	6	265.933	-	-	8	1	1	EBF4|CCDS46573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EBF4|CCDS46573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	0	5	1	6	12	22	12	22	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182560	20	2756406	TTTTG	T	300	PASS	-	-	-	-	-	Del	-	D	2756406	2756416	4	10	271.954	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	1	5	10	29	10	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182681	20	3099584	CA	C	300	PASS	UBOX5	CCDS13046.1	r.?	-	-	Del	intronic	D	3099584	3099594	1	12	268.341	-	-	9	1	1	UBOX5|CCDS13046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBOX5|CCDS13046.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	5	5	15	31	15	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182700	20	3153703	AG	A	360	PASS	ENSG00000088899	CCDS13049.1	r.?	-	-	Del	upstream	D	3153703	3153711	1	15	319.722	-	-	7	1	1	ENSG00000088899|CCDS13049.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000088899|ENST00000360342|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	2	4	4	7	14	23	14	23	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182800	20	3336683	A	AT	360	PASS	C20orf194	CCDS42851.1	r.?	-	-	Ins	intronic	I	3336683	3336691	1	12	316.711	-	-	7	1	1	C20orf194|CCDS42851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C20orf194|CCDS42851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	8	2	32	15	32	15	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760182916	20	3565223	TA	T	449	PASS	ATRN	CCDS13053.1	r.?	-	-	Del	intronic	D	3565223	3565233	1	25	434.524	-	-	9	1	1	ATRN|CCDS13053.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRN|CCDS13053.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	4	4	6	39	24	39	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183063	20	3880128	T	TC	360	PASS	PANK2	CCDS13072.1	r.?	-	-	Ins	intronic	I	3880128	3880129	1	16	322.732	-	-	0	1	1	PANK2|CCDS13072.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PANK2|CCDS13072.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	15	0	0	./.	3	3	5	5	23	32	23	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183065	20	3882339	T	TA	329	PASS	PANK2	CCDS13072.1	r.?	-	-	Ins	intronic	I	3882339	3882348	1	16	322.732	-	-	8	1	1	PANK2|CCDS13072.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PANK2|CCDS13072.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	3	3	4	4	31	20	31	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183079	20	3922257	CA	C	360	PASS	RNF24	CCDS13074.1	r.?	-	-	Del	intronic	D	3922257	3922267	1	12	326.344	-	-	9	1	1	RNF24|CCDS13074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF24|CCDS13074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	11	21	11	0	0	./.	5	1	9	2	24	8	24	8	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183132	20	4046106	ATCTT	A	300	PASS	ENSG00000205300	ENST00000379526	r.?	-	-	Del	downstream	D	4046106	4046116	4	10	271.954	-	-	2	1	1	ENSG00000205300|ENST00000379526|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000205300|ENST00000379526|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	7	16	7	0	0	./.	1	4	2	6	21	18	21	18	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183245	20	4394868	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	4394868	4394875	1	15	322.13	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	2	4	2	29	23	32	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183566	20	5198597	TA	T	360	PASS	-	-	-	-	-	Del	-	D	5198597	5198605	1	16	325.742	-	-	7	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	3	3	5	5	30	27	30	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183767	20	5627900	CA	C	360	PASS	-	-	-	-	-	Del	-	D	5627900	5627910	1	12	326.344	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	1	6	1	24	13	24	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183850	20	5766560	TC	T	300	PASS	C20orf196	CCDS13091.1	r.?	-	-	Del	intronic	D	5766560	5766563	1	10	271.954	-	-	2	1	1	C20orf196|CCDS13091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf196|CCDS13091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	4	1	28	17	28	17	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183940	20	5967642	GA	G	300	PASS	MCM8	CCDS13094.1	r.?	-	-	Del	intronic	D	5967642	5967647	1	10	271.954	-	-	4	1	1	MCM8|CCDS13094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCM8|CCDS13094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	1	4	2	6	27	27	27	27	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760183942	20	5971421	TA	T	360	PASS	MCM8	CCDS13094.1	r.?	-	-	Del	intronic	D	5971421	5971430	1	15	326.344	-	-	8	1	1	MCM8|CCDS13094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCM8|CCDS13094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	2	6	13	17	13	17	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184075	20	6387967	GT	G	300	PASS	-	-	-	-	-	Del	-	D	6387967	6387973	1	12	271.954	-	-	5	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	2	4	14	23	14	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184131	20	6581730	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	6581730	6581737	1	12	266.535	-	-	6	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	3	2	4	2	39	30	40	30	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184196	20	6809757	AT	A	360	PASS	-	-	-	-	-	Del	-	D	6809757	6809767	1	12	326.344	-	-	9	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	1	5	2	5	24	32	24	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184370	20	7389030	CT	C	480	PASS	-	-	-	-	-	Del	-	D	7389030	7389037	1	24	435.126	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	3	5	3	33	11	33	11	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184482	20	7775220	CA	C	300	PASS	-	-	-	-	-	Del	-	D	7775220	7775228	1	6	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	17	4	17	4	0	0	./.	5	0	6	0	24	0	24	0	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184495	20	7860885	GAGA	G	300	PASS	HAO1	CCDS13100.1	r.?	-	-	Del	downstream	D	7860885	7860894	3	12	271.954	-	-	2	1	1	HAO1|CCDS13100.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HAO1|CCDS13100.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	4	13	38	13	38	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184574	20	8179674	AT	A	360	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8179674	8179683	1	16	326.344	-	-	8	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	3	3	3	5	8	15	8	15	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184682	20	8601547	C	CT	300	PASS	PLCB1	CCDS13103.1	r.?	-	-	Ins	intronic	I	8601547	8601554	1	12	268.943	-	-	6	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	2	5	2	20	22	20	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184700	20	8658388	TA	T	360	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8658388	8658398	1	12	326.344	-	-	9	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	1	5	5	7	24	28	24	28	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760184850	20	9129156	AT	A	360	PASS	PLCB4	CCDS13104.1	r.?	-	-	Del	intronic	D	9129156	9129166	1	12	325.742	-	-	9	1	1	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	1	5	3	6	25	34	25	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185034	20	9899736	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	9899736	9899745	1	10	268.943	-	-	8	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	1	4	1	5	13	17	13	18	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185144	20	10192381	CA	C	480	PASS	-	-	-	-	-	Del	-	D	10192381	10192391	1	24	433.922	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	5	6	23	32	23	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185310	20	10627651	ACT	A	360	PASS	JAG1	CCDS13112.1	r.2249_2250delAG	c.1819_1820delAG	p.Q608fs*8	Del	frameshift	D	10627651	10627656	2	15	325.14	-	-	2	1	1	JAG1|CCDS13112.1|r.2249_2250delAG|c.1819_1820delAG|p.Q608fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	JAG1|CCDS13112.1|r.2249_2250delAG|c.1819_1820delAG|p.Q608fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	6	3	26	28	26	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185377	20	10856890	GA	G	420	PASS	-	-	-	-	-	Del	-	D	10856890	10856897	1	20	380.735	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	5	3	31	25	31	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185400	20	10931963	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	10931963	10931970	1	24	429.105	-	-	6	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	5	3	8	4	33	23	33	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185426	20	11105363	CG	C	480	PASS	-	-	-	-	-	Del	-	D	11105363	11105368	1	21	435.126	-	-	4	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	6	2	8	2	33	19	33	19	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185556	20	11525820	AT	A	300	PASS	-	-	-	-	-	Del	-	D	11525820	11525828	1	12	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	3	3	27	34	27	34	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185558	20	11528068	TA	T	300	PASS	-	-	-	-	-	Del	-	D	11528068	11528077	1	12	271.954	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	2	17	17	17	17	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185718	20	11949877	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	11949877	11949885	1	28	484.098	-	-	7	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	6	3	6	4	35	24	35	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185746	20	12017784	TA	T	300	PASS	-	-	-	-	-	Del	-	D	12017784	12017792	1	12	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	4	3	22	21	22	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185867	20	12388492	CA	C	360	PASS	-	-	-	-	-	Del	-	D	12388492	12388502	1	16	325.14	-	-	9	1	1	-	-	./.	0	0	0	0	8	22	8	22	0	0	./.	3	3	3	3	25	19	25	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760185976	20	12697418	CT	C	360	PASS	-	-	-	-	-	Del	-	D	12697418	12697427	1	16	326.344	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	4	4	23	23	23	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186044	20	12896056	AT	A	480	PASS	-	-	-	-	-	Del	-	D	12896056	12896063	1	24	435.126	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	5	3	8	15	29	15	29	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186078	20	12989531	C	CTG	360	PASS	SPTLC3	CCDS13115.2	r.?	-	-	Ins	upstream	I	12989531	12989545	2	16	319.12	-	-	6	1	1	SPTLC3|CCDS13115.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	SPTLC3|CCDS13115.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	6	10	7	10	0	0	./.	3	3	4	3	30	27	30	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186151	20	13173971	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	13173971	13173980	1	36	589.267	-	-	8	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	3	8	3	8	30	28	30	28	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186154	20	13195978	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	13195978	13195985	1	12	268.943	-	-	6	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	4	4	30	19	30	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186223	20	13404137	TA	T	360	PASS	TASP1	CCDS13116.1	r.?	-	-	Del	intronic	D	13404137	13404147	1	16	326.344	-	-	9	1	1	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	3	3	3	3	23	22	23	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186226	20	13417265	GAA	G	480	PASS	TASP1	CCDS13116.1	r.?	-	-	Del	intronic	D	13417265	13417269	2	24	433.922	-	-	3	1	1	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	5	6	6	28	30	28	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186315	20	13659017	TC	T	360	PASS	-	-	-	-	-	Del	-	D	13659017	13659023	1	15	326.344	-	-	5	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	4	3	5	22	28	22	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186475	20	14216755	GT	G	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14216755	14216763	1	12	326.344	-	-	7	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	1	5	2	23	5	23	5	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186622	20	14745486	AT	A	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14745486	14745495	1	15	325.14	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	4	3	21	33	21	33	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186634	20	14803542	TA	T	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14803542	14803551	1	16	323.334	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	3	3	3	29	20	29	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186645	20	14872405	CA	C	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14872405	14872413	1	12	325.14	-	-	7	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	1	5	2	9	8	24	8	24	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186670	20	14952245	T	TG	300	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	14952245	14952250	1	12	268.943	-	-	4	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	2	6	3	22	30	22	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186763	20	15272940	TA	T	300	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	15272940	15272949	1	12	271.351	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	3	2	4	2	18	19	18	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186800	20	15401731	TA	T	720	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	15401731	15401740	1	48	652.688	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	7	5	11	6	36	20	36	20	11	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186817	20	15453169	GT	G	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	15453169	15453178	1	16	325.14	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	3	3	4	3	27	19	27	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186877	20	15697262	C	CT	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	15697262	15697270	1	15	322.13	-	-	7	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	4	3	6	34	31	34	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760186946	20	15961635	GT	G	540	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	15961635	15961641	1	30	489.516	-	-	5	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	4	5	5	5	22	18	22	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187050	20	16270881	TA	T	360	PASS	KIF16B	CCDS13122.1	r.?	-	-	Del	intronic	D	16270881	16270886	1	12	326.344	-	-	4	1	1	KIF16B|CCDS13122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF16B|CCDS13122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	1	5	1	6	22	26	22	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187170	20	16724694	TC	T	300	PASS	SNRPB2	CCDS13123.1	r.?	-	-	Del	downstream	D	16724694	16724703	1	10	271.954	-	-	8	1	1	SNRPB2|CCDS13123.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OTOR|CCDS13124.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	11	8	11	0	0	./.	1	4	3	4	20	16	20	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187313	20	17264316	A	AT	540	PASS	PCSK2	CCDS13125.1	r.?	-	-	Ins	intronic	I	17264316	17264324	1	28	482.894	-	-	7	1	1	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	6	4	8	17	35	17	36	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187316	20	17269943	TA	T	300	PASS	PCSK2	CCDS13125.1	r.?	-	-	Del	intronic	D	17269943	17269952	1	6	271.954	-	-	8	1	1	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	0	5	0	5	1	38	1	38	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187430	20	17581679	GT	G	360	PASS	DSTN	CCDS13127.1	r.647delU	c.301delT	p.L103fs*6	Del	frameshift	D	17581679	17581688	1	16	326.344	-	-	8	1	1	DSTN|CCDS13127.1|r.647delU|c.301delT|p.L103fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	DSTN|CCDS13127.1|r.647delU|c.301delT|p.L103fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	6	17	6	0	0	./.	3	3	5	4	24	13	24	13	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187442	20	17611012	TAC	T	360	PASS	RRBP1	CCDS13128.1	r.?	-	-	Del	intronic	D	17611012	17611025	2	12	323.334	-	-	6	1	1	RRBP1|CCDS13128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RRBP1|CCDS13128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	8	2	31	18	31	18	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187480	20	17794715	GGA	G	269	PASS	-	-	-	-	-	Del	-	D	17794715	17794733	2	12	268.341	-	-	8	1	-	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	5	2	17	4	17	4	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187510	20	17880243	CA	C	300	PASS	-	-	-	-	-	Del	-	D	17880243	17880252	1	12	270.147	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	6	2	28	20	28	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187554	20	17993982	CA	C	389	PASS	-	-	-	-	-	Del	-	D	17993982	17993990	1	14	380.735	-	-	7	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	1	6	2	6	32	20	32	20	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187653	20	18211448	TA	T	300	PASS	-	-	-	-	-	Del	-	D	18211448	18211458	1	10	268.943	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	5	2	28	18	28	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187875	20	18773444	CT	C	300	PASS	-	-	-	-	-	Del	-	D	18773444	18773452	1	10	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	4	1	5	1	26	20	26	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187883	20	18800408	CT	C	360	PASS	C20orf78	ENST00000278779	r.?	-	-	Del	intronic	D	18800408	18800414	1	15	325.742	-	-	5	1	1	C20orf78|ENST00000278779|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf78|ENST00000278779|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	6	3	29	24	29	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187888	20	18829174	AGAAG	A	329	PASS	-	-	-	-	-	Del	-	D	18829174	18829183	4	16	324.538	-	-	2	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	3	4	20	35	20	35	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760187999	20	19251454	AAG	A	569	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19251454	19251470	2	36	542.703	-	-	7	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	5	6	7	25	30	25	30	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188041	20	19415119	G	GA	569	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Ins	intronic	I	19415119	19415126	1	35	537.886	-	-	6	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	16	20	0	0	./.	6	4	7	6	37	33	37	34	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188047	20	19436729	CT	C	300	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19436729	19436739	1	12	271.352	-	-	9	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	3	4	20	21	20	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188064	20	19487078	TA	T	300	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19487078	19487086	1	12	271.352	-	-	7	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	4	4	22	25	22	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188101	20	19636039	CA	C	300	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19636039	19636049	1	12	271.954	-	-	9	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	3	3	21	32	21	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188106	20	19657265	GA	G	300	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19657265	19657274	1	12	271.351	-	-	8	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	11	28	11	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188218	20	19916956	AT	A	540	PASS	RIN2	ENST00000255006	r.?	-	-	Del	intronic	D	19916956	19916963	1	24	489.516	-	-	6	1	1	RIN2|ENST00000255006|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIN2|ENST00000255006|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	7	2	8	3	33	31	33	31	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188456	20	20821311	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	20821311	20821313	1	6	268.943	-	-	1	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	0	5	5	6	20	23	20	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188774	20	22147470	CT	C	300	PASS	-	-	-	-	-	Del	-	D	22147470	22147477	1	12	270.147	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	4	3	21	24	21	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188796	20	22233457	TG	T	360	PASS	-	-	-	-	-	Del	-	D	22233457	22233463	1	16	323.334	-	-	5	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	3	3	3	5	35	26	35	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188821	20	22337386	CA	C	360	PASS	-	-	-	-	-	Del	-	D	22337386	22337394	1	16	326.344	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	3	4	27	28	27	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188824	20	22363057	CA	C	420	PASS	-	-	-	-	-	Del	-	D	22363057	22363066	1	18	378.327	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	5	3	7	23	33	23	33	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188901	20	22701772	TG	T	300	PASS	-	-	-	-	-	Del	-	D	22701772	22701774	1	6	271.954	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	0	5	0	5	7	31	7	31	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188967	20	22958621	AT	A	420	PASS	-	-	-	-	-	Del	-	D	22958621	22958630	1	20	380.133	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	4	3	5	21	23	21	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760188985	20	23072238	TA	T	600	PASS	-	-	-	-	-	Del	-	D	23072238	23072248	1	35	543.305	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	6	4	6	5	22	28	22	28	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189003	20	23122798	TC	T	720	PASS	-	-	-	-	-	Del	-	D	23122798	23122804	1	45	651.484	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	8	4	8	4	21	28	21	28	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189011	20	23164354	CT	C	540	PASS	-	-	-	-	-	Del	-	D	23164354	23164363	1	30	482.894	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	4	5	5	6	26	34	26	34	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189020	20	23222037	GT	G	660	PASS	-	-	-	-	-	Del	-	D	23222037	23222045	1	42	595.89	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	5	7	6	32	26	32	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189118	20	23564722	TA	T	480	PASS	-	-	-	-	-	Del	-	D	23564722	23564731	1	21	435.126	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	6	2	7	2	36	7	36	7	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189218	20	24061790	GC	G	420	PASS	-	-	-	-	-	Del	-	D	24061790	24061796	1	18	380.735	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	2	6	3	26	26	26	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189230	20	24117889	CA	C	300	PASS	-	-	-	-	-	Del	-	D	24117889	24117897	1	12	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	5	26	23	26	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189282	20	24322674	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	24322674	24322679	2	15	326.344	-	-	2	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	2	5	2	30	18	30	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189348	20	24591087	C	CG	360	PASS	TMEM90B	CCDS13164.1	r.?	-	-	Ins	intronic	I	24591087	24591095	1	16	322.13	-	-	7	1	1	TMEM90B|CCDS13164.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM90B|CCDS13164.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	4	4	30	26	30	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189355	20	24620826	TG	T	298	PASS	TMEM90B	CCDS13164.1	r.?	-	-	Del	intronic	D	24620826	24620832	1	16	320.324	-	-	5	1	1	TMEM90B|CCDS13164.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM90B|CCDS13164.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	3	5	3	13	19	13	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189374	20	24724033	AC	A	300	PASS	-	-	-	-	-	Del	-	D	24724033	24724041	1	10	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	5	2	25	31	25	31	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189390	20	24777168	GA	G	300	PASS	-	-	-	-	-	Del	-	D	24777168	24777174	1	12	271.954	-	-	5	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	5	2	29	13	29	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189540	20	25383088	CT	C	300	PASS	-	-	-	-	-	Del	-	D	25383088	25383093	1	12	268.943	-	-	4	1	1	-	-	./.	0	0	0	0	11	10	11	15	0	0	./.	2	3	4	3	35	18	35	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189549	20	25403067	C	CA	300	PASS	GINS1	CCDS33451.1	r.?	-	-	Ins	intronic	I	25403067	25403077	1	12	255.698	-	-	9	1	-	GINS1|CCDS33451.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GINS1|CCDS33451.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	2	3	4	3	31	23	33	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189592	20	25556381	C	CA	300	PASS	NINL	CCDS33452.1	r.?	-	-	Ins	intronic	I	25556381	25556390	1	6	268.943	-	-	8	1	1	NINL|CCDS33452.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NINL|CCDS33452.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	17	7	18	0	0	./.	5	0	5	0	24	18	24	19	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760189918	20	26057336	CT	C	389	PASS	FAM182A	ENST00000376398	r.?	-	-	Del	intronic	D	26057336	26057346	1	18	380.735	-	-	9	1	1	FAM182A|ENST00000376398|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM182A|ENST00000376398|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	42	27	42	27	0	0	./.	2	5	6	6	32	61	32	61	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760190425	20	29463998	A	AT	271	PASS	-	-	-	-	-	Ins	-	I	29463998	29464004	1	16	322.732	-	-	5	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	3	3	5	4	45	41	46	42	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760191461	20	30470430	T	TA	360	PASS	TTLL9	CCDS42863.1	r.?	-	-	Ins	intronic	I	30470430	30470440	1	15	322.13	-	-	9	1	1	TTLL9|CCDS42863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTLL9|CCDS42863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	4	2	5	12	19	14	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760191650	20	31018439	GT	G	360	PASS	ASXL1	CCDS13201.1	r.?	-	-	Del	intronic	D	31018439	31018448	1	15	326.344	-	-	8	1	1	ASXL1|CCDS13201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL1|CCDS13201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	6	2	24	16	24	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760191707	20	31204141	AAG	A	449	PASS	-	-	-	-	-	Del	-	D	31204141	31204161	2	24	430.309	-	-	9	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	3	6	4	33	35	33	35	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760191831	20	31400868	AT	A	300	PASS	DNMT3B	CCDS13205.1	r.?	-	-	Del	downstream	D	31400868	31400878	1	10	267.739	-	-	9	1	1	DNMT3B|CCDS13205.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DNMT3B|CCDS13205.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	1	10	1	10	0	0	./.	1	4	1	5	1	29	1	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192097	20	32215201	AG	A	449	PASS	CBFA2T2	CCDS13221.1	r.?	-	-	Del	intronic	D	32215201	32215210	1	21	434.524	-	-	8	1	1	CBFA2T2|CCDS13221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CBFA2T2|CCDS13221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	6	2	10	3	23	20	23	20	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192285	20	32765823	CA	C	300	PASS	-	-	-	-	-	Del	-	D	32765823	32765831	1	12	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	2	3	3	5	27	26	27	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192477	20	33260363	C	CA	269	PASS	PIGU	CCDS13239.1	r.?	-	-	Ins	intronic	I	33260363	33260373	1	12	267.739	-	-	9	1	1	PIGU|CCDS13239.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIGU|CCDS13239.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	4	4	26	24	26	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192478	20	33260363	CA	C	298	PASS	PIGU	CCDS13239.1	r.?	-	-	Del	intronic	D	33260363	33260373	1	15	326.344	-	-	9	1	1	PIGU|CCDS13239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIGU|CCDS13239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	2	4	3	4	24	24	24	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192604	20	33549865	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	33549865	33549873	1	15	322.732	-	-	7	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	2	4	2	4	23	29	23	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192650	20	33655839	TA	T	300	PASS	TRPC4AP	CCDS13246.1	r.?	-	-	Del	intronic	D	33655839	33655848	1	12	271.954	-	-	8	1	1	TRPC4AP|CCDS13246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPC4AP|CCDS13246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	21	9	21	0	0	./.	3	2	3	4	26	22	26	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192723	20	33802876	AT	A	269	PASS	-	-	-	-	-	Del	-	D	33802876	33802884	1	12	271.352	-	-	7	1	1	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	2	3	3	3	24	27	24	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192731	20	33824006	GA	G	480	PASS	MMP24	CCDS46593.1	r.?	-	-	Del	intronic	D	33824006	33824015	1	21	435.126	-	-	8	1	1	MMP24|CCDS46593.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MMP24|CCDS46593.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	2	6	3	9	27	27	27	27	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192775	20	33959816	T	TA	300	PASS	UQCC	CCDS13252.1	r.?	-	-	Ins	intronic	I	33959816	33959825	1	10	267.137	-	-	8	1	1	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	1	4	4	24	13	24	13	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192903	20	34360577	TC	T	358	PASS	PHF20	CCDS13268.1	r.?	-	-	Del	intronic	D	34360577	34360587	1	20	375.316	-	-	9	1	1	PHF20|CCDS13268.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PHF20|CCDS13268.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	3	7	6	29	23	29	23	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760192994	20	34601048	G	GA	269	PASS	C20orf152	CCDS13270.1	r.?	-	-	Ins	intronic	I	34601048	34601057	1	10	267.137	-	-	8	1	1	C20orf152|CCDS13270.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C20orf152|CCDS13270.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	1	4	2	6	30	35	30	35	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193018	20	34691079	TG	T	360	PASS	EPB41L1	CCDS13272.1	r.?	-	-	Del	intronic	D	34691079	34691085	1	15	326.344	-	-	5	1	1	EPB41L1|CCDS13272.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EPB41L1|CCDS13272.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	4	5	4	25	27	25	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193084	20	34997679	AT	A	449	PASS	DLGAP4	CCDS13274.1	r.?	-	-	Del	intronic	D	34997679	34997688	1	25	425.493	-	-	8	1	1	DLGAP4|CCDS13274.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DLGAP4|CCDS13274.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	4	4	4	6	26	28	26	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193085	20	34997983	CA	C	360	PASS	DLGAP4	CCDS13274.1	r.?	-	-	Del	intronic	D	34997983	34997990	1	12	326.344	-	-	6	1	1	DLGAP4|CCDS13274.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DLGAP4|CCDS13274.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	1	5	2	7	27	31	27	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193238	20	35463711	TG	T	480	PASS	C20orf117	CCDS46598.1	r.?	-	-	Del	intronic	D	35463711	35463721	1	24	432.115	-	-	9	1	1	C20orf117|CCDS46598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf117|CCDS46598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	5	3	7	4	32	24	32	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193411	20	35806110	AT	A	360	PASS	RPN2	CCDS13291.1	r.?	-	-	Del	upstream	D	35806110	35806115	1	15	326.344	-	-	4	1	1	RPN2|CCDS13291.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C20orf132|ENST00000343811|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	2	4	2	5	8	20	8	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193435	20	35841047	AT	A	360	PASS	RPN2	CCDS13291.1	r.?	-	-	Del	intronic	D	35841047	35841056	1	15	318.517	-	-	8	1	1	RPN2|CCDS13291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPN2|CCDS13291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	4	3	5	10	31	10	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193621	20	36468836	AT	A	480	PASS	CTNNBL1	CCDS13298.1	r.?	-	-	Del	intronic	D	36468836	36468842	1	16	432.717	-	-	5	1	1	CTNNBL1|CCDS13298.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNBL1|CCDS13298.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	1	7	1	8	18	30	18	30	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193789	20	37071466	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	37071466	37071474	1	10	265.933	-	-	7	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	1	4	3	20	24	20	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760193806	20	37120493	A	AT	420	PASS	RALGAPB	CCDS13305.1	r.?	-	-	Ins	intronic	I	37120493	37120497	1	20	374.714	-	-	3	1	1	RALGAPB|CCDS13305.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALGAPB|CCDS13305.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	3	4	4	33	27	33	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194137	20	38067509	AT	A	420	PASS	-	-	-	-	-	Del	-	D	38067509	38067519	1	20	380.735	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	3	4	3	14	24	14	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194280	20	38700235	TA	T	300	PASS	-	-	-	-	-	Del	-	D	38700235	38700243	1	6	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	7	1	17	28	17	28	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194333	20	38942061	GA	G	300	PASS	-	-	-	-	-	Del	-	D	38942061	38942071	1	12	271.954	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	3	3	18	26	18	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194420	20	39576369	AT	A	360	PASS	-	-	-	-	-	Del	-	D	39576369	39576379	1	15	326.344	-	-	9	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	2	4	4	4	30	27	30	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194456	20	39718975	AT	A	569	PASS	TOP1	CCDS13312.1	r.?	-	-	Del	intronic	D	39718975	39718983	1	36	543.907	-	-	7	1	1	TOP1|CCDS13312.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOP1|CCDS13312.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	5	6	6	26	20	26	20	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194462	20	39764985	AG	A	600	PASS	PLCG1	CCDS13313.1	r.?	-	-	Del	upstream	D	39764985	39764995	1	35	537.886	-	-	9	1	1	PLCG1|CCDS13313.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PLCG1|CCDS13313.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	9	6	9	0	0	./.	6	4	7	5	32	21	32	21	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194485	20	39895848	CT	C	389	PASS	ZHX3	CCDS13315.1	r.?	-	-	Del	intronic	D	39895848	39895857	1	20	380.735	-	-	8	1	1	ZHX3|CCDS13315.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZHX3|CCDS13315.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	4	3	4	31	9	31	9	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194504	20	40011971	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	40011971	40011979	1	12	258.106	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	2	3	3	3	24	26	25	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194511	20	40045113	CA	C	420	PASS	CHD6	CCDS13317.1	r.?	-	-	Del	intronic	D	40045113	40045123	1	18	380.735	-	-	9	1	1	CHD6|CCDS13317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD6|CCDS13317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	2	5	2	5	23	21	23	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194700	20	40930101	GT	G	360	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	40930101	40930111	1	16	326.344	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	10	12	0	0	./.	3	3	4	5	18	23	20	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194717	20	40980129	CA	C	420	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	40980129	40980138	1	20	380.735	-	-	8	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	4	5	6	29	23	29	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194815	20	41323110	A	AT	257	PASS	PTPRT	CCDS42874.1	r.?	-	-	Ins	intronic	I	41323110	41323115	1	12	266.535	-	-	4	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	5	4	34	28	34	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194833	20	41384721	TA	T	300	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41384721	41384731	1	12	271.954	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	5	26	30	26	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194835	20	41387253	TA	T	300	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41387253	41387263	1	12	271.954	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	2	3	4	5	33	26	33	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194852	20	41461146	TA	T	389	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41461146	41461156	1	20	380.133	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	3	4	4	8	29	8	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760194880	20	41577255	CA	C	300	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41577255	41577265	1	10	270.749	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	6	1	21	13	21	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195284	20	42606219	TG	T	300	PASS	TOX2	CCDS42875.1	r.?	-	-	Del	intronic	D	42606219	42606221	1	12	271.954	-	-	1	1	1	TOX2|CCDS42875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX2|CCDS42875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	3	2	5	4	27	26	27	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195298	20	42641947	T	TC	300	PASS	TOX2	CCDS42875.1	r.?	-	-	Ins	intronic	I	42641947	42641952	1	12	268.943	-	-	4	1	1	TOX2|CCDS42875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TOX2|CCDS42875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	5	4	32	22	32	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195431	20	42980661	G	GTC	660	PASS	HNF4A	CCDS42876.1	r.?	-	-	Ins	upstream	I	42980661	42980673	2	36	583.246	-	-	5	1	-	HNF4A|CCDS42876.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	HNF4A|CCDS42876.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	12	8	12	0	0	./.	8	3	11	4	32	32	33	32	11	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195436	20	42990344	CA	C	254	PASS	HNF4A	CCDS42876.1	r.?	-	-	Del	intronic	D	42990344	42990354	1	6	271.351	-	-	9	1	-	HNF4A|CCDS42876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HNF4A|CCDS42876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	0	5	2	8	24	30	24	30	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195461	20	43060128	TG	T	360	PASS	HNF4A	CCDS13330.1	r.?	-	-	Del	downstream	D	43060128	43060134	1	15	326.344	-	-	5	1	1	HNF4A|CCDS13330.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	HNF4A|CCDS13330.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	5	11	5	0	0	./.	2	4	3	4	27	22	27	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195476	20	43144640	CT	C	420	PASS	SERINC3	CCDS13333.1	r.?	-	-	Del	intronic	D	43144640	43144649	1	20	380.735	-	-	8	1	1	SERINC3|CCDS13333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SERINC3|CCDS13333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	3	4	3	15	37	15	37	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195562	20	43447356	AT	A	300	PASS	-	-	-	-	-	Del	-	D	43447356	43447363	1	12	271.351	-	-	6	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	2	3	4	5	21	34	21	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195613	20	43611059	AC	A	387	PASS	STK4	CCDS13341.1	r.?	-	-	Del	intronic	D	43611059	43611067	1	25	434.524	-	-	7	1	1	STK4|CCDS13341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK4|CCDS13341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	4	4	6	4	21	16	21	16	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760195959	20	44618106	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	44618106	44618115	1	28	484.098	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	6	3	7	4	25	42	25	42	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760196078	20	45034533	CA	C	300	PASS	ELMO2	CCDS13398.1	r.?	-	-	Del	intronic	D	45034533	45034543	1	12	270.749	-	-	9	1	1	ELMO2|CCDS13398.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ELMO2|CCDS13398.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	5	4	22	38	22	38	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760196084	20	45056518	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	45056518	45056526	1	35	537.886	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	6	4	9	4	36	31	36	32	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760196300	20	45724304	TA	T	300	PASS	EYA2	CCDS13403.1	r.?	-	-	Del	intronic	D	45724304	45724313	1	10	271.954	-	-	8	1	1	EYA2|CCDS13403.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYA2|CCDS13403.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	4	1	6	1	19	5	19	5	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760196488	20	46097818	CT	C	300	PASS	-	-	-	-	-	Del	-	D	46097818	46097828	1	12	269.545	-	-	9	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	3	2	4	2	24	26	24	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760196575	20	46262144	CT	C	600	PASS	NCOA3	CCDS13406.1	r.?	-	-	Del	intronic	D	46262144	46262149	1	35	543.907	-	-	4	1	1	NCOA3|CCDS13406.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCOA3|CCDS13406.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	4	6	6	8	26	26	26	26	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197210	20	47928445	GT	G	300	PASS	-	-	-	-	-	Del	-	D	47928445	47928455	1	12	271.954	-	-	9	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	2	3	2	5	4	26	4	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197316	20	48242746	CT	C	480	PASS	-	-	-	-	-	Del	-	D	48242746	48242756	1	21	435.126	-	-	9	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	6	2	8	26	26	26	26	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197330	20	48274846	A	AG	360	PASS	B4GALT5	CCDS13420.1	r.?	-	-	Ins	intronic	I	48274846	48274853	1	15	322.732	-	-	6	1	1	B4GALT5|CCDS13420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	B4GALT5|CCDS13420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	5	3	26	21	26	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197600	20	48897001	TG	T	480	PASS	-	-	-	-	-	Del	-	D	48897001	48897008	1	24	435.126	-	-	6	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	5	3	6	14	26	14	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197870	20	49520545	GA	G	360	PASS	ADNP	CCDS13433.1	r.564-8delu	c.?	p.?	Del	splice region	D	49520545	49520555	1	15	326.344	-	-	9	1	1	ADNP|CCDS13433.1|r.564-8delu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000159:SO:0001623:SO:CGPX04:SO:0001576	ADNP|CCDS13433.1|r.308delU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	14	18	14	18	0	0	./.	4	2	4	3	22	27	22	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197878	20	49538921	A	AC	300	PASS	ADNP	CCDS13433.1	r.?	-	-	Ins	intronic	I	49538921	49538927	1	12	268.943	-	-	5	1	1	ADNP|CCDS13433.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ADNP|CCDS13433.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	15	0	0	./.	2	3	2	3	27	35	27	35	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197879	20	49539283	AT	A	540	PASS	ADNP	CCDS13433.1	r.?	-	-	Del	intronic	D	49539283	49539292	1	30	488.312	-	-	8	1	1	ADNP|CCDS13433.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ADNP|CCDS13433.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	4	5	6	30	25	30	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197888	20	49548031	A	AG	420	PASS	ADNP	CCDS13433.1	r.?	-	-	Ins	upstream	I	49548031	49548040	1	8	375.316	-	-	8	1	1	ADNP|CCDS13433.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ADNP|CCDS13433.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	7	16	7	0	0	./.	7	0	9	1	33	14	33	14	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197890	20	49550235	AT	A	360	PASS	ADNP	CCDS13433.1	r.?	-	-	Del	upstream	D	49550235	49550245	1	16	326.344	-	-	9	1	1	ADNP|CCDS13433.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ADNP|CCDS13433.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	4	3	34	20	34	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197908	20	49593233	CA	C	420	PASS	-	-	-	-	-	Del	-	D	49593233	49593243	1	20	380.735	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	3	5	5	22	18	22	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197920	20	49624030	G	GT	300	PASS	KCNG1	CCDS13436.1	r.?	-	-	Ins	intronic	I	49624030	49624039	1	12	267.739	-	-	8	1	1	KCNG1|CCDS13436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNG1|CCDS13436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	3	4	18	29	18	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760197979	20	49848346	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	49848346	49848356	1	14	376.521	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	14	9	0	0	./.	6	1	6	2	29	31	29	33	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198354	20	50610423	CA	C	300	PASS	-	-	-	-	-	Del	-	D	50610423	50610433	1	6	271.954	-	-	9	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	0	5	0	6	3	17	3	17	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198360	20	50625651	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	50625651	50625660	1	20	376.521	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	16	13	0	0	./.	3	4	4	4	19	25	19	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198388	20	50681095	CA	C	540	PASS	ZFP64	ENST00000371518	r.?	-	-	Del	intronic	D	50681095	50681104	1	28	489.516	-	-	8	1	1	ZFP64|ENST00000371518|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFP64|ENST00000371518|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	3	6	3	8	18	34	18	34	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198402	20	50696943	TA	T	420	PASS	ZFP64	CCDS13439.1	r.?	-	-	Del	downstream	D	50696943	50696952	1	20	378.327	-	-	8	1	1	ZFP64|CCDS13439.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZFP64|ENST00000371518|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	4	3	6	23	24	23	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198459	20	50821469	GT	G	389	PASS	-	-	-	-	-	Del	-	D	50821469	50821479	1	20	380.735	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	4	5	5	35	26	35	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198586	20	51204075	GA	G	720	PASS	-	-	-	-	-	Del	-	D	51204075	51204085	1	48	649.678	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	7	5	9	28	35	28	35	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198835	20	52003905	AT	A	300	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	52003905	52003910	1	10	271.954	-	-	4	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	1	5	3	29	34	29	34	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198852	20	52042992	CTCT	C	329	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	52042992	52043003	3	15	326.344	-	-	3	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	2	4	3	30	19	30	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198889	20	52144424	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	52144424	52144434	1	10	267.137	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	1	5	2	27	29	27	29	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760198949	20	52239687	CT	C	600	PASS	-	-	-	-	-	Del	-	D	52239687	52239697	1	32	538.489	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	3	7	3	9	11	31	11	31	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199018	20	52365409	TA	T	300	PASS	-	-	-	-	-	Del	-	D	52365409	52365419	1	12	271.954	-	-	9	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	3	3	4	15	20	15	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199020	20	52371283	TA	T	360	PASS	-	-	-	-	-	Del	-	D	52371283	52371290	1	16	326.344	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	4	3	34	23	34	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199076	20	52473781	CA	C	360	PASS	-	-	-	-	-	Del	-	D	52473781	52473787	1	16	326.344	-	-	5	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	3	3	5	14	18	14	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199390	20	53387428	TA	T	269	PASS	-	-	-	-	-	Del	-	D	53387428	53387437	1	12	271.954	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	3	20	25	20	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199400	20	53431388	TA	T	300	PASS	-	-	-	-	-	Del	-	D	53431388	53431396	1	12	271.954	-	-	7	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	3	4	3	20	12	20	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199521	20	53794873	GT	G	360	PASS	-	-	-	-	-	Del	-	D	53794873	53794883	1	16	325.14	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	3	8	6	23	21	23	21	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199584	20	53964967	GT	G	480	PASS	-	-	-	-	-	Del	-	D	53964967	53964971	1	25	435.126	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	4	4	5	28	24	28	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199785	20	54452381	CA	C	360	PASS	-	-	-	-	-	Del	-	D	54452381	54452390	1	12	326.344	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	1	5	2	5	22	26	22	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199823	20	54573004	CT	C	300	PASS	CBLN4	CCDS13448.1	r.2515delA	c.?	p.?	Del	3'UTR variant	D	54573004	54573014	1	12	271.954	-	-	9	1	1	CBLN4|CCDS13448.1|r.2515delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CBLN4|CCDS13448.1|r.2515delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	3	2	12	6	12	6	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199924	20	54908750	C	CA	418	PASS	-	-	-	-	-	Ins	-	I	54908750	54908760	1	9	430.309	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	0	8	0	10	17	25	18	25	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760199936	20	54941117	TC	T	360	PASS	C20orf108	CCDS13450.1	r.454-9delc	c.363-9delc	p.?	Del	splice region	D	54941117	54941124	1	12	326.344	-	-	6	1	1	C20orf108|CCDS13450.1|r.454-9delc|c.363-9delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	C20orf108|CCDS13450.1|r.454-9delc|c.363-9delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	7	8	7	8	0	0	./.	5	1	7	4	38	24	38	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200290	20	55697485	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	55697485	55697493	1	30	482.292	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	5	4	8	23	24	23	24	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200325	20	55807472	GA	G	360	PASS	BMP7	CCDS13455.1	r.?	-	-	Del	intronic	D	55807472	55807482	1	16	326.344	-	-	9	1	1	BMP7|CCDS13455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMP7|CCDS13455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	4	7	22	33	22	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200445	20	56299348	CT	C	480	PASS	-	-	-	-	-	Del	-	D	56299348	56299357	1	24	435.126	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	3	6	4	25	27	25	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200446	20	56307343	AC	A	540	PASS	-	-	-	-	-	Del	-	D	56307343	56307350	1	30	489.516	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	5	9	6	30	24	30	24	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200447	20	56316145	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	56316145	56316152	1	10	268.943	-	-	6	1	1	-	-	./.	0	0	0	0	2	13	2	13	0	0	./.	1	4	1	7	1	35	1	35	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200493	20	56625780	CA	C	300	PASS	-	-	-	-	-	Del	-	D	56625780	56625788	1	6	271.351	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	0	5	1	7	8	26	8	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200592	20	56902754	CA	C	300	PASS	RAB22A	CCDS33497.1	r.?	-	-	Del	intronic	D	56902754	56902763	1	12	271.954	-	-	8	1	1	RAB22A|CCDS33497.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB22A|CCDS33497.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	2	3	20	35	20	35	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200857	20	57753656	GA	G	360	PASS	-	-	-	-	-	Del	-	D	57753656	57753664	1	15	326.344	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	5	3	20	28	20	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760200889	20	57886107	CA	C	540	PASS	EDN3	CCDS13479.1	r.?	-	-	Del	intronic	D	57886107	57886117	1	30	489.516	-	-	9	1	1	EDN3|CCDS13479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EDN3|CCDS13479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	4	5	5	37	29	37	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201063	20	58507743	CA	C	329	PASS	SYCP2	CCDS13482.1	r.?	-	-	Del	intronic	D	58507743	58507753	1	15	317.915	-	-	9	1	1	SYCP2|CCDS13482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYCP2|CCDS13482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	2	9	5	32	26	32	26	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201155	20	58966550	GA	G	360	PASS	-	-	-	-	-	Del	-	D	58966550	58966560	1	12	326.344	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	5	1	5	2	16	22	16	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201259	20	59301096	C	CT	449	PASS	ENSG00000237240	ENST00000456299	r.?	-	-	Ins	intronic	I	59301096	59301105	1	21	424.891	-	-	8	1	1	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	14	15	0	0	./.	2	6	3	8	16	44	16	45	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201314	20	59492325	CA	C	720	PASS	-	-	-	-	-	Del	-	D	59492325	59492334	1	48	652.688	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	7	7	8	30	33	30	33	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201354	20	59703849	TG	T	478	PASS	-	-	-	-	-	Del	-	D	59703849	59703858	1	30	489.516	-	-	8	1	1	-	-	./.	0	0	0	0	9	3	9	3	0	0	./.	4	5	6	6	17	22	17	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201387	20	59810955	CT	C	269	PASS	ENSG00000212701	ENST00000391394	r.?	-	-	Del	intronic	D	59810955	59810961	1	12	271.954	-	-	5	1	1	ENSG00000212701|ENST00000391394|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000212701|ENST00000391394|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	4	3	31	28	31	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201727	20	60810432	CG	C	300	PASS	OSBPL2	CCDS13495.1	r.?	-	-	Del	upstream	D	60810432	60810438	1	12	271.954	-	-	5	1	1	OSBPL2|CCDS13495.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000203951|ENST00000370795|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	5	4	29	33	29	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760201976	20	61713745	A	AC	480	PASS	ENSG00000203905	ENST00000370344	r.?	-	-	Ins	downstream	I	61713745	61713751	1	16	428.503	-	-	5	1	1	ENSG00000203905|ENST00000370344|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000203905|ENST00000370344|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	12	11	12	0	0	./.	1	7	4	9	34	29	34	30	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760202074	20	62080187	TG	T	540	PASS	KCNQ2	CCDS13520.1	r.?	-	-	Del	intronic	D	62080187	62080195	1	28	488.914	-	-	7	1	1	KCNQ2|CCDS13520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ2|CCDS13520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	6	3	9	25	24	25	24	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760202244	20	62485869	CCT	C	420	PASS	TPD52L2	ENST00000369927	r.?	-	-	Del	upstream	D	62485869	62485873	2	20	380.133	-	-	1	1	1	TPD52L2|ENST00000369927|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TPD52L2|ENST00000369927|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	10	9	10	0	0	./.	3	4	5	5	29	26	29	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760202934	21	9667920	TG	T	250	PASS	-	-	-	-	-	Del	-	D	9667920	9667922	1	12	598.201	-	-	1	1	1	-	-	./.	0	0	0	0	29	11	29	11	0	0	./.	11	0	14	0	62	64	62	64	14	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760202977	21	9681971	AT	A	288	PASS	-	-	-	-	-	Del	-	D	9681971	9681978	1	15	326.62	-	-	6	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	4	2	6	3	21	27	21	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760203641	21	10002206	GC	G	251	PASS	-	-	-	-	-	Del	-	D	10002206	10002208	1	11	544.367	-	-	1	1	1	-	-	./.	0	0	0	0	45	41	45	41	0	0	./.	10	0	11	0	114	97	114	97	11	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760204859	21	10877689	CT	C	252	PASS	-	-	-	-	-	Del	-	D	10877689	10877697	1	30	489.93	-	-	7	1	1	-	-	./.	0	0	0	0	36	20	36	20	0	0	./.	5	4	6	6	44	48	44	48	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760204912	21	10936524	A	AT	300	PASS	TPTE	CCDS33512.1	r.?	-	-	Ins	intronic	I	10936524	10936531	1	12	269.173	-	-	6	1	1	TPTE|CCDS33512.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TPTE|CCDS33512.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	27	22	27	0	0	./.	3	2	4	2	56	54	56	55	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206421	21	15895375	AT	A	360	PASS	SAMSN1	CCDS42906.1	r.?	-	-	Del	intronic	D	15895375	15895385	1	12	326.018	-	-	9	1	1	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	5	1	5	1	18	2	18	2	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206427	21	15911177	TA	T	420	PASS	SAMSN1	CCDS42906.1	r.?	-	-	Del	intronic	D	15911177	15911186	1	8	377.444	-	-	8	1	1	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	0	7	0	9	25	28	25	28	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206657	21	16714799	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	16714799	16714808	1	10	269.173	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	7	3	29	19	29	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206662	21	16738329	GA	G	300	PASS	-	-	-	-	-	Del	-	D	16738329	16738338	1	12	272.183	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	3	4	22	34	22	34	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206672	21	16788268	CT	C	360	PASS	-	-	-	-	-	Del	-	D	16788268	16788278	1	16	326.62	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	4	3	26	27	26	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206726	21	17016944	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	17016944	17016952	1	14	373.832	-	-	7	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	1	7	2	40	14	41	14	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206744	21	17083371	CA	C	300	PASS	-	-	-	-	-	Del	-	D	17083371	17083381	1	12	271.581	-	-	9	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	3	2	3	4	23	21	23	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206837	21	17460946	TA	T	300	PASS	-	-	-	-	-	Del	-	D	17460946	17460955	1	10	272.183	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	5	1	21	20	21	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206933	21	17741873	AC	A	360	PASS	-	-	-	-	-	Del	-	D	17741873	17741879	1	7	326.62	-	-	5	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	6	0	6	0	32	4	32	4	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760206980	21	17972997	AT	A	420	PASS	-	-	-	-	-	Del	-	D	17972997	17973006	1	20	381.057	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	6	5	28	24	28	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760207102	21	18401734	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	18401734	18401743	1	15	323.008	-	-	8	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	4	2	32	20	32	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760207250	21	18771302	CT	C	420	PASS	-	-	-	-	-	Del	-	D	18771302	18771311	1	18	381.057	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	2	7	3	37	23	37	23	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760207438	21	19234590	GA	G	540	PASS	CHODL	ENST00000427223	r.?	-	-	Del	intronic	D	19234590	19234600	1	30	489.93	-	-	9	1	1	CHODL|ENST00000427223|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHODL|ENST00000427223|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	5	4	6	5	29	22	29	22	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760207621	21	19787344	GT	G	300	PASS	PRSS7	ENST00000422787	r.?	-	-	Del	intronic	D	19787344	19787354	1	10	272.183	-	-	9	1	1	PRSS7|ENST00000422787|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRSS7|ENST00000422787|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	1	4	38	22	38	22	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760207741	21	20210290	CT	C	300	PASS	-	-	-	-	-	Del	-	D	20210290	20210298	1	12	272.183	-	-	7	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	3	5	4	21	26	21	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760207946	21	20839714	TA	T	300	PASS	-	-	-	-	-	Del	-	D	20839714	20839722	1	10	272.183	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	1	4	2	5	16	26	16	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208003	21	20942783	TA	T	300	PASS	-	-	-	-	-	Del	-	D	20942783	20942791	1	10	272.183	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	4	2	4	21	20	21	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208282	21	21787397	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	21787397	21787406	1	12	267.969	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	2	6	26	25	26	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208364	21	21969753	CT	C	360	PASS	-	-	-	-	-	Del	-	D	21969753	21969762	1	16	326.62	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	3	6	6	20	21	20	21	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208442	21	22197414	GGA	G	360	PASS	-	-	-	-	-	Del	-	D	22197414	22197426	2	15	326.62	-	-	5	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	4	4	4	32	30	32	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208450	21	22219871	GT	G	360	PASS	-	-	-	-	-	Del	-	D	22219871	22219879	1	16	326.62	-	-	7	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	3	3	5	3	25	22	25	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208484	21	22303717	AT	A	300	PASS	-	-	-	-	-	Del	-	D	22303717	22303723	1	6	272.183	-	-	5	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	0	5	1	6	9	26	9	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208758	21	22991393	GT	G	300	PASS	-	-	-	-	-	Del	-	D	22991393	22991403	1	10	272.183	-	-	9	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	4	1	4	6	14	27	14	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208861	21	23333836	AT	A	360	PASS	-	-	-	-	-	Del	-	D	23333836	23333846	1	7	326.62	-	-	9	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	0	6	0	6	6	24	6	24	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208871	21	23346702	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	23346702	23346710	1	18	376.842	-	-	7	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	5	2	6	8	31	8	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760208891	21	23463523	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	23463523	23463533	1	15	321.804	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	16	11	0	0	./.	4	2	4	4	21	40	22	40	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209165	21	24412563	CT	C	300	PASS	-	-	-	-	-	Del	-	D	24412563	24412573	1	6	271.581	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	5	0	7	1	27	1	27	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209179	21	24454306	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	24454306	24454315	1	10	269.173	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	5	1	15	9	15	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209363	21	25100249	AT	A	660	PASS	-	-	-	-	-	Del	-	D	25100249	25100259	1	42	598.201	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	6	6	6	16	21	16	21	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209369	21	25109992	CA	C	300	PASS	-	-	-	-	-	Del	-	D	25109992	25110002	1	12	272.183	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	6	2	30	15	30	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209443	21	25294276	TGA	T	509	PASS	-	-	-	-	-	Del	-	D	25294276	25294285	2	30	483.91	-	-	4	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	4	5	4	29	26	29	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209528	21	25467865	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	25467865	25467873	1	8	376.842	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	0	7	2	7	34	25	34	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209660	21	25892035	CT	C	300	PASS	-	-	-	-	-	Del	-	D	25892035	25892045	1	10	272.183	-	-	9	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	1	4	1	4	15	20	15	20	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209664	21	25899943	CA	C	365	PASS	-	-	-	-	-	Del	-	D	25899943	25899952	1	14	378.649	-	-	8	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	1	6	3	6	4	20	4	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209825	21	26493832	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	26493832	26493843	2	10	270.979	-	-	5	1	1	-	-	./.	0	0	0	0	15	3	15	3	0	0	./.	1	4	1	5	22	31	22	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209859	21	26567564	TA	T	389	PASS	-	-	-	-	-	Del	-	D	26567564	26567572	1	14	381.057	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	6	1	6	4	33	4	33	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760209994	21	27009723	C	CA	360	PASS	JAM2	CCDS42911.1	r.?	-	-	Ins	upstream	I	27009723	27009732	1	15	319.395	-	-	8	1	1	JAM2|CCDS42911.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	2	4	3	5	17	23	17	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760210371	21	27746412	AT	A	480	PASS	-	-	-	-	-	Del	-	D	27746412	27746419	1	24	435.493	-	-	6	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	3	7	3	38	34	38	34	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760210514	21	28174738	AT	A	300	PASS	-	-	-	-	-	Del	-	D	28174738	28174747	1	12	271.581	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	4	28	21	28	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760210903	21	29337910	TA	T	540	PASS	-	-	-	-	-	Del	-	D	29337910	29337920	1	28	489.93	-	-	9	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	3	6	5	6	31	23	31	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211299	21	30590882	AT	A	420	PASS	-	-	-	-	-	Del	-	D	30590882	30590891	1	20	381.057	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	3	5	3	26	20	26	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211450	21	31050989	AT	A	300	PASS	GRIK1	CCDS42913.1	r.?	-	-	Del	intronic	D	31050989	31050998	1	12	269.775	-	-	8	1	1	GRIK1|CCDS42913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK1|CCDS42913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	3	3	30	23	30	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211451	21	31054793	AT	A	300	PASS	GRIK1	CCDS42913.1	r.?	-	-	Del	intronic	D	31054793	31054802	1	12	272.183	-	-	8	1	1	GRIK1|CCDS42913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK1|CCDS42913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	3	6	22	25	22	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211592	21	31535139	GT	G	360	PASS	CLDN17	CCDS13586.1	r.?	-	-	Del	downstream	D	31535139	31535146	1	16	326.62	-	-	6	1	1	CLDN17|CCDS13586.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLDN17|CCDS13586.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	11	17	11	0	0	./.	3	3	3	4	18	23	18	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211607	21	31568949	GA	G	360	PASS	-	-	-	-	-	Del	-	D	31568949	31568959	1	15	326.62	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	4	3	8	19	26	19	26	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211647	21	31685129	TA	T	300	PASS	-	-	-	-	-	Del	-	D	31685129	31685137	1	12	272.183	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	4	21	18	21	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211738	21	31945215	GT	G	420	PASS	-	-	-	-	-	Del	-	D	31945215	31945221	1	20	381.057	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	4	3	5	3	30	24	30	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760211915	21	32506396	C	CA	360	PASS	TIAM1	CCDS13609.1	r.?	-	-	Ins	intronic	I	32506396	32506404	1	16	323.008	-	-	7	1	-	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	3	3	4	5	35	19	36	19	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212132	21	32964436	TA	T	360	PASS	-	-	-	-	-	Del	-	D	32964436	32964445	1	15	326.62	-	-	8	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	4	4	25	23	25	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212150	21	32997121	CT	C	420	PASS	-	-	-	-	-	Del	-	D	32997121	32997125	1	20	380.455	-	-	3	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	4	4	25	22	25	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212171	21	33030692	TA	T	360	PASS	SOD1	CCDS33536.1	r.?	-	-	Del	upstream	D	33030692	33030700	1	16	326.62	-	-	7	1	1	SOD1|CCDS33536.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SOD1|CCDS33536.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	18	18	18	0	0	./.	3	3	4	5	25	17	25	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212184	21	33063148	CA	C	300	PASS	SFRS15	CCDS33537.1	r.2229delU	c.1846delT	p.C616fs*60	Del	frameshift	D	33063148	33063154	1	12	272.183	-	-	5	1	1	SFRS15|CCDS33537.1|r.2229delU|c.1846delT|p.C616fs*60|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SFRS15|CCDS33537.1|r.2229delU|c.1846delT|p.C616fs*60|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	4	3	22	25	22	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212285	21	33294336	CT	C	360	PASS	HUNK	CCDS13610.1	r.?	-	-	Del	intronic	D	33294336	33294346	1	12	326.62	-	-	9	1	1	HUNK|CCDS13610.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HUNK|CCDS13610.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	1	5	3	6	28	35	28	35	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212455	21	33655482	GGA	G	300	PASS	C21orf45	CCDS13611.1	r.?	-	-	Del	upstream	D	33655482	33655496	2	12	272.183	-	-	6	1	1	C21orf45|CCDS13611.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C21orf45|CCDS13611.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	4	2	28	20	28	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212567	21	33857501	CT	C	660	PASS	C21orf63	CCDS13614.1	r.?	-	-	Del	intronic	D	33857501	33857511	1	36	596.997	-	-	9	1	1	C21orf63|CCDS13614.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C21orf63|CCDS13614.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	8	3	9	25	42	25	42	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212677	21	34222880	CA	C	300	PASS	-	-	-	-	-	Del	-	D	34222880	34222888	1	6	272.183	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	0	8	0	26	12	26	12	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760212859	21	34650795	G	GT	300	PASS	IL10RB	CCDS13623.1	r.?	-	-	Ins	intronic	I	34650795	34650801	1	12	269.173	-	-	5	1	1	IL10RB|CCDS13623.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL10RB|CCDS13623.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	19	11	0	0	./.	2	3	4	3	25	22	25	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213002	21	34899821	GA	G	300	PASS	GART	CCDS13627.1	r.?	-	-	Del	intronic	D	34899821	34899831	1	12	272.183	-	-	9	1	1	GART|CCDS13627.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GART|CCDS13627.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	5	2	28	21	28	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213117	21	35123411	CT	C	360	PASS	ITSN1	CCDS33545.1	r.?	-	-	Del	intronic	D	35123411	35123419	1	15	326.62	-	-	7	1	1	ITSN1|CCDS33545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITSN1|CCDS33545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	4	3	5	22	21	22	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213179	21	35308228	GA	G	360	PASS	-	-	-	-	-	Del	-	D	35308228	35308238	1	15	325.416	-	-	9	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	4	2	5	3	25	22	25	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213183	21	35312956	GA	G	360	PASS	-	-	-	-	-	Del	-	D	35312956	35312964	1	15	326.62	-	-	7	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	4	2	5	2	24	10	24	10	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213226	21	35429928	GT	G	360	PASS	-	-	-	-	-	Del	-	D	35429928	35429938	1	16	326.62	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	3	3	3	4	22	29	22	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213227	21	35440074	AT	A	540	PASS	-	-	-	-	-	Del	-	D	35440074	35440084	1	30	489.93	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	4	5	5	7	23	30	23	30	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213267	21	35530172	AT	A	420	PASS	-	-	-	-	-	Del	-	D	35530172	35530181	1	20	380.455	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	4	4	5	31	38	31	38	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213296	21	35649437	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	35649437	35649445	1	12	269.173	-	-	7	1	1	-	-	./.	0	0	0	0	7	16	7	17	0	0	./.	2	3	3	3	31	32	31	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213347	21	35809838	CT	C	300	PASS	-	-	-	-	-	Del	-	D	35809838	35809848	1	10	272.183	-	-	9	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	1	4	3	8	15	33	15	33	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760213587	21	36622160	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	36622160	36622167	1	20	376.842	-	-	6	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	4	3	4	3	33	18	34	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214094	21	37936069	C	CA	300	PASS	CLDN14	CCDS13645.1	r.?	-	-	Ins	intronic	I	37936069	37936075	1	10	269.173	-	-	5	1	1	CLDN14|CCDS13645.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CLDN14|CCDS13645.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	1	4	2	4	20	33	20	33	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214186	21	38204332	GA	G	480	PASS	HLCS	CCDS13647.1	r.?	-	-	Del	intronic	D	38204332	38204341	1	24	435.493	-	-	8	1	1	HLCS|CCDS13647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HLCS|CCDS13647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	3	6	3	29	20	29	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214225	21	38296530	AT	A	420	PASS	HLCS	CCDS13647.1	r.?	-	-	Del	intronic	D	38296530	38296539	1	18	381.057	-	-	8	1	1	HLCS|CCDS13647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HLCS|CCDS13647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	5	2	5	2	23	26	23	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214515	21	39011738	AT	A	420	PASS	KCNJ6	CCDS42927.1	r.?	-	-	Del	intronic	D	39011738	39011748	1	18	381.057	-	-	9	1	1	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	5	3	6	23	29	23	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214659	21	39296995	AT	A	300	PASS	-	-	-	-	-	Del	-	D	39296995	39297003	1	10	272.183	-	-	7	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	1	5	2	27	22	27	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214722	21	39520166	GT	G	420	PASS	DSCR8	ENST00000357704	r.?	-	-	Del	intronic	D	39520166	39520174	1	18	381.057	-	-	7	1	1	DSCR8|ENST00000357704|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSCR8|ENST00000357704|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	5	3	5	26	28	26	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214846	21	39941093	TC	T	420	PASS	ERG	CCDS13657.1	r.?	-	-	Del	intronic	D	39941093	39941102	1	14	380.455	-	-	8	1	1	ERG|CCDS13657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERG|CCDS13657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	6	1	6	21	26	21	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214867	21	40021009	GA	G	420	PASS	ERG	CCDS13657.1	r.?	-	-	Del	intronic	D	40021009	40021016	1	20	381.057	-	-	6	1	1	ERG|CCDS13657.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ERG|CCDS13657.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	4	3	4	3	25	31	25	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214889	21	40099580	TC	T	660	PASS	-	-	-	-	-	Del	-	D	40099580	40099588	1	36	598.804	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	8	5	9	25	26	25	26	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214911	21	40188760	GT	G	540	PASS	ETS2	CCDS13659.1	r.?	-	-	Del	intronic	D	40188760	40188767	1	28	489.93	-	-	6	1	1	ETS2|CCDS13659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ETS2|CCDS13659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	6	3	7	3	27	32	27	32	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214937	21	40259306	TTACA	T	418	PASS	-	-	-	-	-	Del	-	D	40259306	40259316	4	24	435.493	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	5	4	5	30	27	30	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760214967	21	40308472	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	40308472	40308482	1	25	430.677	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	8	15	0	0	./.	4	4	6	5	20	21	20	22	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760215176	21	40740636	CT	C	329	PASS	-	-	-	-	-	Del	-	D	40740636	40740646	1	15	326.62	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	2	7	3	33	13	33	13	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760215558	21	41789759	CA	C	300	PASS	DSCAM	CCDS42929.1	r.?	-	-	Del	intronic	D	41789759	41789769	1	12	272.183	-	-	9	1	1	DSCAM|CCDS42929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSCAM|CCDS42929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	2	4	17	7	17	7	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760215841	21	42556261	CT	C	480	PASS	BACE2	CCDS13668.1	r.?	-	-	Del	intronic	D	42556261	42556270	1	24	434.289	-	-	8	1	1	BACE2|CCDS13668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BACE2|CCDS13668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	4	6	28	26	28	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760215868	21	42725876	GA	G	420	PASS	FAM3B	CCDS13671.1	r.?	-	-	Del	intronic	D	42725876	42725883	1	20	381.057	-	-	6	1	1	FAM3B|CCDS13671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM3B|CCDS13671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	4	3	4	5	14	24	14	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216162	21	43519431	TC	T	360	PASS	UMODL1	CCDS42935.1	r.?	-	-	Del	intronic	D	43519431	43519435	1	16	326.018	-	-	3	1	1	UMODL1|CCDS42935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UMODL1|CCDS42935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	8	3	8	0	0	./.	3	3	3	5	32	20	32	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216197	21	43622548	TG	T	480	PASS	ABCG1	CCDS42937.1	r.?	-	-	Del	intronic	D	43622548	43622553	1	24	435.493	-	-	4	1	1	ABCG1|CCDS42937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCG1|CCDS42937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	5	3	7	4	25	23	25	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216258	21	43880371	A	ATG	300	PASS	-	-	-	-	-	Ins	-	I	43880371	43880383	2	6	265.561	-	-	5	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	0	5	1	6	32	35	32	35	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216426	21	44281265	CA	C	337	PASS	WDR4	CCDS13691.1	r.?	-	-	Del	intronic	D	44281265	44281275	1	15	326.62	-	-	9	1	1	WDR4|CCDS13691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR4|CCDS13691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	2	5	11	26	11	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216637	21	44788793	ATG	A	329	PASS	-	-	-	-	-	Del	-	D	44788793	44788802	2	16	314.579	-	-	4	1	-	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	3	6	3	23	19	23	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216683	21	44953375	C	CT	300	PASS	HSF2BP	CCDS13697.1	r.?	-	-	Ins	intronic	I	44953375	44953384	1	12	269.173	-	-	8	1	1	HSF2BP|CCDS13697.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HSF2BP|CCDS13697.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	4	5	17	39	17	39	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216820	21	45241076	CA	C	360	PASS	-	-	-	-	-	Del	-	D	45241076	45241084	1	16	326.018	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	5	3	17	21	17	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216874	21	45387313	CT	C	300	PASS	AGPAT3	CCDS13703.1	r.?	-	-	Del	intronic	D	45387313	45387322	1	12	272.183	-	-	8	1	1	AGPAT3|CCDS13703.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGPAT3|CCDS13703.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	3	27	22	27	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216897	21	45482199	CT	C	360	PASS	TRAPPC10	CCDS13704.1	r.?	-	-	Del	intronic	D	45482199	45482207	1	15	326.62	-	-	7	1	1	TRAPPC10|CCDS13704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC10|CCDS13704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	4	2	5	2	23	30	23	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760216899	21	45486396	C	CT	600	PASS	TRAPPC10	CCDS13704.1	r.?	-	-	Ins	intronic	I	45486396	45486406	1	32	534.132	-	-	9	1	1	TRAPPC10|CCDS13704.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAPPC10|CCDS13704.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	7	3	7	4	44	33	45	33	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217066	21	46090991	TC	T	300	PASS	C21orf29	CCDS13712.1	r.?	-	-	Del	intronic	D	46090991	46090999	1	10	271.581	-	-	7	1	1	C21orf29|CCDS13712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C21orf29|CCDS13712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	5	1	21	21	21	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217077	21	46140667	AC	A	540	PASS	-	-	-	-	-	Del	-	D	46140667	46140673	1	30	489.93	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	5	5	6	42	26	42	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217093	21	46197984	GT	G	360	PASS	UBE2G2	CCDS13714.1	r.?	-	-	Del	intronic	D	46197984	46197991	1	7	326.62	-	-	6	1	1	UBE2G2|CCDS13714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2G2|CCDS13714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	6	0	6	0	32	1	32	1	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217132	21	46327017	AG	A	300	PASS	ITGB2	CCDS13716.1	r.446-8delc	c.148-8delc	p.?	Del	splice region	D	46327017	46327023	1	12	272.183	-	-	5	1	1	ITGB2|CCDS13716.1|r.446-8delc|c.148-8delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	ITGB2|CCDS13716.1|r.446-8delc|c.148-8delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	3	4	15	19	15	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217152	21	46381151	CT	C	360	PASS	C21orf70	CCDS13718.1	r.?	-	-	Del	intronic	D	46381151	46381161	1	12	326.62	-	-	9	1	1	C21orf70|CCDS13718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C21orf70|CCDS13718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	1	7	3	30	27	30	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217252	21	46654470	TG	T	420	PASS	-	-	-	-	-	Del	-	D	46654470	46654475	1	20	378.649	-	-	4	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	4	3	5	4	24	22	24	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217483	21	47491839	CT	C	480	PASS	-	-	-	-	-	Del	-	D	47491839	47491847	1	24	430.075	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	3	6	3	38	27	38	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217552	21	47644875	C	CA	300	PASS	LSS	CCDS13733.1	r.?	-	-	Ins	intronic	I	47644875	47644881	1	10	267.969	-	-	5	1	1	LSS|CCDS13733.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LSS|CCDS13733.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	5	2	20	22	20	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217701	21	47887876	T	TA	300	PASS	DIP2A	CCDS46655.1	r.?	-	-	Ins	intronic	I	47887876	47887883	1	6	269.173	-	-	6	1	1	DIP2A|CCDS46655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIP2A|CCDS46655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	0	5	2	6	23	23	23	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760217731	21	47926038	CT	C	480	PASS	DIP2A	CCDS46655.1	r.?	-	-	Del	intronic	D	47926038	47926048	1	25	432.483	-	-	9	1	1	DIP2A|CCDS46655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIP2A|CCDS46655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	4	8	4	24	24	24	24	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760218065	22	16933956	AG	A	297	PASS	-	-	-	-	-	Del	-	D	16933956	16933964	1	20	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	4	3	6	8	51	8	51	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760218586	22	17741578	CT	C	360	PASS	CECR1	ENST00000366217	r.?	-	-	Del	upstream	D	17741578	17741586	1	15	326.358	-	-	7	1	1	CECR1|ENST00000366217|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CECR1|ENST00000366217|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	5	15	5	0	0	./.	2	4	4	6	24	29	24	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760218743	22	18104916	GA	G	420	PASS	ATP6V1E1	CCDS13745.1	r.?	-	-	Del	intronic	D	18104916	18104925	1	20	382.156	-	-	8	1	1	ATP6V1E1|CCDS13745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP6V1E1|CCDS13745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	4	5	22	40	22	40	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760218913	22	18498734	AT	A	540	PASS	ENSG00000093100	CCDS46659.1	r.?	-	-	Del	intronic	D	18498734	18498741	1	24	491.343	-	-	6	1	1	ENSG00000093100|CCDS46659.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000093100|CCDS46659.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	7	2	8	5	29	22	29	22	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760218940	22	18537958	AT	A	269	PASS	-	-	-	-	-	Del	-	D	18537958	18537967	1	10	272.366	-	-	8	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	1	4	3	6	27	27	27	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219190	22	19147383	GT	G	600	PASS	-	-	-	-	-	Del	-	D	19147383	19147392	1	27	544.733	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	8	2	9	5	30	21	30	21	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219265	22	19323613	CA	C	540	PASS	HIRA	CCDS13759.1	r.?	-	-	Del	intronic	D	19323613	19323623	1	28	490.741	-	-	9	1	1	HIRA|CCDS13759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HIRA|CCDS13759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	6	3	6	4	32	23	32	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219274	22	19351927	GT	G	360	PASS	HIRA	CCDS13759.1	r.?	-	-	Del	intronic	D	19351927	19351936	1	12	327.562	-	-	8	1	1	HIRA|CCDS13759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HIRA|CCDS13759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	5	1	5	1	35	23	35	23	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219330	22	19534211	AT	A	420	PASS	AC000068.1	ENST00000514976	r.?	-	-	Del	intronic	D	19534211	19534221	1	20	382.156	-	-	9	1	1	AC000068.1|ENST00000514976|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC000068.1|ENST00000514976|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	4	4	4	21	25	21	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219368	22	19637511	C	CAA	420	PASS	ENSG00000227127	ENST00000447432	r.?	-	-	Ins	intronic	I	19637511	19637521	2	20	372.523	-	-	9	1	1	ENSG00000227127|ENST00000447432|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	ENSG00000227127|ENST00000447432|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	18	0	0	./.	4	3	7	5	34	25	35	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219500	22	20093819	TC	T	480	PASS	MIR1306	CCDS13773.1	r.?	-	-	Del	intronic	D	20093819	20093826	1	21	436.148	-	-	6	1	1	MIR1306|CCDS13773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR1306|CCDS13773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	6	5	6	26	20	26	20	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219873	22	21270092	TC	T	397	PASS	CRKL	CCDS13785.1	r.?	-	-	Del	upstream	D	21270092	21270096	1	20	380.952	-	-	3	1	1	CRKL|CCDS13785.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CRKL|CCDS13785.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	3	5	20	20	20	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760219926	22	21348807	CCT	C	300	PASS	LZTR1	CCDS33606.1	r.?	-	-	Del	intronic	D	21348807	21348813	2	12	272.969	-	-	2	1	1	LZTR1|CCDS33606.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LZTR1|CCDS33606.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	2	4	20	27	20	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220047	22	21806941	AT	A	360	PASS	HIC2	CCDS13789.1	r.?	-	-	Del	downstream	D	21806941	21806951	1	7	327.562	-	-	9	1	1	HIC2|CCDS13789.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HIC2|CCDS13789.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	5	12	5	0	0	./.	6	0	8	0	33	0	33	0	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220176	22	22142284	CA	C	540	PASS	MAPK1	CCDS13795.1	r.?	-	-	Del	intronic	D	22142284	22142294	1	28	491.343	-	-	9	1	1	MAPK1|CCDS13795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAPK1|CCDS13795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	6	4	8	26	34	26	34	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220181	22	22153426	G	GA	480	PASS	MAPK1	CCDS13795.1	r.682-10_682-9insu	c.493-10_493-9insT	p.?	Ins	splice region	I	22153426	22153435	1	21	431.933	-	-	8	1	1	MAPK1|CCDS13795.1|r.682-10_682-9insu|c.493-10_493-9insT|p.?|protein_coding:CDS:extended_intronic_splice_region:insertion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000667:SO:CGPX04:SO:0001576	MAPK1|CCDS13795.1|r.682-10_682-9insu|c.493-10_493-9insT|p.?|protein_coding:CDS:extended_intronic_splice_region:insertion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000667:SO:CGPX04:SO:0001576	./.	0	0	0	0	8	16	8	17	0	0	./.	2	6	2	8	27	35	28	35	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220339	22	22510746	TA	T	420	PASS	-	-	-	-	-	Del	-	D	22510746	22510756	1	18	379.748	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	5	3	7	19	40	19	40	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220391	22	22586710	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	22586710	22586719	1	12	268.152	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	3	4	20	27	20	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220505	22	22866548	G	GT	420	PASS	ZNF280B	CCDS13799.1	r.?	-	-	Ins	upstream	I	22866548	22866557	1	14	377.942	-	-	8	1	1	ZNF280B|CCDS13799.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZNF280B|CCDS13799.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	13	10	13	0	0	./.	6	1	7	2	26	24	26	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760220886	22	23862906	AG	A	449	PASS	-	-	-	-	-	Del	-	D	23862906	23862913	1	24	435.546	-	-	6	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	5	3	6	4	30	18	30	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221019	22	24102440	AC	A	329	PASS	C22orf15	CCDS13814.2	r.?	-	-	Del	upstream	D	24102440	24102447	1	15	326.358	-	-	6	1	1	C22orf15|CCDS13814.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C22orf15|CCDS13814.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	7	8	7	0	0	./.	2	4	2	5	19	26	19	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221096	22	24216810	AT	A	343	PASS	SLC2A11	CCDS46673.1	r.?	-	-	Del	intronic	D	24216810	24216819	1	20	382.156	-	-	8	1	1	SLC2A11|CCDS46673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC2A11|CCDS46673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	3	4	3	31	28	31	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221155	22	24455862	ATTC	A	269	PASS	CABIN1	CCDS13823.1	r.?	-	-	Del	intronic	D	24455862	24455872	3	12	272.969	-	-	3	1	1	CABIN1|CCDS13823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CABIN1|CCDS13823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	6	31	24	31	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221182	22	24599170	CA	C	480	PASS	-	-	-	-	-	Del	-	D	24599170	24599180	1	25	436.75	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	4	4	4	36	30	36	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221207	22	24678629	A	AT	300	PASS	CYTSA	CCDS33619.1	r.?	-	-	Ins	intronic	I	24678629	24678637	1	6	268.754	-	-	7	1	1	CYTSA|CCDS33619.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CYTSA|CCDS33619.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	10	0	0	./.	5	0	6	1	27	25	28	26	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221248	22	24872572	AT	A	269	PASS	C22orf45	ENST00000326341	r.?	-	-	Del	intronic	D	24872572	24872582	1	10	272.969	-	-	9	1	1	C22orf45|ENST00000326341|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C22orf45|ENST00000326341|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	2	6	16	34	16	34	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221291	22	24983086	GT	G	300	PASS	GGT1	CCDS42992.1	r.?	-	-	Del	intronic	D	24983086	24983094	1	12	272.969	-	-	7	1	1	GGT1|CCDS42992.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GGT1|CCDS42992.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	5	3	20	33	20	33	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221297	22	24993352	G	GT	509	PASS	GGT1	CCDS42992.1	r.?	-	-	Ins	intronic	I	24993352	24993359	1	18	485.323	-	-	6	1	1	GGT1|CCDS42992.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GGT1|CCDS42992.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	8	1	9	4	26	32	26	33	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221549	22	25501711	CT	C	420	PASS	KIAA1671	CCDS46676.1	r.?	-	-	Del	intronic	D	25501711	25501716	1	14	379.748	-	-	4	1	1	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	1	8	2	29	15	29	15	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221581	22	25598073	GCTT	G	569	PASS	KIAA1671	CCDS46676.1	r.?	-	-	Del	downstream	D	25598073	25598080	3	36	541.121	-	-	2	1	1	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CRYBB3|CCDS13830.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	5	5	6	5	33	33	33	33	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221636	22	25682531	C	CA	251	PASS	-	-	-	-	-	Ins	-	I	25682531	25682538	1	35	537.508	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	11	0	0	./.	6	4	8	5	32	31	32	31	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221851	22	26255653	AT	A	420	PASS	MYO18B	ENST00000335473	r.?	-	-	Del	intronic	D	26255653	26255662	1	20	382.156	-	-	8	1	1	MYO18B|ENST00000335473|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO18B|ENST00000335473|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	3	5	25	15	25	15	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760221929	22	26558775	TA	T	420	PASS	-	-	-	-	-	Del	-	D	26558775	26558783	1	20	382.156	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	4	4	5	30	25	30	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222004	22	26820170	CT	C	360	PASS	-	-	-	-	-	Del	-	D	26820170	26820179	1	12	325.154	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	1	7	2	28	7	28	7	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222134	22	27079698	AT	A	420	PASS	-	-	-	-	-	Del	-	D	27079698	27079708	1	20	380.952	-	-	9	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	4	3	5	6	26	23	26	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222179	22	27191349	AT	A	360	PASS	-	-	-	-	-	Del	-	D	27191349	27191355	1	15	327.562	-	-	5	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	4	2	5	2	25	25	25	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222384	22	27750722	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	27750722	27750731	1	12	261.529	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	15	0	0	./.	2	3	5	5	31	33	31	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222415	22	27819579	AT	A	480	PASS	-	-	-	-	-	Del	-	D	27819579	27819588	1	25	436.75	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	4	4	4	4	16	17	16	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222452	22	27932592	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	27932592	27932600	1	12	269.958	-	-	7	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	3	2	5	4	27	29	28	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222537	22	28187115	AG	A	480	PASS	MN1	CCDS42998.1	r.?	-	-	Del	intronic	D	28187115	28187122	1	24	434.943	-	-	6	1	1	MN1|CCDS42998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MN1|CCDS42998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	5	4	6	22	24	22	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222612	22	28628345	CA	C	360	PASS	TTC28	CCDS46678.1	r.?	-	-	Del	intronic	D	28628345	28628354	1	16	327.562	-	-	8	1	1	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	4	5	22	21	22	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222747	22	29154134	GTC	G	300	PASS	HSCB	CCDS13845.1	r.?	-	-	Del	downstream	D	29154134	29154140	2	12	271.764	-	-	2	1	1	HSCB|CCDS13845.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HSCB|CCDS13845.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	3	3	15	23	15	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760222846	22	29423945	A	AG	480	PASS	ZNRF3	CCDS42999.1	r.?	-	-	Ins	intronic	I	29423945	29423952	1	24	431.933	-	-	6	1	1	ZNRF3|CCDS42999.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNRF3|CCDS42999.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	3	5	4	28	29	28	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223138	22	30026369	CA	C	420	PASS	NF2	CCDS13861.1	r.?	-	-	Del	intronic	D	30026369	30026378	1	14	382.156	-	-	8	1	1	NF2|CCDS13861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NF2|CCDS13861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	1	6	2	7	18	29	18	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223254	22	30302008	AT	A	480	PASS	MTMR3	CCDS13871.1	r.?	-	-	Del	intronic	D	30302008	30302017	1	24	436.75	-	-	8	1	1	MTMR3|CCDS13871.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MTMR3|CCDS13871.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	5	3	5	5	24	23	24	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223407	22	30804417	CA	C	269	PASS	SEC14L2	CCDS13876.1	r.?	-	-	Del	intronic	D	30804417	30804426	1	12	271.764	-	-	8	1	1	SEC14L2|CCDS13876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC14L2|CCDS13876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	2	3	23	19	23	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223409	22	30808246	CA	C	300	PASS	SEC14L2	CCDS13876.1	r.?	-	-	Del	intronic	D	30808246	30808255	1	10	271.764	-	-	8	1	1	SEC14L2|CCDS13876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC14L2|CCDS13876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	1	4	1	5	19	31	19	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223507	22	31062796	TA	T	360	PASS	DUSP18	CCDS13883.1	r.1051delU	c.?	p.?	Del	5'UTR variant	D	31062796	31062801	1	15	326.358	-	-	4	1	1	DUSP18|CCDS13883.1|r.1051delU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	DUSP18|CCDS13883.1|r.1051delU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	14	16	14	16	0	0	./.	4	2	6	3	26	14	26	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223582	22	31219974	GT	G	420	PASS	OSBP2	CCDS43002.1	r.?	-	-	Del	intronic	D	31219974	31219983	1	18	380.952	-	-	8	1	1	OSBP2|CCDS43002.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBP2|CCDS43002.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	5	5	6	30	40	30	40	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223899	22	31913644	CT	C	420	PASS	SFI1	CCDS43005.1	r.?	-	-	Del	intronic	D	31913644	31913654	1	20	382.156	-	-	9	1	1	SFI1|CCDS43005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFI1|CCDS43005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	3	4	5	6	35	31	35	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760223903	22	31920792	AT	A	509	PASS	SFI1	CCDS43005.1	r.?	-	-	Del	intronic	D	31920792	31920802	1	24	491.343	-	-	9	1	1	SFI1|CCDS43005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFI1|CCDS43005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	7	2	8	3	34	9	34	9	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224049	22	32334104	G	GA	300	PASS	C22orf24	CCDS46693.1	r.119-4_119-3insu	c.?	p.?	Ins	splice region	I	32334104	32334114	1	10	269.958	-	-	9	1	1	C22orf24|CCDS46693.1|r.119-4_119-3insu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:insertion:5_prime_UTR_variant:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000667:SO:0001623:SO:CGPX04:SO:0001576	C22orf24|CCDS46693.1|r.119-4_119-3insu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:insertion:5_prime_UTR_variant:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000667:SO:0001623:SO:CGPX04:SO:0001576	./.	0	0	0	0	10	14	11	14	0	0	./.	1	4	3	5	31	33	31	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224050	22	32334104	GA	G	360	PASS	C22orf24	CCDS46693.1	r.119-4delu	c.?	p.?	Del	splice region	D	32334104	32334114	1	12	327.562	-	-	9	1	1	C22orf24|CCDS46693.1|r.119-4delu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000159:SO:0001623:SO:CGPX04:SO:0001576	C22orf24|CCDS46693.1|r.119-4delu|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000159:SO:0001623:SO:CGPX04:SO:0001576	./.	0	0	0	0	10	14	10	14	0	0	./.	1	5	3	6	30	32	30	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224076	22	32369192	CT	C	300	PASS	-	-	-	-	-	Del	-	D	32369192	32369197	1	12	272.366	-	-	4	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	3	25	28	25	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224140	22	32577373	AC	A	360	PASS	-	-	-	-	-	Del	-	D	32577373	32577381	1	16	327.562	-	-	7	1	1	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	3	3	4	4	20	30	20	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224244	22	32813339	AT	A	660	PASS	BPIL2	CCDS13906.1	r.?	-	-	Del	intronic	D	32813339	32813348	1	40	599.929	-	-	8	1	1	BPIL2|CCDS13906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BPIL2|CCDS13906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	7	4	8	4	27	23	27	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224288	22	32912865	T	TA	420	PASS	SYN3	CCDS13908.1	r.?	-	-	Ins	intronic	I	32912865	32912874	1	20	377.942	-	-	8	1	1	SYN3|CCDS13908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYN3|CCDS13908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	3	5	3	30	24	30	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224425	22	33227833	AC	A	300	PASS	TIMP3	CCDS13911.1	r.?	-	-	Del	intronic	D	33227833	33227842	1	10	272.969	-	-	8	1	1	TIMP3|CCDS13911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TIMP3|CCDS13911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	5	1	25	28	25	28	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224442	22	33267225	TA	T	360	PASS	SYN3	CCDS13908.1	r.?	-	-	Del	intronic	D	33267225	33267233	1	12	327.562	-	-	7	1	1	SYN3|CCDS13908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYN3|CCDS13908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	1	5	1	6	10	36	10	36	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224658	22	33830825	GC	G	420	PASS	LARGE	CCDS13912.1	r.?	-	-	Del	intronic	D	33830825	33830833	1	18	380.952	-	-	7	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	5	6	5	30	27	30	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224666	22	33860528	CA	C	480	PASS	LARGE	CCDS13912.1	r.?	-	-	Del	intronic	D	33860528	33860537	1	16	431.331	-	-	8	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	7	1	7	1	25	20	25	20	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224737	22	34026184	C	CA	360	PASS	LARGE	CCDS13912.1	r.?	-	-	Ins	intronic	I	34026184	34026194	1	12	323.95	-	-	9	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	1	7	2	29	26	30	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224799	22	34181634	GA	G	300	PASS	LARGE	CCDS13912.1	r.?	-	-	Del	intronic	D	34181634	34181643	1	12	272.969	-	-	8	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	2	3	4	4	24	18	24	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224841	22	34268831	C	CA	540	PASS	LARGE	CCDS13912.1	r.?	-	-	Ins	intronic	I	34268831	34268839	1	24	485.925	-	-	7	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	7	2	9	2	31	15	31	16	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224863	22	34324910	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	34324910	34324918	1	10	269.356	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	1	5	3	31	30	31	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760224901	22	34428578	AT	A	360	PASS	ENSG00000230919	ENST00000412664	r.?	-	-	Del	upstream	D	34428578	34428587	1	16	327.562	-	-	8	1	1	ENSG00000230919|ENST00000412664|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000230919|ENST00000412664|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	15	18	15	0	0	./.	3	3	4	3	20	11	20	11	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225052	22	34785309	AT	A	360	PASS	-	-	-	-	-	Del	-	D	34785309	34785319	1	16	327.562	-	-	9	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	3	3	3	5	28	35	28	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225103	22	34960113	AT	A	420	PASS	-	-	-	-	-	Del	-	D	34960113	34960121	1	14	382.156	-	-	7	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	6	1	8	1	32	14	32	14	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225284	22	35477852	CT	C	360	PASS	ISX	CCDS33640.1	r.?	-	-	Del	intronic	D	35477852	35477858	1	16	327.562	-	-	5	1	1	ISX|CCDS33640.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ISX|CCDS33640.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	3	3	5	2	27	25	27	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225410	22	35784806	CA	C	420	PASS	HMOX1	CCDS13914.1	r.?	-	-	Del	intronic	D	35784806	35784816	1	18	382.156	-	-	9	1	1	HMOX1|CCDS13914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMOX1|CCDS13914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	5	7	5	36	21	36	21	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225460	22	35856299	GA	G	457	PASS	-	-	-	-	-	Del	-	D	35856299	35856309	1	25	433.137	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	4	8	7	29	35	29	35	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225507	22	35988839	TTCTC	T	300	PASS	-	-	-	-	-	Del	-	D	35988839	35988851	4	12	272.366	-	-	5	1	-	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	2	3	2	5	29	28	29	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225582	22	36121324	GT	G	480	PASS	APOL5	CCDS13920.1	r.?	-	-	Del	intronic	D	36121324	36121332	1	24	436.75	-	-	7	1	-	APOL5|CCDS13920.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APOL5|CCDS13920.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	5	3	5	7	32	25	32	25	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225697	22	36549165	AT	A	600	PASS	APOL3	CCDS13924.1	r.?	-	-	Del	intronic	D	36549165	36549167	1	36	545.937	-	-	1	1	1	APOL3|CCDS13924.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APOL3|CCDS13924.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	5	6	5	25	27	25	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225724	22	36654195	TC	T	420	PASS	APOL1	CCDS13925.1	r.?	-	-	Del	intronic	D	36654195	36654204	1	18	382.156	-	-	8	1	1	APOL1|CCDS13925.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APOL1|CCDS13925.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	5	2	7	3	37	18	37	18	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225766	22	36742653	C	CT	420	PASS	MYH9	CCDS13927.1	r.?	-	-	Ins	intronic	I	36742653	36742662	1	20	377.942	-	-	8	1	1	MYH9|CCDS13927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYH9|CCDS13927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	4	5	4	31	42	31	42	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225776	22	36784800	CT	C	600	PASS	MYH9	CCDS13927.1	r.?	-	-	Del	upstream	D	36784800	36784810	1	35	545.937	-	-	9	1	1	MYH9|CCDS13927.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MYH9|CCDS13927.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	9	10	9	0	0	./.	6	4	6	5	20	37	20	37	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225959	22	37169403	CA	C	300	PASS	RABL4	CCDS13932.1	r.?	-	-	Del	intronic	D	37169403	37169413	1	6	268.152	-	-	9	1	1	RABL4|CCDS13932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABL4|CCDS13932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	0	5	4	6	29	29	29	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760225978	22	37222290	TA	T	480	PASS	-	-	-	-	-	Del	-	D	37222290	37222298	1	24	436.148	-	-	7	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	5	4	6	20	23	20	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760226248	22	37989459	A	AT	290	PASS	-	-	-	-	-	Ins	-	I	37989459	37989466	1	12	269.958	-	-	6	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	4	3	28	29	28	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760226271	22	38051634	TC	T	598	PASS	SH3BP1	CCDS13952.2	r.2363delC	c.2050delC	p.P685fs*24	Del	frameshift	D	38051634	38051640	1	36	595.714	-	-	5	1	1	SH3BP1|CCDS13952.2|r.2363delC|c.2050delC|p.P685fs*24|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SH3BP1|CCDS13952.2|r.2363delC|c.2050delC|p.P685fs*24|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	4	7	4	0	0	./.	8	3	8	3	20	10	20	10	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760226513	22	38638658	CG	C	389	PASS	TMEM184B	CCDS13969.2	r.?	-	-	Del	intronic	D	38638658	38638666	1	18	382.156	-	-	7	1	1	TMEM184B|CCDS13969.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM184B|CCDS13969.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	5	6	18	29	18	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760226612	22	38907600	GA	G	300	PASS	DDX17	ENST00000432525	r.?	-	-	Del	upstream	D	38907600	38907610	1	12	272.969	-	-	9	1	1	DDX17|ENST00000432525|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DDX17|ENST00000432525|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	4	10	4	10	0	0	./.	2	3	3	4	29	17	29	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760226737	22	39207015	CA	C	300	PASS	-	-	-	-	-	Del	-	D	39207015	39207024	1	12	271.764	-	-	8	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	2	4	18	19	18	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760227144	22	40421259	TA	T	360	PASS	FAM83F	CCDS14000.2	r.?	-	-	Del	intronic	D	40421259	40421269	1	15	326.358	-	-	9	1	1	FAM83F|CCDS14000.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM83F|CCDS14000.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	2	4	6	24	25	24	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760227207	22	40563894	C	CA	300	PASS	TNRC6B	CCDS46712.1	r.?	-	-	Ins	intronic	I	40563894	40563901	1	12	269.958	-	-	6	1	1	TNRC6B|CCDS46712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TNRC6B|CCDS46712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	3	2	6	6	29	29	29	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760227444	22	41221879	CA	C	336	PASS	FAM10A4	CCDS14006.1	r.2254delU	c.?	p.?	Del	3'UTR variant	D	41221879	41221888	1	16	326.96	-	-	8	1	1	FAM10A4|CCDS14006.1|r.2254delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FAM10A4|CCDS14006.1|r.2254delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	7	15	7	0	0	./.	3	3	4	3	23	19	23	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760227585	22	41523300	AT	A	300	PASS	MIR1281	CCDS14010.1	r.?	-	-	Del	intronic	D	41523300	41523309	1	12	272.969	-	-	8	1	1	MIR1281|CCDS14010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR1281|CCDS14010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	3	3	24	24	24	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760227638	22	41624178	GA	G	480	PASS	L3MBTL2	CCDS14011.1	r.?	-	-	Del	intronic	D	41624178	41624186	1	21	436.75	-	-	7	1	1	L3MBTL2|CCDS14011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	L3MBTL2|CCDS14011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	2	6	2	7	21	30	21	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760227693	22	41756653	CG	C	300	PASS	ZC3H7B	CCDS14013.1	r.?	-	-	Del	downstream	D	41756653	41756661	1	10	271.764	-	-	7	1	1	ZC3H7B|CCDS14013.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZC3H7B|CCDS14013.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	14	5	14	0	0	./.	4	1	6	2	23	16	23	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228049	22	42584993	TAAAG	T	298	PASS	TCF20	CCDS14033.1	r.?	-	-	Del	intronic	D	42584993	42584999	4	15	327.562	-	-	1	1	1	TCF20|CCDS14033.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF20|CCDS14033.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	4	3	26	16	26	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228402	22	43332055	TA	T	505	PASS	PACSIN2	CCDS43023.1	r.?	-	-	Del	intronic	D	43332055	43332064	1	32	545.937	-	-	8	1	1	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	7	3	7	6	31	36	31	36	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228528	22	43553869	AT	A	420	PASS	TSPO	CCDS33661.1	r.?	-	-	Del	intronic	D	43553869	43553876	1	20	380.35	-	-	6	1	1	TSPO|CCDS33661.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSPO|CCDS33661.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	5	16	5	0	0	./.	3	4	4	5	33	22	33	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228599	22	43776122	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	43776122	43776131	1	12	263.938	-	-	8	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	3	2	27	26	27	26	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228840	22	44469373	CA	C	480	PASS	PARVB	CCDS14056.1	r.?	-	-	Del	intronic	D	44469373	44469382	1	25	434.943	-	-	8	1	1	PARVB|CCDS14056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARVB|CCDS14056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	4	4	8	16	28	16	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228847	22	44504813	GA	G	360	PASS	PARVB	CCDS14056.1	r.?	-	-	Del	intronic	D	44504813	44504822	1	20	373.125	-	-	8	1	1	PARVB|CCDS14056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARVB|CCDS14056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	7	5	33	17	33	17	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228849	22	44507500	A	AT	269	PASS	PARVB	CCDS14056.1	r.?	-	-	Ins	intronic	I	44507500	44507509	1	10	269.958	-	-	8	1	1	PARVB|CCDS14056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARVB|CCDS14056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	1	4	3	5	32	20	32	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760228934	22	44704491	TC	T	300	PASS	KIAA1644	CCDS43025.1	r.?	-	-	Del	intronic	D	44704491	44704497	1	12	272.366	-	-	5	1	1	KIAA1644|CCDS43025.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1644|CCDS43025.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	2	4	24	29	24	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229040	22	45033904	AT	A	300	PASS	-	-	-	-	-	Del	-	D	45033904	45033914	1	6	271.764	-	-	9	1	1	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	0	5	0	5	0	28	0	28	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229266	22	45534295	GA	G	360	PASS	-	-	-	-	-	Del	-	D	45534295	45534304	1	15	327.562	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	4	4	29	16	29	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229366	22	45716261	C	CA	360	PASS	FAM118A	CCDS14065.1	r.?	-	-	Ins	intronic	I	45716261	45716271	1	15	320.338	-	-	9	1	1	FAM118A|CCDS14065.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM118A|CCDS14065.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	2	4	6	6	31	38	32	38	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229413	22	45800281	G	GA	480	PASS	SMC1B	CCDS43027.1	r.?	-	-	Ins	intronic	I	45800281	45800289	1	21	431.933	-	-	7	1	1	SMC1B|CCDS43027.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMC1B|CCDS43027.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	6	2	6	2	30	20	30	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229488	22	46023183	CA	C	480	PASS	-	-	-	-	-	Del	-	D	46023183	46023193	1	24	436.75	-	-	9	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	3	5	4	7	25	21	25	21	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229492	22	46031232	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	46031232	46031242	1	10	269.958	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	4	1	5	2	33	33	33	33	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229578	22	46344470	TC	T	420	PASS	WNT7B	CCDS33667.1	r.?	-	-	Del	intronic	D	46344470	46344479	1	14	380.952	-	-	8	1	1	WNT7B|CCDS33667.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WNT7B|CCDS33667.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	1	6	2	8	13	27	13	27	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229612	22	46431285	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	46431285	46431292	1	40	593.908	-	-	6	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	7	6	9	35	34	35	34	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229751	22	46826524	AC	A	329	PASS	CELSR1	CCDS14076.1	r.?	-	-	Del	intronic	D	46826524	46826530	1	15	323.348	-	-	5	1	1	CELSR1|CCDS14076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELSR1|CCDS14076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	4	2	5	2	33	14	33	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760229913	22	47175286	C	CT	417	PASS	TBC1D22A	CCDS14078.1	r.?	-	-	Ins	intronic	I	47175286	47175295	1	20	377.942	-	-	8	1	1	TBC1D22A|CCDS14078.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D22A|CCDS14078.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	4	7	4	31	18	31	18	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230015	22	47519189	GC	G	300	PASS	TBC1D22A	CCDS14078.1	r.?	-	-	Del	intronic	D	47519189	47519195	1	10	272.969	-	-	5	1	1	TBC1D22A|CCDS14078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D22A|CCDS14078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	6	1	34	24	34	24	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230293	22	48368878	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	48368878	48368886	1	16	323.95	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	3	4	5	43	19	45	19	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230438	22	48759269	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	48759269	48759277	1	12	268.152	-	-	7	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	3	2	4	2	33	40	34	40	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230496	22	48873705	CA	C	360	PASS	-	-	-	-	-	Del	-	D	48873705	48873713	1	12	327.562	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	5	1	5	31	25	31	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230498	22	48882111	AC	A	300	PASS	FAM19A5	CCDS46728.1	r.?	-	-	Del	upstream	D	48882111	48882118	1	12	272.969	-	-	6	1	1	FAM19A5|CCDS46728.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FAM19A5|CCDS46728.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	6	16	6	0	0	./.	3	2	4	5	28	26	28	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230514	22	48974672	GA	G	300	PASS	FAM19A5	CCDS46729.1	r.?	-	-	Del	intronic	D	48974672	48974674	1	12	267.55	-	-	1	1	1	FAM19A5|CCDS46729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM19A5|CCDS46729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	3	4	26	18	26	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230589	22	49158697	T	TA	360	PASS	FAM19A5	ENST00000336769	r.?	-	-	Ins	intronic	I	49158697	49158706	1	16	323.95	-	-	8	1	1	FAM19A5|ENST00000336769|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A5|ENST00000336769|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	3	3	4	3	24	14	24	14	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230963	22	50043836	TA	T	420	PASS	C22orf34	ENST00000380976	r.?	-	-	Del	intronic	D	50043836	50043844	1	20	381.554	-	-	7	1	1	C22orf34|ENST00000380976|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C22orf34|ENST00000380976|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	4	3	6	6	26	31	26	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760230993	22	50130389	TG	T	449	PASS	-	-	-	-	-	Del	-	D	50130389	50130397	1	16	436.75	-	-	7	1	1	-	-	./.	0	0	0	0	2	8	2	8	0	0	./.	1	7	1	7	6	34	6	34	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231014	22	50213777	CA	C	300	PASS	BRD1	CCDS14080.1	r.?	-	-	Del	intronic	D	50213777	50213786	1	12	271.162	-	-	8	1	1	BRD1|CCDS14080.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRD1|CCDS14080.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	6	3	27	25	27	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231030	22	50246153	AT	A	360	PASS	ZBED4	CCDS33677.1	r.?	-	-	Del	upstream	D	50246153	50246163	1	12	326.96	-	-	9	1	1	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	3	13	3	0	0	./.	1	5	4	5	28	18	28	18	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231034	22	50257352	CTCT	C	329	PASS	ZBED4	CCDS33677.1	r.?	-	-	Del	intronic	D	50257352	50257360	3	15	327.562	-	-	2	1	1	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	2	5	2	27	21	27	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231150	22	50656548	TG	T	480	PASS	TUBGCP6	CCDS14087.1	r.5274-3delc	c.5169-3delc	p.?	Del	splice region	D	50656548	50656555	1	25	436.148	-	-	6	1	1	TUBGCP6|CCDS14087.1|r.5274-3delc|c.5169-3delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	TUBGCP6|CCDS14087.1|r.5274-3delc|c.5169-3delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	5	5	33	35	33	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231215	22	50805485	TA	T	540	PASS	SAPS2	CCDS33681.1	r.?	-	-	Del	intronic	D	50805485	50805492	1	30	490.139	-	-	6	1	1	SAPS2|CCDS33681.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SAPS2|CCDS33681.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	4	6	4	31	21	31	21	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231247	22	50849883	CA	C	300	PASS	SAPS2	CCDS33681.1	r.?	-	-	Del	intronic	D	50849883	50849893	1	12	272.366	-	-	9	1	1	SAPS2|CCDS33681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAPS2|CCDS33681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	2	3	3	5	23	24	23	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231370	22	51217969	TG	T	255	PASS	RABL2B	CCDS33683.1	r.?	-	-	Del	intronic	D	51217969	51217978	1	10	272.969	-	-	8	1	1	RABL2B|CCDS33683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABL2B|CCDS33683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	3	5	27	24	27	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231542	3	673987	GA	G	420	PASS	-	-	-	-	-	Del	-	D	673987	673996	1	20	377.361	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	3	5	16	18	16	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231620	3	1006694	GA	G	420	PASS	-	-	-	-	-	Del	-	D	1006694	1006703	1	14	377.963	-	-	8	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	1	6	1	7	24	33	24	33	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760231693	3	1260464	CA	C	300	PASS	CNTN6	CCDS2557.1	r.?	-	-	Del	intronic	D	1260464	1260474	1	12	269.973	-	-	9	1	1	CNTN6|CCDS2557.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN6|CCDS2557.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	5	2	17	17	17	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232069	3	2262593	G	GA	420	PASS	CNTN4	CCDS43041.1	r.?	-	-	Ins	intronic	I	2262593	2262600	1	20	373.748	-	-	6	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	4	4	16	21	16	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232214	3	2686670	GA	G	300	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2686670	2686679	1	12	269.973	-	-	8	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	3	3	20	20	20	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232221	3	2703580	GT	G	420	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2703580	2703587	1	18	377.963	-	-	6	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	5	2	6	2	18	15	18	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232295	3	2846421	CT	C	329	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2846421	2846431	1	12	323.968	-	-	9	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	10	27	10	0	0	./.	1	5	1	7	23	24	23	24	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232322	3	2945429	CT	C	420	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2945429	2945438	1	20	377.963	-	-	8	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	3	4	3	14	17	14	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232583	3	3768800	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	3768800	3768805	1	15	320.356	-	-	4	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	2	6	22	24	23	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232888	3	4711839	G	GT	420	PASS	ITPR1	CCDS46740.1	r.?	-	-	Ins	intronic	I	4711839	4711842	1	20	373.748	-	-	2	1	1	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	7	0	0	./.	3	4	5	5	26	23	26	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760232898	3	4734808	C	CA	420	PASS	ITPR1	CCDS46740.1	r.?	-	-	Ins	intronic	I	4734808	4734817	1	20	370.136	-	-	8	1	1	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	3	5	4	19	21	19	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760233211	3	5562554	AT	A	360	PASS	-	-	-	-	-	Del	-	D	5562554	5562563	1	15	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	6	2	31	18	31	18	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760233498	3	6575088	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	6575088	6575096	1	24	427.141	-	-	7	1	1	-	-	./.	0	0	0	0	15	23	16	23	0	0	./.	3	5	3	6	27	24	27	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760233641	3	7278065	AT	A	360	PASS	GRM7	CCDS43042.1	r.?	-	-	Del	intronic	D	7278065	7278072	1	15	323.968	-	-	6	1	1	GRM7|CCDS43042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM7|CCDS43042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	4	2	5	3	15	22	15	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760233811	3	7902635	CT	C	300	PASS	-	-	-	-	-	Del	-	D	7902635	7902644	1	12	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	4	6	17	25	17	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760234088	3	8848857	CT	C	360	PASS	RAD18	ENST00000427329	r.?	-	-	Del	intronic	D	8848857	8848865	1	15	323.968	-	-	7	1	1	RAD18|ENST00000427329|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAD18|ENST00000427329|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	5	2	19	15	19	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760234190	3	9274308	CA	C	420	PASS	SRGAP3	CCDS33689.1	r.?	-	-	Del	intronic	D	9274308	9274317	1	20	377.963	-	-	8	1	1	SRGAP3|CCDS33689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRGAP3|CCDS33689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	7	3	20	10	20	10	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760234643	3	11025761	TA	T	420	PASS	-	-	-	-	-	Del	-	D	11025761	11025764	1	20	377.361	-	-	2	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	9	4	24	12	24	12	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760234703	3	11275761	AT	A	449	PASS	HRH1	CCDS2604.1	r.?	-	-	Del	intronic	D	11275761	11275770	1	16	428.947	-	-	8	1	1	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	1	7	2	10	28	32	28	32	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760235399	3	13304230	TA	T	300	PASS	-	-	-	-	-	Del	-	D	13304230	13304236	1	12	269.973	-	-	5	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	3	4	20	20	20	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760235472	3	13574919	CT	C	360	PASS	-	-	-	-	-	Del	-	D	13574919	13574927	1	16	322.162	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	5	6	26	23	26	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760235494	3	13644204	TG	T	480	PASS	FBLN2	CCDS46761.1	r.?	-	-	Del	intronic	D	13644204	13644210	1	25	431.957	-	-	5	1	1	FBLN2|CCDS46761.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBLN2|CCDS46761.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	4	5	4	15	24	15	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760235830	3	14925958	CCTT	C	267	PASS	FGD5	CCDS46767.1	r.?	-	-	Del	intronic	D	14925958	14925965	3	15	322.764	-	-	2	1	1	FGD5|CCDS46767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGD5|CCDS46767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	17	4	17	0	0	./.	4	2	4	3	20	22	20	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760236213	3	16372368	ATCT	A	389	PASS	RFTN1	CCDS33712.1	r.?	-	-	Del	intronic	D	16372368	16372375	3	20	376.758	-	-	2	1	1	RFTN1|CCDS33712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFTN1|CCDS33712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	5	5	25	24	25	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760236379	3	16880102	CTT	C	629	PASS	-	-	-	-	-	Del	-	D	16880102	16880106	2	42	593.941	-	-	3	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	6	5	6	6	30	24	30	24	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760236539	3	17757295	TA	T	360	PASS	TBC1D5	CCDS33714.1	r.?	-	-	Del	intronic	D	17757295	17757304	1	15	319.151	-	-	8	1	1	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	4	4	5	24	18	24	18	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760236664	3	18458583	TGAA	T	480	PASS	SATB1	CCDS2631.1	r.?	-	-	Del	intronic	D	18458583	18458595	3	25	431.957	-	-	3	1	1	SATB1|CCDS2631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SATB1|CCDS2631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	4	4	5	4	18	20	18	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760236965	3	20070136	TAG	T	420	PASS	-	-	-	-	-	Del	-	D	20070136	20070145	2	20	377.963	-	-	4	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	4	3	4	27	8	27	8	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760236995	3	20169988	GT	G	420	PASS	KAT2B	CCDS2634.1	r.?	-	-	Del	intronic	D	20169988	20169998	1	18	377.963	-	-	9	1	-	KAT2B|CCDS2634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KAT2B|CCDS2634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	6	20	6	0	0	./.	2	5	5	6	24	29	24	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237029	3	20330726	CT	C	300	PASS	-	-	-	-	-	Del	-	D	20330726	20330734	1	6	269.371	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	5	0	6	1	16	1	16	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237070	3	20489411	TA	T	360	PASS	-	-	-	-	-	Del	-	D	20489411	20489420	1	12	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	1	6	2	25	12	25	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237407	3	21782806	C	CT	300	PASS	ZNF385D	CCDS2636.1	r.?	-	-	Ins	intronic	I	21782806	21782811	1	10	266.963	-	-	4	1	1	ZNF385D|CCDS2636.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF385D|CCDS2636.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	1	6	12	22	12	22	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237657	3	22735289	TA	T	300	PASS	-	-	-	-	-	Del	-	D	22735289	22735299	1	6	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	0	6	0	22	4	22	4	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237764	3	23233373	GA	G	420	PASS	-	-	-	-	-	Del	-	D	23233373	23233383	1	14	377.963	-	-	9	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	1	6	1	9	14	31	14	31	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237914	3	23770722	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	23770722	23770731	1	10	266.361	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	5	2	23	13	23	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760237974	3	23968004	CT	C	720	PASS	NKIRAS1	CCDS33717.1	r.?	-	-	Del	intronic	D	23968004	23968014	1	49	647.334	-	-	9	1	1	NKIRAS1|CCDS33717.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NKIRAS1|CCDS33717.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	6	6	8	6	19	27	19	27	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238013	3	24108862	A	ATG	300	PASS	-	-	-	-	-	Ins	-	I	24108862	24108876	2	10	263.953	-	-	6	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	1	4	3	4	22	18	23	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238317	3	25444114	TA	T	540	PASS	RARB	ENST00000404969	r.?	-	-	Del	intronic	D	25444114	25444121	1	30	485.952	-	-	6	1	1	RARB|ENST00000404969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARB|ENST00000404969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	5	5	5	25	17	25	17	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238447	3	25899680	C	CT	480	PASS	ENSG00000230891	ENST00000451284	r.?	-	-	Ins	downstream	I	25899680	25899685	1	21	427.141	-	-	4	1	1	ENSG00000230891|ENST00000451284|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	ENSG00000230891|ENST00000451284|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	11	12	11	13	0	0	./.	2	6	3	6	16	21	16	21	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238486	3	26013494	CT	C	540	PASS	-	-	-	-	-	Del	-	D	26013494	26013501	1	28	485.952	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	6	3	6	23	24	23	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238702	3	27029320	CCTT	C	420	PASS	-	-	-	-	-	Del	-	D	27029320	27029326	3	14	377.963	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	1	7	1	27	12	27	12	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238753	3	27171791	TCTC	T	360	PASS	NEK10	ENST00000396636	r.?	-	-	Del	intronic	D	27171791	27171797	3	15	323.968	-	-	1	1	1	NEK10|ENST00000396636|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK10|ENST00000396636|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	4	2	4	2	11	16	11	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760238977	3	28093926	ATG	A	600	PASS	-	-	-	-	-	Del	-	D	28093926	28093937	2	27	539.947	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	8	2	10	2	23	18	23	18	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239080	3	28662261	TA	T	358	PASS	-	-	-	-	-	Del	-	D	28662261	28662269	1	18	377.963	-	-	7	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	2	6	3	15	20	15	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239113	3	28758373	TA	T	569	PASS	-	-	-	-	-	Del	-	D	28758373	28758382	1	35	538.14	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	6	4	8	6	26	27	26	27	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239157	3	28891817	TA	T	300	PASS	-	-	-	-	-	Del	-	D	28891817	28891826	1	12	268.769	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	4	2	21	5	21	5	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239276	3	29375999	AT	A	360	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29375999	29376009	1	15	323.968	-	-	9	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	5	3	18	6	18	6	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239335	3	29557926	GT	G	360	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29557926	29557936	1	12	323.968	-	-	9	1	-	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	1	5	1	6	18	26	18	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239359	3	29660153	GA	G	300	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29660153	29660163	1	12	269.973	-	-	9	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	20	7	20	0	0	./.	3	2	4	6	25	22	25	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239732	3	31154283	TA	T	300	PASS	-	-	-	-	-	Del	-	D	31154283	31154292	1	12	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	2	5	6	25	6	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760239843	3	31602034	AT	A	360	PASS	STT3B	CCDS2650.1	r.?	-	-	Del	intronic	D	31602034	31602044	1	12	323.366	-	-	9	1	1	STT3B|CCDS2650.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STT3B|CCDS2650.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	5	1	7	3	19	21	19	21	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240074	3	32406444	CT	C	420	PASS	CMTM8	CCDS2652.1	r.?	-	-	Del	intronic	D	32406444	32406453	1	18	371.942	-	-	8	1	1	CMTM8|CCDS2652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CMTM8|CCDS2652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	2	5	2	8	15	32	15	32	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240130	3	32667403	TC	T	349	PASS	-	-	-	-	-	Del	-	D	32667403	32667410	1	12	322.764	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	1	6	1	21	12	21	12	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240134	3	32714452	TA	T	478	PASS	-	-	-	-	-	Del	-	D	32714452	32714462	1	30	485.952	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	5	5	6	17	20	17	20	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240245	3	32997251	GC	G	298	PASS	CCR4	CCDS2656.1	r.2506delC	c.?	p.?	Del	3'UTR variant	D	32997251	32997257	1	16	323.968	-	-	5	1	1	CCR4|CCDS2656.1|r.2506delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CCR4|CCDS2656.1|r.2506delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	3	3	8	3	8	3	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240483	3	34018464	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	34018464	34018472	1	10	266.963	-	-	7	1	1	-	-	./.	0	0	0	0	10	7	11	7	0	0	./.	4	1	5	2	22	26	23	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240499	3	34086076	AG	A	480	PASS	-	-	-	-	-	Del	-	D	34086076	34086083	1	24	430.753	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	6	4	26	22	26	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240575	3	34461860	TG	T	360	PASS	-	-	-	-	-	Del	-	D	34461860	34461866	1	16	322.162	-	-	5	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	3	3	4	3	22	17	22	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240739	3	35111610	TA	T	300	PASS	-	-	-	-	-	Del	-	D	35111610	35111616	1	12	269.973	-	-	5	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	2	3	3	4	19	16	19	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760240774	3	35241146	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	35241146	35241153	1	18	372.544	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	5	3	6	22	24	22	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241060	3	36737666	CT	C	420	PASS	-	-	-	-	-	Del	-	D	36737666	36737674	1	20	377.963	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	4	6	7	22	17	22	17	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241310	3	37567509	A	AT	360	PASS	ITGA9	CCDS2669.1	r.1584-8_1584-7insu	c.1328-8_1328-7insT	p.?	Ins	splice region	I	37567509	37567514	1	15	319.754	-	-	4	1	1	ITGA9|CCDS2669.1|r.1584-8_1584-7insu|c.1328-8_1328-7insT|p.?|protein_coding:CDS:extended_intronic_splice_region:insertion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000667:SO:CGPX04:SO:0001576	ITGA9|CCDS2669.1|r.1584-8_1584-7insu|c.1328-8_1328-7insT|p.?|protein_coding:CDS:extended_intronic_splice_region:insertion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000667:SO:CGPX04:SO:0001576	./.	0	0	0	0	9	14	10	14	0	0	./.	2	4	2	4	17	20	17	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241375	3	37865455	GT	G	389	PASS	ITGA9	CCDS2669.1	r.?	-	-	Del	downstream	D	37865455	37865465	1	18	376.758	-	-	9	1	1	ITGA9|CCDS2669.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ITGA9|CCDS2669.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	16	10	16	10	0	0	./.	5	2	7	2	17	17	17	17	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241383	3	37934265	TG	T	300	PASS	CTDSPL	CCDS33735.1	r.?	-	-	Del	intronic	D	37934265	37934273	1	12	269.973	-	-	7	1	1	CTDSPL|CCDS33735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTDSPL|CCDS33735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	11	2	11	0	0	./.	2	3	2	4	14	22	14	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241528	3	38666341	AT	A	360	PASS	SCN5A	CCDS46796.1	r.?	-	-	Del	intronic	D	38666341	38666351	1	12	323.968	-	-	9	1	1	SCN5A|CCDS46796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN5A|CCDS46796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	5	1	6	3	32	18	32	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241554	3	38894243	GA	G	300	PASS	SCN11A	CCDS33737.1	r.?	-	-	Del	intronic	D	38894243	38894252	1	12	269.973	-	-	8	1	1	SCN11A|CCDS33737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN11A|CCDS33737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	2	3	2	20	14	20	14	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241863	3	40048359	AT	A	509	PASS	MYRIP	CCDS2689.1	r.?	-	-	Del	intronic	D	40048359	40048368	1	30	485.952	-	-	8	1	1	MYRIP|CCDS2689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYRIP|CCDS2689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	5	4	6	4	22	28	22	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241953	3	40461902	A	AT	254	PASS	ENTPD3	CCDS2691.1	r.?	-	-	Ins	intronic	I	40461902	40461912	1	10	264.555	-	-	9	1	1	ENTPD3|CCDS2691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENTPD3|CCDS2691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	10	0	0	./.	4	1	4	2	22	11	22	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760241984	3	40512805	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	40512805	40512821	2	10	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	5	1	19	9	19	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760242172	3	41333487	A	AT	300	PASS	ULK4	CCDS43071.1	r.?	-	-	Ins	intronic	I	41333487	41333497	1	12	266.963	-	-	9	1	1	ULK4|CCDS43071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ULK4|CCDS43071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	3	6	13	25	13	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760242277	3	41693791	TA	T	420	PASS	ULK4	CCDS43071.1	r.?	-	-	Del	intronic	D	41693791	41693801	1	18	375.554	-	-	9	1	1	ULK4|CCDS43071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ULK4|CCDS43071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	4	8	25	24	25	24	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760242479	3	42122375	CT	C	600	PASS	-	-	-	-	-	Del	-	D	42122375	42122385	1	35	539.947	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	4	8	4	26	20	26	20	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760242580	3	42433535	AT	A	300	PASS	-	-	-	-	-	Del	-	D	42433535	42433545	1	12	268.769	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	3	3	27	25	27	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760242640	3	42651503	CT	C	300	PASS	NKTR	CCDS2702.1	r.?	-	-	Del	intronic	D	42651503	42651513	1	12	269.973	-	-	9	1	1	NKTR|CCDS2702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKTR|CCDS2702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	2	3	2	6	18	29	18	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760242809	3	43350643	G	GT	480	PASS	SNRK	CCDS43075.1	r.?	-	-	Ins	intronic	I	43350643	43350653	1	25	422.926	-	-	9	1	1	SNRK|CCDS43075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNRK|CCDS43075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	4	4	7	33	31	33	31	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760243002	3	44224719	GA	G	480	PASS	-	-	-	-	-	Del	-	D	44224719	44224729	1	25	430.753	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	4	5	5	22	19	22	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760243125	3	44574037	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	44574037	44574045	1	10	266.361	-	-	7	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	1	4	3	4	21	22	21	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760243230	3	45029054	TA	T	300	PASS	EXOSC7	CCDS2725.1	r.?	-	-	Del	intronic	D	45029054	45029064	1	12	269.973	-	-	9	1	1	EXOSC7|CCDS2725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOSC7|CCDS2725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	3	13	3	0	0	./.	3	2	5	4	23	30	23	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760243551	3	45917303	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	45917303	45917311	1	21	424.733	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	6	4	7	21	29	21	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760243754	3	46717867	AG	A	360	PASS	ALS2CL	CCDS2743.1	r.2137delC	c.2053delC	p.L685fs*8	Del	frameshift	D	46717867	46717873	1	16	323.968	-	-	5	1	1	ALS2CL|CCDS2743.1|r.2137delC|c.2053delC|p.L685fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ALS2CL|CCDS2743.1|r.2137delC|c.2053delC|p.L685fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	5	11	5	0	0	./.	3	3	3	3	24	22	24	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760243902	3	47216305	GT	G	300	PASS	-	-	-	-	-	Del	-	D	47216305	47216315	1	12	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	2	4	2	18	20	18	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244386	3	48778880	AAAAG	A	298	PASS	AC121252.2	ENST00000501573	r.?	-	-	Del	intronic	D	48778880	48778886	4	15	323.968	-	-	1	1	1	AC121252.2|ENST00000501573|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC121252.2|ENST00000501573|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	4	2	4	2	20	22	20	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244447	3	48969035	AT	A	420	PASS	ARIH2	CCDS2780.1	r.?	-	-	Del	intronic	D	48969035	48969045	1	20	377.963	-	-	9	1	1	ARIH2|CCDS2780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARIH2|CCDS2780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	3	5	18	26	18	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244455	3	48987739	CT	C	360	PASS	ARIH2	CCDS2780.1	r.?	-	-	Del	intronic	D	48987739	48987747	1	15	323.366	-	-	7	1	1	ARIH2|CCDS2780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARIH2|CCDS2780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	4	2	4	3	18	19	18	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244538	3	49289042	C	CT	269	PASS	CCDC36	CCDS33755.2	r.?	-	-	Ins	intronic	I	49289042	49289052	1	10	266.963	-	-	9	1	1	CCDC36|CCDS33755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC36|CCDS33755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	1	4	25	22	25	22	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244545	3	49306203	CT	C	420	PASS	C3orf62	CCDS2792.1	r.?	-	-	Del	downstream	D	49306203	49306213	1	18	377.963	-	-	9	1	1	C3orf62|CCDS2792.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C3orf62|CCDS2792.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	12	6	12	6	0	0	./.	2	5	6	6	21	31	21	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244582	3	49399721	TA	T	389	PASS	RHOA	CCDS2795.1	r.?	-	-	Del	intronic	D	49399721	49399729	1	20	367.126	-	-	7	1	1	RHOA|CCDS2795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RHOA|CCDS2795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	3	4	5	5	19	14	19	14	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244811	3	50021561	CA	C	360	PASS	RBM6	CCDS2809.1	r.?	-	-	Del	intronic	D	50021561	50021570	1	16	323.968	-	-	8	1	1	RBM6|CCDS2809.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM6|CCDS2809.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	3	6	3	19	14	19	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244890	3	50190440	G	GCA	269	PASS	SEMA3F	CCDS2811.1	r.?	-	-	Ins	upstream	I	50190440	50190455	2	12	262.749	-	-	7	1	1	SEMA3F|CCDS2811.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SEMA3F|CCDS2811.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	3	2	26	11	26	11	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244902	3	50303458	CG	C	420	PASS	U73166.1	ENST00000507563	r.?	-	-	Del	intronic	D	50303458	50303466	1	18	377.963	-	-	7	1	1	U73166.1|ENST00000507563|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	U73166.1|ENST00000507563|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	2	5	3	5	22	25	22	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760244933	3	50544073	C	CT	480	PASS	CACNA2D2	CCDS33763.1	r.?	-	-	Ins	upstream	I	50544073	50544082	1	25	427.141	-	-	8	1	1	CACNA2D2|CCDS33763.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CACNA2D2|CCDS33763.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	9	8	9	0	0	./.	4	4	4	5	23	23	23	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245065	3	51029198	CA	C	329	PASS	DOCK3	CCDS46835.1	r.?	-	-	Del	intronic	D	51029198	51029208	1	15	323.968	-	-	9	1	1	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	2	5	2	34	8	34	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245274	3	51828518	CT	C	360	PASS	-	-	-	-	-	Del	-	D	51828518	51828528	1	15	320.958	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	4	3	5	19	14	19	14	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245392	3	52367783	G	GT	389	PASS	DNAH1	CCDS46842.1	r.?	-	-	Ins	intronic	I	52367783	52367793	1	14	372.544	-	-	9	1	1	DNAH1|CCDS46842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH1|CCDS46842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	6	1	6	3	32	32	32	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245416	3	52510314	CAT	C	300	PASS	NISCH	CCDS33767.1	r.?	-	-	Del	intronic	D	52510314	52510318	2	12	269.973	-	-	1	1	1	NISCH|CCDS33767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NISCH|CCDS33767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	3	3	23	25	23	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245420	3	52581925	TAA	T	420	PASS	PBRM1	CCDS2859.1	r.4964_4965delUU	c.?	p.?	Del	3'UTR variant	D	52581925	52581930	2	8	377.963	-	-	4	1	1	PBRM1|CCDS2859.1|r.4964_4965delUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PBRM1|CCDS2859.1|r.4964_4965delUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	9	10	9	0	0	./.	7	0	9	0	21	2	21	2	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245423	3	52597339	AG	A	300	PASS	PBRM1	CCDS2859.1	r.3952delC	c.3949delC	p.L1317fs*35	Del	frameshift	D	52597339	52597346	1	6	269.973	-	-	6	1	1	PBRM1|CCDS2859.1|r.3952delC|c.3949delC|p.L1317fs*35|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PBRM1|CCDS2859.1|r.3952delC|c.3949delC|p.L1317fs*35|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	7	6	7	0	0	./.	5	0	6	0	18	3	18	3	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245817	3	53954106	AT	A	300	PASS	-	-	-	-	-	Del	-	D	53954106	53954116	1	12	266.963	-	-	9	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	2	3	2	5	21	17	21	17	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760245934	3	54404784	GT	G	420	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Del	intronic	D	54404784	54404794	1	20	377.963	-	-	9	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	4	3	6	4	30	14	30	14	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760246045	3	54781170	AT	A	360	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Del	intronic	D	54781170	54781177	1	16	323.968	-	-	6	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	3	3	19	19	19	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760246111	3	55049228	A	AT	300	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Ins	intronic	I	55049228	55049237	1	6	266.963	-	-	8	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	0	5	0	6	3	24	3	24	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760246215	3	55413427	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	55413427	55413436	1	16	317.947	-	-	8	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	3	3	5	4	24	18	24	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760246561	3	56699198	GA	G	480	PASS	C3orf63	CCDS46853.1	r.?	-	-	Del	intronic	D	56699198	56699208	1	24	431.957	-	-	9	1	1	C3orf63|CCDS46853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf63|CCDS46853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	5	3	6	4	28	17	28	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760247351	3	58931184	TA	T	360	PASS	C3orf67	CCDS33776.1	r.?	-	-	Del	intronic	D	58931184	58931193	1	16	323.968	-	-	8	1	1	C3orf67|CCDS33776.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C3orf67|CCDS33776.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	3	3	4	3	23	13	23	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760247409	3	59270454	TA	T	660	PASS	-	-	-	-	-	Del	-	D	59270454	59270461	1	40	593.339	-	-	6	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	7	4	8	6	22	29	22	29	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760247481	3	59626697	GT	G	480	PASS	-	-	-	-	-	Del	-	D	59626697	59626706	1	21	431.957	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	6	2	8	23	26	23	26	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760247501	3	59687453	TA	T	420	PASS	-	-	-	-	-	Del	-	D	59687453	59687456	1	20	366.523	-	-	2	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	4	3	4	4	22	23	22	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760247601	3	60037561	GA	G	420	PASS	FHIT	CCDS2894.1	r.?	-	-	Del	intronic	D	60037561	60037569	1	18	377.963	-	-	7	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	2	6	3	22	17	22	17	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760247960	3	61151504	GA	G	360	PASS	FHIT	CCDS2894.1	r.?	-	-	Del	intronic	D	61151504	61151514	1	15	323.968	-	-	9	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	4	4	24	31	24	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248063	3	61523364	AG	A	540	PASS	-	-	-	-	-	Del	-	D	61523364	61523372	1	28	485.952	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	3	8	5	25	21	25	21	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248227	3	61984730	CT	C	300	PASS	PTPRG	CCDS2895.1	r.?	-	-	Del	intronic	D	61984730	61984740	1	12	269.973	-	-	9	1	1	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	2	7	16	21	16	21	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248460	3	62870121	CA	C	300	PASS	-	-	-	-	-	Del	-	D	62870121	62870129	1	10	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	5	2	18	17	18	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248624	3	63425879	GA	G	480	PASS	SYNPR	CCDS46859.1	r.?	-	-	Del	intronic	D	63425879	63425884	1	21	431.355	-	-	4	1	1	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	6	2	7	4	18	27	18	27	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248685	3	63817032	AG	A	300	PASS	THOC7	CCDS2900.1	r.?	-	-	Del	downstream	D	63817032	63817039	1	12	269.973	-	-	6	1	1	THOC7|CCDS2900.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C3orf49|ENST00000295896|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	3	2	28	19	28	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248723	3	63983382	AT	A	420	PASS	ATXN7	CCDS46861.1	r.?	-	-	Del	intronic	D	63983382	63983391	1	18	377.963	-	-	8	1	1	ATXN7|CCDS46861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN7|CCDS46861.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	2	7	2	25	27	25	27	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248804	3	64445819	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	64445819	64445826	1	20	373.748	-	-	6	1	-	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	4	3	7	4	21	20	21	20	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760248998	3	65138014	CA	C	360	PASS	-	-	-	-	-	Del	-	D	65138014	65138022	1	12	323.968	-	-	7	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	1	5	1	5	13	22	13	22	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249035	3	65288989	AT	A	360	PASS	-	-	-	-	-	Del	-	D	65288989	65288996	1	15	323.968	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	5	4	16	23	16	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249162	3	65715971	TA	T	420	PASS	MAGI1	CCDS33781.1	r.?	-	-	Del	intronic	D	65715971	65715981	1	20	377.963	-	-	9	1	1	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	3	5	5	22	24	22	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249365	3	66349624	CT	C	360	PASS	SLC25A26	ENST00000354883	r.?	-	-	Del	intronic	D	66349624	66349634	1	7	323.366	-	-	9	1	1	SLC25A26|ENST00000354883|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A26|ENST00000354883|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	0	6	1	8	12	26	12	26	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249447	3	66723367	GA	G	300	PASS	-	-	-	-	-	Del	-	D	66723367	66723377	1	12	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	2	4	3	23	3	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249459	3	66756541	CA	C	269	PASS	-	-	-	-	-	Del	-	D	66756541	66756551	1	10	268.769	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	3	6	24	23	24	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249472	3	66808728	TA	T	540	PASS	-	-	-	-	-	Del	-	D	66808728	66808737	1	28	485.952	-	-	8	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	6	3	6	5	32	27	32	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249716	3	67663814	AT	A	300	PASS	SUCLG2	CCDS43104.1	r.?	-	-	Del	intronic	D	67663814	67663823	1	10	269.973	-	-	8	1	1	SUCLG2|CCDS43104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUCLG2|CCDS43104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	1	6	1	16	7	16	7	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249800	3	67993105	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	67993105	67993115	1	18	371.942	-	-	9	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	5	2	7	3	22	20	22	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760249838	3	68175475	G	GA	720	PASS	FAM19A1	ENST00000478136	r.?	-	-	Ins	intronic	I	68175475	68175478	1	48	640.711	-	-	2	1	1	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	7	5	10	6	32	25	33	25	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250230	3	69534132	GC	G	360	PASS	FRMD4B	ENST00000459638	r.?	-	-	Del	intronic	D	69534132	69534140	1	15	321.56	-	-	7	1	1	FRMD4B|ENST00000459638|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FRMD4B|ENST00000459638|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	2	4	2	5	27	15	27	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250323	3	70055365	AAT	A	420	PASS	-	-	-	-	-	Del	-	D	70055365	70055370	2	18	376.758	-	-	2	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	5	2	6	16	16	16	16	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250480	3	70824658	T	TCA	420	PASS	-	-	-	-	-	Ins	-	I	70824658	70824673	2	14	369.534	-	-	7	1	1	-	-	./.	0	0	0	0	21	16	21	17	0	0	./.	1	6	1	7	10	25	10	25	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250631	3	71375223	GA	G	360	PASS	FOXP1	CCDS2914.1	r.?	-	-	Del	intronic	D	71375223	71375233	1	16	323.968	-	-	9	1	1	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	3	3	3	7	28	24	28	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250667	3	71450497	AAG	A	360	PASS	FOXP1	CCDS2914.1	r.?	-	-	Del	intronic	D	71450497	71450512	2	16	323.968	-	-	7	1	1	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	3	3	3	3	25	17	25	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250772	3	71804824	TG	T	300	PASS	GPR27	CCDS2915.1	r.1625delG	c.?	p.?	Del	3'UTR variant	D	71804824	71804831	1	12	268.769	-	-	6	1	1	GPR27|CCDS2915.1|r.1625delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GPR27|CCDS2915.1|r.1625delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	9	6	9	0	0	./.	3	2	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250777	3	71812476	TA	T	300	PASS	-	-	-	-	-	Del	-	D	71812476	71812484	1	12	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	2	3	4	3	14	9	14	9	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250819	3	71954170	ATCT	A	329	PASS	-	-	-	-	-	Del	-	D	71954170	71954180	3	12	322.764	-	-	3	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	1	5	1	6	17	31	17	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760250947	3	72342458	CA	C	329	PASS	-	-	-	-	-	Del	-	D	72342458	72342465	1	12	322.162	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	1	7	1	25	6	25	6	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760251032	3	72605368	AT	A	389	PASS	-	-	-	-	-	Del	-	D	72605368	72605378	1	18	370.738	-	-	9	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	5	3	7	24	20	24	20	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760251070	3	72733227	CT	C	300	PASS	AC103560.1	ENST00000509224	r.?	-	-	Del	intronic	D	72733227	72733237	1	10	269.973	-	-	9	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	1	4	2	4	13	21	13	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760251598	3	74514756	C	CA	300	PASS	CNTN3	CCDS33790.1	r.?	-	-	Ins	intronic	I	74514756	74514764	1	10	266.963	-	-	7	1	1	CNTN3|CCDS33790.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTN3|CCDS33790.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	5	4	34	25	34	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760251653	3	74735017	AT	A	600	PASS	-	-	-	-	-	Del	-	D	74735017	74735025	1	32	539.345	-	-	7	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	7	3	9	4	27	20	27	20	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760251737	3	75063029	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	75063029	75063036	1	10	266.963	-	-	6	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	4	2	5	28	22	28	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760251819	3	75400555	AC	A	360	PASS	-	-	-	-	-	Del	-	D	75400555	75400563	1	16	323.968	-	-	7	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	3	3	4	4	24	14	24	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760252880	3	76200035	CA	C	300	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76200035	76200042	1	12	269.973	-	-	6	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	2	4	2	20	21	20	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760252968	3	76660498	AT	A	360	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76660498	76660507	1	12	323.968	-	-	8	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	9	23	9	0	0	./.	1	5	1	5	17	30	17	30	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760253367	3	78338250	GT	G	300	PASS	-	-	-	-	-	Del	-	D	78338250	78338257	1	10	269.973	-	-	6	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	6	1	28	13	28	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760253549	3	79053350	AT	A	360	PASS	ROBO1	CCDS46872.1	r.?	-	-	Del	intronic	D	79053350	79053360	1	12	322.764	-	-	9	1	1	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	1	5	2	6	22	23	22	23	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254275	3	82480519	CAA	C	540	PASS	-	-	-	-	-	Del	-	D	82480519	82480523	2	30	485.952	-	-	3	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	5	5	5	25	22	25	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254443	3	83320671	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	83320671	83320681	1	6	266.963	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	0	5	0	20	8	20	8	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254526	3	83727845	AT	A	360	PASS	-	-	-	-	-	Del	-	D	83727845	83727852	1	15	323.968	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	4	2	23	6	23	6	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254616	3	84126339	TG	T	360	PASS	-	-	-	-	-	Del	-	D	84126339	84126348	1	12	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	5	1	7	1	23	16	23	16	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254638	3	84233605	CA	C	420	PASS	-	-	-	-	-	Del	-	D	84233605	84233614	1	18	377.963	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	2	6	2	14	8	14	8	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254663	3	84336997	GA	G	300	PASS	-	-	-	-	-	Del	-	D	84336997	84337007	1	6	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	0	5	0	6	1	15	1	15	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254763	3	84679285	CT	C	300	PASS	-	-	-	-	-	Del	-	D	84679285	84679293	1	12	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	2	3	2	3	25	18	25	18	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254835	3	85017304	CT	C	300	PASS	CADM2	ENST00000383699	r.?	-	-	Del	intronic	D	85017304	85017312	1	12	269.973	-	-	7	1	1	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	2	4	20	14	20	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760254860	3	85127689	C	CA	480	PASS	CADM2	ENST00000383699	r.?	-	-	Ins	intronic	I	85127689	85127695	1	25	427.141	-	-	5	1	1	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	4	4	7	4	34	13	35	13	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255522	3	88221143	GA	G	540	PASS	-	-	-	-	-	Del	-	D	88221143	88221149	1	30	485.952	-	-	5	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	4	5	5	22	26	22	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255648	3	88591617	T	TTG	360	PASS	-	-	-	-	-	Ins	-	I	88591617	88591633	2	16	304.1	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	3	5	15	27	15	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255760	3	88987443	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	88987443	88987453	1	12	266.963	-	-	9	1	1	-	-	./.	0	0	0	0	18	20	19	20	0	0	./.	3	2	3	2	15	15	15	15	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255858	3	89370312	CT	C	780	PASS	EPHA3	CCDS2922.1	r.?	-	-	Del	intronic	D	89370312	89370321	1	56	701.931	-	-	8	1	1	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	7	6	8	8	33	28	33	28	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255860	3	89423491	AAGTC	A	327	PASS	EPHA3	CCDS2922.1	r.?	-	-	Del	intronic	D	89423491	89423499	4	14	377.963	-	-	1	1	1	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	6	1	7	2	23	8	23	8	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255983	3	90118280	G	GAC	540	PASS	-	-	-	-	-	Ins	-	I	90118280	90118300	2	28	475.115	-	-	9	1	-	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	6	3	7	5	21	23	21	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760255988	3	90132923	CT	C	360	PASS	-	-	-	-	-	Del	-	D	90132923	90132930	1	16	323.968	-	-	6	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	4	5	19	17	19	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256120	3	93907467	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	93907467	93907477	1	10	266.963	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	1	5	2	21	11	21	11	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256163	3	94060929	TA	T	567	PASS	-	-	-	-	-	Del	-	D	94060929	94060937	1	42	593.941	-	-	7	1	1	-	-	./.	0	0	0	0	9	3	9	3	0	0	./.	5	6	5	6	12	25	12	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256186	3	94122303	AT	A	360	PASS	-	-	-	-	-	Del	-	D	94122303	94122310	1	12	323.968	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	1	7	3	36	24	36	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256214	3	94212322	AT	A	540	PASS	-	-	-	-	-	Del	-	D	94212322	94212331	1	28	485.952	-	-	8	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	6	3	6	3	26	17	26	17	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256506	3	95208254	GA	G	300	PASS	-	-	-	-	-	Del	-	D	95208254	95208262	1	12	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	18	16	18	16	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256547	3	95478043	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	95478043	95478052	1	10	265.759	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	5	1	26	31	26	31	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256596	3	95888695	GT	G	300	PASS	-	-	-	-	-	Del	-	D	95888695	95888703	1	12	269.371	-	-	7	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	4	4	22	29	22	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256836	3	96821634	CT	C	300	PASS	EPHA6	CCDS46876.1	r.?	-	-	Del	intronic	D	96821634	96821644	1	6	268.167	-	-	9	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	0	5	0	20	17	20	17	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256908	3	97226971	A	AT	300	PASS	EPHA6	CCDS46876.1	r.?	-	-	Ins	intronic	I	97226971	97226981	1	10	266.963	-	-	9	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	22	14	22	0	0	./.	4	1	6	1	25	13	26	14	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760256966	3	97605050	GT	G	360	PASS	CRYBG3	CCDS43113.1	r.?	-	-	Del	intronic	D	97605050	97605058	1	12	323.968	-	-	7	1	1	CRYBG3|CCDS43113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRYBG3|CCDS43113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	5	3	5	13	24	13	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257138	3	98309002	GT	G	300	PASS	CPOX	CCDS2932.1	r.?	-	-	Del	intronic	D	98309002	98309010	1	10	269.973	-	-	7	1	-	CPOX|CCDS2932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPOX|CCDS2932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	4	1	8	3	30	19	30	19	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257150	3	98403037	CA	C	420	PASS	-	-	-	-	-	Del	-	D	98403037	98403047	1	20	377.963	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	3	4	20	17	20	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257213	3	98629745	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	98629745	98629753	1	12	266.963	-	-	7	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	2	3	2	4	27	32	27	32	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257458	3	99908162	CT	C	300	PASS	TMEM30C	ENST00000476804	r.?	-	-	Del	intronic	D	99908162	99908172	1	12	268.769	-	-	9	1	1	TMEM30C|ENST00000476804|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM30C|ENST00000476804|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	6	2	23	28	23	28	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257487	3	99976543	TA	T	480	PASS	TBC1D23	CCDS2936.1	r.?	-	-	Del	upstream	D	99976543	99976552	1	21	431.957	-	-	8	1	1	TBC1D23|CCDS2936.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TBC1D23|CCDS2936.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	11	6	11	0	0	./.	6	2	8	2	25	17	25	17	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257531	3	100108882	TA	T	360	PASS	TOMM70A	CCDS33807.1	r.?	-	-	Del	intronic	D	100108882	100108892	1	16	323.968	-	-	9	1	1	TOMM70A|CCDS33807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOMM70A|CCDS33807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	3	4	5	19	17	19	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257593	3	100346822	C	CT	300	PASS	GPR128	CCDS2938.1	r.?	-	-	Ins	intronic	I	100346822	100346829	1	10	266.963	-	-	6	1	1	GPR128|CCDS2938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR128|CCDS2938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	1	4	22	24	22	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760257621	3	100455401	CT	C	420	PASS	TFG	CCDS2939.1	r.?	-	-	Del	intronic	D	100455401	100455410	1	20	377.963	-	-	8	1	1	TFG|CCDS2939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TFG|CCDS2939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	5	5	20	19	20	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760258811	3	104924175	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	104924175	104924185	1	12	259.738	-	-	9	1	1	-	-	./.	0	0	0	0	23	7	23	7	0	0	./.	3	2	4	3	22	20	22	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760259097	3	105883800	CA	C	300	PASS	-	-	-	-	-	Del	-	D	105883800	105883808	1	12	268.769	-	-	7	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	2	3	3	3	19	22	19	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760259394	3	106903066	CT	C	360	PASS	-	-	-	-	-	Del	-	D	106903066	106903076	1	12	323.968	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	1	5	1	19	14	19	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760259756	3	108436812	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	108436812	108436822	1	24	427.141	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	3	5	5	30	22	31	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760259808	3	108595207	AG	A	300	PASS	-	-	-	-	-	Del	-	D	108595207	108595213	1	12	269.973	-	-	5	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	6	2	29	26	29	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760259870	3	108819640	CT	C	360	PASS	MORC1	CCDS2955.1	r.?	-	-	Del	intronic	D	108819640	108819650	1	7	323.968	-	-	9	1	1	MORC1|CCDS2955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MORC1|CCDS2955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	0	6	1	7	16	21	16	21	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760259929	3	108975279	CA	C	360	PASS	-	-	-	-	-	Del	-	D	108975279	108975288	1	12	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	1	5	2	15	24	15	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260066	3	109532712	GT	G	360	PASS	-	-	-	-	-	Del	-	D	109532712	109532722	1	7	322.764	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	0	6	2	6	18	32	18	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260241	3	110118286	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	110118286	110118294	1	12	320.356	-	-	7	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	5	1	7	2	25	2	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260424	3	110719782	CA	C	517	PASS	-	-	-	-	-	Del	-	D	110719782	110719791	1	28	485.952	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	6	7	6	22	30	22	30	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260461	3	110938350	AT	A	300	PASS	PVRL3	ENST00000485506	r.?	-	-	Del	intronic	D	110938350	110938357	1	12	269.973	-	-	6	1	1	PVRL3|ENST00000485506|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PVRL3|ENST00000485506|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	2	3	2	3	14	10	14	10	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260464	3	110946604	C	CA	360	PASS	PVRL3	ENST00000485506	r.?	-	-	Ins	intronic	I	110946604	110946613	1	15	320.356	-	-	8	1	1	PVRL3|ENST00000485506|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PVRL3|ENST00000485506|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	12	21	13	0	0	./.	2	4	3	6	24	23	24	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260499	3	111077184	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	111077184	111077190	1	24	427.141	-	-	5	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	5	4	7	23	14	23	14	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260726	3	111953988	CT	C	332	PASS	SLC9A10	CCDS33817.1	r.?	-	-	Del	intronic	D	111953988	111953993	1	30	485.952	-	-	4	1	1	SLC9A10|CCDS33817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A10|CCDS33817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	4	5	5	5	14	28	14	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260742	3	111989662	CA	C	660	PASS	SLC9A10	CCDS33817.1	r.?	-	-	Del	intronic	D	111989662	111989672	1	40	593.941	-	-	9	1	1	SLC9A10|CCDS33817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A10|CCDS33817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	7	4	7	4	21	22	21	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260759	3	112022329	GT	G	480	PASS	-	-	-	-	-	Del	-	D	112022329	112022334	1	24	431.957	-	-	4	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	5	3	7	4	32	27	32	27	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760260845	3	112264993	C	CA	300	PASS	ATG3	CCDS2966.1	r.?	-	-	Ins	intronic	I	112264993	112265001	1	12	265.759	-	-	7	1	1	ATG3|CCDS2966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG3|CCDS2966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	11	22	0	0	./.	2	3	3	4	15	18	16	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760261131	3	113484773	CA	C	300	PASS	ATP6V1A	CCDS2976.1	r.?	-	-	Del	intronic	D	113484773	113484783	1	12	263.351	-	-	9	1	1	ATP6V1A|CCDS2976.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATP6V1A|CCDS2976.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	9	12	0	0	./.	3	2	4	4	30	22	34	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760261290	3	113978713	CT	C	300	PASS	-	-	-	-	-	Del	-	D	113978713	113978722	1	6	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	16	1	16	1	0	0	./.	5	0	6	0	18	0	18	0	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760261414	3	114558917	TA	T	360	PASS	ZBTB20	CCDS2981.1	r.?	-	-	Del	intronic	D	114558917	114558927	1	16	323.968	-	-	9	1	1	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	3	4	4	20	16	20	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760261473	3	114995539	TA	T	480	PASS	-	-	-	-	-	Del	-	D	114995539	114995548	1	24	431.355	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	3	7	4	16	15	16	15	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760261511	3	115224561	GC	G	600	PASS	-	-	-	-	-	Del	-	D	115224561	115224568	1	35	538.14	-	-	6	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	4	6	4	6	20	24	20	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760261915	3	116792043	AT	A	360	PASS	LSAMP	ENST00000474851	r.?	-	-	Del	intronic	D	116792043	116792051	1	15	323.366	-	-	7	1	1	LSAMP|ENST00000474851|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LSAMP|ENST00000474851|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	2	4	3	5	31	23	31	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262032	3	117166367	GA	G	360	PASS	-	-	-	-	-	Del	-	D	117166367	117166376	1	16	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	7	16	20	16	20	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262104	3	117549436	GA	G	360	PASS	-	-	-	-	-	Del	-	D	117549436	117549445	1	16	323.366	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	5	4	21	14	21	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262110	3	117585610	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	117585610	117585619	2	10	269.973	-	-	4	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	1	4	1	4	13	13	13	13	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262276	3	118261497	A	AAC	480	PASS	-	-	-	-	-	Ins	-	I	118261497	118261511	2	24	422.324	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	15	0	0	./.	3	5	3	6	18	26	18	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262616	3	119665182	T	TA	300	PASS	GSK3B	CCDS2996.1	r.?	-	-	Ins	intronic	I	119665182	119665192	1	12	266.963	-	-	9	1	1	GSK3B|CCDS2996.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GSK3B|CCDS2996.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	2	3	3	26	12	26	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262736	3	120060876	TC	T	300	PASS	LRRC58	CCDS46892.1	r.?	-	-	Del	intronic	D	120060876	120060883	1	12	264.555	-	-	6	1	1	LRRC58|CCDS46892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC58|CCDS46892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	10	2	10	0	0	./.	2	3	5	6	25	31	25	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262886	3	120889232	CA	C	277	PASS	STXBP5L	CCDS43137.1	r.?	-	-	Del	intronic	D	120889232	120889240	1	12	269.973	-	-	7	1	1	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	3	3	18	21	18	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760262973	3	121244740	CT	C	300	PASS	POLQ	CCDS33833.1	r.?	-	-	Del	intronic	D	121244740	121244749	1	10	269.973	-	-	8	1	1	POLQ|CCDS33833.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLQ|CCDS33833.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	1	4	2	5	18	20	18	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760263089	3	121628492	G	GT	420	PASS	SLC15A2	CCDS3007.1	r.?	-	-	Ins	intronic	I	121628492	121628500	1	8	373.748	-	-	7	1	-	SLC15A2|CCDS3007.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC15A2|CCDS3007.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	0	7	3	9	9	27	9	28	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760263234	3	122166776	AC	A	324	PASS	KPNA1	CCDS3013.1	r.?	-	-	Del	intronic	D	122166776	122166782	1	15	323.968	-	-	5	1	1	KPNA1|CCDS3013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KPNA1|CCDS3013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	3	4	20	26	20	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760263368	3	122524719	GA	G	480	PASS	DIRC2	CCDS3018.1	r.?	-	-	Del	intronic	D	122524719	122524726	1	24	430.753	-	-	6	1	1	DIRC2|CCDS3018.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIRC2|CCDS3018.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	5	3	6	11	24	11	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760263508	3	123154450	CT	C	300	PASS	ADCY5	CCDS3022.1	r.?	-	-	Del	intronic	D	123154450	123154459	1	6	269.973	-	-	8	1	1	ADCY5|CCDS3022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY5|CCDS3022.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	0	5	0	7	1	28	1	28	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760263660	3	123861600	AC	A	300	PASS	KALRN	CCDS3027.1	r.?	-	-	Del	intronic	D	123861600	123861607	1	12	269.973	-	-	6	1	1	KALRN|CCDS3027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KALRN|CCDS3027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	5	27	23	27	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264003	3	125097145	GT	G	480	PASS	ZNF148	CCDS3031.1	r.?	-	-	Del	upstream	D	125097145	125097155	1	24	431.957	-	-	9	1	1	ZNF148|CCDS3031.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF148|CCDS3031.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	9	10	9	0	0	./.	5	3	8	3	25	19	25	19	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264312	3	125972412	AT	A	540	PASS	-	-	-	-	-	Del	-	D	125972412	125972418	1	28	483.544	-	-	5	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	6	6	8	18	34	18	34	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264405	3	126333768	TG	T	300	PASS	TXNRD3	ENST00000457556	r.?	-	-	Del	intronic	D	126333768	126333775	1	12	269.973	-	-	6	1	1	TXNRD3|ENST00000457556|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNRD3|ENST00000457556|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	3	3	17	6	17	6	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264609	3	127268417	A	AC	720	PASS	ENSG00000230883	ENST00000455379	r.?	-	-	Ins	intronic	I	127268417	127268425	1	33	640.711	-	-	7	1	1	ENSG00000230883|ENST00000455379|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000230883|ENST00000455379|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	2	10	3	11	23	29	23	29	3	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264714	3	127761859	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	127761859	127761865	1	15	320.356	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	4	6	4	25	28	25	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264861	3	128353572	AT	A	660	PASS	RPN1	CCDS3051.1	r.?	-	-	Del	intronic	D	128353572	128353580	1	42	593.339	-	-	7	1	1	RPN1|CCDS3051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPN1|CCDS3051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	6	5	8	5	17	24	17	24	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760264909	3	128445242	TC	T	329	PASS	RAB7A	CCDS3052.1	r.?	-	-	Del	intronic	D	128445242	128445251	1	15	319.151	-	-	8	1	1	RAB7A|CCDS3052.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAB7A|CCDS3052.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	4	4	6	19	18	19	18	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265023	3	128747494	T	TC	360	PASS	CCDC48	ENST00000480450	r.?	-	-	Ins	intronic	I	128747494	128747496	1	15	319.754	-	-	1	1	-	CCDC48|ENST00000480450|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC48|ENST00000480450|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	5	4	23	19	23	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265194	3	129316326	G	GC	360	PASS	PLXND1	CCDS33854.1	r.?	-	-	Ins	intronic	I	129316326	129316336	1	15	320.356	-	-	9	1	1	PLXND1|CCDS33854.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXND1|CCDS33854.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	4	2	5	4	30	24	30	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265208	3	129406142	G	GA	360	PASS	TMCC1	CCDS33855.1	r.?	-	-	Ins	intronic	I	129406142	129406151	1	15	320.356	-	-	8	1	1	TMCC1|CCDS33855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMCC1|CCDS33855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	4	2	6	2	27	19	27	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265482	3	130268403	GT	G	360	PASS	-	-	-	-	-	Del	-	D	130268403	130268413	1	15	323.366	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	4	3	4	29	21	29	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265492	3	130300812	CT	C	569	PASS	COL6A6	CCDS46911.1	r.?	-	-	Del	intronic	D	130300812	130300820	1	36	539.947	-	-	7	1	1	COL6A6|CCDS46911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL6A6|CCDS46911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	5	8	5	23	23	23	23	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265705	3	131032967	GAA	G	300	PASS	NEK11	CCDS3069.1	r.?	-	-	Del	intronic	D	131032967	131032973	2	12	269.973	-	-	5	1	1	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	2	5	4	22	22	22	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265707	3	131033053	GTT	G	300	PASS	NEK11	CCDS3069.1	r.?	-	-	Del	intronic	D	131033053	131033057	2	10	269.973	-	-	3	1	1	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	4	17	19	17	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265761	3	131182910	TC	T	300	PASS	MRPL3	CCDS3071.1	r.?	-	-	Del	intronic	D	131182910	131182917	1	12	269.973	-	-	6	1	1	MRPL3|CCDS3071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPL3|CCDS3071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	2	3	2	4	18	9	18	9	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760265954	3	131773091	TG	T	397	PASS	CPNE4	ENST00000512055	r.?	-	-	Del	intronic	D	131773091	131773098	1	18	377.361	-	-	6	1	1	CPNE4|ENST00000512055|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CPNE4|ENST00000512055|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	5	2	5	12	24	12	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760266170	3	132630903	GT	G	300	PASS	-	-	-	-	-	Del	-	D	132630903	132630912	1	12	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	7	3	34	25	34	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760266429	3	133489317	CT	C	360	PASS	TF	CCDS3080.1	r.?	-	-	Del	intronic	D	133489317	133489327	1	16	321.56	-	-	9	1	1	TF|CCDS3080.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TF|CCDS3080.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	4	4	24	19	24	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760266777	3	134880634	C	CT	360	PASS	EPHB1	CCDS46921.1	r.?	-	-	Ins	intronic	I	134880634	134880641	1	15	319.151	-	-	6	1	1	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	2	4	2	4	19	33	20	33	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760266895	3	135539373	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	135539373	135539381	1	16	320.356	-	-	7	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	3	3	4	3	25	18	25	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760266918	3	135727501	AT	A	420	PASS	PPP2R3A	CCDS3087.1	r.?	-	-	Del	intronic	D	135727501	135727507	1	8	377.963	-	-	5	1	1	PPP2R3A|CCDS3087.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R3A|CCDS3087.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	7	0	10	3	20	22	20	22	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760267245	3	136829280	TA	T	300	PASS	-	-	-	-	-	Del	-	D	136829280	136829289	1	10	268.769	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	1	4	1	6	4	17	4	17	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760267293	3	136995411	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	136995411	136995417	1	15	320.356	-	-	5	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	2	6	4	20	24	20	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760267316	3	137090991	GGTT	G	269	PASS	-	-	-	-	-	Del	-	D	137090991	137090998	3	12	266.963	-	-	2	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	3	2	21	16	21	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760267635	3	138292485	GA	G	480	PASS	CEP70	CCDS3102.1	r.?	-	-	Del	intronic	D	138292485	138292493	1	24	430.151	-	-	7	1	1	CEP70|CCDS3102.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CEP70|CCDS3102.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	5	3	30	11	30	11	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760268038	3	139656746	AT	A	389	PASS	CLSTN2	CCDS3112.1	r.?	-	-	Del	intronic	D	139656746	139656756	1	20	377.963	-	-	9	1	1	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	4	3	7	3	24	17	24	17	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760268420	3	141539535	AG	A	254	PASS	GRK7	CCDS3120.1	r.?	-	-	Del	downstream	D	141539535	141539544	1	15	323.968	-	-	8	1	1	GRK7|CCDS3120.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GRK7|CCDS3120.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	2	5	22	19	22	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760268481	3	141659857	CA	C	780	PASS	AC133435.2	ENST00000453700	r.?	-	-	Del	intronic	D	141659857	141659867	1	56	701.931	-	-	9	1	1	AC133435.2|ENST00000453700|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC133435.2|ENST00000453700|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	7	6	10	7	31	25	31	25	10	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760268557	3	141855077	CT	C	325	PASS	TFDP2	CCDS43159.1	r.?	-	-	Del	intronic	D	141855077	141855083	1	20	377.963	-	-	5	1	1	TFDP2|CCDS43159.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TFDP2|CCDS43159.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	8	5	25	31	25	31	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760268911	3	143022867	TG	T	300	PASS	SLC9A9	CCDS33872.1	r.?	-	-	Del	intronic	D	143022867	143022873	1	12	267.565	-	-	5	1	1	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	4	27	28	27	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760268995	3	143411001	CT	C	300	PASS	SLC9A9	CCDS33872.1	r.?	-	-	Del	intronic	D	143411001	143411011	1	12	269.973	-	-	9	1	1	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	3	4	12	25	12	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269020	3	143510781	AT	A	540	PASS	SLC9A9	CCDS33872.1	r.?	-	-	Del	intronic	D	143510781	143510789	1	30	485.952	-	-	7	1	1	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	5	4	7	6	21	25	21	25	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269064	3	143665042	GT	G	360	PASS	-	-	-	-	-	Del	-	D	143665042	143665050	1	12	323.968	-	-	7	1	1	-	-	./.	0	0	0	0	2	15	2	15	0	0	./.	1	5	1	6	1	24	1	24	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269098	3	143743391	GT	G	357	PASS	-	-	-	-	-	Del	-	D	143743391	143743399	1	56	701.931	-	-	7	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	6	7	6	8	29	33	29	33	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269202	3	144194755	TA	T	420	PASS	-	-	-	-	-	Del	-	D	144194755	144194764	1	18	377.361	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	5	5	5	11	19	11	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269657	3	146075718	GC	G	272	PASS	-	-	-	-	-	Del	-	D	146075718	146075724	1	15	323.968	-	-	5	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	4	2	4	4	18	19	18	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269658	3	146079810	TA	T	250	PASS	-	-	-	-	-	Del	-	D	146079810	146079820	1	15	323.968	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	5	5	19	12	19	12	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760269670	3	146180975	CT	C	300	PASS	PLSCR2	CCDS3134.1	r.?	-	-	Del	intronic	D	146180975	146180984	1	12	269.973	-	-	8	1	1	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	2	3	2	4	20	14	20	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760270046	3	148247358	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	148247358	148247361	1	12	266.963	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	14	0	0	./.	2	3	2	4	20	24	20	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760270107	3	148439975	GA	G	480	PASS	AGTR1	CCDS3137.1	r.?	-	-	Del	intronic	D	148439975	148439983	1	21	431.957	-	-	7	1	1	AGTR1|CCDS3137.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AGTR1|CCDS3137.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	6	2	6	3	22	21	22	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271308	3	152836594	GT	G	300	PASS	-	-	-	-	-	Del	-	D	152836594	152836600	1	12	269.973	-	-	5	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	2	3	2	16	9	16	9	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271332	3	152964584	TA	T	300	PASS	-	-	-	-	-	Del	-	D	152964584	152964594	1	10	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	15	2	15	2	0	0	./.	4	1	4	1	23	17	23	17	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271388	3	153182620	CT	C	480	PASS	-	-	-	-	-	Del	-	D	153182620	153182629	1	25	430.151	-	-	8	1	1	-	-	./.	0	0	0	0	4	12	4	12	0	0	./.	4	4	4	6	25	23	25	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271417	3	153337575	GT	G	360	PASS	-	-	-	-	-	Del	-	D	153337575	153337581	1	12	323.968	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	1	6	1	21	9	21	9	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271469	3	153598750	TC	T	300	PASS	-	-	-	-	-	Del	-	D	153598750	153598757	1	12	268.769	-	-	6	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	5	3	28	23	28	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271538	3	153921693	A	AT	360	PASS	ENSG00000114790	CCDS46938.1	r.?	-	-	Ins	intronic	I	153921693	153921701	1	12	320.356	-	-	7	1	1	ENSG00000114790|CCDS46938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000114790|CCDS46938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	1	5	1	6	23	21	23	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271563	3	153977296	GA	G	600	PASS	ENSG00000114790	CCDS46938.1	r.?	-	-	Del	downstream	D	153977296	153977304	1	36	539.947	-	-	7	1	1	ENSG00000114790|CCDS46938.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000114790|CCDS46938.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	11	12	11	0	0	./.	5	5	6	6	29	23	29	23	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271681	3	154478490	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	154478490	154478498	1	24	427.141	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	13	0	0	./.	5	3	5	4	22	23	22	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271729	3	154722262	GA	G	300	PASS	-	-	-	-	-	Del	-	D	154722262	154722272	1	6	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	0	7	1	18	12	18	12	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271835	3	155236523	CA	C	300	PASS	PLCH1	CCDS33881.1	r.?	-	-	Del	intronic	D	155236523	155236533	1	12	269.973	-	-	9	1	1	PLCH1|CCDS33881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCH1|CCDS33881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	3	2	14	18	14	18	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760271890	3	155471952	CA	C	360	PASS	-	-	-	-	-	Del	-	D	155471952	155471962	1	15	323.968	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	4	2	5	2	26	6	26	6	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760272752	3	158915697	CA	C	300	PASS	IQCJ	CCDS46947.1	r.?	-	-	Del	intronic	D	158915697	158915703	1	12	269.973	-	-	5	1	1	IQCJ|CCDS46947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCJ|CCDS46947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	2	3	2	3	10	16	10	16	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760272805	3	159155164	AT	A	269	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Del	intronic	D	159155164	159155172	1	10	266.361	-	-	7	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	1	4	2	5	19	25	19	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760272811	3	159260796	T	TA	300	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Ins	intronic	I	159260796	159260803	1	6	266.963	-	-	6	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	0	5	0	6	0	27	0	28	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760272818	3	159334054	AT	A	337	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Del	intronic	D	159334054	159334063	1	15	323.968	-	-	8	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	2	4	3	7	23	24	23	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760272821	3	159357794	CT	C	360	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Del	intronic	D	159357794	159357802	1	15	323.968	-	-	7	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	4	6	17	18	17	18	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760272936	3	159836872	CA	C	360	PASS	-	-	-	-	-	Del	-	D	159836872	159836881	1	15	323.366	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	4	2	4	2	21	21	21	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273031	3	160302549	CA	C	300	PASS	-	-	-	-	-	Del	-	D	160302549	160302559	1	6	268.167	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	0	5	2	5	15	19	15	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273213	3	161115909	CA	C	300	PASS	-	-	-	-	-	Del	-	D	161115909	161115917	1	10	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	2	4	15	16	15	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273228	3	161240769	GA	G	480	PASS	-	-	-	-	-	Del	-	D	161240769	161240776	1	24	431.957	-	-	6	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	5	3	6	3	27	16	27	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273251	3	161366662	CT	C	360	PASS	-	-	-	-	-	Del	-	D	161366662	161366671	1	12	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	1	7	4	24	20	24	20	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273311	3	161632966	AT	A	449	PASS	-	-	-	-	-	Del	-	D	161632966	161632975	1	24	425.335	-	-	8	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	3	5	3	5	16	21	16	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273446	3	162221527	AT	A	360	PASS	-	-	-	-	-	Del	-	D	162221527	162221534	1	12	323.968	-	-	6	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	1	5	1	6	12	19	12	19	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273535	3	162891556	CT	C	420	PASS	-	-	-	-	-	Del	-	D	162891556	162891564	1	20	377.963	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	4	21	23	21	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273556	3	163111124	TA	T	269	PASS	-	-	-	-	-	Del	-	D	163111124	163111131	1	12	269.973	-	-	6	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	3	3	9	19	9	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760273842	3	164258708	CA	C	360	PASS	-	-	-	-	-	Del	-	D	164258708	164258714	1	16	323.968	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	5	4	20	24	20	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274492	3	167100523	TA	T	329	PASS	ZBBX	CCDS3199.2	r.?	-	-	Del	upstream	D	167100523	167100532	1	15	323.968	-	-	8	1	1	ZBBX|CCDS3199.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZBBX|CCDS3199.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	25	12	25	0	0	./.	2	4	2	6	9	20	9	20	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274525	3	167352469	TA	T	420	PASS	WDR49	CCDS3201.1	r.?	-	-	Del	intronic	D	167352469	167352479	1	14	374.952	-	-	9	1	1	WDR49|CCDS3201.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	WDR49|CCDS3201.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	6	1	8	8	25	8	25	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274624	3	167874715	TG	T	420	PASS	-	-	-	-	-	Del	-	D	167874715	167874722	1	20	377.963	-	-	6	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	4	4	6	20	28	20	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274627	3	167912171	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	167912171	167912180	1	10	480.533	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	14	8	0	0	./.	9	0	11	2	34	19	34	19	11	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274632	3	167953976	GT	G	420	PASS	-	-	-	-	-	Del	-	D	167953976	167953986	1	18	377.963	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	5	3	7	16	24	16	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274672	3	168286409	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	168286409	168286416	1	12	266.963	-	-	6	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	3	3	19	15	19	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274860	3	169035115	GT	G	600	PASS	MECOM	ENST00000494292	r.?	-	-	Del	intronic	D	169035115	169035123	1	32	539.345	-	-	7	1	1	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	7	4	8	25	35	25	35	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274991	3	169697768	GA	G	360	PASS	SEC62	CCDS3210.1	r.?	-	-	Del	intronic	D	169697768	169697778	1	15	323.968	-	-	9	1	1	SEC62|CCDS3210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC62|CCDS3210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	4	4	5	21	22	21	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760274998	3	169727922	CA	C	420	PASS	-	-	-	-	-	Del	-	D	169727922	169727930	1	20	375.554	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	7	6	24	27	24	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760275023	3	169807788	CT	C	480	PASS	PHC3	CCDS46952.1	r.10251delA	c.?	p.?	Del	3'UTR variant	D	169807788	169807798	1	24	430.753	-	-	9	1	1	PHC3|CCDS46952.1|r.10251delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PHC3|CCDS46952.1|r.10251delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	16	17	16	0	0	./.	5	3	6	3	16	14	16	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760275280	3	170625015	TA	T	300	PASS	EIF5A2	CCDS3214.1	r.?	-	-	Del	intronic	D	170625015	170625025	1	12	269.973	-	-	9	1	1	EIF5A2|CCDS3214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF5A2|CCDS3214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	3	2	21	14	21	14	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760275335	3	170928493	AT	A	360	PASS	TNIK	CCDS46956.1	r.?	-	-	Del	intronic	D	170928493	170928500	1	12	323.968	-	-	6	1	1	TNIK|CCDS46956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNIK|CCDS46956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	1	6	2	20	24	20	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760275533	3	171723132	C	CA	689	PASS	-	-	-	-	-	Ins	-	I	171723132	171723138	1	45	640.711	-	-	5	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	8	4	9	6	19	24	21	25	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760275584	3	171847300	CCTT	C	449	PASS	FNDC3B	CCDS3217.1	r.?	-	-	Del	intronic	D	171847300	171847307	3	25	431.957	-	-	2	1	1	FNDC3B|CCDS3217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNDC3B|CCDS3217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	4	6	6	19	26	19	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760275804	3	172485231	CA	C	300	PASS	ECT2	CCDS3220.1	r.?	-	-	Del	intronic	D	172485231	172485240	1	6	269.371	-	-	8	1	1	ECT2|CCDS3220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ECT2|CCDS3220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	0	5	0	5	2	21	2	21	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276192	3	174340832	CA	C	480	PASS	NAALADL2	ENST00000434257	r.?	-	-	Del	intronic	D	174340832	174340842	1	25	430.753	-	-	9	1	1	NAALADL2|ENST00000434257|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NAALADL2|ENST00000434257|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	4	4	4	6	26	24	26	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276413	3	175088288	TG	T	300	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Del	intronic	D	175088288	175088298	1	10	269.973	-	-	9	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	7	1	27	1	27	1	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276435	3	175166876	T	TA	300	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Ins	intronic	I	175166876	175166884	1	12	266.963	-	-	7	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	3	2	18	18	18	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276455	3	175203980	AT	A	540	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Del	intronic	D	175203980	175203986	1	28	485.952	-	-	5	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	3	6	3	22	26	22	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276514	3	175372474	CT	C	277	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Del	intronic	D	175372474	175372483	1	6	269.973	-	-	8	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	0	5	2	6	22	27	22	27	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276589	3	175640414	CA	C	300	PASS	-	-	-	-	-	Del	-	D	175640414	175640422	1	12	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	2	4	2	19	2	19	2	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276617	3	175814362	CT	C	269	PASS	-	-	-	-	-	Del	-	D	175814362	175814372	1	10	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	1	4	1	12	2	12	2	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276648	3	175952935	GA	G	300	PASS	-	-	-	-	-	Del	-	D	175952935	175952945	1	10	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	4	1	16	16	16	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276740	3	176315714	AT	A	480	PASS	-	-	-	-	-	Del	-	D	176315714	176315724	1	21	430.151	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	6	4	8	21	28	21	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276751	3	176382010	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	176382010	176382019	1	12	266.963	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	13	12	0	0	./.	3	2	3	3	28	25	28	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276821	3	176626190	TA	T	300	PASS	-	-	-	-	-	Del	-	D	176626190	176626198	1	10	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	6	1	15	18	15	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760276846	3	176699954	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	176699954	176699963	1	20	373.748	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	15	12	0	0	./.	4	3	6	4	34	14	34	14	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277254	3	177823876	CA	C	360	PASS	-	-	-	-	-	Del	-	D	177823876	177823884	1	15	323.968	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	2	5	2	19	22	19	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277335	3	178178975	G	GA	300	PASS	KCNMB2	ENST00000437510	r.?	-	-	Ins	intronic	I	178178975	178178982	1	12	266.361	-	-	6	1	1	KCNMB2|ENST00000437510|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KCNMB2|ENST00000437510|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	12	0	0	./.	2	3	3	5	25	25	25	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277520	3	178900458	CA	C	360	PASS	PIK3CA	CCDS43171.1	r.?	-	-	Del	intronic	D	178900458	178900468	1	12	319.151	-	-	9	1	1	PIK3CA|CCDS43171.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PIK3CA|CCDS43171.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	1	5	1	7	22	24	22	24	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277590	3	179088994	TA	T	420	PASS	MFN1	CCDS3228.1	r.?	-	-	Del	intronic	D	179088994	179089003	1	20	377.963	-	-	8	1	1	MFN1|CCDS3228.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MFN1|CCDS3228.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	4	3	4	5	28	34	28	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277692	3	179304888	C	CA	300	PASS	ACTL6A	CCDS3231.1	r.?	-	-	Ins	intronic	I	179304888	179304894	1	6	266.963	-	-	5	1	1	ACTL6A|CCDS3231.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACTL6A|CCDS3231.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	0	5	0	5	2	24	2	24	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277788	3	179524802	G	GA	300	PASS	PEX5L	CCDS3236.1	r.?	-	-	Ins	intronic	I	179524802	179524809	1	10	266.963	-	-	6	1	1	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	4	1	7	1	28	18	28	19	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277870	3	179845039	CT	C	300	PASS	-	-	-	-	-	Del	-	D	179845039	179845047	1	10	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	2	5	30	33	30	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277876	3	179863063	CA	C	540	PASS	-	-	-	-	-	Del	-	D	179863063	179863073	1	30	485.35	-	-	9	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	5	4	6	6	18	11	18	11	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760277946	3	180305395	GA	G	360	PASS	-	-	-	-	-	Del	-	D	180305395	180305405	1	15	323.968	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	6	3	20	21	20	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278087	3	180790101	AT	A	660	PASS	-	-	-	-	-	Del	-	D	180790101	180790110	1	36	593.941	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	8	5	8	28	23	28	23	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278145	3	181065504	GA	G	389	PASS	-	-	-	-	-	Del	-	D	181065504	181065512	1	20	377.963	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	3	5	5	32	31	32	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278195	3	181279183	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	181279183	181279193	2	15	318.549	-	-	9	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	4	2	4	4	21	28	21	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278297	3	181616181	GT	G	480	PASS	-	-	-	-	-	Del	-	D	181616181	181616190	1	21	428.947	-	-	8	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	6	2	6	5	21	25	21	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278349	3	181772924	AT	A	300	PASS	-	-	-	-	-	Del	-	D	181772924	181772933	1	12	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	3	2	5	4	9	14	9	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278382	3	181949907	TA	T	360	PASS	-	-	-	-	-	Del	-	D	181949907	181949915	1	15	323.968	-	-	7	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	2	4	2	6	17	27	17	27	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278395	3	182003286	CA	C	300	PASS	-	-	-	-	-	Del	-	D	182003286	182003295	1	10	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	5	5	27	28	27	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278445	3	182245509	GTA	G	420	PASS	-	-	-	-	-	Del	-	D	182245509	182245513	2	14	377.963	-	-	1	1	-	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	1	6	1	33	19	33	19	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278456	3	182288442	AT	A	300	PASS	-	-	-	-	-	Del	-	D	182288442	182288450	1	10	269.973	-	-	7	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	1	4	1	5	24	25	24	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278538	3	182529819	CT	C	300	PASS	ATP11B	CCDS33896.1	r.?	-	-	Del	intronic	D	182529819	182529829	1	12	269.973	-	-	9	1	1	ATP11B|CCDS33896.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP11B|CCDS33896.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	3	3	25	18	25	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278658	3	182885750	TC	T	420	PASS	LAMP3	ENST00000476015	r.?	-	-	Del	upstream	D	182885750	182885758	1	20	377.963	-	-	7	1	1	LAMP3|ENST00000476015|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LAMP3|ENST00000476015|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	8	5	8	0	0	./.	3	4	8	7	29	29	29	29	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278824	3	183352923	CA	C	300	PASS	KLHL24	CCDS3246.1	r.?	-	-	Del	upstream	D	183352923	183352933	1	12	269.973	-	-	9	1	1	KLHL24|CCDS3246.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KLHL24|CCDS3246.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	3	6	25	38	25	38	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760278983	3	183713604	G	GT	300	PASS	ABCC5	CCDS43176.1	r.?	-	-	Ins	intronic	I	183713604	183713614	1	10	264.555	-	-	9	1	1	ABCC5|CCDS43176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCC5|CCDS43176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	4	2	40	21	40	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279120	3	184084292	A	AT	371	PASS	CLCN2	CCDS3263.1	r.?	-	-	Ins	upstream	I	184084292	184084300	1	24	476.921	-	-	7	1	1	CLCN2|CCDS3263.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	POLR2H|CCDS3264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	14	0	0	./.	7	2	8	2	39	23	39	25	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279164	3	184167227	CT	C	600	PASS	EIF2B5	ENST00000444495	r.?	-	-	Del	intronic	D	184167227	184167237	1	32	533.324	-	-	9	1	1	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	3	7	3	8	27	33	27	33	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279245	3	184381178	TA	T	300	PASS	EIF2B5	ENST00000444495	r.?	-	-	Del	intronic	D	184381178	184381184	1	12	269.973	-	-	5	1	1	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	4	4	28	33	28	33	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279319	3	184558003	AT	A	480	PASS	VPS8	CCDS46971.1	r.?	-	-	Del	intronic	D	184558003	184558012	1	21	431.957	-	-	8	1	1	VPS8|CCDS46971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS8|ENST00000424463|r.2039delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	12	15	12	0	0	./.	2	6	2	7	11	41	11	41	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279406	3	184836455	TA	T	360	PASS	C3orf70	CCDS33900.1	r.?	-	-	Del	intronic	D	184836455	184836464	1	16	323.968	-	-	8	1	1	C3orf70|CCDS33900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf70|CCDS33900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	3	3	4	4	14	20	14	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279442	3	184908272	CA	C	300	PASS	EHHADH	CCDS33901.1	r.?	-	-	Del	downstream	D	184908272	184908281	1	12	269.371	-	-	8	1	-	EHHADH|CCDS33901.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	EHHADH|CCDS33901.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	3	5	21	31	21	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279800	3	185727750	CT	C	360	PASS	-	-	-	-	-	Del	-	D	185727750	185727760	1	16	323.968	-	-	9	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	3	3	3	5	32	20	32	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279847	3	185848172	AG	A	360	PASS	-	-	-	-	-	Del	-	D	185848172	185848174	1	12	323.968	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	5	1	28	8	28	8	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279860	3	185882309	C	CT	300	PASS	DGKG	CCDS3274.1	r.?	-	-	Ins	intronic	I	185882309	185882318	1	12	266.361	-	-	8	1	1	DGKG|CCDS3274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DGKG|CCDS3274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	2	5	3	28	36	29	37	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760279944	3	186237824	CA	C	480	PASS	-	-	-	-	-	Del	-	D	186237824	186237832	1	24	431.355	-	-	7	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	3	5	5	8	27	33	27	33	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280004	3	186437219	GA	G	360	PASS	KNG1	CCDS43183.1	r.?	-	-	Del	intronic	D	186437219	186437225	1	16	323.968	-	-	5	1	1	KNG1|CCDS43183.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KNG1|CCDS43183.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	3	4	17	32	17	32	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280063	3	186538933	CT	C	449	PASS	-	-	-	-	-	Del	-	D	186538933	186538942	1	25	431.957	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	4	4	5	19	28	19	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280206	3	186910854	GT	G	360	PASS	RTP1	CCDS3287.2	r.?	-	-	Del	upstream	D	186910854	186910863	1	15	323.968	-	-	8	1	1	RTP1|CCDS3287.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RTP1|CCDS3287.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	2	5	23	33	23	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280331	3	187242702	AC	A	300	PASS	-	-	-	-	-	Del	-	D	187242702	187242709	1	10	269.973	-	-	6	1	1	-	-	./.	0	0	0	0	3	12	3	12	0	0	./.	1	4	5	5	29	22	29	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280401	3	187447818	GA	G	420	PASS	BCL6	CCDS3289.1	r.751-10delu	c.384-10delt	p.?	Del	splice region	D	187447818	187447826	1	18	377.963	-	-	7	1	1	BCL6|CCDS3289.1|r.751-10delu|c.384-10delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	BCL6|CCDS3289.1|r.751-10delu|c.384-10delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	7	15	7	15	0	0	./.	2	5	2	7	20	22	20	22	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280424	3	187517475	AT	A	360	PASS	-	-	-	-	-	Del	-	D	187517475	187517485	1	16	323.968	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	4	6	23	26	23	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280552	3	187976471	C	CA	420	PASS	LPP	CCDS3291.1	r.?	-	-	Ins	intronic	I	187976471	187976480	1	20	365.319	-	-	8	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	16	0	0	./.	3	4	4	5	38	30	39	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280574	3	188070885	C	CT	300	PASS	LPP	CCDS3291.1	r.?	-	-	Ins	intronic	I	188070885	188070893	1	12	266.963	-	-	7	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	6	4	22	26	23	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280655	3	188274120	GT	G	360	PASS	LPP	CCDS3291.1	r.?	-	-	Del	intronic	D	188274120	188274129	1	16	323.968	-	-	8	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	5	3	23	24	23	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280773	3	188581533	CT	C	360	PASS	LPP	CCDS3291.1	r.?	-	-	Del	intronic	D	188581533	188581541	1	15	322.764	-	-	7	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	2	4	4	22	30	22	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280845	3	188777388	CA	C	420	PASS	TPRG1	CCDS3292.1	r.?	-	-	Del	intronic	D	188777388	188777394	1	20	377.963	-	-	5	1	1	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	3	5	6	20	28	20	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760280860	3	188867643	TA	T	300	PASS	TPRG1	CCDS3292.1	r.?	-	-	Del	intronic	D	188867643	188867653	1	12	269.973	-	-	9	1	1	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	5	3	31	24	31	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281013	3	189426735	GT	G	300	PASS	TP63	CCDS3293.1	r.?	-	-	Del	intronic	D	189426735	189426742	1	10	269.973	-	-	6	1	1	TP63|CCDS3293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TP63|CCDS3293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	2	5	16	21	16	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281059	3	189563568	AT	A	420	PASS	TP63	CCDS3293.1	r.?	-	-	Del	intronic	D	189563568	189563578	1	20	377.963	-	-	9	1	1	TP63|CCDS3293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TP63|CCDS3293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	4	5	4	28	25	28	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281335	3	190276627	TG	T	360	PASS	IL1RAP	CCDS3298.1	r.?	-	-	Del	intronic	D	190276627	190276630	1	16	323.968	-	-	2	1	1	IL1RAP|CCDS3298.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IL1RAP|CCDS3298.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	3	4	23	19	23	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281375	3	190378531	A	AT	300	PASS	IL1RAP	ENST00000317757	r.?	-	-	Ins	downstream	I	190378531	190378538	1	10	266.963	-	-	6	1	1	IL1RAP|ENST00000317757|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	IL1RAP|ENST00000317757|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	15	16	15	0	0	./.	4	1	6	1	21	20	21	20	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281451	3	190711543	CT	C	300	PASS	-	-	-	-	-	Del	-	D	190711543	190711553	1	12	269.973	-	-	9	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	3	2	6	5	31	35	31	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281514	3	190894438	TA	T	300	PASS	-	-	-	-	-	Del	-	D	190894438	190894447	1	12	269.973	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	4	4	25	24	25	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281646	3	191176408	CT	C	420	PASS	-	-	-	-	-	Del	-	D	191176408	191176416	1	14	374.952	-	-	7	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	6	1	7	2	26	25	26	25	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760281833	3	191796904	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	191796904	191796912	1	18	373.748	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	2	7	3	24	21	24	21	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282119	3	192918797	CT	C	412	PASS	-	-	-	-	-	Del	-	D	192918797	192918807	1	18	377.963	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	5	2	6	6	30	19	30	19	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282260	3	193345840	TC	T	540	PASS	OPA1	CCDS33917.1	r.?	-	-	Del	intronic	D	193345840	193345846	1	30	485.952	-	-	5	1	1	OPA1|CCDS33917.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPA1|CCDS33917.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	5	4	5	6	25	24	25	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282285	3	193411429	CA	C	420	PASS	OPA1	CCDS33917.1	r.?	-	-	Del	intronic	D	193411429	193411439	1	18	377.963	-	-	9	1	1	OPA1|CCDS33917.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	OPA1|CCDS33917.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	2	6	3	18	23	18	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282468	3	193902037	CT	C	420	PASS	-	-	-	-	-	Del	-	D	193902037	193902046	1	20	375.554	-	-	8	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	4	3	5	3	21	24	21	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282656	3	194333403	C	CT	300	PASS	TMEM44	CCDS3308.1	r.?	-	-	Ins	intronic	I	194333403	194333412	1	10	261.544	-	-	8	1	1	TMEM44|CCDS3308.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM44|CCDS3308.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	5	3	24	21	24	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282694	3	194404562	CT	C	480	PASS	FAM43A	CCDS33923.1	r.?	-	-	Del	upstream	D	194404562	194404572	1	24	431.957	-	-	9	1	-	FAM43A|CCDS33923.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FAM43A|CCDS33923.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	11	14	11	0	0	./.	5	3	5	5	25	20	25	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282735	3	194536907	CA	C	540	PASS	-	-	-	-	-	Del	-	D	194536907	194536917	1	28	485.952	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	3	6	4	30	29	30	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282743	3	194555604	CA	C	480	PASS	-	-	-	-	-	Del	-	D	194555604	194555614	1	24	426.539	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	3	7	4	28	30	28	30	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282850	3	194935373	AG	A	265	PASS	C3orf21	CCDS43188.1	r.?	-	-	Del	intronic	D	194935373	194935378	1	18	377.963	-	-	4	1	1	C3orf21|CCDS43188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf21|CCDS43188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	5	2	5	2	22	17	22	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760282960	3	195287420	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	195287420	195287427	1	10	266.963	-	-	6	1	1	-	-	./.	0	0	0	0	9	11	10	11	0	0	./.	1	4	1	5	17	27	17	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283156	3	195595228	C	CG	360	PASS	TNK2	CCDS33927.1	r.2274_2275insc	c.2129_2130insC	p.P711fs*4	Ins	frameshift	I	195595228	195595237	1	16	313.733	-	-	8	1	1	TNK2|CCDS33927.1|r.2274_2275insc|c.2129_2130insC|p.P711fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	TNK2|CCDS33927.1|r.2274_2275insc|c.2129_2130insC|p.P711fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	7	4	7	4	0	0	./.	3	3	3	4	23	24	23	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283265	3	195820408	TA	T	360	PASS	-	-	-	-	-	Del	-	D	195820408	195820417	1	12	323.968	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	1	6	2	37	15	37	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283315	3	195941414	TG	T	300	PASS	ENSG00000163959	CCDS3314.1	r.?	-	-	Del	upstream	D	195941414	195941424	1	12	269.973	-	-	9	1	1	ENSG00000163959|CCDS3314.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PCYT1A|ENST00000441879|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	5	5	23	21	23	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283581	3	196462009	C	CA	360	PASS	PIGX	CCDS3320.1	r.2171_2172insa	c.?	p.?	Ins	3'UTR variant	I	196462009	196462017	1	15	319.754	-	-	7	1	1	PIGX|CCDS3320.1|r.2171_2172insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	PIGX|CCDS3320.1|r.2171_2172insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	5	6	15	20	15	21	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283756	3	196881170	CA	C	360	PASS	DLG1	CCDS3327.1	r.?	-	-	Del	intronic	D	196881170	196881179	1	16	323.968	-	-	8	1	1	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	26	15	26	0	0	./.	3	3	4	3	24	8	24	8	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283797	3	197010232	CA	C	360	PASS	DLG1	CCDS3327.1	r.?	-	-	Del	intronic	D	197010232	197010242	1	7	323.366	-	-	9	1	1	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	0	6	0	8	0	25	0	25	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283804	3	197017033	GA	G	300	PASS	DLG1	CCDS3327.1	r.?	-	-	Del	intronic	D	197017033	197017043	1	10	269.973	-	-	9	1	1	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	4	1	5	2	25	19	25	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760283918	3	197346770	GA	G	272	PASS	-	-	-	-	-	Del	-	D	197346770	197346780	1	12	269.371	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	3	19	27	19	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284056	3	197754224	CT	C	480	PASS	LMLN	CCDS3332.1	r.?	-	-	Del	intronic	D	197754224	197754233	1	24	431.957	-	-	8	1	1	LMLN|CCDS3332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMLN|CCDS3332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	5	4	9	30	32	30	32	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284074	3	197803397	GA	G	420	PASS	-	-	-	-	-	Del	-	D	197803397	197803407	1	14	376.156	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	6	2	8	22	24	22	24	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284187	4	74044	TA	T	300	PASS	-	-	-	-	-	Del	-	D	74044	74054	1	12	264.234	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	5	22	28	22	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284253	4	267784	C	CA	300	PASS	ENSG00000186777	CCDS46990.1	r.?	-	-	Ins	intronic	I	267784	267792	1	10	266.642	-	-	7	1	1	ENSG00000186777|CCDS46990.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000186777|CCDS46990.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	16	0	0	./.	1	4	2	6	6	25	6	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284299	4	388953	AT	A	263	PASS	ENSG00000186777	ENST00000414523	r.?	-	-	Del	intronic	D	388953	388961	1	20	360.656	-	-	7	1	1	ENSG00000186777|ENST00000414523|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000186777|ENST00000414523|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	4	4	5	28	17	28	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284344	4	469381	CT	C	360	PASS	ABCA11P	ENST00000338977	r.?	-	-	Del	intronic	D	469381	469389	1	15	323.583	-	-	7	1	1	ABCA11P|ENST00000338977|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABCA11P|ENST00000338977|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	2	4	2	6	29	19	29	19	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284423	4	711183	C	CT	261	PASS	PCGF3	CCDS3339.2	r.?	-	-	Ins	intronic	I	711183	711193	1	12	261.224	-	-	9	1	1	PCGF3|CCDS3339.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCGF3|CCDS3339.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	2	3	28	32	29	32	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284592	4	1149683	CT	C	300	PASS	-	-	-	-	-	Del	-	D	1149683	1149689	1	12	269.652	-	-	5	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	5	2	29	24	29	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284664	4	1380681	A	AT	360	PASS	ENSG00000163945	CCDS33938.1	r.3509_3510insu	c.?	p.?	Ins	3'UTR variant	I	1380681	1380688	1	7	318.766	-	-	6	1	1	ENSG00000163945|CCDS33938.1|r.3509_3510insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ENSG00000163945|CCDS33938.1|r.3509_3510insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	5	9	5	9	0	0	./.	0	6	0	7	8	31	8	32	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284668	4	1396144	GA	G	360	PASS	NKX1-1	ENST00000422806	r.?	-	-	Del	downstream	D	1396144	1396149	1	16	316.96	-	-	4	1	1	NKX1-1|ENST00000422806|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NKX1-1|ENST00000422806|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	4	3	27	19	27	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284711	4	1637853	CG	C	360	PASS	FAM53A	CCDS33939.1	r.?	-	-	Del	downstream	D	1637853	1637855	1	12	322.981	-	-	1	1	1	FAM53A|CCDS33939.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAM53A|ENST00000489029|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	1	5	3	26	16	26	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284771	4	1766979	TC	T	300	PASS	-	-	-	-	-	Del	-	D	1766979	1766985	1	10	269.652	-	-	5	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	4	3	30	31	30	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284791	4	1870908	TC	T	300	PASS	WHSC1	ENST00000508803	r.?	-	-	Del	upstream	D	1870908	1870911	1	10	269.652	-	-	2	1	1	WHSC1|ENST00000508803|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	WHSC1|ENST00000508803|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	4	1	4	1	29	28	29	28	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760284804	4	1916062	CT	C	360	PASS	WHSC1	CCDS3356.1	r.?	-	-	Del	intronic	D	1916062	1916072	1	16	322.981	-	-	9	1	1	WHSC1|CCDS3356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WHSC1|CCDS3356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	5	5	22	22	22	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285091	4	2702234	TAAG	T	420	PASS	FAM193A	CCDS33943.1	r.3814_3816delAAG	c.3463_3465delAAG	p.K1158delK	Del	inframe	D	2702234	2702246	3	18	377.513	-	-	3	1	1	FAM193A|CCDS33943.1|r.3814_3816delAAG|c.3463_3465delAAG|p.K1158delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	FAM193A|CCDS33943.1|r.3814_3816delAAG|c.3463_3465delAAG|p.K1158delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	11	12	11	12	0	0	./.	2	5	2	5	24	29	24	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285142	4	2772872	TA	T	420	PASS	-	-	-	-	-	Del	-	D	2772872	2772881	1	20	376.911	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	4	4	7	27	19	27	19	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285157	4	2784928	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	2784928	2784935	1	10	266.642	-	-	6	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	1	4	1	6	22	31	22	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285206	4	2896575	TA	T	360	PASS	ADD1	CCDS3364.1	r.?	-	-	Del	intronic	D	2896575	2896585	1	12	323.583	-	-	9	1	1	ADD1|CCDS3364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADD1|CCDS3364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	5	1	5	3	23	16	23	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285211	4	2921503	TA	T	300	PASS	ADD1	CCDS3364.1	r.?	-	-	Del	intronic	D	2921503	2921512	1	12	269.652	-	-	8	1	1	ADD1|CCDS3364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADD1|CCDS3364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	2	7	19	22	19	22	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285257	4	3064387	CG	C	360	PASS	-	-	-	-	-	Del	-	D	3064387	3064389	1	16	323.583	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	3	3	3	5	33	31	33	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285284	4	3158966	ATACT	A	420	PASS	HTT	CCDS43206.1	r.?	-	-	Del	intronic	D	3158966	3158974	4	20	371.493	-	-	1	1	1	HTT|CCDS43206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTT|CCDS43206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	3	5	3	22	27	22	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285666	4	3962687	CA	C	300	PASS	AC226119.1	ENST00000509919	r.?	-	-	Del	upstream	D	3962687	3962694	1	10	269.652	-	-	6	1	1	AC226119.1|ENST00000509919|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC226119.1|ENST00000509919|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	3	14	3	14	0	0	./.	1	4	1	4	13	20	13	20	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285689	4	4031924	AC	A	360	PASS	AC116562.2	ENST00000503960	r.?	-	-	Del	upstream	D	4031924	4031929	1	15	323.583	-	-	4	1	1	AC116562.2|ENST00000503960|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC116562.2|ENST00000503960|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	8	7	8	7	0	0	./.	2	4	2	6	15	34	15	34	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285802	4	4327278	TGC	T	540	PASS	ZBTB49	CCDS3375.1	r.?	-	-	Del	downstream	D	4327278	4327282	2	28	481.762	-	-	1	1	1	ZBTB49|CCDS3375.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZBTB49|CCDS3375.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	10	6	10	0	0	./.	6	3	8	3	28	22	28	22	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285960	4	4838164	AT	A	300	PASS	-	-	-	-	-	Del	-	D	4838164	4838174	1	10	267.846	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	1	4	1	17	26	17	26	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760285992	4	4968670	TA	T	660	PASS	-	-	-	-	-	Del	-	D	4968670	4968679	1	42	593.235	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	5	7	5	18	25	18	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286075	4	5184179	CT	C	360	PASS	STK32B	CCDS3380.1	r.?	-	-	Del	intronic	D	5184179	5184189	1	15	323.583	-	-	9	1	1	STK32B|CCDS3380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK32B|CCDS3380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	2	4	3	5	23	38	23	38	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286195	4	5712246	AAC	A	360	PASS	EVC	CCDS3383.1	r.?	-	-	Del	upstream	D	5712246	5712258	2	15	322.981	-	-	5	1	1	EVC|CCDS3383.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	EVC|CCDS3383.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	16	12	16	0	0	./.	2	4	2	4	30	27	30	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286211	4	5746915	TC	T	300	PASS	EVC	CCDS3383.1	r.?	-	-	Del	intronic	D	5746915	5746917	1	6	269.652	-	-	1	1	1	EVC|CCDS3383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EVC|CCDS3383.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	0	5	0	30	8	30	8	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286245	4	5823776	TC	T	300	PASS	EVC	CCDS3383.1	r.?	-	-	Del	intronic	D	5823776	5823783	1	6	269.652	-	-	6	1	1	EVC|CCDS3383.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	EVC|CCDS3383.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	5	0	6	2	27	30	27	30	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286278	4	5925141	AG	A	420	PASS	C4orf50	CCDS3384.1	r.?	-	-	Del	intronic	D	5925141	5925147	1	20	376.309	-	-	5	1	1	C4orf50|CCDS3384.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	C4orf50|CCDS3384.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	4	3	6	16	27	16	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286380	4	6226195	TA	T	300	PASS	-	-	-	-	-	Del	-	D	6226195	6226204	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	4	1	8	2	37	18	37	18	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286495	4	6627467	CA	C	445	PASS	MAN2B2	CCDS33951.1	r.?	-	-	Del	downstream	D	6627467	6627477	1	32	539.305	-	-	9	1	1	MAN2B2|CCDS33951.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MAN2B2|CCDS33951.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	11	12	11	0	0	./.	7	3	12	4	31	24	31	24	12	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286768	4	7371865	CT	C	300	PASS	SORCS2	CCDS47008.1	r.?	-	-	Del	intronic	D	7371865	7371874	1	12	269.652	-	-	8	1	1	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	6	3	38	33	38	33	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286858	4	7600313	TG	T	420	PASS	SORCS2	CCDS47008.1	r.?	-	-	Del	intronic	D	7600313	7600320	1	18	377.513	-	-	6	1	1	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	2	5	4	6	31	24	31	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286870	4	7632540	CCT	C	300	PASS	SORCS2	CCDS47008.1	r.?	-	-	Del	intronic	D	7632540	7632543	2	6	269.652	-	-	1	1	1	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	0	5	0	5	22	34	22	34	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760286991	4	7950168	GT	G	420	PASS	-	-	-	-	-	Del	-	D	7950168	7950177	1	18	375.707	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	2	6	7	36	30	36	30	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287027	4	8135713	AG	A	360	PASS	ABLIM2	CCDS47015.1	r.?	-	-	Del	intronic	D	8135713	8135722	1	7	323.583	-	-	8	1	1	ABLIM2|CCDS47015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABLIM2|CCDS47015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	0	6	2	6	17	19	17	19	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287086	4	8320138	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	8320138	8320144	1	12	319.971	-	-	5	1	1	-	-	./.	0	0	0	0	11	7	12	7	0	0	./.	5	1	7	2	29	22	29	22	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287190	4	8681862	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	8681862	8681876	2	12	322.379	-	-	6	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	1	5	1	5	22	35	22	35	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287257	4	8930269	GA	G	300	PASS	-	-	-	-	-	Del	-	D	8930269	8930279	1	10	267.846	-	-	9	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	4	1	4	1	27	15	27	15	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287341	4	9184273	CT	C	534	PASS	ENSG00000226350	ENST00000429096	r.?	-	-	Del	intronic	D	9184273	9184282	1	24	485.374	-	-	8	1	1	ENSG00000226350|ENST00000429096|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ENSG00000226350|ENST00000429096|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	2	7	5	7	16	16	16	16	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287646	4	10109274	TG	T	300	PASS	WDR1	ENST00000382452	r.?	-	-	Del	intronic	D	10109274	10109280	1	12	268.448	-	-	5	1	1	WDR1|ENST00000382452|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR1|ENST00000382452|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	3	2	35	24	35	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287755	4	10440428	CA	C	420	PASS	ZNF518B	CCDS33960.1	r.?	-	-	Del	downstream	D	10440428	10440436	1	20	377.513	-	-	7	1	1	ZNF518B|CCDS33960.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF518B|CCDS33960.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	12	5	12	0	0	./.	4	3	6	3	27	24	27	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287789	4	10494335	TG	T	300	PASS	CLNK	CCDS47024.1	r.?	-	-	Del	intronic	D	10494335	10494342	1	10	269.652	-	-	6	1	1	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	4	1	30	30	30	30	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287810	4	10562698	A	AT	360	PASS	CLNK	CCDS47024.1	r.?	-	-	Ins	intronic	I	10562698	10562708	1	15	319.369	-	-	9	1	1	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	10	14	0	0	./.	4	2	5	1	33	28	34	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760287873	4	10797866	CT	C	360	PASS	-	-	-	-	-	Del	-	D	10797866	10797876	1	15	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	3	4	24	19	24	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288187	4	11802429	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	11802429	11802439	1	6	266.642	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	0	5	2	5	5	17	5	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288221	4	12033333	GA	G	300	PASS	-	-	-	-	-	Del	-	D	12033333	12033338	1	12	269.652	-	-	4	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	5	4	21	25	21	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288331	4	12602560	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	12602560	12602566	2	12	323.583	-	-	5	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	1	5	1	5	13	24	13	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288362	4	12681698	GA	G	480	PASS	-	-	-	-	-	Del	-	D	12681698	12681708	1	24	431.444	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	3	5	3	21	21	21	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288515	4	13239746	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	13239746	13239756	1	18	372.697	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	2	5	3	30	21	30	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288520	4	13290167	T	TTTG	300	PASS	-	-	-	-	-	Ins	-	I	13290167	13290195	3	12	260.019	-	-	9	1	-	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	2	3	4	35	30	35	32	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288537	4	13390037	ACTC	A	360	PASS	RAB28	CCDS3409.1	r.?	-	-	Del	intronic	D	13390037	13390043	3	15	323.583	-	-	1	1	1	RAB28|CCDS3409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB28|CCDS3409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	2	4	19	37	19	37	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288554	4	13519672	AT	A	300	PASS	-	-	-	-	-	Del	-	D	13519672	13519682	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	3	23	17	23	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288695	4	13991813	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	13991813	13991822	1	10	266.04	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	1	4	4	6	23	33	23	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288729	4	14107501	AT	A	300	PASS	-	-	-	-	-	Del	-	D	14107501	14107507	1	12	269.652	-	-	5	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	3	3	17	25	17	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288809	4	14329470	GA	G	420	PASS	-	-	-	-	-	Del	-	D	14329470	14329479	1	14	372.697	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	1	7	2	24	7	24	7	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760288817	4	14356376	CT	C	420	PASS	-	-	-	-	-	Del	-	D	14356376	14356385	1	20	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	4	3	4	12	22	12	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289401	4	16456633	TA	T	420	PASS	-	-	-	-	-	Del	-	D	16456633	16456643	1	20	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	3	6	4	25	32	25	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289438	4	16576979	TA	T	420	PASS	LDB2	CCDS3420.1	r.?	-	-	Del	intronic	D	16576979	16576988	1	18	377.513	-	-	8	1	1	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	5	3	6	23	27	23	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289477	4	16687673	TA	T	329	PASS	LDB2	CCDS3420.1	r.?	-	-	Del	intronic	D	16687673	16687683	1	15	319.971	-	-	9	1	1	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	2	4	24	36	24	36	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289496	4	16746090	AT	A	300	PASS	LDB2	CCDS3420.1	r.?	-	-	Del	intronic	D	16746090	16746100	1	10	267.244	-	-	9	1	1	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	2	7	11	25	11	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289673	4	17325472	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	17325472	17325481	1	14	373.299	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	1	6	2	7	22	27	23	28	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289674	4	17325787	CCAGA	C	298	PASS	-	-	-	-	-	Del	-	D	17325787	17325794	4	15	322.379	-	-	1	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	4	2	5	4	18	24	18	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289833	4	17636400	ATTC	A	418	PASS	FAM184B	CCDS47033.1	r.?	-	-	Del	intronic	D	17636400	17636406	3	25	431.444	-	-	1	1	1	FAM184B|CCDS47033.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM184B|CCDS47033.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	4	4	27	30	27	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289884	4	17739292	T	TC	480	PASS	FAM184B	CCDS47033.1	r.?	-	-	Ins	intronic	I	17739292	17739298	1	24	426.627	-	-	5	1	1	FAM184B|CCDS47033.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM184B|CCDS47033.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	16	10	0	0	./.	3	5	5	5	33	32	33	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289945	4	18189744	TG	T	300	PASS	-	-	-	-	-	Del	-	D	18189744	18189750	1	12	269.652	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	3	3	28	24	28	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289950	4	18223043	C	CA	535	PASS	-	-	-	-	-	Ins	-	I	18223043	18223044	1	30	479.956	-	-	0	1	1	-	-	./.	0	0	0	0	8	10	8	11	0	0	./.	5	4	5	5	20	30	20	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760289998	4	18382820	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	18382820	18382828	1	7	319.971	-	-	7	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	0	6	1	7	9	33	9	33	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290107	4	18773676	TA	T	600	PASS	-	-	-	-	-	Del	-	D	18773676	18773686	1	27	539.305	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	8	2	8	6	27	27	27	27	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290175	4	18974879	AT	A	480	PASS	-	-	-	-	-	Del	-	D	18974879	18974886	1	25	431.444	-	-	6	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	4	5	5	28	32	28	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290196	4	19069962	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	19069962	19069971	1	18	373.299	-	-	8	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	5	2	6	2	34	14	34	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290316	4	19536617	GA	G	329	PASS	-	-	-	-	-	Del	-	D	19536617	19536625	1	16	322.981	-	-	7	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	3	3	3	3	19	24	19	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290369	4	19765203	GT	G	300	PASS	-	-	-	-	-	Del	-	D	19765203	19765213	1	10	268.448	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	1	6	6	23	22	23	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290413	4	19968806	AT	A	420	PASS	-	-	-	-	-	Del	-	D	19968806	19968811	1	20	377.513	-	-	4	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	3	4	3	4	17	28	17	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290474	4	20218090	CGA	C	300	PASS	-	-	-	-	-	Del	-	D	20218090	20218101	2	12	269.652	-	-	5	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	2	5	2	28	12	28	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290654	4	20858137	TGTGA	T	269	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	20858137	20858144	4	12	269.652	-	-	1	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	3	3	21	24	21	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290690	4	20982586	AT	A	360	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	20982586	20982593	1	15	323.583	-	-	6	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	2	4	2	29	28	29	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290757	4	21241241	G	GA	304	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Ins	intronic	I	21241241	21241248	1	24	426.025	-	-	6	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	5	3	5	3	31	41	32	41	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290770	4	21277590	CA	C	300	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21277590	21277600	1	6	269.652	-	-	9	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	0	5	2	6	26	30	26	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290795	4	21367889	T	TA	360	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Ins	intronic	I	21367889	21367897	1	15	319.369	-	-	7	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	4	2	4	26	32	26	32	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760290806	4	21388051	TA	T	300	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21388051	21388061	1	12	269.652	-	-	9	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	4	6	20	22	20	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291180	4	22636700	GC	G	300	PASS	-	-	-	-	-	Del	-	D	22636700	22636706	1	12	269.05	-	-	5	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	3	2	5	2	25	19	25	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291278	4	23139856	GA	G	360	PASS	-	-	-	-	-	Del	-	D	23139856	23139866	1	12	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	1	5	1	16	13	16	13	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291337	4	23298312	GA	G	420	PASS	-	-	-	-	-	Del	-	D	23298312	23298317	1	20	377.513	-	-	4	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	4	4	4	21	25	21	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291356	4	23360403	GA	G	420	PASS	-	-	-	-	-	Del	-	D	23360403	23360413	1	14	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	6	1	7	18	26	18	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291872	4	24802555	CT	C	420	PASS	SOD3	CCDS3430.1	r.?	-	-	Del	downstream	D	24802555	24802564	1	20	375.105	-	-	8	1	1	SOD3|CCDS3430.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	SOD3|CCDS3430.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	8	12	8	12	0	0	./.	3	4	3	5	20	28	20	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291924	4	24972050	AC	A	480	PASS	CCDC149	ENST00000389609	r.?	-	-	Del	intronic	D	24972050	24972056	1	24	430.842	-	-	5	1	1	CCDC149|ENST00000389609|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC149|ENST00000389609|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	3	6	4	23	31	23	31	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760291961	4	25058794	TC	T	360	PASS	-	-	-	-	-	Del	-	D	25058794	25058803	1	15	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	2	4	4	5	24	21	24	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292074	4	25370335	CA	C	480	PASS	ZCCHC4	CCDS43218.1	r.?	-	-	Del	intronic	D	25370335	25370342	1	21	429.036	-	-	6	1	1	ZCCHC4|CCDS43218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC4|CCDS43218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	6	3	7	24	27	24	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292138	4	25491399	TA	T	540	PASS	-	-	-	-	-	Del	-	D	25491399	25491408	1	28	485.374	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	6	5	8	27	32	27	32	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292250	4	25708023	CT	C	360	PASS	ENSG00000237795	ENST00000438783	r.?	-	-	Del	intronic	D	25708023	25708032	1	12	323.583	-	-	8	1	1	ENSG00000237795|ENST00000438783|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237795|ENST00000438783|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	5	2	5	17	30	17	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292290	4	25804212	CT	C	300	PASS	SEL1L3	CCDS47037.1	r.?	-	-	Del	intronic	D	25804212	25804222	1	12	269.652	-	-	9	1	1	SEL1L3|CCDS47037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEL1L3|CCDS47037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	4	3	24	24	24	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292321	4	25941492	TA	T	360	PASS	-	-	-	-	-	Del	-	D	25941492	25941502	1	15	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	2	4	4	5	29	31	29	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292399	4	26186458	CT	C	329	PASS	RBPJ	ENST00000512351	r.?	-	-	Del	intronic	D	26186458	26186466	1	16	320.573	-	-	7	1	1	RBPJ|ENST00000512351|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RBPJ|ENST00000512351|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	3	3	5	5	23	24	23	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292470	4	26421917	GT	G	300	PASS	RBPJ	CCDS33969.1	r.?	-	-	Del	intronic	D	26421917	26421925	1	10	269.05	-	-	7	1	1	RBPJ|CCDS33969.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBPJ|CCDS33969.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	4	1	4	2	25	3	25	3	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292687	4	27166425	CGT	C	360	PASS	-	-	-	-	-	Del	-	D	27166425	27166442	2	15	323.583	-	-	8	1	-	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	2	4	2	25	20	25	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292786	4	27597755	AGT	A	360	PASS	-	-	-	-	-	Del	-	D	27597755	27597771	2	16	323.583	-	-	7	1	-	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	7	4	29	32	29	32	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292788	4	27604710	CA	C	540	PASS	-	-	-	-	-	Del	-	D	27604710	27604720	1	28	485.374	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	6	3	7	20	24	20	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292797	4	27639674	TA	T	360	PASS	-	-	-	-	-	Del	-	D	27639674	27639684	1	12	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	1	5	2	23	20	23	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760292985	4	28121993	TCA	T	660	PASS	-	-	-	-	-	Del	-	D	28121993	28121998	2	36	592.633	-	-	2	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	8	3	8	3	31	20	31	20	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293089	4	28478663	CT	C	300	PASS	-	-	-	-	-	Del	-	D	28478663	28478673	1	6	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	0	5	1	5	2	22	2	22	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293122	4	28573115	GA	G	360	PASS	-	-	-	-	-	Del	-	D	28573115	28573123	1	15	323.583	-	-	7	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	4	2	7	14	34	14	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293140	4	28638798	TA	T	300	PASS	-	-	-	-	-	Del	-	D	28638798	28638808	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	3	3	24	20	24	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293448	4	29608002	CA	C	300	PASS	-	-	-	-	-	Del	-	D	29608002	29608012	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	1	4	1	22	23	22	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293633	4	30220643	A	AT	300	PASS	ENSG00000237496	ENST00000424014	r.?	-	-	Ins	intronic	I	30220643	30220646	1	12	266.642	-	-	2	1	1	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	3	5	19	27	19	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293645	4	30284362	CT	C	540	PASS	ENSG00000237496	ENST00000424014	r.?	-	-	Del	intronic	D	30284362	30284372	1	24	485.374	-	-	9	1	1	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	7	2	9	2	33	20	33	20	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293740	4	30791225	GT	G	360	PASS	PCDH7	CCDS43220.1	r.?	-	-	Del	intronic	D	30791225	30791235	1	16	323.583	-	-	9	1	1	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	3	4	25	30	25	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293751	4	30822584	T	TA	480	PASS	PCDH7	CCDS43220.1	r.?	-	-	Ins	intronic	I	30822584	30822593	1	25	426.627	-	-	8	1	1	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	4	4	4	6	30	26	30	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293779	4	30900646	GA	G	600	PASS	PCDH7	CCDS43220.1	r.?	-	-	Del	intronic	D	30900646	30900656	1	36	539.305	-	-	9	1	1	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	5	5	7	25	28	25	28	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293817	4	31005464	AG	A	300	PASS	PCDH7	CCDS43220.1	r.?	-	-	Del	intronic	D	31005464	31005467	1	12	269.652	-	-	2	1	1	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	6	3	34	19	34	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760293928	4	31315995	TA	T	480	PASS	-	-	-	-	-	Del	-	D	31315995	31316004	1	24	431.444	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	3	5	3	25	24	25	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294002	4	31532516	GT	G	360	PASS	-	-	-	-	-	Del	-	D	31532516	31532524	1	15	319.971	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	6	4	25	23	25	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294010	4	31540216	CT	C	360	PASS	-	-	-	-	-	Del	-	D	31540216	31540226	1	15	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	10	2	30	5	30	5	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294128	4	31948754	AT	A	569	PASS	-	-	-	-	-	Del	-	D	31948754	31948762	1	35	539.305	-	-	7	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	6	4	8	7	26	31	26	31	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294358	4	32894812	GA	G	269	PASS	-	-	-	-	-	Del	-	D	32894812	32894822	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	4	1	6	11	23	11	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294375	4	32945164	CA	C	277	PASS	-	-	-	-	-	Del	-	D	32945164	32945169	1	12	268.448	-	-	4	1	-	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	4	3	22	23	22	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294483	4	33318134	TA	T	600	PASS	-	-	-	-	-	Del	-	D	33318134	33318140	1	36	539.305	-	-	5	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	5	5	6	35	27	35	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294551	4	33754934	CA	C	300	PASS	-	-	-	-	-	Del	-	D	33754934	33754940	1	12	269.652	-	-	5	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	2	3	23	26	23	26	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294560	4	33810142	CT	C	480	PASS	-	-	-	-	-	Del	-	D	33810142	33810151	1	25	427.832	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	4	4	4	18	19	18	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760294562	4	33830614	CT	C	480	PASS	-	-	-	-	-	Del	-	D	33830614	33830624	1	25	430.842	-	-	9	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	4	4	4	7	30	24	30	24	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295073	4	35623085	GT	G	360	PASS	-	-	-	-	-	Del	-	D	35623085	35623094	1	16	322.981	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	3	3	3	28	26	28	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295103	4	35698015	AG	A	298	PASS	-	-	-	-	-	Del	-	D	35698015	35698017	1	16	323.583	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	4	3	24	14	24	14	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295115	4	35727516	TC	T	420	PASS	-	-	-	-	-	Del	-	D	35727516	35727524	1	18	373.901	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	5	5	22	37	22	37	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295193	4	35988667	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	35988667	35988676	1	10	266.642	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	17	15	0	0	./.	4	1	4	4	34	23	34	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295358	4	36508707	CT	C	629	PASS	-	-	-	-	-	Del	-	D	36508707	36508717	1	36	590.827	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	8	5	10	21	33	21	33	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295723	4	37584441	TG	T	300	PASS	C4orf19	CCDS3442.1	r.?	-	-	Del	upstream	D	37584441	37584449	1	10	269.05	-	-	7	1	1	C4orf19|CCDS3442.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C4orf19|CCDS3442.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	3	4	17	28	17	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295782	4	37728827	CA	C	360	PASS	-	-	-	-	-	Del	-	D	37728827	37728835	1	15	323.583	-	-	7	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	4	4	5	22	28	22	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295899	4	38027834	TA	T	480	PASS	TBC1D1	CCDS33972.1	r.?	-	-	Del	intronic	D	38027834	38027843	1	24	431.444	-	-	8	1	1	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	3	5	5	5	26	27	26	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760295901	4	38044823	GT	G	269	PASS	TBC1D1	CCDS33972.1	r.?	-	-	Del	intronic	D	38044823	38044833	1	12	264.234	-	-	9	1	1	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	2	4	4	21	24	21	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296026	4	38318453	TA	T	300	PASS	-	-	-	-	-	Del	-	D	38318453	38318462	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	1	5	2	20	21	20	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296406	4	39169993	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	39169993	39170000	1	12	265.438	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	3	2	3	14	33	14	33	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296409	4	39176399	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	39176399	39176407	1	20	373.299	-	-	7	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	3	4	4	5	24	35	24	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296492	4	39405360	GA	G	480	PASS	KLB	CCDS3451.1	r.?	-	-	Del	upstream	D	39405360	39405370	1	21	430.24	-	-	9	1	1	KLB|CCDS3451.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KLB|CCDS3451.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	17	6	17	0	0	./.	2	6	5	7	17	31	17	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296747	4	39798674	CT	C	329	PASS	-	-	-	-	-	Del	-	D	39798674	39798683	1	16	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	3	5	4	23	31	23	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296834	4	39955810	AC	A	420	PASS	PDS5A	CCDS47045.1	r.?	-	-	Del	intronic	D	39955810	39955812	1	20	376.309	-	-	1	1	1	PDS5A|CCDS47045.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AC098591.3|ENST00000499303|r.1896delG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	3	8	39	35	39	35	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296911	4	40077344	CT	C	300	PASS	N4BP2	CCDS3457.1	r.?	-	-	Del	intronic	D	40077344	40077353	1	12	269.652	-	-	8	1	1	N4BP2|CCDS3457.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	N4BP2|CCDS3457.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	3	6	23	20	23	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296930	4	40125012	CT	C	540	PASS	N4BP2	CCDS3457.1	r.?	-	-	Del	intronic	D	40125012	40125022	1	28	485.374	-	-	9	1	1	N4BP2|CCDS3457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	N4BP2|CCDS3457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	6	4	7	20	31	20	31	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760296954	4	40195808	AT	A	300	PASS	RHOH	CCDS3458.1	r.?	-	-	Del	upstream	D	40195808	40195813	1	12	269.652	-	-	4	1	1	RHOH|CCDS3458.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RHOH|ENST00000505618|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	21	7	21	0	0	./.	2	3	2	4	5	9	5	9	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297030	4	40368970	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	40368970	40368977	1	10	266.642	-	-	6	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	1	4	1	6	7	28	7	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297076	4	40460771	GTT	G	300	PASS	RBM47	CCDS3460.1	r.?	-	-	Del	intronic	D	40460771	40460781	2	12	269.05	-	-	9	1	1	RBM47|CCDS3460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RBM47|CCDS3460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	5	2	19	14	19	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297096	4	40507213	GA	G	269	PASS	RBM47	CCDS3460.1	r.?	-	-	Del	intronic	D	40507213	40507222	1	12	269.652	-	-	8	1	1	RBM47|CCDS3460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RBM47|CCDS3460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	3	3	23	27	23	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297294	4	40889563	GA	G	420	PASS	APBB2	CCDS3837.1	r.?	-	-	Del	intronic	D	40889563	40889573	1	18	376.911	-	-	9	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	2	5	5	39	24	39	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297354	4	41050864	AT	A	294	PASS	APBB2	CCDS3837.1	r.?	-	-	Del	intronic	D	41050864	41050872	1	12	269.05	-	-	7	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	4	2	18	16	18	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297385	4	41141605	T	TA	300	PASS	APBB2	CCDS3837.1	r.?	-	-	Ins	intronic	I	41141605	41141614	1	12	266.642	-	-	8	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	2	3	2	4	17	30	17	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297461	4	41302033	AT	A	360	PASS	-	-	-	-	-	Del	-	D	41302033	41302043	1	15	322.981	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	6	3	28	27	28	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297483	4	41340046	CT	C	540	PASS	-	-	-	-	-	Del	-	D	41340046	41340056	1	30	485.374	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	4	5	6	5	27	32	27	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297563	4	41626170	CT	C	300	PASS	LIMCH1	CCDS33977.1	r.?	-	-	Del	intronic	D	41626170	41626179	1	12	268.448	-	-	8	1	1	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	4	2	21	12	21	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297728	4	42137815	CA	C	420	PASS	BEND4	CCDS47048.1	r.?	-	-	Del	intronic	D	42137815	42137824	1	20	377.513	-	-	8	1	1	BEND4|CCDS47048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BEND4|CCDS47048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	3	6	6	25	27	25	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297882	4	42525884	CT	C	300	PASS	ATP8A1	CCDS3466.1	r.?	-	-	Del	intronic	D	42525884	42525894	1	10	269.652	-	-	9	1	1	ATP8A1|CCDS3466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A1|CCDS3466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	4	3	22	18	22	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297907	4	42620869	AT	A	420	PASS	ATP8A1	CCDS3466.1	r.?	-	-	Del	intronic	D	42620869	42620878	1	14	377.513	-	-	8	1	1	ATP8A1|CCDS3466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP8A1|CCDS3466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	1	6	1	9	26	23	26	23	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760297934	4	42752733	CT	C	480	PASS	-	-	-	-	-	Del	-	D	42752733	42752742	1	21	431.444	-	-	8	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	6	2	7	2	34	14	34	14	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298100	4	43387953	TA	T	360	PASS	-	-	-	-	-	Del	-	D	43387953	43387960	1	16	323.583	-	-	6	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	5	4	24	28	24	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298166	4	43704813	AT	A	420	PASS	-	-	-	-	-	Del	-	D	43704813	43704823	1	14	376.911	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	6	1	7	2	26	26	26	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298250	4	44043527	C	CAG	360	PASS	-	-	-	-	-	Ins	-	I	44043527	44043539	2	16	313.95	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	3	3	22	28	22	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298255	4	44085435	CT	C	420	PASS	-	-	-	-	-	Del	-	D	44085435	44085444	1	20	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	4	4	6	28	21	28	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298613	4	45205828	CT	C	300	PASS	-	-	-	-	-	Del	-	D	45205828	45205838	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	2	3	11	11	11	11	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298659	4	45501193	GT	G	420	PASS	-	-	-	-	-	Del	-	D	45501193	45501203	1	18	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	2	5	5	6	17	33	17	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298729	4	45833913	ACTT	A	329	PASS	-	-	-	-	-	Del	-	D	45833913	45833923	3	12	323.583	-	-	3	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	1	5	1	5	16	24	16	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298751	4	45964028	ACTT	A	300	PASS	-	-	-	-	-	Del	-	D	45964028	45964034	3	12	269.652	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	3	24	28	24	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298845	4	46399830	AT	A	480	PASS	GABRA2	ENST00000510861	r.?	-	-	Del	intronic	D	46399830	46399839	1	21	431.444	-	-	8	1	1	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	6	2	8	5	33	25	33	25	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298855	4	46484541	CT	C	600	PASS	-	-	-	-	-	Del	-	D	46484541	46484551	1	35	539.305	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	6	4	7	22	30	22	30	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760298898	4	46715804	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	46715804	46715814	1	12	266.04	-	-	9	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	3	2	6	3	39	20	39	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760299182	4	47706239	GA	G	540	PASS	CORIN	CCDS3477.1	r.?	-	-	Del	intronic	D	47706239	47706249	1	30	484.17	-	-	9	1	1	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	4	8	4	27	33	27	33	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760299224	4	47885271	CA	C	480	PASS	NFXL1	CCDS3478.2	r.?	-	-	Del	intronic	D	47885271	47885281	1	25	429.638	-	-	9	1	1	NFXL1|CCDS3478.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFXL1|CCDS3478.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	4	4	5	7	27	32	27	32	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760299612	4	49016621	CT	C	420	PASS	CWH43	CCDS3486.1	r.?	-	-	Del	intronic	D	49016621	49016631	1	18	377.513	-	-	9	1	1	CWH43|CCDS3486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CWH43|CCDS3486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	2	6	4	35	19	35	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760300762	4	53558405	CA	C	360	PASS	-	-	-	-	-	Del	-	D	53558405	53558411	1	12	323.583	-	-	5	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	5	1	6	2	33	13	33	13	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760300849	4	53959022	C	CA	420	PASS	SCFD2	CCDS33984.1	r.?	-	-	Ins	intronic	I	53959022	53959030	1	20	372.095	-	-	7	1	1	SCFD2|CCDS33984.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCFD2|CCDS33984.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	12	0	0	./.	4	3	5	5	25	21	25	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760300899	4	54164856	AC	A	540	PASS	SCFD2	CCDS33984.1	r.?	-	-	Del	intronic	D	54164856	54164863	1	24	484.17	-	-	6	1	1	SCFD2|CCDS33984.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCFD2|CCDS33984.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	2	7	2	41	18	41	18	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301021	4	54457089	GA	G	360	PASS	LNX1	CCDS47057.1	r.?	-	-	Del	intronic	D	54457089	54457099	1	15	323.583	-	-	9	1	1	LNX1|CCDS47057.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LNX1|CCDS47057.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	6	6	19	46	19	46	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301070	4	54625330	GT	G	300	PASS	AC110792.1	ENST00000511394	r.?	-	-	Del	intronic	D	54625330	54625339	1	10	269.652	-	-	8	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	4	1	4	1	21	6	21	6	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301111	4	54694907	GT	G	486	PASS	AC110792.1	ENST00000511394	r.?	-	-	Del	intronic	D	54694907	54694915	1	24	485.374	-	-	7	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	7	2	7	4	34	19	34	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301123	4	54739146	TA	T	420	PASS	AC110792.1	ENST00000511394	r.?	-	-	Del	intronic	D	54739146	54739156	1	18	375.707	-	-	9	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	2	6	2	25	26	25	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301167	4	54896226	TA	T	720	PASS	CHIC2	CCDS3493.1	r.?	-	-	Del	intronic	D	54896226	54896236	1	40	642.951	-	-	9	1	1	CHIC2|CCDS3493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHIC2|CCDS3493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	3	9	3	11	7	26	7	26	3	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301211	4	55019308	TG	T	300	PASS	FIP1L1	ENST00000507166	r.?	-	-	Del	intronic	D	55019308	55019313	1	10	268.448	-	-	4	1	1	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	1	4	2	4	25	17	25	17	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301299	4	55211634	TA	T	360	PASS	-	-	-	-	-	Del	-	D	55211634	55211643	1	12	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	1	6	3	34	31	34	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301542	4	56165621	CA	C	300	PASS	-	-	-	-	-	Del	-	D	56165621	56165631	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	2	4	2	29	38	29	38	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301900	4	57171580	AC	A	420	PASS	ENSG00000109265	CCDS43230.1	r.?	-	-	Del	intronic	D	57171580	57171586	1	20	377.513	-	-	5	1	1	ENSG00000109265|CCDS43230.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000109265|CCDS43230.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	4	4	5	27	25	27	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760301917	4	57203238	GT	G	420	PASS	AASDH	CCDS3504.1	r.?	-	-	Del	downstream	D	57203238	57203247	1	14	377.513	-	-	8	1	1	AASDH|CCDS3504.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AASDH|CCDS3504.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	8	5	8	0	0	./.	1	6	1	6	16	32	16	32	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760302065	4	57643634	CT	C	420	PASS	-	-	-	-	-	Del	-	D	57643634	57643644	1	14	375.105	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	1	8	5	29	22	29	22	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760302213	4	57911037	CT	C	420	PASS	IGFBP7	CCDS3512.1	r.?	-	-	Del	intronic	D	57911037	57911045	1	18	377.513	-	-	7	1	1	IGFBP7|CCDS3512.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGFBP7|CCDS3512.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	5	2	8	21	20	21	20	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760302812	4	59716267	CT	C	275	PASS	-	-	-	-	-	Del	-	D	59716267	59716276	1	15	319.971	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	4	2	22	11	22	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303120	4	60818866	TA	T	300	PASS	-	-	-	-	-	Del	-	D	60818866	60818874	1	10	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	5	2	13	22	13	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303165	4	60999356	TA	T	300	PASS	-	-	-	-	-	Del	-	D	60999356	60999366	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	1	5	1	22	12	22	12	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303199	4	61121487	TTA	T	300	PASS	-	-	-	-	-	Del	-	D	61121487	61121491	2	12	269.652	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	4	4	17	22	17	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303258	4	61281565	CT	C	318	PASS	-	-	-	-	-	Del	-	D	61281565	61281573	1	24	431.444	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	5	3	5	3	24	22	24	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303454	4	61738351	GCT	G	420	PASS	-	-	-	-	-	Del	-	D	61738351	61738361	2	20	377.513	-	-	4	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	3	4	25	34	25	34	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303519	4	61943182	CA	C	360	PASS	-	-	-	-	-	Del	-	D	61943182	61943192	1	16	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	3	3	5	29	21	29	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303602	4	62190107	TA	T	300	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62190107	62190117	1	10	269.652	-	-	9	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	11	24	11	0	0	./.	4	1	4	1	17	28	17	28	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303661	4	62373346	T	TG	360	PASS	LPHN3	ENST00000512091	r.?	-	-	Ins	intronic	I	62373346	62373355	1	15	319.971	-	-	8	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	3	5	18	25	18	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760303985	4	63575513	TATAG	T	269	PASS	-	-	-	-	-	Del	-	D	63575513	63575522	4	10	269.652	-	-	2	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	1	4	5	4	19	28	19	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760304124	4	64131054	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	64131054	64131061	1	27	532.08	-	-	6	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	8	2	8	28	32	28	32	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760304188	4	64385987	CA	C	300	PASS	-	-	-	-	-	Del	-	D	64385987	64385995	1	12	269.05	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	3	4	16	15	16	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760304381	4	65063020	GA	G	360	PASS	-	-	-	-	-	Del	-	D	65063020	65063029	1	12	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	5	1	7	8	30	8	30	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760304705	4	66086529	GA	G	300	PASS	-	-	-	-	-	Del	-	D	66086529	66086538	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	1	4	1	5	22	24	22	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760304766	4	66343007	AT	A	300	PASS	EPHA5	CCDS3513.1	r.?	-	-	Del	intronic	D	66343007	66343015	1	12	269.652	-	-	7	1	1	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	2	32	5	32	5	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760304821	4	66492449	AT	A	300	PASS	EPHA5	CCDS3513.1	r.?	-	-	Del	intronic	D	66492449	66492457	1	10	269.652	-	-	7	1	1	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	1	4	2	5	9	21	9	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760305247	4	67815859	GA	G	480	PASS	-	-	-	-	-	Del	-	D	67815859	67815865	1	21	431.444	-	-	5	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	2	6	4	33	29	33	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760305252	4	67845145	CA	C	540	PASS	-	-	-	-	-	Del	-	D	67845145	67845151	1	24	485.374	-	-	5	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	7	4	10	24	28	24	28	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760305430	4	68391281	TA	T	480	PASS	CENPC1	CCDS47063.1	r.?	-	-	Del	intronic	D	68391281	68391290	1	24	430.842	-	-	8	1	1	CENPC1|CCDS47063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPC1|CCDS47063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	3	5	4	5	27	32	27	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760305663	4	69187710	TA	T	360	PASS	YTHDC1	CCDS33992.1	r.?	-	-	Del	intronic	D	69187710	69187717	1	16	323.583	-	-	6	1	1	YTHDC1|CCDS33992.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YTHDC1|CCDS33992.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	3	3	4	3	22	23	22	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760305801	4	69710554	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	69710554	69710557	1	10	266.04	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	1	6	23	31	23	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306123	4	70648292	CA	C	420	PASS	SULT1B1	ENST00000512870	r.?	-	-	Del	intronic	D	70648292	70648301	1	18	373.299	-	-	8	1	1	SULT1B1|ENST00000512870|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SULT1B1|ENST00000512870|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	5	2	5	3	34	23	34	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306150	4	70780759	TA	T	300	PASS	-	-	-	-	-	Del	-	D	70780759	70780767	1	12	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	3	2	4	3	24	27	24	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306297	4	71219692	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	71219692	71219701	1	12	312.746	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	1	5	1	5	4	25	4	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306562	4	71934454	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	71934454	71934462	1	12	266.642	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	4	4	24	25	24	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306615	4	72155801	GA	G	360	PASS	SLC4A4	CCDS47071.1	r.?	-	-	Del	intronic	D	72155801	72155810	1	16	323.583	-	-	8	1	1	SLC4A4|CCDS47071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC4A4|CCDS47071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	3	4	3	27	19	27	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306667	4	72386555	CT	C	300	PASS	SLC4A4	CCDS3549.1	r.?	-	-	Del	intronic	D	72386555	72386564	1	12	269.652	-	-	8	1	1	SLC4A4|CCDS3549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC4A4|CCDS3549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	2	3	4	3	27	29	27	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306732	4	72558132	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	72558132	72558141	1	18	477.548	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	8	1	9	2	29	15	29	15	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306813	4	72821085	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	72821085	72821092	1	28	476.344	-	-	6	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	6	5	7	32	34	32	34	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306892	4	73006613	CT	C	300	PASS	NPFFR2	CCDS3551.1	r.?	-	-	Del	intronic	D	73006613	73006621	1	10	269.652	-	-	7	1	1	NPFFR2|CCDS3551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPFFR2|CCDS3551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	6	1	28	18	28	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760306907	4	73130276	AT	A	300	PASS	-	-	-	-	-	Del	-	D	73130276	73130283	1	10	269.652	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	7	2	28	10	28	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307012	4	73586676	GA	G	480	PASS	-	-	-	-	-	Del	-	D	73586676	73586686	1	21	431.444	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	2	6	2	23	28	23	28	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307131	4	73906242	CT	C	300	PASS	-	-	-	-	-	Del	-	D	73906242	73906252	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	1	4	1	5	7	24	7	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307165	4	74055531	TA	T	300	PASS	ANKRD17	CCDS34004.1	r.?	-	-	Del	intronic	D	74055531	74055541	1	12	269.652	-	-	9	1	1	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	4	22	20	22	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307252	4	74433314	GTC	G	540	PASS	RASSF6	CCDS3559.1	r.?	-	-	Del	downstream	D	74433314	74433330	2	30	482.966	-	-	7	1	1	RASSF6|CCDS3559.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RASSF6|CCDS3559.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	9	5	9	0	0	./.	4	5	4	5	24	34	24	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307359	4	74894225	T	TTG	300	PASS	-	-	-	-	-	Ins	-	I	74894225	74894241	2	6	263.632	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	5	0	6	0	31	3	31	3	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307523	4	75652184	CA	C	300	PASS	-	-	-	-	-	Del	-	D	75652184	75652192	1	12	269.05	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	4	3	17	31	17	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307690	4	76256051	CT	C	269	PASS	-	-	-	-	-	Del	-	D	76256051	76256061	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	5	4	29	20	29	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307718	4	76396663	AT	A	360	PASS	-	-	-	-	-	Del	-	D	76396663	76396673	1	15	322.379	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	2	6	19	18	19	18	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760307819	4	76689165	CT	C	269	PASS	USO1	ENST00000264904	r.?	-	-	Del	intronic	D	76689165	76689175	1	10	269.652	-	-	9	1	1	USO1|ENST00000264904|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USO1|ENST00000264904|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	1	4	3	4	24	23	24	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760308223	4	77691265	TAGG	T	416	PASS	SHROOM3	CCDS3579.2	r.?	-	-	Del	intronic	D	77691265	77691271	3	28	483.568	-	-	1	1	1	SHROOM3|CCDS3579.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHROOM3|CCDS3579.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	3	6	4	7	19	33	19	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760308348	4	78005060	TG	T	540	PASS	-	-	-	-	-	Del	-	D	78005060	78005067	1	28	478.15	-	-	6	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	3	9	6	35	36	35	36	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760308529	4	78742191	ATC	A	480	PASS	CNOT6L	CCDS47082.1	r.?	-	-	Del	upstream	D	78742191	78742197	2	16	431.444	-	-	2	1	1	CNOT6L|CCDS47082.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CNOT6L|CCDS47082.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	10	8	10	0	0	./.	1	7	2	8	32	38	32	38	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760308645	4	79072392	CT	C	300	PASS	FRAS1	ENST00000264895	r.?	-	-	Del	intronic	D	79072392	79072402	1	12	269.652	-	-	9	1	1	FRAS1|ENST00000264895|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRAS1|ENST00000264895|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	2	3	2	3	27	17	27	17	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309093	4	80593729	CA	C	300	PASS	-	-	-	-	-	Del	-	D	80593729	80593738	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	2	4	4	33	24	33	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309099	4	80608611	AC	A	420	PASS	-	-	-	-	-	Del	-	D	80608611	80608618	1	18	375.105	-	-	6	1	1	-	-	./.	0	0	0	0	19	3	19	3	0	0	./.	2	5	2	5	21	25	21	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309202	4	80868691	C	CA	420	PASS	ANTXR2	CCDS47085.1	r.?	-	-	Ins	intronic	I	80868691	80868697	1	18	373.299	-	-	5	1	1	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	5	2	7	20	24	20	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309231	4	80934244	GA	G	360	PASS	ANTXR2	CCDS47085.1	r.?	-	-	Del	intronic	D	80934244	80934253	1	15	323.583	-	-	8	1	1	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	4	6	4	31	29	31	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309345	4	81450387	GT	G	360	PASS	C4orf22	CCDS3587.1	r.?	-	-	Del	intronic	D	81450387	81450397	1	12	323.583	-	-	9	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	1	5	1	9	12	28	12	28	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309388	4	81727700	TACAA	T	360	PASS	C4orf22	CCDS3587.1	r.?	-	-	Del	intronic	D	81727700	81727711	4	15	322.981	-	-	2	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	4	2	7	24	19	24	19	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309397	4	81815386	TA	T	300	PASS	C4orf22	CCDS3587.1	r.?	-	-	Del	intronic	D	81815386	81815396	1	12	269.05	-	-	9	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	3	23	20	23	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309473	4	82097551	TA	T	360	PASS	PRKG2	CCDS3589.1	r.?	-	-	Del	intronic	D	82097551	82097561	1	16	322.379	-	-	9	1	1	PRKG2|CCDS3589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG2|CCDS3589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	3	4	4	26	14	26	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309515	4	82234849	GT	G	300	PASS	-	-	-	-	-	Del	-	D	82234849	82234854	1	10	269.652	-	-	4	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	4	1	6	1	30	25	30	25	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760309727	4	82970192	CT	C	360	PASS	-	-	-	-	-	Del	-	D	82970192	82970200	1	12	323.583	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	1	7	2	24	10	24	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310057	4	83829529	CA	C	300	PASS	THAP9	CCDS3598.1	r.?	-	-	Del	intronic	D	83829529	83829537	1	6	269.652	-	-	7	1	1	THAP9|CCDS3598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THAP9|CCDS3598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	0	5	0	5	17	18	17	18	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310068	4	83857751	TA	T	300	PASS	LIN54	CCDS3599.1	r.?	-	-	Del	intronic	D	83857751	83857757	1	6	269.652	-	-	5	1	1	LIN54|CCDS3599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN54|CCDS3599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	0	5	0	5	0	18	0	18	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310208	4	84096301	GT	G	420	PASS	-	-	-	-	-	Del	-	D	84096301	84096310	1	18	375.105	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	2	6	2	26	20	26	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310316	4	84395710	CA	C	480	PASS	FAM175A	CCDS3605.2	r.?	-	-	Del	intronic	D	84395710	84395719	1	21	431.444	-	-	8	1	1	FAM175A|CCDS3605.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM175A|CCDS3605.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	6	2	7	3	29	14	29	14	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310474	4	84862101	GT	G	420	PASS	-	-	-	-	-	Del	-	D	84862101	84862110	1	20	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	4	3	4	17	21	17	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310599	4	85413005	GA	G	300	PASS	NKX6-1	CCDS3607.1	r.?	-	-	Del	downstream	D	85413005	85413015	1	6	269.652	-	-	9	1	1	NKX6-1|CCDS3607.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	NKX6-1|CCDS3607.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	4	13	4	13	0	0	./.	0	5	1	5	6	15	6	15	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760310665	4	85645298	T	TA	300	PASS	WDFY3	CCDS3609.1	r.?	-	-	Ins	intronic	I	85645298	85645306	1	10	266.642	-	-	7	1	1	WDFY3|CCDS3609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDFY3|CCDS3609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	12	0	0	./.	4	1	6	1	31	9	31	9	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311057	4	87088056	CA	C	300	PASS	MAPK10	CCDS3612.1	r.?	-	-	Del	intronic	D	87088056	87088066	1	10	269.652	-	-	9	1	1	MAPK10|CCDS3612.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAPK10|CCDS3612.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	1	4	2	4	19	25	19	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311130	4	87343278	A	AT	360	PASS	MAPK10	CCDS43247.1	r.?	-	-	Ins	intronic	I	87343278	87343287	1	15	318.164	-	-	8	1	1	MAPK10|CCDS43247.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MAPK10|CCDS43247.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	11	13	0	0	./.	2	4	4	6	25	24	25	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311187	4	87677479	TA	T	420	PASS	PTPN13	CCDS47093.1	r.?	-	-	Del	intronic	D	87677479	87677486	1	20	377.513	-	-	6	1	1	PTPN13|CCDS47093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN13|CCDS47093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	3	4	3	5	13	22	13	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311308	4	87964163	G	GA	389	PASS	AFF1	CCDS3616.1	r.?	-	-	Ins	intronic	I	87964163	87964168	1	20	369.085	-	-	4	1	1	AFF1|CCDS3616.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AFF1|CCDS3616.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	4	3	4	21	21	21	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311468	4	88427442	TG	T	420	PASS	SPARCL1	CCDS3622.1	r.?	-	-	Del	intronic	D	88427442	88427447	1	18	377.513	-	-	4	1	1	SPARCL1|CCDS3622.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPARCL1|CCDS3622.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	5	2	5	2	32	25	32	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311642	4	88896584	CT	C	360	PASS	SPP1	CCDS3626.1	r.?	-	-	Del	upstream	D	88896584	88896590	1	15	323.583	-	-	5	1	1	SPP1|CCDS3626.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SPP1|CCDS3626.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	4	2	20	7	20	7	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760311785	4	89281309	AT	A	341	PASS	-	-	-	-	-	Del	-	D	89281309	89281317	1	18	375.105	-	-	7	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	5	2	5	2	28	27	28	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312208	4	91149907	C	CA	377	PASS	FAM190A	ENST00000509176	r.?	-	-	Ins	intronic	I	91149907	91149910	1	25	424.821	-	-	2	1	1	FAM190A|ENST00000509176|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM190A|ENST00000509176|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	4	4	4	30	33	31	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312223	4	91363236	GT	G	480	PASS	FAM190A	CCDS47100.1	r.?	-	-	Del	intronic	D	91363236	91363246	1	25	430.842	-	-	9	1	1	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	4	4	7	5	26	28	26	28	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312298	4	91685390	TA	T	420	PASS	FAM190A	CCDS47100.1	r.?	-	-	Del	intronic	D	91685390	91685399	1	20	377.513	-	-	8	1	1	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	4	3	4	3	14	16	14	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312329	4	91765837	CT	C	540	PASS	FAM190A	CCDS47099.1	r.?	-	-	Del	intronic	D	91765837	91765847	1	30	485.374	-	-	9	1	1	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	5	4	6	4	26	21	26	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312390	4	92002253	CA	C	384	PASS	FAM190A	CCDS47099.1	r.?	-	-	Del	intronic	D	92002253	92002261	1	16	431.444	-	-	7	1	1	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	1	7	1	8	22	30	22	30	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312509	4	92396163	CT	C	300	PASS	FAM190A	CCDS47099.1	r.?	-	-	Del	intronic	D	92396163	92396171	1	12	269.652	-	-	7	1	1	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	4	3	19	3	19	3	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312669	4	93393986	CTG	C	540	PASS	GRID2	CCDS3637.1	r.?	-	-	Del	intronic	D	93393986	93393990	2	28	485.374	-	-	1	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	3	6	4	6	26	26	26	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312842	4	94583619	CT	C	420	PASS	GRID2	CCDS3637.1	r.?	-	-	Del	intronic	D	94583619	94583628	1	20	377.513	-	-	8	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	5	28	24	28	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760312923	4	94944372	TA	T	300	PASS	-	-	-	-	-	Del	-	D	94944372	94944379	1	12	269.652	-	-	6	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	3	3	24	7	24	7	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313088	4	95559749	GT	G	360	PASS	PDLIM5	CCDS3641.1	r.?	-	-	Del	intronic	D	95559749	95559755	1	16	323.583	-	-	5	1	-	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	3	3	3	8	9	8	9	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313296	4	96186440	CA	C	300	PASS	UNC5C	CCDS3643.1	r.?	-	-	Del	intronic	D	96186440	96186449	1	10	269.652	-	-	8	1	1	UNC5C|CCDS3643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5C|CCDS3643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	2	5	12	27	12	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313559	4	97154368	C	CAG	300	PASS	-	-	-	-	-	Ins	-	I	97154368	97154378	2	12	263.632	-	-	4	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	3	4	21	17	21	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313561	4	97159783	CT	C	420	PASS	-	-	-	-	-	Del	-	D	97159783	97159792	1	20	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	4	4	17	21	17	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313615	4	97444831	GT	G	300	PASS	-	-	-	-	-	Del	-	D	97444831	97444841	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	5	1	24	16	24	16	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313704	4	97836793	CA	C	360	PASS	-	-	-	-	-	Del	-	D	97836793	97836803	1	16	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	3	3	16	18	16	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313760	4	98506657	TA	T	360	PASS	C4orf37	CCDS3645.1	r.?	-	-	Del	intronic	D	98506657	98506666	1	12	323.583	-	-	8	1	1	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	1	6	4	20	19	20	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313809	4	98752714	CA	C	300	PASS	C4orf37	CCDS3645.1	r.?	-	-	Del	intronic	D	98752714	98752721	1	10	269.652	-	-	6	1	1	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	1	4	4	5	32	26	32	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313860	4	99049890	G	GT	300	PASS	C4orf37	CCDS3645.1	r.?	-	-	Ins	intronic	I	99049890	99049899	1	6	266.642	-	-	8	1	1	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	0	5	0	14	20	14	20	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313867	4	99089716	GA	G	300	PASS	-	-	-	-	-	Del	-	D	99089716	99089726	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	1	7	3	21	27	21	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313881	4	99211443	CAT	C	389	PASS	RAP1GDS1	CCDS43253.1	r.?	-	-	Del	intronic	D	99211443	99211447	2	20	377.513	-	-	1	1	1	RAP1GDS1|CCDS43253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAP1GDS1|CCDS43253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	4	3	6	15	25	15	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760313900	4	99347890	CA	C	411	PASS	RAP1GDS1	CCDS43253.1	r.?	-	-	Del	intronic	D	99347890	99347899	1	25	431.444	-	-	8	1	1	RAP1GDS1|CCDS43253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAP1GDS1|CCDS43253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	4	4	4	5	23	30	23	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760314255	4	100246411	CAG	C	300	PASS	ADH1B	CCDS34033.1	r.?	-	-	Del	upstream	D	100246411	100246417	2	10	269.652	-	-	2	1	1	ADH1B|CCDS34033.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ADH1B|CCDS34033.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	8	13	8	0	0	./.	4	1	4	1	11	11	11	11	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760314272	4	100275078	GC	G	652	PASS	-	-	-	-	-	Del	-	D	100275078	100275087	1	42	592.031	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	5	6	5	7	30	29	30	29	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760314803	4	102606966	TG	T	420	PASS	BANK1	ENST00000504592	r.?	-	-	Del	intronic	D	102606966	102606973	1	8	377.513	-	-	6	1	1	BANK1|ENST00000504592|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BANK1|ENST00000504592|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	3	11	3	0	0	./.	7	0	7	0	27	1	27	1	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760314881	4	102892555	TA	T	420	PASS	BANK1	CCDS34038.1	r.?	-	-	Del	intronic	D	102892555	102892562	1	14	377.513	-	-	6	1	1	BANK1|CCDS34038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BANK1|CCDS34038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	1	6	1	34	16	34	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315031	4	103524237	AT	A	360	PASS	NFKB1	CCDS3657.1	r.?	-	-	Del	intronic	D	103524237	103524247	1	15	323.583	-	-	9	1	1	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	2	5	2	34	19	34	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315093	4	103715831	A	AAAC	300	PASS	UBE2D3	CCDS3660.1	r.3698_3699insguu	c.?	p.?	Ins	3'UTR variant	I	103715831	103715834	3	12	255.203	-	-	0	1	1	UBE2D3|CCDS3660.1|r.3698_3699insguu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	UBE2D3|CCDS3660.1|r.3698_3699insguu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	0	0	22	25	23	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315107	4	103732845	A	AC	389	PASS	UBE2D3	CCDS3660.1	r.?	-	-	Ins	intronic	I	103732845	103732850	1	20	367.278	-	-	4	1	1	UBE2D3|CCDS3660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2D3|CCDS3660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	4	4	5	29	26	29	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315224	4	104281601	AC	A	300	PASS	-	-	-	-	-	Del	-	D	104281601	104281607	1	12	268.448	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	3	6	22	30	22	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315278	4	104466226	CT	C	300	PASS	-	-	-	-	-	Del	-	D	104466226	104466235	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	2	3	2	5	18	16	18	16	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315309	4	104661464	AT	A	360	PASS	-	-	-	-	-	Del	-	D	104661464	104661470	1	15	319.971	-	-	5	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	4	2	4	5	14	5	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315362	4	104904986	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	104904986	104904990	1	24	426.627	-	-	3	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	3	7	4	20	28	21	28	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315439	4	105379079	AT	A	420	PASS	-	-	-	-	-	Del	-	D	105379079	105379089	1	14	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	1	6	4	34	18	34	18	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315479	4	105521255	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	105521255	105521264	1	12	266.642	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	2	4	2	23	27	25	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315808	4	106919000	C	CA	291	PASS	NPNT	ENST00000505917	r.?	-	-	Ins	intronic	I	106919000	106919010	1	15	308.531	-	-	9	1	1	NPNT|ENST00000505917|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPNT|ENST00000505917|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	2	4	17	25	17	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760315862	4	107312323	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	107312323	107312331	1	6	266.642	-	-	7	1	1	-	-	./.	0	0	0	0	7	11	8	11	0	0	./.	0	5	1	8	20	42	20	43	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316204	4	108695093	GA	G	420	PASS	-	-	-	-	-	Del	-	D	108695093	108695101	1	18	372.095	-	-	7	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	5	2	7	4	32	24	32	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316248	4	108820038	CT	C	360	PASS	SGMS2	CCDS3677.1	r.?	-	-	Del	intronic	D	108820038	108820046	1	12	322.379	-	-	7	1	1	SGMS2|CCDS3677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGMS2|CCDS3677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	5	1	6	2	28	17	28	17	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316254	4	108840843	CA	C	300	PASS	SGMS2	CCDS3677.1	r.?	-	-	Del	downstream	D	108840843	108840853	1	6	269.652	-	-	9	1	1	SGMS2|CCDS3677.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SGMS2|CCDS3677.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	15	18	15	0	0	./.	5	0	7	3	23	24	23	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316329	4	109112174	AT	A	300	PASS	-	-	-	-	-	Del	-	D	109112174	109112184	1	12	267.846	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	3	4	22	28	22	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316395	4	109442928	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	109442928	109442938	1	24	424.821	-	-	9	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	3	5	3	14	9	14	9	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316504	4	109670871	AT	A	300	PASS	AGXT2L1	CCDS3682.1	r.?	-	-	Del	intronic	D	109670871	109670881	1	12	269.652	-	-	9	1	1	AGXT2L1|CCDS3682.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGXT2L1|CCDS3682.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	2	3	3	5	24	18	24	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316799	4	110708020	G	GC	360	PASS	CFI	CCDS34049.1	r.?	-	-	Ins	intronic	I	110708020	110708025	1	15	319.971	-	-	4	1	1	CFI|CCDS34049.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CFI|CCDS34049.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	3	4	26	29	26	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316893	4	110996548	TA	T	300	PASS	ELOVL6	CCDS3690.1	r.?	-	-	Del	intronic	D	110996548	110996557	1	10	269.652	-	-	8	1	1	ELOVL6|CCDS3690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELOVL6|CCDS3690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	1	4	1	7	20	18	20	18	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760316944	4	111125491	CT	C	360	PASS	-	-	-	-	-	Del	-	D	111125491	111125501	1	7	321.777	-	-	9	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	6	0	7	0	26	1	26	1	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760317027	4	111232062	CA	C	300	PASS	-	-	-	-	-	Del	-	D	111232062	111232072	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	27	20	27	20	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760317185	4	111836592	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	111836592	111836595	1	16	319.971	-	-	2	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	3	8	18	31	18	31	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760317601	4	113593583	CA	C	300	PASS	-	-	-	-	-	Del	-	D	113593583	113593592	1	10	266.642	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	1	8	1	32	4	32	4	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760317730	4	113966063	G	GA	300	PASS	ANK2	CCDS3702.1	r.?	-	-	Ins	upstream	I	113966063	113966073	1	12	263.632	-	-	9	1	1	ANK2|CCDS3702.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ANK2|ENST00000506722|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	15	0	0	./.	3	2	3	4	17	33	17	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760317765	4	114086168	CT	C	300	PASS	ANK2	CCDS3702.1	r.?	-	-	Del	intronic	D	114086168	114086178	1	12	269.652	-	-	9	1	1	ANK2|CCDS3702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK2|CCDS3702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	3	13	16	13	16	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760317766	4	114097622	A	AT	300	PASS	ANK2	CCDS3702.1	r.?	-	-	Ins	intronic	I	114097622	114097632	1	6	266.642	-	-	9	1	1	ANK2|CCDS3702.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANK2|CCDS3702.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	15	0	0	./.	0	5	0	7	0	30	0	31	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318158	4	115388126	GAA	G	389	PASS	-	-	-	-	-	Del	-	D	115388126	115388132	2	18	375.707	-	-	5	1	1	-	-	./.	0	0	0	0	10	9	13	11	0	0	./.	5	2	5	2	21	18	21	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318196	4	115442841	CT	C	269	PASS	-	-	-	-	-	Del	-	D	115442841	115442849	1	12	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	3	3	19	26	19	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318252	4	115663051	TA	T	300	PASS	-	-	-	-	-	Del	-	D	115663051	115663060	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	1	4	2	5	13	24	13	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318289	4	115763001	GT	G	360	PASS	NDST4	CCDS3706.1	r.?	-	-	Del	intronic	D	115763001	115763010	1	7	323.583	-	-	8	1	1	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	0	6	1	6	11	33	11	33	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318297	4	115802515	GA	G	300	PASS	NDST4	CCDS3706.1	r.?	-	-	Del	intronic	D	115802515	115802523	1	12	269.652	-	-	7	1	1	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	4	3	16	17	16	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318610	4	117088273	GA	G	360	PASS	-	-	-	-	-	Del	-	D	117088273	117088278	1	15	322.981	-	-	4	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	2	4	20	25	20	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318665	4	117338475	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	117338475	117338485	1	10	266.642	-	-	9	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	1	4	4	4	30	35	30	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318862	4	117992147	AT	A	360	PASS	-	-	-	-	-	Del	-	D	117992147	117992157	1	7	322.981	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	0	6	0	6	3	27	3	27	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318968	4	118445725	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	118445725	118445731	1	12	264.836	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	6	4	28	16	28	16	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760318975	4	118480103	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	118480103	118480113	1	30	475.139	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	4	5	4	33	32	33	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319076	4	118751985	TA	T	300	PASS	-	-	-	-	-	Del	-	D	118751985	118751995	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	3	2	3	2	29	27	29	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319111	4	118865150	TG	T	540	PASS	-	-	-	-	-	Del	-	D	118865150	118865159	1	30	485.374	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	4	5	7	27	24	27	24	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319133	4	118976349	CA	C	540	PASS	NDST3	CCDS3708.1	r.?	-	-	Del	intronic	D	118976349	118976358	1	30	485.374	-	-	8	1	1	NDST3|CCDS3708.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDST3|CCDS3708.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	5	6	5	23	33	23	33	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319201	4	119187024	TC	T	413	PASS	-	-	-	-	-	Del	-	D	119187024	119187029	1	14	375.707	-	-	4	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	6	1	7	4	37	24	37	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319269	4	119434644	AT	A	273	PASS	-	-	-	-	-	Del	-	D	119434644	119434653	1	15	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	2	5	3	24	13	24	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319533	4	120271335	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	120271335	120271344	1	12	319.971	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	5	1	5	2	18	20	19	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319547	4	120300718	CT	C	370	PASS	-	-	-	-	-	Del	-	D	120300718	120300727	1	21	431.444	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	2	7	3	14	31	14	31	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319589	4	120483778	TA	T	360	PASS	PDE5A	CCDS3713.1	r.?	-	-	Del	intronic	D	120483778	120483786	1	15	323.583	-	-	7	1	1	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	2	4	2	6	22	31	22	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319595	4	120501359	ATC	A	492	PASS	PDE5A	CCDS3713.1	r.?	-	-	Del	intronic	D	120501359	120501362	2	28	481.762	-	-	1	1	1	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	3	6	3	31	14	31	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319709	4	120866579	CT	C	300	PASS	-	-	-	-	-	Del	-	D	120866579	120866589	1	6	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	0	5	3	5	19	28	19	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319792	4	121120384	A	AG	600	PASS	-	-	-	-	-	Ins	-	I	121120384	121120385	1	32	532.682	-	-	0	1	1	-	-	./.	0	0	0	0	10	12	10	13	0	0	./.	3	7	3	7	30	29	30	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319800	4	121151534	CT	C	300	PASS	-	-	-	-	-	Del	-	D	121151534	121151544	1	12	269.05	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	3	3	7	16	7	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760319831	4	121253663	CA	C	360	PASS	-	-	-	-	-	Del	-	D	121253663	121253672	1	12	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	1	5	2	7	9	32	9	32	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320240	4	122488922	GA	G	456	PASS	-	-	-	-	-	Del	-	D	122488922	122488930	1	24	430.24	-	-	7	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	3	6	3	24	16	24	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320312	4	122718981	C	CT	360	PASS	EXOSC9	CCDS34057.1	r.?	-	-	Ins	upstream	I	122718981	122718990	1	12	319.368	-	-	8	1	1	EXOSC9|CCDS34057.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	EXOSC9|CCDS34057.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	21	12	21	12	0	0	./.	5	1	7	3	36	17	36	17	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320429	4	123043340	TG	T	360	PASS	-	-	-	-	-	Del	-	D	123043340	123043347	1	7	323.583	-	-	6	1	1	-	-	./.	0	0	0	0	21	7	21	7	0	0	./.	0	6	1	9	23	26	23	26	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320462	4	123168297	CT	C	389	PASS	KIAA1109	CCDS43267.1	r.?	-	-	Del	intronic	D	123168297	123168306	1	8	369.085	-	-	8	1	1	KIAA1109|CCDS43267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1109|CCDS43267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	7	0	6	0	22	3	23	3	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320654	4	123949825	C	CT	420	PASS	SPATA5	CCDS3730.1	r.?	-	-	Ins	intronic	I	123949825	123949835	1	14	367.88	-	-	9	1	1	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	1	6	1	6	15	29	15	29	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320684	4	124015369	A	AT	300	PASS	SPATA5	CCDS3730.1	r.?	-	-	Ins	intronic	I	124015369	124015377	1	10	266.642	-	-	7	1	1	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	1	4	1	5	15	23	15	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320689	4	124027221	CT	C	360	PASS	SPATA5	CCDS3730.1	r.?	-	-	Del	intronic	D	124027221	124027231	1	12	323.583	-	-	9	1	1	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPATA5|CCDS3730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	1	5	1	9	10	33	10	33	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320774	4	124252673	A	AT	483	PASS	-	-	-	-	-	Ins	-	I	124252673	124252682	1	36	533.284	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	5	5	6	8	32	36	32	36	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760320851	4	124438715	GT	G	600	PASS	-	-	-	-	-	Del	-	D	124438715	124438724	1	35	539.305	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	6	4	7	4	31	33	31	33	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321035	4	124959957	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	124959957	124959967	1	7	319.368	-	-	9	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	6	0	6	0	23	7	23	7	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321300	4	126022894	CA	C	360	PASS	-	-	-	-	-	Del	-	D	126022894	126022903	1	15	322.981	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	4	2	4	29	22	29	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321417	4	126476277	GT	G	300	PASS	-	-	-	-	-	Del	-	D	126476277	126476285	1	10	269.05	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	1	7	2	34	13	34	13	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321454	4	126624389	TGAGA	T	600	PASS	-	-	-	-	-	Del	-	D	126624389	126624407	4	27	538.101	-	-	8	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	8	2	11	5	35	27	35	27	11	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321569	4	126941036	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	126941036	126941044	1	20	372.697	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	3	6	3	27	16	27	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321744	4	127629650	TA	T	300	PASS	-	-	-	-	-	Del	-	D	127629650	127629659	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	5	1	21	4	21	4	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321854	4	127958139	AC	A	480	PASS	-	-	-	-	-	Del	-	D	127958139	127958145	1	24	431.444	-	-	5	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	3	7	6	25	35	25	35	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321860	4	127970382	AG	A	660	PASS	-	-	-	-	-	Del	-	D	127970382	127970384	1	30	592.633	-	-	1	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	2	9	3	9	29	37	29	37	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321892	4	128065805	CA	C	420	PASS	-	-	-	-	-	Del	-	D	128065805	128065814	1	20	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	4	4	24	19	24	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760321981	4	128430234	GT	G	360	PASS	-	-	-	-	-	Del	-	D	128430234	128430244	1	16	322.981	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	4	5	21	33	21	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322052	4	128746127	TA	T	300	PASS	HSPA4L	CCDS3734.1	r.?	-	-	Del	intronic	D	128746127	128746137	1	12	269.652	-	-	9	1	1	HSPA4L|CCDS3734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HSPA4L|CCDS3734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	4	2	30	20	30	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322074	4	128806250	TA	T	348	PASS	PLK4	CCDS3735.1	r.?	-	-	Del	intronic	D	128806250	128806260	1	15	323.583	-	-	9	1	1	PLK4|CCDS3735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLK4|CCDS3735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	2	4	7	5	27	27	27	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322101	4	128938009	CT	C	660	PASS	C4orf29	CCDS47131.1	r.?	-	-	Del	intronic	D	128938009	128938018	1	30	593.235	-	-	8	1	1	C4orf29|CCDS47131.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf29|CCDS47131.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	2	9	4	12	27	28	27	28	4	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322106	4	128945363	A	ATG	300	PASS	C4orf29	CCDS47131.1	r.?	-	-	Ins	intronic	I	128945363	128945376	2	12	260.622	-	-	6	1	1	C4orf29|CCDS47131.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf29|CCDS47131.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	2	3	2	4	26	31	27	32	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322190	4	129156429	CT	C	449	PASS	-	-	-	-	-	Del	-	D	129156429	129156438	1	24	430.24	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	5	5	6	27	26	27	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322205	4	129207741	GA	G	420	PASS	PGRMC2	CCDS3739.1	r.?	-	-	Del	intronic	D	129207741	129207751	1	18	375.105	-	-	9	1	1	PGRMC2|CCDS3739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGRMC2|CCDS3739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	2	5	2	5	22	14	22	14	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322318	4	129577561	TAA	T	300	PASS	-	-	-	-	-	Del	-	D	129577561	129577569	2	12	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	4	3	31	16	31	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322434	4	129899331	CT	C	420	PASS	SCLT1	CCDS3740.1	r.?	-	-	Del	intronic	D	129899331	129899339	1	14	377.513	-	-	7	1	1	SCLT1|CCDS3740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCLT1|CCDS3740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	1	9	1	35	13	35	13	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322438	4	129928306	CT	C	420	PASS	SCLT1	CCDS3740.1	r.?	-	-	Del	intronic	D	129928306	129928316	1	20	377.513	-	-	9	1	1	SCLT1|CCDS3740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCLT1|CCDS3740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	4	3	5	5	25	23	25	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322484	4	130073254	AT	A	420	PASS	-	-	-	-	-	Del	-	D	130073254	130073263	1	18	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	2	5	24	16	24	16	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322504	4	130165049	AT	A	300	PASS	-	-	-	-	-	Del	-	D	130165049	130165059	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	2	5	11	22	11	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322539	4	130268343	GA	G	300	PASS	-	-	-	-	-	Del	-	D	130268343	130268353	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	4	1	5	1	32	25	32	25	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322580	4	130447445	CG	C	300	PASS	-	-	-	-	-	Del	-	D	130447445	130447450	1	10	269.652	-	-	4	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	2	32	20	32	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322648	4	130746308	TA	T	360	PASS	-	-	-	-	-	Del	-	D	130746308	130746317	1	7	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	0	6	2	6	6	19	6	19	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322760	4	131167263	AG	A	420	PASS	-	-	-	-	-	Del	-	D	131167263	131167270	1	20	377.513	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	3	6	4	26	32	26	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760322930	4	131787165	GT	G	360	PASS	-	-	-	-	-	Del	-	D	131787165	131787174	1	12	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	5	2	5	17	36	17	36	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323005	4	132112322	CA	C	300	PASS	-	-	-	-	-	Del	-	D	132112322	132112332	1	12	269.05	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	2	24	7	24	7	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323020	4	132195458	GA	G	360	PASS	-	-	-	-	-	Del	-	D	132195458	132195467	1	16	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	6	4	27	37	27	37	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323073	4	132410577	AT	A	329	PASS	-	-	-	-	-	Del	-	D	132410577	132410584	1	16	322.379	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	3	5	5	26	28	26	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323099	4	132488303	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	132488303	132488312	1	40	586.613	-	-	8	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	7	5	7	29	32	29	32	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323104	4	132500131	CA	C	500	PASS	-	-	-	-	-	Del	-	D	132500131	132500136	1	24	485.374	-	-	4	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	7	2	7	3	36	17	36	17	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323234	4	132750873	TAAG	T	424	PASS	-	-	-	-	-	Del	-	D	132750873	132750881	3	32	539.305	-	-	2	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	7	3	8	3	19	19	19	19	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323279	4	132965275	CT	C	360	PASS	-	-	-	-	-	Del	-	D	132965275	132965284	1	16	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	3	3	4	5	12	28	12	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323524	4	133644359	GT	G	420	PASS	-	-	-	-	-	Del	-	D	133644359	133644368	1	8	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	0	7	0	7	4	25	4	25	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323663	4	134218320	AT	A	300	PASS	-	-	-	-	-	Del	-	D	134218320	134218330	1	12	268.448	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	3	3	20	28	20	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323672	4	134320573	AT	A	360	PASS	-	-	-	-	-	Del	-	D	134320573	134320580	1	12	323.583	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	1	7	2	20	30	20	30	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760323702	4	134494857	CT	C	300	PASS	-	-	-	-	-	Del	-	D	134494857	134494867	1	10	269.05	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	4	1	33	16	33	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324064	4	135940303	GC	G	294	PASS	-	-	-	-	-	Del	-	D	135940303	135940306	1	12	267.846	-	-	2	1	1	-	-	./.	0	0	0	0	13	3	13	3	0	0	./.	3	2	6	6	26	22	26	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324283	4	136772646	CT	C	300	PASS	-	-	-	-	-	Del	-	D	136772646	136772654	1	12	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	4	2	23	8	23	8	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324392	4	137231236	CT	C	300	PASS	-	-	-	-	-	Del	-	D	137231236	137231245	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	4	3	10	19	10	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324449	4	137445251	CT	C	420	PASS	-	-	-	-	-	Del	-	D	137445251	137445256	1	8	377.513	-	-	4	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	7	0	9	2	26	33	26	33	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324638	4	138117043	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	138117043	138117050	1	10	266.642	-	-	6	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	1	12	26	12	26	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324639	4	138117385	AT	A	300	PASS	-	-	-	-	-	Del	-	D	138117385	138117393	1	12	268.448	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	4	3	29	14	29	14	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324667	4	138221950	CT	C	300	PASS	-	-	-	-	-	Del	-	D	138221950	138221960	1	12	267.244	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	2	4	2	28	24	28	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324899	4	138981775	CT	C	420	PASS	-	-	-	-	-	Del	-	D	138981775	138981784	1	20	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	4	6	4	28	28	28	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324910	4	139062586	TA	T	360	PASS	-	-	-	-	-	Del	-	D	139062586	139062596	1	15	322.981	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	2	4	3	5	29	26	29	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760324950	4	139235360	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	139235360	139235369	1	10	266.642	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	15	16	0	0	./.	4	1	6	4	33	26	33	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325074	4	139602308	CCA	C	420	PASS	-	-	-	-	-	Del	-	D	139602308	139602313	2	18	377.513	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	2	5	4	19	30	19	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325267	4	140092627	C	CA	720	PASS	ELF2	CCDS3744.1	r.?	-	-	Ins	intronic	I	140092627	140092637	1	48	637.533	-	-	9	1	1	ELF2|CCDS3744.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ELF2|CCDS3744.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	7	5	9	6	32	26	32	26	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325307	4	140213493	AT	A	360	PASS	NDUFC1	CCDS3746.1	r.?	-	-	Del	intronic	D	140213493	140213495	1	16	322.379	-	-	1	1	1	NDUFC1|CCDS3746.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	NDUFC1|CCDS3746.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	3	3	3	4	21	24	21	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325381	4	140452134	T	TG	300	PASS	SETD7	CCDS3748.1	r.?	-	-	Ins	intronic	I	140452134	140452139	1	10	266.642	-	-	4	1	1	SETD7|CCDS3748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SETD7|CCDS3748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	1	5	1	29	11	29	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325432	4	140589796	GGA	G	420	PASS	MGST2	CCDS3749.1	r.?	-	-	Del	intronic	D	140589796	140589810	2	18	362.462	-	-	6	1	1	MGST2|CCDS3749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGST2|CCDS3749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	2	8	6	19	19	19	19	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325526	4	140901535	AT	A	360	PASS	MAML3	CCDS43266.1	r.?	-	-	Del	intronic	D	140901535	140901542	1	15	322.981	-	-	6	1	1	MAML3|CCDS43266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAML3|CCDS43266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	5	2	24	14	24	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325736	4	141591052	AT	A	420	PASS	TBC1D9	CCDS47136.1	r.?	-	-	Del	intronic	D	141591052	141591060	1	18	377.513	-	-	7	1	1	TBC1D9|CCDS47136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D9|CCDS47136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	5	2	8	4	29	23	29	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325954	4	142261189	GA	G	360	PASS	-	-	-	-	-	Del	-	D	142261189	142261192	1	16	323.583	-	-	2	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	7	5	45	30	45	30	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760325959	4	142281323	CT	C	300	PASS	-	-	-	-	-	Del	-	D	142281323	142281333	1	12	269.05	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	3	5	22	29	22	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326038	4	142778321	AC	A	360	PASS	-	-	-	-	-	Del	-	D	142778321	142778327	1	15	323.583	-	-	5	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	2	4	4	5	29	27	29	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326126	4	143070700	G	GA	300	PASS	INPP4B	CCDS47112.1	r.?	-	-	Ins	intronic	I	143070700	143070710	1	12	266.04	-	-	9	1	-	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	3	2	6	25	31	26	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326141	4	143116610	CA	C	360	PASS	INPP4B	CCDS47112.1	r.?	-	-	Del	intronic	D	143116610	143116618	1	15	323.583	-	-	7	1	1	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	4	4	4	29	23	29	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326339	4	144073274	AT	A	360	PASS	-	-	-	-	-	Del	-	D	144073274	144073282	1	12	322.981	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	5	1	5	8	29	8	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326478	4	144549037	A	AT	360	PASS	FREM3	ENST00000329798	r.?	-	-	Ins	intronic	I	144549037	144549045	1	15	319.971	-	-	7	1	1	FREM3|ENST00000329798|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FREM3|ENST00000329798|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	13	21	13	0	0	./.	4	2	4	3	21	23	22	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326482	4	144564063	CA	C	420	PASS	FREM3	ENST00000329798	r.?	-	-	Del	intronic	D	144564063	144564071	1	14	376.911	-	-	7	1	1	FREM3|ENST00000329798|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FREM3|ENST00000329798|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	6	1	7	3	26	25	26	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326582	4	144959280	CA	C	629	PASS	GYPB	ENST00000283126	r.?	-	-	Del	intronic	D	144959280	144959290	1	40	592.633	-	-	9	1	1	GYPB|ENST00000283126|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GYPB|ENST00000283126|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	7	7	8	26	24	26	24	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326681	4	145358407	TA	T	540	PASS	-	-	-	-	-	Del	-	D	145358407	145358417	1	30	485.374	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	5	4	6	8	22	31	22	31	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326690	4	145427040	AT	A	300	PASS	-	-	-	-	-	Del	-	D	145427040	145427047	1	10	269.05	-	-	6	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	1	4	1	4	30	25	30	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326691	4	145431073	TGC	T	300	PASS	-	-	-	-	-	Del	-	D	145431073	145431084	2	10	269.652	-	-	5	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	6	3	28	25	28	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326738	4	145612040	AT	A	360	PASS	HHIP	CCDS3762.1	r.?	-	-	Del	intronic	D	145612040	145612050	1	12	323.583	-	-	9	1	1	HHIP|CCDS3762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HHIP|CCDS3762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	1	6	1	23	26	23	26	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760326874	4	146194132	GT	G	360	PASS	-	-	-	-	-	Del	-	D	146194132	146194141	1	12	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	1	6	2	30	13	30	13	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327035	4	146849276	GA	G	540	PASS	ZNF827	CCDS34072.1	r.?	-	-	Del	intronic	D	146849276	146849283	1	24	483.568	-	-	6	1	1	ZNF827|CCDS34072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF827|CCDS34072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	7	4	8	26	36	26	36	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327063	4	146961759	TC	T	420	PASS	-	-	-	-	-	Del	-	D	146961759	146961766	1	14	377.513	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	1	8	2	34	20	34	20	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327068	4	146991684	GT	G	300	PASS	-	-	-	-	-	Del	-	D	146991684	146991693	1	6	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	0	5	1	5	2	14	2	14	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327160	4	147457525	G	GTA	300	PASS	-	-	-	-	-	Ins	-	I	147457525	147457535	2	12	263.632	-	-	4	1	1	-	-	./.	0	0	0	0	19	12	19	14	0	0	./.	2	3	4	5	24	26	24	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327227	4	147695410	G	GT	360	PASS	TTC29	CCDS47141.1	r.?	-	-	Ins	intronic	I	147695410	147695415	1	12	319.971	-	-	4	1	1	TTC29|CCDS47141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC29|CCDS47141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	22	0	0	./.	1	5	7	7	33	33	33	33	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327267	4	147985037	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	147985037	147985040	1	21	426.627	-	-	2	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	6	2	6	2	31	29	31	29	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327292	4	148082136	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	148082136	148082140	2	10	269.652	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	1	4	1	4	6	26	6	26	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327324	4	148177965	C	CA	251	PASS	-	-	-	-	-	Ins	-	I	148177965	148177973	1	18	369.687	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	5	3	7	25	28	25	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327409	4	148425748	G	GA	300	PASS	EDNRA	CCDS3769.1	r.?	-	-	Ins	intronic	I	148425748	148425757	1	12	266.642	-	-	8	1	1	EDNRA|CCDS3769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDNRA|CCDS3769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	6	3	22	13	22	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327650	4	149050942	TC	T	300	PASS	NR3C2	CCDS3772.1	r.?	-	-	Del	intronic	D	149050942	149050947	1	10	269.05	-	-	4	1	1	NR3C2|CCDS3772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR3C2|CCDS3772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	5	1	32	9	32	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327765	4	149454250	CT	C	420	PASS	-	-	-	-	-	Del	-	D	149454250	149454260	1	8	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	0	7	0	8	8	30	8	30	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327766	4	149455088	CT	C	254	PASS	-	-	-	-	-	Del	-	D	149455088	149455098	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	4	3	26	6	26	6	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327781	4	149549690	CT	C	360	PASS	-	-	-	-	-	Del	-	D	149549690	149549698	1	12	321.777	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	1	5	2	9	25	34	25	34	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760327888	4	149915886	GA	G	300	PASS	-	-	-	-	-	Del	-	D	149915886	149915896	1	12	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	2	3	3	5	25	27	25	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328045	4	150538431	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	150538431	150538439	1	12	266.04	-	-	7	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	3	2	26	18	26	18	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328056	4	150600468	CA	C	480	PASS	-	-	-	-	-	Del	-	D	150600468	150600478	1	24	431.444	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	5	3	5	16	25	16	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328066	4	150668045	CA	C	420	PASS	-	-	-	-	-	Del	-	D	150668045	150668054	1	18	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	2	5	4	26	30	26	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328079	4	150754443	TA	T	540	PASS	-	-	-	-	-	Del	-	D	150754443	150754450	1	28	485.374	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	6	3	7	21	25	21	25	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328148	4	151031764	GT	G	420	PASS	DCLK2	CCDS34076.1	r.?	-	-	Del	intronic	D	151031764	151031771	1	14	377.513	-	-	6	1	1	DCLK2|CCDS34076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCLK2|CCDS34076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	6	1	7	3	28	18	28	18	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328212	4	151179712	GGAA	G	480	PASS	DCLK2	CCDS34076.1	r.?	-	-	Del	downstream	D	151179712	151179720	3	21	431.444	-	-	2	1	1	DCLK2|CCDS34076.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DCLK2|CCDS34076.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	9	17	9	0	0	./.	6	2	6	3	30	18	30	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328260	4	151300004	GA	G	300	PASS	LRBA	CCDS3773.1	r.?	-	-	Del	intronic	D	151300004	151300013	1	6	269.652	-	-	8	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	0	5	0	5	0	19	0	19	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328328	4	151479053	GT	G	329	PASS	LRBA	CCDS3773.1	r.?	-	-	Del	intronic	D	151479053	151479061	1	16	323.583	-	-	7	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	3	3	5	3	34	21	34	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328455	4	151956535	CTGTT	C	389	PASS	-	-	-	-	-	Del	-	D	151956535	151956543	4	20	377.513	-	-	1	1	1	-	-	./.	0	0	0	0	3	12	3	12	0	0	./.	3	4	4	5	26	28	26	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328731	4	152554415	TA	T	480	PASS	FAM160A1	CCDS47146.1	r.?	-	-	Del	intronic	D	152554415	152554425	1	24	431.444	-	-	9	1	1	FAM160A1|CCDS47146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM160A1|CCDS47146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	5	5	7	23	23	23	23	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328923	4	153310552	TAC	T	300	PASS	FBXW7	CCDS3777.1	r.?	-	-	Del	intronic	D	153310552	153310566	2	12	268.448	-	-	6	1	1	FBXW7|CCDS3777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW7|CCDS3777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	6	3	31	16	31	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328939	4	153467346	CT	C	269	PASS	-	-	-	-	-	Del	-	D	153467346	153467355	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	4	5	23	20	23	20	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760328973	4	153559672	AT	A	300	PASS	TMEM154	CCDS3779.1	r.?	-	-	Del	intronic	D	153559672	153559682	1	12	269.652	-	-	9	1	1	TMEM154|CCDS3779.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM154|CCDS3779.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	3	16	33	16	33	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329032	4	153670227	CT	C	416	PASS	-	-	-	-	-	Del	-	D	153670227	153670234	1	30	485.374	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	5	5	6	22	31	22	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329311	4	154546543	CA	C	480	PASS	KIAA0922	CCDS3783.2	r.?	-	-	Del	intronic	D	154546543	154546553	1	24	431.444	-	-	9	1	1	KIAA0922|CCDS3783.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0922|CCDS3783.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	5	4	9	29	30	29	30	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329428	4	154805746	CT	C	300	PASS	-	-	-	-	-	Del	-	D	154805746	154805754	1	10	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	2	4	28	34	28	34	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329472	4	155038927	GA	G	300	PASS	-	-	-	-	-	Del	-	D	155038927	155038935	1	12	268.448	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	5	3	22	29	22	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329528	4	155220243	T	TA	300	PASS	DCHS2	CCDS3785.1	r.?	-	-	Ins	intronic	I	155220243	155220252	1	10	260.622	-	-	8	1	1	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	4	1	4	1	28	1	28	2	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329549	4	155282776	ATC	A	300	PASS	DCHS2	CCDS3785.1	r.?	-	-	Del	intronic	D	155282776	155282785	2	12	269.652	-	-	4	1	1	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	3	2	4	5	23	21	23	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329568	4	155345309	CA	C	540	PASS	DCHS2	CCDS47150.1	r.?	-	-	Del	intronic	D	155345309	155345317	1	28	485.374	-	-	7	1	1	DCHS2|CCDS47150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCHS2|CCDS47150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	6	4	6	28	20	28	20	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329610	4	155470614	TA	T	360	PASS	PLRG1	ENST00000499023	r.?	-	-	Del	intronic	D	155470614	155470623	1	15	323.583	-	-	8	1	1	PLRG1|ENST00000499023|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLRG1|ENST00000499023|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	4	5	4	19	33	19	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329632	4	155558489	CA	C	300	PASS	LRAT	ENST00000502525	r.?	-	-	Del	intronic	D	155558489	155558498	1	10	269.652	-	-	8	1	1	LRAT|ENST00000502525|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRAT|ENST00000502525|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	4	1	5	1	24	17	24	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329740	4	155994739	TA	T	360	PASS	-	-	-	-	-	Del	-	D	155994739	155994746	1	12	323.583	-	-	6	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	5	1	7	14	35	14	35	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329755	4	156044651	CT	C	300	PASS	-	-	-	-	-	Del	-	D	156044651	156044659	1	6	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	0	5	0	6	5	23	5	23	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329777	4	156110060	GT	G	360	PASS	-	-	-	-	-	Del	-	D	156110060	156110065	1	15	323.583	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	5	2	14	20	14	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329778	4	156113554	GA	G	300	PASS	-	-	-	-	-	Del	-	D	156113554	156113563	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	2	12	15	12	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329779	4	156114424	GC	G	300	PASS	-	-	-	-	-	Del	-	D	156114424	156114428	1	6	269.652	-	-	3	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	0	5	1	5	20	21	20	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760329796	4	156196263	TA	T	300	PASS	-	-	-	-	-	Del	-	D	156196263	156196272	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	5	3	31	18	31	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330112	4	157197586	TA	T	600	PASS	-	-	-	-	-	Del	-	D	157197586	157197593	1	32	538.101	-	-	6	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	7	6	8	32	35	32	35	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330166	4	157403073	AT	A	360	PASS	-	-	-	-	-	Del	-	D	157403073	157403079	1	15	323.583	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	4	2	22	20	22	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330330	4	158071971	C	CT	480	PASS	GLRB	CCDS3796.1	r.?	-	-	Ins	intronic	I	158071971	158071979	1	24	426.627	-	-	7	1	1	GLRB|CCDS3796.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GLRB|CCDS3796.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	3	5	5	6	16	21	17	21	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330344	4	158165081	GA	G	300	PASS	GRIA2	CCDS43275.1	r.?	-	-	Del	intronic	D	158165081	158165090	1	6	269.652	-	-	8	1	1	GRIA2|CCDS43275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIA2|CCDS43275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	0	5	0	5	23	32	23	32	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330507	4	158682926	TA	T	420	PASS	-	-	-	-	-	Del	-	D	158682926	158682935	1	18	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	2	5	2	26	23	26	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330537	4	158807641	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	158807641	158807650	1	15	319.971	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	4	2	4	3	27	26	27	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330881	4	159919149	AT	A	540	PASS	C4orf45	CCDS47156.1	r.?	-	-	Del	intronic	D	159919149	159919159	1	30	483.568	-	-	9	1	1	C4orf45|CCDS47156.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf45|CCDS47156.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	4	6	5	22	30	22	30	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760330982	4	160190785	CT	C	360	PASS	RAPGEF2	CCDS43277.1	r.?	-	-	Del	intronic	D	160190785	160190791	1	16	323.583	-	-	5	1	1	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	3	5	19	5	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331021	4	160283216	CT	C	360	PASS	RAPGEF2	CCDS43277.1	r.?	-	-	Del	downstream	D	160283216	160283226	1	15	323.583	-	-	9	1	1	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	4	4	26	25	26	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331068	4	160389621	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	160389621	160389628	1	12	266.642	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	3	2	30	28	31	29	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331077	4	160419144	AT	A	360	PASS	-	-	-	-	-	Del	-	D	160419144	160419154	1	15	322.981	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	2	5	2	20	17	20	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331086	4	160449113	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	160449113	160449121	1	12	319.971	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	11	13	0	0	./.	5	1	5	3	19	18	19	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331093	4	160466424	TA	T	480	PASS	-	-	-	-	-	Del	-	D	160466424	160466434	1	16	431.444	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	7	3	10	19	40	19	40	3	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331673	4	162595479	GA	G	360	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162595479	162595487	1	7	323.583	-	-	7	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	6	0	7	0	25	1	25	1	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331713	4	162785080	G	GA	600	PASS	FSTL5	CCDS3802.1	r.?	-	-	Ins	intronic	I	162785080	162785088	1	32	532.08	-	-	7	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	7	3	7	26	32	27	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331722	4	162812127	TA	T	358	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162812127	162812137	1	20	377.513	-	-	9	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	4	3	6	3	31	16	31	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760331767	4	162945196	TA	T	420	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162945196	162945204	1	20	377.513	-	-	7	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	4	3	4	25	22	25	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332096	4	164010883	GA	G	420	PASS	-	-	-	-	-	Del	-	D	164010883	164010893	1	20	376.911	-	-	9	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	3	4	5	5	30	16	30	16	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332138	4	164239008	CCA	C	420	PASS	-	-	-	-	-	Del	-	D	164239008	164239013	2	14	376.309	-	-	2	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	1	6	1	6	15	32	15	32	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332154	4	164276027	CTT	C	360	PASS	NPY5R	CCDS3804.1	r.?	-	-	Del	downstream	D	164276027	164276032	2	15	323.583	-	-	4	1	1	NPY5R|CCDS3804.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NPY5R|CCDS3804.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	10	11	10	0	0	./.	2	4	3	4	28	27	28	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332459	4	165082093	CA	C	300	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	165082093	165082102	1	12	269.652	-	-	8	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	3	6	24	22	24	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332545	4	165388775	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	165388775	165388781	1	20	373.299	-	-	5	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	4	5	4	30	33	31	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332627	4	165627941	GAGCA	G	538	PASS	-	-	-	-	-	Del	-	D	165627941	165627950	4	36	539.305	-	-	2	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	5	5	6	33	25	33	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332723	4	165912490	AC	A	389	PASS	-	-	-	-	-	Del	-	D	165912490	165912499	1	18	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	12	3	12	3	0	0	./.	5	2	5	2	29	14	29	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332757	4	166019770	CA	C	334	PASS	TMEM192	CCDS43279.1	r.?	-	-	Del	intronic	D	166019770	166019779	1	15	323.583	-	-	8	1	1	TMEM192|CCDS43279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM192|CCDS43279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	2	4	5	7	28	28	28	28	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332761	4	166038188	CA	C	300	PASS	TMEM192	CCDS43279.1	r.?	-	-	Del	upstream	D	166038188	166038198	1	12	269.652	-	-	9	1	1	TMEM192|CCDS43279.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TMEM192|ENST00000506087|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	4	4	20	30	20	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332791	4	166156150	CA	C	317	PASS	KLHL2	CCDS34094.1	r.?	-	-	Del	intronic	D	166156150	166156160	1	7	323.583	-	-	9	1	1	KLHL2|CCDS34094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL2|CCDS34094.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	0	6	0	8	4	24	4	24	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760332880	4	166560238	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	166560238	166560246	1	6	265.438	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	0	5	2	6	24	26	25	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333005	4	166975570	AT	A	540	PASS	TLL1	CCDS3811.1	r.?	-	-	Del	intronic	D	166975570	166975580	1	30	482.364	-	-	9	1	1	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	5	5	7	12	21	12	21	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333242	4	167800656	TA	T	420	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	167800656	167800665	1	14	376.911	-	-	8	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	6	1	7	1	25	18	25	18	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333291	4	168000760	GA	G	540	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	168000760	168000770	1	30	485.374	-	-	9	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	5	6	6	30	31	30	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333323	4	168113115	AT	A	360	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	168113115	168113123	1	15	322.981	-	-	7	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	2	4	3	13	13	13	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333431	4	168449292	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	168449292	168449300	1	18	373.299	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	16	10	0	0	./.	5	2	5	4	29	13	29	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333529	4	168681149	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	168681149	168681152	2	10	263.03	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	1	4	1	4	19	27	19	27	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333803	4	169572728	CT	C	600	PASS	PALLD	CCDS34098.1	r.?	-	-	Del	intronic	D	169572728	169572738	1	27	536.897	-	-	9	1	1	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	8	2	9	2	32	31	32	31	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333813	4	169606149	TA	T	300	PASS	PALLD	CCDS34098.1	r.?	-	-	Del	intronic	D	169606149	169606159	1	12	269.652	-	-	9	1	1	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	4	5	20	21	20	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333827	4	169662673	T	TA	300	PASS	PALLD	CCDS34098.1	r.?	-	-	Ins	intronic	I	169662673	169662683	1	12	266.642	-	-	9	1	1	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	5	2	30	22	30	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333846	4	169694032	GAA	G	300	PASS	PALLD	CCDS34098.1	r.?	-	-	Del	intronic	D	169694032	169694036	2	10	267.244	-	-	3	1	1	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PALLD|CCDS34098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	6	16	31	16	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760333942	4	169951744	AT	A	360	PASS	-	-	-	-	-	Del	-	D	169951744	169951753	1	15	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	2	5	3	29	19	29	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334048	4	170254150	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	170254150	170254159	1	35	532.08	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	6	5	7	24	32	25	32	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334075	4	170365491	TA	T	360	PASS	NEK1	CCDS47162.1	r.?	-	-	Del	intronic	D	170365491	170365501	1	16	322.981	-	-	9	1	1	NEK1|CCDS47162.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK1|CCDS47162.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	3	3	4	4	9	14	9	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334131	4	170644232	TTATC	T	418	PASS	CLCN3	CCDS34100.1	r.?	-	-	Del	downstream	D	170644232	170644238	4	24	431.444	-	-	1	1	1	CLCN3|CCDS34100.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLCN3|ENST00000513761|r.6101_6104delUAUC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	11	8	11	0	0	./.	3	5	3	7	26	20	26	20	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334147	4	170693519	AT	A	480	PASS	-	-	-	-	-	Del	-	D	170693519	170693529	1	25	431.444	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	5	6	23	27	23	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334179	4	170793918	AT	A	360	PASS	-	-	-	-	-	Del	-	D	170793918	170793924	1	12	321.175	-	-	5	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	1	7	3	24	21	24	21	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334216	4	170858137	TA	T	300	PASS	-	-	-	-	-	Del	-	D	170858137	170858146	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	6	3	27	24	27	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334262	4	171065473	T	TC	420	PASS	-	-	-	-	-	Ins	-	I	171065473	171065480	1	20	372.095	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	4	3	21	31	21	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334409	4	171505370	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	171505370	171505380	1	20	373.299	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	3	4	6	4	15	21	15	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334614	4	172448482	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	172448482	172448491	1	15	319.971	-	-	8	1	1	-	-	./.	0	0	0	0	24	7	24	7	0	0	./.	4	2	4	3	13	16	13	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334652	4	172644422	GA	G	360	PASS	-	-	-	-	-	Del	-	D	172644422	172644431	1	15	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	2	4	5	29	29	29	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760334754	4	173065596	T	TA	360	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Ins	intronic	I	173065596	173065602	1	12	319.971	-	-	5	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	5	1	8	1	32	11	32	12	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335045	4	173995734	AT	A	300	PASS	-	-	-	-	-	Del	-	D	173995734	173995741	1	6	269.652	-	-	6	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	5	0	5	1	26	55	26	55	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335128	4	174191515	GA	G	300	PASS	GALNT7	CCDS3815.1	r.?	-	-	Del	intronic	D	174191515	174191525	1	10	269.652	-	-	9	1	1	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	4	1	5	4	40	34	40	34	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335233	4	174457467	TA	T	480	PASS	-	-	-	-	-	Del	-	D	174457467	174457475	1	24	427.832	-	-	7	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	3	7	4	30	35	30	35	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335242	4	174480227	AT	A	360	PASS	-	-	-	-	-	Del	-	D	174480227	174480237	1	16	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	4	4	31	26	31	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335289	4	174580895	GT	G	420	PASS	-	-	-	-	-	Del	-	D	174580895	174580905	1	14	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	6	1	7	2	39	30	39	30	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335330	4	174782583	CA	C	300	PASS	-	-	-	-	-	Del	-	D	174782583	174782592	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	1	4	2	5	5	21	5	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335338	4	174810684	CT	C	540	PASS	-	-	-	-	-	Del	-	D	174810684	174810693	1	24	481.16	-	-	8	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	2	7	4	8	25	30	25	30	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335368	4	174919347	AC	A	420	PASS	-	-	-	-	-	Del	-	D	174919347	174919349	1	18	373.299	-	-	1	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	2	6	2	31	14	31	14	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335432	4	175133954	AC	A	360	PASS	-	-	-	-	-	Del	-	D	175133954	175133961	1	16	321.777	-	-	6	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	5	4	29	31	29	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760335612	4	175712693	CT	C	360	PASS	GLRA3	CCDS3822.1	r.?	-	-	Del	intronic	D	175712693	175712701	1	16	322.981	-	-	7	1	1	GLRA3|CCDS3822.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLRA3|CCDS3822.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	3	3	4	4	16	32	16	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336121	4	177316005	CT	C	420	PASS	-	-	-	-	-	Del	-	D	177316005	177316014	1	8	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	7	0	9	0	31	4	31	4	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336182	4	177489082	T	TG	329	PASS	-	-	-	-	-	Ins	-	I	177489082	177489090	1	15	319.971	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	13	12	0	0	./.	4	2	8	3	29	29	29	29	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336429	4	178256278	T	TA	360	PASS	NEIL3	CCDS3828.1	r.?	-	-	Ins	intronic	I	178256278	178256287	1	12	319.971	-	-	8	1	1	NEIL3|CCDS3828.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEIL3|CCDS3828.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	1	5	1	6	25	25	25	25	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336430	4	178256312	AG	A	420	PASS	NEIL3	CCDS3828.1	r.?	-	-	Del	intronic	D	178256312	178256319	1	20	376.309	-	-	6	1	1	NEIL3|CCDS3828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEIL3|CCDS3828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	4	5	4	18	21	18	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336476	4	178372611	GT	G	420	PASS	-	-	-	-	-	Del	-	D	178372611	178372621	1	14	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	6	1	8	4	32	26	32	26	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336539	4	178527146	CT	C	300	PASS	-	-	-	-	-	Del	-	D	178527146	178527155	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	4	1	4	1	14	9	14	9	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336694	4	178951553	CA	C	480	PASS	-	-	-	-	-	Del	-	D	178951553	178951563	1	21	431.444	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	6	2	7	3	26	3	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336748	4	179192459	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	179192459	179192466	1	12	266.642	-	-	6	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	5	3	20	17	20	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336778	4	179268627	G	GCA	300	PASS	-	-	-	-	-	Ins	-	I	179268627	179268640	2	6	263.632	-	-	6	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	0	5	1	6	15	43	15	43	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336964	4	179922073	GA	G	420	PASS	-	-	-	-	-	Del	-	D	179922073	179922083	1	8	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	7	0	8	1	28	3	28	3	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760336965	4	179922988	AT	A	300	PASS	-	-	-	-	-	Del	-	D	179922988	179922996	1	12	269.652	-	-	7	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	5	4	38	23	38	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337039	4	180142223	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	180142223	180142232	1	18	369.687	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	2	3	3	23	26	23	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337296	4	180847987	AT	A	600	PASS	-	-	-	-	-	Del	-	D	180847987	180847996	1	20	539.305	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	9	1	10	3	28	22	28	22	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337346	4	180976132	CT	C	420	PASS	-	-	-	-	-	Del	-	D	180976132	180976141	1	18	377.513	-	-	8	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	5	4	5	20	17	20	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337703	4	181939406	CA	C	360	PASS	-	-	-	-	-	Del	-	D	181939406	181939416	1	15	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	4	4	7	20	23	20	23	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337715	4	181989086	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	181989086	181989096	1	12	315.756	-	-	9	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	1	5	2	5	23	25	24	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337741	4	182046093	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	182046093	182046101	1	14	368.483	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	6	1	6	5	28	35	28	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337787	4	182154800	GT	G	480	PASS	-	-	-	-	-	Del	-	D	182154800	182154808	1	25	431.444	-	-	7	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	4	4	4	4	22	21	22	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337884	4	182396509	GT	G	300	PASS	-	-	-	-	-	Del	-	D	182396509	182396518	1	10	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	3	5	32	22	32	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337890	4	182404403	GT	G	360	PASS	-	-	-	-	-	Del	-	D	182404403	182404411	1	12	323.583	-	-	7	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	1	5	2	7	16	34	16	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337891	4	182409766	TA	T	360	PASS	-	-	-	-	-	Del	-	D	182409766	182409774	1	16	323.583	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	4	4	21	27	21	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760337993	4	182706852	TC	T	480	PASS	-	-	-	-	-	Del	-	D	182706852	182706859	1	21	430.24	-	-	6	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	2	7	5	27	26	27	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338004	4	182731630	TG	T	300	PASS	-	-	-	-	-	Del	-	D	182731630	182731637	1	12	269.652	-	-	6	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	4	4	18	28	18	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338031	4	182810317	TG	T	329	PASS	-	-	-	-	-	Del	-	D	182810317	182810322	1	16	322.379	-	-	4	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	3	4	15	17	15	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338117	4	183064410	T	TG	360	PASS	ODZ3	ENST00000512480	r.?	-	-	Ins	upstream	I	183064410	183064417	1	15	319.971	-	-	6	1	1	ODZ3|ENST00000512480|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ODZ3|ENST00000512480|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	7	12	7	12	0	0	./.	4	2	7	2	39	27	40	27	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338297	4	183571646	C	CT	360	PASS	ODZ3	CCDS47165.1	r.?	-	-	Ins	intronic	I	183571646	183571654	1	15	319.971	-	-	7	1	1	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	2	4	2	6	10	23	10	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338741	4	184591947	GT	G	840	PASS	C4orf41	CCDS34112.1	r.?	-	-	Del	intronic	D	184591947	184591957	1	60	753.221	-	-	9	1	1	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	9	6	9	29	34	29	34	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338749	4	184617877	GA	G	300	PASS	C4orf41	CCDS34112.1	r.?	-	-	Del	intronic	D	184617877	184617881	1	10	269.652	-	-	3	1	1	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	1	4	2	4	17	29	17	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338754	4	184623552	GA	G	269	PASS	C4orf41	CCDS34112.1	r.?	-	-	Del	intronic	D	184623552	184623560	1	12	263.632	-	-	7	1	1	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	2	3	3	4	23	23	23	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338761	4	184636451	G	GC	300	PASS	C4orf41	CCDS34112.1	r.?	-	-	Ins	downstream	I	184636451	184636458	1	12	266.642	-	-	6	1	1	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	3	3	27	25	27	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760338764	4	184638257	GA	G	300	PASS	C4orf41	CCDS34112.1	r.?	-	-	Del	downstream	D	184638257	184638267	1	10	265.438	-	-	9	1	1	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C4orf41|CCDS34112.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	7	7	7	0	0	./.	1	4	1	5	34	27	34	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339082	4	185407481	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	185407481	185407487	1	18	373.299	-	-	5	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	5	3	7	22	36	22	36	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339087	4	185420160	GA	G	420	PASS	-	-	-	-	-	Del	-	D	185420160	185420170	1	18	377.513	-	-	9	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	5	2	6	5	27	25	27	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339254	4	185812537	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	185812537	185812546	1	20	373.299	-	-	8	1	1	-	-	./.	0	0	0	0	12	5	13	5	0	0	./.	3	4	5	5	17	21	18	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339311	4	186006459	GT	G	300	PASS	-	-	-	-	-	Del	-	D	186006459	186006469	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	1	4	9	24	9	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339371	4	186119943	CA	C	360	PASS	KIAA1430	CCDS47168.1	r.?	-	-	Del	intronic	D	186119943	186119952	1	12	323.583	-	-	8	1	1	KIAA1430|CCDS47168.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1430|CCDS47168.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	1	5	1	8	18	16	18	16	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339411	4	186167046	AT	A	300	PASS	SNX25	CCDS34116.1	r.?	-	-	Del	intronic	D	186167046	186167055	1	10	268.448	-	-	8	1	1	SNX25|CCDS34116.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SNX25|CCDS34116.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	1	4	3	4	26	19	26	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339427	4	186226567	CT	C	360	PASS	SNX25	CCDS34116.1	r.?	-	-	Del	intronic	D	186226567	186226575	1	16	323.583	-	-	7	1	1	SNX25|CCDS34116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX25|CCDS34116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	5	3	26	27	26	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339438	4	186292529	T	TA	480	PASS	LRP2BP	CCDS3840.1	r.?	-	-	Ins	intronic	I	186292529	186292536	1	25	426.627	-	-	6	1	1	LRP2BP|CCDS3840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP2BP|CCDS3840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	4	8	5	27	27	27	27	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339537	4	186510296	CT	C	360	PASS	SORBS2	CCDS3845.1	r.?	-	-	Del	intronic	D	186510296	186510306	1	16	322.981	-	-	9	1	1	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	3	5	3	24	17	24	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339614	4	186724469	CA	C	420	PASS	SORBS2	CCDS3845.1	r.?	-	-	Del	intronic	D	186724469	186724478	1	20	377.513	-	-	8	1	1	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	4	3	7	17	23	17	23	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339667	4	186867493	CA	C	360	PASS	SORBS2	CCDS3845.1	r.?	-	-	Del	intronic	D	186867493	186867501	1	12	323.583	-	-	7	1	1	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	6	1	28	16	28	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339689	4	186938966	GA	G	540	PASS	-	-	-	-	-	Del	-	D	186938966	186938975	1	30	482.966	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	4	5	5	28	26	28	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339692	4	186947783	TG	T	300	PASS	-	-	-	-	-	Del	-	D	186947783	186947790	1	12	269.652	-	-	6	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	2	4	2	19	29	19	29	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339697	4	186954861	GA	G	300	PASS	-	-	-	-	-	Del	-	D	186954861	186954870	1	10	267.244	-	-	8	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	3	4	22	34	22	34	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339706	4	186989957	AT	A	480	PASS	TLR3	CCDS3846.1	r.?	-	-	Del	upstream	D	186989957	186989967	1	25	431.444	-	-	9	1	1	TLR3|CCDS3846.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TLR3|CCDS3846.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	19	11	19	11	0	0	./.	4	4	5	5	36	20	36	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339748	4	187072553	AT	A	600	PASS	FAM149A	CCDS34117.1	r.?	-	-	Del	intronic	D	187072553	187072563	1	35	538.101	-	-	9	1	1	FAM149A|CCDS34117.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM149A|CCDS34117.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	6	4	10	4	35	21	35	21	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339817	4	187234934	CA	C	300	PASS	-	-	-	-	-	Del	-	D	187234934	187234943	1	12	269.652	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	3	2	3	8	22	29	22	29	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339950	4	187607427	AT	A	300	PASS	FAT1	CCDS47177.1	r.?	-	-	Del	intronic	D	187607427	187607435	1	10	269.652	-	-	7	1	1	FAT1|CCDS47177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAT1|CCDS47177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	5	7	19	44	19	44	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760339971	4	187661049	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	187661049	187661057	1	12	266.642	-	-	7	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	2	3	3	3	37	9	37	9	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340009	4	187772843	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	187772843	187772849	1	70	799.926	-	-	5	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	9	7	10	32	34	32	34	7	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340023	4	187812849	AT	A	360	PASS	-	-	-	-	-	Del	-	D	187812849	187812858	1	15	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	6	5	29	23	29	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340147	4	188182927	TA	T	300	PASS	-	-	-	-	-	Del	-	D	188182927	188182937	1	10	269.652	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	1	4	1	5	5	26	5	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340227	4	188421194	CT	C	420	PASS	-	-	-	-	-	Del	-	D	188421194	188421199	1	20	377.513	-	-	4	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	5	4	26	23	26	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340271	4	188519117	TA	T	360	PASS	-	-	-	-	-	Del	-	D	188519117	188519126	1	15	323.583	-	-	8	1	1	-	-	./.	0	0	0	0	19	4	19	4	0	0	./.	4	2	8	2	34	21	34	21	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340408	4	188923331	CA	C	600	PASS	ZFP42	CCDS3849.1	r.?	-	-	Del	intronic	D	188923331	188923341	1	35	537.499	-	-	9	1	1	ZFP42|CCDS3849.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZFP42|CCDS3849.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	6	4	7	23	38	23	38	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340509	4	189069648	C	CA	389	PASS	TRIML1	CCDS3851.1	r.?	-	-	Ins	downstream	I	189069648	189069658	1	20	370.891	-	-	9	1	1	TRIML1|CCDS3851.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TRIML1|CCDS3851.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	5	6	23	26	23	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340705	4	189445116	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	189445116	189445126	1	12	255.203	-	-	9	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	3	2	4	2	27	19	28	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340767	4	189566383	AT	A	360	PASS	-	-	-	-	-	Del	-	D	189566383	189566393	1	15	321.777	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	6	2	25	20	25	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760340897	4	189908181	CT	C	360	PASS	-	-	-	-	-	Del	-	D	189908181	189908191	1	16	323.583	-	-	9	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	3	3	3	4	31	20	31	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760342280	5	163157	AC	A	420	PASS	PLEKHG4B	CCDS34124.1	r.1953delC	c.1903delC	p.S636fs*88	Del	frameshift	D	163157	163161	1	20	376.26	-	-	3	1	1	PLEKHG4B|CCDS34124.1|r.1953delC|c.1903delC|p.S636fs*88|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PLEKHG4B|CCDS34124.1|r.1953delC|c.1903delC|p.S636fs*88|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	9	7	9	0	0	./.	3	4	5	5	30	25	30	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760342669	5	1577713	CT	C	480	PASS	-	-	-	-	-	Del	-	D	1577713	1577723	1	24	432.075	-	-	9	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	3	5	7	5	27	22	27	22	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343014	5	2593807	CA	C	420	PASS	-	-	-	-	-	Del	-	D	2593807	2593815	1	14	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	6	1	6	1	37	25	37	25	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343271	5	3301264	CT	C	600	PASS	-	-	-	-	-	Del	-	D	3301264	3301274	1	35	536.482	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	6	4	11	17	30	17	30	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343288	5	3330148	AG	A	360	PASS	-	-	-	-	-	Del	-	D	3330148	3330155	1	15	324.056	-	-	6	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	2	4	3	4	22	21	22	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343308	5	3378883	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	3378883	3378892	1	16	319.842	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	3	6	4	25	40	25	41	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343403	5	3599264	G	GTC	300	PASS	IRX1	CCDS34132.1	r.?	-	-	Ins	intronic	I	3599264	3599281	2	12	256.2	-	-	8	1	1	IRX1|CCDS34132.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IRX1|CCDS34132.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	4	21	35	22	35	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343428	5	3684597	AT	A	420	PASS	-	-	-	-	-	Del	-	D	3684597	3684607	1	18	372.647	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	5	3	7	23	24	23	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343479	5	3851653	AT	A	257	PASS	-	-	-	-	-	Del	-	D	3851653	3851662	1	12	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	3	3	26	28	26	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343638	5	4347512	GT	G	449	PASS	-	-	-	-	-	Del	-	D	4347512	4347522	1	25	423.646	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	4	6	6	37	28	37	28	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343729	5	4663832	AT	A	449	PASS	-	-	-	-	-	Del	-	D	4663832	4663841	1	24	432.075	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	5	3	6	4	19	25	19	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343825	5	5044474	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	5044474	5044482	1	12	266.435	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	19	0	0	./.	3	2	4	2	28	23	29	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760343917	5	5316425	G	GT	360	PASS	ADAMTS16	CCDS43299.1	r.?	-	-	Ins	intronic	I	5316425	5316433	1	12	320.444	-	-	7	1	1	ADAMTS16|CCDS43299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS16|CCDS43299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	1	5	3	6	40	33	40	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344049	5	5768499	GC	G	300	PASS	-	-	-	-	-	Del	-	D	5768499	5768507	1	10	268.843	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	4	1	6	11	31	11	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344056	5	5804849	TA	T	269	PASS	-	-	-	-	-	Del	-	D	5804849	5804859	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	2	3	22	21	22	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344510	5	7214011	GT	G	300	PASS	-	-	-	-	-	Del	-	D	7214011	7214020	1	6	270.047	-	-	8	1	-	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	5	0	6	0	26	0	26	0	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344558	5	7323473	GA	G	480	PASS	-	-	-	-	-	Del	-	D	7323473	7323483	1	25	429.667	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	4	5	5	18	23	18	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344630	5	7572500	AT	A	300	PASS	ADCY2	CCDS3872.2	r.?	-	-	Del	intronic	D	7572500	7572508	1	12	270.047	-	-	7	1	1	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	4	3	37	25	37	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344687	5	7783651	TA	T	480	PASS	ADCY2	CCDS3872.2	r.?	-	-	Del	intronic	D	7783651	7783660	1	24	428.463	-	-	8	1	1	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	3	6	4	22	30	22	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344960	5	8574309	TG	T	360	PASS	-	-	-	-	-	Del	-	D	8574309	8574318	1	16	322.852	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	4	4	20	33	20	33	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760344970	5	8585306	AC	A	300	PASS	-	-	-	-	-	Del	-	D	8585306	8585313	1	12	270.047	-	-	6	1	-	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	2	3	2	3	7	16	7	16	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345027	5	8755461	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	8755461	8755476	2	18	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	5	2	5	3	23	20	23	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345032	5	8767848	TG	T	420	PASS	-	-	-	-	-	Del	-	D	8767848	8767857	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	4	3	6	24	26	24	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345193	5	9265210	CTG	C	269	PASS	SEMA5A	CCDS3875.1	r.?	-	-	Del	intronic	D	9265210	9265215	2	12	258.006	-	-	2	1	1	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	4	2	25	19	25	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345259	5	9469817	AT	A	300	PASS	SEMA5A	CCDS3875.1	r.?	-	-	Del	intronic	D	9469817	9469826	1	12	270.047	-	-	8	1	1	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	2	3	5	4	25	23	25	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345306	5	9622281	GT	G	360	PASS	-	-	-	-	-	Del	-	D	9622281	9622290	1	15	324.056	-	-	8	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	2	4	18	13	18	13	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345715	5	10821827	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	10821827	10821836	1	15	319.842	-	-	8	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	2	4	6	4	25	23	25	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345831	5	11183982	ACTCT	A	327	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11183982	11183993	4	18	378.066	-	-	5	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	5	4	8	22	28	22	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345914	5	11546839	GAGA	G	540	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11546839	11546847	3	28	486.085	-	-	2	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	3	6	3	7	23	14	23	14	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760345959	5	11727631	CT	C	420	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11727631	11727641	1	20	378.066	-	-	9	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	4	3	5	6	27	28	27	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346087	5	12151876	GA	G	329	PASS	-	-	-	-	-	Del	-	D	12151876	12151885	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	4	2	5	3	25	22	25	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346315	5	13031137	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	13031137	13031144	1	30	480.666	-	-	6	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	5	4	6	5	23	28	23	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346363	5	13187293	CT	C	360	PASS	-	-	-	-	-	Del	-	D	13187293	13187303	1	16	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	3	4	13	23	13	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346465	5	13466768	GA	G	300	PASS	-	-	-	-	-	Del	-	D	13466768	13466778	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	3	22	14	22	14	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346618	5	13930579	CTTCT	C	329	PASS	DNAH5	CCDS3882.1	r.?	-	-	Del	intronic	D	13930579	13930590	4	12	324.056	-	-	2	1	1	DNAH5|CCDS3882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH5|CCDS3882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	1	5	1	27	20	27	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346718	5	14195052	CT	C	360	PASS	TRIO	CCDS3883.1	r.?	-	-	Del	intronic	D	14195052	14195062	1	16	324.056	-	-	9	1	1	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	4	4	18	28	18	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346793	5	14436444	CG	C	600	PASS	TRIO	CCDS3883.1	r.?	-	-	Del	intronic	D	14436444	14436448	1	35	538.89	-	-	3	1	1	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	4	6	6	6	26	27	26	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346814	5	14511334	AT	A	300	PASS	TRIO	CCDS3883.1	r.?	-	-	Del	downstream	D	14511334	14511344	1	12	270.047	-	-	9	1	1	TRIO|CCDS3883.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TRIO|ENST00000513206|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	2	4	3	18	24	18	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760346882	5	14684659	GC	G	300	PASS	FAM105B	CCDS43302.1	r.?	-	-	Del	intronic	D	14684659	14684666	1	10	270.047	-	-	6	1	1	FAM105B|CCDS43302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM105B|CCDS43302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	4	1	7	1	25	15	25	15	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347004	5	15105546	GA	G	449	PASS	-	-	-	-	-	Del	-	D	15105546	15105555	1	16	432.075	-	-	8	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	1	7	1	10	19	26	19	26	1	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347100	5	15479401	CT	C	420	PASS	-	-	-	-	-	Del	-	D	15479401	15479409	1	8	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	0	7	0	8	2	34	2	34	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347124	5	15566140	CT	C	300	PASS	FBXL7	ENST00000504595	r.?	-	-	Del	intronic	D	15566140	15566150	1	10	270.047	-	-	9	1	1	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	3	10	3	0	0	./.	4	1	4	2	28	15	28	15	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347134	5	15618194	GA	G	300	PASS	FBXL7	ENST00000504595	r.?	-	-	Del	intronic	D	15618194	15618201	1	10	268.843	-	-	6	1	1	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	6	2	21	20	21	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347290	5	16209324	GA	G	420	PASS	-	-	-	-	-	Del	-	D	16209324	16209333	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	5	8	25	26	25	26	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347594	5	16907948	CT	C	300	PASS	MYO10	ENST00000427430	r.?	-	-	Del	intronic	D	16907948	16907954	1	10	268.241	-	-	5	1	1	MYO10|ENST00000427430|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO10|ENST00000427430|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	1	19	12	19	12	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347645	5	17002503	CT	C	540	PASS	-	-	-	-	-	Del	-	D	17002503	17002513	1	30	486.085	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	4	5	8	19	23	19	23	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347733	5	17109382	CT	C	477	PASS	-	-	-	-	-	Del	-	D	17109382	17109392	1	24	428.463	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	5	3	6	31	29	31	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347776	5	17172485	CA	C	480	PASS	-	-	-	-	-	Del	-	D	17172485	17172492	1	24	432.075	-	-	6	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	5	4	5	27	21	27	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347805	5	17236381	C	CT	300	PASS	BASP1	CCDS3888.1	r.?	-	-	Ins	intronic	I	17236381	17236390	1	12	267.037	-	-	8	1	1	BASP1|CCDS3888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BASP1|CCDS3888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	3	6	22	28	22	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347839	5	17349270	G	GCT	300	PASS	-	-	-	-	-	Ins	-	I	17349270	17349287	2	12	264.026	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	3	3	30	31	30	31	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760347965	5	17837771	CT	C	360	PASS	-	-	-	-	-	Del	-	D	17837771	17837779	1	15	323.454	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	2	5	6	24	26	24	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348079	5	18160097	GT	G	360	PASS	-	-	-	-	-	Del	-	D	18160097	18160106	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	2	4	4	4	6	17	6	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348305	5	18752741	AT	A	840	PASS	-	-	-	-	-	Del	-	D	18752741	18752751	1	64	756.132	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	7	7	9	11	25	24	25	24	9	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348330	5	18869293	CT	C	300	PASS	-	-	-	-	-	Del	-	D	18869293	18869301	1	10	270.047	-	-	7	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	1	4	2	4	12	15	12	15	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348382	5	19117813	GT	G	300	PASS	-	-	-	-	-	Del	-	D	19117813	19117823	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	1	4	3	6	9	19	9	19	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348420	5	19269550	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	19269550	19269553	1	16	320.444	-	-	2	1	1	-	-	./.	0	0	0	0	18	7	18	8	0	0	./.	3	3	4	3	24	11	25	11	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348479	5	19489599	GC	G	300	PASS	CDH18	CCDS3652.1	r.?	-	-	Del	intronic	D	19489599	19489606	1	10	270.047	-	-	6	1	1	CDH18|CCDS3652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	4	1	6	2	21	16	21	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348575	5	19740094	GA	G	600	PASS	CDH18	CCDS3652.1	r.?	-	-	Del	intronic	D	19740094	19740104	1	11	538.89	-	-	9	1	1	CDH18|CCDS3652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	0	10	0	10	2	32	2	32	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348679	5	20215189	TA	T	360	PASS	CDH18	CCDS3652.1	r.?	-	-	Del	intronic	D	20215189	20215197	1	15	324.056	-	-	7	1	1	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	2	5	11	25	11	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348699	5	20301071	TA	T	300	PASS	CDH18	CCDS3652.1	r.?	-	-	Del	intronic	D	20301071	20301080	1	12	270.047	-	-	8	1	1	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	4	20	16	20	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348816	5	20630270	AT	A	300	PASS	-	-	-	-	-	Del	-	D	20630270	20630279	1	12	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	2	3	2	7	21	34	21	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348830	5	20669443	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	20669443	20669448	2	16	324.056	-	-	4	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	3	3	3	4	15	18	15	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760348996	5	21240359	GT	G	300	PASS	-	-	-	-	-	Del	-	D	21240359	21240369	1	10	267.639	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	1	6	4	25	4	25	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349188	5	21577586	AT	A	420	PASS	-	-	-	-	-	Del	-	D	21577586	21577596	1	20	372.045	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	4	4	6	17	23	17	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349229	5	21737604	GT	G	277	PASS	-	-	-	-	-	Del	-	D	21737604	21737614	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	4	18	28	18	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349367	5	22318991	GA	G	420	PASS	CDH12	CCDS3890.1	r.?	-	-	Del	intronic	D	22318991	22319001	1	20	378.066	-	-	9	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	4	4	4	27	31	27	31	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349480	5	22928683	GA	G	420	PASS	-	-	-	-	-	Del	-	D	22928683	22928692	1	18	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	5	2	6	3	35	3	35	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349549	5	23361239	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	23361239	23361245	1	12	320.444	-	-	5	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	1	5	1	5	17	23	17	23	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349590	5	23546813	AT	A	300	PASS	-	-	-	-	-	Del	-	D	23546813	23546823	1	12	268.843	-	-	9	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	2	3	2	3	20	24	20	24	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349853	5	24303576	CA	C	480	PASS	-	-	-	-	-	Del	-	D	24303576	24303586	1	16	427.861	-	-	9	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	7	1	7	1	26	7	26	7	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760349981	5	24693016	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	24693016	24693030	2	12	270.047	-	-	6	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	2	4	17	25	17	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350037	5	24886393	GA	G	300	PASS	-	-	-	-	-	Del	-	D	24886393	24886403	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	1	4	24	28	24	28	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350081	5	25097427	CA	C	360	PASS	AC106810.1	ENST00000515097	r.?	-	-	Del	intronic	D	25097427	25097432	1	12	323.454	-	-	4	1	1	AC106810.1|ENST00000515097|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC106810.1|ENST00000515097|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	1	7	17	30	17	30	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350174	5	25629666	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	25629666	25629676	1	16	426.055	-	-	9	1	1	-	-	./.	0	0	0	0	16	17	17	17	0	0	./.	7	1	8	2	37	25	37	26	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350281	5	25916049	TA	T	300	PASS	-	-	-	-	-	Del	-	D	25916049	25916058	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	4	4	25	18	25	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350353	5	26109957	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	26109957	26109965	1	12	267.037	-	-	7	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	3	4	14	26	14	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350372	5	26150972	TA	T	420	PASS	-	-	-	-	-	Del	-	D	26150972	26150981	1	20	377.464	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	4	4	4	19	25	19	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350418	5	26294719	TA	T	300	PASS	-	-	-	-	-	Del	-	D	26294719	26294728	1	10	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	4	1	7	1	25	13	25	13	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350466	5	26637971	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	26637971	26637979	1	12	267.037	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	3	7	13	33	13	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350652	5	27202156	CAA	C	254	PASS	-	-	-	-	-	Del	-	D	27202156	27202165	2	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	4	3	5	3	28	24	28	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350696	5	27448945	TTA	T	300	PASS	-	-	-	-	-	Del	-	D	27448945	27448953	2	10	270.047	-	-	3	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	1	7	26	21	26	21	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350869	5	28233597	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	28233597	28233603	1	6	267.037	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	0	6	1	18	4	19	4	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760350910	5	28438179	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	28438179	28438186	1	15	319.24	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	4	4	6	24	25	24	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351008	5	28835418	TG	T	360	PASS	-	-	-	-	-	Del	-	D	28835418	28835424	1	16	324.056	-	-	5	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	3	3	4	30	24	30	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351041	5	28985730	AT	A	300	PASS	-	-	-	-	-	Del	-	D	28985730	28985737	1	12	270.047	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	4	2	20	11	20	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351061	5	29071770	TA	T	300	PASS	AC024589.2	ENST00000509556	r.?	-	-	Del	intronic	D	29071770	29071777	1	12	270.047	-	-	6	1	1	AC024589.2|ENST00000509556|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC024589.2|ENST00000509556|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	3	18	3	0	0	./.	3	2	4	2	27	4	27	4	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351397	5	30023894	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	30023894	30023903	1	16	320.444	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	15	0	0	./.	3	3	3	3	18	17	20	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351567	5	30624858	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	30624858	30624865	1	24	480.666	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	7	2	8	5	23	16	23	16	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351568	5	30628070	CA	C	420	PASS	-	-	-	-	-	Del	-	D	30628070	30628080	1	8	378.066	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	7	0	9	0	21	5	21	5	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351619	5	30816863	GT	G	420	PASS	-	-	-	-	-	Del	-	D	30816863	30816871	1	18	377.464	-	-	7	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	2	5	3	6	24	34	24	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351800	5	31355948	AT	A	420	PASS	-	-	-	-	-	Del	-	D	31355948	31355957	1	18	376.862	-	-	8	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	2	5	2	8	18	36	18	36	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351886	5	31572051	TA	T	300	PASS	-	-	-	-	-	Del	-	D	31572051	31572061	1	10	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	4	1	5	3	27	17	27	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760351920	5	31631937	CT	C	720	PASS	-	-	-	-	-	Del	-	D	31631937	31631947	1	40	637.878	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	3	9	4	9	22	18	22	18	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352183	5	32095203	AGAG	A	389	PASS	PDZD2	CCDS34137.1	r.?	-	-	Del	intronic	D	32095203	32095210	3	18	378.066	-	-	2	1	1	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	2	5	3	25	13	25	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352186	5	32107224	AT	A	300	PASS	PDZD2	CCDS34137.1	r.?	-	-	Del	intronic	D	32107224	32107233	1	12	270.047	-	-	8	1	1	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	4	2	31	14	31	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352226	5	32181240	GA	G	360	PASS	-	-	-	-	-	Del	-	D	32181240	32181250	1	15	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	2	4	2	30	36	30	36	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352261	5	32260835	C	CG	295	PASS	MTMR12	CCDS34138.1	r.?	-	-	Ins	intronic	I	32260835	32260843	1	12	262.822	-	-	7	1	1	MTMR12|CCDS34138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTMR12|CCDS34138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	4	2	27	24	27	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352283	5	32305203	CT	C	300	PASS	MTMR12	CCDS34138.1	r.?	-	-	Del	intronic	D	32305203	32305213	1	12	270.047	-	-	9	1	1	MTMR12|CCDS34138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTMR12|CCDS34138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	4	3	17	25	17	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352337	5	32382719	ATT	A	420	PASS	ZFR	CCDS34139.1	r.?	-	-	Del	intronic	D	32382719	32382729	2	18	378.066	-	-	9	1	1	ZFR|CCDS34139.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFR|CCDS34139.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	2	5	3	19	20	19	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352398	5	32482626	GT	G	300	PASS	-	-	-	-	-	Del	-	D	32482626	32482634	1	10	270.047	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	2	4	31	25	31	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352473	5	32659745	C	CT	547	PASS	-	-	-	-	-	Ins	-	I	32659745	32659752	1	32	532.267	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	11	0	0	./.	7	3	9	6	38	18	40	18	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760352789	5	33705083	GT	G	660	PASS	ADAMTS12	ENST00000504830	r.?	-	-	Del	intronic	D	33705083	33705091	1	42	592.899	-	-	7	1	1	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	6	5	7	20	27	20	27	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353170	5	34825216	C	CA	337	PASS	RAI14	CCDS34142.1	r.?	-	-	Ins	intronic	I	34825216	34825223	1	15	320.444	-	-	6	1	1	RAI14|CCDS34142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAI14|CCDS34142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	4	3	5	22	22	22	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353223	5	34968984	TA	T	360	PASS	-	-	-	-	-	Del	-	D	34968984	34968993	1	16	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	3	3	3	3	21	14	21	14	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353306	5	35241058	GT	G	540	PASS	-	-	-	-	-	Del	-	D	35241058	35241068	1	30	481.87	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	5	6	5	31	24	31	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353435	5	35848731	CA	C	298	PASS	IL7R	ENST00000508941	r.?	-	-	Del	upstream	D	35848731	35848740	1	15	322.852	-	-	8	1	1	IL7R|ENST00000508941|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	IL7R|ENST00000508941|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	12	17	12	0	0	./.	4	2	4	5	19	24	19	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353720	5	36648269	AAG	A	360	PASS	SLC1A3	CCDS3919.1	r.?	-	-	Del	intronic	D	36648269	36648274	2	12	324.056	-	-	2	1	1	SLC1A3|CCDS3919.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC1A3|CCDS3919.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	5	1	7	1	33	18	33	18	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353779	5	36837438	TA	T	360	PASS	-	-	-	-	-	Del	-	D	36837438	36837448	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	1	7	2	24	19	24	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353915	5	37316110	C	CA	660	PASS	NUP155	CCDS3921.1	r.?	-	-	Ins	intronic	I	37316110	37316118	1	40	585.674	-	-	7	1	1	NUP155|CCDS3921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUP155|CCDS3921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	12	0	0	./.	4	7	5	8	22	30	22	30	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760353964	5	37409918	C	CT	389	PASS	WDR70	CCDS34147.1	r.?	-	-	Ins	intronic	I	37409918	37409926	1	20	373.851	-	-	7	1	1	WDR70|CCDS34147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR70|CCDS34147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	3	4	4	26	25	26	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354037	5	37543545	C	CT	420	PASS	WDR70	CCDS34147.1	r.?	-	-	Ins	intronic	I	37543545	37543550	1	18	369.035	-	-	4	1	1	WDR70|CCDS34147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR70|CCDS34147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	2	6	2	27	25	27	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354383	5	38678363	GT	G	420	PASS	-	-	-	-	-	Del	-	D	38678363	38678371	1	20	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	3	5	4	29	21	29	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354517	5	39210825	C	CT	360	PASS	FYB	CCDS47200.1	r.?	-	-	Ins	intronic	I	39210825	39210829	1	7	319.24	-	-	3	1	1	FYB|CCDS47200.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FYB|CCDS47200.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	5	16	5	0	0	./.	0	6	1	7	5	25	6	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354575	5	39413617	CA	C	420	PASS	DAB2	CCDS34149.1	r.?	-	-	Del	intronic	D	39413617	39413625	1	20	378.066	-	-	7	1	1	DAB2|CCDS34149.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB2|CCDS34149.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	4	5	6	27	28	27	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354583	5	39433163	CGT	C	300	PASS	DAB2	ENST00000511792	r.?	-	-	Del	intronic	D	39433163	39433177	2	10	270.047	-	-	6	1	-	DAB2|ENST00000511792|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB2|ENST00000511792|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	4	1	9	2	27	29	27	29	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354615	5	39530322	AT	A	360	PASS	-	-	-	-	-	Del	-	D	39530322	39530331	1	12	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	5	2	6	16	25	16	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354620	5	39535300	CA	C	300	PASS	-	-	-	-	-	Del	-	D	39535300	39535305	1	10	270.047	-	-	4	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	2	4	20	30	20	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354654	5	39650169	GGA	G	329	PASS	-	-	-	-	-	Del	-	D	39650169	39650188	2	15	323.454	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	4	6	26	24	26	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354738	5	39986330	GC	G	300	PASS	-	-	-	-	-	Del	-	D	39986330	39986334	1	12	270.047	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	3	4	14	38	14	38	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354771	5	40086053	TA	T	420	PASS	-	-	-	-	-	Del	-	D	40086053	40086062	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	4	3	18	7	18	7	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354832	5	40288986	TA	T	300	PASS	-	-	-	-	-	Del	-	D	40288986	40288996	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	2	3	30	28	30	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760354867	5	40413545	TA	T	540	PASS	-	-	-	-	-	Del	-	D	40413545	40413555	1	28	486.085	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	3	6	3	24	30	24	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355043	5	40918458	CA	C	658	PASS	C7	CCDS47201.1	r.?	-	-	Del	intronic	D	40918458	40918468	1	48	640.888	-	-	9	1	1	C7|CCDS47201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7|CCDS47201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	5	7	8	8	23	16	23	16	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355175	5	41439306	TA	T	360	PASS	PLCXD3	CCDS34150.1	r.?	-	-	Del	intronic	D	41439306	41439314	1	12	324.056	-	-	7	1	1	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	5	1	9	1	34	14	34	14	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355264	5	42012426	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	42012426	42012444	2	12	270.047	-	-	8	1	-	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	3	2	3	2	22	27	22	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355630	5	43179720	CA	C	300	PASS	ZNF131	CCDS43313.1	r.?	-	-	Del	downstream	D	43179720	43179730	1	12	270.047	-	-	9	1	1	ZNF131|CCDS43313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF131|CCDS43313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	2	5	22	29	22	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355756	5	43597501	GT	G	480	PASS	-	-	-	-	-	Del	-	D	43597501	43597506	1	25	432.075	-	-	4	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	4	4	4	6	34	32	34	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355771	5	43710406	GT	G	360	PASS	NNT	CCDS3949.1	r.?	-	-	Del	downstream	D	43710406	43710414	1	12	324.056	-	-	7	1	1	NNT|CCDS3949.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NNT|CCDS3949.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	8	6	8	0	0	./.	1	5	1	7	4	39	4	39	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355778	5	43752886	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	43752886	43752890	1	16	320.444	-	-	3	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	3	5	3	35	40	35	41	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355790	5	43860703	CT	C	360	PASS	-	-	-	-	-	Del	-	D	43860703	43860712	1	15	323.454	-	-	8	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	2	4	2	18	19	18	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760355937	5	44591964	TA	T	300	PASS	-	-	-	-	-	Del	-	D	44591964	44591973	1	10	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	1	4	1	5	18	21	18	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356018	5	45122279	GT	G	300	PASS	-	-	-	-	-	Del	-	D	45122279	45122289	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	4	17	18	17	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356031	5	45194950	CA	C	360	PASS	-	-	-	-	-	Del	-	D	45194950	45194955	1	12	324.056	-	-	4	1	-	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	1	7	1	31	4	31	4	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356078	5	45580545	GA	G	292	PASS	HCN1	CCDS3952.1	r.?	-	-	Del	intronic	D	45580545	45580553	1	10	270.047	-	-	7	1	1	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	1	4	2	5	20	27	20	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356138	5	45957328	GA	G	660	PASS	-	-	-	-	-	Del	-	D	45957328	45957334	1	40	594.103	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	7	4	8	6	36	35	36	35	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356280	5	49635983	TAA	T	420	PASS	-	-	-	-	-	Del	-	D	49635983	49635987	2	20	378.066	-	-	3	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	3	4	5	4	19	31	19	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356400	5	50151001	GA	G	300	PASS	-	-	-	-	-	Del	-	D	50151001	50151007	1	12	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	4	31	30	31	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356505	5	50573934	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	50573934	50573943	1	16	319.842	-	-	8	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	3	4	4	8	26	8	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356641	5	51139162	CT	C	358	PASS	-	-	-	-	-	Del	-	D	51139162	51139172	1	20	378.066	-	-	9	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	3	4	5	4	29	20	29	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356758	5	51616770	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	51616770	51616775	1	7	320.444	-	-	4	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	6	0	7	0	25	4	25	5	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356786	5	51746949	GT	G	360	PASS	-	-	-	-	-	Del	-	D	51746949	51746959	1	16	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	3	3	14	19	14	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356837	5	51935925	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	51935925	51935932	1	20	373.851	-	-	6	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	3	4	19	27	19	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760356904	5	52142243	GA	G	300	PASS	ITGA1	CCDS3955.1	r.?	-	-	Del	intronic	D	52142243	52142253	1	12	264.628	-	-	9	1	1	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	3	2	4	11	22	11	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760357203	5	53173357	CT	C	360	PASS	-	-	-	-	-	Del	-	D	53173357	53173366	1	7	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	0	6	0	6	27	30	27	30	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760357276	5	53370514	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	53370514	53370522	2	15	324.056	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	4	3	5	6	24	6	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760357611	5	54464506	TA	T	269	PASS	GPX8	CCDS34156.1	r.?	-	-	Del	downstream	D	54464506	54464513	1	12	270.047	-	-	6	1	1	GPX8|CCDS34156.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CDC20B|CCDS3966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	2	4	2	15	14	15	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760357787	5	54837733	TA	T	300	PASS	-	-	-	-	-	Del	-	D	54837733	54837742	1	6	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	0	5	1	6	7	29	7	29	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760357953	5	55239598	GA	G	329	PASS	IL6ST	CCDS3971.1	r.?	-	-	Del	intronic	D	55239598	55239608	1	15	322.852	-	-	9	1	1	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL6ST|CCDS3971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	2	4	5	4	31	23	31	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358050	5	55445563	GT	G	360	PASS	ANKRD55	CCDS34161.1	r.?	-	-	Del	intronic	D	55445563	55445573	1	16	323.454	-	-	9	1	1	ANKRD55|CCDS34161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD55|CCDS34161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	5	19	30	19	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358191	5	55852303	CAGA	C	360	PASS	ENSG00000225940	ENST00000438651	r.?	-	-	Del	intronic	D	55852303	55852309	3	7	324.056	-	-	1	1	1	ENSG00000225940|ENST00000438651|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000225940|ENST00000438651|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	0	6	0	6	27	28	27	28	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358233	5	55967912	AAAT	A	300	PASS	-	-	-	-	-	Del	-	D	55967912	55967924	3	12	270.047	-	-	3	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	2	4	13	16	13	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358570	5	56895089	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	56895089	56895099	1	24	426.657	-	-	9	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	3	5	5	8	35	30	35	30	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358633	5	57134916	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	57134916	57134924	1	30	587.481	-	-	7	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	9	2	11	3	30	3	30	2	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358851	5	57901060	G	GT	420	PASS	RAB3C	CCDS3976.1	r.?	-	-	Ins	intronic	I	57901060	57901068	1	20	373.851	-	-	7	1	1	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	4	3	5	22	25	22	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760358958	5	58244369	AT	A	780	PASS	-	-	-	-	-	Del	-	D	58244369	58244376	1	56	700.918	-	-	6	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	6	7	6	7	33	25	33	25	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359049	5	58484377	TA	T	360	PASS	PDE4D	CCDS47213.1	r.?	-	-	Del	intronic	D	58484377	58484387	1	15	324.056	-	-	9	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	6	3	30	30	30	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359176	5	58991435	AT	A	600	PASS	PDE4D	CCDS47213.1	r.?	-	-	Del	intronic	D	58991435	58991444	1	35	537.686	-	-	8	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	6	4	6	24	30	24	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359222	5	59173698	CA	C	269	PASS	PDE4D	CCDS47213.1	r.?	-	-	Del	intronic	D	59173698	59173706	1	12	270.047	-	-	7	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	4	4	27	22	27	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359265	5	59326290	C	CA	269	PASS	PDE4D	CCDS47032.1	r.?	-	-	Ins	intronic	I	59326290	59326298	1	12	264.026	-	-	7	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	18	11	0	0	./.	2	3	2	4	12	26	12	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359289	5	59442531	CA	C	300	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59442531	59442538	1	10	270.047	-	-	6	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	4	1	24	23	24	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359400	5	59980793	CA	C	360	PASS	DEPDC1B	CCDS3977.1	r.?	-	-	Del	intronic	D	59980793	59980801	1	12	324.056	-	-	7	1	1	DEPDC1B|CCDS3977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DEPDC1B|CCDS3977.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	5	1	7	2	24	16	24	16	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359508	5	60489497	AT	A	420	PASS	-	-	-	-	-	Del	-	D	60489497	60489505	1	20	375.055	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	4	4	4	15	34	15	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359509	5	60508295	TA	T	300	PASS	-	-	-	-	-	Del	-	D	60508295	60508304	1	12	267.037	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	2	4	3	24	26	24	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359681	5	61216541	AT	A	420	PASS	-	-	-	-	-	Del	-	D	61216541	61216549	1	18	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	5	3	5	28	25	28	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359751	5	61527832	AC	A	480	PASS	-	-	-	-	-	Del	-	D	61527832	61527838	1	21	432.075	-	-	5	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	6	3	7	7	29	7	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359891	5	61906589	CT	C	480	PASS	IPO11	CCDS34167.1	r.?	-	-	Del	intronic	D	61906589	61906599	1	24	431.473	-	-	9	1	1	IPO11|CCDS34167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IPO11|CCDS34167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	3	5	3	6	26	27	26	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359893	5	61919870	G	GT	366	PASS	IPO11	CCDS34167.1	r.?	-	-	Ins	intronic	I	61919870	61919879	1	18	373.851	-	-	8	1	1	IPO11|CCDS34167.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IPO11|CCDS34167.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	12	20	12	0	0	./.	5	2	7	2	21	26	21	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760359915	5	61993762	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	61993762	61993771	1	20	373.851	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	4	4	6	33	33	33	33	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360104	5	62732988	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	62732988	62732998	1	15	320.444	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	4	4	4	25	12	25	12	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360131	5	62807073	TA	T	352	PASS	-	-	-	-	-	Del	-	D	62807073	62807079	1	16	324.056	-	-	5	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	4	4	33	23	33	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360249	5	63310103	CA	C	540	PASS	-	-	-	-	-	Del	-	D	63310103	63310113	1	30	486.085	-	-	9	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	4	5	4	23	22	23	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360286	5	63585694	G	GT	360	PASS	RNF180	CCDS47219.1	r.?	-	-	Ins	intronic	I	63585694	63585703	1	12	320.444	-	-	8	1	1	RNF180|CCDS47219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF180|CCDS47219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	5	1	7	2	35	20	35	20	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360339	5	63827790	GT	G	480	PASS	RGS7BP	CCDS34170.1	r.?	-	-	Del	intronic	D	63827790	63827800	1	21	432.075	-	-	9	1	1	RGS7BP|CCDS34170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7BP|CCDS34170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	6	2	7	5	36	22	36	22	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360347	5	63841981	AAAAAC	A	269	PASS	RGS7BP	CCDS34170.1	r.?	-	-	Del	intronic	D	63841981	63842011	5	10	270.047	-	-	5	1	-	RGS7BP|CCDS34170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7BP|CCDS34170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	1	4	1	4	21	24	21	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360372	5	63933693	A	AG	329	PASS	-	-	-	-	-	Ins	-	I	63933693	63933700	1	16	319.842	-	-	6	1	1	-	-	./.	0	0	0	0	17	15	17	16	0	0	./.	3	3	5	2	21	36	21	36	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360477	5	64213861	GA	G	300	PASS	CWC27	CCDS3982.2	r.?	-	-	Del	intronic	D	64213861	64213871	1	12	258.608	-	-	9	1	1	CWC27|CCDS3982.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CWC27|CCDS3982.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	2	3	2	5	13	24	13	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360514	5	64331099	CCT	C	420	PASS	-	-	-	-	-	Del	-	D	64331099	64331109	2	18	372.647	-	-	4	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	5	5	6	27	27	27	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360562	5	64625848	AT	A	360	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Del	intronic	D	64625848	64625857	1	12	324.056	-	-	8	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	1	6	1	15	8	15	8	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360569	5	64665289	CT	C	360	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Del	intronic	D	64665289	64665299	1	16	324.056	-	-	9	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	3	3	3	4	9	36	9	36	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360597	5	64796664	AT	A	358	PASS	-	-	-	-	-	Del	-	D	64796664	64796671	1	20	371.443	-	-	6	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	3	7	4	31	29	31	29	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360617	5	64830345	C	CA	600	PASS	CENPK	CCDS3984.1	r.?	-	-	Ins	intronic	I	64830345	64830353	1	20	534.073	-	-	7	1	1	CENPK|CCDS3984.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CENPK|CCDS3984.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	9	1	11	1	38	21	38	21	11	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360656	5	64980388	CT	C	420	PASS	SGTB	CCDS3988.1	r.?	-	-	Del	intronic	D	64980388	64980398	1	18	378.066	-	-	9	1	1	SGTB|CCDS3988.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGTB|CCDS3988.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	5	4	5	31	25	31	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360841	5	65633226	TC	T	300	PASS	AC092373.1	ENST00000510964	r.?	-	-	Del	intronic	D	65633226	65633235	1	12	270.047	-	-	8	1	1	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	4	4	25	26	25	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360860	5	65750580	GT	G	300	PASS	AC092373.1	ENST00000510964	r.?	-	-	Del	intronic	D	65750580	65750588	1	10	270.047	-	-	7	1	1	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	1	5	5	21	29	21	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760360871	5	65768808	CT	C	480	PASS	AC092373.1	ENST00000510964	r.?	-	-	Del	intronic	D	65768808	65768818	1	25	432.075	-	-	9	1	1	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	4	4	6	5	43	35	43	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361100	5	66363558	TA	T	480	PASS	MAST4	CCDS47225.1	r.?	-	-	Del	intronic	D	66363558	66363568	1	25	432.075	-	-	9	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	4	6	5	27	25	27	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361236	5	66873984	GA	G	420	PASS	-	-	-	-	-	Del	-	D	66873984	66873994	1	20	374.453	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	3	5	6	19	27	19	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361242	5	66884254	CA	C	600	PASS	-	-	-	-	-	Del	-	D	66884254	66884262	1	32	540.094	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	7	3	7	25	23	25	23	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361276	5	66996230	CT	C	780	PASS	-	-	-	-	-	Del	-	D	66996230	66996239	1	50	700.316	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	9	4	11	31	32	31	32	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361424	5	67579852	GA	G	420	PASS	PIK3R1	CCDS3993.1	r.?	-	-	Del	intronic	D	67579852	67579861	1	20	378.066	-	-	8	1	1	PIK3R1|CCDS3993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3R1|CCDS3993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	3	6	32	30	32	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361506	5	67883230	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	67883230	67883239	1	30	480.666	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	5	4	5	30	28	30	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361591	5	68162150	CA	C	300	PASS	-	-	-	-	-	Del	-	D	68162150	68162160	1	12	267.037	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	3	5	21	30	21	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361612	5	68280395	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	68280395	68280402	1	10	267.037	-	-	6	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	1	4	2	26	22	26	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361742	5	68460216	CAT	C	300	PASS	CCNB1	CCDS3997.1	r.?	-	-	Del	upstream	D	68460216	68460221	2	10	270.047	-	-	2	1	1	CCNB1|CCDS3997.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CCNB1|CCDS3997.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	1	14	1	0	0	./.	4	1	5	2	26	4	26	4	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361755	5	68487888	AT	A	360	PASS	CENPH	CCDS3998.1	r.?	-	-	Del	intronic	D	68487888	68487897	1	15	324.056	-	-	8	1	1	CENPH|CCDS3998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPH|CCDS3998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	5	2	18	14	18	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361869	5	68683103	TA	T	300	PASS	RAD17	CCDS4004.1	r.?	-	-	Del	intronic	D	68683103	68683113	1	12	270.047	-	-	9	1	1	RAD17|CCDS4004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAD17|CCDS4004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	3	5	26	27	26	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760361941	5	68790399	CT	C	420	PASS	OCLN	CCDS4006.1	r.?	-	-	Del	intronic	D	68790399	68790409	1	20	377.464	-	-	9	1	1	OCLN|CCDS4006.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OCLN|CCDS4006.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	5	4	27	22	27	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362231	5	71120804	GT	G	300	PASS	-	-	-	-	-	Del	-	D	71120804	71120813	1	6	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	0	8	0	30	5	30	5	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362268	5	71216856	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	71216856	71216864	1	20	373.851	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	4	5	23	25	23	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362614	5	72491220	GA	G	360	PASS	-	-	-	-	-	Del	-	D	72491220	72491230	1	16	321.046	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	3	4	3	19	27	19	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362658	5	72665735	GC	G	360	PASS	-	-	-	-	-	Del	-	D	72665735	72665741	1	16	324.056	-	-	5	1	1	-	-	./.	0	0	0	0	20	7	20	7	0	0	./.	3	3	5	4	23	17	23	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362718	5	72859797	GT	G	360	PASS	UTP15	CCDS34186.1	r.?	-	-	Del	upstream	D	72859797	72859799	1	16	324.056	-	-	1	1	1	UTP15|CCDS34186.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ANKRA2|CCDS4020.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	3	3	4	5	34	24	34	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362918	5	73540289	TA	T	360	PASS	-	-	-	-	-	Del	-	D	73540289	73540297	1	15	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	4	2	22	9	22	9	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362944	5	73675338	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	73675338	73675345	1	18	373.851	-	-	6	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	5	2	6	2	21	26	21	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760362992	5	73806714	TA	T	360	PASS	-	-	-	-	-	Del	-	D	73806714	73806722	1	16	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363007	5	73839503	GA	G	300	PASS	-	-	-	-	-	Del	-	D	73839503	73839505	1	12	270.047	-	-	1	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	2	3	2	3	21	17	21	17	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363056	5	73976373	A	AT	420	PASS	HEXB	CCDS4022.1	r.?	-	-	Ins	upstream	I	73976373	73976379	1	18	373.851	-	-	5	1	1	HEXB|CCDS4022.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	HEXB|ENST00000511181|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	5	3	6	26	41	26	41	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363066	5	74012566	A	AT	360	PASS	GFM2	CCDS4023.1	r.?	-	-	Ins	downstream	I	74012566	74012573	1	15	320.444	-	-	6	1	1	GFM2|CCDS4023.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HEXB|CCDS4022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	11	11	0	0	./.	4	2	4	3	32	26	32	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363073	5	74057973	C	CA	300	PASS	GFM2	CCDS4023.1	r.?	-	-	Ins	intronic	I	74057973	74057983	1	12	267.037	-	-	9	1	1	GFM2|CCDS4023.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GFM2|CCDS4023.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	14	0	0	./.	3	2	3	5	26	31	27	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363086	5	74135163	TG	T	360	PASS	FAM169A	CCDS43330.1	r.?	-	-	Del	intronic	D	74135163	74135171	1	15	324.056	-	-	7	1	1	FAM169A|CCDS43330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM169A|CCDS43330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	4	2	6	2	20	20	20	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363093	5	74162533	CG	C	360	PASS	FAM169A	CCDS43330.1	r.?	-	-	Del	intronic	D	74162533	74162539	1	16	324.056	-	-	5	1	1	FAM169A|CCDS43330.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM169A|CCDS43330.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	3	3	4	5	30	30	30	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363141	5	74334897	GT	G	420	PASS	-	-	-	-	-	Del	-	D	74334897	74334907	1	20	378.066	-	-	9	1	-	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	3	4	4	25	22	25	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363169	5	74508827	C	CA	720	PASS	ANKRD31	CCDS47233.1	r.?	-	-	Ins	intronic	I	74508827	74508834	1	48	640.888	-	-	6	1	1	ANKRD31|CCDS47233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD31|CCDS47233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	10	0	0	./.	5	7	5	7	31	29	31	29	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363217	5	74754818	CT	C	300	PASS	COL4A3BP	CCDS47235.1	r.?	-	-	Del	intronic	D	74754818	74754828	1	10	270.047	-	-	9	1	1	COL4A3BP|CCDS47235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A3BP|CCDS47235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	5	2	22	12	22	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363219	5	74787337	CA	C	360	PASS	COL4A3BP	CCDS47235.1	r.?	-	-	Del	intronic	D	74787337	74787347	1	15	324.056	-	-	9	1	1	COL4A3BP|CCDS47235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A3BP|CCDS47235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	4	4	7	30	28	30	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363256	5	74985877	AT	A	300	PASS	C5orf37	CCDS47236.1	r.?	-	-	Del	intronic	D	74985877	74985885	1	6	270.047	-	-	7	1	1	C5orf37|CCDS47236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf37|CCDS47236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	5	0	5	0	17	4	17	4	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363268	5	75060535	GT	G	300	PASS	-	-	-	-	-	Del	-	D	75060535	75060544	1	6	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	0	5	0	28	3	28	3	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363308	5	75291747	GA	G	339	PASS	-	-	-	-	-	Del	-	D	75291747	75291755	1	20	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	3	4	3	6	23	18	23	18	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363353	5	75510835	CT	C	300	PASS	SV2C	ENST00000502798	r.?	-	-	Del	intronic	D	75510835	75510843	1	10	270.047	-	-	7	1	1	SV2C|ENST00000502798|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SV2C|ENST00000502798|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	1	4	4	5	25	28	25	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363411	5	75671071	AC	A	389	PASS	-	-	-	-	-	Del	-	D	75671071	75671078	1	18	378.066	-	-	6	1	1	-	-	./.	0	0	0	0	4	8	4	9	0	0	./.	2	5	5	5	28	28	28	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363482	5	75828180	GA	G	360	PASS	IQGAP2	CCDS34188.1	r.?	-	-	Del	intronic	D	75828180	75828189	1	16	324.056	-	-	8	1	1	IQGAP2|CCDS34188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQGAP2|CCDS34188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	4	3	17	25	17	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363542	5	76011232	CG	C	300	PASS	F2R	CCDS4032.1	r.?	-	-	Del	upstream	D	76011232	76011240	1	12	265.833	-	-	7	1	1	F2R|CCDS4032.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	F2R|CCDS4032.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	5	3	25	16	25	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363817	5	76872965	G	GA	300	PASS	WDR41	ENST00000509971	r.?	-	-	Ins	intronic	I	76872965	76872973	1	10	267.037	-	-	7	1	1	WDR41|ENST00000509971|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR41|ENST00000509971|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	1	4	3	17	21	17	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363826	5	76892292	GA	G	420	PASS	WDR41	ENST00000509971	r.?	-	-	Del	intronic	D	76892292	76892301	1	18	378.066	-	-	8	1	1	WDR41|ENST00000509971|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR41|ENST00000509971|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	19	3	19	0	0	./.	5	2	5	6	33	29	33	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363869	5	77066563	GAA	G	420	PASS	TBCA	CCDS4040.1	r.?	-	-	Del	intronic	D	77066563	77066572	2	20	378.066	-	-	8	1	1	TBCA|CCDS4040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBCA|CCDS4040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	4	1	0	28	21	28	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363891	5	77121319	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	77121319	77121329	1	20	371.443	-	-	9	1	1	-	-	./.	0	0	0	0	9	18	9	19	0	0	./.	4	3	5	4	25	23	25	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760363935	5	77259697	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	77259697	77259706	1	7	320.444	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	0	6	3	25	32	25	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760364007	5	77504919	TAC	T	360	PASS	AP3B1	CCDS4041.1	r.?	-	-	Del	intronic	D	77504919	77504938	2	15	322.25	-	-	9	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	5	2	34	7	34	7	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760364010	5	77533637	CA	C	300	PASS	AP3B1	CCDS4041.1	r.?	-	-	Del	intronic	D	77533637	77533647	1	10	269.445	-	-	9	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	1	4	1	4	25	20	25	20	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760364309	5	78346898	CT	C	300	PASS	DMGDH	CCDS4044.1	r.?	-	-	Del	intronic	D	78346898	78346906	1	12	270.047	-	-	7	1	1	DMGDH|CCDS4044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMGDH|CCDS4044.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	5	4	27	21	27	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760364593	5	79283947	GT	G	329	PASS	MTX3	ENST00000430564	r.?	-	-	Del	intronic	D	79283947	79283956	1	15	324.056	-	-	8	1	1	MTX3|ENST00000430564|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTX3|ENST00000430564|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	4	6	35	32	35	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760364863	5	79980744	GT	G	329	PASS	MSH3	CCDS34195.1	r.?	-	-	Del	intronic	D	79980744	79980754	1	15	324.056	-	-	9	1	1	MSH3|CCDS34195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSH3|CCDS34195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	4	2	5	19	15	19	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760364982	5	80264676	AT	A	269	PASS	RASGRF2	CCDS4052.1	r.?	-	-	Del	intronic	D	80264676	80264686	1	12	270.047	-	-	9	1	1	RASGRF2|CCDS4052.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASGRF2|CCDS4052.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	3	2	17	27	17	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365104	5	80651873	AC	A	360	PASS	ACOT12	CCDS4055.1	r.?	-	-	Del	intronic	D	80651873	80651880	1	12	321.648	-	-	6	1	1	ACOT12|CCDS4055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOT12|CCDS4055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	1	6	22	33	22	33	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365335	5	81506440	A	AT	360	PASS	ATG10	CCDS4057.1	r.?	-	-	Ins	intronic	I	81506440	81506450	1	15	320.444	-	-	9	1	1	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	2	8	3	20	25	20	26	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365407	5	81754098	CA	C	360	PASS	-	-	-	-	-	Del	-	D	81754098	81754106	1	7	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	6	0	8	0	32	4	32	4	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365446	5	81916624	CA	C	480	PASS	-	-	-	-	-	Del	-	D	81916624	81916633	1	24	432.075	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	6	3	23	31	23	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365448	5	81918662	CA	C	420	PASS	-	-	-	-	-	Del	-	D	81918662	81918671	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	3	4	4	34	18	34	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365456	5	81953446	CT	C	300	PASS	-	-	-	-	-	Del	-	D	81953446	81953454	1	12	270.047	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	2	5	24	24	24	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365488	5	82028279	CA	C	329	PASS	-	-	-	-	-	Del	-	D	82028279	82028289	1	16	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	4	4	26	25	26	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365505	5	82071363	GA	G	300	PASS	-	-	-	-	-	Del	-	D	82071363	82071373	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	4	1	5	3	28	25	28	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365562	5	82220637	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	82220637	82220644	1	12	313.821	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	1	5	5	6	26	27	27	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365602	5	82380173	CT	C	420	PASS	XRCC4	CCDS4058.1	r.?	-	-	Del	intronic	D	82380173	82380179	1	18	378.066	-	-	5	1	1	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	5	3	6	25	23	25	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365714	5	82676593	GA	G	360	PASS	-	-	-	-	-	Del	-	D	82676593	82676602	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	4	3	31	28	31	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365831	5	83040800	CAGA	C	600	PASS	-	-	-	-	-	Del	-	D	83040800	83040806	3	32	540.094	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	7	3	8	3	30	31	30	31	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760365905	5	83360953	C	CT	420	PASS	EDIL3	CCDS4062.1	r.?	-	-	Ins	intronic	I	83360953	83360961	1	20	373.851	-	-	7	1	1	EDIL3|CCDS4062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDIL3|CCDS4062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	3	4	4	4	18	29	18	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366130	5	84259945	T	TA	449	PASS	-	-	-	-	-	Ins	-	I	84259945	84259955	1	24	427.259	-	-	9	1	1	-	-	./.	0	0	0	0	19	14	20	14	0	0	./.	5	3	7	5	28	16	28	16	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366204	5	84466614	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	84466614	84466623	1	20	373.249	-	-	8	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	4	3	7	3	27	19	28	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366575	5	85523359	AT	A	300	PASS	-	-	-	-	-	Del	-	D	85523359	85523369	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	6	2	19	4	19	4	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366751	5	86101125	AG	A	300	PASS	-	-	-	-	-	Del	-	D	86101125	86101134	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	3	5	20	18	20	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366823	5	86399901	AT	A	360	PASS	-	-	-	-	-	Del	-	D	86399901	86399910	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	4	2	4	2	21	10	21	10	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366902	5	86761082	CT	C	360	PASS	-	-	-	-	-	Del	-	D	86761082	86761091	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	2	4	3	5	27	16	27	16	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366912	5	86828467	TA	T	480	PASS	-	-	-	-	-	Del	-	D	86828467	86828472	1	21	431.473	-	-	4	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	6	4	7	22	27	22	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366924	5	87009138	GA	G	540	PASS	-	-	-	-	-	Del	-	D	87009138	87009148	1	28	486.085	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	3	10	3	27	14	27	14	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366966	5	87241120	CT	C	360	PASS	-	-	-	-	-	Del	-	D	87241120	87241130	1	15	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	5	6	29	19	29	19	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366976	5	87283263	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	87283263	87283273	1	6	267.037	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	0	5	0	5	4	25	4	26	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760366985	5	87314636	GA	G	300	PASS	-	-	-	-	-	Del	-	D	87314636	87314646	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	1	5	2	34	19	34	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367012	5	87459069	CT	C	360	PASS	-	-	-	-	-	Del	-	D	87459069	87459079	1	15	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	4	2	5	3	24	19	24	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367029	5	87512027	CACA	C	300	PASS	TMEM161B	CCDS4065.1	r.?	-	-	Del	intronic	D	87512027	87512036	3	10	270.047	-	-	2	1	1	TMEM161B|CCDS4065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM161B|CCDS4065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	4	1	35	21	35	21	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367067	5	87835374	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	87835374	87835382	1	12	265.833	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	5	5	35	26	35	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367179	5	88313003	AT	A	360	PASS	-	-	-	-	-	Del	-	D	88313003	88313012	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	4	2	4	2	15	24	15	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367263	5	88788047	CA	C	420	PASS	-	-	-	-	-	Del	-	D	88788047	88788055	1	14	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	1	6	1	6	19	27	19	27	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367285	5	88867712	TA	T	420	PASS	-	-	-	-	-	Del	-	D	88867712	88867720	1	14	377.464	-	-	7	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	6	1	8	2	26	16	26	16	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367436	5	89498894	CA	C	300	PASS	-	-	-	-	-	Del	-	D	89498894	89498903	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	3	2	4	3	20	28	20	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367437	5	89501879	CAAA	C	300	PASS	-	-	-	-	-	Del	-	D	89501879	89501883	3	10	270.047	-	-	3	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	4	1	7	2	25	20	25	20	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367446	5	89555725	CT	C	360	PASS	-	-	-	-	-	Del	-	D	89555725	89555735	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	5	1	5	16	24	16	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367538	5	89863992	GT	G	300	PASS	GPR98	CCDS47246.1	r.?	-	-	Del	intronic	D	89863992	89864000	1	12	270.047	-	-	7	1	1	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	2	4	15	14	15	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367615	5	90236815	CT	C	540	PASS	GPR98	CCDS47246.1	r.?	-	-	Del	intronic	D	90236815	90236822	1	30	486.085	-	-	6	1	1	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	5	4	5	6	24	37	24	37	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367679	5	90392440	AT	A	420	PASS	GPR98	CCDS47246.1	r.?	-	-	Del	intronic	D	90392440	90392450	1	18	378.066	-	-	9	1	1	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	5	2	6	3	21	27	21	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367824	5	90810030	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	90810030	90810037	1	32	534.073	-	-	6	1	1	-	-	./.	0	0	0	0	8	16	8	17	0	0	./.	7	3	7	3	26	24	26	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367929	5	91411736	AT	A	360	PASS	-	-	-	-	-	Del	-	D	91411736	91411745	1	15	323.454	-	-	8	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	2	4	2	5	28	32	28	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367965	5	91604489	TC	T	420	PASS	-	-	-	-	-	Del	-	D	91604489	91604491	1	20	378.066	-	-	1	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	4	5	4	23	25	23	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367976	5	91720487	CT	C	300	PASS	-	-	-	-	-	Del	-	D	91720487	91720496	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	3	3	20	27	20	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760367995	5	91773851	CA	C	420	PASS	-	-	-	-	-	Del	-	D	91773851	91773860	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	4	3	6	4	15	26	15	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368068	5	92254707	GA	G	300	PASS	-	-	-	-	-	Del	-	D	92254707	92254717	1	6	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	0	5	0	6	0	23	0	23	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368071	5	92296347	TA	T	300	PASS	-	-	-	-	-	Del	-	D	92296347	92296356	1	10	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	1	5	1	11	21	11	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368080	5	92348071	GA	G	420	PASS	-	-	-	-	-	Del	-	D	92348071	92348077	1	20	378.066	-	-	5	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	4	4	4	25	17	25	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368115	5	92542365	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	92542365	92542370	1	12	267.037	-	-	4	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	2	3	5	10	27	10	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368135	5	92614115	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	92614115	92614124	1	12	320.444	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	5	2	6	14	33	14	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368174	5	92802004	AT	A	329	PASS	-	-	-	-	-	Del	-	D	92802004	92802012	1	12	323.454	-	-	7	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	5	1	5	23	19	23	19	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368192	5	92896660	AT	A	300	PASS	-	-	-	-	-	Del	-	D	92896660	92896666	1	10	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	1	5	2	23	6	23	6	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368198	5	92921929	AT	A	480	PASS	NR2F1	CCDS4068.1	r.?	-	-	Del	intronic	D	92921929	92921938	1	25	432.075	-	-	8	1	1	NR2F1|CCDS4068.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR2F1|CCDS4068.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	4	5	23	29	23	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368212	5	92978398	AT	A	420	PASS	MIR2277	CCDS4069.1	r.?	-	-	Del	intronic	D	92978398	92978408	1	20	378.066	-	-	9	1	1	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	3	4	5	14	25	14	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368270	5	93298247	GA	G	300	PASS	MIR2277	CCDS4069.1	r.?	-	-	Del	intronic	D	93298247	93298256	1	10	268.843	-	-	8	1	1	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	4	2	21	23	21	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368303	5	93454666	TA	T	300	PASS	-	-	-	-	-	Del	-	D	93454666	93454676	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	2	4	2	30	22	30	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368310	5	93480803	GCAAA	G	300	PASS	-	-	-	-	-	Del	-	D	93480803	93480810	4	12	270.047	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	2	4	2	16	27	16	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368317	5	93514848	CA	C	480	PASS	C5orf36	ENST00000513200	r.?	-	-	Del	intronic	D	93514848	93514855	1	24	431.473	-	-	6	1	1	C5orf36|ENST00000513200|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf36|ENST00000513200|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	5	3	5	25	18	25	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368332	5	93654594	A	AT	540	PASS	C5orf36	ENST00000513200	r.?	-	-	Ins	intronic	I	93654594	93654602	1	28	480.666	-	-	7	1	1	C5orf36|ENST00000513200|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C5orf36|ENST00000513200|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	6	3	6	5	27	31	27	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368396	5	94023236	TA	T	360	PASS	ANKRD32	CCDS4071.2	r.?	-	-	Del	intronic	D	94023236	94023245	1	16	324.056	-	-	8	1	1	ANKRD32|CCDS4071.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD32|CCDS4071.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	3	3	5	3	22	10	22	10	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368502	5	94369917	GA	G	300	PASS	MCTP1	CCDS47247.1	r.?	-	-	Del	intronic	D	94369917	94369927	1	10	270.047	-	-	9	1	1	MCTP1|CCDS47247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP1|CCDS47247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	1	4	2	6	12	21	12	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368521	5	94445946	CT	C	540	PASS	MCTP1	ENST00000515393	r.?	-	-	Del	intronic	D	94445946	94445955	1	28	484.278	-	-	8	1	1	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	6	4	6	22	24	22	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368557	5	94616354	AT	A	300	PASS	MCTP1	ENST00000515393	r.?	-	-	Del	intronic	D	94616354	94616364	1	10	270.047	-	-	9	1	1	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	1	5	1	32	7	32	7	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368613	5	94868676	GA	G	420	PASS	TTC37	CCDS4072.1	r.?	-	-	Del	intronic	D	94868676	94868684	1	18	378.066	-	-	7	1	1	TTC37|CCDS4072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC37|CCDS4072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	2	8	2	26	12	26	12	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368725	5	95431523	TA	T	480	PASS	-	-	-	-	-	Del	-	D	95431523	95431533	1	21	432.075	-	-	9	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	6	2	6	2	40	9	40	9	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368750	5	95588776	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	95588776	95588784	1	21	427.259	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	2	6	2	38	16	38	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368771	5	95708718	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	95708718	95708728	1	20	373.851	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	3	6	4	29	23	29	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368775	5	95721880	A	AT	420	PASS	PCSK1	CCDS4081.1	r.?	-	-	Ins	downstream	I	95721880	95721890	1	20	373.851	-	-	9	1	1	PCSK1|CCDS4081.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PCSK1|CCDS4081.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	10	9	11	0	0	./.	3	4	5	4	21	27	22	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368809	5	95816970	TA	T	360	PASS	-	-	-	-	-	Del	-	D	95816970	95816979	1	15	321.648	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	4	2	5	15	27	15	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760368812	5	95824071	TA	T	300	PASS	-	-	-	-	-	Del	-	D	95824071	95824081	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	5	3	24	20	24	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369087	5	96494222	TG	T	480	PASS	RIOK2	CCDS4089.1	r.?	-	-	Del	downstream	D	96494222	96494228	1	25	432.075	-	-	5	1	1	RIOK2|CCDS4089.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000251606|ENST00000509481|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	4	4	6	5	22	33	22	33	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369226	5	96869206	TA	T	420	PASS	-	-	-	-	-	Del	-	D	96869206	96869215	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	4	3	4	5	26	27	26	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369271	5	97136909	AT	A	360	PASS	-	-	-	-	-	Del	-	D	97136909	97136919	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	1	5	1	30	4	30	4	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369391	5	97459516	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	97459516	97459519	1	24	425.452	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	5	4	7	26	33	27	34	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369426	5	97601980	AT	A	300	PASS	-	-	-	-	-	Del	-	D	97601980	97601986	1	12	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	4	2	23	25	23	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369485	5	97854485	C	CAT	300	PASS	-	-	-	-	-	Ins	-	I	97854485	97854496	2	12	264.026	-	-	5	1	1	-	-	./.	0	0	0	0	12	19	14	19	0	0	./.	3	2	3	4	13	22	13	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369487	5	97862974	AT	A	420	PASS	-	-	-	-	-	Del	-	D	97862974	97862983	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	3	5	4	24	28	24	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369508	5	97909115	GT	G	360	PASS	-	-	-	-	-	Del	-	D	97909115	97909124	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	2	5	4	13	22	13	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369670	5	98557758	TC	T	720	PASS	-	-	-	-	-	Del	-	D	98557758	98557765	1	45	648.113	-	-	6	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	4	8	5	10	25	26	25	26	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369790	5	98950475	TA	T	540	PASS	-	-	-	-	-	Del	-	D	98950475	98950485	1	30	484.88	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	5	5	6	30	34	30	34	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369854	5	99149779	CA	C	360	PASS	-	-	-	-	-	Del	-	D	99149779	99149788	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	4	2	4	2	10	19	10	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760369939	5	99608452	CA	C	360	PASS	-	-	-	-	-	Del	-	D	99608452	99608462	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	1	5	4	7	21	31	21	31	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370225	5	100890953	CA	C	336	PASS	-	-	-	-	-	Del	-	D	100890953	100890963	1	15	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	2	5	3	39	27	39	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370365	5	101394898	CA	C	480	PASS	-	-	-	-	-	Del	-	D	101394898	101394907	1	21	430.871	-	-	8	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	6	2	7	24	21	24	21	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370374	5	101419241	CA	C	480	PASS	-	-	-	-	-	Del	-	D	101419241	101419250	1	24	430.871	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	4	5	17	32	17	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370685	5	102725903	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	102725903	102725919	2	15	324.056	-	-	7	1	-	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	2	6	3	26	27	26	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370889	5	103350082	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	103350082	103350091	1	12	267.037	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	3	4	27	22	27	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370947	5	103583688	TA	T	300	PASS	-	-	-	-	-	Del	-	D	103583688	103583698	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	3	2	3	2	13	21	13	21	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760370952	5	103606907	AT	A	420	PASS	-	-	-	-	-	Del	-	D	103606907	103606917	1	18	378.066	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	2	5	2	27	20	27	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371023	5	103870867	CT	C	300	PASS	-	-	-	-	-	Del	-	D	103870867	103870876	1	10	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	1	4	2	5	29	31	29	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371129	5	104402351	CA	C	360	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Del	intronic	D	104402351	104402361	1	16	324.056	-	-	9	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	5	5	28	28	28	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371130	5	104406595	TA	T	300	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Del	intronic	D	104406595	104406602	1	6	270.047	-	-	6	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	0	5	1	6	3	33	3	33	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371293	5	105167186	CT	C	360	PASS	-	-	-	-	-	Del	-	D	105167186	105167196	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	5	1	6	24	22	24	22	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371308	5	105235729	CA	C	300	PASS	-	-	-	-	-	Del	-	D	105235729	105235739	1	6	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	0	5	0	6	4	32	4	32	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371330	5	105396279	CT	C	420	PASS	-	-	-	-	-	Del	-	D	105396279	105396287	1	18	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	5	2	6	2	23	26	23	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371388	5	105643244	TC	T	360	PASS	-	-	-	-	-	Del	-	D	105643244	105643249	1	7	324.056	-	-	4	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	0	6	0	7	1	34	1	34	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371417	5	105805036	AT	A	480	PASS	-	-	-	-	-	Del	-	D	105805036	105805045	1	21	432.075	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	6	2	8	2	21	23	21	23	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371528	5	106203082	TA	T	480	PASS	-	-	-	-	-	Del	-	D	106203082	106203092	1	24	432.075	-	-	9	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	5	3	6	7	28	25	28	25	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371633	5	106529153	AT	A	300	PASS	-	-	-	-	-	Del	-	D	106529153	106529163	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	4	3	30	21	30	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371634	5	106531166	G	GA	276	PASS	-	-	-	-	-	Ins	-	I	106531166	106531176	1	10	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	1	5	1	25	18	25	18	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371770	5	107009629	TAA	T	480	PASS	EFNA5	CCDS4097.1	r.?	-	-	Del	upstream	D	107009629	107009633	2	21	429.667	-	-	3	1	1	EFNA5|CCDS4097.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EFNA5|CCDS4097.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	9	13	9	0	0	./.	2	6	3	7	31	39	31	39	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371794	5	107071466	AG	A	300	PASS	-	-	-	-	-	Del	-	D	107071466	107071468	1	12	268.241	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	4	3	34	28	34	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371799	5	107084897	CT	C	300	PASS	-	-	-	-	-	Del	-	D	107084897	107084903	1	12	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	3	5	20	19	20	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371890	5	107439279	CA	C	300	PASS	FBXL17	ENST00000359660	r.?	-	-	Del	intronic	D	107439279	107439289	1	12	269.445	-	-	9	1	1	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	6	2	27	13	27	13	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760371996	5	107853475	CT	C	269	PASS	-	-	-	-	-	Del	-	D	107853475	107853484	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	2	5	2	34	25	34	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372058	5	108028141	AT	A	300	PASS	-	-	-	-	-	Del	-	D	108028141	108028147	1	10	269.445	-	-	5	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	4	1	5	7	29	7	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372170	5	108429610	CT	C	360	PASS	FER	CCDS4098.1	r.?	-	-	Del	intronic	D	108429610	108429619	1	15	323.454	-	-	8	1	1	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	5	2	21	13	21	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372195	5	108525355	CT	C	360	PASS	FER	CCDS4098.1	r.4933delU	c.?	p.?	Del	3'UTR variant	D	108525355	108525364	1	12	324.056	-	-	8	1	1	FER|CCDS4098.1|r.4933delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FER|CCDS4098.1|r.4933delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	14	11	14	0	0	./.	1	5	2	6	19	31	19	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372261	5	108803643	CA	C	360	PASS	-	-	-	-	-	Del	-	D	108803643	108803651	1	16	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	4	5	25	35	25	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372451	5	109525018	CT	C	300	PASS	-	-	-	-	-	Del	-	D	109525018	109525024	1	10	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	2	30	32	30	32	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372455	5	109554123	AT	A	360	PASS	-	-	-	-	-	Del	-	D	109554123	109554129	1	12	324.056	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	1	7	2	33	24	33	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372522	5	110050314	TAC	T	360	PASS	TMEM232	CCDS47253.1	r.?	-	-	Del	intronic	D	110050314	110050330	2	12	324.056	-	-	7	1	1	TMEM232|CCDS47253.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMEM232|CCDS47253.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	1	5	3	7	18	29	18	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372602	5	110443716	CA	C	660	PASS	WDR36	CCDS4102.1	r.?	-	-	Del	intronic	D	110443716	110443725	1	40	594.103	-	-	8	1	1	WDR36|CCDS4102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR36|CCDS4102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	4	7	6	7	26	26	26	26	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372677	5	110888014	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	110888014	110888020	1	18	373.851	-	-	5	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	5	3	5	32	20	32	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372764	5	111155917	CA	C	360	PASS	C5orf13	CCDS47255.1	r.?	-	-	Del	intronic	D	111155917	111155927	1	12	324.056	-	-	9	1	1	C5orf13|CCDS47255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf13|CCDS47255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	5	1	7	17	37	17	37	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372823	5	111486151	GA	G	540	PASS	EPB41L4A	ENST00000359109	r.?	-	-	Del	intronic	D	111486151	111486160	1	28	486.085	-	-	8	1	1	EPB41L4A|ENST00000359109|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPB41L4A|ENST00000359109|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	6	3	7	24	42	24	42	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760372963	5	112061480	CA	C	300	PASS	APC	CCDS4107.1	r.?	-	-	Del	intronic	D	112061480	112061488	1	12	268.241	-	-	7	1	1	APC|CCDS4107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APC|CCDS4107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	3	3	30	18	30	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373296	5	113043307	TA	T	600	PASS	-	-	-	-	-	Del	-	D	113043307	113043315	1	36	538.288	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	5	7	8	26	33	26	33	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373377	5	113377779	AT	A	300	PASS	-	-	-	-	-	Del	-	D	113377779	113377785	1	12	269.445	-	-	5	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	4	3	17	19	17	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373416	5	113553249	CA	C	540	PASS	-	-	-	-	-	Del	-	D	113553249	113553258	1	30	486.085	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	4	5	4	31	17	31	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373428	5	113574535	AT	A	360	PASS	-	-	-	-	-	Del	-	D	113574535	113574544	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	2	4	2	25	19	25	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373479	5	113692354	TA	T	300	PASS	KCNN2	ENST00000512097	r.?	-	-	Del	upstream	D	113692354	113692362	1	12	267.639	-	-	7	1	1	KCNN2|ENST00000512097|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KCNN2|ENST00000512097|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	4	3	18	24	18	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373565	5	114051994	AT	A	480	PASS	-	-	-	-	-	Del	-	D	114051994	114052002	1	24	431.473	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	5	4	5	30	15	30	15	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373609	5	114281305	CT	C	389	PASS	-	-	-	-	-	Del	-	D	114281305	114281312	1	20	378.066	-	-	6	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	4	3	4	4	26	18	26	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373936	5	115504734	CA	C	300	PASS	COMMD10	CCDS34215.1	r.?	-	-	Del	intronic	D	115504734	115504744	1	12	270.047	-	-	9	1	1	COMMD10|CCDS34215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COMMD10|CCDS34215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	6	2	23	20	23	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760373976	5	115749716	CA	C	420	PASS	-	-	-	-	-	Del	-	D	115749716	115749725	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	3	5	20	17	20	17	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374273	5	116547474	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	116547474	116547481	1	12	267.037	-	-	6	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	3	3	27	24	27	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374414	5	116971964	CA	C	360	PASS	-	-	-	-	-	Del	-	D	116971964	116971969	1	15	324.056	-	-	4	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	6	2	27	25	27	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374449	5	117072192	CT	C	600	PASS	-	-	-	-	-	Del	-	D	117072192	117072198	1	32	540.094	-	-	5	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	7	3	8	4	27	27	27	27	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374455	5	117082693	GA	G	300	PASS	-	-	-	-	-	Del	-	D	117082693	117082703	1	12	267.639	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	4	3	20	19	20	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374568	5	117495460	GA	G	420	PASS	-	-	-	-	-	Del	-	D	117495460	117495469	1	20	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	4	3	6	23	27	23	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374578	5	117523275	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	117523275	117523282	1	21	426.657	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	2	8	2	38	5	38	5	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374608	5	117599044	GC	G	600	PASS	-	-	-	-	-	Del	-	D	117599044	117599050	1	32	540.094	-	-	5	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	3	7	3	8	20	28	20	28	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374696	5	117840787	CA	C	480	PASS	ENSG00000232769	ENST00000428465	r.?	-	-	Del	intronic	D	117840787	117840793	1	24	432.075	-	-	5	1	1	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	5	3	5	3	25	22	25	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374837	5	118354493	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	118354493	118354503	1	10	267.037	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	4	1	28	28	28	28	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374900	5	118593761	CA	C	300	PASS	-	-	-	-	-	Del	-	D	118593761	118593768	1	12	268.843	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	3	2	25	23	25	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760374928	5	118677399	AT	A	420	PASS	TNFAIP8	CCDS47257.1	r.?	-	-	Del	intronic	D	118677399	118677409	1	20	378.066	-	-	9	1	1	TNFAIP8|CCDS47257.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNFAIP8|CCDS47257.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	5	5	25	24	25	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375046	5	119074659	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	119074659	119074666	1	12	267.037	-	-	6	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	2	3	3	7	33	29	33	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375048	5	119082246	C	CTG	420	PASS	-	-	-	-	-	Ins	-	I	119082246	119082261	2	20	369.637	-	-	7	1	-	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	5	5	36	27	36	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375052	5	119108416	TA	T	540	PASS	-	-	-	-	-	Del	-	D	119108416	119108425	1	24	486.085	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	2	8	2	29	20	29	20	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375067	5	119171829	GT	G	329	PASS	-	-	-	-	-	Del	-	D	119171829	119171837	1	15	319.842	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	4	2	5	17	23	17	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375145	5	119629052	AT	A	480	PASS	-	-	-	-	-	Del	-	D	119629052	119629062	1	21	431.473	-	-	9	1	1	-	-	./.	0	0	0	0	10	25	10	25	0	0	./.	6	2	7	2	24	23	24	23	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375156	5	119733227	TA	T	540	PASS	-	-	-	-	-	Del	-	D	119733227	119733236	1	28	486.085	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	6	4	8	8	27	8	27	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375172	5	119857047	AT	A	300	PASS	PRR16	CCDS4127.1	r.?	-	-	Del	intronic	D	119857047	119857054	1	12	270.047	-	-	6	1	1	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	4	15	21	15	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375184	5	119908730	AT	A	300	PASS	PRR16	CCDS4127.1	r.?	-	-	Del	intronic	D	119908730	119908738	1	12	270.047	-	-	7	1	1	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	5	4	25	16	25	16	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375376	5	120786144	TA	T	600	PASS	-	-	-	-	-	Del	-	D	120786144	120786152	1	36	540.094	-	-	7	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	5	5	5	5	27	29	27	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375455	5	121096283	GA	G	360	PASS	-	-	-	-	-	Del	-	D	121096283	121096290	1	12	321.648	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	1	5	1	21	5	21	5	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375477	5	121247968	GT	G	660	PASS	-	-	-	-	-	Del	-	D	121247968	121247976	1	36	594.103	-	-	7	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	8	3	9	4	32	13	32	13	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375536	5	121471343	CA	C	360	PASS	ZNF474	CCDS4130.1	r.?	-	-	Del	intronic	D	121471343	121471351	1	12	324.056	-	-	7	1	1	ZNF474|CCDS4130.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF474|CCDS4130.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	1	7	1	33	10	33	10	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375554	5	121611974	CA	C	454	PASS	-	-	-	-	-	Del	-	D	121611974	121611980	1	30	486.085	-	-	5	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	4	5	4	5	27	35	27	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375616	5	121876186	TA	T	480	PASS	-	-	-	-	-	Del	-	D	121876186	121876196	1	24	430.871	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	3	5	3	26	27	26	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375804	5	122336082	TATGA	T	507	PASS	SNX24	CCDS4132.1	r.?	-	-	Del	intronic	D	122336082	122336091	4	36	540.094	-	-	2	1	1	SNX24|CCDS4132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX24|CCDS4132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	5	5	6	5	19	16	19	16	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375905	5	122738191	G	GC	660	PASS	CEP120	CCDS4134.2	r.?	-	-	Ins	intronic	I	122738191	122738199	1	40	579.654	-	-	7	1	1	CEP120|CCDS4134.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP120|CCDS4134.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	7	6	9	29	37	29	38	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375927	5	122851340	G	GA	300	PASS	CSNK1G3	CCDS43355.1	r.?	-	-	Ins	intronic	I	122851340	122851350	1	6	267.037	-	-	9	1	1	CSNK1G3|CCDS43355.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CSNK1G3|CCDS43355.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	5	0	6	2	32	12	32	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375931	5	122865068	GT	G	660	PASS	CSNK1G3	CCDS43355.1	r.?	-	-	Del	intronic	D	122865068	122865076	1	40	594.103	-	-	7	1	1	CSNK1G3|CCDS43355.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CSNK1G3|CCDS43355.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	7	5	7	32	31	32	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375955	5	123005878	TA	T	360	PASS	-	-	-	-	-	Del	-	D	123005878	123005888	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	1	5	1	5	4	21	4	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760375981	5	123125201	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	123125201	123125205	1	35	534.073	-	-	3	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	6	6	6	30	22	30	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376117	5	123662326	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	123662326	123662333	1	24	427.259	-	-	6	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	8	4	34	23	34	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376288	5	124284446	GA	G	360	PASS	-	-	-	-	-	Del	-	D	124284446	124284454	1	16	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	3	3	28	35	28	35	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376332	5	124387349	GT	G	360	PASS	-	-	-	-	-	Del	-	D	124387349	124387357	1	15	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	4	5	24	25	24	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376403	5	124586286	AC	A	360	PASS	-	-	-	-	-	Del	-	D	124586286	124586293	1	12	324.056	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	1	5	2	5	34	24	34	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376482	5	124874613	GT	G	300	PASS	-	-	-	-	-	Del	-	D	124874613	124874623	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	2	13	9	13	9	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376545	5	125123666	CT	C	300	PASS	-	-	-	-	-	Del	-	D	125123666	125123675	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	3	15	20	15	20	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376625	5	125352011	A	AAG	300	PASS	-	-	-	-	-	Ins	-	I	125352011	125352024	2	6	264.026	-	-	6	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	0	5	0	5	12	24	12	24	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376725	5	125611006	CA	C	360	PASS	-	-	-	-	-	Del	-	D	125611006	125611016	1	12	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	1	5	3	9	10	27	10	27	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760376787	5	125796694	AT	A	300	PASS	GRAMD3	CCDS4136.1	r.?	-	-	Del	intronic	D	125796694	125796703	1	12	270.047	-	-	8	1	1	GRAMD3|CCDS4136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRAMD3|CCDS4136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	2	3	3	4	34	26	34	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377044	5	126463117	GA	G	360	PASS	-	-	-	-	-	Del	-	D	126463117	126463125	1	15	323.454	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	3	4	9	23	9	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377067	5	126609043	GA	G	300	PASS	-	-	-	-	-	Del	-	D	126609043	126609053	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	3	6	30	20	30	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377223	5	127270346	CA	C	420	PASS	-	-	-	-	-	Del	-	D	127270346	127270355	1	8	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	7	0	8	0	36	3	36	3	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377268	5	127538266	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	127538266	127538274	1	15	320.444	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	10	11	0	0	./.	4	2	5	5	30	38	30	38	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377272	5	127586053	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	127586053	127586061	1	10	265.833	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	12	11	0	0	./.	1	4	3	4	29	30	30	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377288	5	127668116	AT	A	360	PASS	FBN2	CCDS34222.1	r.?	-	-	Del	intronic	D	127668116	127668125	1	12	324.056	-	-	8	1	1	FBN2|CCDS34222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBN2|CCDS34222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	1	6	2	26	10	26	10	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377439	5	128323727	GA	G	420	PASS	SLC27A6	CCDS4145.1	r.?	-	-	Del	intronic	D	128323727	128323736	1	14	378.066	-	-	8	1	1	SLC27A6|CCDS4145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC27A6|CCDS4145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	1	6	1	9	15	27	15	27	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377447	5	128356804	GC	G	420	PASS	SLC27A6	CCDS4145.1	r.?	-	-	Del	intronic	D	128356804	128356810	1	14	377.464	-	-	5	1	1	SLC27A6|CCDS4145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC27A6|CCDS4145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	1	6	1	9	29	28	29	28	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377479	5	128535546	GA	G	420	PASS	-	-	-	-	-	Del	-	D	128535546	128535555	1	18	378.066	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	5	2	5	13	31	13	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377544	5	128782556	GA	G	420	PASS	-	-	-	-	-	Del	-	D	128782556	128782566	1	20	378.066	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	3	6	6	33	22	33	22	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377589	5	129004349	TG	T	540	PASS	ADAMTS19	CCDS4146.1	r.?	-	-	Del	intronic	D	129004349	129004358	1	30	483.676	-	-	8	1	1	ADAMTS19|CCDS4146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS19|CCDS4146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	4	5	5	6	15	22	15	22	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377623	5	129142070	GT	G	300	PASS	-	-	-	-	-	Del	-	D	129142070	129142076	1	12	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	3	4	4	33	21	33	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377697	5	129436658	TATA	T	329	PASS	CHSY3	CCDS34223.1	r.?	-	-	Del	intronic	D	129436658	129436666	3	7	324.056	-	-	2	1	1	CHSY3|CCDS34223.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHSY3|CCDS34223.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	0	6	2	6	13	30	13	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377814	5	130169717	TA	T	420	PASS	-	-	-	-	-	Del	-	D	130169717	130169725	1	20	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	4	5	4	31	28	31	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377831	5	130294780	CAA	C	360	PASS	-	-	-	-	-	Del	-	D	130294780	130294789	2	15	320.444	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	2	9	5	30	29	30	29	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760377911	5	130610905	A	AT	480	PASS	CDC42SE2	CCDS34224.1	r.?	-	-	Ins	intronic	I	130610905	130610915	1	25	423.646	-	-	9	1	1	CDC42SE2|CCDS34224.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDC42SE2|CCDS34224.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	4	4	4	5	32	33	32	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760378353	5	132035886	GT	G	300	PASS	KIF3A	CCDS34235.1	r.?	-	-	Del	intronic	D	132035886	132035896	1	12	270.047	-	-	9	1	1	KIF3A|CCDS34235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF3A|CCDS34235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	5	3	25	19	25	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760378703	5	133361895	CT	C	329	PASS	-	-	-	-	-	Del	-	D	133361895	133361903	1	16	323.454	-	-	7	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	3	3	3	3	23	27	23	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760378720	5	133383710	GA	G	540	PASS	-	-	-	-	-	Del	-	D	133383710	133383720	1	24	483.074	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	7	4	8	29	27	29	27	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760378737	5	133404787	AC	A	360	PASS	-	-	-	-	-	Del	-	D	133404787	133404794	1	16	324.056	-	-	6	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	3	3	5	3	35	15	35	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760378752	5	133448354	G	GA	420	PASS	TCF7	CCDS4170.1	r.?	-	-	Ins	upstream	I	133448354	133448363	1	18	373.851	-	-	8	1	1	TCF7|CCDS4170.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TCF7|CCDS4170.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	2	7	25	36	25	37	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379238	5	135154572	TA	T	420	PASS	-	-	-	-	-	Del	-	D	135154572	135154582	1	20	378.066	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	4	7	7	27	28	27	28	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379401	5	135900842	AT	A	300	PASS	-	-	-	-	-	Del	-	D	135900842	135900849	1	10	270.047	-	-	6	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	1	4	4	5	34	29	34	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379563	5	136583276	TA	T	420	PASS	SPOCK1	CCDS4191.1	r.?	-	-	Del	intronic	D	136583276	136583285	1	18	378.066	-	-	8	1	1	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	5	2	8	3	31	27	31	27	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379579	5	136650799	GA	G	600	PASS	SPOCK1	CCDS4191.1	r.?	-	-	Del	intronic	D	136650799	136650808	1	35	529.859	-	-	8	1	1	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	4	8	4	39	29	39	29	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379580	5	136651139	A	AC	480	PASS	SPOCK1	CCDS4191.1	r.?	-	-	Ins	intronic	I	136651139	136651147	1	24	427.259	-	-	7	1	1	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	5	3	6	34	38	34	38	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379588	5	136720646	TG	T	360	PASS	SPOCK1	CCDS4191.1	r.?	-	-	Del	intronic	D	136720646	136720655	1	12	324.056	-	-	8	1	1	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	1	5	1	29	10	29	10	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379850	5	137431937	CA	C	360	PASS	WNT8A	CCDS3945.1	r.?	-	-	Del	downstream	D	137431937	137431947	1	15	324.056	-	-	9	1	1	WNT8A|CCDS3945.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	WNT8A|CCDS3945.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	12	8	12	0	0	./.	2	4	2	6	34	22	34	22	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379903	5	137535616	CA	C	360	PASS	CDC23	CCDS4200.2	r.?	-	-	Del	intronic	D	137535616	137535624	1	16	324.056	-	-	7	1	1	CDC23|CCDS4200.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC23|CCDS4200.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	3	5	4	26	26	26	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760379921	5	137573526	AT	A	360	PASS	-	-	-	-	-	Del	-	D	137573526	137573536	1	15	319.24	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	9	2	30	21	30	21	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380016	5	137808932	C	CA	300	PASS	EGR1	CCDS4206.1	r.?	-	-	Ins	downstream	I	137808932	137808940	1	10	265.23	-	-	7	1	1	EGR1|CCDS4206.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	EGR1|CCDS4206.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	4	13	4	0	0	./.	1	4	2	5	21	26	21	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380032	5	137843678	A	AT	300	PASS	ETF1	CCDS4207.1	r.1851_1852insa	c.?	p.?	Ins	3'UTR variant	I	137843678	137843687	1	10	267.037	-	-	8	1	1	ETF1|CCDS4207.1|r.1851_1852insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ETF1|CCDS4207.1|r.1851_1852insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	10	13	11	13	0	0	./.	1	4	2	8	24	29	26	29	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380077	5	137926632	GT	G	300	PASS	-	-	-	-	-	Del	-	D	137926632	137926641	1	12	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	10	22	34	22	34	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380143	5	138094877	AT	A	300	PASS	CTNNA1	CCDS34243.1	r.?	-	-	Del	intronic	D	138094877	138094887	1	12	270.047	-	-	9	1	1	CTNNA1|CCDS34243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTNNA1|CCDS34243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	3	2	5	3	24	22	24	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380220	5	138259942	G	GT	300	PASS	CTNNA1	CCDS34243.1	r.?	-	-	Ins	intronic	I	138259942	138259951	1	12	267.037	-	-	8	1	-	CTNNA1|CCDS34243.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA1|CCDS34243.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	5	3	22	27	22	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380264	5	138532656	CA	C	269	PASS	SIL1	CCDS4209.1	r.?	-	-	Del	intronic	D	138532656	138532666	1	12	270.047	-	-	9	1	1	SIL1|CCDS4209.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SIL1|CCDS4209.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	2	3	3	4	15	28	15	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380392	5	138917607	TTTTG	T	389	PASS	-	-	-	-	-	Del	-	D	138917607	138917631	4	20	377.464	-	-	5	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	3	5	4	33	27	33	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380426	5	138961562	GT	G	540	PASS	UBE2D2	CCDS47275.1	r.?	-	-	Del	intronic	D	138961562	138961572	1	28	483.074	-	-	9	1	1	UBE2D2|CCDS47275.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	UBE2D2|CCDS47275.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	6	3	9	7	22	26	22	26	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380508	5	139291754	AG	A	360	PASS	NRG2	CCDS47277.1	r.?	-	-	Del	intronic	D	139291754	139291760	1	16	324.056	-	-	5	1	1	NRG2|CCDS47277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG2|CCDS47277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	3	4	4	18	24	18	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380586	5	139608788	CT	C	420	PASS	C5orf32	CCDS4221.1	r.?	-	-	Del	intronic	D	139608788	139608798	1	20	376.862	-	-	9	1	1	C5orf32|CCDS4221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf32|CCDS4221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	4	6	4	22	36	22	36	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380726	5	140018833	CT	C	360	PASS	TMCO6	CCDS4233.2	r.?	-	-	Del	upstream	D	140018833	140018841	1	15	324.056	-	-	7	1	1	TMCO6|CCDS4233.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TMCO6|CCDS4233.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	7	12	7	0	0	./.	2	4	4	5	24	32	24	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380739	5	140045981	CA	C	480	PASS	WDR55	CCDS4235.1	r.?	-	-	Del	intronic	D	140045981	140045991	1	25	432.075	-	-	9	1	1	WDR55|CCDS4235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR55|CCDS4235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	4	4	6	4	28	23	28	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380740	5	140053247	AG	A	540	PASS	WDR55	CCDS4235.1	r.?	-	-	Del	downstream	D	140053247	140053254	1	28	483.676	-	-	6	1	1	WDR55|CCDS4235.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HARS|ENST00000504156|r.2844delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	7	8	7	0	0	./.	6	3	6	3	30	29	30	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380754	5	140083648	CT	C	389	PASS	HARS2	CCDS4238.1	r.?	-	-	Del	downstream	D	140083648	140083658	1	20	377.464	-	-	9	1	1	HARS2|CCDS4238.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZMAT2|CCDS4239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	4	5	29	34	29	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760380907	5	140654900	GA	G	332	PASS	-	-	-	-	-	Del	-	D	140654900	140654910	1	21	432.075	-	-	9	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	6	2	7	3	23	19	23	19	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381022	5	141206960	CT	C	300	PASS	-	-	-	-	-	Del	-	D	141206960	141206969	1	10	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	1	5	2	19	21	19	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381094	5	141376496	CA	C	300	PASS	GNPDA1	CCDS4272.1	r.?	-	-	Del	downstream	D	141376496	141376505	1	12	266.435	-	-	8	1	1	GNPDA1|CCDS4272.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GNPDA1|ENST00000513454|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	3	2	4	10	14	10	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381245	5	141717757	TA	T	360	PASS	-	-	-	-	-	Del	-	D	141717757	141717767	1	15	321.046	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	5	4	20	18	20	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381341	5	141991160	C	CT	360	PASS	FGF1	CCDS4275.1	r.?	-	-	Ins	intronic	I	141991160	141991163	1	15	319.24	-	-	2	1	1	FGF1|CCDS4275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF1|CCDS4275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	8	0	0	./.	4	2	6	3	29	21	29	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381403	5	142223202	GT	G	360	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142223202	142223212	1	16	324.056	-	-	9	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	3	3	6	3	31	22	31	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381406	5	142225530	CT	C	540	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142225530	142225538	1	24	475.85	-	-	7	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	7	2	7	28	25	28	25	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381429	5	142351154	AT	A	360	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142351154	142351164	1	15	324.056	-	-	9	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	2	6	4	31	23	31	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381431	5	142356217	AT	A	300	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142356217	142356225	1	12	270.047	-	-	7	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	6	4	28	27	28	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381437	5	142383537	CAG	C	269	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142383537	142383545	2	12	270.047	-	-	3	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	9	9	0	0	./.	3	2	4	3	27	16	27	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381444	5	142417814	C	CT	480	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Ins	intronic	I	142417814	142417823	1	24	424.248	-	-	8	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	5	3	7	25	34	27	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381471	5	142562425	AT	A	420	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142562425	142562431	1	18	377.464	-	-	5	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	2	5	6	5	24	32	24	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381568	5	142910992	GA	G	294	PASS	-	-	-	-	-	Del	-	D	142910992	142911002	1	12	269.445	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	3	3	23	17	23	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381783	5	143863484	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	143863484	143863492	1	16	320.444	-	-	7	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	3	3	3	3	12	17	12	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760381942	5	144385941	AT	A	300	PASS	-	-	-	-	-	Del	-	D	144385941	144385950	1	10	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	1	4	1	4	6	12	6	12	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382015	5	144633401	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	144633401	144633410	1	12	265.833	-	-	8	1	-	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	3	6	22	36	22	37	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382074	5	144832019	AT	A	360	PASS	-	-	-	-	-	Del	-	D	144832019	144832026	1	16	322.25	-	-	6	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	3	3	4	6	22	34	22	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382076	5	144841410	AT	A	300	PASS	-	-	-	-	-	Del	-	D	144841410	144841416	1	12	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	2	3	5	28	15	28	15	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382133	5	145123794	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	145123794	145123797	2	10	267.037	-	-	2	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	1	7	15	36	15	36	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382194	5	145409269	G	GA	360	PASS	SH3RF2	CCDS4280.1	r.?	-	-	Ins	intronic	I	145409269	145409275	1	15	320.444	-	-	5	1	1	SH3RF2|CCDS4280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3RF2|CCDS4280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	11	10	0	0	./.	4	2	4	2	35	25	35	26	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382204	5	145435817	TG	T	540	PASS	SH3RF2	CCDS4280.1	r.?	-	-	Del	intronic	D	145435817	145435824	1	28	486.085	-	-	6	1	1	SH3RF2|CCDS4280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3RF2|CCDS4280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	14	2	14	0	0	./.	6	3	6	3	31	24	31	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382213	5	145453221	AT	A	300	PASS	SH3RF2	ENST00000511217	r.?	-	-	Del	intronic	D	145453221	145453231	1	12	270.047	-	-	9	1	1	SH3RF2|ENST00000511217|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	SH3RF2|ENST00000511217|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	5	4	21	25	21	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382315	5	145722633	CT	C	480	PASS	POU4F3	CCDS4281.1	r.?	-	-	Del	downstream	D	145722633	145722643	1	24	431.473	-	-	9	1	1	POU4F3|CCDS4281.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	POU4F3|CCDS4281.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	3	5	3	5	23	21	23	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382438	5	146111406	CT	C	360	PASS	PPP2R2B	CCDS4284.1	r.?	-	-	Del	intronic	D	146111406	146111416	1	15	324.056	-	-	9	1	1	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	4	2	5	26	23	26	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382511	5	146428939	CT	C	300	PASS	PPP2R2B	CCDS4284.1	r.?	-	-	Del	intronic	D	146428939	146428949	1	10	270.047	-	-	9	1	1	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	1	4	1	26	19	26	19	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382850	5	147544926	TA	T	480	PASS	SPINK5L2	CCDS4288.1	r.?	-	-	Del	upstream	D	147544926	147544935	1	21	431.473	-	-	8	1	1	SPINK5L2|CCDS4288.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SPINK5L2|CCDS4288.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	9	7	9	0	0	./.	6	2	9	3	24	29	24	29	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760382934	5	147851699	C	CA	540	PASS	HTR4	CCDS34271.1	r.?	-	-	Ins	intronic	I	147851699	147851702	1	30	480.064	-	-	2	1	1	HTR4|CCDS34271.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HTR4|CCDS34271.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	4	5	4	5	23	27	24	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383105	5	148607973	G	GA	360	PASS	ABLIM3	CCDS4294.1	r.?	-	-	Ins	intronic	I	148607973	148607982	1	15	320.444	-	-	8	1	1	ABLIM3|CCDS4294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABLIM3|CCDS4294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	2	6	11	23	11	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383110	5	148629460	CTG	C	600	PASS	ABLIM3	CCDS4294.1	r.?	-	-	Del	intronic	D	148629460	148629466	2	36	540.094	-	-	2	1	1	ABLIM3|CCDS4294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABLIM3|CCDS4294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	5	5	5	34	22	34	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383139	5	148731796	AT	A	480	PASS	GRPEL2	CCDS4295.1	r.1740delU	c.?	p.?	Del	3'UTR variant	D	148731796	148731806	1	24	432.075	-	-	9	1	1	GRPEL2|CCDS4295.1|r.1740delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GRPEL2|CCDS4295.1|r.1740delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	12	12	12	0	0	./.	5	3	8	4	28	17	28	17	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383221	5	148944385	C	CA	480	PASS	ENSG00000183111	ENST00000505810	r.?	-	-	Ins	intronic	I	148944385	148944393	1	24	427.259	-	-	7	1	1	ENSG00000183111|ENST00000505810|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000183111|ENST00000505810|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	3	5	4	6	24	30	24	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383334	5	149241349	GA	G	420	PASS	PDE6A	CCDS4299.1	r.?	-	-	Del	intronic	D	149241349	149241357	1	14	376.862	-	-	7	1	1	PDE6A|CCDS4299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE6A|CCDS4299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	1	8	1	27	31	27	31	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383369	5	149357015	CT	C	360	PASS	SLC26A2	CCDS4300.1	r.?	-	-	Del	intronic	D	149357015	149357025	1	15	322.852	-	-	9	1	1	SLC26A2|CCDS4300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC26A2|CCDS4300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	4	2	5	26	31	26	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383382	5	149427558	TCTC	T	360	PASS	HMGXB3	ENST00000421549	r.?	-	-	Del	intronic	D	149427558	149427567	3	15	321.046	-	-	2	1	1	HMGXB3|ENST00000421549|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGXB3|ENST00000421549|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	4	2	5	3	26	26	26	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383414	5	149550422	CT	C	480	PASS	CDX1	CCDS4304.1	r.?	-	-	Del	intronic	D	149550422	149550432	1	24	430.871	-	-	9	1	1	CDX1|CCDS4304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDX1|CCDS4304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	5	3	6	6	37	40	37	40	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383497	5	149820828	GGGAA	G	300	PASS	RPS14	CCDS4307.1	r.?	-	-	Del	downstream	D	149820828	149820838	4	10	270.047	-	-	2	1	1	RPS14|CCDS4307.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RPS14|CCDS4307.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	6	12	6	0	0	./.	1	4	1	8	26	28	26	28	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383505	5	149857356	CAAG	C	269	PASS	-	-	-	-	-	Del	-	D	149857356	149857363	3	10	270.047	-	-	2	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	4	1	25	24	25	24	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383611	5	150357980	CA	C	300	PASS	-	-	-	-	-	Del	-	D	150357980	150357990	1	12	267.639	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	3	3	21	27	21	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760383710	5	150650540	TA	T	780	PASS	GM2A	CCDS4313.1	r.?	-	-	Del	downstream	D	150650540	150650549	1	54	700.918	-	-	8	1	1	GM2A|CCDS4313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GM2A|CCDS4313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	16	14	16	0	0	./.	5	8	7	8	25	39	25	39	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760384008	5	151405168	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	151405168	151405171	2	15	324.056	-	-	1	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	4	2	5	4	22	18	22	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760384772	5	153967362	ACT	A	269	PASS	-	-	-	-	-	Del	-	D	153967362	153967372	2	12	270.047	-	-	4	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	2	3	26	29	26	29	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760384875	5	154196090	CT	C	300	PASS	LARP1	CCDS34281.1	r.6155delU	c.?	p.?	Del	3'UTR variant	D	154196090	154196100	1	10	261.016	-	-	9	1	-	LARP1|CCDS34281.1|r.6155delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	LARP1|CCDS34281.1|r.6155delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	14	13	14	0	0	./.	4	1	7	2	27	18	27	18	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760384972	5	154523535	TTC	T	420	PASS	-	-	-	-	-	Del	-	D	154523535	154523550	2	20	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	3	4	5	24	22	24	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760384987	5	154597935	AT	A	360	PASS	-	-	-	-	-	Del	-	D	154597935	154597945	1	15	324.056	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	5	3	33	22	33	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385109	5	155006718	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	155006718	155006725	1	10	267.037	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	4	1	38	26	39	26	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385150	5	155196999	AT	A	600	PASS	-	-	-	-	-	Del	-	D	155196999	155197009	1	32	539.492	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	7	3	7	31	31	31	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385234	5	155679073	AT	A	300	PASS	-	-	-	-	-	Del	-	D	155679073	155679083	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	2	5	3	22	31	22	31	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385238	5	155698002	CA	C	600	PASS	-	-	-	-	-	Del	-	D	155698002	155698010	1	36	536.482	-	-	7	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	5	6	6	27	29	27	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385334	5	156052225	CT	C	300	PASS	SGCD	CCDS47325.1	r.?	-	-	Del	intronic	D	156052225	156052235	1	12	270.047	-	-	9	1	1	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	3	2	18	25	18	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385374	5	156227926	GA	G	300	PASS	-	-	-	-	-	Del	-	D	156227926	156227934	1	12	270.047	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	4	3	25	26	25	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385516	5	156549946	CT	C	300	PASS	-	-	-	-	-	Del	-	D	156549946	156549953	1	12	270.047	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	2	3	8	10	8	10	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385698	5	157138864	CT	C	420	PASS	-	-	-	-	-	Del	-	D	157138864	157138873	1	14	377.464	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	1	7	3	26	8	26	8	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385768	5	157275121	AT	A	300	PASS	CLINT1	CCDS47330.1	r.?	-	-	Del	intronic	D	157275121	157275131	1	10	270.047	-	-	9	1	1	CLINT1|CCDS47330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLINT1|CCDS47330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	1	4	13	28	13	28	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385827	5	157397053	GT	G	420	PASS	-	-	-	-	-	Del	-	D	157397053	157397063	1	18	378.066	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	5	2	7	2	32	23	32	23	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385873	5	157554555	GA	G	300	PASS	-	-	-	-	-	Del	-	D	157554555	157554564	1	12	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	3	14	3	14	0	0	./.	3	2	3	6	23	26	23	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385945	5	157836076	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	157836076	157836084	1	12	267.037	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	5	2	21	17	21	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760385972	5	157916832	GA	G	360	PASS	-	-	-	-	-	Del	-	D	157916832	157916840	1	15	324.056	-	-	7	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	2	4	3	4	28	26	28	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386025	5	158079093	GTACTC	G	420	PASS	-	-	-	-	-	Del	-	D	158079093	158079100	5	20	377.464	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	4	3	4	14	18	14	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386102	5	158381999	AT	A	420	PASS	EBF1	CCDS4343.1	r.?	-	-	Del	intronic	D	158381999	158382008	1	20	378.066	-	-	8	1	1	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	4	3	4	3	18	35	18	35	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386221	5	158889682	AT	A	300	PASS	-	-	-	-	-	Del	-	D	158889682	158889692	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	3	2	4	3	28	26	28	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386267	5	159032553	GA	G	540	PASS	-	-	-	-	-	Del	-	D	159032553	159032563	1	24	486.085	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	7	3	7	35	37	35	37	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386273	5	159045040	GA	G	300	PASS	-	-	-	-	-	Del	-	D	159045040	159045048	1	12	270.047	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	3	5	20	21	20	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386617	5	159997027	G	GT	300	PASS	ATP10B	CCDS43394.1	r.?	-	-	Ins	intronic	I	159997027	159997036	1	6	266.435	-	-	8	1	1	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	0	5	0	5	1	29	1	29	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386670	5	160194126	TA	T	360	PASS	ATP10B	CCDS43394.1	r.?	-	-	Del	intronic	D	160194126	160194135	1	16	324.056	-	-	8	1	1	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	3	3	4	27	17	27	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386848	5	160799777	CT	C	540	PASS	GABRB2	CCDS4355.1	r.?	-	-	Del	intronic	D	160799777	160799784	1	24	486.085	-	-	6	1	1	GABRB2|CCDS4355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABRB2|CCDS4355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	7	2	8	3	31	10	31	10	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760386864	5	160892260	GA	G	480	PASS	GABRB2	CCDS4355.1	r.?	-	-	Del	intronic	D	160892260	160892270	1	16	432.075	-	-	9	1	1	GABRB2|CCDS4355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABRB2|CCDS4355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	7	1	7	2	30	21	30	21	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387168	5	161969066	TA	T	360	PASS	-	-	-	-	-	Del	-	D	161969066	161969075	1	15	324.056	-	-	8	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	2	3	2	27	30	27	30	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387221	5	162144797	GT	G	300	PASS	-	-	-	-	-	Del	-	D	162144797	162144806	1	12	268.843	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	3	2	28	24	28	24	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387283	5	162347367	CT	C	300	PASS	-	-	-	-	-	Del	-	D	162347367	162347377	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	4	2	4	9	24	9	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387304	5	162427836	CA	C	300	PASS	-	-	-	-	-	Del	-	D	162427836	162427845	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	4	2	30	12	30	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387557	5	163096943	ATAAT	A	300	PASS	-	-	-	-	-	Del	-	D	163096943	163096950	4	10	270.047	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	3	4	24	30	24	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387709	5	163753747	CA	C	420	PASS	-	-	-	-	-	Del	-	D	163753747	163753755	1	18	378.066	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	5	9	23	31	23	31	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387729	5	163830153	G	GA	300	PASS	AC008446.1	ENST00000486913	r.?	-	-	Ins	intronic	I	163830153	163830162	1	6	266.435	-	-	8	1	1	AC008446.1|ENST00000486913|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC008446.1|ENST00000486913|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	0	5	0	6	13	26	13	26	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387733	5	163855446	T	TA	300	PASS	AC008446.1	ENST00000486913	r.?	-	-	Ins	intronic	I	163855446	163855450	1	6	267.037	-	-	3	1	1	AC008446.1|ENST00000486913|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC008446.1|ENST00000486913|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	0	6	2	28	25	28	26	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760387991	5	164709950	CA	C	420	PASS	-	-	-	-	-	Del	-	D	164709950	164709956	1	20	378.066	-	-	5	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	3	4	3	21	24	21	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388130	5	165320598	AT	A	360	PASS	-	-	-	-	-	Del	-	D	165320598	165320605	1	12	324.056	-	-	6	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	5	1	6	1	32	21	32	21	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388147	5	165479865	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	165479865	165479874	1	12	267.037	-	-	8	1	1	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	3	2	3	4	22	19	22	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388269	5	165903246	AC	A	420	PASS	-	-	-	-	-	Del	-	D	165903246	165903252	1	18	378.066	-	-	5	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	2	5	3	11	26	11	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388333	5	166109474	GT	G	300	PASS	-	-	-	-	-	Del	-	D	166109474	166109484	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	3	2	4	4	25	26	25	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388353	5	166189011	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	166189011	166189018	1	12	267.037	-	-	6	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	2	3	5	25	27	26	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388392	5	166322634	GA	G	300	PASS	-	-	-	-	-	Del	-	D	166322634	166322643	1	12	270.047	-	-	8	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	2	3	3	4	21	17	21	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388482	5	166626807	AT	A	300	PASS	-	-	-	-	-	Del	-	D	166626807	166626815	1	12	270.047	-	-	7	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	2	3	4	5	21	26	21	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388593	5	166892678	CA	C	306	PASS	-	-	-	-	-	Del	-	D	166892678	166892687	1	15	322.852	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	5	6	29	20	29	20	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388715	5	167276336	GA	G	540	PASS	-	-	-	-	-	Del	-	D	167276336	167276345	1	30	486.085	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	4	7	4	35	23	35	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388727	5	167315482	CA	C	600	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167315482	167315492	1	36	540.094	-	-	9	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	5	6	6	28	19	28	19	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388753	5	167418007	AT	A	360	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167418007	167418014	1	15	324.056	-	-	6	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	2	6	17	27	17	27	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760388771	5	167475178	GA	G	269	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167475178	167475188	1	12	270.047	-	-	9	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	5	4	31	27	31	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389013	5	168089463	CT	C	480	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	downstream	D	168089463	168089472	1	24	430.269	-	-	8	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	7	6	39	34	39	34	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389041	5	168215601	AT	A	269	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168215601	168215611	1	12	270.047	-	-	9	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	3	2	7	2	27	24	27	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389080	5	168348238	TA	T	480	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168348238	168348246	1	24	425.453	-	-	7	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	3	5	5	6	33	28	33	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389108	5	168407109	CAA	C	360	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168407109	168407114	2	15	324.056	-	-	4	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	4	2	4	25	25	25	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389109	5	168420267	AG	A	480	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168420267	168420270	1	24	430.269	-	-	2	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	3	7	3	31	24	31	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389138	5	168556559	CA	C	449	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168556559	168556568	1	21	432.075	-	-	8	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	6	2	6	3	25	28	25	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389210	5	168789954	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	168789954	168789963	1	20	373.851	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	15	0	0	./.	4	3	4	3	22	24	23	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389254	5	168960943	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	168960943	168960960	2	10	269.445	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	4	6	27	21	27	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389361	5	169324198	CT	C	300	PASS	DOCK2	CCDS4371.1	r.?	-	-	Del	intronic	D	169324198	169324208	1	12	270.047	-	-	9	1	1	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	3	2	28	10	28	10	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389481	5	169748557	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	169748557	169748567	1	25	427.259	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	4	5	6	27	21	27	21	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389486	5	169763680	TA	T	480	PASS	AC034199.1	ENST00000436248	r.?	-	-	Del	downstream	D	169763680	169763685	1	24	432.075	-	-	4	1	1	AC034199.1|ENST00000436248|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC034199.1|ENST00000436248|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	5	3	8	4	30	23	30	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389823	5	170781036	CT	C	480	PASS	-	-	-	-	-	Del	-	D	170781036	170781046	1	21	432.075	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	2	10	4	32	24	32	24	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389886	5	170899478	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	170899478	170899482	1	10	260.414	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	2	26	12	26	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389922	5	171000899	GC	G	420	PASS	-	-	-	-	-	Del	-	D	171000899	171000906	1	20	378.066	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	4	3	7	25	38	25	38	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760389942	5	171053237	CT	C	300	PASS	-	-	-	-	-	Del	-	D	171053237	171053247	1	6	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	0	6	2	32	12	32	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390106	5	171546420	TA	T	296	PASS	STK10	CCDS34290.1	r.?	-	-	Del	intronic	D	171546420	171546430	1	20	378.066	-	-	9	1	1	STK10|CCDS34290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK10|CCDS34290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	4	5	15	27	15	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390203	5	171807359	GT	G	360	PASS	SH3PXD2B	CCDS34291.1	r.?	-	-	Del	intronic	D	171807359	171807365	1	16	324.056	-	-	5	1	1	SH3PXD2B|CCDS34291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3PXD2B|CCDS34291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	3	5	3	14	25	14	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390302	5	172133579	AC	A	300	PASS	-	-	-	-	-	Del	-	D	172133579	172133586	1	12	270.047	-	-	6	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	3	3	19	25	19	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390330	5	172204834	AAGG	A	360	PASS	-	-	-	-	-	Del	-	D	172204834	172204845	3	15	324.056	-	-	3	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	3	5	28	27	28	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390558	5	172696631	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	172696631	172696641	1	12	267.037	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	4	3	22	24	22	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390589	5	172791953	AT	A	300	PASS	-	-	-	-	-	Del	-	D	172791953	172791959	1	12	270.047	-	-	5	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	2	3	4	26	23	26	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390799	5	173503461	GA	G	300	PASS	ENSG00000170091	CCDS4391.1	r.?	-	-	Del	intronic	D	173503461	173503469	1	12	270.047	-	-	7	1	1	ENSG00000170091|CCDS4391.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000170091|CCDS4391.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	3	3	17	21	17	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390828	5	173615289	CA	C	420	PASS	-	-	-	-	-	Del	-	D	173615289	173615295	1	20	378.066	-	-	5	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	3	5	4	37	36	37	36	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760390911	5	173808866	CT	C	300	PASS	-	-	-	-	-	Del	-	D	173808866	173808876	1	10	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	1	4	2	7	33	31	33	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391281	5	174650039	GA	G	600	PASS	-	-	-	-	-	Del	-	D	174650039	174650049	1	35	540.094	-	-	9	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	6	4	8	5	35	34	35	34	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391289	5	174683534	AT	A	660	PASS	-	-	-	-	-	Del	-	D	174683534	174683542	1	42	594.103	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	6	5	7	34	26	34	26	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391303	5	174747439	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	174747439	174747447	1	20	367.831	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	6	4	26	23	26	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391313	5	174777694	GT	G	360	PASS	-	-	-	-	-	Del	-	D	174777694	174777700	1	16	321.046	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	4	4	24	25	24	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391611	5	175711975	CA	C	300	PASS	C5orf25	CCDS4398.2	r.?	-	-	Del	intronic	D	175711975	175711983	1	18	378.066	-	-	7	1	1	C5orf25|CCDS4398.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf25|CCDS4398.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	5	3	5	22	28	22	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391806	5	176094212	TA	T	300	PASS	-	-	-	-	-	Del	-	D	176094212	176094222	1	12	270.047	-	-	9	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	2	3	5	5	27	21	27	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760391872	5	176293087	T	TCA	389	PASS	UNC5A	CCDS34299.1	r.?	-	-	Ins	intronic	I	176293087	176293099	2	18	361.81	-	-	5	1	1	UNC5A|CCDS34299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNC5A|CCDS34299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	10	17	0	0	./.	2	5	5	8	31	36	31	36	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392101	5	176990990	A	AG	540	PASS	-	-	-	-	-	Ins	-	I	176990990	176990995	1	28	480.064	-	-	4	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	3	6	4	22	25	22	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392104	5	176996066	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	176996066	176996076	1	6	266.435	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	0	6	0	31	24	31	24	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392364	5	177657532	GT	G	360	PASS	AGXT2L2	CCDS4434.1	r.?	-	-	Del	intronic	D	177657532	177657542	1	15	321.648	-	-	9	1	1	AGXT2L2|CCDS4434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGXT2L2|CCDS4434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	3	5	25	24	25	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392468	5	177957461	CA	C	300	PASS	COL23A1	CCDS4436.1	r.?	-	-	Del	intronic	D	177957461	177957471	1	12	270.047	-	-	9	1	1	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	5	2	29	23	29	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392538	5	178120157	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	178120157	178120165	1	20	370.239	-	-	7	1	1	-	-	./.	0	0	0	0	5	8	6	8	0	0	./.	3	4	5	4	29	39	29	39	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392915	5	179018188	GT	G	480	PASS	RUFY1	CCDS4445.2	r.?	-	-	Del	intronic	D	179018188	179018198	1	25	432.075	-	-	9	1	1	RUFY1|CCDS4445.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUFY1|CCDS4445.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	4	6	21	30	21	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760392997	5	179151044	TA	T	480	PASS	CANX	CCDS4447.1	r.?	-	-	Del	intronic	D	179151044	179151054	1	16	429.065	-	-	9	1	1	CANX|CCDS4447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CANX|CCDS4447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	1	7	1	7	30	27	30	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393013	5	179173345	CA	C	660	PASS	MAML1	CCDS34315.1	r.?	-	-	Del	intronic	D	179173345	179173355	1	42	594.103	-	-	9	1	1	MAML1|CCDS34315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAML1|CCDS34315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	6	5	9	8	28	22	28	22	9	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393093	5	179354086	CT	C	269	PASS	-	-	-	-	-	Del	-	D	179354086	179354093	1	12	269.445	-	-	6	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	3	2	4	19	26	19	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393209	5	179605834	AC	A	360	PASS	RASGEF1C	CCDS4452.1	r.?	-	-	Del	intronic	D	179605834	179605840	1	12	324.056	-	-	5	1	1	RASGEF1C|CCDS4452.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RASGEF1C|CCDS4452.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	1	5	1	17	15	17	15	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393459	5	180072133	T	TG	480	PASS	FLT4	CCDS4457.1	r.?	-	-	Ins	intronic	I	180072133	180072142	1	24	427.259	-	-	8	1	1	FLT4|CCDS4457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FLT4|CCDS4457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	5	13	5	0	0	./.	3	5	4	7	35	25	36	25	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393492	5	180179967	CA	C	480	PASS	-	-	-	-	-	Del	-	D	180179967	180179975	1	25	430.871	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	4	6	5	30	24	30	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393691	6	152044	GA	G	389	PASS	-	-	-	-	-	Del	-	D	152044	152053	1	20	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	3	5	3	26	23	26	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393863	6	589595	AT	A	420	PASS	EXOC2	CCDS34327.1	r.?	-	-	Del	intronic	D	589595	589602	1	20	378.063	-	-	6	1	1	EXOC2|CCDS34327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC2|CCDS34327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	3	6	4	33	17	33	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760393866	6	597493	AT	A	480	PASS	EXOC2	CCDS34327.1	r.?	-	-	Del	intronic	D	597493	597500	1	16	432.072	-	-	6	1	1	EXOC2|CCDS34327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC2|CCDS34327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	1	7	1	7	14	27	14	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394005	6	918682	TA	T	360	PASS	-	-	-	-	-	Del	-	D	918682	918691	1	16	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	6	3	37	22	37	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394191	6	1468128	TG	T	300	PASS	-	-	-	-	-	Del	-	D	1468128	1468138	1	10	268.841	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	1	8	1	23	16	23	16	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394393	6	2081818	GA	G	300	PASS	GMDS	CCDS4474.1	r.?	-	-	Del	intronic	D	2081818	2081828	1	12	270.045	-	-	9	1	1	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	2	3	2	21	27	21	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394429	6	2219803	TA	T	360	PASS	GMDS	CCDS4474.1	r.?	-	-	Del	intronic	D	2219803	2219813	1	16	324.054	-	-	9	1	1	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	4	4	24	20	24	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394452	6	2295352	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	2295352	2295359	1	12	267.035	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	13	10	0	0	./.	2	3	3	4	14	22	14	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394456	6	2300300	GT	G	360	PASS	-	-	-	-	-	Del	-	D	2300300	2300308	1	15	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	4	2	5	2	35	21	35	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394529	6	2525456	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	2525456	2525462	1	15	317.431	-	-	5	1	1	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	2	4	2	7	23	29	24	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394724	6	2963498	GA	G	300	PASS	SERPINB6	CCDS4479.1	r.?	-	-	Del	upstream	D	2963498	2963506	1	10	270.045	-	-	7	1	1	SERPINB6|CCDS4479.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SERPINB6|CCDS4479.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	1	4	1	5	20	14	20	14	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394767	6	3046293	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	3046293	3046296	1	15	319.839	-	-	2	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	4	2	5	27	30	27	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394892	6	3370166	GA	G	300	PASS	SLC22A23	CCDS47363.1	r.?	-	-	Del	intronic	D	3370166	3370173	1	6	270.045	-	-	6	1	1	SLC22A23|CCDS47363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC22A23|CCDS47363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	0	5	1	5	25	29	25	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760394940	6	3609481	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	3609481	3609491	1	12	267.035	-	-	9	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	2	3	2	4	35	27	35	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760395081	6	3984472	CA	C	300	PASS	ENSG00000145965	ENST00000356722	r.?	-	-	Del	downstream	D	3984472	3984480	1	12	270.045	-	-	7	1	1	ENSG00000145965|ENST00000356722|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ENSG00000145965|ENST00000356722|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	19	10	19	10	0	0	./.	3	2	5	5	33	25	33	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760395156	6	4259284	CT	C	389	PASS	-	-	-	-	-	Del	-	D	4259284	4259293	1	20	377.461	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	3	6	4	27	26	27	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760395551	6	5260059	TA	T	480	PASS	FARS2	CCDS4494.1	r.?	-	-	Del	upstream	D	5260059	5260069	1	24	432.072	-	-	9	1	1	FARS2|CCDS4494.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	LYRM4|ENST00000330636|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	5	5	5	42	22	42	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760395657	6	5625738	C	CG	300	PASS	FARS2	CCDS4494.1	r.?	-	-	Ins	intronic	I	5625738	5625742	1	10	267.035	-	-	3	1	1	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	1	4	1	33	29	33	29	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760396180	6	7060273	GA	G	360	PASS	-	-	-	-	-	Del	-	D	7060273	7060283	1	16	322.85	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	3	4	14	24	14	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760396402	6	7547020	GA	G	360	PASS	DSP	CCDS4501.1	r.?	-	-	Del	intronic	D	7547020	7547027	1	12	324.054	-	-	6	1	1	DSP|CCDS4501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSP|CCDS4501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	1	6	1	31	17	31	17	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760396494	6	7899668	CA	C	418	PASS	TXNDC5	CCDS4505.1	r.?	-	-	Del	intronic	D	7899668	7899676	1	25	432.072	-	-	7	1	1	TXNDC5|CCDS4505.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNDC5|CCDS4505.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	4	5	9	15	29	15	29	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760396632	6	8221964	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	8221964	8221968	1	18	373.848	-	-	3	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	2	6	3	23	26	23	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760396889	6	8834449	AT	A	360	PASS	-	-	-	-	-	Del	-	D	8834449	8834458	1	12	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	1	5	1	27	15	27	15	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760396896	6	8854756	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	8854756	8854765	1	25	423.643	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	12	8	0	0	./.	4	4	5	4	27	22	28	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397015	6	9160958	T	TA	343	PASS	-	-	-	-	-	Ins	-	I	9160958	9160965	1	28	480.662	-	-	6	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	6	4	6	32	25	32	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397078	6	9397745	CT	C	360	PASS	-	-	-	-	-	Del	-	D	9397745	9397755	1	12	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	1	9	1	29	7	29	7	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397085	6	9422708	AT	A	300	PASS	-	-	-	-	-	Del	-	D	9422708	9422716	1	6	268.239	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	0	5	0	6	1	27	1	27	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397144	6	9724220	AG	A	300	PASS	OFCC1	ENST00000460363	r.?	-	-	Del	intronic	D	9724220	9724226	1	12	270.045	-	-	5	1	1	OFCC1|ENST00000460363|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OFCC1|ENST00000460363|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	3	7	28	32	28	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397430	6	10453368	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	10453368	10453375	1	20	373.246	-	-	6	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	4	5	5	27	27	27	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397784	6	11363557	AT	A	300	PASS	NEDD9	ENST00000504387	r.?	-	-	Del	intronic	D	11363557	11363566	1	12	270.045	-	-	8	1	1	NEDD9|ENST00000504387|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NEDD9|ENST00000504387|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	3	3	31	23	31	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397807	6	11417323	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	11417323	11417332	1	25	418.224	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	4	7	6	31	27	31	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760397923	6	11736184	C	CT	269	PASS	C6orf105	CCDS4521.1	r.?	-	-	Ins	intronic	I	11736184	11736193	1	12	248.973	-	-	8	1	1	C6orf105|CCDS4521.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf105|CCDS4521.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	5	4	24	24	24	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398101	6	12314188	CT	C	277	PASS	-	-	-	-	-	Del	-	D	12314188	12314198	1	10	268.841	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	2	3	22	19	22	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398121	6	12384398	CA	C	360	PASS	-	-	-	-	-	Del	-	D	12384398	12384406	1	15	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	2	5	2	29	24	29	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398303	6	13071071	CA	C	300	PASS	PHACTR1	ENST00000379350	r.?	-	-	Del	intronic	D	13071071	13071081	1	12	265.83	-	-	9	1	1	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	2	34	24	34	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398334	6	13172173	AT	A	277	PASS	PHACTR1	ENST00000379350	r.?	-	-	Del	intronic	D	13172173	13172180	1	12	270.045	-	-	6	1	1	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	4	4	31	37	31	40	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398625	6	13906936	GT	G	360	PASS	-	-	-	-	-	Del	-	D	13906936	13906946	1	15	315.023	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	4	2	4	25	28	25	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398705	6	14098533	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	14098533	14098542	1	16	320.441	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	3	3	3	4	24	17	24	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398839	6	14557886	TC	T	480	PASS	-	-	-	-	-	Del	-	D	14557886	14557892	1	24	432.072	-	-	5	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	3	6	3	29	21	29	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760398910	6	14746685	CA	C	540	PASS	-	-	-	-	-	Del	-	D	14746685	14746692	1	28	484.877	-	-	6	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	6	6	7	34	34	34	34	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399067	6	15134293	CT	C	300	PASS	-	-	-	-	-	Del	-	D	15134293	15134303	1	10	267.637	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	6	2	24	22	24	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399163	6	15342865	AT	A	420	PASS	JARID2	CCDS4533.1	r.?	-	-	Del	intronic	D	15342865	15342871	1	18	378.063	-	-	5	1	1	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	5	3	5	19	22	19	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399250	6	15500313	AC	A	540	PASS	JARID2	CCDS4533.1	r.?	-	-	Del	intronic	D	15500313	15500320	1	24	486.081	-	-	6	1	1	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	7	4	12	30	32	30	32	4	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399509	6	16317722	A	AT	420	PASS	ATXN1	CCDS34342.1	r.?	-	-	Ins	intronic	I	16317722	16317730	1	18	373.246	-	-	7	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	5	2	6	2	27	20	27	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399582	6	16532935	CA	C	300	PASS	ATXN1	CCDS34342.1	r.?	-	-	Del	intronic	D	16532935	16532944	1	6	270.045	-	-	8	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	0	5	0	6	21	31	21	31	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399636	6	16664519	G	GT	360	PASS	ATXN1	CCDS34342.1	r.?	-	-	Ins	intronic	I	16664519	16664527	1	15	319.237	-	-	7	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	13	11	0	0	./.	2	4	4	5	22	27	22	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399637	6	16668404	GT	G	537	PASS	ATXN1	CCDS34342.1	r.?	-	-	Del	intronic	D	16668404	16668413	1	28	484.275	-	-	8	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	6	3	8	25	29	25	29	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399692	6	16881726	AT	A	300	PASS	-	-	-	-	-	Del	-	D	16881726	16881736	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	2	3	3	3	25	27	25	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399852	6	17265068	CT	C	300	PASS	-	-	-	-	-	Del	-	D	17265068	17265078	1	6	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	0	5	1	6	6	22	6	22	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399855	6	17271429	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	17271429	17271438	1	6	267.035	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	0	5	0	5	0	27	0	27	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399861	6	17281564	A	AG	300	PASS	RBM24	CCDS47378.1	r.?	-	-	Ins	upstream	I	17281564	17281572	1	10	266.432	-	-	7	1	1	RBM24|CCDS47378.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	RBM24|CCDS47378.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	8	2	29	23	29	23	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760399882	6	17343312	CA	C	298	PASS	-	-	-	-	-	Del	-	D	17343312	17343322	1	16	323.452	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	4	5	30	22	30	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760400444	6	18792732	AT	A	300	PASS	-	-	-	-	-	Del	-	D	18792732	18792742	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	7	2	21	10	21	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760400722	6	19757281	CA	C	360	PASS	-	-	-	-	-	Del	-	D	19757281	19757290	1	12	321.646	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	1	6	5	31	23	31	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760400842	6	20124287	CA	C	629	PASS	LPCAT3	CCDS34346.1	r.?	-	-	Del	intronic	D	20124287	20124297	1	42	594.099	-	-	9	1	1	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	5	7	6	29	28	29	28	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760400844	6	20132134	AT	A	480	PASS	LPCAT3	CCDS34346.1	r.?	-	-	Del	intronic	D	20132134	20132144	1	21	431.47	-	-	9	1	1	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	6	2	7	3	27	13	27	13	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760400871	6	20189628	AT	A	420	PASS	LPCAT3	CCDS34346.1	r.?	-	-	Del	intronic	D	20189628	20189637	1	20	378.063	-	-	8	1	1	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	3	4	18	24	18	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401039	6	20633304	GATA	G	360	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Del	intronic	D	20633304	20633313	3	15	324.054	-	-	2	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	2	4	24	13	24	13	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401094	6	20735405	C	CT	329	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Ins	intronic	I	20735405	20735413	1	16	320.441	-	-	7	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	7	4	26	22	26	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401124	6	20815848	TA	T	300	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Del	intronic	D	20815848	20815858	1	6	270.045	-	-	9	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	0	6	0	33	5	33	5	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401131	6	20827838	TA	T	660	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Del	intronic	D	20827838	20827848	1	40	594.099	-	-	9	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	7	4	7	27	21	27	21	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401216	6	21019646	CT	C	480	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Del	intronic	D	21019646	21019655	1	21	431.47	-	-	8	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	6	3	7	8	26	8	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401373	6	21580429	CTT	C	329	PASS	-	-	-	-	-	Del	-	D	21580429	21580434	2	15	324.054	-	-	4	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	7	3	29	22	29	22	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401386	6	21619645	CA	C	540	PASS	-	-	-	-	-	Del	-	D	21619645	21619654	1	30	484.275	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	4	7	8	25	35	25	35	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401398	6	21646383	AT	A	420	PASS	-	-	-	-	-	Del	-	D	21646383	21646393	1	14	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	1	9	1	33	3	33	3	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401540	6	21998762	CA	C	480	PASS	-	-	-	-	-	Del	-	D	21998762	21998771	1	21	432.072	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	6	2	7	25	29	25	29	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401602	6	22149926	A	AC	360	PASS	AL008732.1	ENST00000511541	r.?	-	-	Ins	upstream	I	22149926	22149930	1	15	314.421	-	-	3	1	1	AL008732.1|ENST00000511541|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	AL008732.1|ENST00000511541|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	5	10	6	10	0	0	./.	4	2	4	2	22	16	23	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401640	6	22242185	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	22242185	22242194	1	15	320.441	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	2	4	4	6	27	20	27	20	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401783	6	22684771	CA	C	360	PASS	-	-	-	-	-	Del	-	D	22684771	22684781	1	12	321.646	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	1	5	3	8	15	30	15	30	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760401991	6	23382114	GT	G	300	PASS	-	-	-	-	-	Del	-	D	23382114	23382116	1	6	270.045	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	5	0	8	0	28	0	28	0	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402452	6	24702856	CT	C	300	PASS	C6orf62	CCDS4559.1	r.?	-	-	Del	downstream	D	24702856	24702864	1	12	270.045	-	-	7	1	1	C6orf62|CCDS4559.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C6orf62|CCDS4559.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	2	4	25	23	25	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402643	6	25206024	TA	T	300	PASS	CMAH	ENST00000377993	r.?	-	-	Del	intronic	D	25206024	25206033	1	12	270.045	-	-	8	1	1	CMAH|ENST00000377993|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CMAH|ENST00000377993|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	2	3	18	21	18	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402654	6	25256579	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	25256579	25256588	1	18	372.644	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	2	5	26	26	26	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402658	6	25262732	TA	T	300	PASS	-	-	-	-	-	Del	-	D	25262732	25262741	1	10	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	4	1	5	1	27	14	27	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402671	6	25278016	GA	G	300	PASS	LRRC16A	ENST00000329474	r.?	-	-	Del	upstream	D	25278016	25278023	1	12	265.83	-	-	6	1	1	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	2	18	31	18	31	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402768	6	25459171	CT	C	300	PASS	LRRC16A	ENST00000329474	r.?	-	-	Del	intronic	D	25459171	25459180	1	12	270.045	-	-	8	1	1	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	5	3	17	23	17	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402803	6	25626665	CT	C	420	PASS	-	-	-	-	-	Del	-	D	25626665	25626672	1	8	378.063	-	-	6	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	7	0	7	0	31	3	31	3	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760402895	6	25966440	CT	C	360	PASS	TRIM38	CCDS4568.1	r.?	-	-	Del	intronic	D	25966440	25966448	1	15	324.054	-	-	7	1	1	TRIM38|CCDS4568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRIM38|CCDS4568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	19	4	19	0	0	./.	4	2	5	2	30	18	30	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403029	6	26420915	AT	A	360	PASS	-	-	-	-	-	Del	-	D	26420915	26420925	1	12	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	10	2	28	24	28	24	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403267	6	27065901	TA	T	420	PASS	-	-	-	-	-	Del	-	D	27065901	27065908	1	20	373.246	-	-	6	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	4	3	4	9	25	28	25	28	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403392	6	27435374	CA	C	300	PASS	ZNF184	CCDS4624.1	r.?	-	-	Del	intronic	D	27435374	27435384	1	12	269.443	-	-	9	1	1	ZNF184|CCDS4624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF184|CCDS4624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	3	2	5	3	18	25	18	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403393	6	27436795	C	CA	269	PASS	ZNF184	CCDS4624.1	r.?	-	-	Ins	intronic	I	27436795	27436804	1	12	267.035	-	-	8	1	1	ZNF184|CCDS4624.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF184|CCDS4624.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	5	3	28	17	28	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403444	6	27572543	CA	C	480	PASS	-	-	-	-	-	Del	-	D	27572543	27572552	1	21	430.868	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	2	8	4	34	22	34	22	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403467	6	27618588	TA	T	360	PASS	-	-	-	-	-	Del	-	D	27618588	27618598	1	15	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	2	4	2	4	20	28	20	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403630	6	28096360	GA	G	360	PASS	AL358933.1	CCDS34140.1	r.?	-	-	Del	intronic	D	28096360	28096369	1	16	324.054	-	-	8	1	1	AL358933.1|CCDS34140.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL358933.1|CCDS34140.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	3	3	3	3	26	16	26	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403635	6	28107544	GAGA	G	480	PASS	ZNF192	CCDS4645.1	r.?	-	-	Del	upstream	D	28107544	28107551	3	25	432.072	-	-	2	1	1	ZNF192|CCDS4645.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF192|CCDS4645.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	9	8	9	0	0	./.	4	4	5	4	21	15	21	15	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403675	6	28223390	CT	C	420	PASS	ZKSCAN4	CCDS4647.1	r.?	-	-	Del	upstream	D	28223390	28223400	1	18	375.052	-	-	9	1	1	ZKSCAN4|CCDS4647.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZKSCAN4|CCDS4647.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	16	7	16	0	0	./.	2	5	3	5	18	30	18	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403770	6	28500911	CA	C	600	PASS	GPX5	CCDS4652.1	r.?	-	-	Del	intronic	D	28500911	28500919	1	35	539.488	-	-	7	1	1	GPX5|CCDS4652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPX5|CCDS4652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	6	6	9	27	29	27	29	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403813	6	28641153	TA	T	420	PASS	-	-	-	-	-	Del	-	D	28641153	28641161	1	20	378.063	-	-	7	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	4	4	6	27	24	27	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403818	6	28664210	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	28664210	28664215	1	20	373.848	-	-	4	1	1	-	-	./.	0	0	0	0	5	18	6	18	0	0	./.	3	4	4	6	24	29	24	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403853	6	28729859	GA	G	300	PASS	-	-	-	-	-	Del	-	D	28729859	28729868	1	10	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	1	4	8	25	8	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760403927	6	28884941	GA	G	300	PASS	TRIM27	CCDS4654.1	r.?	-	-	Del	intronic	D	28884941	28884951	1	10	268.239	-	-	9	1	1	TRIM27|CCDS4654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM27|CCDS4654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	1	4	2	5	20	23	20	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760404235	6	29790425	CA	C	300	PASS	HLA-G	CCDS4668.1	r.?	-	-	Del	upstream	D	29790425	29790435	1	12	270.045	-	-	9	1	1	HLA-G|CCDS4668.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HLA-G|CCDS4668.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	4	14	4	14	0	0	./.	3	2	4	5	22	21	22	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760404524	6	30182618	CT	C	480	PASS	TRIM26	CCDS4678.1	r.?	-	-	Del	upstream	D	30182618	30182625	1	9	430.266	-	-	6	1	1	TRIM26|CCDS4678.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TRIM26|CCDS4678.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	13	7	13	0	0	./.	0	8	0	9	16	28	16	28	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760404536	6	30197206	CT	C	360	PASS	-	-	-	-	-	Del	-	D	30197206	30197216	1	16	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	3	4	3	21	34	21	34	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760404617	6	30366171	GT	G	300	PASS	-	-	-	-	-	Del	-	D	30366171	30366181	1	12	269.443	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	3	5	20	33	20	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760404687	6	30450747	TG	T	288	PASS	-	-	-	-	-	Del	-	D	30450747	30450752	1	12	324.054	-	-	4	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	1	5	2	5	21	14	21	14	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760405337	6	31775623	C	CA	480	PASS	HSPA1L	CCDS34413.1	r.?	-	-	Ins	downstream	I	31775623	31775630	1	25	425.449	-	-	6	1	1	HSPA1L|CCDS34413.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	LSM2|CCDS4722.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	8	8	8	8	0	0	./.	4	4	4	6	22	18	22	18	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760405340	6	31780065	T	TC	420	PASS	HSPA1L	CCDS34413.1	r.?	-	-	Ins	intronic	I	31780065	31780069	1	14	372.644	-	-	3	1	1	HSPA1L|CCDS34413.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HSPA1L|CCDS34413.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	1	6	1	6	22	31	23	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760405426	6	32114930	CT	C	360	PASS	PRRT1	CCDS4739.1	r.?	-	-	Del	downstream	D	32114930	32114940	1	15	323.452	-	-	9	1	1	PRRT1|CCDS4739.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRRT1|CCDS4739.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	6	9	6	0	0	./.	2	4	2	4	26	21	26	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406107	6	32998084	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	32998084	32998098	2	16	322.248	-	-	6	1	-	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	4	3	30	25	30	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406365	6	33519206	AT	A	540	PASS	-	-	-	-	-	Del	-	D	33519206	33519216	1	30	486.081	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	4	5	6	34	30	34	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406575	6	34192049	AC	A	420	PASS	-	-	-	-	-	Del	-	D	34192049	34192058	1	20	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	4	3	6	30	23	30	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406705	6	34470418	A	AT	420	PASS	PACSIN1	CCDS4793.1	r.?	-	-	Ins	intronic	I	34470418	34470425	1	20	360.603	-	-	6	1	1	PACSIN1|CCDS4793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PACSIN1|CCDS4793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	3	4	6	7	28	29	28	30	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406729	6	34577553	TCTC	T	420	PASS	C6orf106	CCDS4796.1	r.?	-	-	Del	intronic	D	34577553	34577560	3	18	378.063	-	-	2	1	1	C6orf106|CCDS4796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf106|CCDS4796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	5	2	5	5	32	24	32	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406874	6	35009691	GA	G	300	PASS	ANKS1A	CCDS4798.1	r.?	-	-	Del	intronic	D	35009691	35009699	1	12	270.045	-	-	7	1	1	ANKS1A|CCDS4798.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1A|CCDS4798.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	2	26	25	26	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760406979	6	35393050	CA	C	540	PASS	PPARD	CCDS4804.1	r.1922delA	c.?	p.?	Del	3'UTR variant	D	35393050	35393059	1	30	486.081	-	-	8	1	1	PPARD|CCDS4804.1|r.1922delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PPARD|CCDS4804.1|r.1922delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	12	14	12	0	0	./.	4	5	5	6	34	32	34	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407051	6	35548482	AT	A	360	PASS	FKBP5	CCDS4808.1	r.?	-	-	Del	intronic	D	35548482	35548492	1	7	324.054	-	-	9	1	1	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FKBP5|ENST00000373875|r.7071delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	11	7	11	0	0	./.	6	0	6	1	31	10	33	10	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407064	6	35562379	TAC	T	300	PASS	FKBP5	CCDS4808.1	r.?	-	-	Del	intronic	D	35562379	35562391	2	10	270.045	-	-	5	1	1	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	6	4	37	19	37	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407085	6	35613217	TA	T	300	PASS	FKBP5	CCDS4808.1	r.?	-	-	Del	intronic	D	35613217	35613225	1	12	265.228	-	-	7	1	-	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	5	3	30	16	30	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407273	6	36082522	TA	T	300	PASS	MAPK14	CCDS4815.1	r.?	-	-	Del	downstream	D	36082522	36082532	1	10	270.045	-	-	9	1	1	MAPK14|CCDS4815.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MAPK14|CCDS4815.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	14	13	14	0	0	./.	4	1	6	3	33	17	33	17	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407283	6	36120162	TC	T	300	PASS	-	-	-	-	-	Del	-	D	36120162	36120168	1	6	270.045	-	-	5	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	0	5	0	20	12	20	12	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407539	6	36882973	T	TG	360	PASS	C6orf89	CCDS4827.1	r.?	-	-	Ins	intronic	I	36882973	36882981	1	15	319.839	-	-	7	1	1	C6orf89|CCDS4827.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf89|CCDS4827.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	12	0	0	./.	2	4	4	5	23	28	23	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407543	6	36903069	CT	C	300	PASS	-	-	-	-	-	Del	-	D	36903069	36903078	1	6	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	25	11	25	11	0	0	./.	0	5	0	8	4	36	4	36	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407588	6	37031289	CA	C	300	PASS	-	-	-	-	-	Del	-	D	37031289	37031299	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	2	4	3	14	3	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407693	6	37298421	CA	C	360	PASS	TBC1D22B	CCDS4832.1	r.?	-	-	Del	intronic	D	37298421	37298430	1	16	324.054	-	-	8	1	1	TBC1D22B|CCDS4832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D22B|CCDS4832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	3	3	4	22	24	22	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407744	6	37396868	CT	C	780	PASS	FTSJD2	CCDS4835.1	r.?	-	-	Del	upstream	D	37396868	37396877	1	56	696.698	-	-	8	1	1	FTSJD2|CCDS4835.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FTSJD2|CCDS4835.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	9	6	9	0	0	./.	6	7	8	11	30	28	30	28	8	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407766	6	37466046	GA	G	329	PASS	C6orf129	CCDS34441.1	r.?	-	-	Del	intronic	D	37466046	37466054	1	15	323.452	-	-	7	1	1	C6orf129|CCDS34441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf129|CCDS34441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	8	8	31	39	31	39	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407839	6	37661101	G	GA	420	PASS	MDGA1	CCDS47417.1	r.?	-	-	Ins	intronic	I	37661101	37661109	1	18	373.246	-	-	7	1	1	MDGA1|CCDS47417.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MDGA1|CCDS47417.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	5	2	9	3	36	22	37	22	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760407945	6	37889148	GT	G	329	PASS	ZFAND3	CCDS4836.1	r.?	-	-	Del	intronic	D	37889148	37889158	1	15	324.054	-	-	9	1	1	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	2	4	3	6	10	31	10	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408056	6	38138752	ACTC	A	298	PASS	BTBD9	CCDS47418.1	r.5997_5999delGAG	c.?	p.?	Del	3'UTR variant	D	38138752	38138758	3	7	322.85	-	-	1	1	1	BTBD9|CCDS47418.1|r.5997_5999delGAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	BTBD9|CCDS47418.1|r.5997_5999delGAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	5	9	5	9	0	0	./.	6	0	9	0	39	5	39	5	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408075	6	38191120	AT	A	360	PASS	BTBD9	CCDS47418.1	r.?	-	-	Del	intronic	D	38191120	38191128	1	15	324.054	-	-	7	1	1	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	4	4	6	28	29	28	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408109	6	38323869	C	CT	360	PASS	BTBD9	CCDS47418.1	r.?	-	-	Ins	intronic	I	38323869	38323879	1	15	320.441	-	-	9	1	1	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	4	4	6	17	28	17	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408196	6	38662028	GA	G	540	PASS	GLO1	CCDS4837.1	r.?	-	-	Del	intronic	D	38662028	38662038	1	42	592.895	-	-	9	1	1	GLO1|CCDS4837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLO1|CCDS4837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	6	5	10	28	27	28	27	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408361	6	39124531	GA	G	480	PASS	-	-	-	-	-	Del	-	D	39124531	39124538	1	24	432.072	-	-	6	1	1	-	-	./.	0	0	0	0	12	3	12	3	0	0	./.	3	5	3	6	33	28	33	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408383	6	39202404	CT	C	269	PASS	-	-	-	-	-	Del	-	D	39202404	39202414	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	6	3	27	14	27	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408442	6	39376283	TA	T	300	PASS	KIF6	CCDS4844.1	r.?	-	-	Del	intronic	D	39376283	39376290	1	10	270.045	-	-	6	1	1	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	1	4	20	25	20	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408472	6	39555287	A	ATC	360	PASS	KIF6	CCDS4844.1	r.?	-	-	Ins	intronic	I	39555287	39555300	2	15	312.615	-	-	6	1	1	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	5	4	23	19	24	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408558	6	39871116	AG	A	480	PASS	MOCS1	CCDS4846.1	r.?	-	-	Del	downstream	D	39871116	39871123	1	24	430.266	-	-	6	1	1	MOCS1|CCDS4846.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DAAM2|ENST00000398904|r.4693delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	6	4	30	25	30	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408559	6	39871524	C	CG	300	PASS	MOCS1	CCDS4846.1	r.?	-	-	Ins	downstream	I	39871524	39871532	1	12	262.218	-	-	7	1	1	MOCS1|CCDS4846.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	DAAM2|ENST00000398904|r.5100_5101insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	4	5	23	27	23	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408590	6	40015443	CT	C	420	PASS	-	-	-	-	-	Del	-	D	40015443	40015452	1	20	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	5	4	31	21	31	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408655	6	40236166	GC	G	420	PASS	-	-	-	-	-	Del	-	D	40236166	40236172	1	20	378.063	-	-	5	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	4	3	5	6	16	30	16	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408702	6	40393632	TG	T	480	PASS	LRFN2	CCDS34443.1	r.?	-	-	Del	intronic	D	40393632	40393637	1	21	432.072	-	-	4	1	1	LRFN2|CCDS34443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRFN2|CCDS34443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	6	3	7	40	40	40	40	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408762	6	40642772	CT	C	360	PASS	-	-	-	-	-	Del	-	D	40642772	40642781	1	12	321.044	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	1	5	3	6	25	20	25	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408802	6	40876834	CT	C	300	PASS	-	-	-	-	-	Del	-	D	40876834	40876841	1	10	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	4	1	5	2	24	33	24	33	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408821	6	40984965	TA	T	360	PASS	-	-	-	-	-	Del	-	D	40984965	40984975	1	15	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	2	4	5	5	30	28	30	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760408856	6	41174937	GA	G	360	PASS	-	-	-	-	-	Del	-	D	41174937	41174946	1	15	323.452	-	-	8	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	4	3	4	26	26	26	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409062	6	41902385	CT	C	360	PASS	CCND3	CCDS47426.1	r.?	-	-	Del	downstream	D	41902385	41902395	1	7	324.054	-	-	9	1	1	CCND3|CCDS47426.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	CCND3|CCDS47426.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	10	10	10	10	0	0	./.	6	0	9	0	24	21	24	21	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409115	6	41973738	CA	C	300	PASS	CCND3	CCDS47426.1	r.?	-	-	Del	intronic	D	41973738	41973745	1	10	262.218	-	-	6	1	1	CCND3|CCDS47426.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCND3|CCDS47426.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	1	4	1	4	1	27	1	27	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409172	6	42106736	A	AT	420	PASS	C6orf132	CCDS47428.1	r.?	-	-	Ins	intronic	I	42106736	42106744	1	20	373.848	-	-	7	1	1	C6orf132|CCDS47428.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf132|CCDS47428.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	4	3	4	3	35	20	35	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409303	6	42489647	TA	T	360	PASS	-	-	-	-	-	Del	-	D	42489647	42489657	1	15	321.044	-	-	9	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	2	4	2	6	26	21	26	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409433	6	42751167	TG	T	478	PASS	KIAA0240	CCDS34451.1	r.?	-	-	Del	intronic	D	42751167	42751175	1	28	484.877	-	-	7	1	1	KIAA0240|CCDS34451.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA0240|CCDS34451.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	6	4	6	26	32	26	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409443	6	42776746	AT	A	480	PASS	KIAA0240	CCDS34451.1	r.?	-	-	Del	intronic	D	42776746	42776754	1	21	432.072	-	-	7	1	1	KIAA0240|CCDS34451.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA0240|CCDS34451.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	6	3	8	18	33	18	33	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409482	6	42910293	CA	C	300	PASS	CNPY3	CCDS4875.1	r.?	-	-	Del	downstream	D	42910293	42910303	1	12	267.035	-	-	9	1	1	CNPY3|CCDS4875.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CNPY3|ENST00000336842|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	5	4	23	29	23	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760409684	6	43496796	G	GA	300	PASS	XPO5	CCDS47430.1	r.?	-	-	Ins	intronic	I	43496796	43496803	1	10	265.83	-	-	6	1	1	XPO5|CCDS47430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XPO5|CCDS47430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	2	4	12	25	13	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410090	6	44746691	AT	A	480	PASS	-	-	-	-	-	Del	-	D	44746691	44746699	1	25	432.072	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	4	4	7	34	30	34	30	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410164	6	44947279	T	TC	420	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Ins	intronic	I	44947279	44947280	1	20	372.644	-	-	0	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	3	4	25	24	25	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410207	6	45077086	TA	T	300	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Del	intronic	D	45077086	45077096	1	6	270.045	-	-	9	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	0	5	1	7	5	20	5	20	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410282	6	45283008	CA	C	360	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Del	intronic	D	45283008	45283018	1	16	323.452	-	-	9	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	5	4	37	27	37	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410314	6	45358810	G	GA	300	PASS	RUNX2	CCDS43467.1	r.?	-	-	Ins	intronic	I	45358810	45358817	1	12	264.626	-	-	6	1	1	RUNX2|CCDS43467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RUNX2|CCDS43467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	4	27	14	27	14	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410354	6	45516250	TA	T	360	PASS	RUNX2	CCDS43467.1	r.2985delA	c.?	p.?	Del	3'UTR variant	D	45516250	45516257	1	12	320.441	-	-	6	1	1	RUNX2|CCDS43467.1|r.2985delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RUNX2|CCDS43467.1|r.2985delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	9	9	9	0	0	./.	5	1	7	1	35	4	35	4	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410367	6	45542645	GA	G	300	PASS	AL161907.3	ENST00000513698	r.?	-	-	Del	intronic	D	45542645	45542655	1	10	270.045	-	-	9	1	1	AL161907.3|ENST00000513698|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL161907.3|ENST00000513698|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	2	7	20	34	20	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410391	6	45675618	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	45675618	45675623	1	24	425.449	-	-	4	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	3	5	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410444	6	45864646	TA	T	420	PASS	CLIC5	CCDS47438.1	r.?	-	-	Del	downstream	D	45864646	45864654	1	18	378.063	-	-	7	1	1	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	10	5	10	0	0	./.	5	2	6	3	29	21	29	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410457	6	45904798	CA	C	480	PASS	CLIC5	CCDS47438.1	r.?	-	-	Del	intronic	D	45904798	45904808	1	21	430.266	-	-	9	1	1	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	6	3	6	22	27	22	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410468	6	45935526	AAG	A	600	PASS	CLIC5	CCDS47438.1	r.?	-	-	Del	intronic	D	45935526	45935545	2	32	540.09	-	-	9	1	1	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	7	7	8	33	27	33	27	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410516	6	46119085	TA	T	300	PASS	ENPP4	CCDS34468.1	r.?	-	-	Del	downstream	D	46119085	46119095	1	12	270.045	-	-	9	1	1	ENPP4|CCDS34468.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENPP4|CCDS34468.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	3	23	13	23	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410542	6	46208614	GA	G	360	PASS	RCAN2	CCDS43469.1	r.?	-	-	Del	intronic	D	46208614	46208622	1	16	324.054	-	-	7	1	1	RCAN2|CCDS43469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RCAN2|CCDS43469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	4	3	31	26	31	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410793	6	47230250	TG	T	300	PASS	TNFRSF21	CCDS4921.1	r.?	-	-	Del	intronic	D	47230250	47230257	1	12	270.045	-	-	6	1	1	TNFRSF21|CCDS4921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNFRSF21|CCDS4921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	2	3	3	4	23	33	23	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410974	6	47682960	CA	C	360	PASS	GPR115	CCDS4922.2	r.?	-	-	Del	intronic	D	47682960	47682968	1	16	324.054	-	-	7	1	1	GPR115|CCDS4922.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR115|CCDS4922.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	4	3	24	20	24	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760410999	6	47746797	GA	G	420	PASS	OPN5	CCDS4923.1	r.?	-	-	Del	upstream	D	47746797	47746807	1	18	376.257	-	-	9	1	1	OPN5|CCDS4923.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	OPN5|CCDS4923.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	20	15	20	0	0	./.	2	5	4	8	20	36	20	36	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411200	6	48489365	TA	T	420	PASS	-	-	-	-	-	Del	-	D	48489365	48489375	1	18	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	5	2	6	26	25	26	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411246	6	48665165	CA	C	420	PASS	-	-	-	-	-	Del	-	D	48665165	48665174	1	18	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	5	2	7	2	30	13	30	13	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411460	6	49530902	GC	G	420	PASS	-	-	-	-	-	Del	-	D	49530902	49530909	1	18	378.063	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	5	4	5	25	23	25	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411479	6	49577603	TA	T	300	PASS	RHAG	CCDS4927.1	r.?	-	-	Del	intronic	D	49577603	49577613	1	10	270.045	-	-	9	1	1	RHAG|CCDS4927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RHAG|CCDS4927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	4	5	21	22	21	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411550	6	49871743	CT	C	360	PASS	-	-	-	-	-	Del	-	D	49871743	49871753	1	12	322.85	-	-	9	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	1	5	1	5	7	27	7	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411559	6	49908532	AT	A	254	PASS	-	-	-	-	-	Del	-	D	49908532	49908540	1	12	270.045	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	5	3	22	17	22	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411716	6	50545534	TA	T	300	PASS	-	-	-	-	-	Del	-	D	50545534	50545543	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	2	3	2	4	8	25	8	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411717	6	50546072	GA	G	360	PASS	-	-	-	-	-	Del	-	D	50546072	50546080	1	12	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	5	1	9	3	36	21	36	21	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411770	6	50762133	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	50762133	50762149	2	12	267.637	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	5	4	24	27	24	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760411858	6	51073984	CA	C	420	PASS	-	-	-	-	-	Del	-	D	51073984	51073991	1	18	376.859	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	5	2	5	2	24	8	24	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412118	6	52001578	GA	G	360	PASS	-	-	-	-	-	Del	-	D	52001578	52001587	1	7	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	0	6	1	9	14	33	14	33	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412233	6	52346991	AT	A	329	PASS	EFHC1	CCDS4942.1	r.?	-	-	Del	intronic	D	52346991	52346994	1	12	324.054	-	-	2	1	1	EFHC1|CCDS4942.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFHC1|CCDS4942.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	1	5	3	5	9	25	9	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412276	6	52460944	CT	C	300	PASS	-	-	-	-	-	Del	-	D	52460944	52460953	1	10	269.443	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	1	6	3	28	16	28	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412332	6	52550399	AG	A	360	PASS	TMEM14A	CCDS4943.1	r.?	-	-	Del	intronic	D	52550399	52550402	1	16	323.452	-	-	2	1	1	TMEM14A|CCDS4943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM14A|CCDS4943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	6	7	31	30	31	30	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412397	6	52843612	GA	G	629	PASS	GSTA4	CCDS4948.1	r.?	-	-	Del	intronic	D	52843612	52843622	1	42	590.486	-	-	9	1	1	GSTA4|CCDS4948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GSTA4|CCDS4948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	6	5	6	6	17	31	17	31	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412534	6	53217282	TC	T	540	PASS	ELOVL5	CCDS4951.1	r.?	-	-	Del	upstream	D	53217282	53217289	1	30	486.081	-	-	6	1	1	ELOVL5|CCDS4951.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ELOVL5|CCDS4951.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	6	11	6	0	0	./.	4	5	6	8	38	26	38	26	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412813	6	54166208	CA	C	360	PASS	-	-	-	-	-	Del	-	D	54166208	54166218	1	12	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	1	5	2	6	19	26	19	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412853	6	54375544	CA	C	360	PASS	-	-	-	-	-	Del	-	D	54375544	54375550	1	7	324.054	-	-	5	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	0	6	0	6	0	18	0	18	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412857	6	54396622	A	AT	296	PASS	-	-	-	-	-	Ins	-	I	54396622	54396631	1	18	373.848	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	2	5	2	7	24	35	24	35	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412906	6	54555782	CT	C	337	PASS	-	-	-	-	-	Del	-	D	54555782	54555791	1	15	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	4	4	31	20	31	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412965	6	54722689	GA	G	480	PASS	FAM83B	CCDS34479.1	r.?	-	-	Del	intronic	D	54722689	54722698	1	21	432.072	-	-	8	1	1	FAM83B|CCDS34479.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM83B|CCDS34479.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	6	2	7	3	31	20	31	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760412989	6	54788628	CTT	C	269	PASS	FAM83B	CCDS34479.1	r.?	-	-	Del	intronic	D	54788628	54788632	2	10	270.045	-	-	3	1	1	FAM83B|CCDS34479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM83B|CCDS34479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	1	4	1	5	22	13	22	13	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413116	6	55137582	C	CA	360	PASS	HCRTR2	CCDS4956.1	r.?	-	-	Ins	intronic	I	55137582	55137589	1	16	320.441	-	-	6	1	1	HCRTR2|CCDS4956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HCRTR2|CCDS4956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	3	3	24	16	24	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413139	6	55186101	GT	G	300	PASS	-	-	-	-	-	Del	-	D	55186101	55186111	1	10	268.841	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	6	2	32	30	32	30	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413154	6	55244771	TA	T	300	PASS	GFRAL	CCDS4957.1	r.?	-	-	Del	intronic	D	55244771	55244779	1	12	270.045	-	-	7	1	1	GFRAL|CCDS4957.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GFRAL|CCDS4957.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	4	3	30	16	30	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413204	6	55403486	A	AT	300	PASS	HMGCLL1	CCDS43475.1	r.?	-	-	Ins	intronic	I	55403486	55403495	1	10	267.035	-	-	8	1	1	HMGCLL1|CCDS43475.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMGCLL1|CCDS43475.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	1	4	2	4	19	18	20	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413525	6	56510302	CA	C	360	PASS	DST	CCDS47441.1	r.?	-	-	Del	intronic	D	56510302	56510310	1	15	323.452	-	-	7	1	1	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	5	3	26	33	26	33	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413537	6	56559545	TG	T	360	PASS	DST	CCDS47441.1	r.?	-	-	Del	intronic	D	56559545	56559552	1	16	324.054	-	-	6	1	1	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	3	3	5	4	20	14	20	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760413931	6	57331775	TAGG	T	569	PASS	PRIM2	ENST00000425433	r.?	-	-	Del	intronic	D	57331775	57331781	3	35	540.09	-	-	1	1	1	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	22	28	22	0	0	./.	6	4	7	5	61	56	61	56	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760414896	6	58173514	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	58173514	58173522	1	14	373.848	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	6	1	7	26	31	26	31	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415008	6	58585400	AG	A	360	PASS	-	-	-	-	-	Del	-	D	58585400	58585407	1	15	324.054	-	-	6	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	4	2	6	3	27	31	27	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415038	6	58660885	TA	T	300	PASS	-	-	-	-	-	Del	-	D	58660885	58660892	1	12	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	3	20	3	20	0	0	./.	3	2	3	2	24	25	24	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415194	6	61880563	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	61880563	61880569	1	18	370.236	-	-	5	1	1	-	-	./.	0	0	0	0	9	15	9	16	0	0	./.	5	2	5	5	17	23	17	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415301	6	62215329	CT	C	420	PASS	-	-	-	-	-	Del	-	D	62215329	62215336	1	8	378.063	-	-	6	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	7	0	8	1	33	23	33	23	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415434	6	62587353	TG	T	300	PASS	KHDRBS2	CCDS4963.1	r.?	-	-	Del	intronic	D	62587353	62587355	1	10	270.045	-	-	1	1	-	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	1	4	1	8	7	31	7	31	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415442	6	62605224	CA	C	360	PASS	KHDRBS2	CCDS4963.1	r.?	-	-	Del	intronic	D	62605224	62605234	1	12	324.054	-	-	9	1	1	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	1	8	1	33	6	33	6	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415575	6	63216252	CT	C	420	PASS	-	-	-	-	-	Del	-	D	63216252	63216261	1	14	376.859	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	1	6	2	24	14	24	14	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415588	6	63356853	TG	T	420	PASS	-	-	-	-	-	Del	-	D	63356853	63356860	1	14	378.063	-	-	6	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	6	1	7	3	37	29	37	29	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415638	6	63584650	AG	A	300	PASS	-	-	-	-	-	Del	-	D	63584650	63584657	1	12	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	3	3	32	21	32	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760415742	6	64051646	CT	C	480	PASS	-	-	-	-	-	Del	-	D	64051646	64051656	1	21	431.47	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	6	6	7	32	25	32	25	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416131	6	65409035	TA	T	360	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	65409035	65409043	1	16	324.054	-	-	7	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	3	3	23	22	23	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416139	6	65426659	AT	A	540	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	65426659	65426669	1	28	478.254	-	-	9	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	6	4	7	25	37	25	37	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416255	6	66001427	TA	T	480	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	66001427	66001435	1	21	432.072	-	-	7	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	19	7	19	0	0	./.	6	2	8	5	33	28	33	28	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416349	6	66319964	TC	T	300	PASS	EYS	CCDS47446.1	r.?	-	-	Del	intronic	D	66319964	66319966	1	12	270.045	-	-	1	1	1	EYS|CCDS47446.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47446.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	3	4	19	22	19	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416382	6	66535800	AT	A	360	PASS	-	-	-	-	-	Del	-	D	66535800	66535809	1	12	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	1	5	1	7	2	21	2	21	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416945	6	68064059	GA	G	300	PASS	-	-	-	-	-	Del	-	D	68064059	68064066	1	12	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	8	4	25	25	25	25	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760416977	6	68199661	CA	C	720	PASS	-	-	-	-	-	Del	-	D	68199661	68199667	1	48	647.506	-	-	5	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	7	5	8	6	26	28	26	28	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417152	6	68762052	TA	T	300	PASS	-	-	-	-	-	Del	-	D	68762052	68762059	1	12	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	11	23	11	23	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417164	6	68826389	GA	G	420	PASS	-	-	-	-	-	Del	-	D	68826389	68826398	1	18	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	5	4	6	19	22	19	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417325	6	69367306	TA	T	300	PASS	BAI3	CCDS4968.1	r.?	-	-	Del	intronic	D	69367306	69367312	1	12	270.045	-	-	5	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	2	3	3	5	21	14	21	14	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417331	6	69410251	CT	C	420	PASS	BAI3	CCDS4968.1	r.?	-	-	Del	intronic	D	69410251	69410261	1	18	378.063	-	-	9	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	5	2	5	3	22	21	22	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417382	6	69563636	CA	C	300	PASS	BAI3	CCDS4968.1	r.?	-	-	Del	intronic	D	69563636	69563646	1	12	270.045	-	-	9	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	3	2	3	3	24	16	24	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417458	6	69763075	TA	T	300	PASS	BAI3	CCDS4968.1	r.?	-	-	Del	intronic	D	69763075	69763085	1	12	270.045	-	-	9	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	3	2	4	4	27	16	27	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417651	6	70435108	C	CA	300	PASS	LMBRD1	CCDS4969.1	r.?	-	-	Ins	intronic	I	70435108	70435116	1	10	267.035	-	-	7	1	1	LMBRD1|CCDS4969.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMBRD1|CCDS4969.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	1	4	4	4	21	22	21	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417756	6	70893336	T	TA	360	PASS	COL19A1	CCDS4970.1	r.?	-	-	Ins	intronic	I	70893336	70893343	1	15	320.441	-	-	6	1	1	COL19A1|CCDS4970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL19A1|CCDS4970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	3	4	25	31	26	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417762	6	70902209	G	GT	420	PASS	COL19A1	CCDS4970.1	r.?	-	-	Ins	intronic	I	70902209	70902218	1	18	373.848	-	-	8	1	1	COL19A1|CCDS4970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL19A1|CCDS4970.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	5	3	9	27	24	27	25	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417884	6	71416176	A	AT	300	PASS	SMAP1	CCDS43478.1	r.?	-	-	Ins	intronic	I	71416176	71416179	1	6	267.035	-	-	2	1	1	SMAP1|CCDS43478.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMAP1|CCDS43478.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	0	5	0	5	15	31	15	32	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760417988	6	71823393	AT	A	360	PASS	-	-	-	-	-	Del	-	D	71823393	71823401	1	16	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	4	6	22	32	22	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418005	6	71932777	AT	A	420	PASS	-	-	-	-	-	Del	-	D	71932777	71932787	1	20	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	4	3	8	3	35	23	35	23	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418206	6	72670596	GA	G	300	PASS	RIMS1	CCDS47449.1	r.?	-	-	Del	intronic	D	72670596	72670606	1	6	270.045	-	-	9	1	1	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	0	5	1	33	21	33	21	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418224	6	72777990	CT	C	420	PASS	RIMS1	CCDS47449.1	r.?	-	-	Del	intronic	D	72777990	72777999	1	8	378.063	-	-	8	1	1	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	0	9	1	31	12	31	12	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418264	6	72917545	AT	A	600	PASS	RIMS1	CCDS47449.1	r.?	-	-	Del	intronic	D	72917545	72917552	1	32	538.284	-	-	6	1	1	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	7	3	7	4	27	21	27	21	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418319	6	73155904	TA	T	420	PASS	-	-	-	-	-	Del	-	D	73155904	73155914	1	20	376.859	-	-	9	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	5	4	39	28	39	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418422	6	73503042	CA	C	360	PASS	KCNQ5	CCDS4976.1	r.?	-	-	Del	intronic	D	73503042	73503052	1	15	324.054	-	-	9	1	1	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	4	16	25	16	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418486	6	73811959	G	GA	360	PASS	KCNQ5	CCDS4976.1	r.?	-	-	Ins	intronic	I	73811959	73811967	1	16	320.441	-	-	7	1	1	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	3	3	3	35	23	36	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418498	6	73858660	AAT	A	480	PASS	KCNQ5	CCDS4976.1	r.?	-	-	Del	intronic	D	73858660	73858664	2	24	431.47	-	-	1	1	1	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	3	5	3	6	29	24	29	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418543	6	73930297	CA	C	300	PASS	KHDC1	CCDS47450.1	r.?	-	-	Del	intronic	D	73930297	73930305	1	10	270.045	-	-	7	1	1	KHDC1|CCDS47450.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	KHDC1|CCDS47450.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	4	1	7	1	27	9	27	9	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418611	6	74100893	AT	A	300	PASS	DDX43	CCDS4977.1	r.?	-	-	Del	upstream	D	74100893	74100902	1	6	270.045	-	-	8	1	1	DDX43|CCDS4977.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	OOEP|ENST00000370363|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	5	0	7	0	31	2	31	2	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418677	6	74244974	TA	T	329	PASS	-	-	-	-	-	Del	-	D	74244974	74244983	1	12	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	1	5	2	6	16	35	16	35	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418734	6	74356115	AT	A	300	PASS	SLC17A5	CCDS4981.1	r.?	-	-	Del	intronic	D	74356115	74356125	1	6	270.045	-	-	9	1	1	SLC17A5|CCDS4981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC17A5|CCDS4981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	0	5	0	19	6	19	6	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418766	6	74422197	CT	C	300	PASS	CD109	CCDS4982.1	r.?	-	-	Del	intronic	D	74422197	74422207	1	10	270.045	-	-	9	1	1	CD109|CCDS4982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD109|CCDS4982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	4	2	4	23	18	23	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418802	6	74587428	GA	G	360	PASS	-	-	-	-	-	Del	-	D	74587428	74587436	1	15	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	3	6	25	22	25	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418880	6	74923544	TG	T	360	PASS	-	-	-	-	-	Del	-	D	74923544	74923551	1	15	324.054	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	4	3	22	30	22	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760418970	6	75424308	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	75424308	75424315	1	10	267.035	-	-	6	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	4	1	5	1	14	3	14	3	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419040	6	75866248	TA	T	300	PASS	COL12A1	CCDS43482.1	r.3294-10delu	c.2984-10delt	p.?	Del	splice region	D	75866248	75866253	1	12	270.045	-	-	4	1	1	COL12A1|CCDS43482.1|r.3294-10delu|c.2984-10delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	COL12A1|CCDS43482.1|r.3294-10delu|c.2984-10delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	13	7	13	7	0	0	./.	2	3	3	3	21	13	21	13	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419041	6	75884273	CA	C	480	PASS	COL12A1	CCDS43482.1	r.?	-	-	Del	intronic	D	75884273	75884283	1	21	432.072	-	-	9	1	1	COL12A1|CCDS43482.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL12A1|CCDS43482.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	6	2	9	5	31	29	31	29	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419071	6	75973684	T	TA	300	PASS	TMEM30A	CCDS47453.1	r.?	-	-	Ins	intronic	I	75973684	75973691	1	6	267.035	-	-	6	1	1	TMEM30A|CCDS47453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM30A|CCDS47453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	12	6	12	0	0	./.	5	0	6	0	29	1	29	1	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419085	6	76017044	CT	C	300	PASS	FILIP1	CCDS4984.1	r.?	-	-	Del	downstream	D	76017044	76017053	1	12	270.045	-	-	8	1	1	FILIP1|CCDS4984.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FILIP1|ENST00000393004|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	3	2	3	3	21	25	21	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419158	6	76265731	GA	G	360	PASS	-	-	-	-	-	Del	-	D	76265731	76265740	1	15	323.452	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	4	4	4	15	25	15	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419193	6	76345762	TA	T	300	PASS	SENP6	CCDS47454.1	r.?	-	-	Del	intronic	D	76345762	76345772	1	10	270.045	-	-	9	1	1	SENP6|CCDS47454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SENP6|CCDS47454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	1	4	3	6	13	28	13	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419294	6	76638339	TA	T	300	PASS	IMPG1	CCDS4985.1	r.?	-	-	Del	intronic	D	76638339	76638348	1	10	270.045	-	-	8	1	1	IMPG1|CCDS4985.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMPG1|CCDS4985.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	4	1	35	37	35	37	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419440	6	77350654	TA	T	600	PASS	-	-	-	-	-	Del	-	D	77350654	77350664	1	35	540.09	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	4	6	5	27	20	27	20	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419468	6	77451160	AT	A	269	PASS	-	-	-	-	-	Del	-	D	77451160	77451169	1	10	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	4	1	5	1	36	3	36	3	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419885	6	78875522	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	78875522	78875529	1	12	267.035	-	-	6	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	2	3	3	3	16	15	16	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760419912	6	78944253	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	78944253	78944260	2	10	270.045	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	2	7	23	33	23	33	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420032	6	79291655	CA	C	420	PASS	-	-	-	-	-	Del	-	D	79291655	79291665	1	18	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	2	6	2	29	7	29	7	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420135	6	79713405	TA	T	300	PASS	PHIP	CCDS4987.1	r.?	-	-	Del	intronic	D	79713405	79713415	1	10	268.841	-	-	9	1	1	PHIP|CCDS4987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHIP|CCDS4987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	1	4	1	5	8	12	8	12	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420244	6	80191212	TA	T	540	PASS	LCA5	CCDS4990.1	r.?	-	-	Del	downstream	D	80191212	80191221	1	18	486.081	-	-	8	1	1	LCA5|CCDS4990.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LCA5|CCDS4990.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	14	12	14	0	0	./.	1	8	4	9	19	32	19	32	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420252	6	80226697	CA	C	300	PASS	LCA5	CCDS4990.1	r.?	-	-	Del	intronic	D	80226697	80226706	1	10	270.045	-	-	8	1	1	LCA5|CCDS4990.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LCA5|CCDS4990.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	4	1	6	1	31	1	31	1	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420328	6	80499316	GT	G	269	PASS	-	-	-	-	-	Del	-	D	80499316	80499325	1	10	253.187	-	-	8	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	1	4	1	6	23	28	23	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420520	6	81118431	AT	A	300	PASS	-	-	-	-	-	Del	-	D	81118431	81118438	1	12	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	2	3	4	5	21	26	21	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420526	6	81165947	AG	A	300	PASS	-	-	-	-	-	Del	-	D	81165947	81165949	1	12	270.045	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	2	4	19	24	19	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420541	6	81252783	G	GAT	360	PASS	-	-	-	-	-	Ins	-	I	81252783	81252795	2	16	316.829	-	-	5	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	3	5	3	33	23	33	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420544	6	81265464	CT	C	300	PASS	-	-	-	-	-	Del	-	D	81265464	81265474	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	3	3	32	25	32	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420652	6	81917274	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	81917274	81917281	1	24	480.06	-	-	6	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	7	2	7	29	31	29	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420654	6	81977522	TA	T	300	PASS	-	-	-	-	-	Del	-	D	81977522	81977532	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	3	3	11	10	11	10	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420671	6	82086664	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	82086664	82086668	1	6	266.432	-	-	3	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	0	5	1	5	24	26	24	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420686	6	82159845	CT	C	360	PASS	-	-	-	-	-	Del	-	D	82159845	82159854	1	12	324.054	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	1	5	1	22	18	22	18	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420850	6	82853557	CT	C	360	PASS	-	-	-	-	-	Del	-	D	82853557	82853567	1	15	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	4	2	5	20	33	20	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420917	6	83033623	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	83033623	83033633	1	6	265.228	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	0	5	0	5	3	30	3	30	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760420919	6	83039224	GC	G	300	PASS	-	-	-	-	-	Del	-	D	83039224	83039231	1	6	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	6	3	31	18	31	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421128	6	83876277	CA	C	660	PASS	DOPEY1	CCDS4996.1	r.?	-	-	Del	intronic	D	83876277	83876287	1	36	594.099	-	-	9	1	1	DOPEY1|CCDS4996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGM3|ENST00000513973|r.4421delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	12	12	12	0	0	./.	3	8	4	11	25	28	25	28	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421149	6	83988718	TC	T	300	PASS	ME1	CCDS34492.1	r.?	-	-	Del	intronic	D	83988718	83988726	1	10	270.045	-	-	7	1	1	ME1|CCDS34492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ME1|CCDS34492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	1	4	2	5	22	31	22	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421234	6	84302874	G	GA	420	PASS	SNAP91	CCDS47455.1	r.?	-	-	Ins	intronic	I	84302874	84302883	1	20	373.246	-	-	8	1	1	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	3	4	4	5	35	32	35	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421263	6	84395634	CT	C	540	PASS	SNAP91	CCDS47455.1	r.?	-	-	Del	intronic	D	84395634	84395644	1	28	486.081	-	-	9	1	1	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	3	7	28	30	28	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421314	6	84616806	CT	C	360	PASS	CYB5R4	CCDS5000.2	r.?	-	-	Del	intronic	D	84616806	84616815	1	12	324.054	-	-	8	1	1	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	1	6	2	27	20	27	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421318	6	84634953	TG	T	360	PASS	CYB5R4	CCDS5000.2	r.?	-	-	Del	intronic	D	84634953	84634959	1	15	322.85	-	-	5	1	1	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	4	2	7	14	23	14	23	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421394	6	85021781	CT	C	300	PASS	-	-	-	-	-	Del	-	D	85021781	85021791	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	3	22	13	22	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421494	6	85326485	TA	T	480	PASS	-	-	-	-	-	Del	-	D	85326485	85326492	1	24	432.072	-	-	6	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	5	3	6	5	36	19	36	19	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421638	6	85897118	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	85897118	85897122	1	21	422.439	-	-	3	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	6	2	6	24	26	24	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421642	6	85910198	TG	T	449	PASS	-	-	-	-	-	Del	-	D	85910198	85910200	1	25	432.072	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	4	5	4	20	17	20	17	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421782	6	86349424	CA	C	300	PASS	SYNCRIP	CCDS5005.1	r.?	-	-	Del	intronic	D	86349424	86349434	1	10	270.045	-	-	9	1	1	SYNCRIP|CCDS5005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYNCRIP|CCDS5005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	1	5	2	27	27	27	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421831	6	86474373	GT	G	360	PASS	-	-	-	-	-	Del	-	D	86474373	86474380	1	12	324.054	-	-	6	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	5	1	5	3	38	18	38	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421843	6	86513120	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	86513120	86513129	1	12	266.432	-	-	8	1	1	-	-	./.	0	0	0	0	8	3	8	4	0	0	./.	2	3	2	3	26	26	26	26	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421890	6	86789862	TG	T	360	PASS	-	-	-	-	-	Del	-	D	86789862	86789868	1	15	324.054	-	-	5	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	4	2	6	3	21	18	21	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421898	6	86817381	GT	G	360	PASS	-	-	-	-	-	Del	-	D	86817381	86817391	1	16	322.85	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	6	3	27	17	27	17	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421904	6	86845310	CT	C	540	PASS	-	-	-	-	-	Del	-	D	86845310	86845320	1	28	486.081	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	6	4	7	20	23	20	23	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760421984	6	87197933	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	87197933	87197937	2	12	324.054	-	-	1	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	5	1	5	3	24	17	24	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422172	6	87776682	AT	A	449	PASS	-	-	-	-	-	Del	-	D	87776682	87776690	1	24	432.072	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	5	6	5	24	25	24	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422174	6	87784597	TA	T	480	PASS	-	-	-	-	-	Del	-	D	87784597	87784605	1	24	432.072	-	-	7	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	5	4	6	18	32	18	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422209	6	87864659	AGAG	A	300	PASS	ZNF292	CCDS47457.1	r.?	-	-	Del	upstream	D	87864659	87864669	3	12	270.045	-	-	3	1	1	ZNF292|CCDS47457.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZNF292|CCDS47457.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	7	10	7	0	0	./.	3	2	4	2	29	14	29	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422361	6	88262351	TA	T	540	PASS	RARS2	CCDS5011.1	r.?	-	-	Del	intronic	D	88262351	88262360	1	28	486.081	-	-	8	1	1	RARS2|CCDS5011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARS2|CCDS5011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	6	7	8	26	18	26	18	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422473	6	88559612	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	88559612	88559615	1	8	373.848	-	-	2	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	0	7	2	8	17	30	17	30	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422511	6	88727536	CA	C	300	PASS	-	-	-	-	-	Del	-	D	88727536	88727546	1	12	270.045	-	-	9	1	-	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	5	3	13	19	13	19	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422770	6	89814263	AT	A	300	PASS	SFRS13B	CCDS47459.1	r.?	-	-	Del	intronic	D	89814263	89814273	1	12	270.045	-	-	9	1	1	SFRS13B|CCDS47459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS13B|CCDS47459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	5	6	23	16	23	16	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760422940	6	90320852	AG	A	300	PASS	ANKRD6	CCDS47460.1	r.?	-	-	Del	intronic	D	90320852	90320858	1	12	269.443	-	-	5	1	1	ANKRD6|CCDS47460.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD6|CCDS47460.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	2	3	2	6	20	27	20	27	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423129	6	90678939	A	AT	300	PASS	BACH2	CCDS5026.1	r.?	-	-	Ins	intronic	I	90678939	90678947	1	10	264.626	-	-	7	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	1	4	2	5	25	25	25	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423145	6	90723467	T	TC	360	PASS	BACH2	CCDS5026.1	r.?	-	-	Ins	intronic	I	90723467	90723474	1	15	320.441	-	-	6	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	12	0	0	./.	4	2	4	2	27	19	27	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423192	6	90933365	G	GT	300	PASS	BACH2	CCDS5026.1	r.?	-	-	Ins	intronic	I	90933365	90933373	1	10	267.035	-	-	7	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	4	1	4	1	28	22	28	22	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423290	6	91336034	GT	G	435	PASS	-	-	-	-	-	Del	-	D	91336034	91336043	1	24	432.072	-	-	8	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	5	3	7	4	22	18	22	18	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423395	6	91805405	CT	C	480	PASS	-	-	-	-	-	Del	-	D	91805405	91805414	1	24	432.072	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	5	4	6	23	26	23	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423468	6	92102036	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	92102036	92102045	1	6	265.228	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	7	14	0	0	./.	0	5	0	6	5	34	5	34	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423482	6	92226340	CT	C	300	PASS	-	-	-	-	-	Del	-	D	92226340	92226350	1	10	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	2	4	19	26	19	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423527	6	92389356	TG	T	600	PASS	-	-	-	-	-	Del	-	D	92389356	92389364	1	32	539.488	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	7	3	10	3	37	23	37	23	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423569	6	92601170	TA	T	360	PASS	-	-	-	-	-	Del	-	D	92601170	92601178	1	12	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	1	7	3	26	20	26	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423671	6	92946329	C	CT	509	PASS	-	-	-	-	-	Ins	-	I	92946329	92946339	1	30	480.662	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	16	0	0	./.	5	4	6	5	26	25	26	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423691	6	93016379	TA	T	300	PASS	-	-	-	-	-	Del	-	D	93016379	93016388	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	2	3	3	4	27	23	27	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423704	6	93047239	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	93047239	93047246	1	25	426.051	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	4	4	6	25	28	25	29	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423708	6	93075888	AT	A	300	PASS	-	-	-	-	-	Del	-	D	93075888	93075895	1	12	270.045	-	-	6	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	3	2	4	4	23	15	23	15	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423814	6	93443531	TA	T	420	PASS	-	-	-	-	-	Del	-	D	93443531	93443540	1	20	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	5	3	30	15	30	15	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760423822	6	93467587	CT	C	480	PASS	-	-	-	-	-	Del	-	D	93467587	93467595	1	24	432.072	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	3	5	5	5	29	16	29	16	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424019	6	94166869	CT	C	480	PASS	-	-	-	-	-	Del	-	D	94166869	94166879	1	24	429.061	-	-	9	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	3	5	7	8	25	33	25	33	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424046	6	94251304	GA	G	360	PASS	-	-	-	-	-	Del	-	D	94251304	94251312	1	16	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	3	3	6	6	20	25	20	25	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424085	6	94407966	GA	G	360	PASS	-	-	-	-	-	Del	-	D	94407966	94407975	1	12	323.452	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	1	5	1	23	19	23	19	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424395	6	95546646	TTA	T	480	PASS	-	-	-	-	-	Del	-	D	95546646	95546650	2	24	426.051	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	5	3	6	20	20	20	20	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424428	6	95887202	TA	T	300	PASS	-	-	-	-	-	Del	-	D	95887202	95887210	1	12	270.045	-	-	7	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	3	3	3	20	35	20	35	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424553	6	96368826	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	96368826	96368830	1	20	371.44	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	3	5	5	23	18	24	18	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424726	6	96974385	GA	G	360	PASS	KIAA0776	CCDS5034.1	r.?	-	-	Del	intronic	D	96974385	96974395	1	12	324.054	-	-	9	1	1	KIAA0776|CCDS5034.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0776|CCDS5034.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	5	1	6	1	23	18	23	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424778	6	97180015	G	GAT	300	PASS	-	-	-	-	-	Ins	-	I	97180015	97180026	2	10	264.024	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	11	0	0	./.	4	1	4	3	23	18	23	18	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424876	6	97522408	CA	C	300	PASS	KLHL32	CCDS5038.1	r.?	-	-	Del	intronic	D	97522408	97522416	1	10	270.045	-	-	7	1	1	KLHL32|CCDS5038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL32|CCDS5038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	1	5	6	27	6	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760424959	6	97781028	AT	A	480	PASS	-	-	-	-	-	Del	-	D	97781028	97781033	1	24	431.47	-	-	4	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	3	5	3	26	26	26	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425002	6	98021675	TA	T	300	PASS	-	-	-	-	-	Del	-	D	98021675	98021684	1	10	268.239	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	1	4	8	19	8	19	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425155	6	98578567	TA	T	300	PASS	-	-	-	-	-	Del	-	D	98578567	98578573	1	12	270.045	-	-	5	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	3	2	24	22	24	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425247	6	98958288	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	98958288	98958298	1	10	267.035	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	6	2	27	18	27	18	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425377	6	99609729	GA	G	420	PASS	-	-	-	-	-	Del	-	D	99609729	99609737	1	20	378.063	-	-	7	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	4	3	5	12	29	12	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425526	6	99980609	TA	T	900	PASS	-	-	-	-	-	Del	-	D	99980609	99980619	1	70	808.93	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	9	9	9	23	24	23	24	9	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425914	6	101465758	GT	G	600	PASS	-	-	-	-	-	Del	-	D	101465758	101465768	1	11	540.09	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	0	10	0	10	2	20	2	20	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760425973	6	101848100	AT	A	540	PASS	GRIK2	CCDS5049.1	r.?	-	-	Del	intronic	D	101848100	101848108	1	30	484.275	-	-	7	1	1	GRIK2|CCDS5049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK2|CCDS5049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	4	7	4	22	37	22	37	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426321	6	103476115	AT	A	420	PASS	-	-	-	-	-	Del	-	D	103476115	103476124	1	20	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	4	4	19	19	19	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426464	6	104231763	CT	C	540	PASS	-	-	-	-	-	Del	-	D	104231763	104231768	1	24	486.081	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	7	2	8	23	26	23	26	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426496	6	104343186	TA	T	420	PASS	-	-	-	-	-	Del	-	D	104343186	104343196	1	8	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	7	0	9	0	27	4	27	4	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426504	6	104388857	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	104388857	104388860	1	45	640.281	-	-	2	1	1	-	-	./.	0	0	0	0	12	4	12	5	0	0	./.	4	8	5	8	32	23	32	23	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426576	6	104640141	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	104640141	104640151	1	10	266.432	-	-	9	1	1	-	-	./.	0	0	0	0	16	24	16	25	0	0	./.	1	4	1	7	17	31	17	32	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426741	6	105180658	G	GA	418	PASS	HACE1	CCDS5050.1	r.?	-	-	Ins	intronic	I	105180658	105180666	1	21	427.255	-	-	7	1	1	HACE1|CCDS5050.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HACE1|CCDS5050.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	2	6	3	8	17	31	19	33	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426824	6	105401933	TC	T	720	PASS	LIN28B	CCDS34504.1	r.?	-	-	Del	upstream	D	105401933	105401940	1	48	646.903	-	-	6	1	1	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	19	13	19	13	0	0	./.	5	7	5	9	45	34	45	34	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426828	6	105413238	CA	C	480	PASS	LIN28B	CCDS34504.1	r.?	-	-	Del	intronic	D	105413238	105413246	1	24	432.072	-	-	7	1	1	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	5	4	19	20	19	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426849	6	105461666	AT	A	360	PASS	LIN28B	CCDS34504.1	r.?	-	-	Del	intronic	D	105461666	105461673	1	15	324.054	-	-	6	1	1	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	4	2	4	2	14	24	14	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760426938	6	105748302	AT	A	480	PASS	PREP	CCDS5053.1	r.?	-	-	Del	intronic	D	105748302	105748310	1	24	432.072	-	-	7	1	1	PREP|CCDS5053.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PREP|CCDS5053.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	3	6	4	19	32	19	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427045	6	106146098	GT	G	300	PASS	-	-	-	-	-	Del	-	D	106146098	106146104	1	12	270.045	-	-	5	1	1	-	-	./.	0	0	0	0	12	3	12	3	0	0	./.	2	3	3	5	28	26	28	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427200	6	106683528	TA	T	297	PASS	ATG5	CCDS5055.1	r.?	-	-	Del	intronic	D	106683528	106683536	1	10	269.443	-	-	7	1	1	ATG5|CCDS5055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATG5|CCDS5055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	1	4	2	4	14	27	14	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427270	6	106876505	CAGAG	C	300	PASS	-	-	-	-	-	Del	-	D	106876505	106876515	4	12	270.045	-	-	4	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	2	3	4	3	27	13	27	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427279	6	106886076	TA	T	329	PASS	-	-	-	-	-	Del	-	D	106886076	106886082	1	15	324.054	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	4	2	26	24	26	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427356	6	107066755	T	TA	600	PASS	RTN4IP1	CCDS5056.1	r.?	-	-	Ins	intronic	I	107066755	107066764	1	35	532.263	-	-	8	1	1	RTN4IP1|CCDS5056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RTN4IP1|CCDS5056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	6	7	9	34	43	35	43	7	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427430	6	107299851	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	107299851	107299859	1	14	370.838	-	-	7	1	1	-	-	./.	0	0	0	0	11	6	14	6	0	0	./.	1	6	3	7	33	47	33	48	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427769	6	108211600	CT	C	265	PASS	SEC63	CCDS5061.1	r.?	-	-	Del	intronic	D	108211600	108211609	1	12	323.452	-	-	8	1	1	SEC63|CCDS5061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC63|CCDS5061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	1	5	2	25	19	25	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427811	6	108300637	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	108300637	108300644	1	12	267.035	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	3	3	20	26	20	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760427878	6	108507349	A	ATT	269	PASS	NR2E1	CCDS5063.1	r.?	-	-	Ins	intronic	I	108507349	108507359	2	10	255.595	-	-	9	1	1	NR2E1|CCDS5063.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NR2E1|CCDS5063.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	1	7	1	28	25	29	25	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428014	6	108984772	GC	G	268	PASS	FOXO3	CCDS5068.1	r.1080delC	c.737delC	p.R248fs*111	Del	frameshift	D	108984772	108984779	1	16	323.452	-	-	6	1	1	FOXO3|CCDS5068.1|r.1080delC|c.737delC|p.R248fs*111|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FOXO3|CCDS5068.1|r.1080delC|c.737delC|p.R248fs*111|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	7	6	7	0	0	./.	3	3	4	4	23	28	23	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428106	6	109302090	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	109302090	109302098	1	18	370.838	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	5	2	5	3	37	35	38	35	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428109	6	109335836	GT	G	360	PASS	SESN1	CCDS5070.1	r.?	-	-	Del	intronic	D	109335836	109335841	1	12	324.054	-	-	4	1	-	SESN1|CCDS5070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SESN1|CCDS5070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	5	1	5	2	21	20	21	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428116	6	109363733	CG	C	300	PASS	SESN1	CCDS5070.1	r.?	-	-	Del	intronic	D	109363733	109363735	1	6	268.841	-	-	1	1	1	SESN1|CCDS5070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SESN1|CCDS5070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	9	0	21	0	21	0	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428210	6	109696657	T	TA	420	PASS	CD164	CCDS5073.1	r.?	-	-	Ins	intronic	I	109696657	109696665	1	18	373.848	-	-	7	1	1	CD164|CCDS5073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CD164|CCDS5073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	2	5	3	7	22	27	22	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428354	6	110061287	CT	C	300	PASS	FIG4	CCDS5078.1	r.?	-	-	Del	intronic	D	110061287	110061294	1	12	270.045	-	-	6	1	1	FIG4|CCDS5078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FIG4|CCDS5078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	4	3	24	12	24	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428413	6	110275065	TA	T	300	PASS	-	-	-	-	-	Del	-	D	110275065	110275075	1	10	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	4	1	5	1	12	10	12	10	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428500	6	110700703	GA	G	540	PASS	-	-	-	-	-	Del	-	D	110700703	110700713	1	10	486.081	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	9	0	9	1	31	19	31	19	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428672	6	111317904	TA	T	420	PASS	RPF2	CCDS5088.1	r.?	-	-	Del	intronic	D	111317904	111317910	1	18	378.063	-	-	5	1	1	RPF2|CCDS5088.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPF2|CCDS5088.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	5	3	5	30	18	30	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428705	6	111409973	AT	A	420	PASS	SLC16A10	CCDS5089.1	r.?	-	-	Del	intronic	D	111409973	111409983	1	8	375.052	-	-	9	1	1	SLC16A10|CCDS5089.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC16A10|CCDS5089.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	0	7	1	7	16	17	16	17	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760428706	6	111423357	GT	G	360	PASS	SLC16A10	CCDS5089.1	r.?	-	-	Del	intronic	D	111423357	111423365	1	15	324.054	-	-	7	1	1	SLC16A10|CCDS5089.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC16A10|CCDS5089.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	2	4	2	7	11	27	11	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760429168	6	113317290	CA	C	360	PASS	-	-	-	-	-	Del	-	D	113317290	113317300	1	15	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	6	4	15	14	15	14	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760429635	6	114963341	CA	C	269	PASS	-	-	-	-	-	Del	-	D	114963341	114963350	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	2	3	4	5	22	27	22	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760429789	6	115509418	TA	T	360	PASS	-	-	-	-	-	Del	-	D	115509418	115509428	1	15	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	4	2	7	2	16	7	16	7	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760429907	6	115979153	AT	A	417	PASS	-	-	-	-	-	Del	-	D	115979153	115979161	1	14	375.052	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	1	6	3	21	20	21	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760430525	6	118572137	CA	C	300	PASS	SLC35F1	CCDS34524.1	r.?	-	-	Del	intronic	D	118572137	118572146	1	12	270.045	-	-	8	1	1	SLC35F1|CCDS34524.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F1|CCDS34524.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	2	3	2	4	24	21	24	21	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760430827	6	119572282	TA	T	300	PASS	MAN1A1	CCDS5122.1	r.?	-	-	Del	intronic	D	119572282	119572291	1	6	270.045	-	-	8	1	1	MAN1A1|CCDS5122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAN1A1|CCDS5122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	0	5	0	6	18	29	18	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760431369	6	121764399	CA	C	360	PASS	GJA1	CCDS5123.1	r.?	-	-	Del	intronic	D	121764399	121764409	1	15	324.054	-	-	9	1	1	GJA1|CCDS5123.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GJA1|CCDS5123.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	4	2	26	12	26	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760431659	6	122879122	AT	A	360	PASS	SERINC1	CCDS5125.1	r.?	-	-	Del	intronic	D	122879122	122879131	1	12	324.054	-	-	8	1	1	SERINC1|CCDS5125.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SERINC1|CCDS5125.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	5	3	20	17	20	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760431803	6	123302106	CT	C	360	PASS	-	-	-	-	-	Del	-	D	123302106	123302116	1	7	323.452	-	-	9	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	6	0	6	0	22	3	22	3	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432175	6	124921457	TA	T	420	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124921457	124921463	1	8	368.43	-	-	5	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	0	7	0	10	2	29	2	29	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432317	6	125574692	CTA	C	300	PASS	TPD52L1	CCDS43502.1	r.?	-	-	Del	intronic	D	125574692	125574697	2	6	270.045	-	-	2	1	1	TPD52L1|CCDS43502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPD52L1|CCDS43502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	0	5	0	6	1	16	1	16	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432327	6	125723016	GCA	G	426	PASS	-	-	-	-	-	Del	-	D	125723016	125723028	2	36	540.09	-	-	5	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	5	5	6	13	20	13	20	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432526	6	126797743	CT	C	360	PASS	-	-	-	-	-	Del	-	D	126797743	126797745	1	7	324.054	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	6	0	8	0	26	5	26	5	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432626	6	127544984	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	127544984	127544996	2	16	324.054	-	-	5	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	5	19	24	19	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432703	6	127783964	GTATT	G	360	PASS	C6orf174	CCDS34531.1	r.?	-	-	Del	intronic	D	127783964	127783982	4	15	324.054	-	-	4	1	1	C6orf174|CCDS34531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C6orf174|CCDS34531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	4	2	4	5	16	15	16	15	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432776	6	128258074	CA	C	360	PASS	-	-	-	-	-	Del	-	D	128258074	128258081	1	16	324.054	-	-	6	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	3	3	3	23	9	23	9	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760432960	6	129453863	AT	A	411	PASS	LAMA2	CCDS5138.1	r.?	-	-	Del	intronic	D	129453863	129453872	1	20	378.063	-	-	8	1	1	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	4	5	20	15	20	15	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760433107	6	130057851	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	130057851	130057859	1	12	320.441	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	1	5	2	18	13	18	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760433344	6	131152482	AT	A	780	PASS	-	-	-	-	-	Del	-	D	131152482	131152492	1	54	697.902	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	8	5	10	6	32	21	32	21	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760433702	6	132774341	C	CA	300	PASS	STX7	CCDS5153.1	r.?	-	-	Ins	downstream	I	132774341	132774350	1	6	266.432	-	-	8	1	1	STX7|CCDS5153.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	STX7|CCDS5153.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	8	14	8	0	0	./.	0	5	1	6	14	31	15	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760433776	6	133061458	AT	A	629	PASS	VNN2	CCDS5161.1	r.?	-	-	Del	downstream	D	133061458	133061464	1	42	594.099	-	-	5	1	1	VNN2|CCDS5161.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	VNN2|CCDS5161.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	14	14	14	0	0	./.	5	6	6	7	34	32	34	32	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760433797	6	133107898	CAG	C	480	PASS	C6orf192	CCDS5163.1	r.?	-	-	Del	intronic	D	133107898	133107915	2	24	432.072	-	-	8	1	1	C6orf192|CCDS5163.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf192|CCDS5163.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	3	5	3	29	22	29	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760433895	6	133357057	GA	G	360	PASS	-	-	-	-	-	Del	-	D	133357057	133357067	1	12	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	5	4	7	35	27	35	27	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760434080	6	134099452	AT	A	300	PASS	-	-	-	-	-	Del	-	D	134099452	134099462	1	12	270.045	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	16	13	16	13	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760434362	6	134943513	GA	G	360	PASS	-	-	-	-	-	Del	-	D	134943513	134943521	1	16	324.054	-	-	7	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	3	5	3	19	23	19	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760434444	6	135270800	CA	C	540	PASS	ALDH8A1	CCDS5171.1	r.?	-	-	Del	intronic	D	135270800	135270810	1	24	486.081	-	-	9	1	1	ALDH8A1|CCDS5171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALDH8A1|CCDS5171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	7	2	8	2	23	18	23	18	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760434673	6	136525142	GA	G	360	PASS	-	-	-	-	-	Del	-	D	136525142	136525152	1	12	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	1	5	3	5	24	23	24	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760434974	6	137745360	GT	G	360	PASS	-	-	-	-	-	Del	-	D	137745360	137745366	1	15	324.054	-	-	5	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	4	3	7	15	19	15	19	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760434996	6	137827413	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	137827413	137827422	1	20	373.246	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	3	5	3	29	20	29	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435064	6	138090906	TA	T	660	PASS	-	-	-	-	-	Del	-	D	138090906	138090912	1	40	594.099	-	-	5	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	7	4	8	26	31	26	31	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435210	6	138541775	CTT	C	300	PASS	KIAA1244	CCDS5189.2	r.?	-	-	Del	intronic	D	138541775	138541780	2	6	268.239	-	-	4	1	1	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	0	6	0	20	1	20	1	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435224	6	138590955	GA	G	420	PASS	KIAA1244	CCDS5189.2	r.?	-	-	Del	intronic	D	138590955	138590965	1	20	378.063	-	-	9	1	1	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	4	3	6	4	21	17	21	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435468	6	139297312	CA	C	600	PASS	REPS1	CCDS47488.1	r.?	-	-	Del	intronic	D	139297312	139297322	1	32	540.09	-	-	9	1	1	REPS1|CCDS47488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	REPS1|CCDS47488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	7	3	7	4	27	20	27	20	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435615	6	139756232	TG	T	300	PASS	-	-	-	-	-	Del	-	D	139756232	139756241	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	4	4	13	21	13	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435859	6	141040196	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	141040196	141040205	1	15	320.441	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	5	4	31	32	31	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760435923	6	141254538	CT	C	300	PASS	-	-	-	-	-	Del	-	D	141254538	141254547	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	3	11	18	11	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436243	6	142796945	CA	C	420	PASS	-	-	-	-	-	Del	-	D	142796945	142796955	1	18	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	2	7	4	34	19	34	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436371	6	143366114	AT	A	300	PASS	-	-	-	-	-	Del	-	D	143366114	143366123	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	3	3	31	18	31	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436382	6	143439661	TA	T	300	PASS	AIG1	CCDS5198.1	r.?	-	-	Del	intronic	D	143439661	143439671	1	12	269.443	-	-	9	1	1	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	2	4	27	26	27	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436549	6	143968934	CA	C	300	PASS	PHACTR2	CCDS47492.1	r.?	-	-	Del	intronic	D	143968934	143968942	1	12	270.045	-	-	7	1	1	PHACTR2|CCDS47492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR2|CCDS47492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	2	3	2	3	24	22	24	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436564	6	144015419	TAAAG	T	300	PASS	PHACTR2	CCDS47493.1	r.?	-	-	Del	intronic	D	144015419	144015431	4	6	270.045	-	-	2	1	1	PHACTR2|CCDS47493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR2|CCDS47493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	4	17	4	0	0	./.	5	0	9	1	29	23	29	23	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436661	6	144449688	TC	T	420	PASS	-	-	-	-	-	Del	-	D	144449688	144449696	1	20	378.063	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	4	4	19	21	19	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436696	6	144606770	CT	C	300	PASS	UTRN	ENST00000367529	r.?	-	-	Del	upstream	D	144606770	144606778	1	12	268.841	-	-	7	1	1	UTRN|ENST00000367529|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	UTRN|ENST00000367529|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	4	3	26	26	26	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760436740	6	144796036	CA	C	360	PASS	UTRN	CCDS34547.1	r.?	-	-	Del	intronic	D	144796036	144796046	1	16	324.054	-	-	9	1	1	UTRN|CCDS34547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UTRN|CCDS34547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	3	3	4	4	17	22	17	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437048	6	146593284	AT	A	300	PASS	GRM1	CCDS47497.1	r.?	-	-	Del	intronic	D	146593284	146593289	1	10	270.045	-	-	4	1	1	GRM1|CCDS47497.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM1|CCDS47497.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	1	4	3	4	15	25	15	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437122	6	147010692	TA	T	420	PASS	C6orf103	CCDS47498.1	r.?	-	-	Del	intronic	D	147010692	147010702	1	20	378.063	-	-	9	1	1	C6orf103|CCDS47498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf103|CCDS47498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	3	4	4	26	16	26	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437182	6	147219500	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	147219500	147219517	2	10	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	1	4	1	7	14	32	14	32	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437199	6	147327726	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	147327726	147327733	1	18	373.848	-	-	6	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	2	5	2	6	15	27	15	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437279	6	147731211	AT	A	360	PASS	AL034350.1	ENST00000507806	r.?	-	-	Del	intronic	D	147731211	147731221	1	15	324.054	-	-	9	1	1	AL034350.1|ENST00000507806|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL034350.1|ENST00000507806|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	3	4	17	20	17	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437623	6	148863137	AT	A	360	PASS	SASH1	CCDS5212.1	r.?	-	-	Del	intronic	D	148863137	148863147	1	15	323.452	-	-	9	1	1	SASH1|CCDS5212.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SASH1|CCDS5212.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	3	4	18	15	18	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437740	6	149324718	AT	A	360	PASS	UST	CCDS5213.1	r.?	-	-	Del	intronic	D	149324718	149324720	1	15	322.85	-	-	1	1	1	UST|CCDS5213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UST|CCDS5213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	2	5	2	17	16	17	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760437784	6	149498370	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	149498370	149498380	1	12	267.035	-	-	9	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	2	3	2	3	8	17	8	17	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760438420	6	151409213	T	TG	300	PASS	MTHFD1L	CCDS5228.1	r.?	-	-	Ins	intronic	I	151409213	151409221	1	12	265.228	-	-	7	1	1	MTHFD1L|CCDS5228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTHFD1L|CCDS5228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	2	20	23	20	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760438605	6	151935140	TTGTC	T	360	PASS	C6orf97	CCDS43515.1	r.?	-	-	Del	intronic	D	151935140	151935150	4	12	324.054	-	-	2	1	1	C6orf97|CCDS43515.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf97|CCDS43515.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	5	1	6	8	16	8	16	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760438685	6	152210207	A	AT	540	PASS	ESR1	CCDS5234.1	r.?	-	-	Ins	intronic	I	152210207	152210212	1	28	480.06	-	-	4	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	6	3	7	3	26	26	26	26	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760438992	6	153345972	ACTGT	A	298	PASS	RGS17	CCDS5244.1	r.?	-	-	Del	intronic	D	153345972	153345981	4	15	322.248	-	-	2	1	1	RGS17|CCDS5244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS17|CCDS5244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	2	4	3	18	16	18	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760439370	6	154408264	CA	C	300	PASS	OPRM1	CCDS47503.1	r.?	-	-	Del	intronic	D	154408264	154408273	1	12	270.045	-	-	8	1	1	OPRM1|CCDS47503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPRM1|CCDS47503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	3	2	5	2	26	18	26	18	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760439493	6	154750775	GT	G	300	PASS	CNKSR3	CCDS5246.1	r.?	-	-	Del	intronic	D	154750775	154750782	1	12	270.045	-	-	6	1	1	CNKSR3|CCDS5246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNKSR3|CCDS5246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	4	4	17	16	17	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760439545	6	154951836	AT	A	540	PASS	-	-	-	-	-	Del	-	D	154951836	154951843	1	30	484.877	-	-	6	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	4	7	6	16	26	16	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760439891	6	156150930	TA	T	420	PASS	-	-	-	-	-	Del	-	D	156150930	156150939	1	14	378.063	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	1	6	1	24	18	24	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760440045	6	156801854	GA	G	360	PASS	-	-	-	-	-	Del	-	D	156801854	156801864	1	7	324.054	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	0	6	1	17	4	17	4	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760440093	6	157020647	AT	A	420	PASS	-	-	-	-	-	Del	-	D	157020647	157020654	1	20	378.063	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	6	3	23	21	23	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760440666	6	159024179	CT	C	480	PASS	TMEM181	CCDS43520.1	r.?	-	-	Del	intronic	D	159024179	159024187	1	25	432.072	-	-	7	1	1	TMEM181|CCDS43520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM181|CCDS43520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	4	6	4	20	23	20	23	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760440818	6	159465056	GT	G	300	PASS	TAGAP	CCDS5261.1	r.366delA	c.34delA	p.T12fs*2	Del	frameshift	D	159465056	159465062	1	12	270.045	-	-	5	1	1	TAGAP|CCDS5261.1|r.366delA|c.34delA|p.T12fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TAGAP|CCDS5261.1|r.366delA|c.34delA|p.T12fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	12	5	12	0	0	./.	2	3	4	4	17	14	17	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760441067	6	160524764	CT	C	360	PASS	IGF2R	CCDS5273.1	r.?	-	-	Del	intronic	D	160524764	160524774	1	12	322.248	-	-	9	1	1	IGF2R|CCDS5273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF2R|CCDS5273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	5	1	6	3	15	22	15	22	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760441277	6	161197219	AT	A	420	PASS	-	-	-	-	-	Del	-	D	161197219	161197225	1	20	377.461	-	-	5	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	4	4	4	19	18	19	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760441502	6	162032195	TA	T	600	PASS	PARK2	CCDS5281.1	r.?	-	-	Del	intronic	D	162032195	162032202	1	35	540.09	-	-	6	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	4	6	5	8	25	28	25	28	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760442229	6	164484770	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	164484770	164484782	2	6	270.045	-	-	5	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	0	5	0	5	0	26	0	26	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760442353	6	164946809	GA	G	300	PASS	ENSG00000237744	ENST00000425920	r.?	-	-	Del	intronic	D	164946809	164946818	1	12	270.045	-	-	8	1	1	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	3	3	5	32	35	32	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760442367	6	165003154	AT	A	420	PASS	ENSG00000237744	ENST00000425920	r.?	-	-	Del	intronic	D	165003154	165003162	1	20	378.063	-	-	7	1	1	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	4	5	6	26	31	26	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760443751	6	169439266	GA	G	300	PASS	-	-	-	-	-	Del	-	D	169439266	169439275	1	12	270.045	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	6	19	6	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760443848	6	169697307	TA	T	420	PASS	-	-	-	-	-	Del	-	D	169697307	169697315	1	14	377.461	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	6	4	6	26	21	26	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760443891	6	169834660	CT	C	420	PASS	-	-	-	-	-	Del	-	D	169834660	169834670	1	20	378.063	-	-	9	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	3	4	4	6	22	34	22	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760443932	6	169974443	CT	C	480	PASS	WDR27	CCDS47520.1	r.?	-	-	Del	intronic	D	169974443	169974452	1	16	428.459	-	-	8	1	1	WDR27|CCDS47520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR27|CCDS47520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	1	7	1	7	25	31	25	31	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760443972	6	170074236	CT	C	300	PASS	WDR27	CCDS47520.1	r.?	-	-	Del	intronic	D	170074236	170074245	1	10	269.443	-	-	8	1	1	WDR27|CCDS47520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR27|CCDS47520.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	4	2	29	17	29	17	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760443987	6	170142715	CT	C	300	PASS	TCTE3	CCDS5310.1	r.?	-	-	Del	intronic	D	170142715	170142725	1	12	269.443	-	-	9	1	1	TCTE3|CCDS5310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCTE3|CCDS5310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	3	2	4	18	32	18	32	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444154	6	170701597	TTGTC	T	480	PASS	FAM120B	CCDS5314.1	r.?	-	-	Del	intronic	D	170701597	170701606	4	21	432.072	-	-	2	1	1	FAM120B|CCDS5314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM120B|CCDS5314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	2	6	3	6	21	31	21	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444208	6	170849773	A	AG	360	PASS	PSMB1	CCDS34577.1	r.?	-	-	Ins	intronic	I	170849773	170849774	1	16	313.819	-	-	0	1	1	PSMB1|CCDS34577.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PSMB1|CCDS34577.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	12	9	0	0	./.	3	3	3	4	15	34	16	34	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444238	7	93628	TC	T	300	PASS	-	-	-	-	-	Del	-	D	93628	93635	1	10	270.007	-	-	6	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	5	2	31	21	31	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444304	7	331183	C	CG	300	PASS	-	-	-	-	-	Ins	-	I	331183	331190	1	12	265.792	-	-	6	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	4	4	31	16	31	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444327	7	405533	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	405533	405542	1	21	410.938	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	6	2	7	3	32	31	32	31	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444379	7	619173	TC	T	420	PASS	PRKAR1B	CCDS34579.1	r.?	-	-	Del	intronic	D	619173	619179	1	18	377.407	-	-	5	1	1	PRKAR1B|CCDS34579.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKAR1B|CCDS34579.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	2	5	2	34	26	34	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444551	7	971612	AG	A	480	PASS	ADAP1	CCDS5318.1	r.?	-	-	Del	intronic	D	971612	971620	1	24	424.786	-	-	7	1	1	ADAP1|CCDS5318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAP1|CCDS5318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	5	3	6	7	35	22	35	22	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444617	7	1190274	AC	A	300	PASS	ZFAND2A	CCDS5323.1	r.?	-	-	Del	downstream	D	1190274	1190281	1	12	263.986	-	-	6	1	1	ZFAND2A|CCDS5323.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZFAND2A|CCDS5323.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	2	3	19	32	19	32	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760444744	7	1493811	CG	C	360	PASS	MICALL2	CCDS5324.1	r.?	-	-	Del	intronic	D	1493811	1493819	1	15	320.396	-	-	7	1	1	MICALL2|CCDS5324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MICALL2|CCDS5324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	2	4	5	4	20	16	20	16	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445047	7	2462916	TA	T	300	PASS	CHST12	CCDS5333.1	r.?	-	-	Del	intronic	D	2462916	2462925	1	12	269.405	-	-	8	1	1	CHST12|CCDS5333.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHST12|CCDS5333.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	2	3	6	3	34	11	34	11	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445108	7	2628993	CA	C	360	PASS	IQCE	CCDS43542.1	r.?	-	-	Del	intronic	D	2628993	2629003	1	16	324.008	-	-	9	1	1	IQCE|CCDS43542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCE|CCDS43542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	3	3	5	3	21	14	21	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445127	7	2670534	AT	A	420	PASS	TTYH3	CCDS34588.1	r.?	-	-	Del	upstream	D	2670534	2670543	1	14	378.009	-	-	8	1	1	TTYH3|CCDS34588.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TTYH3|CCDS34588.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	8	9	8	0	0	./.	6	1	6	1	30	8	30	8	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445247	7	2955352	AC	A	420	PASS	CARD11	CCDS5336.2	r.?	-	-	Del	intronic	D	2955352	2955357	1	20	376.203	-	-	4	1	1	CARD11|CCDS5336.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CARD11|CCDS5336.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	4	3	5	3	23	25	23	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445346	7	3175527	AG	A	480	PASS	ENSG00000217455	ENST00000402115	r.?	-	-	Del	downstream	D	3175527	3175533	1	25	432.01	-	-	5	1	1	ENSG00000217455|ENST00000402115|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000217455|ENST00000402115|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	15	12	15	0	0	./.	4	4	4	4	22	20	22	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445457	7	3392398	CT	C	360	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3392398	3392408	1	12	324.008	-	-	9	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	5	2	10	20	36	20	36	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445507	7	3552326	AT	A	300	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3552326	3552333	1	12	270.007	-	-	6	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	6	17	29	17	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445563	7	3767131	CT	C	300	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3767131	3767141	1	12	270.007	-	-	9	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	2	5	5	26	30	26	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760445575	7	3817867	GT	G	360	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3817867	3817877	1	12	324.008	-	-	9	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	1	5	1	5	20	25	20	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446028	7	5094568	AT	A	360	PASS	RBAK	CCDS5337.1	r.?	-	-	Del	intronic	D	5094568	5094577	1	12	324.008	-	-	8	1	1	RBAK|CCDS5337.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBAK|CCDS5337.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	1	5	1	17	5	17	5	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446134	7	5266749	AG	A	269	PASS	WIPI2	CCDS5339.1	r.?	-	-	Del	intronic	D	5266749	5266755	1	12	267.598	-	-	5	1	1	WIPI2|CCDS5339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WIPI2|CCDS5339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	2	3	2	5	18	23	18	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446272	7	5479201	AC	A	540	PASS	FBXL18	ENST00000399530	r.?	-	-	Del	intronic	D	5479201	5479209	1	24	476.379	-	-	7	1	1	FBXL18|ENST00000399530|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	FBXL18|ENST00000399530|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	2	7	2	8	21	19	21	19	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446428	7	5737698	G	GA	420	PASS	RNF216	CCDS34595.1	r.?	-	-	Ins	intronic	I	5737698	5737707	1	18	373.795	-	-	8	1	1	RNF216|CCDS34595.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF216|CCDS34595.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	5	2	8	21	40	21	40	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446442	7	5767338	TGA	T	360	PASS	RNF216	CCDS34595.1	r.?	-	-	Del	intronic	D	5767338	5767351	2	16	324.008	-	-	6	1	1	RNF216|CCDS34595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF216|CCDS34595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	4	4	22	24	22	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446633	7	6063011	TTC	T	360	PASS	EIF2AK1	CCDS5345.1	r.3331_3332delGA	c.?	p.?	Del	3'UTR variant	D	6063011	6063019	2	16	322.804	-	-	3	1	1	EIF2AK1|CCDS5345.1|r.3331_3332delGA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AIMP2|CCDS5344.1|r.772_773delUC|c.653_654delTC|p.L220fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	4	4	34	35	34	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446711	7	6199582	AC	A	300	PASS	USP42	CCDS47535.1	r.?	-	-	Del	intronic	D	6199582	6199590	1	12	268.802	-	-	7	1	1	USP42|CCDS47535.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	USP42|CCDS47535.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	2	18	21	18	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446725	7	6261594	CA	C	420	PASS	CYTH3	CCDS5346.1	r.?	-	-	Del	intronic	D	6261594	6261603	1	20	374.999	-	-	8	1	1	CYTH3|CCDS5346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTH3|CCDS5346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	4	4	6	15	18	15	18	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446730	7	6277351	CA	C	540	PASS	CYTH3	CCDS5346.1	r.?	-	-	Del	intronic	D	6277351	6277361	1	30	486.012	-	-	9	1	1	CYTH3|CCDS5346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTH3|CCDS5346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	4	5	4	6	26	28	26	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446758	7	6345660	AT	A	362	PASS	-	-	-	-	-	Del	-	D	6345660	6345668	1	20	378.009	-	-	7	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	4	6	8	19	28	19	28	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446854	7	6517786	GC	G	300	PASS	KDELR2	CCDS5351.1	r.?	-	-	Del	intronic	D	6517786	6517793	1	12	269.405	-	-	6	1	1	KDELR2|CCDS5351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDELR2|CCDS5351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	4	3	33	13	33	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760446949	7	6707581	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	6707581	6707590	1	15	320.396	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	2	4	2	22	18	22	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447083	7	7068968	CT	C	300	PASS	-	-	-	-	-	Del	-	D	7068968	7068976	1	10	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	4	2	4	7	26	7	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447182	7	7310238	AT	A	420	PASS	-	-	-	-	-	Del	-	D	7310238	7310247	1	20	374.999	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	4	6	5	35	27	35	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447267	7	7557942	C	CA	449	PASS	COL28A1	CCDS43553.1	r.?	-	-	Ins	intronic	I	7557942	7557951	1	24	426.592	-	-	8	1	1	COL28A1|CCDS43553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL28A1|CCDS43553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	3	5	5	5	22	27	22	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447324	7	7706926	GA	G	300	PASS	RPA3	CCDS5356.1	r.?	-	-	Del	intronic	D	7706926	7706934	1	12	270.007	-	-	7	1	1	RPA3|CCDS5356.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RPA3|CCDS5356.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	6	3	23	15	23	15	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447420	7	7988019	TG	T	360	PASS	-	-	-	-	-	Del	-	D	7988019	7988027	1	12	322.202	-	-	7	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	8	2	28	26	28	26	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447603	7	8748776	GT	G	269	PASS	NXPH1	CCDS47540.1	r.?	-	-	Del	intronic	D	8748776	8748781	1	12	270.007	-	-	4	1	1	NXPH1|CCDS47540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NXPH1|CCDS47540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	4	2	16	12	17	12	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760447884	7	9731560	CA	C	360	PASS	-	-	-	-	-	Del	-	D	9731560	9731566	1	15	324.008	-	-	5	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	4	2	5	31	23	31	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448086	7	10466838	TG	T	329	PASS	-	-	-	-	-	Del	-	D	10466838	10466846	1	15	323.406	-	-	7	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	2	4	3	7	23	35	23	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448152	7	10659132	CT	C	420	PASS	-	-	-	-	-	Del	-	D	10659132	10659142	1	14	376.203	-	-	9	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	1	6	2	7	18	22	18	22	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448280	7	11109342	CT	C	300	PASS	PHF14	CCDS47542.1	r.?	-	-	Del	intronic	D	11109342	11109352	1	12	269.405	-	-	9	1	1	PHF14|CCDS47542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHF14|CCDS47542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	3	2	10	7	10	7	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448485	7	11884767	CT	C	300	PASS	-	-	-	-	-	Del	-	D	11884767	11884774	1	10	270.007	-	-	6	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	1	4	2	6	3	26	3	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448550	7	12347404	CT	C	300	PASS	-	-	-	-	-	Del	-	D	12347404	12347414	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	4	2	25	29	25	29	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448580	7	12501415	AT	A	540	PASS	-	-	-	-	-	Del	-	D	12501415	12501421	1	28	486.012	-	-	5	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	6	5	6	33	33	33	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448709	7	12798378	AT	A	300	PASS	-	-	-	-	-	Del	-	D	12798378	12798386	1	12	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	3	3	20	26	20	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448737	7	12903196	CCTT	C	329	PASS	-	-	-	-	-	Del	-	D	12903196	12903202	3	15	324.008	-	-	1	1	-	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	4	2	5	2	27	23	27	23	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760448765	7	13002682	GA	G	300	PASS	-	-	-	-	-	Del	-	D	13002682	13002692	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	3	2	17	11	17	11	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449006	7	13785199	C	CTG	600	PASS	-	-	-	-	-	Ins	-	I	13785199	13785211	2	36	527.972	-	-	5	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	5	5	6	5	28	24	28	25	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449084	7	14094327	AT	A	300	PASS	-	-	-	-	-	Del	-	D	14094327	14094337	1	6	269.405	-	-	9	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	0	5	0	6	7	23	7	23	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449189	7	14472040	CT	C	420	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14472040	14472045	1	14	378.009	-	-	4	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	6	1	6	2	16	23	16	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449197	7	14515589	CAT	C	300	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14515589	14515593	2	10	270.007	-	-	1	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	1	4	1	4	1	14	1	14	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449599	7	15948828	CA	C	449	PASS	-	-	-	-	-	Del	-	D	15948828	15948838	1	21	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	2	6	9	10	27	22	27	22	9	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449652	7	16099139	CAA	C	540	PASS	-	-	-	-	-	Del	-	D	16099139	16099143	2	24	486.012	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	7	2	8	4	24	17	24	17	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449798	7	16690025	CA	C	300	PASS	ANKMY2	CCDS5361.1	r.?	-	-	Del	upstream	D	16690025	16690035	1	12	270.007	-	-	9	1	1	ANKMY2|CCDS5361.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BZW2|CCDS5362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	2	3	3	6	17	13	17	13	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449858	7	16865042	TC	T	300	PASS	AGR2	ENST00000412973	r.?	-	-	Del	intronic	D	16865042	16865047	1	12	270.007	-	-	4	1	1	AGR2|ENST00000412973|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AGR2|ENST00000412973|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	2	3	23	18	23	18	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760449978	7	17246559	AC	A	360	PASS	-	-	-	-	-	Del	-	D	17246559	17246563	1	16	322.804	-	-	3	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	3	5	4	22	22	22	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760450021	7	17466233	C	CG	360	PASS	-	-	-	-	-	Ins	-	I	17466233	17466241	1	15	319.191	-	-	7	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	2	7	5	30	41	30	42	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760450241	7	18193775	GT	G	360	PASS	HDAC9	ENST00000433709	r.?	-	-	Del	intronic	D	18193775	18193785	1	16	324.008	-	-	9	1	1	HDAC9|ENST00000433709|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HDAC9|ENST00000433709|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	3	5	5	22	21	22	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760450576	7	19641142	CT	C	300	PASS	-	-	-	-	-	Del	-	D	19641142	19641152	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	1	4	1	4	23	20	23	20	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760450937	7	20839751	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	20839751	20839754	1	7	320.396	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	12	9	0	0	./.	0	6	2	7	19	20	19	20	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760450960	7	20918846	GT	G	300	PASS	-	-	-	-	-	Del	-	D	20918846	20918856	1	12	266.996	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	3	4	20	22	20	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760450983	7	21004444	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	21004444	21004449	1	10	266.996	-	-	4	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	1	16	5	16	5	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451088	7	21330490	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	21330490	21330499	1	12	266.996	-	-	8	1	1	-	-	./.	0	0	0	0	15	6	16	6	0	0	./.	3	2	3	3	20	18	20	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451205	7	21685701	C	CA	300	PASS	DNAH11	ENST00000424253	r.?	-	-	Ins	intronic	I	21685701	21685709	1	6	266.996	-	-	7	1	1	DNAH11|ENST00000424253|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH11|ENST00000424253|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	5	0	7	0	32	7	32	7	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451311	7	21944617	AT	A	300	PASS	CDCA7L	CCDS5374.1	r.?	-	-	Del	intronic	D	21944617	21944627	1	12	270.007	-	-	9	1	1	CDCA7L|CCDS5374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDCA7L|CCDS5374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	2	4	17	26	17	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451537	7	22742481	TA	T	480	PASS	-	-	-	-	-	Del	-	D	22742481	22742491	1	24	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	3	5	5	26	26	26	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451631	7	23022397	CA	C	360	PASS	FAM126A	CCDS5377.1	r.?	-	-	Del	intronic	D	23022397	23022405	1	15	324.008	-	-	7	1	1	FAM126A|CCDS5377.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM126A|CCDS5377.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	4	3	6	31	33	31	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451747	7	23330346	TC	T	360	PASS	AC006039.1	ENST00000504702	r.?	-	-	Del	intronic	D	23330346	23330348	1	12	324.008	-	-	1	1	1	AC006039.1|ENST00000504702|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC006039.1|ENST00000504702|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	1	7	1	34	25	34	25	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451832	7	23567828	G	GT	300	PASS	TRA2A	CCDS5383.1	r.?	-	-	Ins	intronic	I	23567828	23567838	1	10	264.588	-	-	9	1	1	TRA2A|CCDS5383.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRA2A|CCDS5383.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	5	1	27	9	28	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760451893	7	23717197	CT	C	509	PASS	C7orf46	CCDS5385.1	r.?	-	-	Del	upstream	D	23717197	23717206	1	30	475.175	-	-	8	1	1	C7orf46|CCDS5385.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C7orf46|CCDS5385.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	15	12	15	0	0	./.	4	5	4	6	24	28	24	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452238	7	24546295	TG	T	300	PASS	-	-	-	-	-	Del	-	D	24546295	24546303	1	10	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	1	4	2	4	27	29	27	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452547	7	25580995	TA	T	360	PASS	-	-	-	-	-	Del	-	D	25580995	25581005	1	12	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	1	5	2	6	25	28	25	28	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452562	7	25631570	GA	G	360	PASS	-	-	-	-	-	Del	-	D	25631570	25631580	1	15	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	6	2	32	15	32	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452657	7	26017020	GA	G	480	PASS	-	-	-	-	-	Del	-	D	26017020	26017030	1	24	431.408	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	5	6	5	24	29	24	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452685	7	26171583	GA	G	360	PASS	-	-	-	-	-	Del	-	D	26171583	26171593	1	15	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	3	4	36	31	36	31	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452750	7	26347242	A	AT	300	PASS	SNX10	CCDS5399.1	r.?	-	-	Ins	intronic	I	26347242	26347252	1	12	265.792	-	-	9	1	1	SNX10|CCDS5399.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SNX10|CCDS5399.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	3	2	4	4	25	38	26	38	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452754	7	26352403	CA	C	480	PASS	SNX10	CCDS5399.1	r.?	-	-	Del	intronic	D	26352403	26352412	1	24	432.01	-	-	8	1	1	SNX10|CCDS5399.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SNX10|CCDS5399.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	5	3	7	5	30	29	30	29	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760452997	7	27142247	GT	G	360	PASS	HOXA2	CCDS5403.1	r.58delA	c.?	p.?	Del	5'UTR variant	D	27142247	27142256	1	16	324.008	-	-	8	1	1	HOXA2|CCDS5403.1|r.58delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	HOXA2|CCDS5403.1|r.58delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	6	4	30	31	30	31	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453060	7	27318673	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	27318673	27318681	1	20	373.795	-	-	7	1	1	-	-	./.	0	0	0	0	4	11	5	11	0	0	./.	3	4	4	7	25	37	25	37	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453100	7	27439160	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	27439160	27439167	1	18	373.795	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	5	4	6	34	25	34	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453342	7	28206639	C	CA	540	PASS	JAZF1	CCDS5416.1	r.?	-	-	Ins	intronic	I	28206639	28206648	1	24	478.185	-	-	8	1	1	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	2	7	4	29	22	29	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453354	7	28247396	TA	T	360	PASS	-	-	-	-	-	Del	-	D	28247396	28247402	1	7	324.008	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	6	0	10	0	37	14	37	14	10	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453432	7	28500660	CA	C	300	PASS	CREB5	CCDS5417.1	r.?	-	-	Del	intronic	D	28500660	28500670	1	12	268.802	-	-	9	1	1	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	5	6	27	24	27	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453494	7	28665061	CA	C	360	PASS	CREB5	CCDS5417.1	r.?	-	-	Del	intronic	D	28665061	28665070	1	12	322.804	-	-	8	1	1	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	6	1	25	23	25	23	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760453532	7	28753948	CT	C	420	PASS	CREB5	CCDS5417.1	r.?	-	-	Del	intronic	D	28753948	28753958	1	20	378.009	-	-	9	1	1	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	4	3	4	34	16	34	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760454021	7	30086844	TGAA	T	300	PASS	PLEKHA8	CCDS5424.1	r.?	-	-	Del	intronic	D	30086844	30086852	3	10	268.2	-	-	2	1	1	PLEKHA8|CCDS5424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHA8|CCDS5424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	3	5	13	25	13	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760454329	7	31382721	CA	C	300	PASS	NEUROD6	CCDS5434.1	r.?	-	-	Del	upstream	D	31382721	31382730	1	12	270.007	-	-	8	1	1	NEUROD6|CCDS5434.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NEUROD6|CCDS5434.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	15	16	15	0	0	./.	2	3	2	4	28	25	28	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760454345	7	31451956	TG	T	300	PASS	-	-	-	-	-	Del	-	D	31451956	31451965	1	12	270.007	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	6	3	26	16	26	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760454392	7	31589732	CT	C	480	PASS	CCDC129	CCDS5435.2	r.?	-	-	Del	intronic	D	31589732	31589742	1	21	431.408	-	-	9	1	1	CCDC129|CCDS5435.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC129|CCDS5435.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	2	6	2	5	19	33	19	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760454600	7	32260263	T	TA	480	PASS	PDE1C	ENST00000396193	r.?	-	-	Ins	intronic	I	32260263	32260271	1	24	419.367	-	-	7	1	1	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	5	4	7	16	25	16	26	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760454746	7	32582582	CT	C	420	PASS	AVL9	CCDS34613.1	r.?	-	-	Del	intronic	D	32582582	32582590	1	20	378.009	-	-	7	1	1	AVL9|CCDS34613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AVL9|CCDS34613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	5	8	21	31	21	31	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455011	7	33096432	G	GT	300	PASS	NT5C3	CCDS34617.1	r.?	-	-	Ins	intronic	I	33096432	33096441	1	10	264.588	-	-	8	1	1	NT5C3|CCDS34617.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NT5C3|CCDS34617.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	3	11	3	0	0	./.	4	1	6	1	23	10	23	10	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455066	7	33238291	CT	C	360	PASS	BBS9	CCDS43566.1	r.?	-	-	Del	intronic	D	33238291	33238299	1	15	324.008	-	-	7	1	1	BBS9|CCDS43566.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BBS9|CCDS43566.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	4	2	14	27	14	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455353	7	34279223	CA	C	300	PASS	-	-	-	-	-	Del	-	D	34279223	34279231	1	6	268.802	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	6	0	26	26	26	26	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455419	7	34707586	AC	A	480	PASS	NPSR1	CCDS5444.1	r.?	-	-	Del	intronic	D	34707586	34707593	1	24	432.01	-	-	6	1	1	NPSR1|CCDS5444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPSR1|CCDS5444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	5	4	5	19	33	19	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455573	7	35352491	CA	C	329	PASS	-	-	-	-	-	Del	-	D	35352491	35352501	1	15	319.191	-	-	9	1	-	-	-	./.	0	0	0	0	4	14	4	14	0	0	./.	4	2	4	5	34	21	34	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455607	7	35427599	CT	C	360	PASS	-	-	-	-	-	Del	-	D	35427599	35427608	1	15	316.181	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	2	6	6	35	34	35	34	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455686	7	35708745	CA	C	300	PASS	HERPUD2	CCDS5446.1	r.?	-	-	Del	intronic	D	35708745	35708755	1	12	269.405	-	-	9	1	1	HERPUD2|CCDS5446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HERPUD2|CCDS5446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	6	2	16	16	16	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455873	7	36280725	TC	T	300	PASS	EEPD1	CCDS34619.1	r.?	-	-	Del	intronic	D	36280725	36280732	1	10	270.007	-	-	6	1	1	EEPD1|CCDS34619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEPD1|CCDS34619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	1	4	3	5	20	25	20	25	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455915	7	36395353	TACAA	T	298	PASS	KIAA0895	CCDS47573.1	r.?	-	-	Del	intronic	D	36395353	36395361	4	16	324.008	-	-	1	1	1	KIAA0895|CCDS47573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0895|ENST00000415803|r.2313_2316delUUGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	5	14	5	14	0	0	./.	3	3	4	3	27	16	27	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455920	7	36411362	G	GT	420	PASS	KIAA0895	CCDS47573.1	r.?	-	-	Ins	upstream	I	36411362	36411371	1	20	373.795	-	-	8	1	1	KIAA0895|CCDS47573.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	KIAA0895|CCDS43570.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	23	6	23	0	0	./.	3	4	4	4	23	23	23	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455946	7	36473446	CT	C	300	PASS	ANLN	CCDS5447.1	r.?	-	-	Del	intronic	D	36473446	36473455	1	10	270.007	-	-	8	1	1	ANLN|CCDS5447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANLN|CCDS5447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	1	4	1	5	16	25	16	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760455973	7	36544739	CT	C	480	PASS	-	-	-	-	-	Del	-	D	36544739	36544748	1	25	431.408	-	-	8	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	4	4	5	4	27	20	27	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456030	7	36634430	GA	G	329	PASS	AOAH	CCDS5448.1	r.?	-	-	Del	intronic	D	36634430	36634438	1	15	324.008	-	-	7	1	1	AOAH|CCDS5448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AOAH|CCDS5448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	4	2	6	5	35	31	35	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456273	7	37370790	TG	T	300	PASS	ELMO1	CCDS5449.1	r.?	-	-	Del	intronic	D	37370790	37370793	1	12	269.405	-	-	2	1	1	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	4	5	14	27	14	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456442	7	37952879	AT	A	480	PASS	SFRP4	CCDS5453.1	r.?	-	-	Del	intronic	D	37952879	37952888	1	25	432.01	-	-	8	1	1	SFRP4|CCDS5453.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRP4|CCDS5453.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	4	4	5	8	20	24	20	24	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456664	7	38699984	AT	A	389	PASS	-	-	-	-	-	Del	-	D	38699984	38699993	1	20	371.989	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	4	4	5	21	37	21	37	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456718	7	38936207	ATTC	A	267	PASS	VPS41	CCDS5457.1	r.?	-	-	Del	intronic	D	38936207	38936217	3	12	324.008	-	-	3	1	1	VPS41|CCDS5457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS41|CCDS5457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	1	5	1	5	23	29	23	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456773	7	39077826	AT	A	420	PASS	POU6F2	CCDS34620.2	r.?	-	-	Del	intronic	D	39077826	39077835	1	18	378.009	-	-	8	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	5	2	9	16	37	16	37	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456852	7	39339424	GAA	G	420	PASS	POU6F2	CCDS34620.2	r.?	-	-	Del	intronic	D	39339424	39339430	2	20	376.203	-	-	5	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	19	7	19	0	0	./.	3	4	4	4	21	15	21	15	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456886	7	39435315	CT	C	420	PASS	POU6F2	CCDS34620.2	r.?	-	-	Del	intronic	D	39435315	39435322	1	20	378.009	-	-	6	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	3	4	24	23	24	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760456944	7	39605461	GA	G	360	PASS	C7orf36	CCDS5459.1	r.?	-	-	Del	upstream	D	39605461	39605468	1	16	324.008	-	-	6	1	1	C7orf36|CCDS5459.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C7orf36|CCDS5459.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	5	9	5	0	0	./.	3	3	3	4	24	27	24	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457002	7	39750862	CT	C	360	PASS	RALA	CCDS5460.1	r.?	-	-	Del	downstream	D	39750862	39750872	1	15	319.793	-	-	9	1	1	RALA|CCDS5460.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RALA|CCDS5460.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	3	6	22	28	22	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457043	7	39844263	GA	G	276	PASS	-	-	-	-	-	Del	-	D	39844263	39844273	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	2	4	3	19	34	19	34	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457291	7	40484785	TA	T	300	PASS	C7orf10	ENST00000309930	r.?	-	-	Del	intronic	D	40484785	40484793	1	12	270.007	-	-	7	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	2	3	2	36	16	36	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457361	7	40866638	AT	A	420	PASS	C7orf10	ENST00000309930	r.?	-	-	Del	intronic	D	40866638	40866646	1	20	378.009	-	-	7	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	4	3	5	3	23	23	23	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457424	7	41043373	CCTT	C	269	PASS	-	-	-	-	-	Del	-	D	41043373	41043380	3	12	270.007	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	2	5	3	23	24	23	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457782	7	42198742	CA	C	480	PASS	GLI3	CCDS5465.1	r.?	-	-	Del	intronic	D	42198742	42198751	1	21	430.204	-	-	8	1	1	GLI3|CCDS5465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLI3|CCDS5465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	6	2	7	3	20	42	20	42	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457837	7	42337255	AC	A	420	PASS	-	-	-	-	-	Del	-	D	42337255	42337260	1	20	378.009	-	-	4	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	3	4	4	16	20	16	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457890	7	42678892	CT	C	360	PASS	-	-	-	-	-	Del	-	D	42678892	42678901	1	15	324.008	-	-	8	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	2	4	2	5	15	15	15	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760457907	7	42738551	AT	A	360	PASS	-	-	-	-	-	Del	-	D	42738551	42738560	1	12	322.804	-	-	8	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	5	1	5	3	21	18	21	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458000	7	42979357	GA	G	360	PASS	MRPL32	CCDS5468.1	r.?	-	-	Del	downstream	D	42979357	42979365	1	16	324.008	-	-	7	1	1	MRPL32|CCDS5468.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MRPL32|CCDS5468.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	19	15	19	0	0	./.	3	3	4	3	22	24	22	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458301	7	43757292	CG	C	300	PASS	C7orf44	CCDS5471.1	r.?	-	-	Del	intronic	D	43757292	43757301	1	12	268.2	-	-	8	1	1	C7orf44|CCDS5471.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C7orf44|CCDS5471.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	2	3	24	31	24	31	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458336	7	43820779	CT	C	329	PASS	BLVRA	CCDS5472.1	r.?	-	-	Del	intronic	D	43820779	43820789	1	16	288.486	-	-	9	1	1	BLVRA|CCDS5472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BLVRA|CCDS5472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	3	3	3	23	24	23	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458396	7	43974897	TG	T	389	PASS	UBE2D4	CCDS5474.1	r.?	-	-	Del	intronic	D	43974897	43974903	1	14	378.009	-	-	5	1	1	UBE2D4|CCDS5474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2D4|CCDS5474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	1	6	2	22	16	22	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458506	7	44275179	AAG	A	420	PASS	CAMK2B	CCDS5483.1	r.?	-	-	Del	intronic	D	44275179	44275193	2	18	378.009	-	-	6	1	1	CAMK2B|CCDS5483.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK2B|CCDS5483.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	2	5	2	25	10	25	10	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458569	7	44575680	G	GC	480	PASS	NPC1L1	CCDS5491.1	r.?	-	-	Ins	intronic	I	44575680	44575686	1	16	426.592	-	-	5	1	1	NPC1L1|CCDS5491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPC1L1|CCDS5491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	7	1	9	3	27	28	27	28	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760458928	7	45497484	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	45497484	45497494	2	12	270.007	-	-	4	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	2	3	28	23	28	23	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760459260	7	46867594	CAG	C	660	PASS	-	-	-	-	-	Del	-	D	46867594	46867599	2	36	593.412	-	-	2	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	8	4	8	23	28	23	28	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760459301	7	47035651	TA	T	480	PASS	-	-	-	-	-	Del	-	D	47035651	47035661	1	9	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	8	0	10	1	25	4	25	4	10	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760459463	7	47700433	AC	A	360	PASS	C7orf65	CCDS43580.1	r.2099delC	c.?	p.?	Del	3'UTR variant	D	47700433	47700438	1	16	324.008	-	-	4	1	1	C7orf65|CCDS43580.1|r.2099delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C7orf65|CCDS43580.1|r.2099delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	4	3	26	26	26	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760459626	7	48192010	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	48192010	48192016	1	10	266.996	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	4	1	5	2	17	17	17	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760459916	7	49381194	AT	A	300	PASS	-	-	-	-	-	Del	-	D	49381194	49381203	1	10	270.007	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	1	6	3	29	11	29	11	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760459958	7	49546543	TA	T	269	PASS	-	-	-	-	-	Del	-	D	49546543	49546553	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	4	1	7	1	34	13	34	13	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460067	7	49962062	CCTT	C	418	PASS	-	-	-	-	-	Del	-	D	49962062	49962068	3	21	432.01	-	-	1	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	6	2	7	2	27	16	27	16	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460093	7	50056519	ATTT	A	300	PASS	ZPBP	CCDS5509.1	r.?	-	-	Del	intronic	D	50056519	50056526	3	6	270.007	-	-	6	1	1	ZPBP|CCDS5509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZPBP|CCDS5509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	0	5	0	5	6	18	6	18	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460120	7	50156340	TA	T	300	PASS	C7orf72	CCDS47585.1	r.?	-	-	Del	intronic	D	50156340	50156348	1	12	270.007	-	-	7	1	1	C7orf72|CCDS47585.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf72|CCDS47585.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	2	4	25	20	25	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460170	7	50432790	TA	T	300	PASS	IKZF1	ENST00000331340	r.?	-	-	Del	intronic	D	50432790	50432796	1	12	270.007	-	-	5	1	1	IKZF1|ENST00000331340|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IKZF1|ENST00000331340|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	2	6	3	24	28	24	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460219	7	50647380	GT	G	480	PASS	-	-	-	-	-	Del	-	D	50647380	50647387	1	24	428.398	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	5	4	5	25	25	25	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460231	7	50698646	AT	A	480	PASS	GRB10	CCDS43583.1	r.?	-	-	Del	intronic	D	50698646	50698655	1	21	432.01	-	-	8	1	1	GRB10|CCDS43583.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRB10|CCDS43583.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	6	3	7	19	27	19	27	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460323	7	50979736	AC	A	360	PASS	-	-	-	-	-	Del	-	D	50979736	50979738	1	15	320.998	-	-	1	1	-	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	4	2	4	3	29	16	29	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460352	7	51038361	AT	A	300	PASS	-	-	-	-	-	Del	-	D	51038361	51038371	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	3	10	12	10	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460414	7	51240496	CT	C	540	PASS	COBL	CCDS34637.1	r.?	-	-	Del	intronic	D	51240496	51240506	1	30	486.012	-	-	9	1	-	COBL|CCDS34637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COBL|CCDS34637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	4	5	5	6	29	29	29	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460446	7	51314496	CT	C	480	PASS	COBL	CCDS34637.1	r.?	-	-	Del	intronic	D	51314496	51314504	1	24	432.01	-	-	7	1	1	COBL|CCDS34637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COBL|CCDS34637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	3	5	3	6	25	29	25	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760460943	7	52663395	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	52663395	52663408	2	10	270.007	-	-	6	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	1	4	0	6	24	34	24	34	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461002	7	52851199	CT	C	420	PASS	-	-	-	-	-	Del	-	D	52851199	52851209	1	8	378.009	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	0	7	0	10	19	29	19	29	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461125	7	53164969	CT	C	360	PASS	-	-	-	-	-	Del	-	D	53164969	53164979	1	12	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	5	4	6	18	21	18	21	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461491	7	54604896	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	54604896	54604906	1	16	319.191	-	-	9	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	3	3	4	3	19	31	20	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461495	7	54621156	CT	C	480	PASS	VSTM2A	CCDS5512.2	r.?	-	-	Del	intronic	D	54621156	54621164	1	24	432.01	-	-	7	1	1	VSTM2A|CCDS5512.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VSTM2A|CCDS5512.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	5	4	7	18	29	18	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461537	7	54729265	GA	G	540	PASS	-	-	-	-	-	Del	-	D	54729265	54729271	1	30	486.012	-	-	5	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	4	5	4	29	23	29	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461639	7	55064507	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	55064507	55064515	1	10	266.996	-	-	7	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	4	1	4	2	39	9	39	9	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461688	7	55284519	T	TA	420	PASS	EGFR	ENST00000442591	r.?	-	-	Ins	intronic	I	55284519	55284527	1	18	373.795	-	-	7	1	1	EGFR|ENST00000442591|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	EGFR|ENST00000442591|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	22	14	22	0	0	./.	2	5	2	5	15	19	15	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760461695	7	55307458	GT	G	300	PASS	EGFR	ENST00000442591	r.?	-	-	Del	intronic	D	55307458	55307465	1	12	265.19	-	-	6	1	1	EGFR|ENST00000442591|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	EGFR|ENST00000442591|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	16	3	16	0	0	./.	2	3	4	5	28	28	28	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760462290	7	56533579	AT	A	300	PASS	-	-	-	-	-	Del	-	D	56533579	56533589	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	1	4	1	5	4	29	4	29	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760462383	7	56703070	CT	C	420	PASS	-	-	-	-	-	Del	-	D	56703070	56703080	1	18	378.009	-	-	9	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	2	5	2	5	24	35	24	35	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760462569	7	57157423	G	GT	285	PASS	-	-	-	-	-	Ins	-	I	57157423	57157432	1	18	373.193	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	2	5	2	32	21	32	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760462570	7	57157423	GT	G	340	PASS	-	-	-	-	-	Del	-	D	57157423	57157432	1	14	372.591	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	1	6	3	28	18	28	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760462681	7	57440924	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	57440924	57440931	1	15	320.396	-	-	6	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	3	4	26	22	26	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760462896	7	57653796	AT	A	417	PASS	-	-	-	-	-	Del	-	D	57653796	57653806	1	20	376.805	-	-	9	1	1	-	-	./.	0	0	0	0	27	18	27	18	0	0	./.	4	3	5	4	45	61	45	61	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760463073	7	57762265	TA	T	480	PASS	-	-	-	-	-	Del	-	D	57762265	57762271	1	9	432.01	-	-	5	1	1	-	-	./.	0	0	0	0	11	29	11	29	0	0	./.	0	8	0	8	1	25	1	25	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760463212	7	57943304	CT	C	300	PASS	-	-	-	-	-	Del	-	D	57943304	57943314	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	5	3	34	34	34	34	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760463793	7	62101185	CA	C	259	PASS	-	-	-	-	-	Del	-	D	62101185	62101191	1	15	324.008	-	-	5	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	3	5	29	34	29	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760463829	7	62375828	CTT	C	569	PASS	-	-	-	-	-	Del	-	D	62375828	62375831	2	36	540.013	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	5	6	5	24	41	24	41	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760463868	7	62523473	A	AG	381	PASS	-	-	-	-	-	Ins	-	I	62523473	62523476	1	15	747.589	-	-	2	1	1	-	-	./.	0	0	0	0	5	11	6	11	0	0	./.	14	0	16	0	49	28	49	28	16	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760464055	7	63136470	CT	C	452	PASS	-	-	-	-	-	Del	-	D	63136470	63136480	1	35	540.013	-	-	9	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	4	6	6	8	48	46	48	46	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760465176	7	65357155	TTTC	T	480	PASS	VKORC1L1	CCDS5529.1	r.?	-	-	Del	intronic	D	65357155	65357161	3	25	432.01	-	-	1	1	1	VKORC1L1|CCDS5529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VKORC1L1|CCDS5529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	4	4	4	4	23	18	23	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760465256	7	65509513	TG	T	300	PASS	AC008267.2	ENST00000418858	r.?	-	-	Del	intronic	D	65509513	65509522	1	12	266.394	-	-	8	1	1	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	2	3	4	3	19	29	19	29	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760465448	7	65938289	TA	T	300	PASS	AC008267.2	ENST00000418858	r.?	-	-	Del	intronic	D	65938289	65938294	1	10	270.007	-	-	4	1	1	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	4	1	4	1	27	27	27	27	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760465712	7	66477334	CA	C	478	PASS	TYW1	CCDS5538.1	r.?	-	-	Del	intronic	D	66477334	66477344	1	24	457.113	-	-	9	1	1	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	7	2	7	2	26	20	26	20	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760465784	7	66579229	AT	A	360	PASS	TYW1	CCDS5538.1	r.?	-	-	Del	intronic	D	66579229	66579238	1	12	324.008	-	-	8	1	1	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	1	5	2	15	26	15	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466039	7	66885031	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	66885031	66885040	1	20	373.795	-	-	8	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	3	4	3	4	17	15	18	15	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466364	7	67489051	CA	C	540	PASS	-	-	-	-	-	Del	-	D	67489051	67489061	1	30	483.002	-	-	9	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	4	7	6	25	26	25	26	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466424	7	67614185	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	67614185	67614195	1	20	373.795	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	4	4	30	24	30	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466516	7	67812212	CT	C	300	PASS	-	-	-	-	-	Del	-	D	67812212	67812222	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	3	7	19	37	19	37	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466549	7	67895382	GA	G	540	PASS	-	-	-	-	-	Del	-	D	67895382	67895392	1	30	486.012	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	5	5	7	16	39	16	39	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466564	7	67937110	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	67937110	67937123	2	15	324.008	-	-	6	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	3	4	29	21	29	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466612	7	68062188	AT	A	449	PASS	-	-	-	-	-	Del	-	D	68062188	68062198	1	25	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	4	6	6	18	21	18	21	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466658	7	68206483	CA	C	360	PASS	-	-	-	-	-	Del	-	D	68206483	68206492	1	15	323.406	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	4	4	6	21	35	21	35	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466674	7	68245579	GA	G	420	PASS	-	-	-	-	-	Del	-	D	68245579	68245586	1	20	378.009	-	-	6	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	3	4	5	27	39	27	39	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466877	7	68607353	TC	T	420	PASS	-	-	-	-	-	Del	-	D	68607353	68607358	1	20	378.009	-	-	4	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	3	7	3	32	30	32	30	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760466997	7	68853371	CCT	C	269	PASS	-	-	-	-	-	Del	-	D	68853371	68853388	2	10	265.792	-	-	8	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	1	6	0	31	24	31	25	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467154	7	69181230	C	CTG	360	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	69181230	69181248	2	15	315.579	-	-	8	1	-	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	4	2	4	4	23	37	24	38	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467155	7	69181291	A	AT	360	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	69181291	69181301	1	15	319.793	-	-	9	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	4	2	5	22	37	22	37	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467188	7	69254251	TA	T	660	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69254251	69254260	1	36	594.014	-	-	8	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	8	3	8	4	24	21	24	21	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467197	7	69292435	GA	G	300	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69292435	69292445	1	10	270.007	-	-	9	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	4	1	6	2	27	16	27	16	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467296	7	69679662	CT	C	360	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69679662	69679670	1	12	324.008	-	-	7	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	1	5	1	21	15	21	15	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467393	7	70025771	A	AT	360	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	70025771	70025776	1	15	320.396	-	-	4	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	2	5	3	32	18	32	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467448	7	70162119	AT	A	420	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	70162119	70162129	1	20	378.009	-	-	9	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	4	3	5	5	20	28	20	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467476	7	70211085	CA	C	420	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	70211085	70211092	1	18	377.407	-	-	6	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	5	2	6	2	22	11	22	11	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467590	7	70407641	CA	C	329	PASS	-	-	-	-	-	Del	-	D	70407641	70407646	1	15	323.406	-	-	4	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	5	4	28	18	28	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467592	7	70413379	AT	A	300	PASS	-	-	-	-	-	Del	-	D	70413379	70413389	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	5	22	5	22	0	0	./.	2	3	2	4	11	28	11	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467602	7	70427876	ATTAT	A	300	PASS	-	-	-	-	-	Del	-	D	70427876	70427887	4	12	270.007	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	3	3	9	14	9	14	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467715	7	70652723	GA	G	300	PASS	WBSCR17	CCDS5540.1	r.?	-	-	Del	intronic	D	70652723	70652731	1	12	261.578	-	-	7	1	1	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	2	3	3	3	18	24	18	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760467942	7	71176489	ACT	A	358	PASS	WBSCR17	CCDS5540.1	r.?	-	-	Del	intronic	D	71176489	71176503	2	18	376.203	-	-	6	1	1	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	5	2	4	2	31	27	31	27	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468021	7	71319321	TA	T	300	PASS	CALN1	CCDS47603.1	r.?	-	-	Del	intronic	D	71319321	71319329	1	12	270.007	-	-	7	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	4	5	28	18	28	18	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468205	7	71765032	AT	A	374	PASS	CALN1	CCDS47603.1	r.?	-	-	Del	intronic	D	71765032	71765039	1	20	378.009	-	-	6	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	4	4	5	30	25	30	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468375	7	72150236	TA	T	300	PASS	-	-	-	-	-	Del	-	D	72150236	72150246	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	4	3	25	16	25	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468618	7	72961790	CA	C	540	PASS	BCL7B	CCDS5550.1	r.?	-	-	Del	intronic	D	72961790	72961800	1	28	486.012	-	-	9	1	1	BCL7B|CCDS5550.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL7B|CCDS5550.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	3	8	12	37	12	37	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468626	7	72989787	AT	A	397	PASS	TBL2	CCDS5551.1	r.?	-	-	Del	intronic	D	72989787	72989797	1	20	377.407	-	-	9	1	1	TBL2|CCDS5551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBL2|CCDS5551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	3	5	4	34	18	34	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468803	7	73340330	GT	G	660	PASS	-	-	-	-	-	Del	-	D	73340330	73340340	1	40	592.208	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	7	5	9	19	32	19	32	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468933	7	73630112	TG	T	269	PASS	LAT2	CCDS5566.2	r.?	-	-	Del	intronic	D	73630112	73630117	1	12	265.19	-	-	4	1	1	LAT2|CCDS5566.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LAT2|CCDS5566.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	3	4	20	20	20	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760468974	7	73722155	GT	G	420	PASS	CLIP2	CCDS5569.1	r.?	-	-	Del	intronic	D	73722155	73722157	1	20	378.009	-	-	1	1	1	CLIP2|CCDS5569.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CLIP2|CCDS5569.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	3	5	3	28	26	28	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469298	7	75154170	TC	T	367	PASS	PMS2L3	ENST00000434405	r.?	-	-	Del	intronic	D	75154170	75154176	1	20	376.805	-	-	5	1	1	PMS2L3|ENST00000434405|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PMS2L3|ENST00000434405|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	3	7	4	33	34	33	34	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469322	7	75182912	CT	C	480	PASS	HIP1	CCDS34669.1	r.?	-	-	Del	intronic	D	75182912	75182922	1	24	432.01	-	-	9	1	1	HIP1|CCDS34669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HIP1|CCDS34669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	5	3	8	5	38	19	38	19	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469431	7	75402060	CA	C	300	PASS	CCL26	CCDS5578.1	r.?	-	-	Del	intronic	D	75402060	75402068	1	10	269.405	-	-	7	1	1	CCL26|CCDS5578.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCL26|CCDS5578.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	3	5	17	31	17	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469467	7	75446993	G	GT	420	PASS	CCL24	CCDS34670.1	r.?	-	-	Ins	intronic	I	75446993	75447001	1	20	373.795	-	-	7	1	1	CCL24|CCDS34670.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCL24|CCDS34670.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	7	4	35	19	35	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469482	7	75476658	CT	C	360	PASS	-	-	-	-	-	Del	-	D	75476658	75476667	1	12	322.804	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	5	2	5	18	35	18	35	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469512	7	75511968	CT	C	300	PASS	RHBDD2	CCDS43603.1	r.?	-	-	Del	intronic	D	75511968	75511978	1	12	268.2	-	-	9	1	1	RHBDD2|CCDS43603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RHBDD2|CCDS43603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	2	5	2	22	20	22	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469604	7	75725387	GA	G	300	PASS	AC006330.1	ENST00000514862	r.?	-	-	Del	intronic	D	75725387	75725396	1	12	270.007	-	-	8	1	1	AC006330.1|ENST00000514862|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC006330.1|ENST00000514862|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	6	3	39	26	39	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469636	7	75909272	TTC	T	360	PASS	SRRM3	ENST00000388802	r.?	-	-	Del	intronic	D	75909272	75909290	2	16	324.008	-	-	8	1	-	SRRM3|ENST00000388802|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRRM3|ENST00000388802|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	3	3	4	14	28	14	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760469644	7	75926110	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	75926110	75926119	1	15	320.396	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	15	10	0	0	./.	4	2	6	2	42	15	43	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470067	7	77078689	AT	A	269	PASS	-	-	-	-	-	Del	-	D	77078689	77078697	1	12	268.2	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	3	3	21	21	21	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470357	7	77704031	CT	C	360	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	77704031	77704039	1	15	322.202	-	-	7	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	4	2	4	2	20	14	20	14	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470405	7	77870116	CA	C	360	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	77870116	77870122	1	15	324.008	-	-	5	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	4	2	17	24	17	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470586	7	78278952	CT	C	360	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	78278952	78278962	1	12	324.008	-	-	9	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	5	1	7	1	29	13	29	13	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470765	7	78793769	CT	C	300	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	78793769	78793778	1	10	269.405	-	-	8	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	4	1	5	4	27	29	27	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470903	7	79230316	CT	C	360	PASS	-	-	-	-	-	Del	-	D	79230316	79230325	1	15	323.406	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	5	4	21	29	21	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760470962	7	79402664	TG	T	420	PASS	-	-	-	-	-	Del	-	D	79402664	79402669	1	20	378.009	-	-	4	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	7	3	25	26	25	26	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471029	7	79710401	AT	A	300	PASS	-	-	-	-	-	Del	-	D	79710401	79710411	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	5	3	22	10	22	10	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471039	7	79755255	GA	G	360	PASS	-	-	-	-	-	Del	-	D	79755255	79755263	1	12	324.008	-	-	7	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	5	1	7	1	24	8	24	8	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471049	7	79775788	GT	G	300	PASS	GNAI1	CCDS5595.1	r.?	-	-	Del	intronic	D	79775788	79775796	1	10	270.007	-	-	7	1	1	GNAI1|CCDS5595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNAI1|CCDS5595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	4	4	29	20	29	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471235	7	80646718	GT	G	540	PASS	-	-	-	-	-	Del	-	D	80646718	80646726	1	24	486.012	-	-	7	1	-	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	7	4	9	22	35	22	35	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471268	7	80739785	TATTA	T	300	PASS	-	-	-	-	-	Del	-	D	80739785	80739793	4	10	270.007	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	4	1	4	2	20	4	20	4	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471272	7	80754210	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	80754210	80754218	1	12	266.394	-	-	7	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	3	2	4	13	25	13	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471358	7	81164752	TA	T	300	PASS	-	-	-	-	-	Del	-	D	81164752	81164760	1	10	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	1	4	1	4	27	21	27	21	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471389	7	81335401	A	AT	480	PASS	HGF	CCDS5597.1	r.?	-	-	Ins	intronic	I	81335401	81335409	1	24	427.194	-	-	7	1	1	HGF|CCDS5597.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HGF|CCDS5597.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	21	7	21	0	0	./.	5	3	7	3	23	11	23	11	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471555	7	81928445	GA	G	300	PASS	CACNA2D1	CCDS5598.1	r.?	-	-	Del	intronic	D	81928445	81928455	1	10	270.007	-	-	9	1	1	CACNA2D1|CCDS5598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D1|CCDS5598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	10	21	10	0	0	./.	4	1	4	1	18	9	18	9	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471658	7	82219159	AT	A	720	PASS	-	-	-	-	-	Del	-	D	82219159	82219169	1	48	648.016	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	7	5	8	23	29	23	29	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471712	7	82551220	TA	T	360	PASS	PCLO	CCDS47630.1	r.?	-	-	Del	intronic	D	82551220	82551228	1	15	324.008	-	-	7	1	1	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	4	2	7	4	19	22	19	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471732	7	82660726	AT	A	300	PASS	PCLO	CCDS47630.1	r.?	-	-	Del	intronic	D	82660726	82660733	1	6	270.007	-	-	6	1	1	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	0	5	1	5	12	22	12	22	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760471806	7	82868000	AT	A	420	PASS	-	-	-	-	-	Del	-	D	82868000	82868010	1	18	375.601	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	5	2	10	17	30	17	30	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472042	7	83673049	G	GT	480	PASS	SEMA3A	CCDS5599.1	r.?	-	-	Ins	intronic	I	83673049	83673056	1	24	426.592	-	-	6	1	1	SEMA3A|CCDS5599.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEMA3A|CCDS5599.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	3	5	3	41	21	41	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472053	7	83715357	AT	A	300	PASS	SEMA3A	CCDS5599.1	r.?	-	-	Del	intronic	D	83715357	83715364	1	12	270.007	-	-	6	1	1	SEMA3A|CCDS5599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA3A|CCDS5599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	2	3	3	12	11	12	11	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472161	7	84134287	GA	G	420	PASS	-	-	-	-	-	Del	-	D	84134287	84134297	1	20	376.805	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	3	5	4	16	18	16	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472211	7	84364089	GT	G	360	PASS	-	-	-	-	-	Del	-	D	84364089	84364098	1	15	324.008	-	-	8	1	1	-	-	./.	0	0	0	0	8	21	8	21	0	0	./.	2	4	2	4	14	27	14	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472229	7	84478375	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	84478375	84478380	1	16	320.396	-	-	4	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	3	3	5	3	24	14	24	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472241	7	84583631	CT	C	282	PASS	-	-	-	-	-	Del	-	D	84583631	84583639	1	20	378.009	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	3	4	4	28	28	28	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472254	7	84687718	CT	C	300	PASS	SEMA3D	CCDS34676.1	r.?	-	-	Del	intronic	D	84687718	84687728	1	10	269.405	-	-	9	1	1	SEMA3D|CCDS34676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA3D|CCDS34676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	7	1	22	3	22	3	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472526	7	85787015	AT	A	300	PASS	-	-	-	-	-	Del	-	D	85787015	85787025	1	10	269.405	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	8	1	38	3	38	3	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472531	7	85794049	GT	G	420	PASS	-	-	-	-	-	Del	-	D	85794049	85794058	1	14	378.009	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	6	1	6	1	29	4	29	4	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472687	7	86352066	TA	T	300	PASS	GRM3	CCDS5600.1	r.?	-	-	Del	intronic	D	86352066	86352075	1	6	269.405	-	-	8	1	1	GRM3|CCDS5600.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GRM3|CCDS5600.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	0	5	0	5	4	18	4	18	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472846	7	87216733	C	CT	467	PASS	ABCB1	CCDS5608.1	r.?	-	-	Ins	intronic	I	87216733	87216736	1	16	427.194	-	-	2	1	1	ABCB1|CCDS5608.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCB1|CCDS5608.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	7	1	7	2	27	16	27	16	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472895	7	87551434	CA	C	360	PASS	-	-	-	-	-	Del	-	D	87551434	87551444	1	16	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	3	4	5	30	21	30	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760472951	7	87749220	A	AT	336	PASS	ADAM22	CCDS43609.1	r.?	-	-	Ins	intronic	I	87749220	87749225	1	15	320.396	-	-	4	1	1	ADAM22|CCDS43609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM22|CCDS43609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	2	4	3	38	3	38	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473125	7	88418017	TA	T	300	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Del	intronic	D	88418017	88418021	1	10	270.007	-	-	3	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	1	4	1	4	6	20	6	20	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473161	7	88501282	CA	C	360	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Del	intronic	D	88501282	88501292	1	7	324.008	-	-	9	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	20	6	20	0	0	./.	6	0	7	1	33	15	33	15	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473207	7	88688182	AT	A	420	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Del	intronic	D	88688182	88688191	1	20	378.009	-	-	8	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	4	3	4	24	22	24	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473292	7	88896183	GTC	G	360	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Del	intronic	D	88896183	88896187	2	15	319.793	-	-	1	1	-	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	2	9	2	35	7	35	7	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473506	7	89680273	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	89680273	89680283	1	18	369.58	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	5	2	7	27	45	27	45	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473587	7	89950300	T	TC	449	PASS	-	-	-	-	-	Ins	-	I	89950300	89950304	1	24	424.184	-	-	3	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	5	4	5	31	32	33	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473685	7	90252931	GT	G	300	PASS	CDK14	ENST00000380050	r.?	-	-	Del	intronic	D	90252931	90252940	1	10	270.007	-	-	8	1	1	CDK14|ENST00000380050|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDK14|ENST00000380050|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	6	1	17	6	17	6	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473762	7	90516457	A	AT	300	PASS	CDK14	CCDS5619.1	r.?	-	-	Ins	intronic	I	90516457	90516464	1	12	266.996	-	-	6	1	1	CDK14|CCDS5619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDK14|CCDS5619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	2	3	2	4	9	34	9	34	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473929	7	91165380	GA	G	480	PASS	-	-	-	-	-	Del	-	D	91165380	91165390	1	25	431.408	-	-	9	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	4	4	4	6	20	23	20	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473943	7	91195298	ACTT	A	449	PASS	-	-	-	-	-	Del	-	D	91195298	91195307	3	24	429.602	-	-	2	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	3	5	4	17	24	17	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760473944	7	91196212	GT	G	360	PASS	-	-	-	-	-	Del	-	D	91196212	91196222	1	15	323.406	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	2	5	3	18	20	18	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474080	7	91808711	TG	T	360	PASS	ENSG00000240720	ENST00000343318	r.134delC	c.?	p.?	Del	5'UTR variant	D	91808711	91808719	1	15	320.396	-	-	7	1	1	ENSG00000240720|ENST00000343318|r.134delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	ENSG00000240720|ENST00000343318|r.134delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	15	5	15	5	0	0	./.	2	4	4	5	18	35	18	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474207	7	92382105	G	GT	360	PASS	CDK6	CCDS5628.1	r.?	-	-	Ins	intronic	I	92382105	92382114	1	15	320.396	-	-	8	1	1	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	4	4	6	17	25	17	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474252	7	92619170	CA	C	480	PASS	-	-	-	-	-	Del	-	D	92619170	92619180	1	24	427.194	-	-	9	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	5	5	6	23	27	23	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474323	7	92859170	G	GT	300	PASS	CCDC132	CCDS43617.1	r.?	-	-	Ins	upstream	I	92859170	92859178	1	12	266.996	-	-	7	1	1	CCDC132|CCDS43617.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CCDC132|CCDS43617.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	14	19	14	0	0	./.	3	2	4	3	20	20	20	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474334	7	92938346	A	AT	540	PASS	CCDC132	CCDS43617.1	r.?	-	-	Ins	intronic	I	92938346	92938355	1	24	480.593	-	-	8	1	1	CCDC132|CCDS43617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC132|CCDS43617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	2	7	2	8	21	31	21	31	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474338	7	92979999	GA	G	300	PASS	CCDC132	CCDS43617.1	r.?	-	-	Del	intronic	D	92979999	92980009	1	10	270.007	-	-	9	1	1	CCDC132|CCDS43617.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC132|CCDS43617.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	4	1	5	2	21	27	21	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474382	7	93173891	G	GT	300	PASS	CALCR	CCDS5631.1	r.?	-	-	Ins	intronic	I	93173891	93173900	1	12	266.996	-	-	8	1	1	CALCR|CCDS5631.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CALCR|CCDS5631.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	16	20	0	0	./.	2	3	3	3	27	6	27	6	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474482	7	93532468	TC	T	420	PASS	GNGT1	CCDS5633.1	r.?	-	-	Del	upstream	D	93532468	93532474	1	14	378.009	-	-	5	1	1	GNGT1|CCDS5633.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	6	1	10	1	41	15	41	15	10	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474587	7	94185016	AT	A	300	PASS	CASD1	CCDS5636.1	r.2628delU	c.2341delT	p.C783fs*21	Del	frameshift	D	94185016	94185024	1	12	270.007	-	-	7	1	1	CASD1|CCDS5636.1|r.2628delU|c.2341delT|p.C783fs*21|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CASD1|CCDS5636.1|r.2628delU|c.2341delT|p.C783fs*21|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	2	3	20	18	20	18	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474589	7	94192177	TCTC	T	478	PASS	-	-	-	-	-	Del	-	D	94192177	94192183	3	28	486.012	-	-	1	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	3	6	3	7	25	36	25	36	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474605	7	94262935	CA	C	540	PASS	SGCE	CCDS47642.1	r.?	-	-	Del	intronic	D	94262935	94262945	1	28	484.808	-	-	9	1	1	SGCE|CCDS47642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCE|CCDS47642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	6	3	6	19	18	19	18	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474642	7	94408377	CA	C	300	PASS	-	-	-	-	-	Del	-	D	94408377	94408387	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	20	8	20	8	0	0	./.	4	1	5	1	18	14	18	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474720	7	94677811	AT	A	300	PASS	PPP1R9A	CCDS34683.1	r.?	-	-	Del	intronic	D	94677811	94677821	1	12	270.007	-	-	9	1	1	PPP1R9A|CCDS34683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R9A|CCDS34683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	2	3	2	16	15	16	15	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474740	7	94741714	CA	C	780	PASS	PPP1R9A	CCDS34683.1	r.?	-	-	Del	intronic	D	94741714	94741720	1	56	701.415	-	-	5	1	1	PPP1R9A|CCDS34683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R9A|CCDS34683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	7	6	9	7	23	31	23	31	9	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474777	7	94928081	CA	C	420	PASS	PON1	CCDS5638.1	r.1474delU	c.?	p.?	Del	3'UTR variant	D	94928081	94928090	1	20	376.203	-	-	8	1	1	PON1|CCDS5638.1|r.1474delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PON1|CCDS5638.1|r.1474delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	18	9	18	0	0	./.	4	3	5	7	32	20	32	20	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474852	7	95211475	TA	T	300	PASS	PDK4	CCDS5643.1	r.?	-	-	Del	downstream	D	95211475	95211482	1	12	269.405	-	-	6	1	1	PDK4|CCDS5643.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PDK4|CCDS5643.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	5	7	5	0	0	./.	2	3	4	8	26	23	26	23	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760474872	7	95277043	CT	C	300	PASS	-	-	-	-	-	Del	-	D	95277043	95277050	1	12	270.007	-	-	6	1	1	-	-	./.	0	0	0	0	13	27	13	27	0	0	./.	2	3	3	5	11	32	11	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475121	7	96166846	AT	A	300	PASS	-	-	-	-	-	Del	-	D	96166846	96166856	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	4	3	11	12	11	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475180	7	96396546	CT	C	300	PASS	-	-	-	-	-	Del	-	D	96396546	96396554	1	10	268.802	-	-	7	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	4	1	5	3	27	23	27	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475189	7	96427651	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	96427651	96427657	1	40	586.79	-	-	5	1	1	-	-	./.	0	0	0	0	11	14	12	14	0	0	./.	7	4	7	4	39	30	41	32	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475197	7	96469688	ACT	A	540	PASS	-	-	-	-	-	Del	-	D	96469688	96469693	2	28	486.012	-	-	2	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	6	3	7	6	22	27	22	27	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475276	7	96641265	CT	C	420	PASS	DLX6	CCDS47647.1	r.?	-	-	Del	downstream	D	96641265	96641272	1	14	378.009	-	-	6	1	1	DLX6|CCDS47647.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DLX6|CCDS47647.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	25	6	25	6	0	0	./.	6	1	7	2	34	24	34	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475344	7	96842334	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	96842334	96842341	1	16	320.396	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	3	5	4	27	27	28	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475392	7	97004130	CT	C	300	PASS	-	-	-	-	-	Del	-	D	97004130	97004139	1	12	270.007	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	3	2	27	16	27	16	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475542	7	97532973	TA	T	328	PASS	AC079781.1	ENST00000510081	r.?	-	-	Del	intronic	D	97532973	97532982	1	20	378.009	-	-	8	1	1	AC079781.1|ENST00000510081|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC079781.1|ENST00000510081|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	4	4	27	29	27	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475559	7	97574153	C	CA	334	PASS	AC079781.1	ENST00000510081	r.?	-	-	Ins	intronic	I	97574153	97574160	1	16	320.396	-	-	6	1	1	AC079781.1|ENST00000510081|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC079781.1|ENST00000510081|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	14	9	0	0	./.	3	3	3	4	20	31	20	32	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475643	7	97726716	CA	C	420	PASS	-	-	-	-	-	Del	-	D	97726716	97726718	1	20	378.009	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	5	6	17	21	17	21	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475828	7	98106060	GT	G	300	PASS	-	-	-	-	-	Del	-	D	98106060	98106062	1	6	269.405	-	-	1	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	5	0	7	0	25	14	25	14	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760475834	7	98117538	TG	T	300	PASS	-	-	-	-	-	Del	-	D	98117538	98117546	1	10	268.2	-	-	7	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	1	4	2	6	20	43	20	43	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476166	7	98813818	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	98813818	98813825	1	16	319.191	-	-	6	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	3	4	3	23	14	23	15	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476265	7	99065488	C	CA	360	PASS	ZNF789	CCDS34693.1	r.?	-	-	Ins	upstream	I	99065488	99065497	1	15	317.385	-	-	8	1	1	ZNF789|CCDS34693.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZNF789|CCDS34693.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	10	19	11	0	0	./.	4	2	8	4	37	33	37	33	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476349	7	99482940	TA	T	360	PASS	TRIM4	ENST00000447480	r.?	-	-	Del	intronic	D	99482940	99482949	1	15	324.008	-	-	8	1	1	TRIM4|ENST00000447480|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM4|ENST00000447480|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	4	5	7	17	36	17	36	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476401	7	99609897	GT	G	300	PASS	ZKSCAN1	CCDS34698.1	r.?	-	-	Del	upstream	D	99609897	99609906	1	12	270.007	-	-	8	1	-	ZKSCAN1|CCDS34698.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZKSCAN1|CCDS34698.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	6	4	27	30	27	30	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476535	7	99844033	TA	T	420	PASS	GATS	CCDS43621.1	r.?	-	-	Del	intronic	D	99844033	99844043	1	20	378.009	-	-	9	1	1	GATS|CCDS43621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GATS|CCDS43621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	5	6	27	29	27	29	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476699	7	100272361	TG	T	540	PASS	GNB2	CCDS5703.1	r.?	-	-	Del	intronic	D	100272361	100272368	1	24	486.012	-	-	6	1	1	GNB2|CCDS5703.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNB2|CCDS5703.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	2	7	3	7	18	30	18	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760476989	7	100925962	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	100925962	100925970	1	12	260.374	-	-	7	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	3	2	4	2	33	31	33	31	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760477231	7	101420605	CA	C	360	PASS	-	-	-	-	-	Del	-	D	101420605	101420614	1	15	324.008	-	-	8	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	2	4	5	4	23	35	23	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760477368	7	101696095	CT	C	480	PASS	CUX1	CCDS5721.1	r.?	-	-	Del	intronic	D	101696095	101696104	1	24	432.01	-	-	8	1	1	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	5	19	5	0	0	./.	5	3	5	4	21	27	21	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760477448	7	101850817	AC	A	457	PASS	CUX1	CCDS5721.1	r.?	-	-	Del	intronic	D	101850817	101850825	1	25	431.408	-	-	7	1	1	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	4	4	3	28	21	28	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760477651	7	102573737	AG	A	329	PASS	FBXL13	CCDS47678.1	r.?	-	-	Del	intronic	D	102573737	102573740	1	16	319.191	-	-	2	1	1	FBXL13|CCDS47678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC17|ENST00000455453|r.62delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	5	6	19	30	19	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760477870	7	103398440	A	AT	389	PASS	RELN	CCDS47680.1	r.?	-	-	Ins	intronic	I	103398440	103398447	1	20	372.591	-	-	6	1	1	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	3	5	3	25	14	25	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760477962	7	103631944	T	TA	300	PASS	RELN	CCDS47680.1	r.?	-	-	Ins	upstream	I	103631944	103631947	1	12	266.996	-	-	2	1	1	RELN|CCDS47680.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	RELN|CCDS47680.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	4	3	31	27	31	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478093	7	104120774	AC	A	360	PASS	LHFPL3	ENST00000424859	r.?	-	-	Del	intronic	D	104120774	104120781	1	15	324.008	-	-	6	1	1	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	2	4	2	5	25	23	25	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478165	7	104383409	CA	C	480	PASS	LHFPL3	ENST00000424859	r.?	-	-	Del	intronic	D	104383409	104383419	1	24	430.204	-	-	9	1	1	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	3	5	3	6	19	19	19	19	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478282	7	104752835	AC	A	360	PASS	MLL5	CCDS34723.1	r.5178delC	c.4633delC	p.P1546fs*59	Del	frameshift	D	104752835	104752841	1	15	324.008	-	-	5	1	1	MLL5|CCDS34723.1|r.5178delC|c.4633delC|p.P1546fs*59|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MLL5|CCDS34723.1|r.5178delC|c.4633delC|p.P1546fs*59|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	13	5	13	0	0	./.	4	2	5	5	23	20	23	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478299	7	104798868	AT	A	457	PASS	SRPK2	CCDS5735.1	r.?	-	-	Del	intronic	D	104798868	104798874	1	21	432.01	-	-	5	1	1	SRPK2|CCDS5735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRPK2|CCDS5735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	6	6	6	25	29	25	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478384	7	104972830	C	CA	300	PASS	SRPK2	CCDS34724.1	r.?	-	-	Ins	intronic	I	104972830	104972839	1	12	266.996	-	-	8	1	1	SRPK2|CCDS34724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRPK2|CCDS34724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	4	20	18	20	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478460	7	105114908	AT	A	300	PASS	PUS7	CCDS34725.1	r.?	-	-	Del	intronic	D	105114908	105114914	1	10	270.007	-	-	5	1	1	PUS7|CCDS34725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PUS7|CCDS34725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	1	5	19	18	19	18	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478534	7	105229360	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	105229360	105229368	1	10	266.996	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	14	0	0	./.	1	4	2	8	22	27	23	28	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478632	7	105468448	GA	G	300	PASS	ATXN7L1	CCDS47682.1	r.?	-	-	Del	intronic	D	105468448	105468457	1	10	270.007	-	-	8	1	1	ATXN7L1|CCDS47682.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN7L1|CCDS47682.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	1	4	2	4	25	23	25	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478699	7	105616051	GCT	G	360	PASS	CDHR3	CCDS47684.1	r.?	-	-	Del	intronic	D	105616051	105616056	2	16	322.804	-	-	2	1	1	CDHR3|CCDS47684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDHR3|CCDS47684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	3	3	24	15	24	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478712	7	105664548	GT	G	420	PASS	CDHR3	CCDS47684.1	r.?	-	-	Del	intronic	D	105664548	105664557	1	18	378.009	-	-	8	1	1	CDHR3|CCDS47684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDHR3|CCDS47684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	5	7	8	28	35	28	35	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478824	7	106053786	AT	A	300	PASS	-	-	-	-	-	Del	-	D	106053786	106053796	1	10	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	1	4	3	6	25	23	25	23	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760478876	7	106283929	TA	T	420	PASS	-	-	-	-	-	Del	-	D	106283929	106283938	1	18	378.009	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	2	5	2	8	31	32	31	32	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479020	7	106748113	GT	G	480	PASS	PRKAR2B	CCDS5740.1	r.?	-	-	Del	intronic	D	106748113	106748122	1	25	430.204	-	-	8	1	1	PRKAR2B|CCDS5740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKAR2B|CCDS5740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	4	4	7	5	23	32	23	32	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479474	7	108210948	TA	T	420	PASS	THAP5	CCDS47687.1	r.?	-	-	Del	upstream	D	108210948	108210958	1	20	378.009	-	-	9	1	1	THAP5|CCDS47687.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DNAJB9|CCDS5752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	3	6	6	32	27	32	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479801	7	109435278	CA	C	274	PASS	-	-	-	-	-	Del	-	D	109435278	109435287	1	15	322.202	-	-	8	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	2	4	2	5	24	27	24	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479843	7	109653016	TA	T	300	PASS	-	-	-	-	-	Del	-	D	109653016	109653019	1	10	268.2	-	-	2	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	1	4	1	6	21	22	21	22	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479873	7	109733650	GA	G	360	PASS	-	-	-	-	-	Del	-	D	109733650	109733660	1	15	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	2	4	3	6	17	29	17	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479913	7	109888518	CA	C	480	PASS	-	-	-	-	-	Del	-	D	109888518	109888527	1	16	432.01	-	-	8	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	1	7	1	10	24	39	24	39	1	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760479926	7	109957195	CA	C	360	PASS	-	-	-	-	-	Del	-	D	109957195	109957205	1	12	322.202	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	5	1	5	2	33	26	33	26	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480051	7	110420750	TA	T	480	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Del	intronic	D	110420750	110420760	1	16	429.602	-	-	9	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	1	7	2	8	17	27	17	27	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480307	7	111551560	TA	T	300	PASS	DOCK4	CCDS47688.1	r.?	-	-	Del	intronic	D	111551560	111551568	1	12	265.792	-	-	7	1	1	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	3	5	13	18	13	18	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480337	7	111680938	TA	T	480	PASS	DOCK4	CCDS47688.1	r.?	-	-	Del	intronic	D	111680938	111680943	1	25	432.01	-	-	4	1	1	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	4	6	4	28	25	28	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480376	7	111841725	TG	T	420	PASS	DOCK4	CCDS47688.1	r.?	-	-	Del	intronic	D	111841725	111841733	1	18	376.805	-	-	7	1	1	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	5	2	11	3	34	27	34	27	11	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480417	7	112003556	TA	T	300	PASS	-	-	-	-	-	Del	-	D	112003556	112003565	1	10	270.007	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	1	4	29	14	29	14	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480426	7	112058218	C	CA	300	PASS	IFRD1	CCDS34736.1	r.?	-	-	Ins	upstream	I	112058218	112058228	1	12	266.996	-	-	9	1	1	IFRD1|CCDS34736.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	IFRD1|CCDS34736.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	7	14	8	0	0	./.	2	3	4	4	36	32	36	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480473	7	112172363	GATCT	G	269	PASS	-	-	-	-	-	Del	-	D	112172363	112172370	4	12	270.007	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	5	10	28	10	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480605	7	112657172	CA	C	329	PASS	-	-	-	-	-	Del	-	D	112657172	112657181	1	15	323.406	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	4	2	8	23	26	23	26	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760480950	7	114107993	C	CT	360	PASS	FOXP2	CCDS43635.1	r.?	-	-	Ins	intronic	I	114107993	114108001	1	15	320.396	-	-	7	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	4	2	5	2	22	13	22	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481002	7	114334554	GT	G	300	PASS	FOXP2	CCDS43635.1	r.?	-	-	Del	downstream	D	114334554	114334562	1	10	270.007	-	-	7	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	15	9	15	0	0	./.	4	1	4	1	31	27	31	27	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481017	7	114365348	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	114365348	114365358	1	15	319.793	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	18	21	0	0	./.	2	4	3	5	22	22	22	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481034	7	114393948	GA	G	420	PASS	-	-	-	-	-	Del	-	D	114393948	114393958	1	20	378.009	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	3	6	31	30	31	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481063	7	114481571	GA	G	300	PASS	-	-	-	-	-	Del	-	D	114481571	114481577	1	10	270.007	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	7	2	25	17	25	17	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481139	7	114718437	GT	G	449	PASS	-	-	-	-	-	Del	-	D	114718437	114718447	1	25	424.786	-	-	9	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	4	3	7	34	32	35	32	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481353	7	115593231	TG	T	420	PASS	TFEC	CCDS5762.1	r.?	-	-	Del	intronic	D	115593231	115593238	1	18	378.009	-	-	6	1	1	TFEC|CCDS5762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TFEC|CCDS5762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	2	5	2	20	27	20	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481370	7	115682202	GA	G	420	PASS	TFEC	ENST00000484212	r.?	-	-	Del	intronic	D	115682202	115682207	1	20	378.009	-	-	4	1	1	TFEC|ENST00000484212|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TFEC|ENST00000484212|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	4	3	9	25	29	25	29	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481559	7	116373484	CT	C	360	PASS	MET	CCDS43636.1	r.?	-	-	Del	intronic	D	116373484	116373492	1	16	324.008	-	-	7	1	1	MET|CCDS43636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MET|CCDS43636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	5	18	30	18	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481562	7	116377636	A	AT	360	PASS	MET	CCDS43636.1	r.?	-	-	Ins	intronic	I	116377636	116377645	1	16	317.385	-	-	8	1	1	MET|CCDS43636.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MET|CCDS43636.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	5	5	32	36	32	36	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481599	7	116503428	GC	G	360	PASS	CAPZA2	CCDS5768.1	r.?	-	-	Del	intronic	D	116503428	116503438	1	15	317.385	-	-	9	1	1	CAPZA2|CCDS5768.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPZA2|CCDS5768.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	2	7	4	26	28	26	28	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481610	7	116533185	GT	G	300	PASS	CAPZA2	CCDS5768.1	r.?	-	-	Del	intronic	D	116533185	116533193	1	10	270.007	-	-	7	1	1	CAPZA2|CCDS5768.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPZA2|CCDS5768.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	1	6	2	27	17	27	17	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481619	7	116562083	TA	T	420	PASS	CAPZA2	CCDS5768.1	r.?	-	-	Del	downstream	D	116562083	116562092	1	18	378.009	-	-	8	1	1	CAPZA2|CCDS5768.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CAPZA2|CCDS5768.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	11	15	11	0	0	./.	5	2	8	2	25	20	25	20	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481655	7	116692413	AT	A	329	PASS	ST7OT3	CCDS5770.1	r.?	-	-	Del	intronic	D	116692413	116692423	1	15	322.804	-	-	9	1	1	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	4	2	5	13	24	13	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481672	7	116825442	T	TA	300	PASS	ST7OT3	CCDS5770.1	r.?	-	-	Ins	intronic	I	116825442	116825450	1	12	266.996	-	-	7	1	1	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	3	3	11	23	12	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481694	7	116970131	CT	C	300	PASS	-	-	-	-	-	Del	-	D	116970131	116970140	1	12	270.007	-	-	8	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	5	2	25	28	25	28	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481696	7	116985359	CT	C	480	PASS	-	-	-	-	-	Del	-	D	116985359	116985369	1	21	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	6	3	6	24	31	24	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760481794	7	117581775	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	117581775	117581778	1	12	266.996	-	-	2	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	3	2	4	4	23	15	23	15	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482096	7	118795963	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	118795963	118795966	1	15	320.396	-	-	2	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	2	5	2	19	8	19	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482102	7	118803255	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	118803255	118803256	1	25	427.194	-	-	0	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	4	4	4	6	21	25	21	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482183	7	119246274	GC	G	300	PASS	-	-	-	-	-	Del	-	D	119246274	119246279	1	10	270.007	-	-	4	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	4	1	22	10	22	10	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482385	7	120400657	GA	G	420	PASS	-	-	-	-	-	Del	-	D	120400657	120400663	1	20	376.805	-	-	5	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	4	3	4	32	30	32	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482387	7	120409000	GA	G	300	PASS	-	-	-	-	-	Del	-	D	120409000	120409006	1	10	270.007	-	-	5	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	1	4	1	5	26	23	26	23	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482415	7	120508040	CT	C	360	PASS	-	-	-	-	-	Del	-	D	120508040	120508049	1	7	324.008	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	0	6	0	30	5	30	5	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482865	7	122122081	TA	T	360	PASS	CADPS2	CCDS47691.1	r.?	-	-	Del	intronic	D	122122081	122122089	1	16	324.008	-	-	7	1	1	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	6	3	21	30	21	30	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482894	7	122221386	AT	A	300	PASS	CADPS2	CCDS47691.1	r.?	-	-	Del	intronic	D	122221386	122221394	1	10	270.007	-	-	7	1	1	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	5	1	16	15	16	15	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482919	7	122287022	TA	T	360	PASS	CADPS2	CCDS47691.1	r.?	-	-	Del	intronic	D	122287022	122287029	1	15	322.804	-	-	6	1	1	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	6	3	25	24	25	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760482995	7	122526439	AC	A	540	PASS	CADPS2	CCDS47691.1	r.73delG	c.?	p.?	Del	5'UTR variant	D	122526439	122526445	1	24	478.185	-	-	5	1	1	CADPS2|CCDS47691.1|r.73delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	CADPS2|CCDS47691.1|r.73delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	15	7	15	7	0	0	./.	7	2	8	2	26	33	26	33	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483002	7	122542414	AT	A	300	PASS	-	-	-	-	-	Del	-	D	122542414	122542422	1	12	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	19	9	19	9	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483062	7	122724492	GT	G	457	PASS	-	-	-	-	-	Del	-	D	122724492	122724499	1	25	432.01	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	4	4	4	22	24	22	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483258	7	123437024	CA	C	480	PASS	-	-	-	-	-	Del	-	D	123437024	123437034	1	25	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	4	6	5	30	19	30	19	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483333	7	123645637	C	CCT	300	PASS	-	-	-	-	-	Ins	-	I	123645637	123645654	2	6	263.986	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	0	7	3	33	36	33	36	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483410	7	123881089	GT	G	420	PASS	-	-	-	-	-	Del	-	D	123881089	123881097	1	20	378.009	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	3	5	3	27	35	27	35	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483469	7	124032163	AT	A	360	PASS	-	-	-	-	-	Del	-	D	124032163	124032170	1	15	324.008	-	-	6	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	4	2	4	24	14	24	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483491	7	124137260	AT	A	360	PASS	-	-	-	-	-	Del	-	D	124137260	124137270	1	15	324.008	-	-	9	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	2	4	2	5	19	19	19	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483561	7	124393048	GA	G	300	PASS	GPR37	CCDS5792.1	r.?	-	-	Del	intronic	D	124393048	124393058	1	10	270.007	-	-	9	1	1	GPR37|CCDS5792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR37|CCDS5792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	1	7	4	27	4	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483749	7	125006973	AT	A	420	PASS	-	-	-	-	-	Del	-	D	125006973	125006983	1	8	378.009	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	0	7	2	7	22	20	22	20	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483759	7	125028518	AT	A	300	PASS	-	-	-	-	-	Del	-	D	125028518	125028528	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483808	7	125141569	AT	A	420	PASS	-	-	-	-	-	Del	-	D	125141569	125141576	1	20	378.009	-	-	6	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	3	4	4	4	25	34	25	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483878	7	125323263	CA	C	300	PASS	-	-	-	-	-	Del	-	D	125323263	125323271	1	10	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	1	4	1	6	25	25	25	25	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760483943	7	125538545	TAAG	T	269	PASS	-	-	-	-	-	Del	-	D	125538545	125538555	3	10	270.007	-	-	3	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	1	4	1	4	13	23	13	23	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484017	7	125775689	TAGG	T	300	PASS	-	-	-	-	-	Del	-	D	125775689	125775695	3	12	268.802	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	2	4	2	19	10	19	10	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484044	7	126011744	AC	A	300	PASS	-	-	-	-	-	Del	-	D	126011744	126011746	1	10	270.007	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	5	4	25	20	25	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484313	7	127240818	G	GA	300	PASS	FSCN3	CCDS34746.1	r.?	-	-	Ins	intronic	I	127240818	127240827	1	10	266.996	-	-	8	1	1	FSCN3|CCDS34746.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	FSCN3|CCDS34746.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	1	7	2	30	28	30	28	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484377	7	127422572	TG	T	300	PASS	SND1	CCDS34747.1	r.?	-	-	Del	intronic	D	127422572	127422579	1	12	270.007	-	-	6	1	1	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	3	2	3	21	22	21	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484414	7	127555078	AT	A	360	PASS	SND1	CCDS34747.1	r.?	-	-	Del	intronic	D	127555078	127555088	1	15	324.008	-	-	9	1	1	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	11	21	11	0	0	./.	4	2	4	3	24	17	24	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484438	7	127650523	TC	T	540	PASS	SND1	CCDS34747.1	r.?	-	-	Del	intronic	D	127650523	127650529	1	30	486.012	-	-	5	1	1	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	4	7	4	25	23	25	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484522	7	127899811	TC	T	480	PASS	LEP	CCDS5800.1	r.?	-	-	Del	downstream	D	127899811	127899816	1	25	432.01	-	-	4	1	1	LEP|CCDS5800.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LEP|CCDS5800.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	4	4	4	4	29	28	29	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484564	7	128000154	GC	G	540	PASS	PRRT4	CCDS47698.1	r.?	-	-	Del	intronic	D	128000154	128000161	1	28	476.981	-	-	6	1	1	PRRT4|CCDS47698.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRRT4|CCDS47698.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	6	4	9	26	41	26	41	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484583	7	128043890	AG	A	300	PASS	IMPDH1	CCDS34749.1	r.?	-	-	Del	intronic	D	128043890	128043897	1	12	270.007	-	-	6	1	1	IMPDH1|CCDS34749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMPDH1|CCDS34749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	4	2	22	19	22	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760484593	7	128065805	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	128065805	128065814	1	10	266.996	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	13	13	0	0	./.	1	4	5	7	27	40	28	41	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485211	7	129372229	GT	G	354	PASS	NRF1	CCDS5813.2	r.?	-	-	Del	intronic	D	129372229	129372237	1	12	324.008	-	-	7	1	1	NRF1|CCDS5813.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRF1|CCDS5813.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	1	8	2	24	35	24	35	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485452	7	129785135	TC	T	720	PASS	-	-	-	-	-	Del	-	D	129785135	129785143	1	45	647.414	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	8	5	9	26	26	26	26	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485464	7	129799974	CCTCT	C	300	PASS	TMEM209	CCDS47712.1	r.?	-	-	Del	downstream	D	129799974	129799988	4	12	270.007	-	-	6	1	1	TMEM209|CCDS47712.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TMEM209|CCDS47712.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	4	29	18	29	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485551	7	130038411	T	TA	300	PASS	TSGA14	CCDS5821.1	r.1713_1714insu	c.?	p.?	Ins	3'UTR variant	I	130038411	130038421	1	12	266.996	-	-	9	1	1	TSGA14|CCDS5821.1|r.1713_1714insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TSGA14|CCDS5821.1|r.1713_1714insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	6	2	31	24	31	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485618	7	130340094	GT	G	300	PASS	COPG2	ENST00000330992	r.?	-	-	Del	intronic	D	130340094	130340104	1	12	269.405	-	-	9	1	1	COPG2|ENST00000330992|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COPG2|ENST00000330992|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	2	3	6	5	18	18	18	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485655	7	130419416	CA	C	300	PASS	KLF14	CCDS5825.1	r.?	-	-	Del	upstream	D	130419416	130419424	1	10	270.007	-	-	7	1	1	KLF14|CCDS5825.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KLF14|CCDS5825.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	8	12	8	0	0	./.	4	1	5	1	32	17	32	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485752	7	130709543	AT	A	269	PASS	-	-	-	-	-	Del	-	D	130709543	130709552	1	10	270.007	-	-	8	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	1	4	2	6	17	32	17	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760485903	7	131050568	GT	G	297	PASS	MKLN1	CCDS34754.1	r.?	-	-	Del	intronic	D	131050568	131050578	1	10	270.007	-	-	9	1	1	MKLN1|CCDS34754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MKLN1|CCDS34754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	4	1	4	2	17	20	17	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486040	7	131353984	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	131353984	131353994	1	12	320.396	-	-	9	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	5	1	7	3	32	27	32	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486350	7	132444131	CT	C	480	PASS	-	-	-	-	-	Del	-	D	132444131	132444139	1	24	432.01	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	3	7	3	29	24	29	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486369	7	132504177	CT	C	360	PASS	CHCHD3	CCDS5828.1	r.?	-	-	Del	intronic	D	132504177	132504185	1	16	324.008	-	-	7	1	1	CHCHD3|CCDS5828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHCHD3|CCDS5828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	3	3	4	4	21	28	21	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486480	7	132845021	GA	G	480	PASS	-	-	-	-	-	Del	-	D	132845021	132845029	1	25	432.01	-	-	7	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	4	5	5	30	29	30	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486492	7	132901916	TAA	T	600	PASS	-	-	-	-	-	Del	-	D	132901916	132901921	2	27	538.207	-	-	4	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	2	8	3	8	29	25	29	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486575	7	133177404	CT	C	420	PASS	EXOC4	CCDS5829.1	r.?	-	-	Del	intronic	D	133177404	133177413	1	14	378.009	-	-	8	1	1	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	1	6	1	7	10	27	10	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486682	7	133477776	CT	C	267	PASS	EXOC4	CCDS5829.1	r.?	-	-	Del	intronic	D	133477776	133477785	1	12	324.008	-	-	8	1	1	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	1	5	3	7	25	33	25	33	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486962	7	134353432	AT	A	420	PASS	BPGM	CCDS5833.1	r.?	-	-	Del	intronic	D	134353432	134353439	1	20	378.009	-	-	6	1	1	BPGM|CCDS5833.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BPGM|CCDS5833.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	4	3	23	22	23	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486969	7	134384940	CA	C	300	PASS	-	-	-	-	-	Del	-	D	134384940	134384950	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	3	2	4	3	26	22	26	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760486970	7	134385397	CT	C	300	PASS	-	-	-	-	-	Del	-	D	134385397	134385405	1	12	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	2	3	6	3	31	25	31	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487056	7	134597370	AT	A	420	PASS	CALD1	CCDS5836.1	r.?	-	-	Del	intronic	D	134597370	134597378	1	20	378.009	-	-	7	1	1	CALD1|CCDS5836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALD1|CCDS5836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	2	9	2	0	0	./.	4	3	8	7	25	29	25	29	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487127	7	134745367	AT	A	300	PASS	AGBL3	CCDS47718.1	r.?	-	-	Del	intronic	D	134745367	134745377	1	10	270.007	-	-	9	1	1	AGBL3|CCDS47718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL3|CCDS47718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	4	1	30	7	30	7	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487334	7	135260244	TA	T	420	PASS	NUP205	CCDS34759.1	r.?	-	-	Del	intronic	D	135260244	135260254	1	18	378.009	-	-	9	1	1	NUP205|CCDS34759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP205|CCDS34759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	2	7	23	24	23	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487358	7	135322456	TA	T	300	PASS	NUP205	CCDS34759.1	r.?	-	-	Del	intronic	D	135322456	135322466	1	10	262.782	-	-	9	1	1	NUP205|CCDS34759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP205|CCDS34759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	1	4	1	4	19	37	19	37	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487473	7	135661006	A	AC	420	PASS	LUZP6	CCDS5842.1	r.?	-	-	Ins	intronic	I	135661006	135661013	1	14	373.795	-	-	6	1	1	LUZP6|CCDS5842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LUZP6|CCDS5842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	1	6	1	6	29	28	29	30	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487477	7	135674851	CA	C	360	PASS	-	-	-	-	-	Del	-	D	135674851	135674859	1	12	324.008	-	-	7	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	1	6	1	35	11	35	11	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487649	7	136138575	AT	A	420	PASS	-	-	-	-	-	Del	-	D	136138575	136138585	1	18	378.009	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	2	6	5	29	21	29	21	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487670	7	136189318	AT	A	300	PASS	-	-	-	-	-	Del	-	D	136189318	136189326	1	6	270.007	-	-	7	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	5	0	5	0	12	4	12	4	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487810	7	136626473	CT	C	300	PASS	CHRM2	CCDS5843.1	r.?	-	-	Del	intronic	D	136626473	136626479	1	12	268.802	-	-	5	1	1	CHRM2|CCDS5843.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM2|CCDS5843.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	2	3	3	4	19	23	19	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487834	7	136701593	C	CT	420	PASS	CHRM2	CCDS5843.1	r.2509_2510insu	c.?	p.?	Ins	3'UTR variant	I	136701593	136701599	1	18	373.795	-	-	5	1	1	CHRM2|CCDS5843.1|r.2509_2510insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CHRM2|CCDS5843.1|r.2509_2510insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	9	18	9	0	0	./.	5	2	7	3	33	21	33	22	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487838	7	136727073	GA	G	300	PASS	-	-	-	-	-	Del	-	D	136727073	136727083	1	12	270.007	-	-	9	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	3	2	3	5	22	27	22	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487840	7	136732404	TG	T	540	PASS	-	-	-	-	-	Del	-	D	136732404	136732413	1	30	484.206	-	-	8	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	4	5	5	5	15	22	15	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760487911	7	136938331	GCA	G	540	PASS	PTN	CCDS5844.1	r.595_596delUG	c.167_168delTG	p.V56fs*19	Del	frameshift	D	136938331	136938343	2	30	486.012	-	-	5	1	1	PTN|CCDS5844.1|r.595_596delUG|c.167_168delTG|p.V56fs*19|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PTN|CCDS5844.1|r.595_596delUG|c.167_168delTG|p.V56fs*19|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	13	7	13	0	0	./.	5	4	7	4	29	24	29	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488103	7	137737949	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	137737949	137737953	2	6	270.007	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	0	7	0	37	7	37	7	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488187	7	137956636	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	137956636	137956643	1	12	266.394	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	2	25	7	25	8	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488502	7	138630445	CT	C	540	PASS	KIAA1549	ENST00000440172	r.?	-	-	Del	intronic	D	138630445	138630453	1	24	483.002	-	-	7	1	1	KIAA1549|ENST00000440172|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1549|ENST00000440172|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	7	2	7	4	32	22	32	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488614	7	138887422	CT	C	329	PASS	-	-	-	-	-	Del	-	D	138887422	138887432	1	12	323.406	-	-	9	1	-	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	5	1	6	2	23	17	23	17	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488625	7	138950223	CA	C	300	PASS	UBN2	CCDS43655.1	r.?	-	-	Del	intronic	D	138950223	138950233	1	12	270.007	-	-	9	1	1	UBN2|CCDS43655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBN2|CCDS43655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	2	3	3	4	26	23	26	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488667	7	139038564	CA	C	300	PASS	LUC7L2	ENST00000448820	r.?	-	-	Del	intronic	D	139038564	139038574	1	10	270.007	-	-	9	1	1	LUC7L2|ENST00000448820|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LUC7L2|ENST00000448820|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	5	3	36	24	36	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488754	7	139169581	AT	A	480	PASS	KLRG2	CCDS5854.1	r.?	-	-	Del	upstream	D	139169581	139169588	1	24	432.01	-	-	6	1	1	KLRG2|CCDS5854.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KLRG2|CCDS5854.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	13	5	13	0	0	./.	5	3	7	4	24	20	24	20	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488771	7	139255028	CG	C	360	PASS	HIPK2	ENST00000406875	r.6336delC	c.?	p.?	Del	3'UTR variant	D	139255028	139255038	1	12	324.008	-	-	9	1	1	HIPK2|ENST00000406875|r.6336delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	HIPK2|ENST00000406875|r.6336delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	10	6	10	0	0	./.	5	1	5	2	27	9	27	9	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488885	7	139729444	GA	G	420	PASS	PARP12	CCDS5857.1	r.?	-	-	Del	intronic	D	139729444	139729454	1	18	376.203	-	-	9	1	1	PARP12|CCDS5857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARP12|CCDS5857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	2	5	2	6	17	23	17	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760488896	7	139759726	TGAG	T	449	PASS	PARP12	CCDS5857.1	r.?	-	-	Del	intronic	D	139759726	139759736	3	24	432.01	-	-	3	1	1	PARP12|CCDS5857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARP12|CCDS5857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	5	3	8	26	25	26	25	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489018	7	139996989	CA	C	420	PASS	-	-	-	-	-	Del	-	D	139996989	139996999	1	20	378.009	-	-	9	1	1	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	3	4	3	6	26	24	26	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489030	7	140020948	TA	T	360	PASS	-	-	-	-	-	Del	-	D	140020948	140020958	1	16	320.998	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	3	3	17	23	17	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489134	7	140161444	TA	T	360	PASS	MKRN9P	CCDS5860.1	r.?	-	-	Del	intronic	D	140161444	140161454	1	15	324.008	-	-	9	1	1	MKRN9P|CCDS5860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MKRN9P|CCDS5860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	2	4	3	5	25	26	25	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489172	7	140206420	CT	C	540	PASS	-	-	-	-	-	Del	-	D	140206420	140206430	1	28	486.012	-	-	9	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	6	3	7	3	26	21	26	21	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489246	7	140371260	T	TA	327	PASS	ADCK2	CCDS5861.1	r.?	-	-	Ins	upstream	I	140371260	140371269	1	20	373.193	-	-	8	1	1	ADCK2|CCDS5861.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	DENND2A|ENST00000489552|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	3	4	3	4	26	30	26	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489284	7	140452475	AT	A	300	PASS	BRAF	CCDS5863.1	r.?	-	-	Del	intronic	D	140452475	140452485	1	6	265.19	-	-	9	1	1	BRAF|CCDS5863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRAF|CCDS5863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	0	5	0	8	5	26	5	26	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489406	7	140756822	CA	C	389	PASS	-	-	-	-	-	Del	-	D	140756822	140756830	1	18	358.141	-	-	7	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	5	4	6	31	23	31	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489440	7	140899380	T	TTC	357	PASS	-	-	-	-	-	Ins	-	I	140899380	140899396	2	15	315.579	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	4	3	37	26	37	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489621	7	141508699	TA	T	360	PASS	-	-	-	-	-	Del	-	D	141508699	141508708	1	15	324.008	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	2	5	3	22	26	22	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489929	7	142478379	CTT	C	600	PASS	PRSS2	ENST00000311757	r.?	-	-	Del	intronic	D	142478379	142478383	2	35	540.013	-	-	3	1	1	PRSS2|ENST00000311757|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRSS2|ENST00000311757|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	6	4	7	5	10	9	10	9	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760489981	7	142855293	GA	G	540	PASS	-	-	-	-	-	Del	-	D	142855293	142855303	1	28	485.41	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	3	6	5	7	25	25	25	25	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490085	7	143227275	C	CT	394	PASS	-	-	-	-	-	Ins	-	I	143227275	143227285	1	21	427.194	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	6	2	10	2	31	28	31	28	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490208	7	144081825	TG	T	360	PASS	ARHGEF5	CCDS34771.1	r.?	-	-	Del	downstream	D	144081825	144081831	1	15	324.008	-	-	5	1	1	ARHGEF5|CCDS34771.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ARHGEF5|CCDS34771.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	6	8	6	0	0	./.	4	2	7	2	25	23	25	23	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490380	7	144701440	CT	C	480	PASS	-	-	-	-	-	Del	-	D	144701440	144701449	1	16	430.806	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	7	1	9	10	25	10	25	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490432	7	144841478	CT	C	360	PASS	-	-	-	-	-	Del	-	D	144841478	144841488	1	15	323.406	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	4	4	5	22	24	22	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490498	7	145044335	GA	G	660	PASS	-	-	-	-	-	Del	-	D	145044335	145044343	1	42	593.412	-	-	7	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	6	6	6	24	32	24	32	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490525	7	145170654	CT	C	480	PASS	-	-	-	-	-	Del	-	D	145170654	145170664	1	24	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	5	3	8	13	22	13	22	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490639	7	145659123	CT	C	300	PASS	ENSG00000237800	ENST00000439291	r.?	-	-	Del	intronic	D	145659123	145659132	1	12	269.405	-	-	8	1	1	ENSG00000237800|ENST00000439291|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237800|ENST00000439291|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	3	4	19	13	19	13	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490864	7	146650485	TA	T	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146650485	146650494	1	12	270.007	-	-	8	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	3	5	14	21	14	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490877	7	146693104	GT	G	360	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146693104	146693114	1	12	324.008	-	-	9	1	-	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	1	5	2	7	14	22	14	22	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490918	7	146779185	GA	G	360	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146779185	146779194	1	16	324.008	-	-	8	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	3	3	6	30	25	30	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490926	7	146825562	CT	C	360	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146825562	146825571	1	12	324.008	-	-	8	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	5	1	7	1	20	2	20	2	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760490950	7	146917802	CT	C	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146917802	146917812	1	10	269.405	-	-	9	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	2	5	13	12	13	12	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491204	7	147674108	GA	G	420	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147674108	147674114	1	20	377.407	-	-	5	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	4	3	4	3	28	23	28	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491243	7	147785656	TA	T	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147785656	147785664	1	12	270.007	-	-	7	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	3	2	5	2	19	17	19	17	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491326	7	148021230	GC	G	360	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	148021230	148021237	1	16	324.008	-	-	6	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	3	3	4	3	25	19	25	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491486	7	148402334	CT	C	300	PASS	CUL1	CCDS34772.1	r.?	-	-	Del	intronic	D	148402334	148402343	1	10	270.007	-	-	8	1	1	CUL1|CCDS34772.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CUL1|CCDS34772.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	1	4	1	5	14	25	14	25	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491582	7	148659577	CT	C	360	PASS	-	-	-	-	-	Del	-	D	148659577	148659586	1	12	324.008	-	-	8	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	5	1	8	3	34	30	34	30	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491590	7	148666699	CT	C	420	PASS	-	-	-	-	-	Del	-	D	148666699	148666709	1	20	377.407	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	4	4	4	20	28	20	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491616	7	148726620	GA	G	360	PASS	PDIA4	CCDS5893.1	r.?	-	-	Del	upstream	D	148726620	148726629	1	12	322.202	-	-	8	1	1	PDIA4|CCDS5893.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PDIA4|CCDS5893.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	10	6	10	0	0	./.	5	1	5	4	24	30	24	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491834	7	149134166	TA	T	300	PASS	ZNF777	CCDS43675.1	r.?	-	-	Del	intronic	D	149134166	149134176	1	12	270.007	-	-	9	1	1	ZNF777|CCDS43675.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF777|CCDS43675.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	2	4	26	26	26	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491914	7	149370180	GA	G	322	PASS	-	-	-	-	-	Del	-	D	149370180	149370189	1	20	376.805	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	5	4	29	33	29	33	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760491974	7	149620782	TAC	T	252	PASS	-	-	-	-	-	Del	-	D	149620782	149620798	2	7	319.793	-	-	7	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	6	0	6	0	27	6	27	6	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760492310	7	150673818	AC	A	329	PASS	KCNH2	CCDS5910.1	r.?	-	-	Del	intronic	D	150673818	150673828	1	15	316.783	-	-	9	1	1	KCNH2|CCDS5910.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH2|CCDS5910.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	2	4	2	4	14	13	14	13	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760492356	7	150818428	T	TG	360	PASS	AGAP3	CCDS43681.1	r.?	-	-	Ins	intronic	I	150818428	150818437	1	15	319.793	-	-	8	1	1	AGAP3|CCDS43681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGAP3|CCDS43681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	3	5	27	32	27	32	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760492464	7	151141892	AT	A	600	PASS	CRYGN	CCDS5926.1	r.?	-	-	Del	upstream	D	151141892	151141900	1	35	540.013	-	-	7	1	1	CRYGN|CCDS5926.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CRYGN|CCDS5926.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	13	14	13	0	0	./.	6	4	7	4	18	25	18	25	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760492619	7	151635519	CA	C	480	PASS	-	-	-	-	-	Del	-	D	151635519	151635529	1	24	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	5	4	7	22	36	22	36	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760492667	7	151736349	AT	A	300	PASS	GALNT11	CCDS5930.1	r.?	-	-	Del	intronic	D	151736349	151736356	1	12	270.007	-	-	6	1	1	GALNT11|CCDS5930.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GALNT11|CCDS5930.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	4	5	28	26	28	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493012	7	152240499	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	152240499	152240508	1	10	266.996	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	11	10	0	0	./.	1	4	2	5	38	38	39	38	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493121	7	152407056	CT	C	420	PASS	-	-	-	-	-	Del	-	D	152407056	152407065	1	18	378.009	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	2	7	5	25	33	25	33	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493399	7	153228818	CA	C	537	PASS	-	-	-	-	-	Del	-	D	153228818	153228828	1	28	486.012	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	3	9	3	33	28	33	28	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493487	7	153552928	CA	C	540	PASS	-	-	-	-	-	Del	-	D	153552928	153552938	1	18	486.012	-	-	9	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	8	1	9	2	41	23	41	23	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493573	7	153810417	TC	T	389	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	153810417	153810424	1	20	378.009	-	-	6	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	4	3	5	4	14	25	14	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493592	7	153898220	G	GT	660	PASS	DPP6	ENST00000404039	r.?	-	-	Ins	intronic	I	153898220	153898230	1	40	580.167	-	-	9	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	7	4	9	5	36	28	36	28	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493626	7	153985864	TA	T	600	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	153985864	153985874	1	27	540.013	-	-	9	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	8	3	9	26	37	26	37	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493687	7	154186819	GA	G	300	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154186819	154186829	1	12	268.2	-	-	9	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	2	4	26	31	26	31	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493756	7	154515064	CA	C	360	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154515064	154515072	1	15	324.008	-	-	7	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	5	3	29	22	29	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760493952	7	155107977	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	155107977	155107982	1	12	266.394	-	-	4	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	3	2	4	4	28	16	28	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494034	7	155278012	GA	G	360	PASS	CNPY1	CCDS43684.1	r.?	-	-	Del	intronic	D	155278012	155278014	1	16	323.406	-	-	1	1	1	CNPY1|CCDS43684.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	CNPY1|CCDS43684.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	5	4	25	21	25	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494213	7	155741167	CTG	C	420	PASS	-	-	-	-	-	Del	-	D	155741167	155741172	2	20	378.009	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	3	5	3	23	24	23	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494246	7	155847452	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	155847452	155847460	1	21	427.194	-	-	7	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	6	2	6	2	23	24	24	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494276	7	155916996	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	155916996	155916999	1	25	414.551	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	10	10	0	0	./.	4	4	7	4	34	23	34	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494399	7	156262169	TA	T	480	PASS	-	-	-	-	-	Del	-	D	156262169	156262179	1	25	432.01	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	4	6	4	30	21	30	21	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494503	7	156651654	TA	T	269	PASS	LMBR1	CCDS5945.1	r.?	-	-	Del	intronic	D	156651654	156651662	1	12	270.007	-	-	7	1	1	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	3	2	4	4	19	25	19	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494623	7	156922680	AT	A	660	PASS	-	-	-	-	-	Del	-	D	156922680	156922689	1	42	593.412	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	5	7	8	31	25	31	25	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760494838	7	157515520	GT	G	300	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	157515520	157515522	1	12	266.996	-	-	1	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	2	3	5	3	17	16	17	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495068	7	158230113	GT	G	420	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	158230113	158230119	1	18	378.009	-	-	5	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	5	3	27	34	27	34	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495090	7	158297076	TC	T	600	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	158297076	158297085	1	32	540.013	-	-	8	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	7	3	7	3	30	27	30	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495209	7	158579115	GA	G	420	PASS	ESYT2	CCDS34791.1	r.?	-	-	Del	intronic	D	158579115	158579124	1	8	374.397	-	-	8	1	1	ESYT2|CCDS34791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESYT2|CCDS34791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	0	7	1	8	9	26	9	26	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495546	8	469530	C	CT	600	PASS	C8orf42	CCDS47759.1	r.?	-	-	Ins	intronic	I	469530	469536	1	36	529.941	-	-	5	1	1	C8orf42|CCDS47759.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf42|CCDS47759.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	5	8	5	0	0	./.	5	5	5	5	28	28	28	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495549	8	498098	AT	A	360	PASS	C8orf42	CCDS47759.1	r.?	-	-	Del	upstream	D	498098	498108	1	16	324.467	-	-	9	1	1	C8orf42|CCDS47759.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C8orf42|CCDS47759.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	3	5	30	22	30	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495584	8	655487	TA	T	360	PASS	ERICH1	CCDS5955.1	r.?	-	-	Del	intronic	D	655487	655497	1	15	324.467	-	-	9	1	1	ERICH1|CCDS5955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERICH1|CCDS5955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	2	8	26	34	26	34	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495633	8	880623	C	CT	300	PASS	C8orf68	ENST00000450568	r.?	-	-	Ins	intronic	I	880623	880626	1	12	267.379	-	-	2	1	1	C8orf68|ENST00000450568|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf68|ENST00000450568|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	3	3	26	24	26	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495724	8	1208438	TG	T	300	PASS	-	-	-	-	-	Del	-	D	1208438	1208446	1	12	269.787	-	-	7	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	2	3	3	5	11	23	11	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495743	8	1261625	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	1261625	1261633	1	12	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	4	5	26	28	27	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760495842	8	1688725	AT	A	300	PASS	-	-	-	-	-	Del	-	D	1688725	1688733	1	10	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	3	5	23	30	23	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496156	8	2302773	CA	C	360	PASS	-	-	-	-	-	Del	-	D	2302773	2302782	1	15	321.456	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	4	4	7	16	28	16	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496199	8	2447393	CA	C	300	PASS	AC104021.1	ENST00000515276	r.1387delU	-	-	Del	non-coding variant	D	2447393	2447402	1	12	267.981	-	-	8	1	1	AC104021.1|ENST00000515276|r.1387delU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	AC104021.1|ENST00000515276|r.1387delU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	6	2	30	19	30	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496225	8	2529562	CT	C	420	PASS	-	-	-	-	-	Del	-	D	2529562	2529572	1	18	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	2	6	2	22	22	22	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496274	8	2729482	TA	T	300	PASS	-	-	-	-	-	Del	-	D	2729482	2729484	1	10	270.389	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	1	4	3	7	18	26	18	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496284	8	2754724	AT	A	660	PASS	-	-	-	-	-	Del	-	D	2754724	2754733	1	42	593.651	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	5	6	5	34	27	34	27	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496302	8	2783268	CT	C	480	PASS	-	-	-	-	-	Del	-	D	2783268	2783278	1	25	430.816	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	4	4	4	26	19	26	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496327	8	2875854	GA	G	300	PASS	CSMD1	ENST00000318252	r.?	-	-	Del	intronic	D	2875854	2875861	1	6	270.389	-	-	6	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	5	0	6	0	35	2	35	2	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496493	8	3409851	CT	C	360	PASS	CSMD1	ENST00000318252	r.?	-	-	Del	intronic	D	3409851	3409861	1	15	323.865	-	-	9	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	2	4	2	29	27	29	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496524	8	3457648	GAC	G	480	PASS	CSMD1	ENST00000318252	r.?	-	-	Del	intronic	D	3457648	3457662	2	25	432.622	-	-	6	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	4	4	4	5	41	18	41	18	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496587	8	3605308	CA	C	358	PASS	CSMD1	ENST00000318252	r.?	-	-	Del	intronic	D	3605308	3605318	1	20	378.544	-	-	9	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	3	4	3	5	22	29	22	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496845	8	4213256	AT	A	360	PASS	-	-	-	-	-	Del	-	D	4213256	4213261	1	12	324.467	-	-	4	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	1	7	3	34	13	34	13	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496943	8	4523546	AT	A	300	PASS	-	-	-	-	-	Del	-	D	4523546	4523555	1	10	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	4	1	4	1	21	14	21	14	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496945	8	4528880	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	4528880	4528889	1	32	534.757	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	7	3	7	4	36	30	36	30	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496946	8	4533227	AT	A	300	PASS	-	-	-	-	-	Del	-	D	4533227	4533236	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	3	3	38	26	38	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760496948	8	4553113	TC	T	480	PASS	-	-	-	-	-	Del	-	D	4553113	4553121	1	24	430.214	-	-	7	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	5	5	6	23	19	23	19	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497051	8	4878300	TG	T	360	PASS	-	-	-	-	-	Del	-	D	4878300	4878307	1	16	323.865	-	-	6	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	3	3	4	4	18	38	18	38	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497084	8	4965055	AT	A	360	PASS	-	-	-	-	-	Del	-	D	4965055	4965065	1	15	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	2	5	3	24	32	24	32	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497243	8	5461164	CT	C	300	PASS	-	-	-	-	-	Del	-	D	5461164	5461174	1	10	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	5	1	25	13	25	13	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497550	8	6242342	C	CA	429	PASS	-	-	-	-	-	Ins	-	I	6242342	6242349	1	21	427.806	-	-	6	1	1	-	-	./.	0	0	0	0	13	21	14	21	0	0	./.	6	2	6	4	29	27	29	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497604	8	6325284	AT	A	300	PASS	MCPH1	CCDS43689.1	r.?	-	-	Del	intronic	D	6325284	6325293	1	12	270.389	-	-	8	1	1	MCPH1|CCDS43689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCPH1|CCDS43689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	5	4	26	30	26	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497620	8	6372333	GC	G	480	PASS	MCPH1	CCDS43689.1	r.?	-	-	Del	intronic	D	6372333	6372341	1	25	432.02	-	-	7	1	1	MCPH1|CCDS43689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCPH1|CCDS43689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	4	5	5	25	28	25	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760497723	8	6622285	CA	C	269	PASS	AGPAT5	CCDS34796.1	r.?	-	-	Del	downstream	D	6622285	6622294	1	6	270.389	-	-	8	1	1	AGPAT5|CCDS34796.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AGPAT5|CCDS34796.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	14	11	14	0	0	./.	0	5	2	6	25	34	25	34	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498167	8	8696758	GT	G	360	PASS	MFHAS1	CCDS34844.1	r.?	-	-	Del	intronic	D	8696758	8696768	1	12	324.467	-	-	9	1	1	MFHAS1|CCDS34844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MFHAS1|CCDS34844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	1	6	1	24	13	24	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498222	8	8805079	GT	G	540	PASS	-	-	-	-	-	Del	-	D	8805079	8805089	1	30	486.7	-	-	9	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	5	4	6	5	19	29	19	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498326	8	9048547	TA	T	540	PASS	-	-	-	-	-	Del	-	D	9048547	9048556	1	30	486.7	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	5	5	6	30	25	30	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498419	8	9275808	TC	T	540	PASS	-	-	-	-	-	Del	-	D	9275808	9275815	1	30	482.486	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	5	6	6	23	23	23	23	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498460	8	9361956	AT	A	528	PASS	-	-	-	-	-	Del	-	D	9361956	9361962	1	36	540.778	-	-	5	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	5	5	5	5	18	27	18	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498474	8	9385720	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	9385720	9385730	1	32	534.757	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	7	5	7	25	22	25	23	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498575	8	9672957	CT	C	540	PASS	-	-	-	-	-	Del	-	D	9672957	9672967	1	28	484.292	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	6	4	10	24	41	24	41	4	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498695	8	9900662	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	9900662	9900669	1	12	263.766	-	-	6	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	2	3	18	19	18	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498696	8	9900668	AC	A	329	PASS	-	-	-	-	-	Del	-	D	9900668	9900670	1	12	322.661	-	-	1	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	1	6	3	18	18	18	18	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498714	8	9941193	GT	G	420	PASS	MSRA	CCDS5975.1	r.?	-	-	Del	intronic	D	9941193	9941203	1	14	378.544	-	-	9	1	1	MSRA|CCDS5975.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSRA|CCDS5975.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	6	2	8	14	30	14	30	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498727	8	9967157	TC	T	540	PASS	MSRA	CCDS47799.1	r.?	-	-	Del	intronic	D	9967157	9967159	1	28	486.7	-	-	1	1	1	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	6	4	7	30	28	30	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498877	8	10435080	A	AT	326	PASS	-	-	-	-	-	Ins	-	I	10435080	10435086	1	15	320.854	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	5	3	35	25	35	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498896	8	10490024	TC	T	480	PASS	RP1L1	CCDS43708.1	r.?	-	-	Del	intronic	D	10490024	10490030	1	25	432.622	-	-	5	1	1	RP1L1|CCDS43708.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RP1L1|CCDS43708.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	6	5	37	29	37	29	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498902	8	10505795	GC	G	360	PASS	RP1L1	CCDS43708.1	r.?	-	-	Del	intronic	D	10505795	10505802	1	15	324.467	-	-	6	1	1	RP1L1|CCDS43708.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RP1L1|CCDS43708.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	6	3	28	28	28	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760498944	8	10646088	GA	G	360	PASS	SOX7	CCDS47801.1	r.?	-	-	Del	intronic	D	10646088	10646097	1	12	313.028	-	-	8	1	1	SOX7|CCDS47801.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOX7|CCDS47801.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	1	5	2	7	25	26	25	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499046	8	11045120	GA	G	540	PASS	XKR6	CCDS5978.2	r.?	-	-	Del	intronic	D	11045120	11045128	1	28	486.098	-	-	7	1	1	XKR6|CCDS5978.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR6|CCDS5978.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	6	3	8	6	36	28	36	28	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499123	8	11228476	CA	C	329	PASS	TDH	ENST00000326605	r.?	-	-	Del	downstream	D	11228476	11228482	1	16	316.64	-	-	5	1	1	TDH|ENST00000326605|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C8orf12|ENST00000284481|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	3	4	5	25	13	25	13	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499278	8	11601394	T	TA	360	PASS	GATA4	CCDS5983.1	r.?	-	-	Ins	intronic	I	11601394	11601403	1	15	320.854	-	-	8	1	1	GATA4|CCDS5983.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GATA4|CCDS5983.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	2	5	27	28	28	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499727	8	12928367	AT	A	269	PASS	-	-	-	-	-	Del	-	D	12928367	12928377	1	6	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	5	0	7	3	24	27	24	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499738	8	12942674	G	GA	300	PASS	DLC1	CCDS5989.1	r.5642_5643insu	c.?	p.?	Ins	3'UTR variant	I	12942674	12942683	1	12	250.521	-	-	8	1	1	DLC1|CCDS5989.1|r.5642_5643insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	DLC1|CCDS5989.1|r.5642_5643insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	3	4	26	28	26	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499833	8	13188188	CA	C	720	PASS	DLC1	CCDS5989.1	r.?	-	-	Del	intronic	D	13188188	13188195	1	48	648.933	-	-	6	1	1	DLC1|CCDS5989.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLC1|CCDS5989.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	7	5	7	5	23	25	23	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760499988	8	13519176	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	13519176	13519184	1	28	481.282	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	6	5	7	32	29	33	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500034	8	13601834	AT	A	480	PASS	-	-	-	-	-	Del	-	D	13601834	13601844	1	16	432.622	-	-	9	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	7	1	8	3	26	11	26	11	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500087	8	13674380	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	13674380	13674388	1	6	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	0	5	0	5	0	27	0	27	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500363	8	14352846	CA	C	540	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14352846	14352853	1	30	486.7	-	-	6	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	4	5	5	7	21	30	21	30	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500503	8	14723533	AT	A	300	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14723533	14723541	1	12	270.389	-	-	7	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	5	12	32	12	32	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500551	8	14878833	GA	G	300	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14878833	14878841	1	6	270.389	-	-	7	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	5	0	5	1	33	19	33	19	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500639	8	15117448	AT	A	300	PASS	-	-	-	-	-	Del	-	D	15117448	15117458	1	12	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	3	2	3	2	14	12	14	12	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500655	8	15179961	CA	C	329	PASS	-	-	-	-	-	Del	-	D	15179961	15179970	1	12	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	5	1	6	2	21	15	21	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500795	8	15573256	GA	G	720	PASS	TUSC3	CCDS5993.1	r.?	-	-	Del	intronic	D	15573256	15573266	1	48	645.321	-	-	9	1	1	TUSC3|CCDS5993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TUSC3|CCDS5993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	7	5	11	5	27	12	27	12	11	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500811	8	15614646	TA	T	300	PASS	TUSC3	CCDS5993.1	r.?	-	-	Del	intronic	D	15614646	15614654	1	12	267.981	-	-	7	1	1	TUSC3|CCDS5993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TUSC3|CCDS5993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	3	2	5	3	24	12	24	12	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500836	8	15680528	AT	A	300	PASS	-	-	-	-	-	Del	-	D	15680528	15680536	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	2	3	21	21	21	21	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760500894	8	15788034	CA	C	540	PASS	-	-	-	-	-	Del	-	D	15788034	15788044	1	30	486.098	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	5	5	5	24	21	24	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501022	8	16244170	CT	C	300	PASS	-	-	-	-	-	Del	-	D	16244170	16244180	1	12	269.787	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	3	8	15	8	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501189	8	16740400	CT	C	329	PASS	-	-	-	-	-	Del	-	D	16740400	16740410	1	15	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	4	2	20	9	20	9	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501230	8	16848880	TC	T	300	PASS	FGF20	CCDS5998.1	r.?	-	-	Del	downstream	D	16848880	16848886	1	10	269.185	-	-	5	1	1	FGF20|CCDS5998.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AC079193.1|ENST00000513892|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	4	1	4	17	24	17	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501308	8	17082105	G	GA	480	PASS	ZDHHC2	CCDS47810.1	r.?	-	-	Ins	downstream	I	17082105	17082115	1	24	427.806	-	-	9	1	1	ZDHHC2|CCDS47810.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZDHHC2|CCDS47810.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	7	4	29	33	29	33	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501319	8	17119924	ATATAT	A	269	PASS	VPS37A	CCDS6001.1	r.?	-	-	Del	intronic	D	17119924	17119933	5	12	270.389	-	-	1	1	1	VPS37A|CCDS6001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS37A|CCDS6001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	2	3	7	18	7	18	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501370	8	17264776	TA	T	300	PASS	MTMR7	CCDS34851.1	r.?	-	-	Del	intronic	D	17264776	17264786	1	10	270.389	-	-	9	1	1	MTMR7|CCDS34851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTMR7|CCDS34851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	1	4	2	5	19	24	19	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760501764	8	18158448	CT	C	540	PASS	-	-	-	-	-	Del	-	D	18158448	18158458	1	28	486.7	-	-	9	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	6	5	6	23	11	23	11	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502046	8	18921650	CA	C	540	PASS	-	-	-	-	-	Del	-	D	18921650	18921660	1	10	486.098	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	0	9	0	11	4	35	4	35	0	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502068	8	18955588	TA	T	300	PASS	-	-	-	-	-	Del	-	D	18955588	18955591	1	12	269.185	-	-	2	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	3	2	28	22	28	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502168	8	19280094	TG	T	300	PASS	CSGALNACT1	CCDS6010.1	r.?	-	-	Del	intronic	D	19280094	19280102	1	10	269.787	-	-	7	1	1	CSGALNACT1|CCDS6010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSGALNACT1|CCDS6010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	6	30	27	30	27	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502314	8	19750738	GA	G	360	PASS	-	-	-	-	-	Del	-	D	19750738	19750748	1	16	323.263	-	-	9	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	3	3	4	7	30	25	30	25	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502317	8	19757656	CA	C	480	PASS	-	-	-	-	-	Del	-	D	19757656	19757666	1	16	432.622	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	1	7	1	9	9	36	9	36	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502426	8	20067192	G	GT	300	PASS	ATP6V1B2	CCDS6014.1	r.?	-	-	Ins	intronic	I	20067192	20067200	1	12	267.379	-	-	7	1	1	ATP6V1B2|CCDS6014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP6V1B2|CCDS6014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	2	3	13	25	13	25	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502516	8	20464286	AC	A	420	PASS	-	-	-	-	-	Del	-	D	20464286	20464294	1	18	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	2	5	4	27	32	27	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502568	8	20677764	GT	G	420	PASS	-	-	-	-	-	Del	-	D	20677764	20677774	1	14	377.942	-	-	9	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	6	1	6	1	32	30	32	30	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502646	8	20969336	TA	T	420	PASS	-	-	-	-	-	Del	-	D	20969336	20969345	1	18	377.34	-	-	8	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	5	2	5	1	28	16	28	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502653	8	21008140	CA	C	467	PASS	-	-	-	-	-	Del	-	D	21008140	21008149	1	27	540.778	-	-	8	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	2	8	3	9	17	27	17	27	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502656	8	21017179	CT	C	449	PASS	-	-	-	-	-	Del	-	D	21017179	21017185	1	21	431.418	-	-	5	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	2	7	3	37	14	37	14	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502676	8	21159407	GT	G	300	PASS	-	-	-	-	-	Del	-	D	21159407	21159415	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	2	3	20	20	20	20	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502791	8	21536457	CG	C	480	PASS	-	-	-	-	-	Del	-	D	21536457	21536459	1	21	432.622	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	6	2	6	19	29	19	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502803	8	21581177	CG	C	660	PASS	GFRA2	CCDS47816.1	r.?	-	-	Del	intronic	D	21581177	21581179	1	36	594.856	-	-	1	1	1	GFRA2|CCDS47816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GFRA2|CCDS47816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	8	3	9	3	25	26	25	26	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502834	8	21667871	AC	A	540	PASS	-	-	-	-	-	Del	-	D	21667871	21667878	1	28	486.7	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	3	8	3	37	24	37	24	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502915	8	21821921	C	CA	300	PASS	XPO7	CCDS47817.1	r.?	-	-	Ins	intronic	I	21821921	21821931	1	12	265.572	-	-	9	1	1	XPO7|CCDS47817.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XPO7|CCDS47817.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	12	8	0	0	./.	2	3	2	5	31	26	31	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502971	8	21993317	TC	T	329	PASS	HR	CCDS6022.1	r.?	-	-	Del	upstream	D	21993317	21993321	1	15	323.263	-	-	3	1	1	HR|CCDS6022.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HR|CCDS6022.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	15	9	15	0	0	./.	2	4	3	6	21	32	21	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760502980	8	22035962	CT	C	420	PASS	BMP1	CCDS6026.1	r.?	-	-	Del	intronic	D	22035962	22035972	1	20	378.544	-	-	9	1	1	BMP1|CCDS6026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMP1|CCDS6026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	4	4	5	25	30	25	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760503142	8	22520320	G	GA	420	PASS	BIN3	CCDS47825.1	r.?	-	-	Ins	intronic	I	22520320	22520330	1	20	373.126	-	-	9	1	1	BIN3|CCDS47825.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BIN3|CCDS47825.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	3	7	3	33	27	33	27	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760503168	8	22573975	AG	A	360	PASS	PEBP4	CCDS43724.1	r.?	-	-	Del	intronic	D	22573975	22573982	1	12	324.467	-	-	6	1	1	PEBP4|CCDS43724.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEBP4|CCDS43724.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	1	5	3	5	29	27	29	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760503185	8	22632992	A	AG	420	PASS	PEBP4	CCDS43724.1	r.?	-	-	Ins	intronic	I	22632992	22633001	1	18	370.116	-	-	8	1	1	PEBP4|CCDS43724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PEBP4|CCDS43724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	5	3	7	33	25	33	26	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760503533	8	23456446	TA	T	329	PASS	-	-	-	-	-	Del	-	D	23456446	23456454	1	16	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	3	3	17	23	17	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760504040	8	25089345	AT	A	300	PASS	DOCK5	CCDS6047.1	r.?	-	-	Del	intronic	D	25089345	25089354	1	12	270.389	-	-	8	1	1	DOCK5|CCDS6047.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK5|CCDS6047.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	13	24	13	0	0	./.	3	2	3	3	14	27	14	27	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760504290	8	25683551	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	25683551	25683560	1	18	373.728	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	2	6	3	26	23	26	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760504383	8	25912738	AT	A	329	PASS	-	-	-	-	-	Del	-	D	25912738	25912747	1	15	323.263	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	4	2	3	15	4	15	5	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760504402	8	25957666	GA	G	480	PASS	-	-	-	-	-	Del	-	D	25957666	25957674	1	24	432.622	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	3	5	4	17	21	17	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760504649	8	26573999	AC	A	420	PASS	-	-	-	-	-	Del	-	D	26573999	26574001	1	20	378.544	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	5	4	20	28	20	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760504811	8	27069464	GT	G	300	PASS	-	-	-	-	-	Del	-	D	27069464	27069470	1	10	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	1	4	2	4	22	24	22	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505063	8	27767680	TTCTC	T	389	PASS	SCARA5	CCDS6064.1	r.?	-	-	Del	intronic	D	27767680	27767695	4	20	378.544	-	-	7	1	1	SCARA5|CCDS6064.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCARA5|CCDS6064.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	3	4	4	35	18	35	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505255	8	28252897	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	28252897	28252904	1	16	320.854	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	13	11	0	0	./.	3	3	3	6	18	30	18	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505423	8	28613271	TA	T	600	PASS	EXTL3	CCDS6070.1	r.?	-	-	Del	downstream	D	28613271	28613281	1	36	539.574	-	-	9	1	1	EXTL3|CCDS6070.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EXTL3|CCDS6070.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	12	16	12	0	0	./.	5	5	5	6	25	40	25	40	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505478	8	28767206	CA	C	420	PASS	HMBOX1	CCDS6071.1	r.?	-	-	Del	intronic	D	28767206	28767216	1	20	376.136	-	-	9	1	1	HMBOX1|CCDS6071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMBOX1|CCDS6071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	4	4	26	16	26	16	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505487	8	28790594	CT	C	360	PASS	HMBOX1	CCDS6071.1	r.?	-	-	Del	intronic	D	28790594	28790604	1	15	324.467	-	-	9	1	1	HMBOX1|CCDS6071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMBOX1|CCDS6071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	13	21	13	0	0	./.	2	4	3	6	24	35	24	35	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505492	8	28813079	ACT	A	300	PASS	HMBOX1	CCDS6071.1	r.?	-	-	Del	intronic	D	28813079	28813084	2	6	270.389	-	-	2	1	1	HMBOX1|CCDS6071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMBOX1|CCDS6071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	5	0	5	1	22	14	22	14	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505548	8	29033567	GA	G	300	PASS	KIF13B	ENST00000357808	r.?	-	-	Del	intronic	D	29033567	29033576	1	10	270.389	-	-	8	1	1	KIF13B|ENST00000357808|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF13B|ENST00000357808|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	5	2	26	21	26	21	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505585	8	29152878	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	29152878	29152885	1	12	260.756	-	-	6	1	1	-	-	./.	0	0	0	0	12	9	13	9	0	0	./.	2	3	3	4	27	21	27	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505628	8	29286905	GA	G	420	PASS	-	-	-	-	-	Del	-	D	29286905	29286915	1	14	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	1	8	3	35	22	35	22	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505667	8	29388025	G	GAT	269	PASS	-	-	-	-	-	Ins	-	I	29388025	29388036	2	12	263.164	-	-	5	1	1	-	-	./.	0	0	0	0	7	22	7	22	0	0	./.	2	3	3	3	26	28	27	28	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505745	8	29637578	CA	C	600	PASS	-	-	-	-	-	Del	-	D	29637578	29637588	1	35	535.961	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	6	4	11	30	31	30	31	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505748	8	29646212	CT	C	600	PASS	-	-	-	-	-	Del	-	D	29646212	29646221	1	32	540.778	-	-	8	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	7	3	7	4	25	27	25	27	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505811	8	29828773	CT	C	480	PASS	-	-	-	-	-	Del	-	D	29828773	29828783	1	24	429.612	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	5	4	7	28	30	28	30	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505861	8	29947834	CA	C	629	PASS	-	-	-	-	-	Del	-	D	29947834	29947843	1	42	594.254	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	5	6	6	6	21	36	21	36	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505897	8	30011942	G	GT	480	PASS	DCTN6	CCDS6076.1	r.?	-	-	Ins	upstream	I	30011942	30011949	1	24	427.806	-	-	6	1	1	DCTN6|CCDS6076.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	DCTN6|CCDS6076.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	10	11	10	12	0	0	./.	5	3	5	3	24	25	25	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505908	8	30025381	A	AT	300	PASS	DCTN6	CCDS6076.1	r.?	-	-	Ins	intronic	I	30025381	30025389	1	10	267.379	-	-	7	1	1	DCTN6|CCDS6076.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCTN6|CCDS6076.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	1	5	5	25	31	25	31	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505921	8	30077517	CATA	C	300	PASS	-	-	-	-	-	Del	-	D	30077517	30077525	3	12	270.389	-	-	2	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	2	3	3	3	26	31	26	31	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760505956	8	30182204	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	30182204	30182212	1	12	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	3	3	26	32	26	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506049	8	30396712	GT	G	300	PASS	RBPMS	CCDS6077.1	r.?	-	-	Del	intronic	D	30396712	30396718	1	12	270.389	-	-	5	1	1	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	3	2	3	2	19	10	19	10	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506055	8	30423229	CAA	C	300	PASS	RBPMS	CCDS6077.1	r.?	-	-	Del	intronic	D	30423229	30423233	2	12	268.583	-	-	3	1	1	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	4	24	21	24	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506095	8	30507289	C	CA	300	PASS	GTF2E2	CCDS6078.1	r.?	-	-	Ins	intronic	I	30507289	30507298	1	12	266.777	-	-	8	1	1	GTF2E2|CCDS6078.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GTF2E2|CCDS6078.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	2	6	3	28	31	28	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506277	8	30994188	T	TA	420	PASS	WRN	CCDS6082.1	r.?	-	-	Ins	intronic	I	30994188	30994198	1	18	374.33	-	-	9	1	1	WRN|CCDS6082.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WRN|CCDS6082.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	2	7	2	29	32	29	33	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506319	8	31151751	GT	G	600	PASS	-	-	-	-	-	Del	-	D	31151751	31151761	1	36	540.778	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	5	8	7	27	27	27	27	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506391	8	31409083	AT	A	360	PASS	-	-	-	-	-	Del	-	D	31409083	31409088	1	15	324.467	-	-	4	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	4	4	6	21	22	21	22	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506538	8	31894216	CT	C	420	PASS	NRG1	CCDS47836.1	r.?	-	-	Del	intronic	D	31894216	31894224	1	20	378.544	-	-	7	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	3	4	3	29	22	29	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506574	8	31996255	AT	A	600	PASS	NRG1	CCDS47836.1	r.?	-	-	Del	intronic	D	31996255	31996264	1	35	536.563	-	-	8	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	6	6	6	26	29	26	29	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506873	8	32707544	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	32707544	32707554	1	18	374.33	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	5	2	7	5	28	26	29	26	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760506931	8	33044221	ATAAT	A	358	PASS	-	-	-	-	-	Del	-	D	33044221	33044231	4	18	378.544	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	5	3	6	16	13	16	13	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507011	8	33305695	CA	C	360	PASS	FUT10	CCDS6088.1	r.?	-	-	Del	intronic	D	33305695	33305705	1	16	318.446	-	-	9	1	1	FUT10|CCDS6088.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FUT10|CCDS6088.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	7	7	20	20	20	20	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507111	8	33455533	TG	T	300	PASS	DUSP26	CCDS6092.1	r.?	-	-	Del	intronic	D	33455533	33455539	1	10	270.389	-	-	5	1	1	DUSP26|CCDS6092.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DUSP26|CCDS6092.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	4	1	5	2	17	20	17	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507139	8	33646865	GA	G	360	PASS	-	-	-	-	-	Del	-	D	33646865	33646870	1	16	322.661	-	-	4	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	4	4	25	23	25	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507237	8	33975065	TA	T	300	PASS	-	-	-	-	-	Del	-	D	33975065	33975073	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	3	2	30	18	30	18	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507240	8	33988174	CT	C	480	PASS	-	-	-	-	-	Del	-	D	33988174	33988184	1	25	432.02	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	4	5	4	33	24	33	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507297	8	34191001	AT	A	360	PASS	-	-	-	-	-	Del	-	D	34191001	34191007	1	7	324.467	-	-	5	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	0	6	0	8	3	26	3	26	0	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507368	8	34517923	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	34517923	34517929	1	24	478.873	-	-	5	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	7	2	10	3	42	26	42	26	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507449	8	34962610	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	34962610	34962619	1	12	267.379	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	3	2	36	22	36	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507462	8	35062689	TTGGA	T	360	PASS	-	-	-	-	-	Del	-	D	35062689	35062714	4	16	324.467	-	-	6	1	-	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	4	3	31	26	31	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507524	8	35297548	CT	C	420	PASS	UNC5D	CCDS6093.2	r.?	-	-	Del	intronic	D	35297548	35297553	1	14	378.544	-	-	4	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	6	1	6	3	25	27	25	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507616	8	35794968	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	35794968	35794982	2	16	324.467	-	-	6	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	3	3	5	13	33	13	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507621	8	35818749	CT	C	300	PASS	-	-	-	-	-	Del	-	D	35818749	35818757	1	6	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	0	6	0	18	3	18	3	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507709	8	36273881	CT	C	720	PASS	-	-	-	-	-	Del	-	D	36273881	36273891	1	48	648.933	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	7	5	9	6	23	21	23	21	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507742	8	36532615	TG	T	420	PASS	-	-	-	-	-	Del	-	D	36532615	36532623	1	20	371.922	-	-	7	1	-	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	3	5	19	24	19	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507850	8	36916266	GA	G	420	PASS	-	-	-	-	-	Del	-	D	36916266	36916276	1	14	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	1	7	4	21	21	21	21	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760507899	8	37100914	CAGG	C	480	PASS	-	-	-	-	-	Del	-	D	37100914	37100923	3	21	430.816	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	2	6	3	24	38	24	38	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508008	8	37418799	TG	T	360	PASS	-	-	-	-	-	Del	-	D	37418799	37418805	1	12	323.865	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	5	1	7	2	26	24	26	24	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508053	8	37572306	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	37572306	37572310	2	12	270.389	-	-	3	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	4	2	28	28	28	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508111	8	37768056	TA	T	360	PASS	-	-	-	-	-	Del	-	D	37768056	37768065	1	16	321.456	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	4	4	23	27	23	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508268	8	38122885	GT	G	269	PASS	DDHD2	CCDS34883.1	r.?	-	-	Del	downstream	D	38122885	38122894	1	12	270.389	-	-	8	1	1	DDHD2|CCDS34883.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PPAPDC1B|CCDS47841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	3	2	26	17	26	17	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508282	8	38182279	AC	A	420	PASS	WHSC1L1	CCDS43729.1	r.?	-	-	Del	intronic	D	38182279	38182287	1	20	376.738	-	-	7	1	1	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	3	4	3	4	27	17	27	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508327	8	38308680	AG	A	449	PASS	FGFR1	CCDS6107.2	r.?	-	-	Del	intronic	D	38308680	38308685	1	21	431.418	-	-	4	1	1	FGFR1|CCDS6107.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGFR1|CCDS6107.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	6	5	6	34	31	34	31	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508431	8	38584629	TG	T	360	PASS	TACC1	ENST00000443286	r.?	-	-	Del	upstream	D	38584629	38584634	1	12	323.865	-	-	4	1	1	TACC1|ENST00000443286|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TACC1|ENST00000443286|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	13	7	13	0	0	./.	1	5	4	7	22	33	22	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508491	8	38721025	CA	C	360	PASS	-	-	-	-	-	Del	-	D	38721025	38721035	1	16	318.446	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	6	4	32	24	32	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508699	8	39244648	AT	A	360	PASS	-	-	-	-	-	Del	-	D	39244648	39244656	1	15	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	4	2	6	5	31	24	31	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760508995	8	40047994	CA	C	360	PASS	-	-	-	-	-	Del	-	D	40047994	40048001	1	16	324.467	-	-	6	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	3	5	17	27	17	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509060	8	40284923	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	40284923	40284931	1	20	374.33	-	-	7	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	3	4	5	24	22	24	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509071	8	40316622	GAA	G	269	PASS	-	-	-	-	-	Del	-	D	40316622	40316627	2	12	270.389	-	-	4	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	4	3	27	25	27	25	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509247	8	40705930	G	GA	300	PASS	ZMAT4	CCDS34885.1	r.?	-	-	Ins	intronic	I	40705930	40705937	1	10	267.379	-	-	6	1	1	ZMAT4|CCDS34885.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZMAT4|CCDS34885.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	4	5	18	25	18	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509275	8	40822482	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	40822482	40822492	1	24	423.591	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	5	4	6	19	32	19	32	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509399	8	41191951	TG	T	300	PASS	-	-	-	-	-	Del	-	D	41191951	41191958	1	10	269.787	-	-	6	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	1	4	1	5	17	27	17	27	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509432	8	41296283	CA	C	720	PASS	-	-	-	-	-	Del	-	D	41296283	41296293	1	48	646.525	-	-	9	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	7	5	11	6	44	28	44	28	11	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509464	8	41343052	CA	C	629	PASS	-	-	-	-	-	Del	-	D	41343052	41343061	1	42	590.039	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	5	7	5	28	31	28	31	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509503	8	41434640	A	AT	509	PASS	AGPAT6	CCDS6117.1	r.?	-	-	Ins	upstream	I	41434640	41434650	1	28	477.067	-	-	9	1	1	AGPAT6|CCDS6117.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	AGPAT6|CCDS6117.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	8	15	8	16	0	0	./.	6	3	7	3	28	24	28	24	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509739	8	42091009	GT	G	300	PASS	-	-	-	-	-	Del	-	D	42091009	42091018	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	3	2	4	2	25	36	25	36	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509752	8	42149185	AT	A	300	PASS	IKBKB	CCDS6128.1	r.?	-	-	Del	intronic	D	42149185	42149195	1	12	270.389	-	-	9	1	1	IKBKB|CCDS6128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IKBKB|CCDS6128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	4	3	28	21	28	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509933	8	42721127	C	CA	329	PASS	RNF170	CCDS6138.1	r.?	-	-	Ins	intronic	I	42721127	42721136	1	16	307.609	-	-	8	1	1	RNF170|CCDS6138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF170|CCDS6138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	15	2	15	0	0	./.	3	3	3	5	5	26	5	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760509971	8	42890593	CA	C	540	PASS	HOOK3	CCDS6139.1	r.?	-	-	Del	downstream	D	42890593	42890603	1	18	483.088	-	-	9	1	1	HOOK3|CCDS6139.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HOOK3|CCDS6139.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	9	13	9	0	0	./.	8	1	11	1	28	18	28	18	11	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510002	8	42991741	CT	C	269	PASS	HGSNAT	CCDS47852.1	r.?	-	-	Del	upstream	D	42991741	42991751	1	12	268.583	-	-	9	1	1	HGSNAT|CCDS47852.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HGSNAT|CCDS47852.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	4	5	28	26	28	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510056	8	43259675	TG	T	540	PASS	-	-	-	-	-	Del	-	D	43259675	43259681	1	24	483.69	-	-	5	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	7	2	8	17	33	17	33	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510076	8	43443813	AT	A	480	PASS	-	-	-	-	-	Del	-	D	43443813	43443820	1	24	432.622	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	3	6	3	34	24	34	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510080	8	43445737	CT	C	420	PASS	-	-	-	-	-	Del	-	D	43445737	43445745	1	18	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	5	2	6	28	29	28	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510103	8	43532896	CT	C	465	PASS	-	-	-	-	-	Del	-	D	43532896	43532905	1	36	539.574	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	5	5	8	11	34	11	34	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510110	8	43568424	CT	C	480	PASS	-	-	-	-	-	Del	-	D	43568424	43568433	1	24	432.622	-	-	8	1	1	-	-	./.	0	0	0	0	11	26	11	26	0	0	./.	3	5	4	6	22	41	22	41	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510119	8	43610978	CT	C	360	PASS	-	-	-	-	-	Del	-	D	43610978	43610987	1	12	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	1	5	1	7	28	39	28	39	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510146	8	43712628	GT	G	360	PASS	-	-	-	-	-	Del	-	D	43712628	43712635	1	15	323.865	-	-	6	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	4	2	5	28	30	28	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510317	8	47054294	CCT	C	540	PASS	-	-	-	-	-	Del	-	D	47054294	47054301	2	30	486.7	-	-	3	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	5	5	5	21	21	21	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510329	8	47166632	GCC	G	480	PASS	-	-	-	-	-	Del	-	D	47166632	47166642	2	25	432.622	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	5	6	23	23	23	23	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510482	8	47756750	CA	C	300	PASS	-	-	-	-	-	Del	-	D	47756750	47756760	1	10	270.389	-	-	9	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	2	6	24	30	24	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510516	8	47952415	CT	C	389	PASS	-	-	-	-	-	Del	-	D	47952415	47952424	1	18	375.534	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	5	3	5	36	28	36	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510640	8	48486047	AC	A	600	PASS	KIAA0146	CCDS43737.1	r.?	-	-	Del	intronic	D	48486047	48486054	1	32	538.37	-	-	6	1	1	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	7	3	7	4	27	23	27	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510649	8	48518383	TA	T	480	PASS	KIAA0146	CCDS43737.1	r.?	-	-	Del	intronic	D	48518383	48518392	1	25	432.02	-	-	8	1	1	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	4	4	5	35	16	35	16	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510655	8	48550807	CT	C	420	PASS	KIAA0146	CCDS43737.1	r.?	-	-	Del	intronic	D	48550807	48550815	1	18	378.544	-	-	7	1	1	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	5	2	5	3	22	10	22	10	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510695	8	48716312	AC	A	360	PASS	PRKDC	ENST00000314191	r.?	-	-	Del	intronic	D	48716312	48716315	1	15	323.865	-	-	2	1	1	PRKDC|ENST00000314191|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKDC|ENST00000314191|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	4	3	5	23	23	23	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510730	8	48884454	GT	G	420	PASS	MCM4	CCDS6143.1	r.?	-	-	Del	intronic	D	48884454	48884463	1	20	376.136	-	-	8	1	1	MCM4|CCDS6143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCM4|CCDS6143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	4	6	22	28	22	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510770	8	48952290	CT	C	269	PASS	UBE2V2	CCDS43738.1	r.?	-	-	Del	intronic	D	48952290	48952300	1	12	270.389	-	-	9	1	1	UBE2V2|CCDS43738.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2V2|CCDS43738.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	6	3	23	15	23	15	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510816	8	49085708	G	GC	298	PASS	-	-	-	-	-	Ins	-	I	49085708	49085714	1	15	313.63	-	-	5	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	4	2	8	4	34	23	34	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760510830	8	49156862	CT	C	360	PASS	-	-	-	-	-	Del	-	D	49156862	49156870	1	15	323.865	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	2	7	16	26	16	26	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511000	8	50109100	AT	A	300	PASS	-	-	-	-	-	Del	-	D	50109100	50109108	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	3	2	27	21	27	21	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511007	8	50132918	GA	G	360	PASS	-	-	-	-	-	Del	-	D	50132918	50132926	1	16	322.661	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	6	4	26	19	26	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511102	8	50546346	CT	C	300	PASS	-	-	-	-	-	Del	-	D	50546346	50546351	1	12	270.389	-	-	4	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	3	2	32	22	32	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511234	8	51111699	GT	G	420	PASS	-	-	-	-	-	Del	-	D	51111699	51111709	1	14	377.942	-	-	9	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	1	6	3	7	18	31	18	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511270	8	51219464	CT	C	300	PASS	-	-	-	-	-	Del	-	D	51219464	51219474	1	12	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	2	3	3	3	6	18	6	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511388	8	51901505	C	CT	292	PASS	-	-	-	-	-	Ins	-	I	51901505	51901514	1	12	266.777	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	4	4	26	24	26	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511389	8	51932646	AT	A	300	PASS	-	-	-	-	-	Del	-	D	51932646	51932656	1	10	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	1	4	2	4	6	25	6	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511430	8	52179418	AT	A	480	PASS	-	-	-	-	-	Del	-	D	52179418	52179426	1	21	432.622	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	6	2	6	19	23	19	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511480	8	52384413	A	AT	260	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	intronic	I	52384413	52384420	1	14	374.33	-	-	6	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	1	6	1	30	18	30	19	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511488	8	52423376	G	GA	480	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	intronic	I	52423376	52423383	1	24	426.602	-	-	6	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	5	3	10	21	25	22	25	3	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511625	8	52792928	TA	T	300	PASS	PCMTD1	CCDS6148.1	r.?	-	-	Del	intronic	D	52792928	52792937	1	12	270.389	-	-	8	1	1	PCMTD1|CCDS6148.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCMTD1|CCDS6148.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	2	3	2	4	12	24	12	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511660	8	52889605	AT	A	397	PASS	-	-	-	-	-	Del	-	D	52889605	52889615	1	14	375.534	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	6	3	8	18	22	18	22	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511793	8	53428806	CG	C	420	PASS	-	-	-	-	-	Del	-	D	53428806	53428808	1	20	376.738	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	3	5	4	18	10	18	10	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511838	8	53609179	C	CA	300	PASS	RB1CC1	CCDS34892.1	r.?	-	-	Ins	intronic	I	53609179	53609185	1	12	267.379	-	-	5	1	1	RB1CC1|CCDS34892.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RB1CC1|CCDS34892.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	3	37	34	38	35	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511859	8	53667888	TG	T	300	PASS	-	-	-	-	-	Del	-	D	53667888	53667890	1	12	269.787	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	3	4	22	18	22	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511963	8	54000659	CT	C	300	PASS	-	-	-	-	-	Del	-	D	54000659	54000668	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	2	3	2	4	19	25	19	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511977	8	54065263	AT	A	540	PASS	-	-	-	-	-	Del	-	D	54065263	54065273	1	28	486.7	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	6	3	8	4	34	16	34	16	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760511992	8	54158545	A	AT	300	PASS	OPRK1	CCDS6152.1	r.?	-	-	Ins	intronic	I	54158545	54158553	1	12	266.175	-	-	7	1	1	OPRK1|CCDS6152.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OPRK1|CCDS6152.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	13	9	0	0	./.	2	3	2	3	27	28	27	28	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512198	8	54792853	TC	T	420	PASS	RGS20	CCDS6155.1	r.?	-	-	Del	intronic	D	54792853	54792861	1	20	377.942	-	-	7	1	1	RGS20|CCDS6155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS20|CCDS6155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	4	5	5	20	23	20	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512240	8	54933894	CA	C	540	PASS	TCEA1	CCDS47858.1	r.?	-	-	Del	intronic	D	54933894	54933903	1	30	486.7	-	-	8	1	1	TCEA1|CCDS47858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCEA1|CCDS47858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	4	7	6	31	24	31	24	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512387	8	55222384	AT	A	420	PASS	-	-	-	-	-	Del	-	D	55222384	55222393	1	18	378.544	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	5	2	5	3	34	18	34	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512408	8	55276815	AT	A	480	PASS	-	-	-	-	-	Del	-	D	55276815	55276824	1	24	432.622	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	5	4	5	24	23	24	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512494	8	55475658	CAG	C	300	PASS	RP1	ENST00000427058	r.?	-	-	Del	intronic	D	55475658	55475675	2	12	270.389	-	-	8	1	1	RP1|ENST00000427058|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RP1|ENST00000427058|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	4	5	22	20	22	20	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512541	8	55635852	AT	A	360	PASS	RP1	ENST00000427058	r.?	-	-	Del	intronic	D	55635852	55635861	1	15	324.467	-	-	8	1	1	RP1|ENST00000427058|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RP1|ENST00000427058|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	4	2	4	3	29	25	29	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512554	8	55693114	TA	T	420	PASS	-	-	-	-	-	Del	-	D	55693114	55693120	1	18	378.544	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	5	3	6	20	33	20	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512712	8	56241392	A	AC	360	PASS	XKR4	CCDS34893.1	r.?	-	-	Ins	intronic	I	56241392	56241398	1	16	320.854	-	-	5	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	3	5	19	29	19	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512802	8	56569263	GA	G	250	PASS	-	-	-	-	-	Del	-	D	56569263	56569271	1	12	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	5	2	28	22	28	22	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512902	8	56856644	C	CA	420	PASS	ENSG00000249529	ENST00000502902	r.?	-	-	Ins	intronic	I	56856644	56856654	1	8	373.126	-	-	9	1	1	ENSG00000249529|ENST00000502902|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000249529|ENST00000502902|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	0	7	0	7	0	27	0	27	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760512905	8	56872963	GA	G	420	PASS	ENSG00000249529	ENST00000502902	r.?	-	-	Del	intronic	D	56872963	56872971	1	20	378.544	-	-	7	1	1	ENSG00000249529|ENST00000502902|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000249529|ENST00000502902|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	3	4	4	7	20	18	20	18	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513002	8	57260358	CT	C	360	PASS	-	-	-	-	-	Del	-	D	57260358	57260366	1	15	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	3	4	17	23	17	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513074	8	57437461	GC	G	300	PASS	AC012349.1	ENST00000499425	r.?	-	-	Del	intronic	D	57437461	57437469	1	12	268.583	-	-	7	1	1	AC012349.1|ENST00000499425|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC012349.1|ENST00000499425|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	3	31	32	31	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513126	8	57651405	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	57651405	57651412	1	12	267.379	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	5	23	22	23	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513179	8	57794266	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	57794266	57794276	1	12	267.379	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	13	12	0	0	./.	3	2	3	4	20	35	20	35	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513188	8	57875157	CT	C	300	PASS	IMPAD1	CCDS6169.1	r.2557delA	c.?	p.?	Del	3'UTR variant	D	57875157	57875167	1	6	269.185	-	-	9	1	1	IMPAD1|CCDS6169.1|r.2557delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	IMPAD1|CCDS6169.1|r.2557delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	11	15	11	0	0	./.	0	5	1	5	25	22	25	22	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513337	8	58533269	CA	C	420	PASS	-	-	-	-	-	Del	-	D	58533269	58533278	1	20	378.544	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	4	7	29	28	29	28	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513346	8	58608244	GA	G	300	PASS	-	-	-	-	-	Del	-	D	58608244	58608252	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	6	2	34	27	34	27	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513415	8	58973104	GTAT	G	509	PASS	FAM110B	CCDS6170.1	r.?	-	-	Del	intronic	D	58973104	58973112	3	28	486.7	-	-	2	1	1	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	3	6	3	7	25	37	25	37	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513422	8	59008744	CTT	C	420	PASS	FAM110B	CCDS6170.1	r.?	-	-	Del	intronic	D	59008744	59008753	2	20	377.34	-	-	8	1	1	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	4	3	4	35	25	35	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513514	8	59307992	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	59307992	59308001	1	6	267.379	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	15	10	0	0	./.	5	0	6	1	24	14	25	14	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513591	8	59636783	AT	A	420	PASS	-	-	-	-	-	Del	-	D	59636783	59636792	1	18	377.942	-	-	8	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	5	2	6	2	27	24	27	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513670	8	59905329	A	AT	780	PASS	TOX	CCDS34897.1	r.?	-	-	Ins	intronic	I	59905329	59905335	1	56	693.378	-	-	5	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	7	8	7	34	27	34	27	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513672	8	59907810	GT	G	360	PASS	TOX	CCDS34897.1	r.?	-	-	Del	intronic	D	59907810	59907818	1	7	324.467	-	-	7	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	6	0	7	3	26	25	26	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513778	8	60256643	GT	G	360	PASS	-	-	-	-	-	Del	-	D	60256643	60256651	1	12	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	1	5	1	5	25	20	25	20	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513795	8	60319087	CT	C	300	PASS	-	-	-	-	-	Del	-	D	60319087	60319097	1	12	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	6	4	29	24	29	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513957	8	61084043	CT	C	480	PASS	-	-	-	-	-	Del	-	D	61084043	61084052	1	21	432.622	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	6	2	6	3	26	24	26	24	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760513971	8	61123187	TTC	T	300	PASS	CA8	CCDS6174.1	r.?	-	-	Del	intronic	D	61123187	61123195	2	12	268.583	-	-	3	1	1	CA8|CCDS6174.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA8|CCDS6174.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	2	4	22	28	22	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514005	8	61197523	CT	C	480	PASS	CA8	CCDS6174.1	r.?	-	-	Del	upstream	D	61197523	61197532	1	21	432.622	-	-	8	1	1	CA8|CCDS6174.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CA8|CCDS6174.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	9	12	9	0	0	./.	6	2	8	3	25	12	25	12	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514049	8	61322481	CG	C	480	PASS	AC022555.2	ENST00000506428	r.?	-	-	Del	intronic	D	61322481	61322488	1	25	430.214	-	-	6	1	1	AC022555.2|ENST00000506428|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC022555.2|ENST00000506428|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	4	8	4	29	27	29	27	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514195	8	61700124	CT	C	389	PASS	CHD7	CCDS47865.1	r.?	-	-	Del	intronic	D	61700124	61700132	1	20	378.544	-	-	7	1	1	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	4	5	6	30	21	30	21	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514209	8	61748467	GT	G	720	PASS	CHD7	CCDS47865.1	r.?	-	-	Del	intronic	D	61748467	61748472	1	49	648.933	-	-	4	1	1	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	6	6	6	10	39	38	39	38	6	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514220	8	61801323	GA	G	420	PASS	-	-	-	-	-	Del	-	D	61801323	61801330	1	18	378.544	-	-	6	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	2	5	3	5	24	29	24	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514253	8	61877600	CT	C	300	PASS	-	-	-	-	-	Del	-	D	61877600	61877610	1	10	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	6	3	28	16	28	16	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514276	8	61962383	CT	C	300	PASS	-	-	-	-	-	Del	-	D	61962383	61962392	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	2	3	2	35	19	35	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514306	8	62066779	TG	T	300	PASS	-	-	-	-	-	Del	-	D	62066779	62066781	1	12	269.185	-	-	1	1	-	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	3	2	4	2	24	24	24	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514401	8	62358166	CT	C	480	PASS	CLVS1	CCDS6176.1	r.?	-	-	Del	intronic	D	62358166	62358175	1	24	432.622	-	-	8	1	1	CLVS1|CCDS6176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLVS1|CCDS6176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	5	3	5	6	24	22	24	22	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514441	8	62467307	AT	A	569	PASS	ASPH	CCDS34898.1	r.?	-	-	Del	intronic	D	62467307	62467314	1	36	531.145	-	-	6	1	1	ASPH|CCDS34898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASPH|CCDS34898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	5	5	5	21	21	21	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514523	8	62823140	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	62823140	62823149	1	20	374.33	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	14	9	0	0	./.	3	4	3	4	26	29	26	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514603	8	63112963	CT	C	300	PASS	-	-	-	-	-	Del	-	D	63112963	63112973	1	10	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	5	1	21	17	21	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514609	8	63146591	AT	A	300	PASS	-	-	-	-	-	Del	-	D	63146591	63146600	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	3	5	23	17	23	17	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514715	8	63582151	CA	C	360	PASS	NKAIN3	ENST00000328472	r.?	-	-	Del	intronic	D	63582151	63582160	1	16	324.467	-	-	8	1	1	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	3	3	3	25	20	25	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514796	8	63852252	CA	C	480	PASS	-	-	-	-	-	Del	-	D	63852252	63852260	1	25	432.622	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	4	5	5	16	20	16	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514813	8	63947588	GC	G	300	PASS	GGH	CCDS6177.1	r.?	-	-	Del	intronic	D	63947588	63947596	1	12	269.185	-	-	7	1	1	GGH|CCDS6177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GGH|CCDS6177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	5	4	29	29	29	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514896	8	64264096	AT	A	300	PASS	-	-	-	-	-	Del	-	D	64264096	64264099	1	10	270.389	-	-	2	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	4	1	5	2	13	27	13	27	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760514910	8	64390517	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	64390517	64390527	1	15	319.65	-	-	9	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	2	4	2	4	31	25	31	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515073	8	65224287	GA	G	360	PASS	-	-	-	-	-	Del	-	D	65224287	65224297	1	12	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	1	11	2	40	21	40	21	11	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515132	8	65413160	GA	G	420	PASS	-	-	-	-	-	Del	-	D	65413160	65413168	1	14	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	1	6	1	28	10	28	10	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515146	8	65486203	AT	A	360	PASS	-	-	-	-	-	Del	-	D	65486203	65486213	1	12	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	1	6	1	19	17	19	17	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515165	8	65630120	AT	A	300	PASS	CYP7B1	CCDS6180.1	r.?	-	-	Del	intronic	D	65630120	65630128	1	10	270.389	-	-	7	1	1	CYP7B1|CCDS6180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP7B1|CCDS6180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	1	7	6	25	6	25	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515211	8	65802694	GA	G	540	PASS	-	-	-	-	-	Del	-	D	65802694	65802704	1	30	486.7	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	5	4	6	5	15	28	15	28	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515269	8	66181752	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	66181752	66181762	1	12	320.854	-	-	9	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	5	1	5	2	39	19	39	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515449	8	66685511	T	TA	360	PASS	PDE7A	CCDS34901.1	r.?	-	-	Ins	intronic	I	66685511	66685520	1	15	320.854	-	-	8	1	1	PDE7A|CCDS34901.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE7A|CCDS34901.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	3	6	19	27	19	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515450	8	66687637	AT	A	300	PASS	PDE7A	CCDS34901.1	r.?	-	-	Del	intronic	D	66687637	66687644	1	6	270.389	-	-	6	1	1	PDE7A|CCDS34901.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE7A|CCDS34901.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	5	0	6	0	22	4	22	4	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515484	8	66948632	CA	C	300	PASS	DNAJC5B	CCDS6183.1	r.?	-	-	Del	intronic	D	66948632	66948640	1	12	270.389	-	-	7	1	1	DNAJC5B|CCDS6183.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DNAJC5B|CCDS6183.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	6	9	28	29	28	29	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515510	8	67070188	TC	T	300	PASS	TRIM55	CCDS6187.1	r.?	-	-	Del	intronic	D	67070188	67070194	1	10	270.389	-	-	5	1	1	TRIM55|CCDS6187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM55|CCDS6187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	1	4	2	5	14	27	14	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515603	8	67396728	CT	C	360	PASS	-	-	-	-	-	Del	-	D	67396728	67396737	1	15	322.058	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	2	8	2	36	25	36	25	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515607	8	67407845	C	CT	540	PASS	C8orf46	CCDS6191.2	r.?	-	-	Ins	intronic	I	67407845	67407852	1	24	481.282	-	-	6	1	1	C8orf46|CCDS6191.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf46|CCDS6191.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	7	2	7	2	28	12	31	13	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515680	8	67664828	TG	T	360	PASS	SGK3	CCDS6195.1	r.?	-	-	Del	intronic	D	67664828	67664836	1	15	324.467	-	-	7	1	1	SGK3|CCDS6195.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SGK3|CCDS6195.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	4	2	20	16	20	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515716	8	67801868	C	CA	360	PASS	C8orf45	CCDS6197.2	r.?	-	-	Ins	intronic	I	67801868	67801877	1	16	320.854	-	-	8	1	1	C8orf45|CCDS6197.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf45|CCDS6197.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	3	5	3	38	33	38	33	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515958	8	68666010	TA	T	480	PASS	-	-	-	-	-	Del	-	D	68666010	68666019	1	21	430.816	-	-	8	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	6	2	6	2	25	22	25	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760515992	8	68735682	TG	T	420	PASS	-	-	-	-	-	Del	-	D	68735682	68735690	1	20	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	4	3	22	19	22	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516071	8	68986503	AT	A	540	PASS	PREX2	CCDS6201.1	r.?	-	-	Del	intronic	D	68986503	68986513	1	30	479.475	-	-	9	1	1	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	5	4	6	25	23	25	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516197	8	69541290	CTT	C	420	PASS	C8orf34	CCDS6203.1	r.?	-	-	Del	intronic	D	69541290	69541293	2	18	378.544	-	-	2	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	5	2	6	4	26	24	26	24	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516203	8	69589594	C	CT	420	PASS	C8orf34	CCDS6203.1	r.?	-	-	Ins	intronic	I	69589594	69589604	1	14	374.33	-	-	9	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	6	1	8	2	21	36	22	37	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516209	8	69618029	GA	G	540	PASS	C8orf34	CCDS6203.1	r.?	-	-	Del	intronic	D	69618029	69618039	1	30	486.098	-	-	9	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	4	5	9	9	25	19	25	19	9	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516212	8	69647306	GT	G	420	PASS	C8orf34	CCDS6203.1	r.?	-	-	Del	intronic	D	69647306	69647311	1	18	378.544	-	-	4	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	5	2	6	4	26	19	26	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516260	8	69828134	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	69828134	69828144	1	8	373.126	-	-	9	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	7	0	8	0	34	5	34	5	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516323	8	69987937	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	69987937	69987948	2	12	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	4	5	17	29	17	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516384	8	70166333	GA	G	288	PASS	-	-	-	-	-	Del	-	D	70166333	70166343	1	10	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	2	5	21	30	21	30	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516448	8	70400454	CA	C	420	PASS	SULF1	CCDS6204.1	r.?	-	-	Del	upstream	D	70400454	70400464	1	20	378.544	-	-	9	1	1	SULF1|CCDS6204.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SULF1|CCDS6204.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	4	3	4	4	21	35	21	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516484	8	70502406	CT	C	300	PASS	SULF1	CCDS6204.1	r.?	-	-	Del	intronic	D	70502406	70502415	1	12	269.787	-	-	8	1	1	SULF1|CCDS6204.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SULF1|CCDS6204.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	4	3	16	31	16	31	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516714	8	71160441	AT	A	420	PASS	NCOA2	CCDS47872.1	r.?	-	-	Del	intronic	D	71160441	71160447	1	20	378.544	-	-	5	1	1	NCOA2|CCDS47872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCOA2|CCDS47872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	3	8	3	28	32	28	32	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516723	8	71201853	C	CA	600	PASS	NCOA2	CCDS47872.1	r.?	-	-	Ins	intronic	I	71201853	71201860	1	27	534.757	-	-	6	1	1	NCOA2|CCDS47872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NCOA2|CCDS47872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	8	5	10	32	33	33	33	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516756	8	71330347	ACTT	A	420	PASS	-	-	-	-	-	Del	-	D	71330347	71330354	3	18	378.544	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	2	5	4	29	28	29	28	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516782	8	71385964	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	71385964	71385973	1	12	267.379	-	-	8	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	2	3	2	5	9	18	9	18	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760516937	8	71821049	TA	T	600	PASS	-	-	-	-	-	Del	-	D	71821049	71821058	1	35	540.778	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	4	7	6	17	29	17	29	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760517027	8	72131064	TG	T	300	PASS	EYA1	CCDS34906.1	r.?	-	-	Del	intronic	D	72131064	72131071	1	12	269.185	-	-	6	1	1	EYA1|CCDS34906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYA1|CCDS34906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	11	24	11	0	0	./.	3	2	3	4	31	27	31	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760517340	8	73342716	CT	C	300	PASS	ENSG00000212989	ENST00000391672	r.?	-	-	Del	downstream	D	73342716	73342725	1	10	270.389	-	-	8	1	1	ENSG00000212989|ENST00000391672|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000212989|ENST00000391672|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	5	2	20	19	20	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760517369	8	73445887	CT	C	360	PASS	-	-	-	-	-	Del	-	D	73445887	73445897	1	16	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	4	10	30	10	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760517389	8	73534821	T	TA	540	PASS	KCNB2	CCDS6209.1	r.?	-	-	Ins	intronic	I	73534821	73534830	1	30	481.282	-	-	8	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	4	5	4	26	36	26	37	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760517560	8	74162875	CT	C	269	PASS	-	-	-	-	-	Del	-	D	74162875	74162883	1	6	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	0	5	0	19	5	19	5	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760517821	8	74885431	C	CT	360	PASS	TMEM70	CCDS47876.1	r.?	-	-	Ins	upstream	I	74885431	74885441	1	12	320.252	-	-	9	1	1	TMEM70|CCDS47876.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TMEM70|CCDS47876.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	22	15	22	15	0	0	./.	1	5	1	6	22	30	23	31	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518076	8	75663069	TATAG	T	420	PASS	-	-	-	-	-	Del	-	D	75663069	75663077	4	14	378.544	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	6	1	6	13	17	13	17	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518124	8	75843345	CT	C	300	PASS	-	-	-	-	-	Del	-	D	75843345	75843353	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	4	3	29	20	29	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518253	8	76281693	AT	A	300	PASS	-	-	-	-	-	Del	-	D	76281693	76281699	1	10	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	7	2	30	19	30	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518339	8	76548156	C	CT	346	PASS	-	-	-	-	-	Ins	-	I	76548156	76548164	1	15	320.854	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	4	2	8	3	31	26	31	26	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518406	8	76848636	AT	A	420	PASS	-	-	-	-	-	Del	-	D	76848636	76848645	1	20	376.738	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	4	5	5	24	21	24	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518656	8	77828470	AT	A	360	PASS	-	-	-	-	-	Del	-	D	77828470	77828479	1	12	314.232	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	1	7	2	33	10	33	10	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518778	8	78257947	CT	C	300	PASS	-	-	-	-	-	Del	-	D	78257947	78257953	1	10	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	2	6	19	19	19	19	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760518971	8	78912592	ATC	A	360	PASS	-	-	-	-	-	Del	-	D	78912592	78912607	2	16	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	3	3	4	3	38	12	38	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519189	8	79712712	GT	G	300	PASS	IL7	CCDS6224.1	r.?	-	-	Del	intronic	D	79712712	79712718	1	6	270.389	-	-	5	1	1	IL7|CCDS6224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL7|CCDS6224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	0	5	0	7	12	28	12	28	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519208	8	79820725	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	79820725	79820732	1	12	320.854	-	-	6	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	5	1	6	4	26	31	26	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519225	8	79939028	GAA	G	420	PASS	-	-	-	-	-	Del	-	D	79939028	79939038	2	18	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	5	2	7	5	23	18	23	18	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519360	8	80677424	TA	T	300	PASS	HEY1	CCDS43749.1	r.1125delU	c.925delT	p.*309fs*5	Del	frameshift	D	80677424	80677430	1	12	270.389	-	-	5	1	1	HEY1|CCDS43749.1|r.1125delU|c.925delT|p.*309fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HEY1|CCDS43749.1|r.1125delU|c.925delT|p.*309fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	5	3	20	23	20	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519627	8	81331202	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	81331202	81331212	1	16	320.854	-	-	9	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	3	3	4	3	31	25	31	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519628	8	81338255	CA	C	300	PASS	-	-	-	-	-	Del	-	D	81338255	81338265	1	12	267.981	-	-	9	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	2	3	3	3	32	22	32	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519949	8	82690654	T	TTC	300	PASS	-	-	-	-	-	Ins	-	I	82690654	82690656	2	10	251.725	-	-	0	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	1	5	16	31	16	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760519978	8	82770017	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	82770017	82770026	1	20	374.33	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	9	15	0	0	./.	4	3	4	3	28	26	29	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520013	8	82932367	TA	T	420	PASS	-	-	-	-	-	Del	-	D	82932367	82932375	1	20	377.942	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	4	5	6	25	19	25	19	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520034	8	83100270	CA	C	420	PASS	-	-	-	-	-	Del	-	D	83100270	83100278	1	18	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	2	5	3	27	16	27	16	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520048	8	83286377	AG	A	420	PASS	-	-	-	-	-	Del	-	D	83286377	83286383	1	18	378.544	-	-	5	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	2	6	4	24	28	24	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520086	8	83534926	CA	C	300	PASS	-	-	-	-	-	Del	-	D	83534926	83534932	1	6	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	0	5	0	5	0	23	0	23	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520353	8	84520609	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	84520609	84520617	1	35	532.951	-	-	7	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	6	4	7	5	27	13	27	13	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520453	8	84789337	C	CT	315	PASS	-	-	-	-	-	Ins	-	I	84789337	84789344	1	14	374.33	-	-	6	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	1	6	2	6	22	31	22	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520511	8	84965276	GA	G	360	PASS	-	-	-	-	-	Del	-	D	84965276	84965286	1	16	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	3	3	3	4	28	19	28	19	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520577	8	85212016	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	85212016	85212023	1	20	373.728	-	-	6	1	1	-	-	./.	0	0	0	0	22	14	23	14	0	0	./.	4	3	4	3	21	30	21	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520615	8	85384925	GA	G	300	PASS	-	-	-	-	-	Del	-	D	85384925	85384935	1	12	269.185	-	-	9	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	3	2	5	3	34	32	34	32	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520654	8	85503101	AT	A	360	PASS	-	-	-	-	-	Del	-	D	85503101	85503110	1	7	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	6	1	6	2	24	2	24	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520671	8	85704142	TC	T	300	PASS	RALYL	ENST00000399361	r.?	-	-	Del	intronic	D	85704142	85704150	1	10	267.379	-	-	7	1	1	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	1	4	1	4	20	32	20	32	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520676	8	85727854	AT	A	300	PASS	RALYL	ENST00000399361	r.?	-	-	Del	intronic	D	85727854	85727862	1	6	270.389	-	-	7	1	1	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	5	0	5	0	21	0	21	0	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520733	8	86032546	TG	T	360	PASS	LRRCC1	CCDS43750.1	r.?	-	-	Del	intronic	D	86032546	86032554	1	12	324.467	-	-	7	1	1	LRRCC1|CCDS43750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRCC1|CCDS43750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	1	5	2	6	19	25	19	25	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520808	8	86306289	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	86306289	86306296	1	18	374.33	-	-	6	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	5	2	8	2	30	23	30	23	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520814	8	86330280	CT	C	360	PASS	-	-	-	-	-	Del	-	D	86330280	86330286	1	15	323.865	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	4	4	18	27	18	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520887	8	86935022	TA	T	300	PASS	-	-	-	-	-	Del	-	D	86935022	86935028	1	10	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	5	2	31	13	31	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520948	8	87152212	C	CA	540	PASS	ATP6V0D2	CCDS6241.1	r.?	-	-	Ins	intronic	I	87152212	87152221	1	28	480.68	-	-	8	1	1	ATP6V0D2|CCDS6241.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP6V0D2|CCDS6241.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	6	3	6	4	34	32	34	33	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520967	8	87257505	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	87257505	87257513	1	10	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	1	4	1	4	5	10	5	10	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760520978	8	87303796	GA	G	300	PASS	-	-	-	-	-	Del	-	D	87303796	87303804	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	3	2	3	3	26	15	26	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521040	8	87494633	CA	C	420	PASS	CPNE3	CCDS6243.1	r.?	-	-	Del	upstream	D	87494633	87494642	1	20	369.514	-	-	8	1	1	CPNE3|CCDS6243.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FAM82B|CCDS34918.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	3	4	3	4	21	34	21	34	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521113	8	87761359	AT	A	480	PASS	-	-	-	-	-	Del	-	D	87761359	87761369	1	24	431.418	-	-	9	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	5	5	5	13	14	13	14	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521137	8	87829177	AT	A	300	PASS	-	-	-	-	-	Del	-	D	87829177	87829185	1	10	269.787	-	-	7	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	1	4	2	5	22	26	22	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521250	8	88317391	CA	C	420	PASS	CNBD1	ENST00000319712	r.?	-	-	Del	intronic	D	88317391	88317399	1	20	378.544	-	-	7	1	1	CNBD1|ENST00000319712|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNBD1|ENST00000319712|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	3	4	4	5	20	22	20	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521318	8	88585950	TA	T	540	PASS	-	-	-	-	-	Del	-	D	88585950	88585958	1	18	486.7	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	8	1	12	1	23	15	23	15	12	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521483	8	89188231	G	GT	480	PASS	MMP16	CCDS6246.1	r.?	-	-	Ins	intronic	I	89188231	89188238	1	9	427.806	-	-	6	1	1	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	16	14	0	0	./.	8	0	9	1	31	20	31	20	9	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521627	8	89556659	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	89556659	89556667	1	10	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	4	1	5	4	29	11	29	11	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760521850	8	90363562	AT	A	420	PASS	-	-	-	-	-	Del	-	D	90363562	90363569	1	20	378.544	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	4	6	18	24	18	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522040	8	91225477	AT	A	300	PASS	-	-	-	-	-	Del	-	D	91225477	91225487	1	10	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	6	1	31	16	31	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522152	8	91685216	GA	G	300	PASS	-	-	-	-	-	Del	-	D	91685216	91685226	1	12	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	4	2	27	10	27	10	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522187	8	91994991	AT	A	300	PASS	-	-	-	-	-	Del	-	D	91994991	91995001	1	6	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	0	5	0	5	8	19	8	19	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522423	8	93068993	CT	C	360	PASS	RUNX1T1	CCDS47891.1	r.?	-	-	Del	intronic	D	93068993	93069002	1	15	319.048	-	-	8	1	1	RUNX1T1|CCDS47891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUNX1T1|CCDS47891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	4	3	5	21	22	21	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522500	8	93389643	TA	T	300	PASS	-	-	-	-	-	Del	-	D	93389643	93389651	1	10	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	5	1	24	19	24	19	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522555	8	93619589	CT	C	300	PASS	-	-	-	-	-	Del	-	D	93619589	93619598	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	3	4	22	17	22	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522588	8	93813403	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	93813403	93813420	2	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	10	2	24	13	24	13	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522630	8	94016018	CA	C	600	PASS	-	-	-	-	-	Del	-	D	94016018	94016027	1	32	540.778	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	7	6	10	29	45	29	45	6	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522668	8	94154691	AT	A	300	PASS	-	-	-	-	-	Del	-	D	94154691	94154701	1	6	269.185	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	0	5	1	6	16	19	16	19	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522687	8	94225511	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	94225511	94225520	1	18	374.33	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	5	2	6	6	34	20	34	20	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522764	8	94532387	TG	T	471	PASS	AC011118.2	ENST00000501400	r.?	-	-	Del	intronic	D	94532387	94532393	1	36	540.778	-	-	5	1	1	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	5	5	5	5	27	40	27	40	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522765	8	94539382	CA	C	420	PASS	AC011118.2	ENST00000501400	r.?	-	-	Del	intronic	D	94539382	94539391	1	20	377.34	-	-	8	1	1	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	4	3	6	3	36	23	36	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522852	8	94855213	GT	G	329	PASS	-	-	-	-	-	Del	-	D	94855213	94855222	1	16	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	3	5	4	35	19	35	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760522903	8	94984020	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	94984020	94984030	1	18	373.126	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	2	6	4	30	17	30	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523323	8	95930318	AT	A	540	PASS	C8orf38	ENST00000396113	r.?	-	-	Del	intronic	D	95930318	95930327	1	30	486.7	-	-	8	1	1	C8orf38|ENST00000396113|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C8orf38|ENST00000396113|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	4	6	6	28	30	28	30	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523475	8	96273843	GT	G	420	PASS	C8orf37	CCDS6268.1	r.?	-	-	Del	intronic	D	96273843	96273853	1	20	378.544	-	-	9	1	1	C8orf37|CCDS6268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf37|CCDS6268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	3	5	5	31	34	31	34	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523498	8	96369309	GT	G	300	PASS	-	-	-	-	-	Del	-	D	96369309	96369319	1	6	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	0	7	1	23	23	23	23	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523600	8	96663266	AT	A	389	PASS	-	-	-	-	-	Del	-	D	96663266	96663275	1	18	377.942	-	-	8	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	2	5	2	5	26	17	26	17	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523669	8	96848654	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	96848654	96848656	1	20	374.33	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	3	6	5	29	35	29	35	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523766	8	97215092	GT	G	300	PASS	-	-	-	-	-	Del	-	D	97215092	97215101	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	4	3	18	28	18	28	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523776	8	97249025	CT	C	300	PASS	UQCRB	CCDS6269.1	r.?	-	-	Del	upstream	D	97249025	97249034	1	12	270.389	-	-	8	1	1	UQCRB|CCDS6269.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	UQCRB|CCDS6269.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	20	7	20	7	0	0	./.	3	2	5	6	20	32	20	32	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523785	8	97279063	AT	A	780	PASS	PTDSS1	CCDS6271.1	r.?	-	-	Del	intronic	D	97279063	97279070	1	44	702.409	-	-	6	1	1	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	10	6	12	18	32	18	32	6	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523799	8	97342740	TA	T	300	PASS	PTDSS1	CCDS6271.1	r.?	-	-	Del	intronic	D	97342740	97342748	1	12	270.389	-	-	7	1	1	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	4	5	28	34	28	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760523900	8	97630204	TA	T	420	PASS	-	-	-	-	-	Del	-	D	97630204	97630214	1	18	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	3	6	26	25	26	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524019	8	98122879	C	CT	300	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Ins	intronic	I	98122879	98122887	1	10	267.379	-	-	7	1	1	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	4	1	6	2	28	34	28	34	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524108	8	98478296	TA	T	360	PASS	-	-	-	-	-	Del	-	D	98478296	98478305	1	15	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	2	4	2	5	11	22	11	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524122	8	98556489	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	98556489	98556498	1	12	267.379	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	3	30	30	30	30	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524138	8	98592635	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	98592635	98592644	1	20	373.728	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	17	11	0	0	./.	4	3	7	4	34	24	35	24	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524253	8	98853564	CT	C	360	PASS	LAPTM4B	CCDS6275.1	r.?	-	-	Del	intronic	D	98853564	98853573	1	15	324.467	-	-	8	1	1	LAPTM4B|CCDS6275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAPTM4B|CCDS6275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	4	2	7	2	24	20	24	20	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524477	8	99367753	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	99367753	99367759	1	6	267.379	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	11	10	0	0	./.	0	5	0	6	31	32	31	32	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524488	8	99414203	AC	A	300	PASS	-	-	-	-	-	Del	-	D	99414203	99414209	1	12	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	2	4	8	22	8	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524581	8	99780838	CA	C	420	PASS	ENSG00000104375	CCDS47900.1	r.?	-	-	Del	intronic	D	99780838	99780843	1	20	378.544	-	-	4	1	1	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	3	5	4	17	19	17	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760524800	8	100792780	GT	G	300	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100792780	100792788	1	12	270.389	-	-	7	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	3	4	29	18	29	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525034	8	101632181	CT	C	360	PASS	SNX31	CCDS6288.1	r.?	-	-	Del	intronic	D	101632181	101632191	1	15	324.467	-	-	9	1	1	SNX31|CCDS6288.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX31|CCDS6288.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	4	2	23	23	23	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525207	8	102099916	AG	A	360	PASS	-	-	-	-	-	Del	-	D	102099916	102099924	1	15	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	19	2	19	2	0	0	./.	2	4	3	5	26	22	26	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525328	8	102506095	TC	T	478	PASS	GRHL2	CCDS34931.1	r.?	-	-	Del	intronic	D	102506095	102506102	1	28	462.618	-	-	6	1	1	GRHL2|CCDS34931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRHL2|CCDS34931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	6	3	7	24	28	24	28	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525434	8	102773665	AT	A	360	PASS	NCALD	CCDS6292.1	r.?	-	-	Del	intronic	D	102773665	102773674	1	12	320.252	-	-	8	1	1	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	1	7	1	33	18	33	18	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525552	8	103325624	GA	G	300	PASS	UBR5	CCDS34933.1	r.?	-	-	Del	intronic	D	103325624	103325630	1	12	267.379	-	-	5	1	1	UBR5|CCDS34933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBR5|CCDS34933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	3	4	18	25	18	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525746	8	103801967	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	103801967	103801974	1	12	267.379	-	-	6	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	3	2	7	20	7	20	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525819	8	104019796	AAGAG	A	298	PASS	-	-	-	-	-	Del	-	D	104019796	104019804	4	16	324.467	-	-	3	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	5	3	23	24	23	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525845	8	104087136	AT	A	420	PASS	ATP6V1C1	CCDS6296.1	r.?	-	-	Del	downstream	D	104087136	104087146	1	18	378.544	-	-	9	1	1	ATP6V1C1|CCDS6296.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ATP6V1C1|CCDS6296.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	19	4	19	4	0	0	./.	2	5	3	5	22	34	22	34	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525891	8	104172248	CT	C	300	PASS	BAALC	CCDS6297.1	r.?	-	-	Del	intronic	D	104172248	104172258	1	10	270.389	-	-	9	1	1	BAALC|CCDS6297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAALC|CCDS6297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	1	4	2	4	19	25	19	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525919	8	104245237	TA	T	300	PASS	BAALC	CCDS6297.1	r.?	-	-	Del	downstream	D	104245237	104245247	1	10	268.583	-	-	9	1	1	BAALC|CCDS6297.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	BAALC|CCDS6297.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	8	10	8	0	0	./.	1	4	2	6	25	22	25	22	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760525968	8	104391079	C	CA	420	PASS	CTHRC1	CCDS6299.1	r.?	-	-	Ins	intronic	I	104391079	104391088	1	20	374.33	-	-	8	1	1	CTHRC1|CCDS6299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTHRC1|CCDS6299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	5	4	24	22	24	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526074	8	104811378	CA	C	360	PASS	RIMS2	ENST00000504942	r.?	-	-	Del	intronic	D	104811378	104811385	1	15	324.467	-	-	6	1	1	RIMS2|ENST00000504942|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS2|ENST00000504942|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	4	2	4	4	23	21	23	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526087	8	104866097	CT	C	480	PASS	RIMS2	ENST00000507740	r.?	-	-	Del	intronic	D	104866097	104866104	1	25	431.418	-	-	6	1	1	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	4	4	6	5	26	24	26	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526371	8	106002663	AT	A	540	PASS	-	-	-	-	-	Del	-	D	106002663	106002671	1	30	486.7	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	5	4	5	29	22	29	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526398	8	106092604	CT	C	420	PASS	-	-	-	-	-	Del	-	D	106092604	106092612	1	18	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	5	2	5	2	31	2	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526577	8	106722363	TA	T	420	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Del	intronic	D	106722363	106722372	1	14	378.544	-	-	8	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	1	6	2	7	27	37	27	37	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526610	8	106897024	CA	C	600	PASS	-	-	-	-	-	Del	-	D	106897024	106897034	1	35	540.778	-	-	9	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	4	7	4	22	13	22	13	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526753	8	107513368	GT	G	360	PASS	OXR1	CCDS47909.1	r.?	-	-	Del	intronic	D	107513368	107513376	1	16	324.467	-	-	7	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	3	6	3	35	28	35	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526793	8	107629656	CA	C	360	PASS	OXR1	CCDS47909.1	r.?	-	-	Del	intronic	D	107629656	107629666	1	15	324.467	-	-	9	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	5	3	25	28	25	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526796	8	107644837	CT	C	360	PASS	OXR1	CCDS47909.1	r.?	-	-	Del	intronic	D	107644837	107644847	1	15	319.65	-	-	9	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	4	2	5	2	26	19	26	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526813	8	107688816	AT	A	420	PASS	OXR1	CCDS47909.1	r.?	-	-	Del	intronic	D	107688816	107688825	1	14	378.544	-	-	8	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	1	6	1	7	2	27	2	27	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760526982	8	108310863	AT	A	300	PASS	ANGPT1	CCDS6306.1	r.?	-	-	Del	intronic	D	108310863	108310873	1	12	270.389	-	-	9	1	1	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	3	30	12	30	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527028	8	108430383	CT	C	480	PASS	ANGPT1	CCDS6306.1	r.?	-	-	Del	intronic	D	108430383	108430391	1	24	432.622	-	-	7	1	1	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	3	5	5	5	24	32	24	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527128	8	108876055	CT	C	300	PASS	-	-	-	-	-	Del	-	D	108876055	108876064	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	4	3	29	32	29	32	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527176	8	109029253	CT	C	300	PASS	RSPO2	CCDS6307.1	r.?	-	-	Del	intronic	D	109029253	109029263	1	12	270.389	-	-	9	1	-	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	5	17	5	0	0	./.	3	2	4	2	32	24	32	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527256	8	109395437	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	109395437	109395447	1	16	427.806	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	1	9	3	31	17	32	17	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527393	8	109914116	GA	G	300	PASS	-	-	-	-	-	Del	-	D	109914116	109914126	1	12	270.389	-	-	9	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	2	3	2	3	8	11	8	11	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527516	8	110297112	G	GT	480	PASS	NUDCD1	CCDS6312.1	r.?	-	-	Ins	intronic	I	110297112	110297122	1	25	420.581	-	-	9	1	1	NUDCD1|CCDS6312.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUDCD1|CCDS6312.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	4	4	7	8	31	32	31	33	7	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527586	8	110538999	CT	C	480	PASS	PKHD1L1	CCDS47911.1	r.?	-	-	Del	intronic	D	110538999	110539009	1	24	432.622	-	-	9	1	1	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	5	5	5	30	23	30	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527600	8	110578871	GT	G	480	PASS	EBAG9	CCDS6313.1	r.?	-	-	Del	downstream	D	110578871	110578881	1	21	432.622	-	-	9	1	-	EBAG9|CCDS6313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EBAG9|CCDS6313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	15	8	15	0	0	./.	6	2	8	2	31	18	31	18	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527604	8	110595930	G	GC	300	PASS	ENSG00000147642	CCDS47912.1	r.?	-	-	Ins	intronic	I	110595930	110595938	1	10	267.379	-	-	7	1	1	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	18	0	0	./.	4	1	4	1	23	32	23	32	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527786	8	111400878	CT	C	360	PASS	-	-	-	-	-	Del	-	D	111400878	111400886	1	15	324.467	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	2	5	10	19	10	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527857	8	111712067	CT	C	480	PASS	-	-	-	-	-	Del	-	D	111712067	111712075	1	21	432.622	-	-	7	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	2	6	3	6	21	29	21	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527892	8	111834889	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	111834889	111834901	2	12	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	3	4	27	30	27	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760527951	8	112066408	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	112066408	112066417	1	10	267.379	-	-	8	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	1	4	3	4	15	16	15	16	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528069	8	112483042	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	112483042	112483050	1	16	317.844	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	4	3	27	20	27	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528070	8	112488889	GA	G	300	PASS	-	-	-	-	-	Del	-	D	112488889	112488897	1	10	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	1	5	4	24	12	24	12	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528079	8	112539731	AT	A	300	PASS	-	-	-	-	-	Del	-	D	112539731	112539739	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	2	3	11	19	11	19	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528111	8	112701513	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	112701513	112701520	1	10	267.379	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	4	2	25	12	25	12	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528180	8	112948104	CTAAA	C	540	PASS	-	-	-	-	-	Del	-	D	112948104	112948111	4	28	486.7	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	6	5	7	29	34	29	34	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528246	8	113209880	TA	T	434	PASS	-	-	-	-	-	Del	-	D	113209880	113209886	1	30	486.7	-	-	5	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	5	6	9	32	29	32	29	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528269	8	113267910	A	AT	360	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113267910	113267916	1	12	320.854	-	-	5	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	11	22	11	0	0	./.	5	1	6	1	30	18	31	18	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528326	8	113467267	A	AG	360	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113467267	113467268	1	16	320.252	-	-	0	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	6	3	31	23	31	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528344	8	113542365	G	GA	420	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113542365	113542372	1	20	374.33	-	-	6	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	22	11	22	0	0	./.	4	3	5	5	24	13	24	13	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528391	8	113699904	TTA	T	420	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	113699904	113699908	2	8	378.544	-	-	1	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	7	0	9	0	25	0	25	0	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528427	8	113841278	G	GA	300	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113841278	113841288	1	12	262.562	-	-	9	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	3	2	4	2	32	23	32	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528554	8	114512185	CA	C	300	PASS	-	-	-	-	-	Del	-	D	114512185	114512195	1	6	264.97	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	0	5	1	5	19	23	19	23	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528687	8	115036135	GA	G	300	PASS	-	-	-	-	-	Del	-	D	115036135	115036143	1	12	270.389	-	-	7	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	5	5	20	27	20	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528702	8	115138104	TG	T	478	PASS	-	-	-	-	-	Del	-	D	115138104	115138112	1	24	484.894	-	-	7	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	7	2	7	25	31	25	31	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528710	8	115174392	GC	G	300	PASS	-	-	-	-	-	Del	-	D	115174392	115174395	1	12	264.97	-	-	2	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	2	3	3	4	13	20	13	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528717	8	115205908	GA	G	540	PASS	-	-	-	-	-	Del	-	D	115205908	115205917	1	24	486.098	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	2	10	2	34	18	34	18	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528837	8	115619662	AT	A	300	PASS	-	-	-	-	-	Del	-	D	115619662	115619671	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	3	2	3	17	10	17	10	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760528963	8	116109845	GA	G	300	PASS	-	-	-	-	-	Del	-	D	116109845	116109851	1	10	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	2	4	6	26	6	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529045	8	116476676	ACTGT	A	629	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116476676	116476684	4	36	594.856	-	-	1	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	8	3	9	3	25	22	25	22	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529055	8	116506867	AT	A	360	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116506867	116506875	1	16	324.467	-	-	7	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	3	3	3	23	16	23	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529070	8	116554758	GA	G	600	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116554758	116554768	1	35	535.961	-	-	9	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	6	4	7	6	27	18	27	18	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529139	8	116760472	CCTT	C	329	PASS	TRPS1	ENST00000422939	r.?	-	-	Del	intronic	D	116760472	116760480	3	15	324.467	-	-	2	1	1	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	4	3	4	18	11	18	11	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529176	8	116879235	TA	T	360	PASS	-	-	-	-	-	Del	-	D	116879235	116879244	1	15	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	3	5	22	27	22	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529279	8	117287258	C	CA	360	PASS	AF130342.1	ENST00000505156	r.?	-	-	Ins	intronic	I	117287258	117287267	1	7	320.854	-	-	8	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	6	0	8	1	27	20	27	20	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529316	8	117380586	TA	T	267	PASS	-	-	-	-	-	Del	-	D	117380586	117380588	1	15	324.467	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	2	5	27	34	27	34	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529326	8	117432134	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	117432134	117432141	1	21	427.806	-	-	6	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	2	6	2	6	7	29	7	31	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529543	8	118316185	CCTT	C	360	PASS	-	-	-	-	-	Del	-	D	118316185	118316193	3	15	324.467	-	-	2	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	4	4	4	19	14	19	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529577	8	118402582	AT	A	420	PASS	-	-	-	-	-	Del	-	D	118402582	118402592	1	20	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	4	3	5	3	20	23	20	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529590	8	118479878	CCTT	C	478	PASS	-	-	-	-	-	Del	-	D	118479878	118479886	3	28	485.496	-	-	2	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	6	3	6	25	31	25	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529645	8	118697110	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	118697110	118697118	1	12	267.379	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	3	4	3	23	19	23	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529737	8	118964067	GA	G	300	PASS	EXT1	CCDS6324.1	r.?	-	-	Del	intronic	D	118964067	118964077	1	12	270.389	-	-	9	1	1	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	4	7	17	32	17	32	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529783	8	119113604	CT	C	300	PASS	EXT1	CCDS6324.1	r.?	-	-	Del	intronic	D	119113604	119113609	1	10	270.389	-	-	4	1	1	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	1	7	2	24	34	24	34	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529784	8	119115392	CA	C	420	PASS	EXT1	CCDS6324.1	r.?	-	-	Del	intronic	D	119115392	119115402	1	18	378.544	-	-	9	1	1	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	5	2	7	2	23	19	23	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529789	8	119135303	AT	A	329	PASS	-	-	-	-	-	Del	-	D	119135303	119135313	1	16	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	6	6	30	26	30	26	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760529840	8	119278172	CT	C	300	PASS	SAMD12	CCDS47913.1	r.?	-	-	Del	intronic	D	119278172	119278177	1	10	270.389	-	-	4	1	1	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	1	5	1	27	17	27	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760530009	8	119876091	CT	C	269	PASS	-	-	-	-	-	Del	-	D	119876091	119876100	1	12	267.981	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	4	6	34	23	34	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760530127	8	120242583	AG	A	360	PASS	MAL2	ENST00000276681	r.?	-	-	Del	intronic	D	120242583	120242588	1	15	324.467	-	-	4	1	1	MAL2|ENST00000276681|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAL2|ENST00000276681|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	2	5	3	19	26	19	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760530445	8	121128462	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	121128462	121128471	1	16	320.854	-	-	8	1	-	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	3	3	7	4	26	23	27	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760530609	8	121703987	T	TA	300	PASS	SNTB1	CCDS6334.1	r.?	-	-	Ins	intronic	I	121703987	121703997	1	6	267.379	-	-	9	1	1	SNTB1|CCDS6334.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNTB1|CCDS6334.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	15	7	0	0	./.	5	0	6	0	32	17	32	17	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760530656	8	121967650	CT	C	420	PASS	-	-	-	-	-	Del	-	D	121967650	121967658	1	20	378.544	-	-	7	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	4	3	4	6	27	30	27	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760530811	8	122512402	TA	T	540	PASS	-	-	-	-	-	Del	-	D	122512402	122512412	1	24	486.7	-	-	9	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	7	2	8	11	23	11	23	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531015	8	123006879	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	123006879	123006885	1	12	320.854	-	-	5	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	1	5	2	6	19	33	19	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531161	8	123482909	TA	T	480	PASS	-	-	-	-	-	Del	-	D	123482909	123482917	1	21	432.622	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	6	3	7	19	29	19	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531203	8	123678008	CT	C	360	PASS	-	-	-	-	-	Del	-	D	123678008	123678018	1	16	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	3	3	3	5	24	31	24	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531220	8	123737559	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	123737559	123737567	1	16	427.806	-	-	7	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	7	1	7	1	40	31	40	32	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531245	8	123806500	CT	C	360	PASS	ZHX2	CCDS6336.1	r.?	-	-	Del	intronic	D	123806500	123806509	1	15	324.467	-	-	8	1	1	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	7	2	24	26	24	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531247	8	123809219	AG	A	360	PASS	ZHX2	CCDS6336.1	r.?	-	-	Del	intronic	D	123809219	123809225	1	15	324.467	-	-	5	1	1	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	3	4	25	27	25	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531292	8	123945896	TA	T	480	PASS	ZHX2	CCDS6336.1	r.?	-	-	Del	intronic	D	123945896	123945906	1	25	432.622	-	-	9	1	1	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZHX2|CCDS6336.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	4	5	6	31	27	31	27	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531549	8	124612584	TC	T	569	PASS	-	-	-	-	-	Del	-	D	124612584	124612586	1	35	540.176	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	4	8	5	39	29	39	29	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531579	8	124713733	CA	C	269	PASS	ANXA13	CCDS34939.1	r.?	-	-	Del	intronic	D	124713733	124713742	1	10	269.787	-	-	8	1	1	ANXA13|CCDS34939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANXA13|CCDS34939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	4	2	33	16	33	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531650	8	124973327	TA	T	540	PASS	FER1L6	CCDS43767.1	r.?	-	-	Del	intronic	D	124973327	124973336	1	30	483.69	-	-	8	1	1	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	5	5	5	27	23	27	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531728	8	125257842	GA	G	540	PASS	ENSG00000214803	ENST00000399016	r.?	-	-	Del	intronic	D	125257842	125257851	1	28	483.69	-	-	8	1	1	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	6	3	8	3	36	18	36	18	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760531970	8	125855128	GA	G	360	PASS	ENSG00000235517	ENST00000422573	r.?	-	-	Del	intronic	D	125855128	125855136	1	7	324.467	-	-	7	1	1	ENSG00000235517|ENST00000422573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000235517|ENST00000422573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	6	0	6	1	36	21	36	21	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532107	8	126337758	A	AT	300	PASS	NSMCE2	CCDS6356.1	r.?	-	-	Ins	intronic	I	126337758	126337768	1	10	261.96	-	-	9	1	1	NSMCE2|CCDS6356.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NSMCE2|CCDS6356.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	4	1	4	1	30	3	30	3	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532304	8	127068550	C	CGA	300	PASS	-	-	-	-	-	Ins	-	I	127068550	127068560	2	12	264.368	-	-	4	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	3	4	18	20	19	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532608	8	127934262	CT	C	509	PASS	-	-	-	-	-	Del	-	D	127934262	127934272	1	28	486.7	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	6	3	7	16	24	16	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532629	8	127984206	AT	A	300	PASS	-	-	-	-	-	Del	-	D	127984206	127984215	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	2	4	11	16	11	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532695	8	128218108	GA	G	360	PASS	AC020688.1	ENST00000500112	r.?	-	-	Del	downstream	D	128218108	128218116	1	12	324.467	-	-	7	1	1	AC020688.1|ENST00000500112|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC020688.1|ENST00000500112|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	6	11	6	11	0	0	./.	5	1	5	1	26	5	26	5	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532834	8	128652080	AT	A	420	PASS	-	-	-	-	-	Del	-	D	128652080	128652090	1	14	378.544	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	1	7	1	32	25	32	25	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532951	8	128966033	AT	A	300	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128966033	128966042	1	10	270.389	-	-	8	1	-	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	4	1	7	1	24	3	24	3	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532973	8	129025420	AC	A	300	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	129025420	129025428	1	10	270.389	-	-	7	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	1	4	2	4	19	27	19	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760532980	8	129036140	CA	C	360	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	129036140	129036149	1	15	324.467	-	-	8	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	2	5	3	27	26	27	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533008	8	129106445	GT	G	360	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	129106445	129106451	1	7	324.467	-	-	5	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	0	6	0	7	6	34	6	34	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533104	8	129479330	TA	T	480	PASS	-	-	-	-	-	Del	-	D	129479330	129479339	1	16	432.622	-	-	8	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	7	1	7	1	32	23	32	23	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533207	8	129834563	CA	C	300	PASS	-	-	-	-	-	Del	-	D	129834563	129834573	1	12	269.185	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	3	2	5	4	29	31	29	31	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533247	8	129962689	CT	C	300	PASS	-	-	-	-	-	Del	-	D	129962689	129962698	1	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	3	3	35	30	35	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533370	8	130445178	GA	G	300	PASS	AC013300.1	ENST00000446592	r.?	-	-	Del	intronic	D	130445178	130445187	1	6	268.583	-	-	8	1	1	AC013300.1|ENST00000446592|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC013300.1|ENST00000446592|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	0	5	0	5	24	24	24	24	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533645	8	131356521	AT	A	300	PASS	ASAP1	CCDS6362.1	r.?	-	-	Del	intronic	D	131356521	131356531	1	10	270.389	-	-	9	1	1	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	4	1	5	3	23	20	23	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760533798	8	131815663	CA	C	480	PASS	ADCY8	CCDS6363.1	r.?	-	-	Del	intronic	D	131815663	131815669	1	24	429.612	-	-	5	1	1	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	5	4	6	23	35	23	35	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534076	8	132782103	CCT	C	420	PASS	-	-	-	-	-	Del	-	D	132782103	132782118	2	20	374.932	-	-	7	1	-	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	3	5	3	27	21	27	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534134	8	133107392	CT	C	360	PASS	OC90	CCDS47920.1	r.?	-	-	Del	intronic	D	133107392	133107398	1	15	324.467	-	-	5	1	1	OC90|CCDS47920.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OC90|CCDS47920.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	4	2	5	4	24	18	24	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534167	8	133206827	TG	T	540	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Del	intronic	D	133206827	133206834	1	28	486.7	-	-	6	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	3	6	3	8	27	30	27	30	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534259	8	133551937	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	133551937	133551946	1	12	267.379	-	-	8	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	3	2	5	3	36	13	37	13	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534276	8	133582984	CTG	C	300	PASS	LRRC6	CCDS6365.1	r.?	-	-	Del	downstream	D	133582984	133582992	2	12	270.389	-	-	3	1	1	LRRC6|CCDS6365.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LRRC6|CCDS6365.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	5	11	5	0	0	./.	2	3	2	5	23	33	23	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534391	8	134065098	CTT	C	540	PASS	TG	CCDS34944.1	r.?	-	-	Del	intronic	D	134065098	134065102	2	30	486.098	-	-	3	1	1	TG|CCDS34944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TG|CCDS34944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	4	5	4	30	26	30	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760534480	8	134391278	CAAG	C	329	PASS	-	-	-	-	-	Del	-	D	134391278	134391290	3	12	324.467	-	-	3	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	5	2	7	17	20	17	20	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535047	8	136618911	TA	T	300	PASS	KHDRBS3	CCDS6374.1	r.?	-	-	Del	intronic	D	136618911	136618920	1	12	269.787	-	-	8	1	1	KHDRBS3|CCDS6374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KHDRBS3|CCDS6374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	4	4	21	19	21	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535108	8	136842109	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	136842109	136842118	1	20	374.33	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	4	5	29	26	29	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535117	8	136873875	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	136873875	136873885	1	15	319.65	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	4	2	5	4	22	24	22	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535120	8	136876541	TC	T	300	PASS	-	-	-	-	-	Del	-	D	136876541	136876549	1	6	269.185	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	0	6	0	24	13	24	13	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535277	8	137437330	CT	C	480	PASS	-	-	-	-	-	Del	-	D	137437330	137437340	1	21	432.622	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	6	3	7	17	24	17	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535357	8	137744520	CT	C	300	PASS	-	-	-	-	-	Del	-	D	137744520	137744529	1	10	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	1	4	1	5	20	28	20	28	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535375	8	137788105	CT	C	420	PASS	-	-	-	-	-	Del	-	D	137788105	137788114	1	18	378.544	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	5	2	7	4	20	19	20	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535538	8	138307077	GA	G	360	PASS	-	-	-	-	-	Del	-	D	138307077	138307082	1	16	323.865	-	-	4	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	3	3	3	4	14	23	14	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535549	8	138330921	AT	A	360	PASS	-	-	-	-	-	Del	-	D	138330921	138330931	1	15	324.467	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	4	3	6	12	25	12	25	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535604	8	138453328	AT	A	300	PASS	-	-	-	-	-	Del	-	D	138453328	138453338	1	10	269.185	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	4	4	27	18	27	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760535643	8	138586254	TGTAA	T	300	PASS	-	-	-	-	-	Del	-	D	138586254	138586265	4	10	270.389	-	-	2	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	1	4	2	5	17	25	17	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536084	8	139842772	TA	T	540	PASS	COL22A1	CCDS6376.1	r.?	-	-	Del	intronic	D	139842772	139842781	1	30	486.098	-	-	8	1	1	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	5	4	7	7	31	26	31	26	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536118	8	139928197	GA	G	480	PASS	COL22A1	CCDS6376.1	r.?	-	-	Del	upstream	D	139928197	139928207	1	21	427.806	-	-	9	1	1	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	10	15	10	0	0	./.	6	2	7	3	31	20	31	20	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536159	8	140002663	CA	C	360	PASS	-	-	-	-	-	Del	-	D	140002663	140002672	1	16	324.467	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	5	4	30	23	30	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536312	8	140505799	TA	T	300	PASS	-	-	-	-	-	Del	-	D	140505799	140505805	1	12	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	4	17	22	17	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536444	8	140978044	TA	T	360	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	140978044	140978053	1	15	324.467	-	-	8	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	4	2	7	4	28	22	28	22	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536483	8	141100577	TA	T	600	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	141100577	141100584	1	36	540.778	-	-	6	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	5	7	5	35	24	35	24	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536495	8	141151510	AT	A	540	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	141151510	141151518	1	30	486.7	-	-	7	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	9	5	35	27	35	27	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536582	8	141442296	GA	G	300	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	141442296	141442306	1	12	270.389	-	-	9	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	2	3	4	3	25	26	25	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536639	8	141552537	AAAAT	A	269	PASS	EIF2C2	ENST00000220592	r.?	-	-	Del	intronic	D	141552537	141552549	4	12	270.389	-	-	2	1	1	EIF2C2|ENST00000220592|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2C2|ENST00000220592|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	2	3	2	3	19	22	19	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536704	8	141709182	AT	A	300	PASS	PTK2	CCDS6381.1	r.?	-	-	Del	intronic	D	141709182	141709192	1	12	266.174	-	-	9	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	5	3	26	17	26	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536805	8	141981094	CA	C	300	PASS	PTK2	CCDS6381.1	r.?	-	-	Del	intronic	D	141981094	141981102	1	10	270.389	-	-	7	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	2	7	40	36	40	36	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536941	8	142453019	TA	T	480	PASS	ENSG00000184334	ENST00000355850	r.?	-	-	Del	downstream	D	142453019	142453027	1	21	431.418	-	-	7	1	1	ENSG00000184334|ENST00000355850|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000184334|ENST00000355850|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	10	10	10	0	0	./.	2	6	3	7	14	34	14	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760536967	8	142497351	AC	A	300	PASS	-	-	-	-	-	Del	-	D	142497351	142497357	1	6	270.389	-	-	5	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	0	7	0	25	19	25	19	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537155	8	143373322	G	GC	360	PASS	TSNARE1	CCDS6384.1	r.?	-	-	Ins	intronic	I	143373322	143373331	1	15	316.038	-	-	8	1	1	TSNARE1|CCDS6384.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSNARE1|CCDS6384.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	4	3	4	13	27	14	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537163	8	143437845	AG	A	480	PASS	TSNARE1	CCDS6384.1	r.?	-	-	Del	intronic	D	143437845	143437848	1	21	432.622	-	-	2	1	1	TSNARE1|CCDS6384.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSNARE1|CCDS6384.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	6	2	6	2	31	25	31	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537423	8	144240076	AG	A	480	PASS	LY6H	CCDS47926.1	r.?	-	-	Del	intronic	D	144240076	144240084	1	21	430.214	-	-	7	1	1	LY6H|CCDS47926.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LY6H|CCDS47926.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	6	3	8	22	26	22	26	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537502	8	144512623	TG	T	509	PASS	MAFA	CCDS34955.1	r.?	-	-	Del	upstream	D	144512623	144512632	1	28	475.863	-	-	8	1	1	MAFA|CCDS34955.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MAFA|CCDS34955.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	9	8	9	0	0	./.	3	6	4	7	22	24	22	24	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537531	8	144591438	CAAT	C	300	PASS	ZC3H3	CCDS6402.1	r.?	-	-	Del	intronic	D	144591438	144591446	3	12	268.583	-	-	2	1	1	ZC3H3|CCDS6402.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZC3H3|CCDS6402.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	6	3	25	29	25	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537613	8	144825204	TG	T	600	PASS	ENSG00000203499	ENST00000435097	r.?	-	-	Del	intronic	D	144825204	144825212	1	35	537.768	-	-	7	1	1	ENSG00000203499|ENST00000435097|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000203499|ENST00000435097|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	6	4	9	5	32	26	32	26	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537671	8	145003562	TG	T	300	PASS	PLEC	CCDS43772.1	r.?	-	-	Del	intronic	D	145003562	145003571	1	10	270.389	-	-	8	1	1	PLEC|CCDS43772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEC|CCDS43772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	1	6	4	28	27	28	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537713	8	145146512	C	CA	420	PASS	CYC1	CCDS6415.1	r.?	-	-	Ins	upstream	I	145146512	145146520	1	18	374.33	-	-	7	1	1	CYC1|CCDS6415.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CYC1|CCDS6415.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	10	14	10	0	0	./.	5	2	6	4	35	22	35	22	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537791	8	145524281	G	GA	449	PASS	HSF1	CCDS6419.1	r.?	-	-	Ins	intronic	I	145524281	145524288	1	21	427.806	-	-	6	1	1	HSF1|CCDS6419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HSF1|CCDS6419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	2	6	4	29	37	29	37	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537816	8	145621923	GCTT	G	269	PASS	CPSF1	CCDS34966.1	r.2788_2790delAAG	c.2713_2715delAAG	p.K905delK	Del	inframe	D	145621923	145621932	3	10	269.787	-	-	2	1	1	CPSF1|CCDS34966.1|r.2788_2790delAAG|c.2713_2715delAAG|p.K905delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	CPSF1|CCDS34966.1|r.2788_2790delAAG|c.2713_2715delAAG|p.K905delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	4	11	4	11	0	0	./.	4	1	4	1	15	22	15	22	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537819	8	145624023	GTCC	G	267	PASS	CPSF1	CCDS34966.1	r.1716_1718delGGA	c.1641_1643delGGA	p.E547delE	Del	inframe	D	145624023	145624031	3	16	324.467	-	-	2	1	1	CPSF1|CCDS34966.1|r.1716_1718delGGA|c.1641_1643delGGA|p.E547delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	CPSF1|CCDS34966.1|r.1716_1718delGGA|c.1641_1643delGGA|p.E547delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	7	4	7	4	0	0	./.	3	3	3	3	23	26	23	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537822	8	145627691	GT	G	360	PASS	CPSF1	CCDS34966.1	r.?	-	-	Del	intronic	D	145627691	145627701	1	15	324.467	-	-	9	1	-	CPSF1|CCDS34966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPSF1|CCDS34966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	5	6	22	33	22	33	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537903	8	146009022	TA	T	300	PASS	ZNF34	CCDS47945.1	r.?	-	-	Del	intronic	D	146009022	146009030	1	12	270.389	-	-	7	1	1	ZNF34|CCDS47945.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF34|CCDS47945.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	2	3	26	23	26	23	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760537980	8	146239598	A	AT	447	PASS	-	-	-	-	-	Ins	-	I	146239598	146239605	1	30	587.631	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	9	2	10	3	39	20	39	20	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538084	9	277269	AG	A	360	PASS	DOCK8	CCDS6440.1	r.?	-	-	Del	intronic	D	277269	277271	1	16	321.224	-	-	1	1	1	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	3	4	4	22	23	22	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538112	9	335081	CA	C	360	PASS	DOCK8	CCDS6440.1	r.?	-	-	Del	intronic	D	335081	335091	1	12	324.836	-	-	9	1	1	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	1	5	2	5	20	35	20	35	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538126	9	364283	GAAC	G	327	PASS	DOCK8	CCDS6440.1	r.?	-	-	Del	intronic	D	364283	364290	3	20	378.975	-	-	2	1	1	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK8|CCDS6440.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	4	5	4	26	19	26	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538289	9	789310	CA	C	269	PASS	-	-	-	-	-	Del	-	D	789310	789320	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	3	2	6	2	31	18	31	18	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538303	9	806678	CA	C	358	PASS	-	-	-	-	-	Del	-	D	806678	806688	1	18	378.373	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	2	8	3	30	22	30	22	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538376	9	902345	TC	T	329	PASS	DMRT1	CCDS6442.1	r.?	-	-	Del	intronic	D	902345	902347	1	16	318.213	-	-	1	1	1	DMRT1|CCDS6442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMRT1|CCDS6442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	3	4	28	21	28	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538438	9	1043410	A	AT	600	PASS	AL358976.1	ENST00000500181	r.?	-	-	Ins	upstream	I	1043410	1043417	1	35	534.169	-	-	6	1	1	AL358976.1|ENST00000500181|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	AL358976.1|ENST00000500181|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	12	9	12	9	0	0	./.	4	6	4	6	23	27	23	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538462	9	1102691	AC	A	300	PASS	-	-	-	-	-	Del	-	D	1102691	1102699	1	12	270.697	-	-	7	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	2	4	31	26	31	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538526	9	1283915	CA	C	360	PASS	-	-	-	-	-	Del	-	D	1283915	1283917	1	15	324.836	-	-	1	1	-	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	4	4	4	22	26	22	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538539	9	1322532	AT	A	300	PASS	-	-	-	-	-	Del	-	D	1322532	1322542	1	10	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	1	34	17	34	17	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538550	9	1400749	GT	G	480	PASS	-	-	-	-	-	Del	-	D	1400749	1400759	1	24	433.115	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	6	3	24	25	24	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538597	9	1593143	CT	C	300	PASS	-	-	-	-	-	Del	-	D	1593143	1593153	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	2	3	3	3	21	33	21	33	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538658	9	1834458	CA	C	397	PASS	-	-	-	-	-	Del	-	D	1834458	1834466	1	20	378.975	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	4	6	4	19	35	19	35	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538748	9	2220967	CT	C	540	PASS	-	-	-	-	-	Del	-	D	2220967	2220969	1	30	487.254	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	5	4	6	16	28	16	28	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538978	9	2890118	TA	T	300	PASS	-	-	-	-	-	Del	-	D	2890118	2890127	1	12	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	3	2	13	15	13	15	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760538982	9	2906202	CT	C	300	PASS	-	-	-	-	-	Del	-	D	2906202	2906212	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	2	3	17	23	17	23	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539025	9	3107492	T	TA	350	PASS	-	-	-	-	-	Ins	-	I	3107492	3107498	1	20	374.761	-	-	5	1	1	-	-	./.	0	0	0	0	12	14	13	14	0	0	./.	4	3	5	3	27	28	28	28	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539085	9	3301638	TA	T	480	PASS	RFX3	CCDS6449.1	r.?	-	-	Del	intronic	D	3301638	3301646	1	24	433.115	-	-	7	1	1	RFX3|CCDS6449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX3|CCDS6449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	3	7	5	19	21	19	21	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539262	9	3938531	TA	T	300	PASS	GLIS3	CCDS6451.1	r.?	-	-	Del	intronic	D	3938531	3938541	1	12	270.697	-	-	9	1	1	GLIS3|CCDS6451.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLIS3|CCDS6451.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	2	4	2	24	21	24	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539351	9	4235716	GA	G	480	PASS	GLIS3	CCDS43784.1	r.?	-	-	Del	intronic	D	4235716	4235726	1	16	432.513	-	-	9	1	1	GLIS3|CCDS43784.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLIS3|CCDS43784.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	7	1	8	3	31	31	31	31	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539372	9	4278105	CA	C	420	PASS	GLIS3	CCDS43784.1	r.?	-	-	Del	intronic	D	4278105	4278114	1	18	378.373	-	-	8	1	1	GLIS3|CCDS43784.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLIS3|CCDS43784.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	5	2	7	3	24	12	24	12	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539447	9	4482793	GA	G	480	PASS	-	-	-	-	-	Del	-	D	4482793	4482801	1	25	433.115	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	4	5	5	30	25	30	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539693	9	5322526	C	CT	274	PASS	-	-	-	-	-	Ins	-	I	5322526	5322535	1	16	321.224	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	3	4	3	26	26	26	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539716	9	5439304	CT	C	398	PASS	C9orf46	CCDS6463.1	r.?	-	-	Del	upstream	D	5439304	5439313	1	18	376.567	-	-	8	1	1	C9orf46|CCDS6463.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C9orf46|CCDS6463.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	4	12	4	12	0	0	./.	2	5	3	6	20	30	20	30	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539856	9	5968043	CT	C	420	PASS	KIAA2026	CCDS47950.1	r.2403delA	c.2187delA	p.A730fs*26	Del	frameshift	D	5968043	5968053	1	20	377.771	-	-	9	1	1	KIAA2026|CCDS47950.1|r.2403delA|c.2187delA|p.A730fs*26|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	KIAA2026|CCDS47950.1|r.2403delA|c.2187delA|p.A730fs*26|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	11	10	11	0	0	./.	3	4	3	4	24	23	24	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760539950	9	6347375	A	AT	351	PASS	-	-	-	-	-	Ins	-	I	6347375	6347383	1	8	374.159	-	-	7	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	7	0	8	0	29	0	29	0	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540153	9	6758406	CG	C	300	PASS	KDM4C	CCDS6471.1	r.?	-	-	Del	intronic	D	6758406	6758412	1	12	270.697	-	-	5	1	1	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	3	5	4	35	23	35	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540293	9	7090502	TA	T	360	PASS	KDM4C	CCDS6471.1	r.?	-	-	Del	intronic	D	7090502	7090512	1	12	324.836	-	-	9	1	1	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	5	1	6	2	36	22	36	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540466	9	7749723	GA	G	420	PASS	-	-	-	-	-	Del	-	D	7749723	7749733	1	20	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	3	4	3	4	25	23	25	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540490	9	7848107	GA	G	360	PASS	-	-	-	-	-	Del	-	D	7848107	7848116	1	16	324.234	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	5	4	26	22	26	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540609	9	8266164	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	8266164	8266167	1	16	321.224	-	-	2	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	3	3	6	28	28	28	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540622	9	8308865	GGA	G	540	PASS	-	-	-	-	-	Del	-	D	8308865	8308877	2	30	486.05	-	-	5	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	5	6	6	27	17	27	17	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540654	9	8428664	CA	C	600	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8428664	8428673	1	35	538.985	-	-	8	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	6	4	6	20	24	20	24	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540668	9	8500189	CA	C	360	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8500189	8500195	1	12	324.836	-	-	5	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	1	5	3	7	11	30	11	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540793	9	8899131	T	TA	420	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	8899131	8899140	1	20	371.149	-	-	8	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	4	3	4	3	24	16	24	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760540824	9	8954309	TA	T	540	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8954309	8954317	1	30	486.05	-	-	7	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	4	5	5	35	35	35	35	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541054	9	9773848	GA	G	360	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9773848	9773858	1	16	324.836	-	-	9	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	3	5	27	30	27	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541087	9	9871829	TG	T	480	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9871829	9871836	1	25	431.911	-	-	6	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	4	4	5	4	30	29	30	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541219	9	10317614	G	GT	300	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	10317614	10317620	1	10	267.084	-	-	5	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	1	4	1	5	2	15	2	15	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541283	9	10571262	G	GA	300	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	10571262	10571268	1	12	267.686	-	-	5	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	16	7	17	0	0	./.	2	3	2	3	13	8	13	8	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541586	9	11653061	CT	C	360	PASS	-	-	-	-	-	Del	-	D	11653061	11653071	1	15	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	5	16	33	16	33	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541634	9	11810102	GT	G	420	PASS	-	-	-	-	-	Del	-	D	11810102	11810112	1	18	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	5	2	5	4	28	16	28	16	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541674	9	11884799	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	11884799	11884807	1	18	374.761	-	-	7	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	2	7	3	27	15	28	17	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541872	9	12554790	GA	G	420	PASS	-	-	-	-	-	Del	-	D	12554790	12554799	1	20	378.975	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	3	5	22	14	22	14	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541934	9	12702410	TACAA	T	269	PASS	TYRP1	CCDS34990.1	r.1183_1186delACAA	c.1054_1057delACAA	p.N353fs*31	Del	frameshift	D	12702410	12702418	4	12	270.697	-	-	1	1	1	TYRP1|CCDS34990.1|r.1183_1186delACAA|c.1054_1057delACAA|p.N353fs*31|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TYRP1|CCDS34990.1|r.1183_1186delACAA|c.1054_1057delACAA|p.N353fs*31|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	4	13	4	13	0	0	./.	2	3	3	5	10	20	10	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760541955	9	12733576	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	12733576	12733585	1	27	535.373	-	-	8	1	1	-	-	./.	0	0	0	0	20	11	21	12	0	0	./.	2	8	2	11	17	42	17	42	2	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542128	9	13282857	AT	A	300	PASS	-	-	-	-	-	Del	-	D	13282857	13282864	1	10	270.697	-	-	6	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	1	4	1	4	12	28	12	28	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542181	9	13571641	TG	T	360	PASS	-	-	-	-	-	Del	-	D	13571641	13571648	1	15	323.632	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	2	6	22	26	22	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542321	9	14043590	TA	T	300	PASS	-	-	-	-	-	Del	-	D	14043590	14043595	1	6	270.697	-	-	4	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	0	5	0	6	8	26	8	26	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542361	9	14209505	AG	A	300	PASS	NFIB	CCDS6474.1	r.?	-	-	Del	intronic	D	14209505	14209511	1	10	270.697	-	-	5	1	1	NFIB|CCDS6474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFIB|CCDS6474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	5	4	24	23	24	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542387	9	14303546	TA	T	360	PASS	NFIB	CCDS6474.1	r.?	-	-	Del	intronic	D	14303546	14303554	1	12	324.836	-	-	7	1	1	NFIB|CCDS6474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFIB|CCDS6474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	1	9	2	35	18	35	18	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542398	9	14334659	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	14334659	14334668	1	12	321.224	-	-	8	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	5	1	5	2	26	24	26	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542426	9	14396546	GA	G	720	PASS	-	-	-	-	-	Del	-	D	14396546	14396556	1	45	649.07	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	8	4	11	6	47	18	47	18	11	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542583	9	14955920	AT	A	300	PASS	-	-	-	-	-	Del	-	D	14955920	14955928	1	12	270.697	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	2	5	4	22	20	22	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542585	9	14965286	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	14965286	14965294	1	15	321.224	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	2	5	25	22	25	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542662	9	15201755	C	CG	300	PASS	TTC39B	CCDS6477.1	r.?	-	-	Ins	intronic	I	15201755	15201762	1	10	266.482	-	-	6	1	1	TTC39B|CCDS6477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC39B|CCDS6477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	1	4	4	4	35	30	36	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760542858	9	15717154	TG	T	300	PASS	C9orf93	CCDS6481.1	r.?	-	-	Del	intronic	D	15717154	15717161	1	12	268.289	-	-	6	1	1	C9orf93|CCDS6481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf93|CCDS6481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	4	3	21	27	21	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543064	9	16396998	CA	C	629	PASS	-	-	-	-	-	Del	-	D	16396998	16397008	1	40	593.727	-	-	9	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	4	7	5	9	18	28	18	28	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543111	9	16578422	G	GT	420	PASS	BNC2	CCDS6482.2	r.?	-	-	Ins	intronic	I	16578422	16578431	1	20	374.761	-	-	8	1	1	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	4	3	4	3	18	12	19	12	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543152	9	16687365	CA	C	300	PASS	BNC2	CCDS6482.2	r.?	-	-	Del	intronic	D	16687365	16687372	1	10	270.697	-	-	6	1	1	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	5	1	30	11	30	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543228	9	16790006	AT	A	300	PASS	BNC2	CCDS6482.2	r.?	-	-	Del	intronic	D	16790006	16790016	1	12	270.697	-	-	9	1	1	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	3	2	20	20	20	20	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543272	9	16867808	C	CA	480	PASS	BNC2	CCDS6482.2	r.?	-	-	Ins	intronic	I	16867808	16867816	1	21	428.298	-	-	7	1	1	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	17	0	0	./.	6	2	6	3	27	27	27	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543390	9	17268450	TG	T	300	PASS	CNTLN	CCDS43789.1	r.?	-	-	Del	intronic	D	17268450	17268457	1	10	270.697	-	-	6	1	1	CNTLN|CCDS43789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTLN|CCDS43789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	4	4	17	30	17	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543615	9	18184422	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	18184422	18184432	1	25	428.298	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	4	6	6	34	27	35	27	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543619	9	18205476	GA	G	360	PASS	-	-	-	-	-	Del	-	D	18205476	18205486	1	16	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	3	3	3	26	8	26	8	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543728	9	18659391	TA	T	300	PASS	ADAMTSL1	CCDS47954.1	r.?	-	-	Del	intronic	D	18659391	18659398	1	10	270.697	-	-	6	1	1	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	2	5	19	27	19	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543866	9	19091657	TA	T	360	PASS	HAUS6	CCDS6489.1	r.?	-	-	Del	intronic	D	19091657	19091667	1	16	311.591	-	-	9	1	1	HAUS6|CCDS6489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HAUS6|CCDS6489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	3	3	5	3	19	14	19	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543935	9	19189125	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	19189125	19189134	2	15	324.836	-	-	4	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	4	4	27	23	27	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760543963	9	19227824	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	19227824	19227833	1	6	256.849	-	-	8	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	0	5	0	10	0	28	0	28	0	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544053	9	19494633	GT	G	300	PASS	-	-	-	-	-	Del	-	D	19494633	19494642	1	10	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	3	4	29	35	29	35	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544147	9	19814806	TA	T	540	PASS	-	-	-	-	-	Del	-	D	19814806	19814813	1	28	485.448	-	-	6	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	3	6	3	9	25	35	25	35	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544397	9	20814253	AT	A	300	PASS	KIAA1797	CCDS34993.1	r.?	-	-	Del	intronic	D	20814253	20814261	1	10	270.697	-	-	7	1	1	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	1	4	3	5	27	26	27	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544441	9	20993167	C	CAT	600	PASS	KIAA1797	CCDS34993.1	r.?	-	-	Ins	intronic	I	20993167	20993177	2	35	529.352	-	-	4	1	1	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	6	5	6	35	26	35	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544452	9	21029652	TATC	T	540	PASS	PTPLAD2	CCDS43791.1	r.?	-	-	Del	intronic	D	21029652	21029658	3	28	487.254	-	-	1	1	1	PTPLAD2|CCDS43791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPLAD2|CCDS43791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	6	5	6	26	28	26	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544512	9	21495333	CA	C	677	PASS	-	-	-	-	-	Del	-	D	21495333	21495343	1	48	638.835	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	7	5	8	9	33	27	33	27	8	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544676	9	22150696	CA	C	337	PASS	-	-	-	-	-	Del	-	D	22150696	22150705	1	16	324.836	-	-	8	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	3	3	3	4	23	25	23	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544744	9	22414164	CA	C	420	PASS	-	-	-	-	-	Del	-	D	22414164	22414171	1	20	378.975	-	-	6	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	3	7	3	21	22	21	22	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544782	9	22604507	AG	A	300	PASS	-	-	-	-	-	Del	-	D	22604507	22604512	1	12	270.697	-	-	4	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	2	3	3	4	27	27	27	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760544846	9	22799997	TA	T	660	PASS	-	-	-	-	-	Del	-	D	22799997	22800006	1	36	595.533	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	8	3	10	3	39	11	39	11	10	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545190	9	24305796	GA	G	420	PASS	-	-	-	-	-	Del	-	D	24305796	24305806	1	14	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	21	6	21	6	0	0	./.	6	1	8	1	24	4	24	4	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545192	9	24309471	CT	C	314	PASS	-	-	-	-	-	Del	-	D	24309471	24309479	1	15	324.836	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	2	5	4	36	26	36	26	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545206	9	24428867	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	24428867	24428876	1	14	374.761	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	1	6	1	26	16	26	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545234	9	24527213	GA	G	600	PASS	-	-	-	-	-	Del	-	D	24527213	24527218	1	35	541.394	-	-	4	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	6	4	7	9	33	9	33	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545266	9	24617488	CA	C	420	PASS	-	-	-	-	-	Del	-	D	24617488	24617497	1	18	378.975	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	2	7	2	22	18	22	18	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545482	9	25532934	GA	G	420	PASS	-	-	-	-	-	Del	-	D	25532934	25532944	1	20	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	5	5	43	34	43	34	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545693	9	26313695	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	26313695	26313704	1	20	373.557	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	17	16	0	0	./.	4	3	4	6	31	38	31	38	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545748	9	26563615	G	GCA	540	PASS	-	-	-	-	-	Ins	-	I	26563615	26563628	2	30	474.611	-	-	6	1	-	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	5	5	5	19	32	19	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545845	9	26820951	TA	T	290	PASS	-	-	-	-	-	Del	-	D	26820951	26820961	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	4	3	18	23	18	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545896	9	26953184	GT	G	540	PASS	IFT74	CCDS43793.1	r.?	-	-	Del	intronic	D	26953184	26953192	1	24	487.254	-	-	7	1	1	IFT74|CCDS43793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IFT74|CCDS43793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	7	2	9	21	40	21	40	2	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760545985	9	27207749	CT	C	300	PASS	TEK	CCDS6519.1	r.?	-	-	Del	intronic	D	27207749	27207759	1	10	270.697	-	-	9	1	1	TEK|CCDS6519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEK|CCDS6519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	3	5	25	22	25	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546024	9	27340600	C	CT	509	PASS	MOBKL2B	CCDS6520.1	r.?	-	-	Ins	intronic	I	27340600	27340610	1	28	464.376	-	-	9	1	1	MOBKL2B|CCDS6520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MOBKL2B|CCDS6520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	3	6	5	8	35	26	35	26	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546140	9	27781849	CT	C	420	PASS	-	-	-	-	-	Del	-	D	27781849	27781859	1	20	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	3	5	4	30	24	30	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546286	9	28246629	AC	A	360	PASS	LINGO2	CCDS6524.1	r.?	-	-	Del	intronic	D	28246629	28246633	1	16	324.836	-	-	3	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	4	4	23	34	23	34	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546368	9	28456069	AT	A	420	PASS	LINGO2	CCDS6524.1	r.?	-	-	Del	intronic	D	28456069	28456076	1	18	378.975	-	-	6	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	5	3	7	24	37	24	37	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546422	9	28643308	CA	C	360	PASS	LINGO2	CCDS6524.1	r.?	-	-	Del	intronic	D	28643308	28643315	1	15	324.836	-	-	6	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	4	2	4	3	31	13	31	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546641	9	29231462	AT	A	660	PASS	-	-	-	-	-	Del	-	D	29231462	29231470	1	42	595.533	-	-	7	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	5	7	6	20	21	20	21	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546660	9	29290983	CA	C	420	PASS	-	-	-	-	-	Del	-	D	29290983	29290988	1	18	376.567	-	-	4	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	5	3	7	28	24	28	24	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760546843	9	29870290	CT	C	300	PASS	-	-	-	-	-	Del	-	D	29870290	29870299	1	12	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	4	3	25	24	25	24	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760547460	9	32204812	TA	T	420	PASS	-	-	-	-	-	Del	-	D	32204812	32204822	1	18	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	5	3	6	16	33	16	33	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760547794	9	33152871	CA	C	360	PASS	B4GALT1	CCDS6535.1	r.?	-	-	Del	intronic	D	33152871	33152881	1	15	324.836	-	-	9	1	1	B4GALT1|CCDS6535.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	B4GALT1|CCDS6535.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	2	6	2	33	15	33	15	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548200	9	34096442	CA	C	360	PASS	DCAF12	CCDS6549.1	r.?	-	-	Del	intronic	D	34096442	34096451	1	12	324.836	-	-	8	1	1	DCAF12|CCDS6549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF12|CCDS6549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	1	5	4	7	25	22	25	22	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548288	9	34219519	A	AT	300	PASS	UBAP1	CCDS6550.1	r.?	-	-	Ins	intronic	I	34219519	34219526	1	6	267.686	-	-	6	1	1	UBAP1|CCDS6550.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	UBAP1|CCDS6550.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	0	5	1	8	5	21	5	24	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548318	9	34277052	TC	T	360	PASS	KIF24	CCDS6551.2	r.?	-	-	Del	intronic	D	34277052	34277054	1	15	324.836	-	-	1	1	1	KIF24|CCDS6551.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF24|CCDS6551.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	2	5	15	25	15	25	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548363	9	34349796	TA	T	420	PASS	-	-	-	-	-	Del	-	D	34349796	34349806	1	18	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	5	6	20	30	20	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548431	9	34559756	TG	T	360	PASS	CNTFR	CCDS6558.1	r.?	-	-	Del	intronic	D	34559756	34559762	1	12	316.407	-	-	5	1	1	CNTFR|CCDS6558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTFR|CCDS6558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	1	5	2	6	20	19	20	19	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548459	9	34681437	TC	T	300	PASS	-	-	-	-	-	Del	-	D	34681437	34681446	1	12	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	5	2	33	36	33	36	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548599	9	35030938	AT	A	787	PASS	C9orf131	ENST00000378745	r.?	-	-	Del	intronic	D	35030938	35030948	1	48	756.145	-	-	9	1	1	C9orf131|ENST00000378745|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf131|ENST00000378745|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	11	3	13	5	36	21	36	21	13	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548607	9	35049043	C	CA	480	PASS	C9orf131	CCDS6572.2	r.?	-	-	Ins	downstream	I	35049043	35049051	1	9	425.89	-	-	7	1	-	C9orf131|CCDS6572.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C9orf131|CCDS6572.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	22	7	22	0	0	./.	0	8	3	10	27	38	28	38	3	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548721	9	35454735	GA	G	480	PASS	-	-	-	-	-	Del	-	D	35454735	35454745	1	16	432.513	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	1	7	4	8	17	36	17	36	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548723	9	35456175	CT	C	360	PASS	-	-	-	-	-	Del	-	D	35456175	35456184	1	15	324.836	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	2	7	3	33	25	33	25	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548763	9	35570035	TAG	T	360	PASS	-	-	-	-	-	Del	-	D	35570035	35570038	2	15	324.836	-	-	1	1	1	-	-	./.	0	0	0	0	20	8	20	8	0	0	./.	4	2	5	3	25	25	25	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548858	9	35849520	CT	C	420	PASS	TMEM8B	CCDS43800.1	r.?	-	-	Del	intronic	D	35849520	35849528	1	18	378.975	-	-	7	1	1	TMEM8B|CCDS43800.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM8B|CCDS43800.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	2	5	2	8	20	38	20	38	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760548897	9	35947872	TA	T	540	PASS	-	-	-	-	-	Del	-	D	35947872	35947881	1	24	486.652	-	-	8	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	7	2	9	3	24	27	24	27	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549114	9	36422066	TA	T	360	PASS	-	-	-	-	-	Del	-	D	36422066	36422072	1	15	322.428	-	-	5	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	4	2	30	18	30	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549172	9	36538620	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	36538620	36538630	1	12	267.686	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	5	3	23	25	23	26	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549326	9	36961798	TAC	T	420	PASS	PAX5	CCDS6607.1	r.?	-	-	Del	intronic	D	36961798	36961811	2	18	378.975	-	-	6	1	-	PAX5|CCDS6607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAX5|CCDS6607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	2	5	5	5	26	24	26	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549421	9	37331155	GT	G	420	PASS	ZCCHC7	CCDS6608.2	r.?	-	-	Del	intronic	D	37331155	37331163	1	20	378.975	-	-	7	1	1	ZCCHC7|CCDS6608.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC7|CCDS6608.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	3	5	3	22	12	22	12	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549465	9	37432380	TA	T	540	PASS	GRHPR	CCDS6609.1	r.?	-	-	Del	intronic	D	37432380	37432390	1	30	487.254	-	-	9	1	1	GRHPR|CCDS6609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRHPR|CCDS6609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	4	5	4	24	25	24	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549485	9	37505412	GA	G	389	PASS	POLR1E	CCDS6611.1	r.?	-	-	Del	downstream	D	37505412	37505419	1	18	375.965	-	-	6	1	1	POLR1E|CCDS6611.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	POLR1E|CCDS6611.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	8	9	8	0	0	./.	2	5	2	6	20	23	20	23	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549549	9	37733707	GT	G	600	PASS	FRMPD1	CCDS6612.1	r.?	-	-	Del	intronic	D	37733707	37733717	1	35	541.394	-	-	9	1	1	FRMPD1|CCDS6612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD1|CCDS6612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	6	4	7	4	29	25	29	25	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549552	9	37738742	TG	T	269	PASS	FRMPD1	CCDS6612.1	r.?	-	-	Del	intronic	D	37738742	37738750	1	10	270.697	-	-	7	1	1	FRMPD1|CCDS6612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD1|CCDS6612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	2	23	31	23	31	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760549625	9	37959985	GA	G	480	PASS	SHB	CCDS43806.1	r.?	-	-	Del	intronic	D	37959985	37959995	1	21	431.309	-	-	9	1	1	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	6	2	7	2	39	35	39	35	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760550182	9	43512737	GT	G	314	PASS	-	-	-	-	-	Del	-	D	43512737	43512745	1	16	324.836	-	-	7	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	5	3	40	24	40	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760550402	9	44836941	TC	T	389	PASS	-	-	-	-	-	Del	-	D	44836941	44836948	1	18	372.353	-	-	6	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	5	2	5	5	26	25	26	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760552891	9	71044309	CA	C	360	PASS	PGM5	CCDS6622.2	r.?	-	-	Del	intronic	D	71044309	71044317	1	15	324.836	-	-	7	1	1	PGM5|CCDS6622.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGM5|CCDS6622.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	2	4	4	5	22	28	22	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553062	9	71633334	C	CT	300	PASS	PRKACG	CCDS6625.1	r.?	-	-	Ins	upstream	I	71633334	71633344	1	12	267.686	-	-	9	1	1	PRKACG|CCDS6625.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PRKACG|CCDS6625.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	13	13	13	0	0	./.	2	3	4	4	16	41	16	41	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553272	9	72000481	CTGTT	C	329	PASS	FAM189A2	CCDS6629.1	r.?	-	-	Del	intronic	D	72000481	72000495	4	15	324.836	-	-	3	1	1	FAM189A2|CCDS6629.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM189A2|CCDS6629.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	2	4	4	4	20	26	20	26	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553315	9	72206846	GA	G	300	PASS	APBA1	CCDS6630.1	r.?	-	-	Del	intronic	D	72206846	72206854	1	10	270.697	-	-	7	1	1	APBA1|CCDS6630.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APBA1|CCDS6630.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	1	4	1	5	23	26	23	26	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553386	9	72422123	AC	A	360	PASS	-	-	-	-	-	Del	-	D	72422123	72422127	1	16	324.836	-	-	3	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	3	3	5	19	29	19	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553413	9	72485168	GA	G	300	PASS	C9orf135	CCDS35041.1	r.?	-	-	Del	intronic	D	72485168	72485177	1	12	269.493	-	-	8	1	1	C9orf135|CCDS35041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf135|CCDS35041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	3	14	8	14	8	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553588	9	73026585	CA	C	269	PASS	KLF9	CCDS6633.1	r.?	-	-	Del	intronic	D	73026585	73026587	1	12	270.697	-	-	1	1	1	KLF9|CCDS6633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLF9|CCDS6633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	3	2	37	37	37	37	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553604	9	73092401	CT	C	360	PASS	-	-	-	-	-	Del	-	D	73092401	73092409	1	15	324.234	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	5	5	24	29	24	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553644	9	73202786	CA	C	300	PASS	TRPM3	CCDS43835.1	r.?	-	-	Del	intronic	D	73202786	73202789	1	12	265.278	-	-	2	1	1	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	4	3	30	22	30	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760553880	9	74016986	G	GA	360	PASS	TRPM3	ENST00000357533	r.?	-	-	Ins	intronic	I	74016986	74016994	1	16	313.999	-	-	7	1	1	TRPM3|ENST00000357533|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPM3|ENST00000357533|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	3	3	4	4	30	24	30	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554067	9	74527130	AT	A	540	PASS	FAM108B1	CCDS35043.1	r.?	-	-	Del	upstream	D	74527130	74527140	1	30	486.652	-	-	9	1	1	FAM108B1|CCDS35043.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C9orf85|CCDS6639.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	5	5	7	39	26	39	26	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554219	9	74885462	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	74885462	74885469	1	6	265.278	-	-	6	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	0	5	2	22	10	23	10	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554353	9	75197982	CA	C	300	PASS	TMC1	CCDS6643.1	r.?	-	-	Del	intronic	D	75197982	75197990	1	12	270.697	-	-	7	1	1	TMC1|CCDS6643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMC1|CCDS6643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	4	2	22	31	22	31	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554380	9	75247634	CA	C	360	PASS	TMC1	CCDS6643.1	r.?	-	-	Del	intronic	D	75247634	75247644	1	12	320.622	-	-	9	1	1	TMC1|CCDS6643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMC1|CCDS6643.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	1	5	2	5	8	24	8	24	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554416	9	75362048	AT	A	420	PASS	TMC1	CCDS6643.1	r.?	-	-	Del	intronic	D	75362048	75362057	1	18	378.975	-	-	8	1	1	TMC1|CCDS6643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMC1|CCDS6643.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	2	5	3	6	29	22	29	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554435	9	75460040	TA	T	300	PASS	-	-	-	-	-	Del	-	D	75460040	75460050	1	10	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	1	4	2	6	19	30	19	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554460	9	75589136	CA	C	480	PASS	ALDH1A1	ENST00000419959	r.?	-	-	Del	intronic	D	75589136	75589142	1	24	433.115	-	-	5	1	1	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	5	3	5	4	27	25	27	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554507	9	75764867	CT	C	420	PASS	ANXA1	CCDS6645.1	r.?	-	-	Del	upstream	D	75764867	75764877	1	18	378.975	-	-	9	1	1	ANXA1|CCDS6645.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ANXA1|CCDS6645.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	17	12	17	0	0	./.	2	5	3	9	15	35	15	35	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554577	9	76064973	CT	C	360	PASS	-	-	-	-	-	Del	-	D	76064973	76064983	1	15	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	2	5	3	25	17	25	17	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554671	9	76455654	TG	T	360	PASS	-	-	-	-	-	Del	-	D	76455654	76455661	1	16	324.836	-	-	6	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	3	3	3	5	31	19	31	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554789	9	76821597	A	AT	629	PASS	-	-	-	-	-	Ins	-	I	76821597	76821603	1	42	588.91	-	-	5	1	1	-	-	./.	0	0	0	0	16	12	18	12	0	0	./.	6	5	8	5	32	31	32	31	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554827	9	76921888	TA	T	480	PASS	-	-	-	-	-	Del	-	D	76921888	76921896	1	24	433.115	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	5	4	6	30	30	30	30	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554965	9	77440021	GA	G	300	PASS	TRPM6	CCDS6647.1	r.?	-	-	Del	intronic	D	77440021	77440029	1	10	270.697	-	-	7	1	1	TRPM6|CCDS6647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM6|CCDS6647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	3	6	25	28	25	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760554970	9	77445213	GA	G	269	PASS	TRPM6	CCDS6647.1	r.?	-	-	Del	intronic	D	77445213	77445223	1	12	270.697	-	-	9	1	1	TRPM6|CCDS6647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM6|CCDS6647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	20	4	20	0	0	./.	2	3	2	3	25	25	25	25	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555025	9	77538617	GA	G	269	PASS	-	-	-	-	-	Del	-	D	77538617	77538627	1	12	263.472	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	3	2	4	5	26	24	26	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555151	9	77869880	G	GT	447	PASS	-	-	-	-	-	Ins	-	I	77869880	77869886	1	30	481.836	-	-	5	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	5	4	6	5	40	24	40	24	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555312	9	78547257	C	CT	300	PASS	PCSK5	CCDS6652.1	r.?	-	-	Ins	intronic	I	78547257	78547266	1	12	267.686	-	-	8	1	1	PCSK5|CCDS6652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCSK5|CCDS6652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	3	44	38	44	38	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555368	9	78715983	AT	A	420	PASS	PCSK5	CCDS6652.1	r.?	-	-	Del	intronic	D	78715983	78715993	1	18	378.975	-	-	9	1	1	PCSK5|CCDS6652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCSK5|CCDS6652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	2	6	3	37	31	37	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555494	9	78982842	TG	T	257	PASS	-	-	-	-	-	Del	-	D	78982842	78982850	1	12	259.258	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	2	3	3	11	20	12	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555559	9	79127199	T	TC	420	PASS	GCNT1	CCDS6653.1	r.?	-	-	Ins	downstream	I	79127199	79127208	1	18	374.761	-	-	8	1	1	GCNT1|CCDS6653.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GCNT1|CCDS6653.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	7	16	7	0	0	./.	5	2	5	2	39	23	39	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555753	9	79762346	TA	T	420	PASS	-	-	-	-	-	Del	-	D	79762346	79762355	1	18	378.975	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	5	4	5	32	35	32	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555766	9	79794651	CTT	C	300	PASS	VPS13A	CCDS6655.1	r.?	-	-	Del	intronic	D	79794651	79794656	2	6	268.289	-	-	4	1	1	VPS13A|CCDS6655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13A|CCDS6655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	7	3	19	10	19	10	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760555983	9	80412958	CT	C	300	PASS	GNAQ	CCDS6658.1	r.?	-	-	Del	intronic	D	80412958	80412967	1	6	268.891	-	-	8	1	-	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	0	5	0	6	10	32	10	32	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556085	9	80784042	AC	A	720	PASS	-	-	-	-	-	Del	-	D	80784042	80784048	1	48	644.254	-	-	5	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	5	7	7	9	30	33	30	33	7	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556169	9	81064619	T	TC	298	PASS	-	-	-	-	-	Ins	-	I	81064619	81064628	1	15	321.224	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	2	5	3	14	27	14	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556179	9	81098650	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	81098650	81098654	2	16	324.836	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	3	3	4	26	10	26	10	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556217	9	81213322	TA	T	300	PASS	-	-	-	-	-	Del	-	D	81213322	81213332	1	6	269.493	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	0	5	0	6	2	35	2	35	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556399	9	82004637	GT	G	300	PASS	-	-	-	-	-	Del	-	D	82004637	82004642	1	10	270.095	-	-	4	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	2	6	19	38	19	38	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556431	9	82236119	AT	A	360	PASS	TLE4	CCDS43837.1	r.?	-	-	Del	intronic	D	82236119	82236126	1	16	324.836	-	-	6	1	1	TLE4|CCDS43837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLE4|CCDS43837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	3	4	3	28	22	28	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556442	9	82256703	AG	A	300	PASS	TLE4	CCDS43837.1	r.?	-	-	Del	intronic	D	82256703	82256708	1	12	270.697	-	-	4	1	1	TLE4|CCDS43837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLE4|CCDS43837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	3	3	13	18	13	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556542	9	82637682	CT	C	420	PASS	-	-	-	-	-	Del	-	D	82637682	82637688	1	20	378.975	-	-	5	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	3	4	5	26	32	26	32	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556544	9	82647977	TG	T	300	PASS	-	-	-	-	-	Del	-	D	82647977	82647981	1	10	270.697	-	-	3	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	2	8	24	33	24	33	2	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556670	9	83031063	AT	A	480	PASS	-	-	-	-	-	Del	-	D	83031063	83031070	1	21	433.115	-	-	6	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	2	6	3	6	22	22	22	22	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556732	9	83225653	GT	G	261	PASS	-	-	-	-	-	Del	-	D	83225653	83225661	1	15	324.836	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	3	4	23	29	23	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556899	9	83582667	TA	T	457	PASS	-	-	-	-	-	Del	-	D	83582667	83582677	1	21	433.115	-	-	9	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	2	6	2	6	12	29	12	29	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556932	9	83653187	GA	G	360	PASS	-	-	-	-	-	Del	-	D	83653187	83653197	1	16	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	3	3	4	22	22	22	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760556982	9	83815325	TA	T	360	PASS	-	-	-	-	-	Del	-	D	83815325	83815335	1	16	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	3	3	3	23	20	23	20	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557156	9	84297000	C	CA	300	PASS	TLE1	CCDS6661.1	r.?	-	-	Ins	intronic	I	84297000	84297009	1	12	267.686	-	-	8	1	1	TLE1|CCDS6661.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TLE1|CCDS6661.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	2	5	4	30	24	30	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557327	9	84849370	CAAGA	C	329	PASS	-	-	-	-	-	Del	-	D	84849370	84849379	4	15	324.836	-	-	2	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	2	4	2	4	30	25	30	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557414	9	85176450	A	AT	413	PASS	-	-	-	-	-	Ins	-	I	85176450	85176459	1	24	428.298	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	5	4	7	27	15	27	15	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557496	9	85549182	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	85549182	85549191	1	49	640.039	-	-	8	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	6	8	7	30	33	30	33	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557524	9	85692502	GA	G	360	PASS	-	-	-	-	-	Del	-	D	85692502	85692511	1	16	322.428	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	6	3	27	34	27	34	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557573	9	85878401	CATT	C	269	PASS	FRMD3	CCDS43840.1	r.?	-	-	Del	intronic	D	85878401	85878407	3	12	270.095	-	-	1	1	1	FRMD3|CCDS43840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD3|CCDS43840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	4	5	17	24	18	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557693	9	86201927	GA	G	300	PASS	-	-	-	-	-	Del	-	D	86201927	86201936	1	6	268.289	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	0	6	1	22	19	22	19	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557766	9	86321863	AT	A	480	PASS	UBQLN1	CCDS6663.1	r.?	-	-	Del	intronic	D	86321863	86321873	1	25	433.115	-	-	9	1	1	UBQLN1|CCDS6663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBQLN1|CCDS6663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	4	5	7	23	31	23	31	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557834	9	86506971	ATG	A	401	PASS	KIF27	CCDS6665.1	r.?	-	-	Del	intronic	D	86506971	86506985	2	24	433.115	-	-	6	1	1	KIF27|CCDS6665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF27|CCDS6665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	5	3	8	28	31	28	31	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760557861	9	86572987	CT	C	300	PASS	C9orf64	CCDS6666.2	r.?	-	-	Del	upstream	D	86572987	86572997	1	10	270.697	-	-	9	1	1	C9orf64|CCDS6666.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C9orf64|CCDS6666.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	15	18	15	0	0	./.	1	4	2	4	25	23	25	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558069	9	87103163	T	TC	420	PASS	-	-	-	-	-	Ins	-	I	87103163	87103169	1	18	374.761	-	-	5	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	5	2	7	2	27	20	28	20	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558133	9	87298071	TTG	T	300	PASS	NTRK2	CCDS35051.1	r.?	-	-	Del	intronic	D	87298071	87298089	2	12	270.697	-	-	8	1	1	NTRK2|CCDS35051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK2|CCDS35051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	2	3	3	5	20	29	20	29	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558202	9	87552566	AT	A	420	PASS	NTRK2	CCDS6671.1	r.?	-	-	Del	intronic	D	87552566	87552576	1	18	378.975	-	-	9	1	1	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	2	6	3	37	25	37	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558227	9	87638502	AT	A	360	PASS	NTRK2	CCDS6671.1	r.5606delU	c.?	p.?	Del	3'UTR variant	D	87638502	87638507	1	7	324.234	-	-	4	1	1	NTRK2|CCDS6671.1|r.5606delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	NTRK2|CCDS6671.1|r.5606delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	16	12	16	0	0	./.	0	6	1	6	10	29	10	29	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558294	9	87861003	TA	T	420	PASS	-	-	-	-	-	Del	-	D	87861003	87861013	1	20	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	4	3	6	3	22	19	22	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558302	9	87892841	AG	A	532	PASS	-	-	-	-	-	Del	-	D	87892841	87892844	1	35	538.383	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	6	4	7	6	23	19	23	19	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558540	9	88824410	A	AAG	720	PASS	-	-	-	-	-	Ins	-	I	88824410	88824420	2	49	632.213	-	-	4	1	1	-	-	./.	0	0	0	0	11	4	12	4	0	0	./.	6	6	6	7	29	28	29	28	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558576	9	88908404	TA	T	360	PASS	ZCCHC6	CCDS35057.1	r.?	-	-	Del	intronic	D	88908404	88908414	1	16	324.836	-	-	9	1	1	ZCCHC6|CCDS35057.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC6|CCDS35057.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	3	3	30	29	30	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558620	9	89007213	CA	C	276	PASS	-	-	-	-	-	Del	-	D	89007213	89007222	1	12	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	2	3	3	3	20	26	20	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558647	9	89075839	CT	C	420	PASS	-	-	-	-	-	Del	-	D	89075839	89075847	1	18	378.373	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	6	5	29	31	29	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558758	9	89387589	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	89387589	89387598	1	12	267.084	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	16	15	0	0	./.	2	3	5	4	29	42	29	42	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760558981	9	90219464	AT	A	540	PASS	DAPK1	CCDS43842.1	r.?	-	-	Del	intronic	D	90219464	90219474	1	28	487.254	-	-	9	1	1	DAPK1|CCDS43842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAPK1|CCDS43842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	6	3	7	22	29	22	29	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559073	9	90574622	CA	C	300	PASS	-	-	-	-	-	Del	-	D	90574622	90574628	1	10	270.697	-	-	5	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	7	1	31	11	31	11	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559124	9	90743576	TC	T	267	PASS	-	-	-	-	-	Del	-	D	90743576	90743583	1	15	320.622	-	-	6	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	2	4	4	6	21	23	21	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559246	9	90986982	AT	A	420	PASS	-	-	-	-	-	Del	-	D	90986982	90986991	1	20	378.975	-	-	8	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	4	3	7	18	32	18	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559251	9	91006251	GA	G	360	PASS	SPIN1	CCDS43843.1	r.?	-	-	Del	intronic	D	91006251	91006261	1	15	324.836	-	-	9	1	1	SPIN1|CCDS43843.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPIN1|CCDS43843.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	4	2	4	2	35	18	35	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559275	9	91068052	CT	C	480	PASS	SPIN1	CCDS43843.1	r.?	-	-	Del	intronic	D	91068052	91068062	1	24	427.696	-	-	9	1	1	SPIN1|CCDS43843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPIN1|CCDS43843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	5	3	9	4	33	24	33	24	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559296	9	91139510	TA	T	300	PASS	-	-	-	-	-	Del	-	D	91139510	91139519	1	12	267.686	-	-	8	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	2	3	3	3	16	19	16	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559334	9	91248285	GT	G	300	PASS	-	-	-	-	-	Del	-	D	91248285	91248295	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	4	2	24	24	24	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559335	9	91256180	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	91256180	91256200	2	12	270.697	-	-	9	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	3	2	39	9	39	9	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559373	9	91412729	GT	G	269	PASS	-	-	-	-	-	Del	-	D	91412729	91412739	1	6	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	0	5	0	5	2	30	2	30	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559415	9	91544399	CT	C	300	PASS	-	-	-	-	-	Del	-	D	91544399	91544408	1	6	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	0	5	0	5	13	23	13	23	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559502	9	91824552	TC	T	300	PASS	-	-	-	-	-	Del	-	D	91824552	91824560	1	10	270.697	-	-	7	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	1	5	4	21	27	21	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559722	9	93005548	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	93005548	93005555	1	14	374.761	-	-	6	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	6	1	6	1	24	16	24	16	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559800	9	93266901	CT	C	300	PASS	-	-	-	-	-	Del	-	D	93266901	93266910	1	10	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	1	5	3	22	3	22	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559806	9	93296474	CA	C	420	PASS	-	-	-	-	-	Del	-	D	93296474	93296484	1	18	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	2	7	3	25	8	25	8	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760559880	9	93541506	TA	T	420	PASS	-	-	-	-	-	Del	-	D	93541506	93541516	1	18	378.975	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	5	2	7	12	21	12	21	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760560023	9	94053766	TG	T	449	PASS	AUH	CCDS6689.1	r.?	-	-	Del	intronic	D	94053766	94053770	1	21	433.115	-	-	3	1	1	AUH|CCDS6689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUH|CCDS6689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	2	6	4	8	23	33	23	33	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760560119	9	94363100	AT	A	420	PASS	ROR2	ENST00000375715	r.?	-	-	Del	intronic	D	94363100	94363105	1	20	378.975	-	-	4	1	1	ROR2|ENST00000375715|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ROR2|ENST00000375715|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	3	6	5	24	21	24	21	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760560190	9	94540150	GA	G	360	PASS	ROR2	CCDS6691.1	r.?	-	-	Del	intronic	D	94540150	94540160	1	7	324.836	-	-	9	1	1	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	0	6	1	23	11	23	11	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760560460	9	95375906	TC	T	420	PASS	IPPK	CCDS6699.1	r.3960delG	c.?	p.?	Del	3'UTR variant	D	95375906	95375913	1	20	378.975	-	-	6	1	1	IPPK|CCDS6699.1|r.3960delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	IPPK|CCDS6699.1|r.3960delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	5	11	5	0	0	./.	3	4	5	5	20	26	20	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760560607	9	95826339	CT	C	300	PASS	SUSD3	CCDS6701.1	r.?	-	-	Del	intronic	D	95826339	95826349	1	10	270.697	-	-	9	1	1	SUSD3|CCDS6701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUSD3|CCDS6701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	4	1	4	1	26	23	26	23	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760560953	9	96793838	CTAAAT	C	300	PASS	PTPDC1	CCDS6707.1	r.?	-	-	Del	intronic	D	96793838	96793846	5	12	270.697	-	-	1	1	1	PTPDC1|CCDS6707.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPDC1|CCDS6707.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	3	2	25	19	25	19	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561053	9	97064830	AT	A	420	PASS	ZNF169	CCDS6709.2	r.?	-	-	Del	downstream	D	97064830	97064836	1	20	377.169	-	-	5	1	1	ZNF169|CCDS6709.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF169|CCDS6709.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	17	14	17	0	0	./.	3	4	3	5	20	27	20	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561136	9	97344405	TA	T	300	PASS	FBP2	CCDS6711.1	r.?	-	-	Del	intronic	D	97344405	97344410	1	10	270.697	-	-	4	1	1	FBP2|CCDS6711.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBP2|CCDS6711.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	4	1	5	1	26	23	26	23	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561216	9	97509157	TC	T	420	PASS	MIR24-1	CCDS6713.1	r.?	-	-	Del	intronic	D	97509157	97509165	1	20	378.373	-	-	7	1	1	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	4	3	6	18	32	18	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561233	9	97575300	CA	C	389	PASS	MIR24-1	CCDS6713.1	r.?	-	-	Del	intronic	D	97575300	97575310	1	20	378.975	-	-	9	1	1	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	3	5	5	33	25	33	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561315	9	97870926	AT	A	420	PASS	FANCC	CCDS35071.1	r.?	-	-	Del	intronic	D	97870926	97870933	1	20	377.771	-	-	6	1	1	FANCC|CCDS35071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FANCC|CCDS35071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	4	3	7	24	22	24	22	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561407	9	98209616	TG	T	360	PASS	PTCH1	CCDS6714.1	r.4109delC	c.3921delC	p.R1308fs*64	Del	frameshift	D	98209616	98209624	1	15	324.836	-	-	7	1	1	PTCH1|CCDS6714.1|r.4109delC|c.3921delC|p.R1308fs*64|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PTCH1|CCDS6714.1|r.4109delC|c.3921delC|p.R1308fs*64|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	15	4	15	4	0	0	./.	4	2	4	2	17	16	17	16	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561417	9	98282981	AT	A	480	PASS	PTCH1	CCDS47996.1	r.?	-	-	Del	upstream	D	98282981	98282986	1	25	433.115	-	-	4	1	1	PTCH1|CCDS47996.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PTCH1|CCDS47996.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	6	11	6	0	0	./.	4	4	4	5	32	27	32	27	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561430	9	98339632	TA	T	420	PASS	-	-	-	-	-	Del	-	D	98339632	98339641	1	20	378.373	-	-	8	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	4	3	4	4	17	27	17	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561566	9	98711844	GA	G	300	PASS	C9orf102	CCDS35072.1	r.?	-	-	Del	intronic	D	98711844	98711854	1	6	270.697	-	-	9	1	1	C9orf102|CCDS35072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf102|CCDS35072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	0	5	1	7	24	30	24	30	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561604	9	98896394	GA	G	480	PASS	-	-	-	-	-	Del	-	D	98896394	98896404	1	25	432.513	-	-	9	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	4	4	5	5	27	30	27	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561720	9	99213321	GGGA	G	298	PASS	HABP4	CCDS6719.1	r.?	-	-	Del	intronic	D	99213321	99213333	3	16	318.816	-	-	3	1	1	HABP4|CCDS6719.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HABP4|CCDS6719.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	3	3	3	22	15	22	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561770	9	99327193	CT	C	300	PASS	CDC14C	CCDS6722.1	r.?	-	-	Del	intronic	D	99327193	99327200	1	12	270.697	-	-	6	1	1	CDC14C|CCDS6722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC14C|CCDS6722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	2	4	21	30	21	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561893	9	99784938	A	AG	255	PASS	-	-	-	-	-	Ins	-	I	99784938	99784948	1	20	366.934	-	-	9	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	4	3	5	5	21	22	21	22	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561929	9	99887982	C	CA	540	PASS	AL445670.2	ENST00000504063	r.?	-	-	Ins	intronic	I	99887982	99887990	1	28	481.836	-	-	7	1	1	AL445670.2|ENST00000504063|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL445670.2|ENST00000504063|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	3	6	3	6	14	14	14	14	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760561945	9	99949899	AT	A	300	PASS	-	-	-	-	-	Del	-	D	99949899	99949909	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562107	9	100501749	GC	G	300	PASS	-	-	-	-	-	Del	-	D	100501749	100501755	1	10	270.697	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	1	4	1	4	12	24	12	24	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562134	9	100583149	AT	A	360	PASS	-	-	-	-	-	Del	-	D	100583149	100583159	1	16	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	4	36	22	36	22	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562216	9	100860031	G	GA	300	PASS	TRIM14	CCDS6734.1	r.?	-	-	Ins	intronic	I	100860031	100860041	1	10	267.686	-	-	9	1	1	TRIM14|CCDS6734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIM14|CCDS6734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	4	1	8	2	34	23	34	23	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562234	9	100899394	CA	C	360	PASS	CORO2A	CCDS6735.1	r.?	-	-	Del	intronic	D	100899394	100899401	1	15	323.03	-	-	6	1	1	CORO2A|CCDS6735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORO2A|CCDS6735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	4	4	5	23	17	23	17	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562372	9	101260112	CA	C	300	PASS	GABBR2	CCDS6736.1	r.?	-	-	Del	intronic	D	101260112	101260120	1	12	268.891	-	-	7	1	1	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	3	3	3	26	13	26	13	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562511	9	101743739	CA	C	420	PASS	COL15A1	CCDS35081.1	r.?	-	-	Del	intronic	D	101743739	101743749	1	18	378.975	-	-	9	1	1	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	2	6	3	16	21	16	21	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562520	9	101801803	CA	C	360	PASS	COL15A1	CCDS35081.1	r.?	-	-	Del	intronic	D	101801803	101801812	1	15	324.234	-	-	8	1	1	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	2	5	24	19	24	19	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562524	9	101811954	CT	C	360	PASS	COL15A1	CCDS35081.1	r.?	-	-	Del	intronic	D	101811954	101811962	1	12	322.428	-	-	7	1	1	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	5	1	5	1	24	26	24	26	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562571	9	101976253	GT	G	300	PASS	ALG2	CCDS6739.1	r.?	-	-	Del	downstream	D	101976253	101976259	1	12	270.697	-	-	5	1	1	ALG2|CCDS6739.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ALG2|CCDS6739.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	9	17	9	17	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562579	9	101988705	CTCT	C	269	PASS	ALG2	CCDS6739.1	r.?	-	-	Del	upstream	D	101988705	101988713	3	10	268.289	-	-	2	1	1	ALG2|CCDS6739.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SEC61B|CCDS6741.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	4	3	5	21	31	21	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562592	9	102032046	GA	G	360	PASS	-	-	-	-	-	Del	-	D	102032046	102032055	1	16	324.836	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	4	6	20	34	20	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562618	9	102097712	TG	T	420	PASS	-	-	-	-	-	Del	-	D	102097712	102097720	1	20	378.975	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	3	4	4	22	35	22	35	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562698	9	102479036	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	102479036	102479045	1	10	267.686	-	-	8	1	1	-	-	./.	0	0	0	0	22	12	23	12	0	0	./.	4	1	8	1	22	13	22	13	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562831	9	102982682	AT	A	300	PASS	INVS	CCDS6746.1	r.?	-	-	Del	intronic	D	102982682	102982686	1	12	270.697	-	-	3	1	1	INVS|CCDS6746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INVS|CCDS6746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	3	3	7	22	30	22	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562872	9	103080249	C	CA	300	PASS	TEX10	CCDS6748.1	r.?	-	-	Ins	intronic	I	103080249	103080258	1	12	267.686	-	-	8	1	1	TEX10|CCDS6748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TEX10|CCDS6748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	23	9	23	0	0	./.	3	2	4	3	34	27	34	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760562982	9	103479844	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	103479844	103479853	1	12	265.278	-	-	8	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	3	2	4	3	29	21	29	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563156	9	104181604	CTA	C	360	PASS	ALDOB	CCDS6756.1	r.?	-	-	Del	downstream	D	104181604	104181608	2	16	324.234	-	-	1	1	1	ALDOB|CCDS6756.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ALDOB|CCDS6756.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	19	10	19	10	0	0	./.	3	3	4	4	28	32	28	32	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563217	9	104411184	GT	G	360	PASS	GRIN3A	CCDS6758.1	r.?	-	-	Del	intronic	D	104411184	104411194	1	15	324.836	-	-	9	1	1	GRIN3A|CCDS6758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN3A|CCDS6758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	7	2	37	22	37	22	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563221	9	104416894	CT	C	420	PASS	GRIN3A	CCDS6758.1	r.?	-	-	Del	intronic	D	104416894	104416904	1	8	378.975	-	-	9	1	1	GRIN3A|CCDS6758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN3A|CCDS6758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	7	0	8	0	25	2	25	2	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563319	9	104933942	A	AT	257	PASS	-	-	-	-	-	Ins	-	I	104933942	104933950	1	12	267.686	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	2	3	3	23	24	23	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563395	9	105271460	TAA	T	420	PASS	-	-	-	-	-	Del	-	D	105271460	105271464	2	20	378.975	-	-	3	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	3	4	3	4	20	33	20	33	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563597	9	106008754	GA	G	300	PASS	-	-	-	-	-	Del	-	D	106008754	106008764	1	10	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	2	4	26	12	26	12	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563603	9	106022690	CA	C	480	PASS	-	-	-	-	-	Del	-	D	106022690	106022698	1	24	433.115	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	5	5	33	25	33	25	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563768	9	106739313	CTTTA	C	420	PASS	-	-	-	-	-	Del	-	D	106739313	106739323	4	20	378.975	-	-	2	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	4	5	6	21	30	21	30	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563815	9	106874542	AT	A	420	PASS	SMC2	CCDS35086.1	r.?	-	-	Del	intronic	D	106874542	106874550	1	18	375.965	-	-	7	1	1	SMC2|CCDS35086.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMC2|CCDS35086.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	2	5	3	5	20	23	20	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760563840	9	106941136	AT	A	420	PASS	-	-	-	-	-	Del	-	D	106941136	106941146	1	14	378.373	-	-	9	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	1	6	1	6	22	23	22	23	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564010	9	107568387	GA	G	360	PASS	ABCA1	CCDS6762.1	r.?	-	-	Del	intronic	D	107568387	107568397	1	15	324.836	-	-	9	1	1	ABCA1|CCDS6762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCA1|CCDS6762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	2	9	2	29	23	29	23	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564323	9	108416352	AT	A	420	PASS	-	-	-	-	-	Del	-	D	108416352	108416362	1	18	374.159	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	5	5	22	24	22	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564344	9	108459855	AT	A	300	PASS	TMEM38B	CCDS6768.1	r.?	-	-	Del	intronic	D	108459855	108459865	1	6	270.697	-	-	9	1	1	TMEM38B|CCDS6768.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM38B|CCDS6768.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	0	5	0	6	1	25	1	25	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564429	9	108631373	GT	G	689	PASS	-	-	-	-	-	Del	-	D	108631373	108631383	1	49	649.672	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	6	6	10	26	28	26	28	6	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564471	9	108770407	CT	C	480	PASS	-	-	-	-	-	Del	-	D	108770407	108770415	1	24	433.115	-	-	7	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	5	3	6	38	27	38	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564478	9	108790218	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	108790218	108790227	1	12	266.482	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	11	29	11	29	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564608	9	109346200	GA	G	360	PASS	-	-	-	-	-	Del	-	D	109346200	109346210	1	16	323.03	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	5	4	23	14	23	14	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564630	9	109496769	AT	A	420	PASS	-	-	-	-	-	Del	-	D	109496769	109496777	1	18	378.975	-	-	7	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	5	2	5	2	27	41	27	41	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564666	9	109648819	CA	C	360	PASS	ZNF462	CCDS35096.1	r.?	-	-	Del	intronic	D	109648819	109648828	1	16	324.836	-	-	8	1	1	ZNF462|CCDS35096.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF462|CCDS35096.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	4	5	23	22	23	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564896	9	110340119	TA	T	360	PASS	-	-	-	-	-	Del	-	D	110340119	110340129	1	16	323.632	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	3	3	20	12	20	12	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760564999	9	110669275	CT	C	300	PASS	-	-	-	-	-	Del	-	D	110669275	110669285	1	10	269.493	-	-	9	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	1	4	3	6	30	27	30	27	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565067	9	110881248	AT	A	360	PASS	-	-	-	-	-	Del	-	D	110881248	110881258	1	12	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	1	5	3	8	26	29	26	29	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565480	9	112147412	TC	T	480	PASS	PTPN3	CCDS48001.1	r.?	-	-	Del	intronic	D	112147412	112147417	1	24	433.115	-	-	4	1	1	PTPN3|CCDS48001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN3|CCDS48001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	3	5	4	6	24	26	24	26	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565527	9	112287502	TA	T	540	PASS	-	-	-	-	-	Del	-	D	112287502	112287512	1	24	487.254	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	7	4	9	23	22	23	22	4	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565552	9	112342781	TA	T	689	PASS	-	-	-	-	-	Del	-	D	112342781	112342791	1	40	648.468	-	-	9	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	9	4	11	16	32	16	32	4	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565623	9	112621707	TA	T	360	PASS	PALM2	CCDS48002.1	r.?	-	-	Del	intronic	D	112621707	112621713	1	15	324.836	-	-	5	1	1	PALM2|CCDS48002.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PALM2|CCDS48002.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	2	4	2	24	20	24	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565758	9	112978081	CA	C	360	PASS	-	-	-	-	-	Del	-	D	112978081	112978091	1	15	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	2	4	4	34	27	34	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565842	9	113153080	TA	T	420	PASS	SVEP1	CCDS48004.1	r.?	-	-	Del	intronic	D	113153080	113153090	1	20	378.975	-	-	9	1	1	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	4	3	4	5	11	16	11	16	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760565973	9	113678070	AT	A	300	PASS	LPAR1	CCDS6777.1	r.?	-	-	Del	intronic	D	113678070	113678076	1	6	270.697	-	-	5	1	1	LPAR1|CCDS6777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPAR1|CCDS6777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	0	5	0	6	6	29	6	29	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566156	9	114204341	CA	C	300	PASS	KIAA0368	CCDS48006.1	r.?	-	-	Del	intronic	D	114204341	114204349	1	12	270.697	-	-	7	1	1	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	3	3	23	22	23	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566158	9	114215710	TG	T	360	PASS	KIAA0368	CCDS48006.1	r.?	-	-	Del	intronic	D	114215710	114215718	1	16	324.836	-	-	7	1	1	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	3	4	19	24	19	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566208	9	114322119	CT	C	360	PASS	ZNF483	CCDS35105.1	r.?	-	-	Del	intronic	D	114322119	114322128	1	15	324.836	-	-	8	1	1	ZNF483|CCDS35105.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF483|CCDS35105.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	4	3	6	20	26	20	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566287	9	114549370	GA	G	329	PASS	C9orf84	CCDS6781.3	r.?	-	-	Del	intronic	D	114549370	114549379	1	15	322.428	-	-	8	1	1	C9orf84|CCDS6781.3|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C9orf84|CCDS6781.3|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	4	2	5	2	26	30	26	30	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566291	9	114552032	CA	C	300	PASS	C9orf84	CCDS6781.3	r.?	-	-	Del	intronic	D	114552032	114552041	1	10	270.697	-	-	8	1	1	C9orf84|CCDS6781.3|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C9orf84|CCDS6781.3|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	5	2	24	9	24	9	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566482	9	114962410	GAGA	G	269	PASS	-	-	-	-	-	Del	-	D	114962410	114962419	3	12	270.697	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	5	4	38	24	38	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566703	9	115318360	CA	C	360	PASS	KIAA1958	CCDS35108.1	r.?	-	-	Del	intronic	D	115318360	115318370	1	16	324.234	-	-	9	1	1	KIAA1958|CCDS35108.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1958|CCDS35108.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	3	3	6	21	34	21	34	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566866	9	115753027	CT	C	360	PASS	-	-	-	-	-	Del	-	D	115753027	115753037	1	16	321.826	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	3	5	5	17	33	17	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566899	9	115887037	CT	C	360	PASS	-	-	-	-	-	Del	-	D	115887037	115887046	1	15	324.836	-	-	8	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	4	2	6	2	21	25	21	25	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566950	9	116017955	CA	C	300	PASS	SLC31A1	CCDS6789.1	r.?	-	-	Del	intronic	D	116017955	116017965	1	10	270.697	-	-	9	1	1	SLC31A1|CCDS6789.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC31A1|CCDS6789.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	4	1	4	1	17	16	17	16	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760566954	9	116028014	AT	A	420	PASS	SLC31A1	CCDS6789.1	r.?	-	-	Del	downstream	D	116028014	116028023	1	18	378.975	-	-	8	1	1	SLC31A1|CCDS6789.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SLC31A1|ENST00000374210|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	5	3	6	18	26	18	26	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567049	9	116257163	CT	C	540	PASS	RGS3	CCDS43869.1	r.?	-	-	Del	intronic	D	116257163	116257173	1	30	487.254	-	-	9	1	-	RGS3|CCDS43869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS3|CCDS43869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	4	7	6	20	34	20	34	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567176	9	116639152	CT	C	269	PASS	ZNF618	CCDS48008.1	r.?	-	-	Del	intronic	D	116639152	116639162	1	10	256.849	-	-	9	1	1	ZNF618|CCDS48008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF618|CCDS48008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	1	4	1	4	4	25	4	25	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567179	9	116646985	GAC	G	300	PASS	ZNF618	CCDS48008.1	r.?	-	-	Del	intronic	D	116646985	116647000	2	6	269.493	-	-	7	1	1	ZNF618|CCDS48008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF618|CCDS48008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	0	5	0	6	29	34	29	34	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567286	9	117009695	AT	A	300	PASS	COL27A1	CCDS6802.1	r.?	-	-	Del	intronic	D	117009695	117009703	1	6	270.697	-	-	7	1	1	COL27A1|CCDS6802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL27A1|CCDS6802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	0	8	0	25	2	25	2	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567289	9	117016400	TG	T	300	PASS	COL27A1	CCDS6802.1	r.?	-	-	Del	intronic	D	117016400	117016408	1	12	270.095	-	-	7	1	1	COL27A1|CCDS6802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL27A1|CCDS6802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	3	3	21	25	21	25	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567378	9	117296522	TA	T	269	PASS	-	-	-	-	-	Del	-	D	117296522	117296531	1	12	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	2	4	18	14	18	14	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567495	9	117568636	TTCA	T	449	PASS	TNFSF15	CCDS6809.1	r.?	-	-	Del	upstream	D	117568636	117568643	3	21	433.115	-	-	2	1	1	TNFSF15|CCDS6809.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TNFSF15|CCDS6809.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	6	11	6	0	0	./.	6	2	7	2	29	12	29	12	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567533	9	117699245	CT	C	420	PASS	-	-	-	-	-	Del	-	D	117699245	117699254	1	18	378.975	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	2	9	2	23	24	23	24	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567768	9	118307070	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	118307070	118307078	1	16	321.224	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	3	3	3	18	22	18	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567825	9	118408383	GA	G	300	PASS	-	-	-	-	-	Del	-	D	118408383	118408391	1	12	270.697	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	4	3	27	20	27	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567910	9	118781060	AT	A	780	PASS	-	-	-	-	-	Del	-	D	118781060	118781069	1	56	703.812	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	7	6	7	7	31	24	31	24	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760567980	9	119085848	GA	G	337	PASS	PAPPAS	CCDS6813.1	r.?	-	-	Del	intronic	D	119085848	119085857	1	16	324.836	-	-	8	1	-	PAPPAS|CCDS6813.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAPPAS|CCDS6813.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	3	5	3	36	29	36	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568016	9	119221890	TA	T	360	PASS	ASTN2	CCDS48009.1	r.?	-	-	Del	intronic	D	119221890	119221899	1	12	324.836	-	-	8	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	1	5	2	5	25	15	25	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568034	9	119270764	A	AGT	300	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119270764	119270783	2	12	263.472	-	-	9	1	-	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	3	3	35	36	36	36	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568086	9	119439592	GA	G	300	PASS	ASTN2	CCDS48009.1	r.?	-	-	Del	intronic	D	119439592	119439602	1	10	270.697	-	-	9	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	4	1	5	1	28	20	28	20	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568092	9	119451386	TC	T	480	PASS	ASTN2	CCDS48009.1	r.?	-	-	Del	intronic	D	119451386	119451394	1	25	433.115	-	-	7	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	6	4	26	26	26	26	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568395	9	120286880	AT	A	600	PASS	-	-	-	-	-	Del	-	D	120286880	120286888	1	35	541.394	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	6	4	6	24	23	24	23	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568455	9	120447476	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	120447476	120447492	2	10	270.697	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	1	4	2	4	15	22	15	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568640	9	121052099	AT	A	420	PASS	-	-	-	-	-	Del	-	D	121052099	121052107	1	14	378.975	-	-	7	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	1	6	2	7	4	28	4	28	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568734	9	121312946	CT	C	300	PASS	-	-	-	-	-	Del	-	D	121312946	121312956	1	12	270.697	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	2	5	30	21	30	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568803	9	121594942	CA	C	540	PASS	-	-	-	-	-	Del	-	D	121594942	121594952	1	30	487.254	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	4	7	7	26	26	26	26	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568901	9	121975420	C	CT	420	PASS	DBC1	CCDS6822.1	r.?	-	-	Ins	intronic	I	121975420	121975427	1	20	374.159	-	-	6	1	1	DBC1|CCDS6822.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DBC1|CCDS6822.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	4	4	7	23	43	24	43	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568972	9	122218206	AG	A	300	PASS	-	-	-	-	-	Del	-	D	122218206	122218213	1	10	267.686	-	-	6	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	7	4	24	27	24	27	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568976	9	122234132	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	122234132	122234142	1	15	321.224	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	2	5	3	22	22	22	22	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760568987	9	122263355	GCT	G	780	PASS	-	-	-	-	-	Del	-	D	122263355	122263371	2	54	703.812	-	-	7	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	5	8	6	9	26	33	26	33	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569031	9	122416424	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	122416424	122416428	1	24	428.298	-	-	3	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	5	5	5	30	27	30	27	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569052	9	122482564	AT	A	660	PASS	-	-	-	-	-	Del	-	D	122482564	122482570	1	40	594.329	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	7	4	8	9	34	26	34	26	8	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569176	9	122981858	TA	T	480	PASS	-	-	-	-	-	Del	-	D	122981858	122981868	1	25	433.115	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	5	4	18	18	18	18	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569315	9	123474371	CA	C	360	PASS	MEGF9	CCDS48010.1	r.?	-	-	Del	intronic	D	123474371	123474378	1	15	324.836	-	-	6	1	1	MEGF9|CCDS48010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEGF9|CCDS48010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	5	2	26	13	26	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569372	9	123606773	CA	C	480	PASS	PSMD5	CCDS6824.1	r.?	-	-	Del	upstream	D	123606773	123606782	1	25	433.115	-	-	8	1	1	PSMD5|CCDS6824.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PSMD5|CCDS6824.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	6	9	6	0	0	./.	4	4	6	5	45	23	45	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569391	9	123662273	CT	C	360	PASS	TRAF1	CCDS6825.1	r.?	-	-	Del	downstream	D	123662273	123662283	1	15	321.224	-	-	9	1	1	TRAF1|CCDS6825.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TRAF1|CCDS6825.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	4	2	21	20	21	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569533	9	124173705	AT	A	360	PASS	-	-	-	-	-	Del	-	D	124173705	124173715	1	15	324.234	-	-	9	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	2	4	4	7	27	21	27	21	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569791	9	124905205	CA	C	360	PASS	NDUFA8	CCDS6835.1	r.?	-	-	Del	downstream	D	124905205	124905214	1	15	324.836	-	-	8	1	1	NDUFA8|CCDS6835.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NDUFA8|CCDS6835.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	4	5	16	28	16	28	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569833	9	125059587	CA	C	300	PASS	MRRF	CCDS6840.1	r.?	-	-	Del	intronic	D	125059587	125059597	1	12	270.697	-	-	9	1	1	MRRF|CCDS6840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRRF|CCDS6840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	4	2	30	4	30	4	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760569840	9	125086238	G	GA	540	PASS	MRRF	CCDS6840.1	r.?	-	-	Ins	downstream	I	125086238	125086246	1	30	480.632	-	-	7	1	1	MRRF|CCDS6840.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	MRRF|CCDS6840.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	10	18	10	19	0	0	./.	5	4	7	4	36	22	36	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570037	9	125699876	CA	C	420	PASS	RABGAP1	CCDS6848.2	r.?	-	-	Del	upstream	D	125699876	125699886	1	20	376.567	-	-	9	1	1	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	5	5	24	21	24	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570074	9	125800648	AT	A	360	PASS	RABGAP1	CCDS6848.2	r.?	-	-	Del	intronic	D	125800648	125800658	1	12	324.836	-	-	9	1	1	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	1	5	1	7	10	22	10	22	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570076	9	125806346	GT	G	343	PASS	RABGAP1	CCDS6848.2	r.?	-	-	Del	intronic	D	125806346	125806356	1	18	378.975	-	-	9	1	1	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	3	5	20	23	20	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570103	9	125899677	GT	G	420	PASS	STRBP	CCDS6851.1	r.?	-	-	Del	intronic	D	125899677	125899686	1	20	378.373	-	-	8	1	1	STRBP|CCDS6851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STRBP|CCDS6851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	3	4	5	22	31	22	31	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570384	9	126952038	CA	C	600	PASS	-	-	-	-	-	Del	-	D	126952038	126952046	1	36	540.792	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	5	7	5	18	25	18	25	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570445	9	127141726	AC	A	600	PASS	PSMB7	CCDS6855.1	r.?	-	-	Del	intronic	D	127141726	127141728	1	35	538.383	-	-	1	1	1	PSMB7|CCDS6855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMB7|CCDS6855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	6	8	9	30	27	30	27	8	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570500	9	127346751	AT	A	540	PASS	NR6A1	CCDS35137.1	r.?	-	-	Del	intronic	D	127346751	127346758	1	24	486.652	-	-	6	1	1	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	7	2	9	3	32	22	32	22	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570521	9	127429198	AG	A	420	PASS	NR6A1	CCDS35137.1	r.?	-	-	Del	intronic	D	127429198	127429202	1	20	378.975	-	-	3	1	1	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	4	4	4	22	27	22	27	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570587	9	127582119	AT	A	300	PASS	OLFML2A	CCDS6857.2	r.?	-	-	Del	downstream	D	127582119	127582127	1	10	270.095	-	-	7	1	1	OLFML2A|CCDS6857.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OLFML2A|CCDS6857.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	6	2	31	19	31	19	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570645	9	127664771	AT	A	329	PASS	GOLGA1	CCDS6860.1	r.?	-	-	Del	intronic	D	127664771	127664780	1	12	324.836	-	-	8	1	1	GOLGA1|CCDS6860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GOLGA1|CCDS6860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	1	5	3	5	32	20	32	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570648	9	127676349	GA	G	898	PASS	GOLGA1	CCDS6860.1	r.?	-	-	Del	intronic	D	127676349	127676359	1	80	866.23	-	-	9	1	1	GOLGA1|CCDS6860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GOLGA1|CCDS6860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	9	7	10	8	32	31	32	31	10	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570794	9	127998972	CCTT	C	312	PASS	HSPA5	CCDS6863.1	r.2065_2067delAAG	c.1861_1863delAAG	p.K621delK	Del	inframe	D	127998972	127998982	3	15	324.234	-	-	3	1	1	HSPA5|CCDS6863.1|r.2065_2067delAAG|c.1861_1863delAAG|p.K621delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	HSPA5|CCDS6863.1|r.2065_2067delAAG|c.1861_1863delAAG|p.K621delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	7	4	7	4	0	0	./.	4	2	4	3	27	30	27	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570814	9	128028925	CT	C	576	PASS	GAPVD1	CCDS35138.1	r.?	-	-	Del	intronic	D	128028925	128028935	1	27	541.393	-	-	9	1	1	GAPVD1|CCDS35138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GAPVD1|CCDS35138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	8	2	11	3	33	9	33	9	11	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570856	9	128124424	T	TA	360	PASS	GAPVD1	CCDS35138.1	r.?	-	-	Ins	intronic	I	128124424	128124433	1	15	321.224	-	-	8	1	1	GAPVD1|CCDS35138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GAPVD1|CCDS35138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	2	4	30	26	30	26	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570914	9	128276791	A	AT	300	PASS	MAPKAP1	CCDS35140.1	r.?	-	-	Ins	intronic	I	128276791	128276797	1	12	267.686	-	-	5	1	1	MAPKAP1|CCDS35140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAPKAP1|CCDS35140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	16	11	0	0	./.	3	2	4	3	27	28	27	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570923	9	128303159	CA	C	900	PASS	MAPKAP1	CCDS35140.1	r.?	-	-	Del	intronic	D	128303159	128303168	1	72	812.09	-	-	8	1	1	MAPKAP1|CCDS35140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAPKAP1|CCDS35140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	7	8	11	12	28	32	28	32	11	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760570926	9	128307546	CAGTA	C	540	PASS	MAPKAP1	CCDS35140.1	r.?	-	-	Del	intronic	D	128307546	128307554	4	30	487.254	-	-	1	1	1	MAPKAP1|CCDS35140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAPKAP1|CCDS35140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	5	4	5	4	29	25	29	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571056	9	128668775	AAAG	A	329	PASS	PBX3	CCDS6865.1	r.?	-	-	Del	intronic	D	128668775	128668783	3	7	324.836	-	-	2	1	1	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	0	6	0	6	11	25	11	25	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571138	9	128922956	TG	T	269	PASS	-	-	-	-	-	Del	-	D	128922956	128922963	1	10	262.268	-	-	6	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	1	4	3	5	21	35	21	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571183	9	129035787	AT	A	360	PASS	-	-	-	-	-	Del	-	D	129035787	129035796	1	16	324.234	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	3	3	6	4	33	19	33	19	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571247	9	129257307	C	CA	300	PASS	FAM125B	CCDS35142.1	r.?	-	-	Ins	intronic	I	129257307	129257314	1	10	267.686	-	-	6	1	1	FAM125B|CCDS35142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM125B|CCDS35142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	3	4	20	28	21	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571396	9	129662940	CA	C	329	PASS	-	-	-	-	-	Del	-	D	129662940	129662949	1	16	324.836	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	5	5	32	23	32	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571467	9	130004245	G	GT	540	PASS	GARNL3	ENST00000373399	r.?	-	-	Ins	upstream	I	130004245	130004248	1	18	481.234	-	-	2	1	-	GARNL3|ENST00000373399|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	GARNL3|ENST00000439286|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	10	8	10	0	0	./.	8	1	9	4	22	27	22	27	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571671	9	130592949	CA	C	329	PASS	ENG	CCDS6880.1	r.?	-	-	Del	intronic	D	130592949	130592958	1	12	324.836	-	-	8	1	-	ENG|CCDS6880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENG|CCDS6880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	1	6	8	41	31	41	31	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571848	9	130970278	AC	A	360	PASS	DNM1	CCDS43882.1	r.?	-	-	Del	intronic	D	130970278	130970284	1	16	324.234	-	-	5	1	1	DNM1|CCDS43882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM1|CCDS43882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	3	3	4	3	19	16	19	16	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571893	9	131165676	GCTTT	G	360	PASS	-	-	-	-	-	Del	-	D	131165676	131165697	4	16	324.836	-	-	5	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	3	5	3	34	29	34	29	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760571994	9	131416845	TC	T	420	PASS	WDR34	CCDS6906.2	r.?	-	-	Del	intronic	D	131416845	131416851	1	20	377.771	-	-	5	1	1	WDR34|CCDS6906.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR34|CCDS6906.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	3	4	4	6	29	34	29	34	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572030	9	131481349	AT	A	526	PASS	PKN3	CCDS6908.1	r.?	-	-	Del	intronic	D	131481349	131481357	1	30	487.254	-	-	7	1	1	PKN3|CCDS6908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKN3|CCDS6908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	5	4	7	4	28	18	28	18	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572189	9	131834324	CTG	C	540	PASS	FAM73B	CCDS6917.1	r.3601_3602delUG	c.?	p.?	Del	3'UTR variant	D	131834324	131834329	2	30	484.846	-	-	2	1	1	FAM73B|CCDS6917.1|r.3601_3602delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FAM73B|CCDS6917.1|r.3601_3602delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	9	10	9	0	0	./.	4	5	5	5	27	33	27	33	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572278	9	131975495	AG	A	689	PASS	-	-	-	-	-	Del	-	D	131975495	131975501	1	48	640.039	-	-	5	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	7	5	10	5	32	24	32	25	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572537	9	132506137	CT	C	360	PASS	PTGES	CCDS6927.1	r.?	-	-	Del	intronic	D	132506137	132506146	1	16	324.836	-	-	8	1	1	PTGES|CCDS6927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTGES|CCDS6927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	3	3	3	29	23	29	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572694	9	132694656	CT	C	540	PASS	FNBP1	CCDS48040.1	r.?	-	-	Del	intronic	D	132694656	132694666	1	24	484.846	-	-	9	1	1	FNBP1|CCDS48040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNBP1|CCDS48040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	7	2	8	2	36	21	36	21	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572840	9	132889558	G	GGA	300	PASS	GPR107	CCDS48041.1	r.?	-	-	Ins	intronic	I	132889558	132889569	2	10	264.676	-	-	5	1	1	GPR107|CCDS48041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR107|CCDS48041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	1	4	1	5	25	32	25	33	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572876	9	132959019	CA	C	300	PASS	NCS1	CCDS6932.1	r.?	-	-	Del	intronic	D	132959019	132959029	1	12	270.697	-	-	9	1	1	NCS1|CCDS6932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCS1|CCDS6932.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	2	4	2	24	32	24	32	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572925	9	133224835	TG	T	600	PASS	HMCN2	ENST00000420499	r.?	-	-	Del	intronic	D	133224835	133224842	1	35	533.567	-	-	6	1	1	HMCN2|ENST00000420499|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN2|ENST00000420499|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	4	6	6	8	34	22	34	22	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572948	9	133266332	TG	T	300	PASS	HMCN2	ENST00000277491	r.?	-	-	Del	intronic	D	133266332	133266338	1	12	270.697	-	-	5	1	1	HMCN2|ENST00000277491|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN2|ENST00000277491|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	3	5	3	26	21	26	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760572960	9	133305749	GC	G	480	PASS	HMCN2	ENST00000428715	r.1537delC	c.1536delC	p.P514fs*22	Del	frameshift	D	133305749	133305756	1	25	433.115	-	-	6	1	1	HMCN2|ENST00000428715|r.1537delC|c.1536delC|p.P514fs*22|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HMCN2|ENST00000428715|r.1537delC|c.1536delC|p.P514fs*22|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	8	11	8	0	0	./.	4	4	5	4	30	22	30	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573014	9	133434994	CA	C	300	PASS	-	-	-	-	-	Del	-	D	133434994	133435004	1	12	269.493	-	-	9	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	2	3	2	5	20	21	20	21	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573063	9	133572179	TGA	T	480	PASS	EXOSC2	CCDS6935.1	r.?	-	-	Del	intronic	D	133572179	133572193	2	25	433.115	-	-	6	1	1	EXOSC2|CCDS6935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOSC2|CCDS6935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	4	6	4	32	28	32	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573264	9	133993483	GT	G	480	PASS	AIF1L	CCDS6939.1	r.?	-	-	Del	intronic	D	133993483	133993493	1	21	431.309	-	-	9	1	1	AIF1L|CCDS6939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIF1L|CCDS6939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	6	2	6	2	30	22	30	22	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573403	9	134261090	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	134261090	134261099	1	20	374.159	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	4	4	5	33	35	33	36	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573471	9	134384550	CT	C	540	PASS	POMT1	CCDS43894.1	r.?	-	-	Del	intronic	D	134384550	134384560	1	30	486.652	-	-	9	1	1	POMT1|CCDS43894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POMT1|CCDS43894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	5	4	8	27	37	27	37	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573695	9	135058266	TC	T	360	PASS	NTNG2	CCDS6946.1	r.?	-	-	Del	intronic	D	135058266	135058274	1	15	323.632	-	-	7	1	1	NTNG2|CCDS6946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTNG2|CCDS6946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	4	2	6	3	35	23	35	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573770	9	135278251	CT	C	300	PASS	TTF1	CCDS6948.1	r.?	-	-	Del	intronic	D	135278251	135278261	1	10	270.697	-	-	9	1	1	TTF1|CCDS6948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TTF1|CCDS6948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	8	3	47	29	47	29	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573781	9	135292338	G	GT	420	PASS	C9orf171	CCDS6949.1	r.?	-	-	Ins	intronic	I	135292338	135292347	1	18	374.761	-	-	8	1	1	C9orf171|CCDS6949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C9orf171|CCDS6949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	2	7	3	18	35	19	35	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573805	9	135349078	AT	A	300	PASS	C9orf171	CCDS6949.1	r.?	-	-	Del	intronic	D	135349078	135349088	1	12	270.697	-	-	9	1	1	C9orf171|CCDS6949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf171|CCDS6949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	4	22	25	22	25	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573876	9	135584779	TA	T	360	PASS	-	-	-	-	-	Del	-	D	135584779	135584789	1	7	324.836	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	6	0	6	3	33	33	33	33	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760573966	9	135882374	GATGGTTGGATGGATGGATGGATGGATGGTGGATGTGTGGATGGATGAATGGATGAACAGATGGGTGGATGGATGGATGGATGGATGC	G	269	PASS	-	-	-	-	-	Del	-	D	135882374	135882466	87	10	264.074	-	-	1	1	-	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	4	1	0	0	24	33	28	34	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574037	9	136118909	GA	G	300	PASS	-	-	-	-	-	Del	-	D	136118909	136118918	1	10	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	4	1	31	9	31	9	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574132	9	136392637	A	AGT	420	PASS	ADAMTSL2	CCDS6976.1	r.?	-	-	Ins	upstream	I	136392637	136392652	2	18	369.945	-	-	7	1	1	ADAMTSL2|CCDS6976.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ADAMTSL2|CCDS6976.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	9	10	9	0	0	./.	2	5	4	6	27	31	28	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574157	9	136463010	GA	G	300	PASS	-	-	-	-	-	Del	-	D	136463010	136463019	1	12	270.697	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	4	31	12	31	12	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574344	9	136903582	CT	C	540	PASS	BRD3	CCDS6980.1	r.?	-	-	Del	intronic	D	136903582	136903591	1	18	481.836	-	-	8	1	1	BRD3|CCDS6980.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRD3|CCDS6980.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	8	1	9	4	33	26	33	26	9	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574497	9	137499775	CA	C	600	PASS	-	-	-	-	-	Del	-	D	137499775	137499784	1	27	541.393	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	8	2	12	15	28	15	28	2	12	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574523	9	137615161	CG	C	300	PASS	COL5A1	CCDS6982.1	r.?	-	-	Del	intronic	D	137615161	137615168	1	12	270.697	-	-	6	1	1	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	2	4	2	25	29	25	29	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574679	9	138097975	CAG	C	349	PASS	-	-	-	-	-	Del	-	D	138097975	138097988	2	15	324.836	-	-	6	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	4	2	6	2	32	24	32	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574721	9	138242797	G	GA	360	PASS	C9orf62	ENST00000320778	r.?	-	-	Ins	downstream	I	138242797	138242806	1	16	318.816	-	-	8	1	1	C9orf62|ENST00000320778|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C9orf62|ENST00000320778|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	18	13	18	14	0	0	./.	3	3	5	3	36	22	36	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574728	9	138280163	TA	T	300	PASS	-	-	-	-	-	Del	-	D	138280163	138280170	1	10	270.697	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	5	4	20	21	20	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574751	9	138336536	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	138336536	138336545	1	12	266.482	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	3	4	25	22	25	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760574936	9	138867690	ACT	A	360	PASS	-	-	-	-	-	Del	-	D	138867690	138867694	2	12	324.234	-	-	1	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	5	2	5	27	22	27	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575078	9	139353357	TA	T	360	PASS	SEC16A	ENST00000313050	r.?	-	-	Del	intronic	D	139353357	139353367	1	12	318.213	-	-	9	1	1	SEC16A|ENST00000313050|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC16A|ENST00000313050|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	5	3	5	14	30	14	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575197	9	139724477	CG	C	360	PASS	C9orf86	CCDS48058.1	r.?	-	-	Del	intronic	D	139724477	139724485	1	12	324.836	-	-	7	1	1	C9orf86|CCDS48058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf86|CCDS48058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	5	1	8	3	26	20	26	20	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575312	9	140015049	CA	C	300	PASS	-	-	-	-	-	Del	-	D	140015049	140015059	1	6	270.095	-	-	9	1	1	-	-	./.	0	0	0	0	3	15	3	15	0	0	./.	0	5	1	5	1	21	1	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575323	9	140033405	GC	G	360	PASS	GRIN1	CCDS7031.1	r.565delC	c.?	p.?	Del	5'UTR variant	D	140033405	140033410	1	15	324.836	-	-	4	1	1	GRIN1|CCDS7031.1|r.565delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	GRIN1|CCDS7031.1|r.565delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	15	5	15	5	0	0	./.	4	2	4	2	28	18	28	18	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575445	9	140515592	GCT	G	600	PASS	C9orf37	CCDS35189.1	r.?	-	-	Del	upstream	D	140515592	140515597	2	35	541.394	-	-	2	1	1	C9orf37|CCDS35189.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EHMT1|ENST00000428019|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	6	4	6	17	31	17	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575498	9	140687157	CA	C	300	PASS	EHMT1	ENST00000428019	r.?	-	-	Del	intronic	D	140687157	140687166	1	12	265.278	-	-	8	1	1	EHMT1|ENST00000428019|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EHMT1|ENST00000428019|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	5	21	24	21	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575562	9	140824420	GT	G	360	PASS	CACNA1B	ENST00000371372	r.?	-	-	Del	intronic	D	140824420	140824430	1	15	324.836	-	-	9	1	1	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	2	4	4	32	28	32	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575572	9	140903412	AC	A	300	PASS	CACNA1B	ENST00000371372	r.?	-	-	Del	intronic	D	140903412	140903418	1	12	270.697	-	-	5	1	1	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	4	4	32	20	32	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575577	9	140931093	AT	A	360	PASS	CACNA1B	ENST00000371372	r.?	-	-	Del	intronic	D	140931093	140931102	1	15	324.836	-	-	8	1	1	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	4	2	4	2	26	27	26	27	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575638	9	141071868	TAA	T	269	PASS	-	-	-	-	-	Del	-	D	141071868	141071872	2	24	431.309	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	5	4	6	43	46	43	46	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575714	X	2778179	GT	G	569	PASS	GYG2	CCDS14121.1	r.?	-	-	Del	intronic	D	2778179	2778189	1	32	539.272	-	-	9	1	1	GYG2|CCDS14121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GYG2|CCDS14121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	3	7	5	8	24	32	24	32	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760575852	X	3132487	GAT	G	869	PASS	-	-	-	-	-	Del	-	D	3132487	3132491	2	66	804.092	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	10	6	11	25	24	25	24	6	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576009	X	3605726	TA	T	300	PASS	PRKX	CCDS14125.1	r.?	-	-	Del	intronic	D	3605726	3605736	1	12	270.84	-	-	9	1	1	PRKX|CCDS14125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKX|CCDS14125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	3	4	5	30	26	30	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576113	X	3909100	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	3909100	3909109	1	12	318.386	-	-	8	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	1	5	1	7	22	36	22	36	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576522	X	5194497	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	5194497	5194505	1	15	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	2	4	3	5	29	28	29	28	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576580	X	5463926	CT	C	300	PASS	-	-	-	-	-	Del	-	D	5463926	5463936	1	12	266.024	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	3	23	23	23	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576703	X	5827687	T	TG	300	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Ins	intronic	I	5827687	5827697	1	10	267.83	-	-	9	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	6	1	26	17	26	17	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576711	X	5853149	GA	G	300	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	5853149	5853157	1	12	270.238	-	-	7	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	3	8	26	8	26	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576720	X	5884449	GT	G	300	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	5884449	5884457	1	12	270.84	-	-	7	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	3	2	21	23	21	23	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576789	X	6087865	GA	G	300	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	6087865	6087875	1	6	270.84	-	-	9	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	0	5	1	7	20	26	20	26	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576799	X	6109903	TA	T	577	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	6109903	6109913	1	35	540.477	-	-	9	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	6	4	8	4	31	29	31	29	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576880	X	6407213	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	6407213	6407220	1	6	267.83	-	-	6	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	0	5	2	5	12	23	12	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760576897	X	6455343	TC	T	360	PASS	VCX3A	CCDS35199.1	r.?	-	-	Del	upstream	D	6455343	6455351	1	16	324.406	-	-	7	1	1	VCX3A|CCDS35199.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	VCX3A|CCDS35199.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	9	7	9	0	0	./.	3	3	4	4	23	24	23	24	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577093	X	7205281	GA	G	600	PASS	STS	CCDS14127.1	r.?	-	-	Del	intronic	D	7205281	7205291	1	35	541.681	-	-	9	1	1	STS|CCDS14127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STS|CCDS14127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	6	4	6	6	28	28	28	28	6	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577126	X	7371305	AT	A	306	PASS	-	-	-	-	-	Del	-	D	7371305	7371315	1	16	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	4	3	30	14	30	14	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577140	X	7400493	AC	A	360	PASS	-	-	-	-	-	Del	-	D	7400493	7400495	1	15	323.804	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	4	2	4	16	22	16	22	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577248	X	8214344	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	8214344	8214352	1	20	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	8	15	9	15	0	0	./.	4	3	5	3	26	14	26	14	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577292	X	8322549	AT	A	300	PASS	ENSG00000227978	ENST00000418307	r.?	-	-	Del	intronic	D	8322549	8322556	1	10	270.84	-	-	6	1	1	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	4	1	5	2	26	15	26	15	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577384	X	8682771	GA	G	360	PASS	KAL1	CCDS14130.1	r.?	-	-	Del	intronic	D	8682771	8682780	1	15	325.008	-	-	8	1	1	KAL1|CCDS14130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KAL1|CCDS14130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	6	3	39	31	39	31	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577387	X	8691785	C	CT	449	PASS	KAL1	CCDS14130.1	r.?	-	-	Ins	intronic	I	8691785	8691792	1	24	428.528	-	-	6	1	1	KAL1|CCDS14130.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KAL1|CCDS14130.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	5	3	6	4	25	25	26	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577448	X	9063405	TA	T	360	PASS	-	-	-	-	-	Del	-	D	9063405	9063415	1	12	323.202	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	1	5	2	7	19	30	19	30	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577450	X	9076820	GA	G	420	PASS	-	-	-	-	-	Del	-	D	9076820	9076828	1	20	368.339	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	4	3	26	30	26	30	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577462	X	9156249	TA	T	480	PASS	-	-	-	-	-	Del	-	D	9156249	9156258	1	25	430.334	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	4	6	4	36	20	36	20	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577493	X	9244488	TC	T	360	PASS	-	-	-	-	-	Del	-	D	9244488	9244498	1	12	320.192	-	-	9	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	5	1	5	1	14	10	14	10	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577702	X	9848759	GT	G	480	PASS	SHROOM2	CCDS14135.1	r.?	-	-	Del	intronic	D	9848759	9848768	1	24	433.345	-	-	8	1	1	SHROOM2|CCDS14135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHROOM2|CCDS14135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	3	5	3	7	27	31	27	31	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577764	X	10042492	AT	A	389	PASS	WWC3	CCDS14136.1	r.?	-	-	Del	intronic	D	10042492	10042498	1	20	379.176	-	-	5	1	1	WWC3|CCDS14136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWC3|CCDS14136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	4	4	23	25	23	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577767	X	10054769	AT	A	660	PASS	WWC3	CCDS14136.1	r.?	-	-	Del	intronic	D	10054769	10054779	1	42	594.043	-	-	9	1	1	WWC3|CCDS14136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWC3|CCDS14136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	6	5	8	6	41	21	41	21	8	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577802	X	10229907	GT	G	449	PASS	-	-	-	-	-	Del	-	D	10229907	10229917	1	21	418.895	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	6	2	6	5	19	21	19	21	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577877	X	10605260	CA	C	300	PASS	MID1	CCDS14138.1	r.?	-	-	Del	intronic	D	10605260	10605269	1	10	270.84	-	-	8	1	1	MID1|CCDS14138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MID1|CCDS14138.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	2	10	2	0	0	./.	1	4	1	5	13	21	13	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760577941	X	11118516	CT	C	449	PASS	-	-	-	-	-	Del	-	D	11118516	11118526	1	21	433.345	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	2	8	4	29	22	29	22	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578102	X	11922073	AT	A	360	PASS	-	-	-	-	-	Del	-	D	11922073	11922082	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	7	3	36	26	36	26	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578119	X	11973021	CA	C	329	PASS	-	-	-	-	-	Del	-	D	11973021	11973031	1	15	309.355	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	4	4	25	28	25	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578212	X	12377116	CT	C	360	PASS	FRMPD4	CCDS35201.1	r.?	-	-	Del	intronic	D	12377116	12377126	1	16	325.008	-	-	9	1	1	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	4	8	11	26	11	26	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578287	X	12636768	GA	G	900	PASS	FRMPD4	CCDS35201.1	r.?	-	-	Del	intronic	D	12636768	12636778	1	72	811.919	-	-	9	1	1	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	8	7	11	9	30	25	30	25	11	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578316	X	12738852	AG	A	360	PASS	FRMPD4	CCDS35201.1	r.4676delG	c.?	p.?	Del	3'UTR variant	D	12738852	12738859	1	16	325.008	-	-	6	1	1	FRMPD4|CCDS35201.1|r.4676delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FRMPD4|ENST00000429478|r.4144delG|c.4144delG|p.S1384fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	5	3	18	21	18	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578493	X	13294924	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	13294924	13294931	1	12	321.396	-	-	6	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	5	1	6	3	22	28	22	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578603	X	13710429	TA	T	480	PASS	RAB9A	CCDS14156.1	r.?	-	-	Del	intronic	D	13710429	13710437	1	25	428.528	-	-	7	1	1	RAB9A|CCDS14156.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAB9A|CCDS14156.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	4	6	8	23	21	23	21	6	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578709	X	13956957	A	AC	389	PASS	GPM6B	CCDS48084.1	r.?	-	-	Ins	upstream	I	13956957	13956965	1	20	373.758	-	-	7	1	1	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	8	8	8	8	0	0	./.	3	4	3	6	30	24	30	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578766	X	14158729	CT	C	420	PASS	-	-	-	-	-	Del	-	D	14158729	14158737	1	18	379.176	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	2	5	2	35	19	35	19	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578825	X	14490480	CT	C	360	PASS	-	-	-	-	-	Del	-	D	14490480	14490490	1	15	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	3	5	28	30	28	30	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578829	X	14531689	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	14531689	14531697	1	28	481.492	-	-	7	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	3	6	3	25	19	26	19	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578849	X	14620540	CT	C	300	PASS	GLRA2	CCDS48085.1	r.?	-	-	Del	intronic	D	14620540	14620550	1	12	270.84	-	-	9	1	1	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	2	3	3	3	22	32	22	32	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578853	X	14631855	GT	G	480	PASS	GLRA2	CCDS48085.1	r.?	-	-	Del	intronic	D	14631855	14631864	1	21	433.345	-	-	8	1	1	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	6	2	7	2	24	17	24	17	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578856	X	14643854	AT	A	509	PASS	GLRA2	CCDS48085.1	r.?	-	-	Del	intronic	D	14643854	14643861	1	28	487.513	-	-	6	1	1	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	6	3	8	3	30	21	30	21	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578874	X	14837488	GA	G	480	PASS	-	-	-	-	-	Del	-	D	14837488	14837498	1	24	433.345	-	-	9	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	5	3	5	4	28	21	28	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760578876	X	14853780	GA	G	360	PASS	-	-	-	-	-	Del	-	D	14853780	14853789	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	2	4	2	5	23	22	23	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579002	X	15392831	GA	G	420	PASS	FIGF	CCDS14166.1	r.?	-	-	Del	intronic	D	15392831	15392838	1	14	379.176	-	-	6	1	1	FIGF|CCDS14166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FIGF|CCDS14166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	6	3	7	15	38	15	38	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579148	X	15855024	CA	C	420	PASS	AP1S2	CCDS14173.1	r.?	-	-	Del	intronic	D	15855024	15855033	1	20	379.176	-	-	8	1	1	AP1S2|CCDS14173.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP1S2|CCDS14173.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	4	3	5	3	30	20	30	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579243	X	16365921	AT	A	360	PASS	-	-	-	-	-	Del	-	D	16365921	16365931	1	12	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	1	5	2	5	23	28	23	28	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579351	X	16738052	AG	A	358	PASS	SYAP1	CCDS14177.1	r.?	-	-	Del	intronic	D	16738052	16738061	1	20	377.972	-	-	8	1	1	SYAP1|CCDS14177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYAP1|CCDS14177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	4	5	6	23	26	23	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579410	X	16903826	CA	C	840	PASS	-	-	-	-	-	Del	-	D	16903826	16903834	1	63	749.924	-	-	7	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	8	6	10	6	28	17	28	17	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579467	X	17052193	CT	C	360	PASS	REPS2	CCDS14180.2	r.?	-	-	Del	intronic	D	17052193	17052203	1	7	324.406	-	-	9	1	1	REPS2|CCDS14180.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	REPS2|CCDS14180.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	0	6	0	6	0	26	0	26	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579497	X	17170314	CT	C	360	PASS	REPS2	CCDS14180.2	r.6865delU	c.?	p.?	Del	3'UTR variant	D	17170314	17170319	1	15	325.008	-	-	4	1	1	REPS2|CCDS14180.2|r.6865delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	REPS2|CCDS14180.2|r.6865delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	3	4	19	22	19	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579607	X	17766631	CT	C	300	PASS	SCML1	CCDS14182.2	r.?	-	-	Del	intronic	D	17766631	17766641	1	12	270.84	-	-	9	1	1	SCML1|CCDS14182.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCML1|CCDS14182.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	3	3	21	21	21	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579647	X	18064380	GT	G	389	PASS	-	-	-	-	-	Del	-	D	18064380	18064388	1	20	379.176	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	4	7	21	16	21	16	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579715	X	18322654	TA	T	360	PASS	SCML2	CCDS14185.1	r.?	-	-	Del	intronic	D	18322654	18322660	1	12	324.406	-	-	5	1	1	SCML2|CCDS14185.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCML2|CCDS14185.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	1	5	3	5	24	26	24	26	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579932	X	18952801	CT	C	420	PASS	PHKA2	CCDS14190.1	r.?	-	-	Del	intronic	D	18952801	18952808	1	18	378.574	-	-	6	1	1	PHKA2|CCDS14190.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHKA2|CCDS14190.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	2	5	3	7	28	34	28	34	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760579989	X	19229187	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	19229187	19229195	1	10	263.014	-	-	7	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	4	1	4	16	34	16	34	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580038	X	19433196	TA	T	360	PASS	MAP3K15	CCDS35212.1	r.?	-	-	Del	intronic	D	19433196	19433206	1	15	325.008	-	-	9	1	1	MAP3K15|CCDS35212.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP3K15|CCDS35212.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	4	2	5	7	24	27	24	27	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580091	X	19589117	A	AT	540	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Ins	intronic	I	19589117	19589123	1	24	479.686	-	-	5	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	2	7	3	7	20	30	21	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580152	X	19894734	TA	T	360	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Del	intronic	D	19894734	19894741	1	16	325.008	-	-	6	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	4	3	33	44	33	44	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580155	X	19908075	AT	A	360	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Del	upstream	D	19908075	19908084	1	16	325.008	-	-	8	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	15	8	15	0	0	./.	3	3	4	3	25	20	25	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580326	X	20958263	AT	A	300	PASS	-	-	-	-	-	Del	-	D	20958263	20958273	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	4	6	39	35	39	35	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580361	X	21073639	GA	G	480	PASS	-	-	-	-	-	Del	-	D	21073639	21073645	1	16	433.345	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	1	7	1	7	10	28	10	28	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580374	X	21216257	TA	T	360	PASS	-	-	-	-	-	Del	-	D	21216257	21216266	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	2	4	4	6	21	31	21	31	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580376	X	21249920	CA	C	276	PASS	-	-	-	-	-	Del	-	D	21249920	21249928	1	12	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	4	2	26	24	26	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580388	X	21358423	AC	A	285	PASS	-	-	-	-	-	Del	-	D	21358423	21358430	1	12	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	4	3	27	26	27	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580414	X	21661913	CT	C	540	PASS	CNKSR2	CCDS14198.1	r.?	-	-	Del	intronic	D	21661913	21661923	1	28	485.706	-	-	9	1	1	CNKSR2|CCDS14198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNKSR2|CCDS14198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	6	3	6	5	17	18	17	18	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580452	X	21860708	G	GC	360	PASS	MBTPS2	CCDS14201.1	r.?	-	-	Ins	intronic	I	21860708	21860717	1	15	321.396	-	-	8	1	1	MBTPS2|CCDS14201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBTPS2|CCDS14201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	13	0	0	./.	2	4	4	5	12	22	12	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580652	X	22408752	CT	C	300	PASS	-	-	-	-	-	Del	-	D	22408752	22408757	1	10	270.84	-	-	4	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	1	4	1	5	26	29	26	29	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580721	X	22623030	GA	G	360	PASS	-	-	-	-	-	Del	-	D	22623030	22623038	1	15	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	4	2	4	19	18	19	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760580954	X	23660384	AAC	A	360	PASS	-	-	-	-	-	Del	-	D	23660384	23660402	2	16	325.008	-	-	8	1	-	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	3	3	4	3	11	19	11	19	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581172	X	24069382	GT	G	271	PASS	EIF2S3	CCDS14210.1	r.?	-	-	Del	upstream	D	24069382	24069392	1	10	269.636	-	-	9	1	1	EIF2S3|CCDS14210.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EIF2S3|CCDS14210.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	10	15	10	0	0	./.	1	4	4	5	27	30	27	30	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581510	X	25184384	TA	T	420	PASS	-	-	-	-	-	Del	-	D	25184384	25184393	1	14	379.176	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	1	6	2	6	10	17	10	17	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581546	X	25423398	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	25423398	25423402	1	15	321.396	-	-	3	1	1	-	-	./.	0	0	0	0	15	12	15	13	0	0	./.	2	4	2	4	14	22	14	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581597	X	25680834	AT	A	540	PASS	-	-	-	-	-	Del	-	D	25680834	25680841	1	30	487.513	-	-	6	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	7	4	29	19	29	19	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581669	X	25913968	AG	A	662	PASS	-	-	-	-	-	Del	-	D	25913968	25913974	1	48	649.415	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	7	6	7	25	27	25	27	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581816	X	26744429	TAGAG	T	269	PASS	-	-	-	-	-	Del	-	D	26744429	26744441	4	10	270.84	-	-	5	1	-	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	1	4	2	5	22	37	22	37	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760581837	X	26875100	TTC	T	600	PASS	-	-	-	-	-	Del	-	D	26875100	26875119	2	32	540.477	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	7	4	8	29	31	29	31	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582013	X	27517043	C	CTA	300	PASS	-	-	-	-	-	Ins	-	I	27517043	27517051	2	12	264.82	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	4	3	30	27	30	27	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582075	X	27846473	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	27846473	27846481	1	16	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	3	5	3	25	20	25	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582109	X	28121458	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	28121458	28121465	1	12	267.83	-	-	6	1	1	-	-	./.	0	0	0	0	15	19	16	19	0	0	./.	3	2	4	4	32	27	32	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582112	X	28140899	CT	C	360	PASS	-	-	-	-	-	Del	-	D	28140899	28140908	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	3	4	28	22	28	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582166	X	28339063	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	28339063	28339072	1	15	314.171	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	4	5	6	35	28	35	28	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582232	X	28610738	GT	G	360	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	28610738	28610744	1	15	325.008	-	-	5	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	2	4	2	23	19	23	19	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582281	X	28856767	CT	C	420	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	28856767	28856776	1	14	379.176	-	-	8	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	1	6	1	6	4	26	4	26	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582332	X	29023361	C	CA	420	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29023361	29023369	1	20	374.962	-	-	7	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	11	14	0	0	./.	4	3	4	6	26	25	26	25	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582347	X	29104464	C	CA	300	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29104464	29104468	1	12	267.83	-	-	3	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	3	2	3	3	16	23	16	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582475	X	29654194	C	CA	300	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29654194	29654204	1	12	267.83	-	-	9	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	3	2	7	2	36	7	36	7	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582518	X	29788463	CT	C	420	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	29788463	29788473	1	18	379.176	-	-	9	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	2	7	2	22	26	22	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582544	X	29940424	G	GA	420	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29940424	29940432	1	14	374.962	-	-	7	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	6	1	8	1	29	12	29	12	8	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582577	X	30053333	AT	A	420	PASS	-	-	-	-	-	Del	-	D	30053333	30053341	1	18	377.37	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	5	3	6	19	24	19	24	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582624	X	30264007	G	GT	360	PASS	MAGEB4	CCDS14221.1	r.?	-	-	Ins	downstream	I	30264007	30264015	1	12	321.396	-	-	7	1	1	MAGEB4|CCDS14221.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MAGEB1|CCDS14222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	5	1	6	3	21	33	22	33	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582655	X	30432894	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	30432894	30432903	1	15	320.192	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	3	4	19	29	19	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582706	X	30659757	T	TAC	540	PASS	-	-	-	-	-	Ins	-	I	30659757	30659769	2	28	476.073	-	-	5	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	5	7	27	34	27	34	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582867	X	31158435	CT	C	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	31158435	31158444	1	15	323.804	-	-	8	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	2	6	2	32	33	32	33	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582979	X	31545232	CA	C	480	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	31545232	31545241	1	21	433.345	-	-	8	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	13	3	13	0	0	./.	6	2	8	3	29	25	29	25	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760582999	X	31627251	CT	C	300	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	31627251	31627261	1	12	270.84	-	-	9	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	3	3	20	24	20	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583112	X	32097776	GA	G	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32097776	32097786	1	15	324.406	-	-	9	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	2	4	4	5	37	25	37	25	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583123	X	32152612	CT	C	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32152612	32152622	1	15	325.008	-	-	9	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	3	5	16	24	16	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583186	X	32386443	AT	A	480	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32386443	32386453	1	25	433.345	-	-	9	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	4	4	4	7	23	29	23	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583307	X	32916126	TA	T	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32916126	32916131	1	15	325.008	-	-	4	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	4	2	8	3	40	13	40	13	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583358	X	33107644	CA	C	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	33107644	33107654	1	16	323.804	-	-	9	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	4	3	13	21	13	21	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583415	X	33291027	A	AT	480	PASS	DMD	ENST00000288447	r.?	-	-	Ins	intronic	I	33291027	33291031	1	16	426.12	-	-	3	1	1	DMD|ENST00000288447|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|ENST00000288447|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	7	1	10	2	43	24	43	25	10	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583527	X	33842725	GT	G	300	PASS	-	-	-	-	-	Del	-	D	33842725	33842734	1	10	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	1	7	2	32	11	32	11	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583608	X	34353083	AT	A	420	PASS	-	-	-	-	-	Del	-	D	34353083	34353091	1	14	379.176	-	-	7	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	6	1	7	3	27	10	27	10	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583618	X	34403061	TA	T	360	PASS	-	-	-	-	-	Del	-	D	34403061	34403070	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	2	4	2	6	16	16	16	16	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583667	X	34600323	TA	T	360	PASS	-	-	-	-	-	Del	-	D	34600323	34600333	1	16	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	3	4	4	17	14	17	14	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583671	X	34634108	CA	C	360	PASS	-	-	-	-	-	Del	-	D	34634108	34634117	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	3	3	4	4	22	19	22	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583683	X	34683177	TC	T	360	PASS	-	-	-	-	-	Del	-	D	34683177	34683183	1	15	325.008	-	-	5	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	2	4	2	23	24	23	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583691	X	34742869	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	34742869	34742878	1	10	267.228	-	-	8	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	1	4	2	35	11	35	11	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583694	X	34754923	GT	G	809	PASS	-	-	-	-	-	Del	-	D	34754923	34754933	1	60	758.353	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	9	9	9	34	35	34	35	9	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583895	X	35791359	GA	G	420	PASS	-	-	-	-	-	Del	-	D	35791359	35791367	1	20	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	4	3	21	13	21	13	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583918	X	35914514	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	35914514	35914521	1	20	374.962	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	3	6	3	33	26	33	26	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760583966	X	36186690	AT	A	360	PASS	-	-	-	-	-	Del	-	D	36186690	36186700	1	16	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	4	4	18	18	18	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584098	X	36916741	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	36916741	36916747	1	10	267.228	-	-	5	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	4	2	25	24	25	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584116	X	36987938	AT	A	360	PASS	-	-	-	-	-	Del	-	D	36987938	36987944	1	15	325.008	-	-	5	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	4	2	4	3	25	17	25	17	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584128	X	37164776	GT	G	679	PASS	-	-	-	-	-	Del	-	D	37164776	37164786	1	49	650.017	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	6	6	9	10	28	36	28	36	9	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584134	X	37207062	CAT	C	300	PASS	PRRG1	CCDS14239.1	r.?	-	-	Del	upstream	D	37207062	37207067	2	10	270.84	-	-	2	1	1	PRRG1|CCDS14239.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PRRG1|CCDS14239.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	1	5	26	31	26	31	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584234	X	37913442	AT	A	449	PASS	SYTL5	CCDS14244.1	r.?	-	-	Del	intronic	D	37913442	37913451	1	25	431.538	-	-	8	1	1	SYTL5|CCDS14244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYTL5|CCDS14244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	4	4	5	22	24	22	24	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584362	X	38480931	CT	C	300	PASS	TSPAN7	CCDS14248.1	r.?	-	-	Del	intronic	D	38480931	38480940	1	12	270.84	-	-	8	1	1	TSPAN7|CCDS14248.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSPAN7|CCDS14248.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	3	2	3	2	13	27	13	27	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584615	X	39839235	TG	T	360	PASS	-	-	-	-	-	Del	-	D	39839235	39839240	1	12	323.202	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	1	5	1	25	17	25	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584726	X	40125134	GC	G	360	PASS	-	-	-	-	-	Del	-	D	40125134	40125143	1	16	321.396	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	5	3	18	24	18	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760584912	X	40749112	T	TAC	300	PASS	-	-	-	-	-	Ins	-	I	40749112	40749132	2	6	264.82	-	-	9	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	5	0	6	1	25	19	26	19	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585250	X	41630105	GA	G	360	PASS	CASK	CCDS48095.1	r.?	-	-	Del	intronic	D	41630105	41630115	1	7	325.008	-	-	9	1	1	CASK|CCDS48095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASK|CCDS48095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	6	0	6	1	28	6	28	6	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585261	X	41683447	GA	G	360	PASS	CASK	CCDS48095.1	r.?	-	-	Del	intronic	D	41683447	41683456	1	15	325.008	-	-	8	1	1	CASK|CCDS48095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASK|CCDS48095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	2	7	2	28	26	28	26	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585310	X	41859841	CT	C	389	PASS	-	-	-	-	-	Del	-	D	41859841	41859847	1	18	379.176	-	-	5	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	5	2	6	4	32	27	32	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585317	X	41897495	TA	T	269	PASS	-	-	-	-	-	Del	-	D	41897495	41897505	1	6	270.238	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	0	5	0	5	2	31	2	31	0	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585319	X	41903245	CT	C	629	PASS	-	-	-	-	-	Del	-	D	41903245	41903255	1	30	593.44	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	9	2	10	28	38	28	38	2	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585338	X	42002180	TA	T	420	PASS	-	-	-	-	-	Del	-	D	42002180	42002189	1	20	379.176	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	3	4	5	25	16	25	16	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585373	X	42200855	AT	A	298	PASS	-	-	-	-	-	Del	-	D	42200855	42200864	1	15	321.396	-	-	8	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	2	4	3	28	23	28	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585392	X	42331152	TG	T	689	PASS	-	-	-	-	-	Del	-	D	42331152	42331154	1	24	644.598	-	-	1	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	1	11	1	11	21	29	21	29	1	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585445	X	42672864	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	42672864	42672871	1	12	267.83	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	3	2	4	2	29	20	29	20	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585486	X	42806941	TA	T	360	PASS	-	-	-	-	-	Del	-	D	42806941	42806950	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	2	4	2	4	28	23	28	23	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585522	X	42977008	CT	C	420	PASS	-	-	-	-	-	Del	-	D	42977008	42977017	1	18	377.972	-	-	8	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	2	5	3	7	14	35	14	35	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585581	X	43339252	GT	G	480	PASS	-	-	-	-	-	Del	-	D	43339252	43339261	1	24	432.742	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	5	3	5	23	35	23	35	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585631	X	43470263	TTGTC	T	358	PASS	-	-	-	-	-	Del	-	D	43470263	43470271	4	20	379.176	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	4	5	27	21	27	21	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585633	X	43476976	CA	C	300	PASS	-	-	-	-	-	Del	-	D	43476976	43476986	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	3	4	17	17	17	17	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585706	X	43970490	AT	A	420	PASS	-	-	-	-	-	Del	-	D	43970490	43970494	1	14	370.748	-	-	3	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	1	7	2	32	14	32	14	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585782	X	44263221	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	44263221	44263231	1	20	374.962	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	3	4	25	32	25	32	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585783	X	44273899	GT	G	360	PASS	-	-	-	-	-	Del	-	D	44273899	44273907	1	16	324.406	-	-	7	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	4	4	17	20	17	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760585999	X	44850337	CT	C	360	PASS	KDM6A	CCDS14265.1	r.?	-	-	Del	intronic	D	44850337	44850344	1	15	325.008	-	-	6	1	1	KDM6A|CCDS14265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDM6A|CCDS14265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	2	8	2	23	19	23	19	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586126	X	45569358	CCT	C	480	PASS	-	-	-	-	-	Del	-	D	45569358	45569374	2	25	432.742	-	-	7	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	4	4	5	5	27	19	27	19	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586172	X	45724491	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	45724491	45724500	1	12	321.396	-	-	8	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	5	1	7	1	34	23	34	23	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586233	X	46004417	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	46004417	46004425	1	18	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	2	5	2	5	12	22	12	22	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586471	X	46776191	AC	A	300	PASS	PHF16	CCDS14271.1	r.?	-	-	Del	intronic	D	46776191	46776197	1	10	270.84	-	-	5	1	1	PHF16|CCDS14271.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PHF16|CCDS14271.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	5	1	30	25	30	25	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586477	X	46794032	CT	C	480	PASS	PHF16	CCDS14271.1	r.?	-	-	Del	intronic	D	46794032	46794042	1	21	433.345	-	-	9	1	1	PHF16|CCDS14271.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PHF16|CCDS14271.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	6	5	8	10	29	10	29	5	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586599	X	47168134	CT	C	269	PASS	-	-	-	-	-	Del	-	D	47168134	47168144	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	1	6	23	21	23	21	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586746	X	47512679	GA	G	360	PASS	ELK1	CCDS14283.1	r.?	-	-	Del	upstream	D	47512679	47512688	1	15	325.008	-	-	8	1	1	ELK1|CCDS14283.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	UXT|CCDS14284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	6	2	37	21	37	21	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586787	X	47786095	TA	T	300	PASS	ZNF81	CCDS43933.1	r.?	-	-	Del	downstream	D	47786095	47786104	1	10	270.84	-	-	8	1	1	ZNF81|CCDS43933.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF81|ENST00000376950|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	6	1	28	7	28	7	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760586839	X	47973877	AG	A	352	PASS	SSX6	ENST00000304314	r.?	-	-	Del	intronic	D	47973877	47973883	1	18	379.176	-	-	5	1	1	SSX6|ENST00000304314|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSX6|ENST00000304314|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	5	2	8	2	27	15	27	15	8	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587105	X	48718215	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	48718215	48718224	1	25	428.528	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	4	6	5	28	34	28	34	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587133	X	48819729	T	TG	300	PASS	KCND1	CCDS14314.1	r.3354_3355insc	c.?	p.?	Ins	3'UTR variant	I	48819729	48819738	1	12	267.228	-	-	8	1	1	KCND1|CCDS14314.1|r.3354_3355insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	KCND1|CCDS14314.1|r.3354_3355insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	4	5	27	35	28	35	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587308	X	49683670	GT	G	540	PASS	CLCN5	CCDS14328.1	r.?	-	-	Del	upstream	D	49683670	49683680	1	30	487.513	-	-	9	1	1	CLCN5|CCDS14328.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CLCN5|CCDS14328.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	11	12	11	0	0	./.	4	5	6	5	30	26	30	26	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587328	X	49819352	A	AT	420	PASS	CLCN5	CCDS14328.1	r.?	-	-	Ins	intronic	I	49819352	49819361	1	18	372.554	-	-	8	1	1	CLCN5|CCDS14328.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CLCN5|CCDS14328.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	2	5	3	6	26	30	28	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587441	X	50505490	G	GT	540	PASS	SHROOM4	CCDS35277.1	r.?	-	-	Ins	intronic	I	50505490	50505499	1	24	482.094	-	-	8	1	1	SHROOM4|CCDS35277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SHROOM4|CCDS35277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	7	2	8	3	23	8	23	8	8	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587488	X	50711421	CT	C	360	PASS	-	-	-	-	-	Del	-	D	50711421	50711429	1	16	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	4	5	20	11	20	11	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587518	X	50890440	CA	C	300	PASS	-	-	-	-	-	Del	-	D	50890440	50890450	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	4	1	18	10	18	10	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587542	X	51019962	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	51019962	51019969	1	30	479.686	-	-	6	1	1	-	-	./.	0	0	0	0	4	11	4	12	0	0	./.	5	4	6	7	25	32	25	32	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587638	X	51533880	CT	C	360	PASS	-	-	-	-	-	Del	-	D	51533880	51533888	1	12	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	5	1	6	1	18	13	18	13	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587666	X	51637595	AG	A	360	PASS	MAGED1	CCDS35279.1	r.?	-	-	Del	intronic	D	51637595	51637603	1	7	325.008	-	-	7	1	1	MAGED1|CCDS35279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGED1|CCDS35279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	0	6	1	8	14	25	14	25	1	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587809	X	52886648	CA	C	480	PASS	XAGE3	CCDS14347.1	r.?	-	-	Del	downstream	D	52886648	52886658	1	21	430.936	-	-	9	1	1	XAGE3|CCDS14347.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	XAGE3|CCDS14347.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	6	9	6	0	0	./.	2	6	5	9	22	28	22	28	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587825	X	52952917	CA	C	300	PASS	-	-	-	-	-	Del	-	D	52952917	52952923	1	12	270.84	-	-	5	1	1	-	-	./.	0	0	0	0	20	8	20	8	0	0	./.	3	2	4	5	17	39	17	39	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587870	X	53109593	AT	A	600	PASS	GPR173	CCDS14349.1	r.3894delU	c.?	p.?	Del	3'UTR variant	D	53109593	53109603	1	35	541.681	-	-	9	1	1	GPR173|CCDS14349.1|r.3894delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GPR173|CCDS14349.1|r.3894delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	9	12	9	0	0	./.	4	6	8	7	24	33	24	33	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587885	X	53150663	GT	G	360	PASS	-	-	-	-	-	Del	-	D	53150663	53150671	1	12	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	1	7	3	29	30	29	30	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760587894	X	53163558	AT	A	300	PASS	-	-	-	-	-	Del	-	D	53163558	53163564	1	12	265.422	-	-	5	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	3	2	4	2	28	39	28	39	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588208	X	54160481	TA	T	480	PASS	FAM120C	CCDS14356.1	r.1674-3delu	c.1617-3delt	p.?	Del	splice region	D	54160481	54160488	1	25	433.345	-	-	6	1	1	FAM120C|CCDS14356.1|r.1674-3delu|c.1617-3delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	FAM120C|CCDS14356.1|r.1674-3delu|c.1617-3delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	11	12	11	12	0	0	./.	4	4	6	5	24	20	24	20	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588373	X	54624002	GC	G	300	PASS	-	-	-	-	-	Del	-	D	54624002	54624010	1	12	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	5	4	25	25	25	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588386	X	54666470	AG	A	360	PASS	-	-	-	-	-	Del	-	D	54666470	54666476	1	15	323.804	-	-	5	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	4	2	5	24	27	24	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588393	X	54706526	TA	T	360	PASS	-	-	-	-	-	Del	-	D	54706526	54706534	1	12	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	5	1	7	2	32	19	32	19	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588401	X	54770183	GT	G	300	PASS	-	-	-	-	-	Del	-	D	54770183	54770193	1	12	270.238	-	-	9	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	3	2	3	2	23	25	23	25	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588409	X	54807907	GA	G	360	PASS	ITIH5L	CCDS14361.1	r.?	-	-	Del	intronic	D	54807907	54807915	1	15	325.008	-	-	7	1	1	ITIH5L|CCDS14361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITIH5L|CCDS14361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	15	25	15	0	0	./.	2	4	2	4	22	24	22	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588423	X	54895947	CT	C	360	PASS	-	-	-	-	-	Del	-	D	54895947	54895956	1	7	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	4	16	4	16	0	0	./.	6	0	6	0	29	1	29	1	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588431	X	54959025	C	CA	577	PASS	TRO	CCDS43959.1	r.?	-	-	Ins	downstream	I	54959025	54959035	1	36	530.242	-	-	9	1	1	TRO|CCDS43959.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TRO|CCDS43959.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	15	17	15	17	0	0	./.	5	5	5	6	29	24	30	24	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588555	X	55662897	GT	G	300	PASS	-	-	-	-	-	Del	-	D	55662897	55662906	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	4	4	30	19	30	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588692	X	56208221	CT	C	720	PASS	-	-	-	-	-	Del	-	D	56208221	56208223	1	33	646.404	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	10	7	10	23	37	23	37	7	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588809	X	56769694	GT	G	300	PASS	-	-	-	-	-	Del	-	D	56769694	56769704	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	4	3	25	26	25	26	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588908	X	57178299	GT	G	372	PASS	-	-	-	-	-	Del	-	D	57178299	57178306	1	48	650.017	-	-	6	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	7	5	10	6	34	36	34	36	10	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760588916	X	57214928	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	57214928	57214937	1	10	267.83	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	4	3	5	25	23	27	23	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589017	X	57626977	AT	A	300	PASS	ZXDB	CCDS35313.1	r.?	-	-	Del	downstream	D	57626977	57626985	1	12	270.84	-	-	7	1	1	ZXDB|CCDS35313.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL031115.1|ENST00000506499|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	4	4	23	18	23	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589082	X	58053207	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	58053207	58053215	1	18	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	2	5	5	21	24	21	24	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589084	X	58067231	AC	A	660	PASS	-	-	-	-	-	Del	-	D	58067231	58067239	1	42	592.838	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	6	5	8	5	21	25	21	25	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589093	X	58173234	GA	G	360	PASS	-	-	-	-	-	Del	-	D	58173234	58173244	1	15	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	5	5	23	20	23	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589101	X	58210454	CT	C	300	PASS	-	-	-	-	-	Del	-	D	58210454	58210463	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	3	24	30	24	30	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589108	X	58299736	GA	G	300	PASS	-	-	-	-	-	Del	-	D	58299736	58299744	1	6	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	5	0	10	0	32	23	32	23	10	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589125	X	58438872	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	58438872	58438879	1	16	321.396	-	-	6	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	3	9	6	33	33	33	33	9	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589232	X	61926605	CA	C	540	PASS	-	-	-	-	-	Del	-	D	61926605	61926612	1	30	487.513	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	5	5	5	27	26	27	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589242	X	61970419	CA	C	360	PASS	-	-	-	-	-	Del	-	D	61970419	61970428	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	3	6	4	29	27	29	27	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589264	X	62169914	CA	C	488	PASS	-	-	-	-	-	Del	-	D	62169914	62169924	1	24	486.308	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	7	3	9	15	35	15	35	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589335	X	62790409	TA	T	300	PASS	-	-	-	-	-	Del	-	D	62790409	62790416	1	10	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	1	4	1	5	6	24	6	24	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589346	X	62919089	CT	C	300	PASS	ARHGEF9	CCDS35315.1	r.?	-	-	Del	intronic	D	62919089	62919098	1	12	264.82	-	-	8	1	1	ARHGEF9|CCDS35315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF9|CCDS35315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	5	4	26	20	26	20	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589361	X	63065867	C	CAT	480	PASS	-	-	-	-	-	Ins	-	I	63065867	63065880	2	24	423.712	-	-	6	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	5	3	6	29	28	29	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589439	X	63674021	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	63674021	63674029	1	20	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	4	4	4	20	30	20	30	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589500	X	64228083	CA	C	420	PASS	ZC4H2	ENST00000337990	r.?	-	-	Del	intronic	D	64228083	64228093	1	18	379.176	-	-	9	1	1	ZC4H2|ENST00000337990|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZC4H2|ENST00000337990|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	5	2	5	24	20	24	20	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589548	X	64515789	TA	T	300	PASS	-	-	-	-	-	Del	-	D	64515789	64515799	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	5	1	33	11	33	11	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589551	X	64524193	CA	C	300	PASS	-	-	-	-	-	Del	-	D	64524193	64524203	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	4	1	6	9	29	31	29	31	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589552	X	64528198	CA	C	360	PASS	-	-	-	-	-	Del	-	D	64528198	64528207	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	4	2	5	2	25	9	25	9	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589590	X	64740281	C	CA	420	PASS	LAS1L	CCDS14381.1	r.?	-	-	Ins	intronic	I	64740281	64740289	1	20	371.952	-	-	7	1	1	LAS1L|CCDS14381.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LAS1L|CCDS14381.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	14	13	0	0	./.	3	4	5	6	31	24	31	25	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589624	X	64883202	GA	G	420	PASS	MSN	CCDS14382.1	r.?	-	-	Del	upstream	D	64883202	64883212	1	18	379.176	-	-	9	1	1	MSN|CCDS14382.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MSN|CCDS14382.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	22	13	22	0	0	./.	2	5	3	5	28	19	28	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589642	X	65041155	CT	C	480	PASS	-	-	-	-	-	Del	-	D	65041155	65041163	1	24	433.345	-	-	7	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	5	6	5	32	23	32	23	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589694	X	65332309	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	65332309	65332316	1	16	320.794	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	3	6	15	31	15	31	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589718	X	65460740	G	GA	300	PASS	HEPH	CCDS14384.2	r.?	-	-	Ins	intronic	I	65460740	65460747	1	10	267.83	-	-	6	1	1	HEPH|CCDS14384.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HEPH|CCDS14384.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	14	5	14	0	0	./.	4	1	6	1	24	4	24	4	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589800	X	65808495	CT	C	329	PASS	-	-	-	-	-	Del	-	D	65808495	65808503	1	15	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	2	4	2	6	26	22	26	22	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589871	X	66225251	GA	G	360	PASS	-	-	-	-	-	Del	-	D	66225251	66225259	1	15	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	4	2	5	5	28	14	28	14	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589935	X	66609945	CA	C	600	PASS	-	-	-	-	-	Del	-	D	66609945	66609953	1	36	540.477	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	5	5	5	5	27	28	27	28	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589967	X	66832790	CT	C	780	PASS	AR	CCDS14387.1	r.?	-	-	Del	intronic	D	66832790	66832799	1	54	702.379	-	-	8	1	1	AR|CCDS14387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AR|CCDS14387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	8	6	9	19	40	19	40	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760589970	X	66868256	ACT	A	420	PASS	AR	CCDS14387.1	r.?	-	-	Del	intronic	D	66868256	66868263	2	20	379.176	-	-	3	1	1	AR|CCDS14387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AR|CCDS14387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	4	3	4	29	22	29	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590107	X	67535149	CAG	C	371	PASS	OPHN1	CCDS14388.1	r.?	-	-	Del	intronic	D	67535149	67535163	2	20	379.176	-	-	6	1	1	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	4	3	5	5	23	23	23	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590147	X	67649401	TA	T	360	PASS	OPHN1	CCDS14388.1	r.?	-	-	Del	intronic	D	67649401	67649410	1	15	325.008	-	-	8	1	1	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	4	3	4	32	29	32	29	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590258	X	68205482	TG	T	300	PASS	-	-	-	-	-	Del	-	D	68205482	68205489	1	12	264.218	-	-	6	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	3	2	13	13	13	13	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590292	X	68443364	GA	G	420	PASS	-	-	-	-	-	Del	-	D	68443364	68443373	1	20	377.972	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	4	3	7	4	36	27	36	27	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590347	X	68658029	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	68658029	68658033	1	6	267.83	-	-	3	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	0	5	0	28	1	28	1	5	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590393	X	68846713	GT	G	360	PASS	EDA	CCDS14394.1	r.?	-	-	Del	intronic	D	68846713	68846722	1	16	325.008	-	-	8	1	1	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	6	3	17	14	17	14	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590488	X	69162723	AT	A	480	PASS	EDA	CCDS14394.1	r.?	-	-	Del	intronic	D	69162723	69162731	1	24	433.345	-	-	7	1	1	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	5	3	29	24	29	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590499	X	69222832	C	CA	420	PASS	EDA	CCDS14394.1	r.?	-	-	Ins	intronic	I	69222832	69222838	1	20	374.962	-	-	5	1	1	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	4	5	28	33	28	33	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590624	X	69663361	G	GT	540	PASS	DLG3	CCDS14403.1	r.?	-	-	Ins	upstream	I	69663361	69663365	1	30	480.89	-	-	3	1	1	DLG3|CCDS14403.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	DLG3|CCDS14403.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	13	13	13	13	0	0	./.	5	4	5	4	26	24	26	24	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590700	X	69979162	C	CA	300	PASS	TEX11	CCDS35323.1	r.?	-	-	Ins	intronic	I	69979162	69979170	1	10	267.83	-	-	7	1	1	TEX11|CCDS35323.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TEX11|CCDS35323.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	4	1	4	1	39	30	39	30	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590766	X	70190616	TA	T	420	PASS	-	-	-	-	-	Del	-	D	70190616	70190623	1	18	379.176	-	-	6	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	2	5	3	6	18	28	18	28	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590779	X	70215748	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	70215748	70215758	1	20	374.962	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	3	5	4	15	29	15	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590790	X	70232747	AT	A	300	PASS	-	-	-	-	-	Del	-	D	70232747	70232757	1	6	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	15	0	0	./.	0	5	0	7	2	34	2	37	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590804	X	70275240	CA	C	420	PASS	SNX12	CCDS14405.1	r.?	-	-	Del	downstream	D	70275240	70275247	1	20	379.176	-	-	6	1	1	SNX12|CCDS14405.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SNX12|CCDS14405.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	6	5	26	21	26	21	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590893	X	70515337	CA	C	300	PASS	NONO	CCDS14410.1	r.?	-	-	Del	intronic	D	70515337	70515347	1	10	264.218	-	-	9	1	1	NONO|CCDS14410.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NONO|CCDS14410.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	4	1	4	2	29	25	29	25	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590942	X	70632281	AT	A	329	PASS	TAF1	CCDS35325.1	r.?	-	-	Del	intronic	D	70632281	70632291	1	16	325.008	-	-	9	1	1	TAF1|CCDS35325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAF1|CCDS35325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	3	3	4	4	35	19	35	19	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590980	X	70759212	AT	A	300	PASS	OGT	CCDS14414.1	r.?	-	-	Del	intronic	D	70759212	70759222	1	12	270.84	-	-	9	1	1	OGT|CCDS14414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OGT|CCDS14414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	3	4	23	22	23	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760590998	X	70821385	G	GT	420	PASS	ACRC	CCDS35326.1	r.?	-	-	Ins	intronic	I	70821385	70821395	1	20	372.554	-	-	9	1	-	ACRC|CCDS35326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACRC|CCDS35326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	3	7	21	32	21	32	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591221	X	71729605	CT	C	420	PASS	HDAC8	CCDS14420.1	r.?	-	-	Del	intronic	D	71729605	71729615	1	18	379.176	-	-	9	1	1	HDAC8|CCDS14420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC8|CCDS14420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	5	3	7	27	30	27	30	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591223	X	71737309	CT	C	300	PASS	HDAC8	CCDS14420.1	r.?	-	-	Del	intronic	D	71737309	71737319	1	12	270.84	-	-	9	1	1	HDAC8|CCDS14420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC8|CCDS14420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	4	2	23	21	23	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591250	X	71923364	CA	C	300	PASS	PHKA1	CCDS48137.1	r.?	-	-	Del	intronic	D	71923364	71923374	1	12	270.84	-	-	9	1	1	PHKA1|CCDS48137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHKA1|CCDS48137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	2	3	3	3	15	23	15	23	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591360	X	72612162	AT	A	720	PASS	-	-	-	-	-	Del	-	D	72612162	72612172	1	45	647.609	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	8	8	8	27	32	27	32	8	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591400	X	72901985	GA	G	660	PASS	CHIC1	CCDS35335.2	r.1898delA	c.?	p.?	Del	3'UTR variant	D	72901985	72901994	1	40	595.849	-	-	8	1	1	CHIC1|CCDS35335.2|r.1898delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CHIC1|CCDS35335.2|r.1898delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	15	13	15	0	0	./.	7	4	8	5	32	37	32	37	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591428	X	73042268	AT	A	540	PASS	-	-	-	-	-	Del	-	D	73042268	73042276	1	30	487.513	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	5	8	7	37	36	37	36	8	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591649	X	73797674	AT	A	300	PASS	-	-	-	-	-	Del	-	D	73797674	73797684	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	2	4	2	37	24	37	24	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591689	X	74023912	CA	C	600	PASS	KIAA2022	CCDS35337.1	r.?	-	-	Del	intronic	D	74023912	74023919	1	35	541.681	-	-	6	1	1	KIAA2022|CCDS35337.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA2022|CCDS35337.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	4	6	5	6	25	26	25	26	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591694	X	74072843	G	GT	480	PASS	KIAA2022	CCDS35337.1	r.?	-	-	Ins	intronic	I	74072843	74072852	1	24	428.528	-	-	8	1	1	KIAA2022|CCDS35337.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA2022|CCDS35337.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	3	5	36	21	36	21	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591773	X	74509056	CA	C	420	PASS	UPRT	CCDS14429.1	r.?	-	-	Del	intronic	D	74509056	74509064	1	18	379.176	-	-	7	1	1	UPRT|CCDS14429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UPRT|CCDS14429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	2	6	3	24	27	24	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591841	X	74824061	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	74824061	74824070	1	10	263.014	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	17	19	0	0	./.	4	1	6	2	29	30	29	30	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591928	X	75300065	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	75300065	75300073	1	12	264.82	-	-	7	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	2	3	2	4	28	27	28	27	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760591979	X	75516530	AT	A	480	PASS	-	-	-	-	-	Del	-	D	75516530	75516538	1	24	433.345	-	-	7	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	3	5	6	5	28	31	28	31	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592044	X	75860194	AT	A	300	PASS	-	-	-	-	-	Del	-	D	75860194	75860200	1	12	270.84	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	4	3	24	20	24	20	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592100	X	76250278	C	CT	337	PASS	-	-	-	-	-	Ins	-	I	76250278	76250287	1	15	320.794	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	2	4	5	5	32	32	32	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592119	X	76302796	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	76302796	76302806	1	10	266.024	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	9	12	0	0	./.	1	4	2	4	25	26	25	26	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592146	X	76442434	CA	C	300	PASS	-	-	-	-	-	Del	-	D	76442434	76442444	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	6	3	26	25	26	25	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592173	X	76546388	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	76546388	76546397	1	28	482.094	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	3	6	3	9	24	33	26	34	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592178	X	76573986	TG	T	296	PASS	-	-	-	-	-	Del	-	D	76573986	76573992	1	20	378.574	-	-	5	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	3	5	4	19	19	19	19	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592203	X	76733252	CA	C	360	PASS	-	-	-	-	-	Del	-	D	76733252	76733262	1	7	320.794	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	6	0	6	23	26	23	26	0	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592210	X	76778062	CT	C	360	PASS	ATRX	CCDS14434.1	r.?	-	-	Del	intronic	D	76778062	76778072	1	7	323.202	-	-	9	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	0	7	3	31	29	31	29	7	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592218	X	76822216	TA	T	300	PASS	ATRX	CCDS14434.1	r.?	-	-	Del	intronic	D	76822216	76822226	1	12	270.84	-	-	9	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	4	21	23	21	23	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592231	X	76900608	G	GA	360	PASS	ATRX	CCDS14434.1	r.?	-	-	Ins	intronic	I	76900608	76900618	1	16	321.396	-	-	9	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	17	0	0	./.	3	3	4	4	24	25	25	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592420	X	77647494	TA	T	420	PASS	-	-	-	-	-	Del	-	D	77647494	77647504	1	8	379.176	-	-	9	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	7	0	9	0	25	3	25	3	9	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592434	X	77709638	CA	C	420	PASS	-	-	-	-	-	Del	-	D	77709638	77709648	1	18	376.768	-	-	9	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	5	2	6	3	21	17	21	17	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592455	X	77796247	CT	C	360	PASS	-	-	-	-	-	Del	-	D	77796247	77796257	1	16	324.406	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	3	3	23	16	23	16	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592491	X	78045762	CA	C	420	PASS	-	-	-	-	-	Del	-	D	78045762	78045771	1	20	379.176	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	4	4	5	30	34	30	34	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592511	X	78143073	CA	C	358	PASS	-	-	-	-	-	Del	-	D	78143073	78143083	1	20	379.176	-	-	9	1	1	-	-	./.	0	0	0	0	25	10	25	10	0	0	./.	3	4	5	5	23	23	23	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592514	X	78151266	CT	C	360	PASS	-	-	-	-	-	Del	-	D	78151266	78151275	1	16	324.406	-	-	8	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	4	4	21	23	21	23	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592541	X	78287495	TG	T	420	PASS	-	-	-	-	-	Del	-	D	78287495	78287502	1	18	379.176	-	-	6	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	5	2	9	3	27	23	27	23	9	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592550	X	78324891	CA	C	360	PASS	-	-	-	-	-	Del	-	D	78324891	78324900	1	12	321.998	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	1	5	1	29	9	29	9	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592763	X	79027678	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	79027678	79027686	1	16	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	17	14	0	0	./.	3	3	3	3	19	19	19	19	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592933	X	79789333	TAC	T	329	PASS	-	-	-	-	-	Del	-	D	79789333	79789344	2	12	325.008	-	-	5	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	1	7	1	25	13	25	13	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760592983	X	80051507	GT	G	294	PASS	BRWD3	CCDS14447.1	r.?	-	-	Del	intronic	D	80051507	80051517	1	12	270.84	-	-	9	1	1	BRWD3|CCDS14447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRWD3|CCDS14447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	3	2	6	3	23	23	23	23	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593033	X	80254154	GA	G	360	PASS	-	-	-	-	-	Del	-	D	80254154	80254163	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	3	5	4	19	32	19	32	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593136	X	80688109	CA	C	277	PASS	-	-	-	-	-	Del	-	D	80688109	80688117	1	12	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	2	7	6	32	6	32	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593211	X	80947983	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	80947983	80947991	1	18	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	12	19	13	19	0	0	./.	5	2	6	3	22	28	22	28	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593219	X	81014201	CA	C	300	PASS	-	-	-	-	-	Del	-	D	81014201	81014210	1	10	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	5	2	19	31	19	31	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593255	X	81145671	GA	G	360	PASS	-	-	-	-	-	Del	-	D	81145671	81145679	1	15	324.406	-	-	7	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	4	2	4	3	26	23	26	23	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593294	X	81335538	CT	C	420	PASS	-	-	-	-	-	Del	-	D	81335538	81335547	1	14	378.574	-	-	8	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	1	6	1	6	15	35	15	35	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593493	X	82600232	GA	G	300	PASS	-	-	-	-	-	Del	-	D	82600232	82600241	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	3	2	5	2	32	13	32	13	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593500	X	82653944	CA	C	300	PASS	-	-	-	-	-	Del	-	D	82653944	82653954	1	12	269.636	-	-	9	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	2	3	3	4	26	21	26	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593533	X	82840300	GA	G	540	PASS	-	-	-	-	-	Del	-	D	82840300	82840308	1	28	487.513	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	3	7	4	23	11	23	11	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593608	X	83236878	CA	C	300	PASS	-	-	-	-	-	Del	-	D	83236878	83236888	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	7	1	20	11	20	11	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593609	X	83244848	G	GA	345	PASS	-	-	-	-	-	Ins	-	I	83244848	83244855	1	16	321.396	-	-	6	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	3	3	3	5	23	33	23	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593671	X	83641316	AT	A	360	PASS	HDX	CCDS35342.1	r.?	-	-	Del	intronic	D	83641316	83641325	1	12	325.008	-	-	8	1	1	HDX|CCDS35342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDX|CCDS35342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	1	7	1	26	24	26	24	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593682	X	83685858	C	CT	300	PASS	HDX	CCDS35342.1	r.?	-	-	Ins	intronic	I	83685858	83685867	1	10	267.83	-	-	8	1	1	HDX|CCDS35342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDX|CCDS35342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	8	17	8	0	0	./.	4	1	5	1	21	10	21	10	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593779	X	84048041	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	84048041	84048051	1	12	266.626	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	3	5	5	33	31	33	32	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593812	X	84144599	GA	G	277	PASS	-	-	-	-	-	Del	-	D	84144599	84144608	1	12	270.238	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	18	22	18	22	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593858	X	84338745	CT	C	420	PASS	APOOL	CCDS48138.1	r.?	-	-	Del	intronic	D	84338745	84338754	1	18	379.176	-	-	8	1	1	APOOL|CCDS48138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APOOL|CCDS48138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	2	6	3	28	20	28	20	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593864	X	84354279	CA	C	600	PASS	SATL1	CCDS35343.1	r.?	-	-	Del	intronic	D	84354279	84354288	1	36	541.681	-	-	8	1	1	SATL1|CCDS35343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SATL1|CCDS35343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	5	7	5	27	15	27	15	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593890	X	84618227	AT	A	420	PASS	POF1B	CCDS14452.1	r.?	-	-	Del	intronic	D	84618227	84618237	1	20	379.176	-	-	9	1	1	POF1B|CCDS14452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POF1B|CCDS14452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	4	4	5	34	23	34	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760593964	X	85047137	G	GA	274	PASS	-	-	-	-	-	Ins	-	I	85047137	85047144	1	16	321.396	-	-	6	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	3	6	4	27	25	27	25	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594043	X	85420665	AT	A	300	PASS	DACH2	CCDS48140.1	r.?	-	-	Del	intronic	D	85420665	85420673	1	6	270.84	-	-	7	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	0	5	1	7	9	22	9	22	1	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594044	X	85425196	A	ATC	480	PASS	DACH2	CCDS48140.1	r.?	-	-	Ins	intronic	I	85425196	85425210	2	25	423.712	-	-	6	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	5	4	24	22	24	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594082	X	85589612	GT	G	360	PASS	DACH2	CCDS48140.1	r.?	-	-	Del	intronic	D	85589612	85589620	1	12	325.008	-	-	7	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	9	23	9	0	0	./.	1	5	1	5	21	22	21	22	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594257	X	86366281	CA	C	300	PASS	-	-	-	-	-	Del	-	D	86366281	86366290	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	3	4	20	21	20	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594297	X	86457309	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	86457309	86457316	1	20	368.941	-	-	6	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	4	3	5	4	21	21	21	21	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594312	X	86484582	AT	A	300	PASS	-	-	-	-	-	Del	-	D	86484582	86484590	1	10	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	1	5	2	16	20	16	20	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594515	X	87378296	TG	T	300	PASS	-	-	-	-	-	Del	-	D	87378296	87378303	1	10	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	1	4	1	4	22	26	22	26	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594678	X	87891481	TA	T	300	PASS	-	-	-	-	-	Del	-	D	87891481	87891491	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	1	4	1	4	9	30	9	30	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594720	X	88068639	CA	C	420	PASS	-	-	-	-	-	Del	-	D	88068639	88068645	1	18	379.176	-	-	5	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	5	2	5	5	30	30	30	30	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594772	X	88274278	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	88274278	88274285	1	10	267.83	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	1	6	2	32	22	32	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594817	X	88440040	CT	C	300	PASS	-	-	-	-	-	Del	-	D	88440040	88440048	1	10	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	1	6	2	27	12	27	12	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760594953	X	88944635	G	GT	255	PASS	-	-	-	-	-	Ins	-	I	88944635	88944641	1	10	267.83	-	-	5	1	1	-	-	./.	0	0	0	0	18	10	19	10	0	0	./.	4	1	5	2	20	16	21	16	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595137	X	89814698	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	89814698	89814707	1	10	267.83	-	-	8	1	1	-	-	./.	0	0	0	0	20	13	21	13	0	0	./.	1	4	1	6	26	28	26	28	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595219	X	90343239	CT	C	300	PASS	-	-	-	-	-	Del	-	D	90343239	90343248	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	3	3	25	29	25	29	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595280	X	90659041	CA	C	360	PASS	-	-	-	-	-	Del	-	D	90659041	90659051	1	7	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	0	6	2	7	11	18	11	18	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595291	X	90697965	TA	T	360	PASS	PABPC5	CCDS14460.1	r.?	-	-	Del	downstream	D	90697965	90697974	1	7	324.406	-	-	8	1	1	PABPC5|CCDS14460.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PABPC5|CCDS14460.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	19	17	19	17	0	0	./.	6	0	6	0	9	1	9	1	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595499	X	91900748	CT	C	358	PASS	-	-	-	-	-	Del	-	D	91900748	91900756	1	14	379.176	-	-	7	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	1	6	1	11	2	34	2	34	1	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595509	X	91963559	GCT	G	420	PASS	-	-	-	-	-	Del	-	D	91963559	91963568	2	8	379.176	-	-	4	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	7	0	7	0	18	11	18	11	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760595733	X	93000438	CA	C	300	PASS	-	-	-	-	-	Del	-	D	93000438	93000447	1	10	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	1	4	2	7	23	24	23	24	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596219	X	95353256	GA	G	480	PASS	-	-	-	-	-	Del	-	D	95353256	95353264	1	24	433.345	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	5	4	7	36	29	36	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596303	X	95784204	CA	C	360	PASS	-	-	-	-	-	Del	-	D	95784204	95784214	1	16	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	3	3	3	14	13	14	13	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596429	X	96275036	TA	T	360	PASS	DIAPH2	CCDS14467.1	r.?	-	-	Del	intronic	D	96275036	96275045	1	12	325.008	-	-	8	1	1	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	5	1	5	1	29	17	29	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596571	X	96738466	C	CA	660	PASS	DIAPH2	CCDS14467.1	r.?	-	-	Ins	intronic	I	96738466	96738469	1	40	589.226	-	-	2	1	1	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	4	7	4	8	34	23	34	23	4	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596619	X	96912695	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	96912695	96912703	1	24	480.288	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	7	5	10	20	41	20	42	5	10	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596641	X	97006291	CT	C	360	PASS	-	-	-	-	-	Del	-	D	97006291	97006299	1	12	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	5	1	6	23	37	23	37	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596684	X	97285077	TG	T	300	PASS	-	-	-	-	-	Del	-	D	97285077	97285084	1	12	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	3	2	27	22	27	22	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596685	X	97299255	GT	G	269	PASS	-	-	-	-	-	Del	-	D	97299255	97299262	1	12	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	5	3	25	24	25	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596699	X	97391607	AT	A	360	PASS	-	-	-	-	-	Del	-	D	97391607	97391615	1	15	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	2	6	2	34	20	34	20	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596772	X	97732660	GA	G	420	PASS	-	-	-	-	-	Del	-	D	97732660	97732670	1	18	379.176	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	5	3	6	18	32	18	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596774	X	97757029	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	97757029	97757039	1	8	374.36	-	-	9	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	0	7	3	8	21	37	21	38	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596830	X	98017935	CA	C	509	PASS	-	-	-	-	-	Del	-	D	98017935	98017945	1	30	486.308	-	-	9	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	5	4	6	4	25	17	25	17	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596901	X	98394875	CA	C	300	PASS	-	-	-	-	-	Del	-	D	98394875	98394884	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	3	4	18	24	18	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596907	X	98416900	GA	G	305	PASS	-	-	-	-	-	Del	-	D	98416900	98416909	1	16	322.6	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	3	5	28	27	28	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596951	X	98671834	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	98671834	98671840	1	25	428.528	-	-	5	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	4	5	4	20	30	20	30	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596967	X	98817551	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	98817551	98817554	1	15	321.396	-	-	2	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	4	3	4	13	20	13	20	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596981	X	98930882	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	98930882	98930887	1	12	267.83	-	-	4	1	1	-	-	./.	0	0	0	0	11	16	11	17	0	0	./.	3	2	3	3	23	24	24	24	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760596995	X	99040208	GA	G	360	PASS	-	-	-	-	-	Del	-	D	99040208	99040217	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	3	3	3	3	26	15	26	15	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597240	X	99838250	C	CA	300	PASS	TNMD	CCDS14469.1	r.?	-	-	Ins	upstream	I	99838250	99838260	1	12	267.228	-	-	9	1	1	TNMD|CCDS14469.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TNMD|CCDS14469.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	17	14	18	14	0	0	./.	2	3	4	3	30	34	30	34	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597277	X	99989876	CT	C	358	PASS	SYTL4	CCDS14472.1	r.?	-	-	Del	upstream	D	99989876	99989884	1	20	379.176	-	-	7	1	1	SYTL4|CCDS14472.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SYTL4|CCDS14472.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	3	5	17	31	17	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597295	X	100033349	GT	G	300	PASS	-	-	-	-	-	Del	-	D	100033349	100033357	1	12	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	3	3	18	17	18	17	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597461	X	100459642	TA	T	300	PASS	-	-	-	-	-	Del	-	D	100459642	100459651	1	12	270.238	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	5	3	24	21	24	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597540	X	100682532	AT	A	360	PASS	-	-	-	-	-	Del	-	D	100682532	100682541	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	4	3	35	32	35	32	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597549	X	100712425	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	100712425	100712434	1	15	320.192	-	-	8	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	2	4	3	6	22	32	22	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597758	X	101851967	AT	A	420	PASS	ARMCX5	CCDS14500.1	r.?	-	-	Del	upstream	D	101851967	101851977	1	20	379.176	-	-	9	1	1	ARMCX5|CCDS14500.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ARMCX5|CCDS14500.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	5	9	5	0	0	./.	4	3	5	5	26	23	26	23	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597771	X	101947785	TA	T	600	PASS	-	-	-	-	-	Del	-	D	101947785	101947792	1	32	541.079	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	7	3	9	9	26	9	26	3	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597782	X	102025535	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	102025535	102025543	1	12	267.83	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	10	0	0	./.	3	2	3	3	14	21	14	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597790	X	102112706	AT	A	477	PASS	-	-	-	-	-	Del	-	D	102112706	102112715	1	16	433.345	-	-	8	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	7	1	7	5	31	20	31	20	7	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760597911	X	102715812	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	102715812	102715820	1	20	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	4	5	7	19	33	19	33	5	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598045	X	103279041	CT	C	300	PASS	H2BFM	ENST00000243297	r.?	-	-	Del	intronic	D	103279041	103279049	1	12	270.84	-	-	7	1	1	H2BFM|ENST00000243297|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	H2BFM|ENST00000243297|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	5	2	21	14	21	14	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598122	X	103620569	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	103620569	103620574	1	16	318.386	-	-	4	1	1	-	-	./.	0	0	0	0	14	16	15	17	0	0	./.	3	3	5	4	26	34	27	35	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598255	X	104207113	GA	G	600	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104207113	104207123	1	35	541.681	-	-	9	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	6	5	6	22	21	22	21	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598282	X	104297886	GA	G	360	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104297886	104297894	1	15	325.008	-	-	7	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	4	2	5	3	25	20	25	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598437	X	104962949	GA	G	300	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104962949	104962958	1	10	270.84	-	-	8	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	1	4	2	4	19	30	19	30	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598454	X	105063526	AG	A	540	PASS	-	-	-	-	-	Del	-	D	105063526	105063532	1	28	485.706	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	6	3	7	4	29	23	29	23	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598515	X	105388238	T	TC	420	PASS	-	-	-	-	-	Ins	-	I	105388238	105388247	1	20	374.962	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	10	0	0	./.	4	3	4	6	22	38	23	38	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598534	X	105582885	CG	C	300	PASS	-	-	-	-	-	Del	-	D	105582885	105582893	1	12	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	3	4	20	21	20	21	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598547	X	105659806	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	105659806	105659817	2	10	270.84	-	-	5	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	4	1	6	1	16	17	16	17	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598548	X	105662677	AT	A	300	PASS	-	-	-	-	-	Del	-	D	105662677	105662685	1	10	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	2	5	18	15	18	15	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598607	X	106133394	GA	G	420	PASS	-	-	-	-	-	Del	-	D	106133394	106133404	1	18	379.176	-	-	9	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	5	2	7	4	27	18	27	18	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598676	X	106450445	GA	G	300	PASS	CXorf41	CCDS14528.1	r.69delA	c.?	p.?	Del	5'UTR variant	D	106450445	106450455	1	12	270.238	-	-	9	1	1	CXorf41|CCDS14528.1|r.69delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	CXorf41|CCDS14528.1|r.69delA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	3	4	20	30	20	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598821	X	107162026	GCTT	G	360	PASS	MID2	CCDS14532.2	r.?	-	-	Del	intronic	D	107162026	107162033	3	16	325.008	-	-	2	1	1	MID2|CCDS14532.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MID2|CCDS14532.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	3	3	4	4	20	25	20	25	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598914	X	107687819	C	CT	660	PASS	COL4A5	CCDS35366.1	r.?	-	-	Ins	intronic	I	107687819	107687825	1	42	589.226	-	-	5	1	1	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	6	5	7	7	36	29	36	29	7	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760598943	X	107868710	AT	A	360	PASS	COL4A5	CCDS35366.1	r.?	-	-	Del	intronic	D	107868710	107868720	1	12	325.008	-	-	9	1	1	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	5	1	5	5	21	5	21	1	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599078	X	108458997	AC	A	420	PASS	-	-	-	-	-	Del	-	D	108458997	108459004	1	18	379.176	-	-	6	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	5	2	6	4	39	32	39	32	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599079	X	108465089	GA	G	420	PASS	-	-	-	-	-	Del	-	D	108465089	108465099	1	18	378.574	-	-	9	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	2	5	4	5	31	22	31	22	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599166	X	108917015	TA	T	540	PASS	ACSL4	CCDS14548.1	r.?	-	-	Del	intronic	D	108917015	108917023	1	30	487.513	-	-	7	1	1	ACSL4|CCDS14548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACSL4|CCDS14548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	5	4	18	29	18	29	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599237	X	109087234	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	109087234	109087243	1	20	374.36	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	10	14	0	0	./.	3	4	5	5	29	26	29	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599238	X	109087994	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	109087994	109088004	1	16	318.988	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	3	3	3	3	22	28	22	28	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599261	X	109158909	CA	C	420	PASS	-	-	-	-	-	Del	-	D	109158909	109158918	1	14	379.176	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	1	9	2	34	22	34	22	9	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599366	X	109849793	A	AC	330	PASS	-	-	-	-	-	Ins	-	I	109849793	109849801	1	18	372.554	-	-	7	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	5	2	8	5	32	23	33	24	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599525	X	110889609	CT	C	300	PASS	-	-	-	-	-	Del	-	D	110889609	110889619	1	6	270.238	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	0	6	1	15	10	15	10	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599685	X	111799669	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	111799669	111799675	1	16	321.396	-	-	5	1	1	-	-	./.	0	0	0	0	11	18	11	19	0	0	./.	3	3	4	5	28	26	29	26	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599715	X	111989143	CCTT	C	389	PASS	-	-	-	-	-	Del	-	D	111989143	111989150	3	18	379.176	-	-	2	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	2	5	4	6	32	35	32	35	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599733	X	112092437	GCAAA	G	300	PASS	-	-	-	-	-	Del	-	D	112092437	112092444	4	12	270.84	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	3	2	4	27	19	27	19	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760599880	X	112577881	GA	G	300	PASS	-	-	-	-	-	Del	-	D	112577881	112577891	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	2	4	16	20	16	20	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600027	X	113222893	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	113222893	113222911	2	15	323.202	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	2	6	2	28	23	28	23	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600086	X	113496187	CT	C	420	PASS	-	-	-	-	-	Del	-	D	113496187	113496197	1	20	377.37	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	4	5	9	29	26	29	26	5	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600104	X	113569959	AT	A	300	PASS	-	-	-	-	-	Del	-	D	113569959	113569968	1	12	262.411	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	3	28	18	28	18	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600259	X	114333640	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	114333640	114333643	1	16	321.396	-	-	2	1	1	-	-	./.	0	0	0	0	13	6	13	7	0	0	./.	3	3	3	5	26	27	28	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600400	X	114811100	CA	C	660	PASS	PLS3	CCDS14568.1	r.?	-	-	Del	intronic	D	114811100	114811109	1	36	595.247	-	-	8	1	1	PLS3|CCDS14568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLS3|CCDS14568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	8	3	10	4	31	20	31	20	10	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600446	X	115018463	GA	G	360	PASS	-	-	-	-	-	Del	-	D	115018463	115018472	1	15	323.202	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	2	4	4	37	21	37	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600556	X	115437120	CTTAG	C	298	PASS	-	-	-	-	-	Del	-	D	115437120	115437131	4	7	325.008	-	-	2	1	1	-	-	./.	0	0	0	0	6	20	6	20	0	0	./.	6	0	7	0	29	6	29	6	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600587	X	115566649	GCA	G	360	PASS	SLC6A14	CCDS14570.1	r.?	-	-	Del	upstream	D	115566649	115566664	2	16	325.008	-	-	7	1	1	SLC6A14|CCDS14570.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SLC6A14|CCDS14570.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	5	3	27	27	27	27	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600776	X	116296264	GA	G	420	PASS	-	-	-	-	-	Del	-	D	116296264	116296273	1	18	379.176	-	-	8	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	5	2	5	2	33	8	33	8	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600829	X	116548468	CA	C	360	PASS	-	-	-	-	-	Del	-	D	116548468	116548477	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	2	7	27	34	27	34	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600947	X	117251688	C	CA	269	PASS	KLHL13	ENST00000371882	r.?	-	-	Ins	upstream	I	117251688	117251697	1	10	266.626	-	-	8	1	1	KLHL13|ENST00000371882|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	KLHL13|ENST00000371882|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	2	6	22	38	22	38	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760600957	X	117274687	TA	T	300	PASS	-	-	-	-	-	Del	-	D	117274687	117274697	1	6	269.636	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	0	8	0	20	29	20	29	8	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601154	X	117838632	GA	G	360	PASS	-	-	-	-	-	Del	-	D	117838632	117838642	1	15	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	4	2	5	5	26	20	26	20	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601173	X	117880536	TA	T	600	PASS	IL13RA1	CCDS14573.1	r.?	-	-	Del	intronic	D	117880536	117880538	1	36	541.681	-	-	1	1	1	IL13RA1|CCDS14573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL13RA1|CCDS14573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	5	5	6	9	27	25	27	25	6	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601223	X	118016061	CT	C	300	PASS	-	-	-	-	-	Del	-	D	118016061	118016071	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	4	5	25	23	25	23	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601259	X	118132214	G	GTA	420	PASS	LONRF3	CCDS14575.1	r.?	-	-	Ins	intronic	I	118132214	118132225	2	14	370.748	-	-	5	1	1	LONRF3|CCDS14575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LONRF3|CCDS14575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	1	6	3	6	18	31	18	32	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601311	X	118351212	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	118351212	118351217	1	36	535.66	-	-	4	1	1	-	-	./.	0	0	0	0	6	14	7	14	0	0	./.	5	5	6	7	29	34	30	35	6	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601587	X	119017221	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	119017221	119017224	2	6	269.034	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	0	5	2	6	11	26	11	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601651	X	119374715	CA	C	480	PASS	-	-	-	-	-	Del	-	D	119374715	119374722	1	16	432.14	-	-	6	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	1	7	1	9	3	27	3	27	1	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601653	X	119385253	TC	T	420	PASS	ZBTB33	CCDS14596.1	r.?	-	-	Del	intronic	D	119385253	119385263	1	14	377.37	-	-	9	1	1	ZBTB33|CCDS14596.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZBTB33|CCDS14596.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	6	2	7	21	27	21	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601715	X	119616606	AT	A	360	PASS	-	-	-	-	-	Del	-	D	119616606	119616616	1	7	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	6	0	7	1	27	11	27	11	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601863	X	120294412	CT	C	480	PASS	-	-	-	-	-	Del	-	D	120294412	120294419	1	24	433.345	-	-	6	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	5	3	6	3	30	29	30	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601889	X	120428498	CT	C	300	PASS	-	-	-	-	-	Del	-	D	120428498	120428508	1	12	270.238	-	-	9	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	3	4	24	26	24	26	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601932	X	120778322	GT	G	420	PASS	-	-	-	-	-	Del	-	D	120778322	120778332	1	18	379.176	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	5	2	7	6	28	24	28	24	7	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760601936	X	120796061	AT	A	480	PASS	-	-	-	-	-	Del	-	D	120796061	120796070	1	24	433.345	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	5	4	7	23	29	23	29	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602094	X	121494529	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	121494529	121494539	1	15	321.396	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	2	5	3	27	21	27	21	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602136	X	121709978	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	121709978	121709987	1	15	319.59	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	2	6	3	23	29	25	29	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602177	X	121839202	CA	C	300	PASS	-	-	-	-	-	Del	-	D	121839202	121839208	1	10	270.84	-	-	5	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	5	1	19	7	19	7	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602281	X	122240718	CA	C	300	PASS	-	-	-	-	-	Del	-	D	122240718	122240727	1	12	270.238	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	5	4	29	37	29	37	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602363	X	122546805	G	GA	420	PASS	GRIA3	ENST00000264357	r.?	-	-	Ins	intronic	I	122546805	122546815	1	20	374.36	-	-	9	1	1	GRIA3|ENST00000264357|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIA3|ENST00000264357|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	3	4	4	7	27	37	27	37	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602490	X	122940733	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	122940733	122940741	1	16	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	11	14	0	0	./.	3	3	4	4	24	42	24	42	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760602790	X	123980169	CA	C	360	PASS	ODZ1	CCDS14609.1	r.?	-	-	Del	intronic	D	123980169	123980177	1	15	325.008	-	-	7	1	1	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	2	4	2	21	22	21	22	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603012	X	124825171	CT	C	360	PASS	-	-	-	-	-	Del	-	D	124825171	124825178	1	15	320.794	-	-	6	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	4	3	5	31	33	31	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603038	X	124949292	GT	G	360	PASS	-	-	-	-	-	Del	-	D	124949292	124949301	1	15	325.008	-	-	8	1	-	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	3	5	25	33	25	33	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603096	X	125225071	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	125225071	125225077	1	20	374.962	-	-	5	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	4	3	4	14	18	14	18	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603140	X	125514973	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	125514973	125514981	1	18	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	13	16	0	0	./.	5	2	5	4	34	22	34	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603141	X	125522401	G	GA	263	PASS	-	-	-	-	-	Ins	-	I	125522401	125522409	1	12	267.83	-	-	7	1	1	-	-	./.	0	0	0	0	7	15	8	15	0	0	./.	2	3	2	4	29	28	29	29	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603177	X	125643950	AT	A	300	PASS	-	-	-	-	-	Del	-	D	125643950	125643960	1	12	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	3	2	18	20	18	20	3	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603193	X	125738028	AT	A	300	PASS	-	-	-	-	-	Del	-	D	125738028	125738037	1	10	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	4	1	27	18	27	18	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603217	X	125827471	TA	T	300	PASS	-	-	-	-	-	Del	-	D	125827471	125827478	1	10	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	5	2	28	25	28	25	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603449	X	126708555	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	126708555	126708563	1	14	374.962	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	1	7	1	33	30	33	30	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603561	X	127098035	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	127098035	127098042	1	15	321.396	-	-	6	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	4	2	6	2	30	24	30	24	6	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603709	X	127650602	CT	C	269	PASS	-	-	-	-	-	Del	-	D	127650602	127650611	1	10	270.238	-	-	8	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	4	1	5	2	27	24	27	24	5	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603753	X	127846566	GA	G	360	PASS	-	-	-	-	-	Del	-	D	127846566	127846575	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	3	3	5	26	24	26	24	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603763	X	127907393	AT	A	420	PASS	-	-	-	-	-	Del	-	D	127907393	127907401	1	20	378.574	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	3	6	3	30	33	30	33	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760603803	X	128084537	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	128084537	128084542	2	12	270.238	-	-	2	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	5	3	20	25	20	25	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604002	X	129112600	GGT	G	360	PASS	BCORL1	CCDS14616.1	r.?	-	-	Del	upstream	D	129112600	129112620	2	16	321.998	-	-	9	1	-	BCORL1|CCDS14616.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BCORL1|CCDS14616.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	5	11	5	0	0	./.	3	3	3	5	23	31	23	31	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604052	X	129281915	TA	T	300	PASS	AIFM1	CCDS48167.1	r.?	-	-	Del	intronic	D	129281915	129281925	1	12	270.84	-	-	9	1	1	AIFM1|CCDS48167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIFM1|CCDS48167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	2	6	23	33	23	33	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604074	X	129381100	ATTTG	A	449	PASS	ZNF280C	CCDS14622.1	r.?	-	-	Del	intronic	D	129381100	129381112	4	21	433.345	-	-	2	1	1	ZNF280C|CCDS14622.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF280C|CCDS14622.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	2	6	3	8	32	36	32	36	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604086	X	129427397	TA	T	480	PASS	-	-	-	-	-	Del	-	D	129427397	129427406	1	24	433.345	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	5	3	5	4	31	22	31	22	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604221	X	129908860	T	TA	360	PASS	ENOX2	CCDS14626.1	r.?	-	-	Ins	intronic	I	129908860	129908868	1	15	318.988	-	-	7	1	1	ENOX2|CCDS14626.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENOX2|CCDS14626.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	5	6	31	22	31	22	5	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604270	X	130249762	CT	C	540	PASS	-	-	-	-	-	Del	-	D	130249762	130249770	1	10	487.513	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	0	9	0	9	11	31	11	31	0	9	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604319	X	130515201	CT	C	315	PASS	IGSF1	ENST00000370904	r.?	-	-	Del	intronic	D	130515201	130515209	1	20	379.176	-	-	7	1	1	IGSF1|ENST00000370904|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IGSF1|ENST00000370904|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	4	3	4	17	30	17	30	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604350	X	130695749	TA	T	300	PASS	-	-	-	-	-	Del	-	D	130695749	130695759	1	12	267.83	-	-	9	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	2	3	2	4	25	24	25	24	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604365	X	130778881	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	130778881	130778888	1	12	320.794	-	-	6	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	1	5	4	6	25	27	25	27	4	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604378	X	130809216	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	130809216	130809225	1	15	321.396	-	-	8	1	-	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	2	4	6	5	30	31	30	32	6	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604428	X	130946116	GA	G	600	PASS	-	-	-	-	-	Del	-	D	130946116	130946125	1	35	539.272	-	-	8	1	1	-	-	./.	0	0	0	0	16	4	16	4	0	0	./.	6	4	8	5	29	26	29	26	8	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604497	X	131259612	CT	C	420	PASS	FRMD7	CCDS35397.1	r.?	-	-	Del	intronic	D	131259612	131259619	1	20	379.176	-	-	6	1	1	FRMD7|CCDS35397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD7|CCDS35397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	4	5	5	23	29	23	29	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604555	X	131571975	C	CA	300	PASS	MBNL3	CCDS14633.1	r.?	-	-	Ins	intronic	I	131571975	131571985	1	12	267.83	-	-	9	1	1	MBNL3|CCDS14633.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBNL3|CCDS14633.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	2	4	13	23	13	25	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604684	X	132167148	CT	C	300	PASS	USP26	CCDS14635.1	r.?	-	-	Del	upstream	D	132167148	132167157	1	12	269.636	-	-	8	1	1	USP26|CCDS14635.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	USP26|CCDS14635.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	2	3	3	5	24	22	24	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604794	X	132622737	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	132622737	132622745	1	10	267.83	-	-	7	1	-	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	1	5	1	29	17	29	17	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604830	X	132687456	CT	C	480	PASS	GPC3	CCDS14638.1	r.?	-	-	Del	intronic	D	132687456	132687464	1	21	433.345	-	-	7	1	1	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	6	3	6	16	29	16	29	3	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604881	X	132958859	CA	C	300	PASS	GPC3	CCDS14638.1	r.?	-	-	Del	intronic	D	132958859	132958867	1	12	270.84	-	-	7	1	1	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	3	5	17	19	17	19	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760604950	X	133243154	GA	G	780	PASS	-	-	-	-	-	Del	-	D	133243154	133243161	1	50	704.185	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	9	4	13	4	26	22	26	22	13	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605114	X	133974868	AT	A	420	PASS	FAM122C	CCDS14644.1	r.?	-	-	Del	intronic	D	133974868	133974876	1	20	379.176	-	-	7	1	1	FAM122C|CCDS14644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM122C|CCDS14644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	3	5	3	9	23	9	23	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605165	X	134088452	CT	C	329	PASS	-	-	-	-	-	Del	-	D	134088452	134088462	1	16	323.202	-	-	9	1	-	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	4	4	32	28	32	28	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605212	X	134327790	ATC	A	420	PASS	-	-	-	-	-	Del	-	D	134327790	134327808	2	20	379.176	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	3	5	5	24	26	24	26	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605284	X	134685895	CT	C	360	PASS	DDX26B	CCDS35401.1	r.?	-	-	Del	intronic	D	134685895	134685903	1	16	325.008	-	-	7	1	1	DDX26B|CCDS35401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DDX26B|CCDS35401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	4	4	25	29	25	29	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605290	X	134720169	TG	T	269	PASS	DDX26B	CCDS35401.1	r.?	-	-	Del	downstream	D	134720169	134720177	1	12	269.636	-	-	7	1	1	DDX26B|CCDS35401.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DDX26B|CCDS35401.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	4	16	4	16	0	0	./.	2	3	3	5	18	20	18	20	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605364	X	135113136	T	TA	300	PASS	SLC9A6	CCDS44003.1	r.?	-	-	Ins	intronic	I	135113136	135113145	1	6	267.83	-	-	8	1	1	SLC9A6|CCDS44003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC9A6|CCDS44003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	6	11	0	0	./.	5	0	6	0	35	21	35	22	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605457	X	135316397	TG	T	269	PASS	MAP7D3	CCDS44004.1	r.?	-	-	Del	intronic	D	135316397	135316406	1	6	270.238	-	-	8	1	1	MAP7D3|CCDS44004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP7D3|CCDS44004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	0	5	2	6	30	21	30	21	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605491	X	135479122	AT	A	300	PASS	GPR112	CCDS35409.1	r.?	-	-	Del	intronic	D	135479122	135479129	1	10	270.84	-	-	6	1	1	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	1	4	2	4	20	18	20	18	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605571	X	135832416	CT	C	420	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Del	intronic	D	135832416	135832421	1	14	379.176	-	-	4	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	1	6	4	7	30	35	30	35	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605573	X	135838325	GA	G	360	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Del	intronic	D	135838325	135838334	1	15	325.008	-	-	8	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	2	4	5	4	22	25	22	25	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605582	X	135862677	T	TG	300	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Ins	intronic	I	135862677	135862683	1	12	267.83	-	-	5	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	2	3	2	4	16	28	17	28	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605671	X	136101243	TG	T	300	PASS	-	-	-	-	-	Del	-	D	136101243	136101249	1	12	270.84	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	4	4	30	20	30	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605689	X	136233447	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	136233447	136233457	1	10	267.83	-	-	9	1	1	-	-	./.	0	0	0	0	15	18	15	19	0	0	./.	4	1	5	1	29	10	30	10	5	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605737	X	136420012	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	136420012	136420020	1	12	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	11	16	0	0	./.	1	5	2	5	21	31	21	31	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605807	X	136654281	AT	A	329	PASS	ZIC3	CCDS14663.1	r.?	-	-	Del	downstream	D	136654281	136654290	1	15	325.008	-	-	8	1	1	ZIC3|CCDS14663.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZIC3|ENST00000370606|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	4	5	4	32	10	32	10	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605856	X	136805256	AT	A	300	PASS	-	-	-	-	-	Del	-	D	136805256	136805265	1	6	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	0	6	1	24	20	24	20	6	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605888	X	136875448	G	GA	697	PASS	-	-	-	-	-	Ins	-	I	136875448	136875455	1	45	642.19	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	8	4	10	8	32	32	33	32	10	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605898	X	136941625	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	136941625	136941634	1	16	321.396	-	-	8	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	3	3	24	22	24	22	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760605975	X	137273014	CT	C	360	PASS	-	-	-	-	-	Del	-	D	137273014	137273020	1	16	323.202	-	-	5	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	3	3	4	31	24	31	24	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606031	X	137585970	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	137585970	137585978	1	24	428.528	-	-	7	1	1	-	-	./.	0	0	0	0	8	15	9	15	0	0	./.	3	5	4	7	33	36	33	36	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606036	X	137619187	TA	T	360	PASS	-	-	-	-	-	Del	-	D	137619187	137619196	1	16	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	3	4	4	27	18	27	18	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606079	X	137959414	GA	G	300	PASS	FGF13	ENST00000370603	r.?	-	-	Del	intronic	D	137959414	137959424	1	12	270.238	-	-	9	1	1	FGF13|ENST00000370603|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF13|ENST00000370603|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	3	3	16	13	16	13	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606134	X	138166905	T	TA	420	PASS	FGF13	ENST00000436198	r.?	-	-	Ins	intronic	I	138166905	138166912	1	18	371.35	-	-	6	1	1	FGF13|ENST00000436198|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF13|ENST00000436198|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	2	6	4	25	29	25	29	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606438	X	139322886	CT	C	480	PASS	-	-	-	-	-	Del	-	D	139322886	139322895	1	24	432.742	-	-	8	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	3	5	5	5	20	21	20	21	5	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606673	X	140423222	GA	G	296	PASS	-	-	-	-	-	Del	-	D	140423222	140423230	1	12	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	1	5	2	6	22	30	22	30	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606738	X	140740870	AT	A	300	PASS	-	-	-	-	-	Del	-	D	140740870	140740879	1	10	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	1	6	4	20	4	20	1	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606741	X	140751804	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	140751804	140751812	1	15	321.396	-	-	7	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	2	5	4	32	27	32	27	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606858	X	141228625	CA	C	360	PASS	-	-	-	-	-	Del	-	D	141228625	141228633	1	16	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	3	3	5	3	28	18	28	18	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760606911	X	141406607	AT	A	329	PASS	-	-	-	-	-	Del	-	D	141406607	141406615	1	7	325.008	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	0	6	0	7	12	31	12	31	0	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607094	X	142177896	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	142177896	142177904	1	10	267.83	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	1	4	22	26	22	27	1	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607102	X	142204312	TC	T	540	PASS	-	-	-	-	-	Del	-	D	142204312	142204319	1	28	483.298	-	-	6	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	6	3	8	4	27	23	27	23	8	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607236	X	142756075	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	142756075	142756082	1	12	267.83	-	-	6	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	3	2	4	2	17	23	17	23	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607339	X	143154541	GA	G	300	PASS	-	-	-	-	-	Del	-	D	143154541	143154550	1	12	269.636	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	4	4	16	17	16	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607354	X	143317915	CA	C	360	PASS	-	-	-	-	-	Del	-	D	143317915	143317924	1	12	323.202	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	1	5	3	34	20	34	20	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607379	X	143385468	TC	T	360	PASS	-	-	-	-	-	Del	-	D	143385468	143385473	1	15	325.008	-	-	4	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	2	4	3	5	23	22	23	22	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607440	X	143660500	GA	G	300	PASS	-	-	-	-	-	Del	-	D	143660500	143660508	1	6	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	0	7	0	21	3	21	3	7	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607565	X	144074268	GT	G	300	PASS	-	-	-	-	-	Del	-	D	144074268	144074278	1	10	270.84	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	4	1	39	27	39	27	4	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607722	X	144628098	CA	C	480	PASS	-	-	-	-	-	Del	-	D	144628098	144628108	1	25	432.742	-	-	9	1	1	-	-	./.	0	0	0	0	3	20	3	20	0	0	./.	4	4	4	5	20	19	20	19	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607727	X	144672967	TA	T	360	PASS	-	-	-	-	-	Del	-	D	144672967	144672976	1	7	323.804	-	-	8	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	6	0	6	0	29	9	29	9	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760607952	X	145667897	GA	G	360	PASS	-	-	-	-	-	Del	-	D	145667897	145667907	1	16	324.406	-	-	9	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	3	3	3	7	22	21	22	21	3	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608003	X	145863084	GA	G	420	PASS	-	-	-	-	-	Del	-	D	145863084	145863093	1	18	373.758	-	-	8	1	1	-	-	./.	0	0	0	0	9	26	9	26	0	0	./.	5	2	9	5	26	18	26	18	9	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608095	X	146157260	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	146157260	146157270	1	15	321.396	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	2	6	10	31	10	32	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608129	X	146307496	CG	C	540	PASS	MIR513A2	ENST00000385249	r.?	-	-	Del	upstream	D	146307496	146307498	1	24	487.513	-	-	1	1	1	MIR513A2|ENST00000385249|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR513A2|ENST00000385249|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	10	11	10	11	0	0	./.	2	7	3	8	29	22	29	22	3	8	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608135	X	146333601	CA	C	360	PASS	-	-	-	-	-	Del	-	D	146333601	146333610	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	2	6	3	24	27	24	27	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608146	X	146371739	GA	G	300	PASS	-	-	-	-	-	Del	-	D	146371739	146371745	1	6	270.84	-	-	5	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	0	5	2	7	22	27	22	27	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608159	X	146452415	AT	A	300	PASS	-	-	-	-	-	Del	-	D	146452415	146452424	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	2	4	14	16	14	16	2	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608162	X	146484187	CT	C	300	PASS	-	-	-	-	-	Del	-	D	146484187	146484194	1	10	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	1	4	2	6	11	26	11	26	2	6	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608280	X	146992383	CT	C	269	PASS	FMR1	CCDS14682.1	r.?	-	-	Del	upstream	D	146992383	146992393	1	12	266.024	-	-	9	1	1	FMR1|CCDS14682.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000224191|ENST00000433064|r.1049delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	7	9	7	9	0	0	./.	2	3	4	3	35	22	35	22	4	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608322	X	147144015	CT	C	300	PASS	-	-	-	-	-	Del	-	D	147144015	147144024	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	3	2	3	3	37	21	37	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608419	X	147552527	TC	T	360	PASS	-	-	-	-	-	Del	-	D	147552527	147552536	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	2	7	4	25	16	25	16	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608421	X	147564763	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	147564763	147564770	1	12	267.83	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	4	2	23	28	23	28	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608451	X	147684743	G	GA	300	PASS	AFF2	CCDS14684.1	r.?	-	-	Ins	intronic	I	147684743	147684753	1	12	266.626	-	-	9	1	1	AFF2|CCDS14684.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AFF2|CCDS14684.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	3	2	3	3	41	26	41	26	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608460	X	147732877	CT	C	480	PASS	AFF2	CCDS14684.1	r.?	-	-	Del	intronic	D	147732877	147732885	1	24	433.345	-	-	7	1	1	AFF2|CCDS14684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF2|CCDS14684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	3	7	4	31	28	31	28	7	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608483	X	147820118	AT	A	360	PASS	AFF2	CCDS14684.1	r.?	-	-	Del	intronic	D	147820118	147820128	1	15	325.008	-	-	9	1	1	AFF2|CCDS14684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF2|CCDS14684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	2	5	3	26	24	26	24	5	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608526	X	148098036	GT	G	420	PASS	-	-	-	-	-	Del	-	D	148098036	148098044	1	14	379.176	-	-	7	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	1	6	2	7	22	38	22	38	2	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608534	X	148144938	GT	G	300	PASS	-	-	-	-	-	Del	-	D	148144938	148144946	1	12	270.84	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	3	3	3	23	9	23	9	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608540	X	148187372	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	148187372	148187382	1	12	265.422	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	4	5	26	29	27	29	4	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608718	X	149318767	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	149318767	149318777	2	18	379.176	-	-	9	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	2	5	4	7	29	24	29	24	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608749	X	149451230	TC	T	300	PASS	-	-	-	-	-	Del	-	D	149451230	149451237	1	10	270.84	-	-	6	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	1	4	2	29	21	29	21	4	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608755	X	149465940	AT	A	329	PASS	-	-	-	-	-	Del	-	D	149465940	149465949	1	15	325.008	-	-	8	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	2	4	3	4	18	27	18	27	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608764	X	149519487	CT	C	300	PASS	-	-	-	-	-	Del	-	D	149519487	149519496	1	12	270.84	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	22	15	22	15	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608773	X	149550147	C	CT	420	PASS	MAMLD1	CCDS14693.2	r.?	-	-	Ins	intronic	I	149550147	149550156	1	20	373.156	-	-	8	1	1	MAMLD1|CCDS14693.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MAMLD1|CCDS14693.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	15	0	0	./.	3	4	3	4	24	22	24	22	3	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608858	X	149842080	GA	G	300	PASS	MTM1	CCDS14694.1	r.?	-	-	Del	downstream	D	149842080	149842089	1	12	270.84	-	-	8	1	1	MTM1|CCDS14694.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	MTM1|CCDS14694.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	3	27	23	27	23	2	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608901	X	150054564	GA	G	420	PASS	CD99L2	CCDS35427.1	r.?	-	-	Del	intronic	D	150054564	150054572	1	14	377.37	-	-	7	1	1	CD99L2|CCDS35427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD99L2|CCDS35427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	6	1	7	1	38	22	38	22	7	1	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608907	X	150078595	AT	A	420	PASS	-	-	-	-	-	Del	-	D	150078595	150078603	1	20	377.972	-	-	7	1	1	-	-	./.	0	0	0	0	14	3	14	3	0	0	./.	4	3	4	4	26	21	26	21	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608925	X	150138783	CA	C	269	PASS	-	-	-	-	-	Del	-	D	150138783	150138793	1	12	270.238	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	4	4	17	20	17	20	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760608933	X	150155930	CT	C	300	PASS	HMGB3	CCDS35428.1	r.?	-	-	Del	intronic	D	150155930	150155939	1	12	269.034	-	-	8	1	1	HMGB3|CCDS35428.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGB3|CCDS35428.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	3	3	38	21	38	21	3	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609122	X	150892666	TAG	T	420	PASS	FATE1	CCDS14700.1	r.?	-	-	Del	downstream	D	150892666	150892686	2	20	378.574	-	-	9	1	1	FATE1|CCDS14700.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FATE1|CCDS14700.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	8	9	8	0	0	./.	4	3	5	4	32	23	32	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609172	X	151141472	TG	T	269	PASS	MIR224	CCDS14703.1	r.?	-	-	Del	intronic	D	151141472	151141482	1	10	270.84	-	-	9	1	1	MIR224|CCDS14703.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR224|CCDS14703.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	2	5	16	23	16	23	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609207	X	151323170	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	151323170	151323173	1	20	374.962	-	-	2	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	4	6	4	28	28	28	28	6	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609254	X	151624474	CA	C	420	PASS	GABRA3	CCDS14706.1	r.?	-	-	Del	upstream	D	151624474	151624484	1	14	379.176	-	-	9	1	1	GABRA3|CCDS14706.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GABRA3|CCDS14706.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	15	16	15	0	0	./.	6	1	7	2	37	23	37	23	7	2	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609309	X	151978282	CT	C	360	PASS	-	-	-	-	-	Del	-	D	151978282	151978292	1	16	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	3	6	3	28	32	28	32	6	3	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609316	X	152004678	C	CT	308	PASS	NSDHL	CCDS14717.1	r.?	-	-	Ins	intronic	I	152004678	152004684	1	20	374.36	-	-	5	1	1	NSDHL|CCDS14717.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NSDHL|CCDS14717.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	5	4	30	39	31	39	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609522	X	152998320	G	GT	300	PASS	ABCD1	CCDS14728.1	r.?	-	-	Ins	intronic	I	152998320	152998330	1	12	264.218	-	-	9	1	1	ABCD1|CCDS14728.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCD1|CCDS14728.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	5	29	27	30	27	2	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609653	X	153358869	G	GT	840	PASS	MECP2	CCDS14741.1	r.?	-	-	Ins	intronic	I	153358869	153358878	1	60	749.322	-	-	8	1	1	MECP2|CCDS14741.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MECP2|CCDS14741.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	5	9	8	11	23	44	23	45	8	11	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609817	X	154189012	GA	G	300	PASS	F8	CCDS35457.1	r.?	-	-	Del	intronic	D	154189012	154189022	1	6	270.84	-	-	9	1	1	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	0	6	0	21	2	21	2	6	0	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609820	X	154217071	CAA	C	480	PASS	F8	CCDS35457.1	r.?	-	-	Del	intronic	D	154217071	154217075	2	25	433.345	-	-	3	1	1	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	4	5	4	27	23	27	23	5	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609830	X	154264204	G	GT	300	PASS	FUNDC2	CCDS14763.1	r.?	-	-	Ins	intronic	I	154264204	154264214	1	12	267.83	-	-	9	1	1	FUNDC2|CCDS14763.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FUNDC2|CCDS14763.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	2	4	4	23	16	23	17	4	4	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609839	X	154304225	TC	T	480	PASS	MTCP1	CCDS44027.1	r.?	-	-	Del	upstream	D	154304225	154304232	1	21	429.732	-	-	6	1	1	MTCP1|CCDS44027.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MTCP1|CCDS44027.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	6	4	7	26	31	26	31	4	7	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609897	X	154640274	AT	A	360	PASS	-	-	-	-	-	Del	-	D	154640274	154640284	1	15	325.008	-	-	9	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	2	4	3	5	21	27	21	27	3	5	1	1	1	1	1	1	1	1
2772617	PD7318a	PD7318b	2760609920	X	154784135	G	GT	300	PASS	TMLHE	CCDS14768.1	r.?	-	-	Ins	intronic	I	154784135	154784143	1	12	266.626	-	-	7	1	1	TMLHE|CCDS14768.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMLHE|CCDS14768.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	2	3	2	6	17	31	17	32	2	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761035625	1	63003275	AG	A	300	PASS	DOCK7	CCDS30734.1	r.?	-	-	Del	intronic	D	63003275	63003277	1	6	263.262	-	-	1	1	1	DOCK7|CCDS30734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK7|CCDS30734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	0	9	0	26	11	26	11	9	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761042439	1	86639534	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	86639534	86639540	1	12	308.569	-	-	5	1	1	-	-	./.	0	0	0	0	22	27	23	27	0	0	./.	1	5	4	9	17	28	17	29	4	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761054787	1	148537493	TG	T	259	PASS	-	-	-	-	-	Del	-	D	148537493	148537495	1	8	376.153	-	-	1	1	1	-	-	./.	0	0	0	0	37	28	37	28	0	0	./.	7	0	7	0	43	29	43	29	7	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761056548	1	153635439	GC	G	840	PASS	ILF2	CCDS1050.1	r.?	-	-	Del	intronic	D	153635439	153635441	1	63	751.703	-	-	1	1	1	ILF2|CCDS1050.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ILF2|CCDS1050.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	8	6	9	10	20	21	20	21	9	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761067122	1	189163242	TA	T	509	PASS	-	-	-	-	-	Del	-	D	189163242	189163250	1	28	483.625	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	6	7	23	21	23	21	6	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761074623	1	214969245	CTG	C	927	PASS	-	-	-	-	-	Del	-	D	214969245	214969251	2	90	913.514	-	-	2	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	8	9	10	9	23	27	23	27	10	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761086647	10	3077310	A	AG	480	PASS	-	-	-	-	-	Ins	-	I	3077310	3077316	1	24	426.454	-	-	5	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	3	7	3	26	13	26	13	7	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761087129	10	4385132	A	AC	720	PASS	-	-	-	-	-	Ins	-	I	4385132	4385139	1	48	638.476	-	-	6	1	1	-	-	./.	0	0	0	0	20	24	20	24	0	0	./.	5	7	9	8	21	26	22	27	9	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761090664	10	13454333	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	13454333	13454341	1	12	266.534	-	-	7	1	-	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	3	2	4	5	29	24	29	24	4	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761095402	10	28001866	T	TA	300	PASS	MKX	CCDS7156.1	r.?	-	-	Ins	intronic	I	28001866	28001876	1	12	265.329	-	-	9	1	1	MKX|CCDS7156.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MKX|CCDS7156.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	3	22	31	24	31	2	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761095499	10	28313497	CT	C	336	PASS	-	-	-	-	-	Del	-	D	28313497	28313507	1	15	323.453	-	-	9	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	2	5	3	17	16	17	16	5	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761106426	10	62738294	TATCAAAACG	T	319	PASS	RHOBTB1	CCDS7261.1	r.?	-	-	Del	intronic	D	62738294	62738307	9	40	592.996	-	-	1	1	1	RHOBTB1|CCDS7261.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RHOBTB1|CCDS7261.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	7	4	9	4	21	12	21	12	9	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761112683	10	83395205	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	83395205	83395215	1	18	364.116	-	-	9	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	2	5	7	5	23	15	23	15	7	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761127692	10	132918417	CGT	C	300	PASS	TCERG1L	CCDS7662.2	r.?	-	-	Del	intronic	D	132918417	132918435	2	12	260.513	-	-	8	1	-	TCERG1L|CCDS7662.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCERG1L|CCDS7662.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	2	27	25	27	25	3	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761132444	11	11644558	AT	A	600	PASS	GALNTL4	CCDS7807.1	r.?	-	-	Del	upstream	D	11644558	11644561	1	20	540.088	-	-	2	1	1	GALNTL4|CCDS7807.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	GALNTL4|CCDS7807.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	3	8	3	0	0	./.	9	1	13	1	28	5	28	5	13	1	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761142284	11	42387636	CCTTTTCT	C	435	PASS	-	-	-	-	-	Del	-	D	42387636	42387646	7	72	809.529	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	7	8	7	8	18	21	19	21	8	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761144970	11	50576119	CAA	C	300	PASS	-	-	-	-	-	Del	-	D	50576119	50576125	2	12	270.044	-	-	5	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	3	2	4	3	41	28	41	28	4	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761148978	11	67733083	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	67733083	67733088	2	6	270.044	-	-	4	1	1	-	-	./.	0	0	0	0	4	22	4	22	0	0	./.	0	5	0	5	0	14	0	14	0	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761153873	11	85386927	GATTGACCGTGTCTAGGGCACTGTTGGATTATGTTTACAAGCACTAC	G	261	PASS	-	-	-	-	-	Del	-	D	85386927	85386976	46	28	484.273	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	6	3	3	1	14	17	17	19	6	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761154927	11	88756860	T	TA	269	PASS	GRM5	CCDS44694.1	r.?	-	-	Ins	intronic	I	88756860	88756870	1	6	267.033	-	-	9	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	0	5	0	6	4	23	4	23	0	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761157389	11	97734695	TAGA	T	989	PASS	-	-	-	-	-	Del	-	D	97734695	97734703	3	84	915.138	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	11	6	12	7	25	22	26	22	13	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761160704	11	107866772	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	107866772	107866782	1	24	480.66	-	-	9	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	7	2	9	4	32	22	32	22	9	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761164875	11	121482103	CAT	C	720	PASS	SORL1	CCDS8436.1	r.?	-	-	Del	intronic	D	121482103	121482109	2	45	646.901	-	-	2	1	1	SORL1|CCDS8436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORL1|CCDS8436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	8	4	11	5	26	19	26	19	11	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761174125	12	15363581	CA	C	480	PASS	RERG	CCDS8673.1	r.?	-	-	Del	intronic	D	15363581	15363584	1	24	431.505	-	-	2	1	1	RERG|CCDS8673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RERG|CCDS8673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	5	4	6	26	18	26	18	4	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761182297	12	43138661	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	43138661	43138669	1	24	426.689	-	-	7	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	5	3	6	3	19	14	19	14	6	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761187785	12	62026561	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	62026561	62026571	1	42	586.321	-	-	9	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	5	6	7	7	20	23	20	23	7	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761195006	12	90171211	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	90171211	90171213	1	55	747.759	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	21	14	0	0	./.	10	4	13	9	29	16	34	16	13	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761196262	12	94680607	CAG	C	660	PASS	PLXNC1	CCDS9049.1	r.?	-	-	Del	intronic	D	94680607	94680612	2	40	594.148	-	-	2	1	1	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	7	4	11	5	25	16	25	16	11	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761196879	12	95948261	T	TA	360	PASS	USP44	CCDS9053.1	r.?	-	-	Ins	upstream	I	95948261	95948271	1	16	320.468	-	-	9	1	1	USP44|CCDS9053.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	USP44|CCDS9053.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	13	14	13	0	0	./.	3	3	5	6	16	23	17	23	5	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761205581	12	122982088	CA	C	420	PASS	ZCCHC8	ENST00000336229	r.?	-	-	Del	intronic	D	122982088	122982096	1	18	376.89	-	-	7	1	1	ZCCHC8|ENST00000336229|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC8|ENST00000336229|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	2	5	2	7	14	24	14	24	2	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761210335	13	20591938	T	TAAA	418	PASS	ZMYM2	CCDS45016.1	r.?	-	-	Ins	intronic	I	20591938	20591939	3	25	418.683	-	-	0	1	1	ZMYM2|CCDS45016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZMYM2|CCDS45016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	22	16	22	0	0	./.	4	4	4	4	18	16	18	16	4	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761216120	13	36625372	C	CT	300	PASS	DCLK1	CCDS9354.1	r.?	-	-	Ins	intronic	I	36625372	36625376	1	12	267.697	-	-	3	1	1	DCLK1|CCDS9354.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCLK1|CCDS9354.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	5	3	15	13	15	13	5	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761222372	13	56745835	AAAC	A	420	PASS	-	-	-	-	-	Del	-	D	56745835	56745840	3	18	378.991	-	-	1	1	1	-	-	./.	0	0	0	0	27	20	27	20	0	0	./.	2	5	2	5	8	18	8	18	2	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761223615	13	61234999	TTTTAG	T	687	PASS	-	-	-	-	-	Del	-	D	61234999	61235007	5	56	702.636	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	6	7	6	9	29	25	29	25	6	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761230888	13	84129955	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	84129955	84129972	2	12	270.708	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	3	2	28	29	28	29	3	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761234941	13	97157771	GCT	G	480	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Del	intronic	D	97157771	97157780	2	25	433.132	-	-	4	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	4	4	6	9	21	31	21	31	6	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761236527	13	102147971	A	AT	989	PASS	ITGBL1	CCDS9499.1	r.?	-	-	Ins	intronic	I	102147971	102147980	1	88	901.141	-	-	8	1	1	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	7	10	9	14	27	34	27	34	10	14	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761238687	13	109056246	GA	G	360	PASS	-	-	-	-	-	Del	-	D	109056246	109056249	1	15	324.849	-	-	2	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	2	6	7	15	28	15	28	6	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761251413	14	53755876	T	TAA	780	PASS	-	-	-	-	-	Ins	-	I	53755876	53755879	2	56	688.794	-	-	2	1	1	-	-	./.	0	0	0	0	22	27	22	27	0	0	./.	6	7	8	9	23	25	23	25	8	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761274780	15	40244509	TG	T	300	PASS	EIF2AK4	CCDS42016.1	r.?	-	-	Del	intronic	D	40244509	40244511	1	6	264.418	-	-	1	1	1	EIF2AK4|CCDS42016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2AK4|CCDS42016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	15	24	15	0	0	./.	5	0	7	0	28	20	28	20	7	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761278092	15	51731299	AGTT	A	509	PASS	-	-	-	-	-	Del	-	D	51731299	51731308	3	28	487.874	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	3	6	6	6	21	16	21	16	6	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761279322	15	55320884	T	TAC	360	PASS	-	-	-	-	-	Ins	-	I	55320884	55320899	2	12	318.024	-	-	7	1	-	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	5	1	8	1	29	19	31	19	8	1	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761281034	15	60451271	GA	G	360	PASS	-	-	-	-	-	Del	-	D	60451271	60451279	1	15	325.249	-	-	7	1	-	-	-	./.	0	0	0	0	18	30	18	30	0	0	./.	2	4	8	7	34	25	34	25	8	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761283938	15	68881593	TG	T	1200	PASS	CORO2B	ENST00000261861	r.?	-	-	Del	intronic	D	68881593	68881595	1	117	1083.56	-	-	1	1	1	CORO2B|ENST00000261861|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORO2B|ENST00000261861|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	12	8	14	9	31	21	31	21	14	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761284517	15	70930604	CA	C	660	PASS	-	-	-	-	-	Del	-	D	70930604	70930608	1	40	595.086	-	-	3	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	4	7	5	9	20	26	20	26	5	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761285377	15	73596188	AC	A	420	PASS	NEO1	CCDS10247.1	r.5680delC	c.?	p.?	Del	3'UTR variant	D	73596188	73596192	1	20	377.049	-	-	3	1	1	NEO1|CCDS10247.1|r.5680delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	NEO1|CCDS10247.1|r.5680delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	16	12	16	0	0	./.	3	4	3	8	18	22	18	22	3	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761289522	15	87412056	TG	T	660	PASS	-	-	-	-	-	Del	-	D	87412056	87412058	1	40	596.29	-	-	1	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	7	4	12	7	28	20	28	20	12	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761291936	15	95051768	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	95051768	95051778	1	30	480.649	-	-	9	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	5	4	9	6	27	22	28	22	9	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761294682	16	876007	GTGGTCTCTT	G	290	PASS	-	-	-	-	-	Del	-	D	876007	876019	9	35	541.337	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	6	4	8	5	18	22	18	22	8	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761295399	16	3259862	TATA	T	358	PASS	OR1F1	CCDS10496.1	r.?	-	-	Del	downstream	D	3259862	3259868	3	20	378.936	-	-	1	1	1	OR1F1|CCDS10496.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR1F1|CCDS10496.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	20	14	20	0	0	./.	3	4	4	5	23	11	23	11	4	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761300838	16	17951498	AC	A	1080	PASS	-	-	-	-	-	Del	-	D	17951498	17951502	1	99	968.987	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	10	8	16	10	32	20	32	20	16	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761301151	16	19026286	GT	G	420	PASS	TMC7	CCDS10573.1	r.?	-	-	Del	intronic	D	19026286	19026294	1	18	374.119	-	-	7	1	1	TMC7|CCDS10573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMC7|CCDS10573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	5	2	6	3	18	21	18	21	6	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761301958	16	21513318	C	CGAGAAG	300	PASS	-	-	-	-	-	Ins	-	I	21513318	21513328	6	36	549.714	-	-	1	1	1	-	-	./.	0	0	0	0	22	24	23	24	0	0	./.	3	8	4	9	49	45	51	45	4	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761303837	16	26830710	TC	T	720	PASS	-	-	-	-	-	Del	-	D	26830710	26830713	1	45	648.4	-	-	2	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	8	4	11	7	24	15	24	15	11	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761305325	16	31627071	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	31627071	31627078	1	24	428.253	-	-	6	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	5	3	5	3	37	28	37	28	5	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761305833	16	32465364	AC	A	379	PASS	-	-	-	-	-	Del	-	D	32465364	32465368	1	14	703.738	-	-	3	1	1	-	-	./.	0	0	0	0	39	29	39	29	0	0	./.	13	0	15	0	42	43	42	43	15	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761310274	16	53331426	CT	C	420	PASS	CHD9	CCDS45485.1	r.?	-	-	Del	intronic	D	53331426	53331428	1	20	378.936	-	-	1	1	1	CHD9|CCDS45485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD9|CCDS45485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	3	6	4	24	16	24	16	6	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761310978	16	55917175	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	55917175	55917182	1	32	534.112	-	-	6	1	-	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	7	3	8	8	27	32	27	32	8	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761316500	16	74221771	G	GT	360	PASS	AC009120.1	ENST00000510251	r.?	-	-	Ins	downstream	I	74221771	74221778	1	12	321.19	-	-	6	1	1	AC009120.1|ENST00000510251|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	AC009120.1|ENST00000510251|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	14	20	14	20	0	0	./.	5	1	7	4	22	19	22	19	7	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761319262	16	82088357	A	AT	1049	PASS	HSD17B2	CCDS10936.1	r.?	-	-	Ins	intronic	I	82088357	82088364	1	91	961.161	-	-	6	1	1	HSD17B2|CCDS10936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HSD17B2|CCDS10936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	12	6	12	12	29	35	30	35	12	12	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761320380	16	85339664	TC	T	600	PASS	AC092275.1	ENST00000505771	r.?	-	-	Del	upstream	D	85339664	85339667	1	36	541.337	-	-	2	1	1	AC092275.1|ENST00000505771|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC092275.1|ENST00000505771|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	8	21	8	21	0	0	./.	5	5	6	6	25	24	25	24	6	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761321490	16	88861233	CA	C	360	PASS	-	-	-	-	-	Del	-	D	88861233	88861235	1	15	322.394	-	-	1	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	4	2	6	3	18	12	18	12	6	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761322912	17	2185853	GAAGT	G	325	PASS	SMG6	CCDS11016.1	r.?	-	-	Del	intronic	D	2185853	2185859	4	21	431.38	-	-	1	1	1	SMG6|CCDS11016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMG6|CCDS11016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	6	2	9	3	19	15	19	15	9	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761335632	17	39191024	CTGG	C	1074	PASS	KRTAP1-3	CCDS42323.1	r.81_83delCCA	c.47_49delCCA	p.T16delT	Del	inframe	D	39191024	39191031	3	126	1131.7	-	-	2	1	1	KRTAP1-3|CCDS42323.1|r.81_83delCCA|c.47_49delCCA|p.T16delT|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	KRTAP1-3|CCDS42323.1|r.81_83delCCA|c.47_49delCCA|p.T16delT|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	10	10	10	10	0	0	./.	8	13	9	15	27	28	27	28	9	15	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761364836	18	49514083	AAACAACAATCCACTAATT	A	261	PASS	-	-	-	-	-	Del	-	D	49514083	49514103	18	30	484.918	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	5	4	4	4	22	21	23	21	5	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761370800	18	68198284	A	AT	420	PASS	AC013558.1	ENST00000511515	r.?	-	-	Ins	intronic	I	68198284	68198293	1	18	375.286	-	-	8	1	1	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	5	2	8	3	22	20	23	20	8	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761371103	18	69207996	CA	C	360	PASS	-	-	-	-	-	Del	-	D	69207996	69207998	1	12	318.061	-	-	1	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	5	1	10	2	22	12	22	12	10	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761374331	19	1239349	G	GT	300	PASS	C19orf26	CCDS12057.1	r.?	-	-	Ins	upstream	I	1239349	1239359	1	10	268.015	-	-	9	1	1	C19orf26|CCDS12057.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	C19orf26|CCDS12057.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	19	15	20	15	0	0	./.	4	1	5	1	30	23	30	23	5	1	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761380144	19	15120238	T	TA	660	PASS	CCDC105	CCDS12322.1	r.?	-	-	Ins	upstream	I	15120238	15120245	1	42	589.633	-	-	6	1	1	CCDC105|CCDS12322.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CCDC105|CCDS12322.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	19	15	19	15	0	0	./.	6	5	6	5	27	11	27	11	6	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761387758	19	37326186	AAAAAT	A	509	PASS	ZNF790	CCDS12496.1	r.?	-	-	Del	intronic	D	37326186	37326212	5	28	484.233	-	-	5	1	-	ZNF790|CCDS12496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF790|CCDS12496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	20	4	20	0	0	./.	3	6	4	7	14	11	14	11	4	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761388986	19	40622070	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	40622070	40622077	1	63	750.442	-	-	6	1	1	-	-	./.	0	0	0	0	21	12	21	13	0	0	./.	8	6	11	10	31	30	31	30	11	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761411652	2	49423379	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	49423379	49423386	1	12	315.934	-	-	6	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	1	5	3	5	22	19	22	19	3	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761417992	2	72068515	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	72068515	72068523	1	54	691.047	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	8	8	12	19	31	20	31	8	12	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761435307	2	133958032	C	CA	360	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Ins	intronic	I	133958032	133958041	1	12	312.924	-	-	8	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	5	1	7	2	25	10	25	10	7	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761440612	2	152476496	C	CA	420	PASS	NEB	CCDS46424.1	r.?	-	-	Ins	intronic	I	152476496	152476503	1	18	372.102	-	-	6	1	1	NEB|CCDS46424.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEB|CCDS46424.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	11	2	11	0	0	./.	2	5	4	5	18	20	18	20	4	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761441688	2	155634031	TC	T	600	PASS	KCNJ3	CCDS2200.1	r.?	-	-	Del	intronic	D	155634031	155634033	1	32	537.595	-	-	1	1	1	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	3	7	7	10	19	27	19	27	7	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761441722	2	155719152	TC	T	660	PASS	KCNJ3	CCDS2200.1	r.?	-	-	Del	downstream	D	155719152	155719154	1	42	591.354	-	-	1	1	1	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNJ3|CCDS2200.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	20	16	20	0	0	./.	6	5	7	5	20	16	20	16	7	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761442665	2	159416925	TTAAGAG	T	290	PASS	PKP4	CCDS33306.1	r.?	-	-	Del	intronic	D	159416925	159416932	6	36	536.993	-	-	1	1	1	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	5	5	5	6	14	22	14	22	5	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761442684	2	159463279	GAAAT	G	540	PASS	PKP4	CCDS33306.1	r.?	-	-	Del	intronic	D	159463279	159463291	4	28	483.835	-	-	2	1	1	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	18	27	18	0	0	./.	3	6	4	9	16	20	16	20	4	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761463738	2	229782101	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	229782101	229782103	1	48	637.889	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	7	8	7	18	22	18	22	8	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761464857	2	233432766	TATCTAAC	T	493	PASS	EIF4E2	CCDS2496.1	r.?	-	-	Del	intronic	D	233432766	233432775	7	88	913.309	-	-	1	1	1	EIF4E2|CCDS2496.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF4E2|CCDS2496.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	7	10	8	10	23	20	23	20	8	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761465015	2	233813745	A	AC	960	PASS	NGEF	CCDS2500.1	r.?	-	-	Ins	intronic	I	233813745	233813746	1	77	849.315	-	-	0	1	1	NGEF|CCDS2500.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NGEF|CCDS2500.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	10	6	12	9	32	25	32	25	12	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761470040	20	6195190	G	GA	466	PASS	-	-	-	-	-	Ins	-	I	6195190	6195199	1	21	429.757	-	-	8	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	2	6	6	8	26	18	27	18	6	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761473024	20	16603314	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	16603314	16603324	1	18	376.037	-	-	9	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	5	2	8	5	19	24	19	24	8	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761482044	20	45886722	C	CT	720	PASS	ZMYND8	CCDS46613.1	r.?	-	-	Ins	intronic	I	45886722	45886724	1	48	644.635	-	-	1	1	1	ZMYND8|CCDS46613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZMYND8|CCDS46613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	25	23	25	0	0	./.	5	7	6	9	24	24	24	24	6	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761482655	20	47743262	ATAAATAGATCAACAG	A	319	PASS	STAU1	CCDS13414.1	r.?	-	-	Del	intronic	D	47743262	47743278	15	36	597.538	-	-	1	1	1	STAU1|CCDS13414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAU1|CCDS13414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	8	3	8	17	18	17	19	3	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761496101	21	28462858	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	28462858	28462868	1	24	427.018	-	-	9	1	1	-	-	./.	0	0	0	0	13	19	14	20	0	0	./.	3	5	6	6	17	26	17	26	6	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761511366	22	40521634	GAC	G	300	PASS	TNRC6B	CCDS46712.1	r.?	-	-	Del	intronic	D	40521634	40521652	2	10	270.871	-	-	8	1	1	TNRC6B|CCDS46712.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TNRC6B|CCDS46712.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	20	27	20	0	0	./.	1	4	1	5	29	15	29	15	1	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761531344	3	56451823	GA	G	629	PASS	ERC2	CCDS46851.1	r.?	-	-	Del	intronic	D	56451823	56451827	1	36	588.331	-	-	3	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	8	5	9	21	23	21	23	5	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761543641	3	99099361	CAT	C	639	PASS	-	-	-	-	-	Del	-	D	99099361	99099366	2	42	584.718	-	-	2	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	6	5	9	5	23	14	23	14	9	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761550810	3	123650929	CA	C	600	PASS	CCDC14	CCDS3025.2	r.?	-	-	Del	intronic	D	123650929	123650933	1	36	538.677	-	-	3	1	1	CCDC14|CCDS3025.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC14|CCDS3025.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	5	5	5	6	20	19	20	19	5	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761553028	3	131429890	TATC	T	298	PASS	CPNE4	CCDS3072.1	r.?	-	-	Del	intronic	D	131429890	131429898	3	16	323.206	-	-	2	1	1	CPNE4|CCDS3072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE4|CCDS3072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	5	4	21	22	21	22	5	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761558469	3	150558925	C	CG	300	PASS	-	-	-	-	-	Ins	-	I	150558925	150558933	1	6	265.726	-	-	7	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	5	0	5	0	33	10	33	10	5	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761558820	3	151515137	AG	A	809	PASS	-	-	-	-	-	Del	-	D	151515137	151515140	1	55	754.148	-	-	2	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	10	6	13	17	20	17	20	6	13	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761562042	3	163282080	CAGG	C	836	PASS	-	-	-	-	-	Del	-	D	163282080	163282086	3	65	861.884	-	-	1	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	4	12	7	13	19	27	19	27	7	13	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761562495	3	164857404	AG	A	791	PASS	-	-	-	-	-	Del	-	D	164857404	164857407	1	84	967.211	-	-	2	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	13	5	15	6	26	27	26	27	15	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761563035	3	166766964	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	166766964	166766974	1	27	520.013	-	-	9	1	1	-	-	./.	0	0	0	0	29	16	29	16	0	0	./.	2	8	4	11	29	23	29	24	4	11	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761566313	3	178552195	A	AAG	480	PASS	KCNMB2	CCDS3223.1	r.?	-	-	Ins	intronic	I	178552195	178552200	2	24	421.309	-	-	2	1	1	KCNMB2|CCDS3223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNMB2|CCDS3223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	18	0	0	./.	5	3	9	4	25	18	25	20	9	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761570535	3	192437593	AG	A	300	PASS	FGF12	CCDS46983.1	r.?	-	-	Del	intronic	D	192437593	192437595	1	6	269.339	-	-	1	1	-	FGF12|CCDS46983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF12|CCDS46983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	0	7	0	23	22	23	22	7	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761573483	4	3087879	GAGAA	G	538	PASS	HTT	CCDS43206.1	r.?	-	-	Del	intronic	D	3087879	3087894	4	35	538.451	-	-	3	1	1	HTT|CCDS43206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTT|CCDS43206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	6	4	9	5	23	19	23	19	9	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761582023	4	31943112	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	31943112	31943127	2	10	268.021	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	1	4	18	27	18	27	1	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761592732	4	66040372	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	66040372	66040381	1	32	532.43	-	-	8	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	7	3	9	5	21	12	21	12	9	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761599773	4	89441704	A	AT	480	PASS	PIGY	CCDS3631.1	r.?	-	-	Ins	downstream	I	89441704	89441711	1	25	425.944	-	-	6	1	1	PIGY|CCDS3631.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	HERC3|ENST00000513325|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	16	17	16	17	0	0	./.	4	4	4	6	17	24	17	24	4	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761601349	4	95960908	A	AT	389	PASS	BMPR1B	ENST00000515059	r.?	-	-	Ins	intronic	I	95960908	95960917	1	20	372.701	-	-	8	1	1	BMPR1B|ENST00000515059|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BMPR1B|ENST00000515059|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	3	4	3	4	14	17	14	17	3	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761603955	4	106426428	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	106426428	106426445	2	6	269.225	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	0	5	0	19	16	19	16	5	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761612392	4	135619990	GC	G	420	PASS	-	-	-	-	-	Del	-	D	135619990	135619992	1	20	376.915	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	3	4	6	6	25	17	25	17	6	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761613723	4	140170682	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	140170682	140170683	1	12	256.582	-	-	0	1	1	-	-	./.	0	0	0	0	17	11	18	12	0	0	./.	2	3	2	3	19	16	20	16	2	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761616385	4	150109030	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	150109030	150109039	1	24	424.74	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	5	3	5	4	20	20	20	20	5	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761630244	4	190573436	AGGTGGGGTCGTGGAGATGGAAACACCAGTGGAATAAGGGTGGAG	A	364	PASS	-	-	-	-	-	Del	-	D	190573436	190573490	44	27	536.042	-	-	1	1	1	-	-	./.	0	0	0	0	45	36	45	36	0	0	./.	8	2	0	0	170	43	175	44	8	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761645481	5	50506387	TC	T	780	PASS	-	-	-	-	-	Del	-	D	50506387	50506392	1	54	700.987	-	-	4	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	8	7	11	19	25	19	25	7	11	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761656096	5	87969533	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	87969533	87969543	1	35	532.598	-	-	9	1	1	-	-	./.	0	0	0	0	18	23	18	24	0	0	./.	6	4	9	7	18	32	18	32	9	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761661725	5	109641465	GT	G	697	PASS	-	-	-	-	-	Del	-	D	109641465	109641472	1	49	645.259	-	-	6	1	1	-	-	./.	0	0	0	0	25	20	25	20	0	0	./.	6	6	9	7	28	20	28	20	9	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761661855	5	110088917	CAG	C	420	PASS	SLC25A46	CCDS4100.1	r.?	-	-	Del	intronic	D	110088917	110088921	2	18	376.852	-	-	1	1	1	SLC25A46|CCDS4100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A46|CCDS4100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	2	5	5	8	14	29	14	29	5	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761669799	5	139069917	AC	A	360	PASS	-	-	-	-	-	Del	-	D	139069917	139069922	1	15	323.532	-	-	4	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	5	7	27	24	27	24	5	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761672369	5	148812375	CAAT	C	329	PASS	MIR143	ENST00000385300	r.?	-	-	Del	downstream	D	148812375	148812384	3	16	323.532	-	-	2	1	1	MIR143|ENST00000385300|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	MIR143|ENST00000385300|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	4	3	24	27	24	27	4	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761677479	5	166912527	AT	A	960	PASS	-	-	-	-	-	Del	-	D	166912527	166912529	1	80	862.753	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	7	9	7	12	24	26	24	26	7	12	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761679980	5	174852366	TC	T	540	PASS	-	-	-	-	-	Del	-	D	174852366	174852368	1	24	482.89	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	7	5	13	15	27	15	27	5	13	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761681459	5	178977533	G	GCGCC	509	PASS	RUFY1	CCDS4445.2	r.?	-	-	Ins	upstream	I	178977533	178977549	4	30	461.818	-	-	3	1	1	RUFY1|CCDS4445.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	RUFY1|CCDS4445.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	11	20	13	0	0	./.	5	4	5	4	17	12	19	12	5	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761682489	6	1202848	T	TAG	660	PASS	-	-	-	-	-	Ins	-	I	1202848	1202853	2	40	577.924	-	-	2	1	1	-	-	./.	0	0	0	0	14	12	14	13	0	0	./.	4	7	7	9	28	32	28	33	7	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761683957	6	5494372	TG	T	300	PASS	FARS2	CCDS4494.1	r.?	-	-	Del	intronic	D	5494372	5494374	1	6	256.289	-	-	1	1	-	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	22	14	22	0	0	./.	5	0	7	0	20	40	20	40	7	0	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761709677	6	84617328	A	AT	360	PASS	CYB5R4	CCDS5000.2	r.?	-	-	Ins	intronic	I	84617328	84617335	1	15	319.829	-	-	6	1	1	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	2	4	2	8	21	21	22	21	2	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761710822	6	88940616	AT	A	660	PASS	-	-	-	-	-	Del	-	D	88940616	88940618	1	42	592.975	-	-	1	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	5	6	11	10	27	26	27	26	11	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761711736	6	91867961	CTTAT	C	418	PASS	-	-	-	-	-	Del	-	D	91867961	91867968	4	24	431.255	-	-	1	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	5	6	16	16	16	16	5	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761724473	6	137458291	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	137458291	137458293	1	24	479.743	-	-	1	1	1	-	-	./.	0	0	0	0	17	20	18	20	0	0	./.	7	2	10	4	22	18	22	18	10	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761725948	6	143203068	CCT	C	600	PASS	HIVEP2	CCDS43510.1	r.?	-	-	Del	intronic	D	143203068	143203073	2	20	539.069	-	-	2	1	1	HIVEP2|CCDS43510.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HIVEP2|CCDS43510.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	1	9	4	12	19	37	19	37	4	12	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761728966	6	153480043	TCCC	T	838	PASS	-	-	-	-	-	Del	-	D	153480043	153480048	3	66	804.388	-	-	4	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	5	10	7	11	24	21	24	21	7	11	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761732503	6	164857171	ATATGAGCATGCTTTTAACATTTATCTTGTGCAT	A	377	PASS	-	-	-	-	-	Del	-	D	164857171	164857207	33	54	700.789	-	-	1	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	8	5	6	3	16	14	18	16	8	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761735860	7	4735229	TCGACACC	T	305	PASS	FOXK1	CCDS34591.1	r.?	-	-	Del	intronic	D	4735229	4735237	7	42	589.51	-	-	1	1	1	FOXK1|CCDS34591.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXK1|CCDS34591.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	6	5	12	13	30	13	30	5	12	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761743617	7	29033374	G	GA	480	PASS	CPVL	CCDS5419.1	r.?	-	-	Ins	downstream	I	29033374	29033382	1	21	424.137	-	-	7	1	1	CPVL|CCDS5419.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CPVL|CCDS5419.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	20	14	20	14	0	0	./.	2	6	12	7	31	38	31	39	12	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761745027	7	33617646	TAGAACTTAA	T	378	PASS	BBS9	CCDS43566.1	r.?	-	-	Del	intronic	D	33617646	33617658	9	60	808.803	-	-	1	1	1	BBS9|CCDS43566.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BBS9|CCDS43566.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	4	11	6	8	23	21	23	24	6	11	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761745182	7	34296727	TG	T	540	PASS	-	-	-	-	-	Del	-	D	34296727	34296730	1	30	485.282	-	-	2	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	5	4	6	5	18	23	18	23	6	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761748903	7	47226837	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	47226837	47226840	1	42	586.5	-	-	2	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	6	6	7	17	22	17	22	6	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761749657	7	49946527	T	TA	420	PASS	VWC2	CCDS5508.1	r.?	-	-	Ins	intronic	I	49946527	49946537	1	20	373.227	-	-	9	1	1	VWC2|CCDS5508.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VWC2|CCDS5508.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	3	4	7	4	22	26	22	27	7	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761780832	7	150089957	G	GA	660	PASS	ZNF775	CCDS43678.1	r.?	-	-	Ins	intronic	I	150089957	150089963	1	42	586.5	-	-	5	1	1	ZNF775|CCDS43678.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF775|CCDS43678.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	6	5	11	5	28	20	28	21	11	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761805542	8	75750483	TAAG	T	300	PASS	PI15	CCDS6218.1	r.?	-	-	Del	intronic	D	75750483	75750489	3	10	270.03	-	-	1	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	4	1	7	2	22	6	22	6	7	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761808521	8	86849673	T	TA	1080	PASS	-	-	-	-	-	Ins	-	I	86849673	86849676	1	99	955.851	-	-	2	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	10	8	11	11	18	24	18	24	11	11	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761813146	8	103769725	AAGC	A	538	PASS	-	-	-	-	-	Del	-	D	103769725	103769731	3	32	538.855	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	3	7	4	7	21	25	21	25	4	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761816387	8	116617498	TTAATAATA	TTG	348	PASS	TRPS1	CCDS6318.2	r.?	-	-	Complex	intronic	DI	116617499	116617506	8	45	0	-	-	0	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	14	28	14	28	0	0	./.	8	4	0	0	21	21	21	21	8	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761818340	8	123515210	AT	A	660	PASS	-	-	-	-	-	Del	-	D	123515210	123515213	1	40	592.259	-	-	2	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	4	7	4	7	18	27	18	27	4	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761820025	8	129160207	TC	T	600	PASS	MIR1208	ENST00000408334	r.?	-	-	Del	upstream	D	129160207	129160209	1	36	538.855	-	-	1	1	1	MIR1208|ENST00000408334|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	MIR1208|ENST00000408334|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	23	12	23	12	0	0	./.	5	5	7	7	21	20	21	20	7	7	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761822113	8	137080221	CGTT	C	267	PASS	-	-	-	-	-	Del	-	D	137080221	137080230	3	16	324.036	-	-	2	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	3	5	4	13	25	13	25	5	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761825486	9	2281471	C	CT	448	PASS	-	-	-	-	-	Ins	-	I	2281471	2281478	1	30	481.174	-	-	6	1	1	-	-	./.	0	0	0	0	17	7	18	7	0	0	./.	5	4	7	5	22	23	22	23	7	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761826800	9	7055187	CA	C	629	PASS	KDM4C	CCDS6471.1	r.?	-	-	Del	intronic	D	7055187	7055191	1	42	594.725	-	-	3	1	1	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	16	23	16	0	0	./.	5	6	7	8	20	28	20	28	7	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761831158	9	21441913	GGAAGA	G	509	PASS	IFNA1	CCDS6508.1	r.?	-	-	Del	downstream	D	21441913	21441926	5	28	485.991	-	-	2	1	1	IFNA1|CCDS6508.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IFNA1|CCDS6508.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	6	13	6	0	0	./.	6	3	7	6	19	22	19	22	7	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761831843	9	24452311	GT	G	480	PASS	-	-	-	-	-	Del	-	D	24452311	24452313	1	24	432.527	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	5	7	12	18	23	18	23	7	12	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761851544	9	112703376	C	CT	540	PASS	PALM2	CCDS48002.1	r.?	-	-	Ins	intronic	I	112703376	112703383	1	28	479.97	-	-	6	1	1	PALM2|CCDS48002.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PALM2|CCDS48002.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	3	6	6	8	18	32	18	32	6	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761851658	9	113085753	CT	C	720	PASS	TXNDC8	CCDS35104.1	r.?	-	-	Del	intronic	D	113085753	113085757	1	49	647.586	-	-	3	1	1	TXNDC8|CCDS35104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNDC8|ENST00000374507|r.774delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	14	13	14	0	0	./.	6	6	7	10	32	22	32	22	7	10	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761852715	9	115632563	GTTTATTTTTAATGAA	G	435	PASS	SNX30	CCDS43865.1	r.2919_2933delUUUAUUUUUAAUGAA	c.?	p.?	Del	3'UTR variant	D	115632563	115632579	15	72	810.988	-	-	1	1	1	SNX30|CCDS43865.1|r.2919_2933delUUUAUUUUUAAUGAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SNX30|CCDS43865.1|r.2919_2933delUUUAUUUUUAAUGAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	22	25	22	25	0	0	./.	7	8	7	8	23	29	23	29	7	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761854963	9	123119044	TC	T	840	PASS	-	-	-	-	-	Del	-	D	123119044	123119048	1	60	756.922	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	9	5	11	5	23	13	23	13	11	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761855021	9	123434181	AATATATA	AATT	348	PASS	MEGF9	CCDS48010.1	r.?	-	-	Complex	intronic	DI	123434182	123434188	7	49	0	-	-	0	1	1	MEGF9|CCDS48010.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	MEGF9|CCDS48010.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	6	6	0	0	18	24	18	24	6	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761855146	9	123847702	CAG	C	300	PASS	CEP110	CCDS35118.1	r.?	-	-	Del	intronic	D	123847702	123847719	2	12	270.329	-	-	8	1	1	CEP110|CCDS35118.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CEP110|CCDS35118.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	2	3	2	3	20	29	20	29	2	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761861210	X	4211146	CATCT	C	600	PASS	-	-	-	-	-	Del	-	D	4211146	4211157	4	36	540.993	-	-	2	1	-	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	5	11	6	22	23	22	23	11	6	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761865404	X	22859754	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	22859754	22859762	1	40	588.469	-	-	7	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	4	7	7	8	28	17	28	18	7	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761865680	X	23833946	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	23833946	23833964	2	12	270.496	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	3	2	4	24	33	24	33	2	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761866898	X	29378686	C	CT	300	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29378686	29378695	1	12	267.486	-	-	8	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	15	27	15	0	0	./.	3	2	3	2	21	26	21	26	3	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761867480	X	31429764	G	GT	360	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	31429764	31429771	1	12	320.983	-	-	6	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	5	1	8	5	18	17	18	17	8	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761867885	X	33297563	A	AG	300	PASS	DMD	ENST00000288447	r.?	-	-	Ins	intronic	I	33297563	33297567	1	12	265.078	-	-	3	1	1	DMD|ENST00000288447|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|ENST00000288447|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	3	2	3	3	26	32	26	32	3	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761868054	X	34216301	A	ACTG	449	PASS	-	-	-	-	-	Ins	-	I	34216301	34216307	3	25	418.345	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	21	0	0	./.	4	4	6	5	25	22	25	22	6	5	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761868139	X	34560783	TG	T	300	PASS	-	-	-	-	-	Del	-	D	34560783	34560785	1	10	270.496	-	-	1	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	4	1	4	3	20	15	20	15	4	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761869223	X	40506423	A	AGGAG	598	PASS	MED14	CCDS14254.1	r.?	-	-	Ins	downstream	I	40506423	40506435	4	36	566.795	-	-	2	1	1	MED14|CCDS14254.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CXorf38|ENST00000378426|r.383_384inscucc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	21	8	21	8	0	0	./.	3	8	5	9	20	28	20	28	5	9	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761869875	X	43457134	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	43457134	43457151	2	12	269.894	-	-	8	1	-	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	2	3	2	18	23	18	23	3	2	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761873630	X	66687093	TA	T	629	PASS	-	-	-	-	-	Del	-	D	66687093	66687102	1	42	595.092	-	-	8	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	5	6	6	11	18	24	18	24	6	11	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761874659	X	71310519	AC	A	600	PASS	-	-	-	-	-	Del	-	D	71310519	71310526	1	32	539.789	-	-	6	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	7	3	9	3	17	12	17	12	9	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761876181	X	79428228	A	AC	600	PASS	-	-	-	-	-	Ins	-	I	79428228	79428236	1	32	531.962	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	18	0	0	./.	7	3	8	8	19	26	19	26	8	8	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761877572	X	86665876	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	86665876	86665883	1	88	893.799	-	-	6	1	1	-	-	./.	0	0	0	0	16	27	16	27	0	0	./.	7	10	13	13	27	31	27	31	13	13	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761878549	X	90993191	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	90993191	90993199	1	16	427.978	-	-	7	1	1	-	-	./.	0	0	0	0	22	24	23	25	0	0	./.	7	1	12	3	28	35	28	35	12	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761882698	X	112346543	AC	A	426	PASS	-	-	-	-	-	Del	-	D	112346543	112346546	1	24	478.465	-	-	2	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	7	2	8	3	17	10	17	10	8	3	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761883287	X	114727078	AACCATTTGC	A	406	PASS	-	-	-	-	-	Del	-	D	114727078	114727089	9	55	755.584	-	-	1	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	10	4	10	4	27	13	28	13	11	4	1	1	1	1	1	1	1	1
2772674	PD7319a	PD7319b	2761886263	X	126476630	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	126476630	126476649	2	10	270.496	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	1	4	1	4	25	23	25	23	1	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761984246	1	11055671	TCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCCAGCTAATTTTTGTATTTTCAGTAGAGTTGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTGCTGGCCTCAGGTGATCCA	T	290	PASS	-	-	-	-	-	Del	-	D	11055671	11055811	135	32	533.752	-	-	1	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	7	0	0	24	23	26	27	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761985969	1	15980672	CCT	C	900	PASS	DDI2	CCDS30607.1	r.?	-	-	Del	intronic	D	15980672	15980675	2	72	805.445	-	-	1	1	1	DDI2|CCDS30607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DDI2|CCDS30607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	8	7	9	10	26	30	26	30	9	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761986434	1	16877236	CT	C	350	PASS	AL355149.1	ENST00000515775	r.?	-	-	Del	intronic	D	16877236	16877239	1	35	537.365	-	-	2	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	4	6	8	8	44	50	44	50	8	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761991389	1	30885262	CAGCCGTGGTGCTGGTGTTCGCT	C	261	PASS	-	-	-	-	-	Del	-	D	30885262	30885285	22	24	483.628	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	2	5	2	29	28	31	28	7	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761992727	1	34988208	TCTTC	T	358	PASS	-	-	-	-	-	Del	-	D	34988208	34988219	4	18	373.747	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	2	5	3	30	24	30	24	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761993159	1	36734181	GC	G	660	PASS	THRAP3	CCDS405.1	r.?	-	-	Del	intronic	D	36734181	36734183	1	40	588.091	-	-	1	1	1	THRAP3|CCDS405.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THRAP3|CCDS405.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	7	5	8	15	27	15	27	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761993450	1	37939125	GCA	G	360	PASS	ZC3H12A	CCDS417.1	r.?	-	-	Del	upstream	D	37939125	37939144	2	12	322.419	-	-	9	1	-	ZC3H12A|CCDS417.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZC3H12A|CCDS417.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	10	9	10	0	0	./.	5	1	7	1	29	18	29	18	7	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761993976	1	39582708	GCAGCCTCC	G	580	PASS	MACF1	CCDS435.1	r.?	-	-	Del	intronic	D	39582708	39582717	8	121	1072.32	-	-	1	1	1	MACF1|CCDS435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACF1|CCDS435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	10	10	11	10	25	22	25	22	11	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761995715	1	45312429	A	AT	389	PASS	PTCH2	CCDS516.1	r.?	-	-	Ins	upstream	I	45312429	45312437	1	20	370.737	-	-	7	1	1	PTCH2|CCDS516.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PTCH2|CCDS516.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	17	9	18	0	0	./.	4	3	4	3	17	25	18	25	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761998385	1	55301756	CCTT	C	478	PASS	C1orf177	CCDS599.1	r.?	-	-	Del	intronic	D	55301756	55301762	3	30	483.628	-	-	1	1	1	C1orf177|CCDS599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf177|CCDS599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	5	5	6	22	23	22	23	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761999290	1	58780018	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	58780018	58780024	1	15	318.806	-	-	5	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	2	4	6	7	19	26	19	26	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2761999878	1	61142628	C	CA	1200	PASS	-	-	-	-	-	Ins	-	I	61142628	61142637	1	105	1053.05	-	-	8	1	1	-	-	./.	0	0	0	0	15	18	15	19	0	0	./.	6	14	8	21	26	42	26	43	8	21	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762002527	1	70101518	T	TA	540	PASS	LRRC7	ENST00000310961	r.?	-	-	Ins	intronic	I	70101518	70101526	1	30	478.21	-	-	7	1	1	LRRC7|ENST00000310961|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC7|ENST00000310961|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	5	4	6	16	17	16	17	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762003565	1	74485007	TAGG	T	447	PASS	-	-	-	-	-	Del	-	D	74485007	74485017	3	28	481.822	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	6	3	12	16	30	16	30	3	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762010529	1	99344117	AT	A	300	PASS	-	-	-	-	-	Del	-	D	99344117	99344125	1	12	268.682	-	-	7	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	3	2	4	2	26	22	26	22	4	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762011940	1	104658897	TG	T	540	PASS	-	-	-	-	-	Del	-	D	104658897	104658900	1	30	483.026	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	5	5	8	17	26	17	26	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762013457	1	109730557	AGCTATTCCTTGTCACCCAG	A	493	PASS	KIAA1324	CCDS794.1	r.?	-	-	Del	intronic	D	109730557	109730579	19	88	913.52	-	-	1	1	1	KIAA1324|CCDS794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1324|CCDS794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	10	7	10	7	24	23	24	23	10	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762014280	1	112899769	GTA	G	660	PASS	-	-	-	-	-	Del	-	D	112899769	112899772	2	42	589.897	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	5	6	5	7	48	33	48	33	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762016038	1	118697326	GA	G	389	PASS	SPAG17	CCDS899.1	r.?	-	-	Del	intronic	D	118697326	118697329	1	20	367.726	-	-	2	1	1	SPAG17|CCDS899.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG17|CCDS899.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	5	4	25	24	25	25	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762017235	1	142563384	TC	T	268	PASS	-	-	-	-	-	Del	-	D	142563384	142563388	1	34	913.52	-	-	3	1	1	-	-	./.	0	0	0	0	70	74	70	74	0	0	./.	1	16	2	21	84	215	85	215	3	21	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762018250	1	143275379	A	AT	367	PASS	-	-	-	-	-	Ins	-	I	143275379	143275380	1	16	792.802	-	-	0	1	1	-	-	./.	0	0	0	0	53	33	54	33	0	0	./.	0	15	0	18	138	120	141	120	0	19	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762020516	1	149025171	GAACCT	G	259	PASS	-	-	-	-	-	Del	-	D	149025171	149025180	5	15	752.31	-	-	1	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	0	14	0	11	34	80	34	85	0	16	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762021359	1	151254916	TG	T	420	PASS	ZNF687	CCDS992.1	r.?	-	-	Del	intronic	D	151254916	151254925	1	18	368.93	-	-	8	1	1	ZNF687|CCDS992.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF687|CCDS992.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	5	3	8	28	47	28	47	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762021884	1	153425747	TTC	T	326	PASS	S100A7	CCDS1039.1	r.?	-	-	Del	downstream	D	153425747	153425751	2	12	312.184	-	-	1	1	1	S100A7|CCDS1039.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	S100A7|CCDS1039.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	9	12	9	0	0	./.	1	5	2	6	25	28	25	28	2	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762022580	1	155024994	ATTC	A	716	PASS	ADAM15	CCDS1087.1	r.?	-	-	Del	intronic	D	155024994	155025003	3	48	747.494	-	-	2	1	1	ADAM15|CCDS1087.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM15|ENST00000447332|r.181-12_181-10deluuc|c.80-12_80-10delttc|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	8	12	8	12	0	0	./.	3	11	5	13	29	27	29	27	5	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762023163	1	156595557	GGT	G	300	PASS	HAPLN2	CCDS1148.1	r.?	-	-	Del	downstream	D	156595557	156595577	2	10	266.876	-	-	9	1	1	HAPLN2|CCDS1148.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	HAPLN2|CCDS1148.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	12	6	12	6	0	0	./.	1	4	2	3	38	43	38	43	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762023968	1	159333822	GT	G	420	PASS	OR10J1	ENST00000328408	r.?	-	-	Del	intronic	D	159333822	159333830	1	20	376.155	-	-	7	1	1	OR10J1|ENST00000328408|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OR10J1|ENST00000328408|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	3	5	25	27	25	27	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762024356	1	160557287	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	160557287	160557297	1	15	317.602	-	-	9	1	-	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	4	2	13	10	43	33	45	34	13	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762024729	1	161501034	TGTATCCGTTTTACGCCTCAACGAA	T	290	PASS	HSPA7	CCDS1231.1	r.?	-	-	Del	downstream	D	161501034	161501074	24	27	536.16	-	-	1	1	1	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	12	14	12	0	0	./.	2	8	0	7	14	31	16	32	2	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762025857	1	165098491	TGG	T	629	PASS	-	-	-	-	-	Del	-	D	165098491	165098495	2	42	588.091	-	-	3	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	6	5	8	5	26	23	26	23	8	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762027086	1	168963805	AATAGAGAC	A	319	PASS	-	-	-	-	-	Del	-	D	168963805	168963815	8	42	590.499	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	5	7	5	41	27	41	27	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762027622	1	170632183	TTC	T	300	PASS	PRRX1	CCDS1291.1	r.?	-	-	Del	upstream	D	170632183	170632202	2	10	264.468	-	-	9	1	1	PRRX1|CCDS1291.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PRRX1|CCDS1291.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	4	13	4	13	0	0	./.	1	4	1	4	29	23	29	23	1	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762028531	1	173976189	TA	T	439	PASS	-	-	-	-	-	Del	-	D	173976189	173976191	1	24	429.892	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	3	5	5	20	31	20	31	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762029277	1	176392150	ATTTC	A	358	PASS	-	-	-	-	-	Del	-	D	176392150	176392155	4	20	375.553	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	4	3	5	5	26	35	26	35	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762029700	1	178461793	AG	A	1080	PASS	-	-	-	-	-	Del	-	D	178461793	178461798	1	100	966.052	-	-	4	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	9	9	9	13	31	44	31	44	9	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762031719	1	183755552	C	CA	389	PASS	RGL1	CCDS1359.1	r.?	-	-	Ins	intronic	I	183755552	183755560	1	18	370.737	-	-	7	1	1	RGL1|CCDS1359.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGL1|CCDS1359.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	2	5	4	8	32	30	32	32	4	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762032467	1	186963993	A	AACAT	807	PASS	-	-	-	-	-	Ins	-	I	186963993	186964000	4	70	765.709	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	15	13	0	0	./.	6	9	11	9	41	27	41	28	11	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762033211	1	188990181	GT	G	720	PASS	-	-	-	-	-	Del	-	D	188990181	188990183	1	45	644.838	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	8	4	10	6	24	32	24	32	10	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762033937	1	191093424	AAT	A	600	PASS	-	-	-	-	-	Del	-	D	191093424	191093430	2	35	537.365	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	6	4	6	4	29	25	29	25	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762034549	1	193214398	TC	T	300	PASS	CDC73	CCDS1382.1	r.?	-	-	Del	intronic	D	193214398	193214404	1	12	262.06	-	-	5	1	1	CDC73|CCDS1382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC73|CCDS1382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	4	2	27	27	27	27	4	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762034558	1	193243305	TGA	T	1020	PASS	-	-	-	-	-	Del	-	D	193243305	193243308	2	90	913.52	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	9	8	13	11	47	30	47	30	13	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762035960	1	198034797	AT	A	480	PASS	-	-	-	-	-	Del	-	D	198034797	198034804	1	24	429.892	-	-	6	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	3	6	4	24	35	24	35	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762039413	1	208679954	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	208679954	208679957	1	12	265.672	-	-	2	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	6	2	21	21	21	22	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762039714	1	209804534	TA	T	960	PASS	LAMB3	CCDS1487.1	r.?	-	-	Del	intronic	D	209804534	209804540	1	81	859.783	-	-	5	1	1	LAMB3|CCDS1487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMB3|CCDS1487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	8	8	8	9	31	44	31	44	8	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762040186	1	211185916	C	CTT	389	PASS	KCNH1	CCDS31015.1	r.?	-	-	Ins	intronic	I	211185916	211185918	2	18	367.726	-	-	1	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	5	3	7	32	37	32	37	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762040833	1	212826942	TTCTCATTTTCAGGAGAAAC	T	435	PASS	-	-	-	-	-	Del	-	D	212826942	212826962	19	70	801.832	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	9	6	8	6	21	21	22	21	9	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762041534	1	214798234	AC	A	397	PASS	CENPF	CCDS31023.1	r.?	-	-	Del	intronic	D	214798234	214798237	1	20	376.155	-	-	2	1	1	CENPF|CCDS31023.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPF|CCDS31023.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	3	6	3	33	24	33	24	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762047117	1	232770249	T	TC	420	PASS	-	-	-	-	-	Ins	-	I	232770249	232770250	1	18	370.135	-	-	0	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	5	6	12	15	32	15	32	6	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762048312	1	236617220	C	CTT	507	PASS	EDARADD	CCDS31065.1	r.?	-	-	Ins	intronic	I	236617220	236617222	2	35	525.323	-	-	1	1	1	EDARADD|CCDS31065.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDARADD|CCDS31065.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	6	4	9	11	32	11	33	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762050799	1	242879062	GA	G	840	PASS	-	-	-	-	-	Del	-	D	242879062	242879067	1	48	751.106	-	-	4	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	11	3	16	8	34	35	34	35	16	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762051268	1	244357277	T	TA	809	PASS	-	-	-	-	-	Ins	-	I	244357277	244357283	1	63	743.882	-	-	5	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	8	6	9	8	27	27	28	27	9	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762051280	1	244397726	GGCT	G	300	PASS	-	-	-	-	-	Del	-	D	244397726	244397747	3	12	268.682	-	-	6	1	-	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	2	3	36	23	36	23	2	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762056242	10	7418222	TG	T	1020	PASS	SFMBT2	CCDS31138.1	r.?	-	-	Del	intronic	D	7418222	7418224	1	70	915.375	-	-	1	1	1	SFMBT2|CCDS31138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFMBT2|CCDS31138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	13	6	13	23	38	23	38	6	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762056746	10	8551814	GT	G	360	PASS	-	-	-	-	-	Del	-	D	8551814	8551819	1	16	323.286	-	-	4	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	3	4	6	36	20	36	20	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762058761	10	13445393	GTTCAAGTGAT	G	319	PASS	-	-	-	-	-	Del	-	D	13445393	13445406	10	40	592.089	-	-	1	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	7	4	7	5	42	25	42	25	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762058977	10	13912087	TG	T	420	PASS	FRMD4A	CCDS7101.1	r.?	-	-	Del	intronic	D	13912087	13912090	1	18	367.534	-	-	2	1	1	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	5	2	6	2	33	22	33	22	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762060027	10	16810221	T	TAC	929	PASS	RSU1	CCDS7112.1	r.?	-	-	Ins	intronic	I	16810221	16810222	2	77	841.626	-	-	0	1	1	RSU1|CCDS7112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RSU1|CCDS7112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	10	6	16	8	35	27	35	27	16	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762062222	10	23927583	G	GTGGC	449	PASS	-	-	-	-	-	Ins	-	I	23927583	23927591	4	24	409.374	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	3	6	3	26	21	26	21	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762064973	10	30793105	TC	T	360	PASS	-	-	-	-	-	Del	-	D	30793105	30793107	1	12	318.47	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	5	1	5	12	29	12	29	1	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762066083	10	33847507	CCACCTG	C	319	PASS	-	-	-	-	-	Del	-	D	33847507	33847514	6	40	592.691	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	7	4	7	4	26	28	26	28	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762067930	10	42365477	TC	T	474	PASS	-	-	-	-	-	Del	-	D	42365477	42365480	1	12	592.691	-	-	2	1	1	-	-	./.	0	0	0	0	61	59	63	64	0	0	./.	11	0	18	7	313	99	313	119	18	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762069430	10	43453314	TA	T	480	PASS	-	-	-	-	-	Del	-	D	43453314	43453318	1	24	428.038	-	-	3	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	7	6	35	26	35	26	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762070628	10	49460983	GA	G	360	PASS	FRMPD2	CCDS31195.1	r.?	-	-	Del	intronic	D	49460983	49460987	1	15	323.286	-	-	3	1	1	FRMPD2|CCDS31195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD2|CCDS31195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	11	22	11	0	0	./.	4	2	6	2	30	33	30	33	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762071500	10	53222958	G	GT	780	PASS	PRKG1	CCDS7244.1	r.?	-	-	Ins	intronic	I	53222958	53222968	1	54	690.82	-	-	9	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	23	10	23	0	0	./.	8	5	9	5	31	17	31	17	9	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762071501	10	53228193	AT	A	420	PASS	PRKG1	CCDS7244.1	r.?	-	-	Del	intronic	D	53228193	53228198	1	20	377.167	-	-	4	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	22	6	22	0	0	./.	4	3	5	6	21	24	21	24	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762072038	10	54902710	AT	A	600	PASS	-	-	-	-	-	Del	-	D	54902710	54902712	1	35	536.402	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	6	4	7	16	31	16	31	4	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762072520	10	56225512	AT	A	360	PASS	PCDH15	CCDS44404.1	r.?	-	-	Del	intronic	D	56225512	56225514	1	16	323.286	-	-	1	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	4	5	24	33	24	33	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762075902	10	67034834	TC	T	540	PASS	-	-	-	-	-	Del	-	D	67034834	67034836	1	28	484.929	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	6	3	7	19	36	19	36	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762076242	10	68021952	GAA	G	540	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	68021952	68021955	2	28	484.929	-	-	2	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	6	4	7	27	35	27	35	4	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762076478	10	68798070	TC	T	960	PASS	LRRTM3	CCDS7270.1	r.?	-	-	Del	intronic	D	68798070	68798072	1	77	862.096	-	-	1	1	1	LRRTM3|CCDS7270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM3|CCDS7270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	10	6	10	20	24	20	24	6	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762077229	10	70780139	ATACAAG	A	261	PASS	KIAA1279	CCDS7284.1	r.?	-	-	Del	downstream	D	70780139	70780154	6	28	484.929	-	-	2	1	1	KIAA1279|CCDS7284.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KIAA1279|CCDS7284.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	3	6	6	9	27	27	27	27	6	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762078035	10	73394566	G	GA	540	PASS	CDH23	CCDS44429.1	r.?	-	-	Ins	intronic	I	73394566	73394570	1	28	479.511	-	-	3	1	1	CDH23|CCDS44429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH23|CCDS44429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	6	3	6	6	36	42	36	42	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762078898	10	75936331	AC	A	660	PASS	ADK	CCDS7344.1	r.?	-	-	Del	upstream	D	75936331	75936334	1	40	592.691	-	-	2	1	1	ADK|CCDS7344.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ADK|CCDS7343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	7	4	7	5	37	36	37	36	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762079689	10	78786848	C	CA	600	PASS	KCNMA1	CCDS7352.1	r.?	-	-	Ins	intronic	I	78786848	78786856	1	32	532.79	-	-	7	1	1	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	18	0	0	./.	3	7	8	11	23	36	25	36	8	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762080866	10	83193160	TC	T	420	PASS	-	-	-	-	-	Del	-	D	83193160	83193162	1	18	377.167	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	5	2	5	27	17	27	17	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762081262	10	84981380	TTCC	T	389	PASS	-	-	-	-	-	Del	-	D	84981380	84981387	3	20	375.963	-	-	2	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	3	4	3	4	23	25	23	25	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762081702	10	86383056	TG	T	360	PASS	-	-	-	-	-	Del	-	D	86383056	86383059	1	15	323.286	-	-	2	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	2	6	15	34	15	34	2	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762082562	10	89894206	ATAATCACAACTACCACAACCATGGCCACCACCATCATTATGGCCATCA	ACCACCTCACCACCACCACCACAAAGG	261	PASS	-	-	-	-	-	Complex	-	DI	89894207	89894254	48	28	0	-	-	0	1	-	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	3	6	0	0	43	27	45	33	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762082666	10	90456011	ACTG	A	298	PASS	-	-	-	-	-	Del	-	D	90456011	90456017	3	15	320.276	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	2	4	3	4	31	17	31	17	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762082872	10	91170260	TA	T	660	PASS	IFIT5	CCDS7403.1	r.?	-	-	Del	upstream	D	91170260	91170262	1	40	590.885	-	-	1	1	1	IFIT5|CCDS7403.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LIPA|ENST00000371837|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	7	6	7	26	33	26	33	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762085295	10	99216469	AG	A	480	PASS	MMS19	CCDS7464.1	r.?	-	-	Del	downstream	D	99216469	99216472	1	21	430.446	-	-	2	1	1	MMS19|CCDS7464.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZDHHC16|CCDS7460.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	6	2	6	3	24	27	24	27	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762086314	10	102330180	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	102330180	102330196	2	12	269.405	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	3	2	37	32	37	32	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762087403	10	105383022	AG	A	300	PASS	SH3PXD2A	CCDS31278.1	r.?	-	-	Del	intronic	D	105383022	105383027	1	12	268.803	-	-	4	1	1	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	3	5	5	42	33	42	33	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762087554	10	105798586	CTGTT	C	507	PASS	COL17A1	CCDS7554.1	r.?	-	-	Del	intronic	D	105798586	105798591	4	36	536.402	-	-	1	1	1	COL17A1|CCDS7554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL17A1|CCDS7554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	5	5	6	5	34	36	34	37	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762087738	10	106677578	CT	C	360	PASS	SORCS3	CCDS7558.1	r.?	-	-	Del	intronic	D	106677578	106677585	1	16	323.286	-	-	6	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	3	3	3	4	22	25	22	25	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762088887	10	111167713	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	111167713	111167716	1	28	478.909	-	-	2	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	3	6	5	7	32	34	32	36	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762089942	10	114872453	A	AT	300	PASS	TCF7L2	CCDS7576.1	r.?	-	-	Ins	intronic	I	114872453	114872457	1	12	266.395	-	-	3	1	1	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	3	2	3	6	30	42	31	43	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762092983	10	123991186	A	AG	420	PASS	TACC2	CCDS7626.1	r.?	-	-	Ins	intronic	I	123991186	123991189	1	14	372.953	-	-	2	1	1	TACC2|CCDS7626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TACC2|CCDS7626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	1	6	3	6	29	32	29	32	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762093227	10	124802763	CAGGTGTCAA	C	348	PASS	ACADSB	CCDS7634.1	r.?	-	-	Del	intronic	D	124802763	124802774	9	40	645.97	-	-	1	1	1	ACADSB|CCDS7634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACADSB|CCDS7634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	9	3	9	3	35	25	35	25	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762093297	10	125015145	CCACCACCACCACCATCACCATCATCA	C	449	PASS	-	-	-	-	-	Del	-	D	125015145	125015186	26	21	417.803	-	-	1	1	-	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	2	0	0	36	44	36	44	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762096541	10	134287551	GT	G	360	PASS	-	-	-	-	-	Del	-	D	134287551	134287553	1	7	313.051	-	-	1	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	6	0	18	0	38	17	38	17	18	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762099354	11	6476360	GC	G	540	PASS	TRIM3	CCDS7764.1	r.?	-	-	Del	intronic	D	6476360	6476363	1	24	486.397	-	-	2	1	1	TRIM3|CCDS7764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM3|CCDS7764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	2	7	3	8	23	30	23	30	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762100111	11	8944958	CTCT	C	689	PASS	C11orf16	CCDS7794.1	r.?	-	-	Del	intronic	D	8944958	8944966	3	40	648.53	-	-	2	1	1	C11orf16|CCDS7794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf16|CCDS7794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	9	5	9	21	29	21	29	5	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762101867	11	14249087	CA	C	300	PASS	SPON1	ENST00000310358	r.?	-	-	Del	intronic	D	14249087	14249089	1	12	266.006	-	-	1	1	1	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	2	3	2	4	24	22	24	22	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762106336	11	28173528	GA	G	420	PASS	METT5D1	CCDS31450.1	r.?	-	-	Del	intronic	D	28173528	28173532	1	20	378.309	-	-	3	1	1	METT5D1|CCDS31450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	METT5D1|CCDS31450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	4	5	5	23	21	23	21	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762106658	11	29419395	GC	G	540	PASS	-	-	-	-	-	Del	-	D	29419395	29419397	1	18	486.397	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	8	1	10	2	23	22	23	22	10	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762107310	11	32208741	GA	G	300	PASS	-	-	-	-	-	Del	-	D	32208741	32208747	1	12	270.221	-	-	5	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	2	7	3	27	28	27	28	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762107719	11	33235383	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	33235383	33235390	1	14	373.493	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	6	6	8	15	21	15	21	6	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762109741	11	39764134	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	39764134	39764151	2	12	270.221	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	3	35	23	35	23	3	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762109957	11	40540533	TAC	T	517	PASS	-	-	-	-	-	Del	-	D	40540533	40540537	2	30	486.397	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	4	5	6	6	25	27	25	27	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762110860	11	43576719	T	TC	900	PASS	MIR670	ENST00000390142	r.?	-	-	Ins	upstream	I	43576719	43576729	1	72	795.009	-	-	9	1	1	MIR670|ENST00000390142|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	MIR670|ENST00000390142|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	8	14	9	14	0	0	./.	8	7	9	14	22	35	22	35	9	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762111320	11	45172368	GT	G	300	PASS	PRDM11	CCDS7912.1	r.?	-	-	Del	intronic	D	45172368	45172375	1	12	270.221	-	-	6	1	1	PRDM11|CCDS7912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDM11|CCDS7912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	3	3	4	18	28	18	28	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762113659	11	55794410	C	CA	360	PASS	OR5AS1	CCDS31516.1	r.?	-	-	Ins	upstream	I	55794410	55794414	1	16	320.653	-	-	3	1	1	OR5AS1|CCDS31516.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	OR5AS1|CCDS31516.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	5	11	5	0	0	./.	3	3	9	6	19	18	19	18	9	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762113993	11	57294342	CGT	C	809	PASS	TIMM10	CCDS7959.1	r.?	-	-	Del	downstream	D	57294342	57294347	2	63	753.608	-	-	2	1	1	TIMM10|CCDS7959.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TIMM10|CCDS7959.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	6	8	6	0	0	./.	6	8	7	10	18	19	18	19	7	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762114171	11	58097366	AT	A	1620	PASS	-	-	-	-	-	Del	-	D	58097366	58097369	1	180	1457.99	-	-	2	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	8	19	12	24	23	31	23	31	12	24	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762117528	11	69895837	GT	G	720	PASS	-	-	-	-	-	Del	-	D	69895837	69895845	1	49	647.326	-	-	7	1	-	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	6	6	9	11	30	31	30	31	9	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762117861	11	70860559	GACA	GAT	600	PASS	SHANK2	ENST00000338508	r.?	-	-	Complex	upstream	DI	70860560	70860562	3	35	0	-	-	0	1	1	SHANK2|ENST00000338508|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	SHANK2|ENST00000413503|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	3	8	3	8	0	0	./.	4	6	0	0	25	37	25	37	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762118210	11	71914038	C	CT	749	PASS	-	-	-	-	-	Ins	-	I	71914038	71914046	1	56	694.747	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	7	6	10	11	37	28	38	28	10	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762119152	11	74698373	CA	C	360	PASS	NEU3	CCDS44682.1	r.?	-	-	Del	upstream	D	74698373	74698375	1	15	323.061	-	-	1	1	1	NEU3|CCDS44682.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NEU3|CCDS44682.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	4	4	15	27	15	27	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762122000	11	84630584	GA	G	420	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	84630584	84630586	1	18	378.309	-	-	1	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	2	5	2	29	33	29	33	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762124251	11	92915888	AAAGCACAGT	A	319	PASS	SLC36A4	CCDS8291.1	r.?	-	-	Del	intronic	D	92915888	92915899	9	42	594.486	-	-	1	1	1	SLC36A4|CCDS8291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC36A4|CCDS8291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	5	6	5	5	16	20	16	21	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762124630	11	94442016	CAATT	C	778	PASS	-	-	-	-	-	Del	-	D	94442016	94442021	4	63	756.618	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	8	6	8	6	20	11	20	11	8	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762126517	11	101564457	GA	G	480	PASS	-	-	-	-	-	Del	-	D	101564457	101564459	1	24	432.353	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	5	3	8	4	19	6	19	6	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762127083	11	103637044	TAA	T	629	PASS	-	-	-	-	-	Del	-	D	103637044	103637050	2	42	594.486	-	-	5	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	5	6	7	9	20	31	20	31	7	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762132542	11	123648340	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	123648340	123648343	1	35	534.421	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	6	8	8	33	24	34	25	8	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762134685	11	130053768	ACACCC	A	509	PASS	ST14	CCDS8487.1	r.?	-	-	Del	intronic	D	130053768	130053776	5	30	483.989	-	-	1	1	1	ST14|CCDS8487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST14|CCDS8487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	5	4	7	4	43	24	43	24	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762140650	12	13036779	T	TGA	360	PASS	-	-	-	-	-	Ins	-	I	13036779	13036782	2	15	312.251	-	-	1	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	2	4	5	8	26	29	27	29	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762143548	12	22627943	G	GA	420	PASS	KIAA0528	CCDS31758.1	r.?	-	-	Ins	intronic	I	22627943	22627946	1	14	374.126	-	-	2	1	1	KIAA0528|CCDS31758.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0528|CCDS31758.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	1	7	2	27	12	28	12	7	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762145336	12	28169329	GT	G	540	PASS	-	-	-	-	-	Del	-	D	28169329	28169335	1	30	486.438	-	-	5	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	5	4	6	32	31	32	31	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762147577	12	37930764	CA	C	905	PASS	-	-	-	-	-	Del	-	D	37930764	37930769	1	72	864.779	-	-	4	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	5	11	10	15	22	21	22	21	10	15	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762147683	12	38409460	AAC	A	420	PASS	-	-	-	-	-	Del	-	D	38409460	38409465	2	14	378.341	-	-	2	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	1	7	1	24	14	24	14	7	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762147962	12	39506827	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	39506827	39506836	1	60	746.447	-	-	8	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	5	9	9	9	27	21	29	21	9	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762150018	12	47191836	C	CTAAG	445	PASS	SLC38A4	CCDS8750.1	r.?	-	-	Ins	intronic	I	47191836	47191837	4	35	513.996	-	-	0	1	1	SLC38A4|CCDS8750.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SLC38A4|CCDS8750.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	6	4	5	23	28	24	29	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762152439	12	54488075	AT	A	288	PASS	-	-	-	-	-	Del	-	D	54488075	54488080	1	13	648.584	-	-	4	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	12	0	14	1	39	31	39	31	14	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762155616	12	65213577	AG	A	718	PASS	TBC1D30	ENST00000229088	r.?	-	-	Del	intronic	D	65213577	65213579	1	50	702.633	-	-	1	1	1	TBC1D30|ENST00000229088|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D30|ENST00000229088|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	9	4	10	6	34	30	34	30	10	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762158076	12	73911946	CTTA	C	329	PASS	-	-	-	-	-	Del	-	D	73911946	73911953	3	12	324.292	-	-	2	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	1	5	1	6	8	23	8	23	1	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762158607	12	75858222	TTATTAATTCTGAGTTCTAATTTGA	T	435	PASS	-	-	-	-	-	Del	-	D	75858222	75858248	24	70	808.322	-	-	1	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	9	6	7	5	30	26	33	27	10	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762158905	12	76906851	AGCAT	A	298	PASS	OSBPL8	CCDS31862.1	r.?	-	-	Del	intronic	D	76906851	76906858	4	15	324.292	-	-	1	1	1	OSBPL8|CCDS31862.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OSBPL8|CCDS31862.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	9	3	27	19	27	19	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762159894	12	80615239	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	80615239	80615241	1	12	318.874	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	1	6	6	21	20	22	20	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762161373	12	87028781	AG	A	540	PASS	-	-	-	-	-	Del	-	D	87028781	87028783	1	28	485.234	-	-	1	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	3	6	4	9	23	20	23	20	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762162318	12	91297546	AC	A	300	PASS	-	-	-	-	-	Del	-	D	91297546	91297549	1	10	270.243	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	4	4	19	29	19	29	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762164067	12	96270526	AC	A	780	PASS	CCDC38	CCDS9056.1	r.?	-	-	Del	intronic	D	96270526	96270529	1	54	702.633	-	-	2	1	1	CCDC38|CCDS9056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC38|CCDS9056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	8	5	10	13	21	32	21	32	10	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762166218	12	104282923	GT	G	478	PASS	-	-	-	-	-	Del	-	D	104282923	104282925	1	30	483.428	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	5	6	5	24	29	24	29	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762166730	12	105968177	AC	A	360	PASS	-	-	-	-	-	Del	-	D	105968177	105968179	1	12	324.292	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	1	5	1	23	24	23	24	5	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762166737	12	105991031	AC	A	360	PASS	-	-	-	-	-	Del	-	D	105991031	105991035	1	16	324.292	-	-	3	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	3	3	4	15	19	15	19	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762166761	12	106068779	TC	T	660	PASS	-	-	-	-	-	Del	-	D	106068779	106068781	1	42	587.913	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	6	5	7	5	28	30	28	30	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762167254	12	108087116	G	GT	540	PASS	PWP1	CCDS9114.1	r.?	-	-	Ins	intronic	I	108087116	108087126	1	30	468.376	-	-	9	1	1	PWP1|CCDS9114.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PWP1|CCDS9114.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	13	12	0	0	./.	4	5	8	7	23	18	24	18	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762169114	12	114723927	AT	A	360	PASS	-	-	-	-	-	Del	-	D	114723927	114723931	1	16	324.292	-	-	3	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	3	3	5	6	23	24	23	24	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762171049	12	120901617	GGCTTTGTCCACCTAAGATA	G	348	PASS	SFRS9	CCDS9199.1	r.?	-	-	Del	intronic	D	120901617	120901638	19	45	643.768	-	-	1	1	1	SFRS9|CCDS9199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS9|CCDS9199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	8	4	8	4	41	21	41	21	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762171469	12	121746050	GT	G	600	PASS	ANAPC5	CCDS9220.1	r.2622delA	c.?	p.?	Del	3'UTR variant	D	121746050	121746053	1	32	540.487	-	-	2	1	1	ANAPC5|CCDS9220.1|r.2622delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ANAPC5|CCDS9220.1|r.2622delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	16	12	16	12	0	0	./.	7	3	9	4	33	30	33	30	9	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762172495	12	124181017	C	CA	960	PASS	TCTN2	CCDS9253.1	r.1496_1497insa	c.1368_1369insA	p.T457fs*39	Ins	frameshift	I	124181017	124181019	1	80	852.738	-	-	1	1	1	TCTN2|CCDS9253.1|r.1496_1497insa|c.1368_1369insA|p.T457fs*39|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	TCTN2|CCDS9253.1|r.1496_1497insa|c.1368_1369insA|p.T457fs*39|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	6	9	6	9	0	0	./.	7	9	9	13	23	24	23	25	9	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762173599	12	127645443	CAAT	C	296	PASS	-	-	-	-	-	Del	-	D	127645443	127645447	3	18	378.341	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	2	4	2	20	19	21	19	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762173667	12	127852642	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	127852642	127852648	1	15	320.68	-	-	5	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	2	5	2	24	20	24	20	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762180566	13	31856446	G	GT	300	PASS	B3GALTL	CCDS9341.1	r.?	-	-	Ins	intronic	I	31856446	31856454	1	12	267.688	-	-	7	1	1	B3GALTL|CCDS9341.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	B3GALTL|CCDS9341.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	5	5	10	13	11	13	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762181579	13	35838168	GAAA	G	418	PASS	NBEA	CCDS45026.1	r.?	-	-	Del	intronic	D	35838168	35838175	3	24	432.876	-	-	6	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	3	5	5	8	16	20	16	20	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762184067	13	44483105	CCTT	C	509	PASS	-	-	-	-	-	Del	-	D	44483105	44483114	3	30	488.34	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	5	4	6	17	22	17	22	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762185701	13	50664197	CAA	C	420	PASS	DLEU1	ENST00000378180	r.?	-	-	Del	intronic	D	50664197	50664202	2	20	379.82	-	-	4	1	1	DLEU1|ENST00000378180|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLEU1|ENST00000378180|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	4	3	11	11	11	11	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762188056	13	60378018	ACAGAATTT	A	319	PASS	DIAPH3	CCDS41898.1	r.?	-	-	Del	intronic	D	60378018	60378030	8	40	596.86	-	-	1	1	1	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	7	4	6	6	18	15	19	15	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762191458	13	71788342	TG	T	300	PASS	-	-	-	-	-	Del	-	D	71788342	71788345	1	12	271.3	-	-	2	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	3	15	10	15	10	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762191824	13	73297861	TTG	T	360	PASS	C13orf34	CCDS9446.1	r.?	-	-	Del	upstream	D	73297861	73297866	2	16	325.56	-	-	2	1	1	C13orf34|CCDS9446.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C13orf37|CCDS31990.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	3	3	5	4	13	16	13	16	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762191941	13	73764278	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	73764278	73764286	1	24	428.06	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	16	13	0	0	./.	5	3	5	5	20	15	20	15	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762193744	13	80476020	ACTGGTGG	A	261	PASS	-	-	-	-	-	Del	-	D	80476020	80476029	7	28	488.34	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	3	6	4	8	18	22	18	22	4	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762198118	13	96440246	AAG	A	360	PASS	DNAJC3	CCDS9479.1	r.?	-	-	Del	intronic	D	96440246	96440253	2	15	324.958	-	-	3	1	1	DNAJC3|CCDS9479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC3|CCDS9479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	4	2	5	4	15	12	15	12	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762200177	13	103865919	CT	C	300	PASS	-	-	-	-	-	Del	-	D	103865919	103865921	1	12	271.3	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	4	4	12	20	12	20	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762201776	13	109290546	AG	A	360	PASS	MYO16	CCDS32008.1	r.?	-	-	Del	intronic	D	109290546	109290550	1	16	325.56	-	-	3	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	5	4	10	13	10	13	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762202221	13	110679032	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	110679032	110679039	2	15	325.56	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	4	2	16	17	16	17	4	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762203161	13	114487480	CAG	C	300	PASS	FAM70B	CCDS45071.1	r.?	-	-	Del	intronic	D	114487480	114487498	2	12	266.484	-	-	8	1	1	FAM70B|CCDS45071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM70B|CCDS45071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	3	2	27	22	27	22	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762207896	14	32940775	TCTC	T	565	PASS	AKAP6	CCDS9644.1	r.?	-	-	Del	intronic	D	32940775	32940781	3	40	650.396	-	-	1	1	1	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	9	3	10	41	34	41	34	3	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762210705	14	41216249	TG	T	360	PASS	-	-	-	-	-	Del	-	D	41216249	41216254	1	12	323.994	-	-	4	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	5	1	8	1	41	13	41	13	8	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762211920	14	45305638	A	ACT	329	PASS	-	-	-	-	-	Ins	-	I	45305638	45305641	2	16	316.167	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	3	3	6	4	31	35	33	35	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762214820	14	53492141	G	GCTTTC	447	PASS	-	-	-	-	-	Ins	-	I	53492141	53492148	5	28	460.704	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	16	8	0	0	./.	3	6	5	7	37	49	37	51	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762215697	14	56233190	TC	T	449	PASS	-	-	-	-	-	Del	-	D	56233190	56233194	1	24	426.372	-	-	3	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	5	3	5	3	33	36	33	36	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762217268	14	61033315	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	61033315	61033318	2	10	270.998	-	-	1	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	2	7	24	29	24	29	2	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762218572	14	64398279	A	AG	389	PASS	SYNE2	CCDS9761.2	r.?	-	-	Ins	intronic	I	64398279	64398280	1	20	352.907	-	-	0	1	-	SYNE2|CCDS9761.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYNE2|CCDS9761.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	7	6	21	11	22	11	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762220474	14	70517362	CA	C	540	PASS	SLC8A3	CCDS35498.1	r.?	-	-	Del	intronic	D	70517362	70517366	1	18	486.592	-	-	3	1	1	SLC8A3|CCDS35498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC8A3|CCDS35498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	1	8	1	9	28	35	28	35	1	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762220623	14	70940469	GC	G	600	PASS	-	-	-	-	-	Del	-	D	70940469	70940472	1	20	540.792	-	-	2	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	1	9	1	9	6	41	6	41	1	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762223780	14	79005808	CT	C	439	PASS	-	-	-	-	-	Del	-	D	79005808	79005817	1	21	433.597	-	-	8	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	2	6	2	10	25	28	25	28	2	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762225920	14	88283386	A	AAT	420	PASS	-	-	-	-	-	Ins	-	I	88283386	88283388	2	20	369.162	-	-	0	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	7	6	23	17	23	18	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762228344	14	97720246	CTAAAA	C	418	PASS	-	-	-	-	-	Del	-	D	97720246	97720253	5	25	433.597	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	4	6	5	21	18	21	18	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762230409	14	106089328	G	GGGGGACAGCGTCAGGGACAGGTGGGGACAGCCT	286	PASS	-	-	-	-	-	Ins	-	I	106089328	106089337	33	35	339.102	-	-	0	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	6	4	0	0	45	23	51	25	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762230919	14	107083457	A	ACCACTG	285	PASS	-	-	-	-	-	Ins	-	I	107083457	107083459	6	52	757.605	-	-	0	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	12	3	14	4	33	21	33	21	14	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762231227	15	20121011	CA	C	345	PASS	-	-	-	-	-	Del	-	D	20121011	20121015	1	56	704.88	-	-	3	1	1	-	-	./.	0	0	0	0	44	59	44	60	0	0	./.	7	6	15	10	265	233	265	236	15	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762231859	15	21905349	G	GC	600	PASS	-	-	-	-	-	Ins	-	I	21905349	21905352	1	27	535.315	-	-	2	1	1	-	-	./.	0	0	0	0	40	28	40	28	0	0	./.	8	2	10	3	68	38	68	39	10	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762232671	15	24190795	TAGGTA	T	360	PASS	-	-	-	-	-	Del	-	D	24190795	24190801	5	16	325.885	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	5	11	20	11	20	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762232915	15	24796104	AG	A	477	PASS	-	-	-	-	-	Del	-	D	24796104	24796107	1	24	432.707	-	-	2	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	5	3	7	5	21	21	21	21	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762234317	15	30372750	T	TTC	275	PASS	ENSG00000179938	ENST00000341650	r.?	-	-	Ins	upstream	I	30372750	30372754	2	15	318.66	-	-	1	1	1	ENSG00000179938|ENST00000341650|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000179938|ENST00000341650|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	3	9	13	25	13	25	3	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762241006	15	56549614	TA	T	300	PASS	-	-	-	-	-	Del	-	D	56549614	56549619	1	12	269.765	-	-	4	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	2	5	20	18	20	18	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762242041	15	60303994	CACT	C	418	PASS	-	-	-	-	-	Del	-	D	60303994	60303998	3	16	434.513	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	7	1	7	3	11	17	11	17	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762247588	15	82400894	CT	C	885	PASS	-	-	-	-	-	Del	-	D	82400894	82400900	1	42	813.508	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	13	2	15	2	20	10	20	10	15	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762250888	15	95617867	GAATGC	G	358	PASS	-	-	-	-	-	Del	-	D	95617867	95617877	5	20	377.189	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	5	3	24	17	24	17	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762251286	15	97336011	CA	C	360	PASS	-	-	-	-	-	Del	-	D	97336011	97336014	1	15	325.885	-	-	2	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	4	2	7	5	17	20	17	20	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762251389	15	97621156	CT	C	480	PASS	-	-	-	-	-	Del	-	D	97621156	97621159	1	21	433.309	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	6	2	6	19	13	19	13	2	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762253044	16	592071	A	AGGACGTGGCTGGCTGGGTTTGCCTTGTGCAGAAGGTGCGT	261	PASS	SOLH	CCDS10410.1	r.?	-	-	Ins	intronic	I	592071	592080	40	30	269.263	-	-	0	1	1	SOLH|CCDS10410.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SOLH|CCDS10410.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	5	4	0	0	31	47	33	47	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762253139	16	976912	GGTC	G	656	PASS	LMF1	CCDS45373.1	r.?	-	-	Del	intronic	D	976912	976916	3	54	697.725	-	-	1	1	1	LMF1|CCDS45373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMF1|CCDS45373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	8	6	9	41	37	41	37	6	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762253330	16	1537176	A	AC	447	PASS	C16orf38	CCDS32362.1	r.?	-	-	Ins	intronic	I	1537176	1537185	1	28	478.78	-	-	8	1	1	C16orf38|CCDS32362.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C16orf38|CCDS32362.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	12	13	0	0	./.	3	6	4	6	51	32	51	32	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762253982	16	3420358	AT	A	600	PASS	-	-	-	-	-	Del	-	D	3420358	3420360	1	35	541.343	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	4	6	7	20	28	20	28	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762254492	16	4682901	CG	C	420	PASS	MGRN1	CCDS45402.1	r.?	-	-	Del	intronic	D	4682901	4682904	1	18	377.134	-	-	2	1	1	MGRN1|CCDS45402.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGRN1|CCDS45402.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	2	7	4	30	29	30	29	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762256326	16	8977454	AAACACACCACC	A	261	PASS	-	-	-	-	-	Del	-	D	8977454	8977466	11	30	486.004	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	5	4	5	35	25	35	25	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762258379	16	13682068	CAATT	C	267	PASS	-	-	-	-	-	Del	-	D	13682068	13682075	4	15	324.806	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	2	5	2	25	22	25	22	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762260846	16	20929823	GA	G	540	PASS	LYRM1	CCDS10593.1	r.?	-	-	Del	intronic	D	20929823	20929829	1	28	487.209	-	-	5	1	1	LYRM1|CCDS10593.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LYRM1|CCDS10593.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	6	3	9	19	30	19	30	3	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762261675	16	23671291	GA	G	360	PASS	DCTN5	CCDS10615.1	r.?	-	-	Del	intronic	D	23671291	23671294	1	7	324.806	-	-	2	1	1	DCTN5|CCDS10615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCTN5|CCDS10615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	6	0	7	1	25	34	25	34	7	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762262194	16	24814701	C	CT	360	PASS	TNRC6A	CCDS10624.2	r.?	-	-	Ins	intronic	I	24814701	24814703	1	12	313.367	-	-	1	1	1	TNRC6A|CCDS10624.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TNRC6A|CCDS10624.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	1	5	3	7	21	35	21	36	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762263125	16	27169987	TA	T	660	PASS	-	-	-	-	-	Del	-	D	27169987	27169989	1	42	593.671	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	6	6	9	31	43	31	43	6	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762264680	16	31814342	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	31814342	31814346	1	20	374.726	-	-	3	1	1	-	-	./.	0	0	0	0	8	2	8	2	0	0	./.	3	4	12	6	50	34	50	34	12	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762268504	16	49350294	GAATTGAAAAAGGAAC	G	261	PASS	-	-	-	-	-	Del	-	D	49350294	49350312	15	28	487.209	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	3	6	2	29	29	29	30	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762269102	16	51208886	TC	T	1440	PASS	-	-	-	-	-	Del	-	D	51208886	51208890	1	165	1299.22	-	-	3	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	10	14	12	20	37	44	37	44	12	20	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762269115	16	51252366	GA	G	300	PASS	-	-	-	-	-	Del	-	D	51252366	51252376	1	12	270.671	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	3	3	23	27	23	27	3	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762270570	16	55859618	GA	G	629	PASS	CES1	CCDS32450.1	r.?	-	-	Del	intronic	D	55859618	55859620	1	42	594.273	-	-	1	1	1	CES1|CCDS32450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CES1|CCDS32450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	6	5	8	8	36	44	36	44	8	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762271011	16	57262822	GTC	G	300	PASS	RSPRY1	CCDS10775.1	r.?	-	-	Del	intronic	D	57262822	57262827	2	10	270.671	-	-	2	1	1	RSPRY1|CCDS10775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSPRY1|CCDS10775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	5	2	35	15	35	15	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762273226	16	63392995	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	63392995	63393004	1	10	265.253	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	8	13	0	0	./.	4	1	6	2	22	22	22	22	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762273814	16	65418794	GGC	G	360	PASS	AC009055.1	ENST00000505989	r.?	-	-	Del	intronic	D	65418794	65418797	2	15	321.795	-	-	1	1	1	AC009055.1|ENST00000505989|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC009055.1|ENST00000505989|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	4	23	36	23	36	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762275665	16	72245283	TTCCCCATACAAACATTC	T	261	PASS	-	-	-	-	-	Del	-	D	72245283	72245303	17	28	487.209	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	6	4	6	22	13	22	13	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762282193	17	3795499	C	CCA	629	PASS	CAMKK1	CCDS11038.1	r.?	-	-	Ins	intronic	I	3795499	3795501	2	42	572.596	-	-	0	1	1	CAMKK1|CCDS11038.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CAMKK1|CCDS11038.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	6	5	11	7	21	22	21	23	11	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762286222	17	16485555	GC	G	360	PASS	-	-	-	-	-	Del	-	D	16485555	16485558	1	15	325.132	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	2	5	2	20	31	20	31	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762289891	17	28165928	ACGTGCC	A	435	PASS	SSH2	CCDS11253.1	r.?	-	-	Del	intronic	D	28165928	28165936	6	72	807.412	-	-	1	1	1	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	8	7	8	7	43	32	43	32	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762290496	17	29844652	TGC	T	360	PASS	RAB11FIP4	CCDS11267.1	r.?	-	-	Del	intronic	D	29844652	29844655	2	12	325.132	-	-	1	1	1	RAB11FIP4|CCDS11267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB11FIP4|CCDS11267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	1	8	2	35	21	35	21	8	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762293299	17	38941797	AGTC	A	478	PASS	KRT27	CCDS11375.1	r.?	-	-	Del	upstream	D	38941797	38941801	3	18	487.699	-	-	1	1	1	KRT27|CCDS11375.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KRT27|CCDS11375.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	12	6	12	0	0	./.	8	1	11	2	32	16	32	16	11	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762294015	17	40997074	AC	A	480	PASS	AOC2	CCDS11443.1	r.467delC	c.432delC	p.S146fs*6	Del	frameshift	D	40997074	40997079	1	24	432.908	-	-	4	1	1	AOC2|CCDS11443.1|r.467delC|c.432delC|p.S146fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	AOC2|CCDS11443.1|r.467delC|c.432delC|p.S146fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	9	10	9	0	0	./.	3	5	3	5	34	47	34	47	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762300595	17	61571686	CT	C	540	PASS	ACE	CCDS11637.1	r.?	-	-	Del	intronic	D	61571686	61571688	1	30	487.699	-	-	1	1	1	ACE|CCDS11637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACE|CCDS11637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	5	6	9	28	39	28	39	6	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762301481	17	64298925	CG	C	540	PASS	PRKCA	CCDS11664.1	r.1delG	c.?	p.?	Del	5'UTR variant	D	64298925	64298928	1	30	468.433	-	-	2	1	1	PRKCA|CCDS11664.1|r.1delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	PRKCA|CCDS11664.1|r.1delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	9	6	9	6	0	0	./.	5	4	10	7	25	14	25	14	10	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762305297	17	74828971	CA	C	277	PASS	-	-	-	-	-	Del	-	D	74828971	74828977	1	10	270.944	-	-	5	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	4	1	7	1	31	14	31	14	7	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762305406	17	75065275	AC	A	540	PASS	-	-	-	-	-	Del	-	D	75065275	75065279	1	28	485.892	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	6	8	7	29	27	29	27	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762306194	17	77203004	CAT	C	503	PASS	ENSG00000167281	CCDS45805.1	r.?	-	-	Del	intronic	D	77203004	77203007	2	24	650.265	-	-	1	1	1	ENSG00000167281|CCDS45805.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000167281|CCDS45805.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	11	3	14	26	40	26	40	3	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762306565	17	78332926	A	AC	300	PASS	RNF213	CCDS32761.1	r.?	-	-	Ins	intronic	I	78332926	78332932	1	12	267.331	-	-	5	1	1	RNF213|CCDS32761.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF213|CCDS32761.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	3	5	6	16	20	18	20	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762309206	18	3846660	T	TA	480	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Ins	intronic	I	3846660	3846666	1	24	429.699	-	-	5	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	5	3	9	4	23	11	23	11	9	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762309497	18	4996119	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	4996119	4996122	1	18	375.986	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	5	3	5	23	23	23	23	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762311381	18	12247879	GCA	G	598	PASS	-	-	-	-	-	Del	-	D	12247879	12247883	2	42	597.458	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	5	7	8	15	20	15	20	7	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762312875	18	20108270	CTTTCAA	C	290	PASS	-	-	-	-	-	Del	-	D	20108270	20108279	6	32	537.124	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	3	8	4	26	18	26	18	9	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762314853	18	28561790	AG	A	900	PASS	-	-	-	-	-	Del	-	D	28561790	28561794	1	72	814.716	-	-	3	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	8	7	9	7	13	14	13	14	9	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762317911	18	41764322	CT	C	480	PASS	-	-	-	-	-	Del	-	D	41764322	41764332	1	24	434.515	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	3	7	3	20	16	20	16	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762318577	18	45074157	CACCTG	C	478	PASS	-	-	-	-	-	Del	-	D	45074157	45074163	5	30	488.83	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	4	6	5	25	16	25	16	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762319227	18	47649933	C	CA	480	PASS	MYO5B	CCDS42436.1	r.?	-	-	Ins	intronic	I	47649933	47649940	1	24	429.699	-	-	6	1	1	MYO5B|CCDS42436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO5B|CCDS42436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	5	6	7	15	13	15	13	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762319451	18	48661621	TG	T	389	PASS	-	-	-	-	-	Del	-	D	48661621	48661625	1	20	371.17	-	-	3	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	3	6	4	18	11	18	11	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762324568	18	67418215	AT	A	720	PASS	DOK6	CCDS32841.1	r.?	-	-	Del	intronic	D	67418215	67418218	1	48	649.967	-	-	2	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	5	7	5	7	13	22	13	22	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762327828	19	1147271	TGCCCCCCACGG	T	261	PASS	SBNO2	CCDS45894.1	r.?	-	-	Del	intronic	D	1147271	1147283	11	24	486.868	-	-	1	1	1	SBNO2|CCDS45894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SBNO2|CCDS45894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	7	2	7	31	46	31	47	2	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762328202	19	2072194	CTT	C	329	PASS	MOBKL2A	CCDS12081.1	r.2205_2206delAA	c.?	p.?	Del	3'UTR variant	D	2072194	2072199	2	16	323.174	-	-	4	1	1	MOBKL2A|CCDS12081.1|r.2205_2206delAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MOBKL2A|CCDS12081.1|r.2205_2206delAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	5	5	27	26	27	26	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762329214	19	4314605	TC	T	660	PASS	FSD1	CCDS12127.1	r.?	-	-	Del	intronic	D	4314605	4314609	1	40	594.593	-	-	3	1	1	FSD1|CCDS12127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSD1|CCDS12127.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	7	8	9	26	28	26	28	8	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762338317	19	23314076	G	GA	360	PASS	ZNF730	ENST00000327867	r.?	-	-	Ins	intronic	I	23314076	23314084	1	15	321.368	-	-	7	1	1	ZNF730|ENST00000327867|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF730|ENST00000327867|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	2	6	4	31	17	31	17	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762341498	19	33985637	GC	G	300	PASS	PEPD	CCDS42544.1	r.?	-	-	Del	intronic	D	33985637	33985639	1	12	270.817	-	-	1	1	1	PEPD|CCDS42544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEPD|CCDS42544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	4	18	35	18	35	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762342098	19	35545945	GGCTCA	G	300	PASS	HPN	CCDS32993.1	r.?	-	-	Del	intronic	D	35545945	35545951	5	12	270.817	-	-	1	1	1	HPN|CCDS32993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPN|CCDS32993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	2	3	22	26	22	26	2	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762342157	19	35657443	CTGGG	C	480	PASS	FXYD5	CCDS12447.1	r.?	-	-	Del	intronic	D	35657443	35657450	4	25	433.307	-	-	1	1	1	FXYD5|CCDS12447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FXYD5|CCDS12447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	10	22	10	0	0	./.	4	4	4	5	21	37	21	37	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762342417	19	36249576	C	CT	629	PASS	C19orf55	CCDS46056.1	r.?	-	-	Ins	intronic	I	36249576	36249586	1	42	586.766	-	-	9	1	1	C19orf55|CCDS46056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C19orf55|CCDS46056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	5	6	7	8	30	41	30	43	7	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762342496	19	36467406	AG	A	360	PASS	-	-	-	-	-	Del	-	D	36467406	36467408	1	12	324.98	-	-	1	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	1	5	8	7	46	39	46	39	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762346724	19	46498333	CT	C	869	PASS	CCDC61	CCDS46120.1	r.?	-	-	Del	upstream	D	46498333	46498335	1	72	803.419	-	-	1	1	1	CCDC61|CCDS46120.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CCDC61|CCDS46120.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	8	14	8	0	0	./.	8	7	10	9	31	29	31	29	10	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762348135	19	49293216	GT	G	595	PASS	-	-	-	-	-	Del	-	D	49293216	49293218	1	12	583.755	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	11	0	12	0	29	20	30	20	12	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762349467	19	52483102	TA	T	480	PASS	ZNF615	CCDS12845.1	r.?	-	-	Del	intronic	D	52483102	52483104	1	24	429.092	-	-	1	1	1	ZNF615|CCDS12845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF615|CCDS12845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	5	4	7	27	36	27	36	4	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762350653	19	54663971	CTAGT	C	418	PASS	TMC4	CCDS46174.1	r.2339_2342delACUA	c.?	p.?	Del	3'UTR variant	D	54663971	54663977	4	25	432.103	-	-	1	1	1	TMC4|CCDS46174.1|r.2339_2342delACUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TMC4|CCDS46174.1|r.2339_2342delACUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	7	12	7	0	0	./.	4	4	5	8	51	40	51	40	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762354026	2	5179158	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	5179158	5179166	1	20	372.761	-	-	7	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	3	4	5	7	36	25	36	25	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762354615	2	7568498	GT	G	300	PASS	ENSG00000234603	ENST00000441133	r.?	-	-	Del	intronic	D	7568498	7568500	1	12	269.268	-	-	1	1	1	ENSG00000234603|ENST00000441133|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000234603|ENST00000441133|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	2	4	19	21	19	21	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762355802	2	11682049	AG	A	480	PASS	GREB1	CCDS42655.1	r.?	-	-	Del	intronic	D	11682049	11682051	1	24	430.829	-	-	1	1	1	GREB1|CCDS42655.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREB1|CCDS42655.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	5	3	6	5	17	16	17	16	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762356339	2	13816954	ATC	A	540	PASS	-	-	-	-	-	Del	-	D	13816954	13816958	2	30	483.479	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	4	8	6	18	14	18	14	8	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762356944	2	16199775	GA	G	420	PASS	-	-	-	-	-	Del	-	D	16199775	16199780	1	14	374.568	-	-	4	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	6	1	6	2	21	14	21	14	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762361978	2	36545977	ATGG	A	358	PASS	-	-	-	-	-	Del	-	D	36545977	36545981	3	18	372.761	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	2	5	3	15	15	15	15	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762362082	2	36939121	GC	G	540	PASS	VIT	CCDS33180.1	r.?	-	-	Del	intronic	D	36939121	36939126	1	30	484.683	-	-	4	1	1	VIT|CCDS33180.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	VIT|CCDS33180.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	4	6	4	13	15	13	15	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762363595	2	42080884	ACG	A	1080	PASS	-	-	-	-	-	Del	-	D	42080884	42080888	2	99	966.356	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	8	10	12	10	23	19	23	19	12	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762365466	2	49623298	TGTATTAG	T	356	PASS	-	-	-	-	-	Del	-	D	49623298	49623306	7	45	645.642	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	4	8	4	8	19	16	20	16	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762366138	2	52740389	AC	A	660	PASS	-	-	-	-	-	Del	-	D	52740389	52740391	1	42	591.186	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	5	9	5	17	13	17	13	9	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762368441	2	62660578	A	AAGG	449	PASS	-	-	-	-	-	Ins	-	I	62660578	62660583	3	24	415.778	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	5	3	5	4	17	15	17	15	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762368686	2	63903706	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	63903706	63903716	1	54	692.271	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	8	6	11	22	20	22	20	6	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762369133	2	65668070	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	65668070	65668079	1	40	574.931	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	4	11	8	19	15	19	15	11	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762371054	2	74516318	CT	C	840	PASS	SLC4A5	CCDS1936.1	r.?	-	-	Del	intronic	D	74516318	74516320	1	60	753.952	-	-	1	1	1	SLC4A5|CCDS1936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC4A5|CCDS1936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	5	9	6	13	11	18	11	18	6	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762371233	2	75430431	AGGGCCCAG	A	261	PASS	TACR1	CCDS1958.1	r.?	-	-	Del	upstream	D	75430431	75430440	8	24	484.683	-	-	1	1	1	TACR1|CCDS1958.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TACR1|CCDS1958.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	20	12	20	0	0	./.	7	2	8	3	19	9	20	9	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762375793	2	95598635	C	CA	834	PASS	-	-	-	-	-	Ins	-	I	95598635	95598644	1	48	745.523	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	11	10	15	18	26	18	26	10	15	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762376043	2	97086684	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	97086684	97086688	1	12	266.258	-	-	3	1	1	-	-	./.	0	0	0	0	6	21	6	21	0	0	./.	2	3	3	5	12	19	12	19	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762377780	2	105361404	TCTTTCATA	T	377	PASS	-	-	-	-	-	Del	-	D	105361404	105361413	8	50	699.496	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	9	4	9	15	21	15	21	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762377884	2	105831373	TGAACGTTGTTCTATCTGCTTATTG	T	261	PASS	-	-	-	-	-	Del	-	D	105831373	105831399	24	30	484.683	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	5	3	4	12	16	13	17	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762380035	2	115453090	G	GA	840	PASS	DPP10	CCDS46400.1	r.?	-	-	Ins	intronic	I	115453090	115453097	1	63	745.523	-	-	6	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	8	6	8	10	18	21	18	21	8	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762382969	2	128500866	GTAA	G	958	PASS	WDR33	CCDS2150.1	r.?	-	-	Del	intronic	D	128500866	128500876	3	90	909.492	-	-	3	1	1	WDR33|CCDS2150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR33|CCDS2150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	9	8	11	10	16	10	16	10	11	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762383690	2	131874663	CCAGT	C	329	PASS	PLEKHB2	CCDS46413.1	r.?	-	-	Del	intronic	D	131874663	131874669	4	15	323.122	-	-	1	1	1	PLEKHB2|CCDS46413.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLEKHB2|CCDS46413.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	4	2	4	3	21	17	21	17	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762387694	2	146230355	AT	A	300	PASS	-	-	-	-	-	Del	-	D	146230355	146230363	1	12	269.268	-	-	7	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	2	3	3	3	14	19	14	19	3	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762390247	2	157350968	GA	G	360	PASS	GPD2	CCDS2202.1	r.?	-	-	Del	intronic	D	157350968	157350970	1	12	323.122	-	-	1	1	1	GPD2|CCDS2202.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPD2|CCDS2202.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	1	5	2	6	10	24	10	24	2	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762391145	2	161094634	ACTGC	A	718	PASS	-	-	-	-	-	Del	-	D	161094634	161094640	4	56	700.098	-	-	1	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	6	7	7	10	22	24	22	24	7	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762392809	2	169188156	GA	G	418	PASS	-	-	-	-	-	Del	-	D	169188156	169188160	1	25	430.829	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	4	5	7	17	22	17	22	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762394544	2	175224932	AAAAT	A	838	PASS	CIR1	CCDS2256.1	r.?	-	-	Del	intronic	D	175224932	175224943	4	60	807.805	-	-	2	1	1	CIR1|CCDS2256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CIR1|CCDS2256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	4	11	4	14	14	28	14	28	4	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762396385	2	182478814	TTC	T	480	PASS	CERKL	CCDS46466.1	r.?	-	-	Del	intronic	D	182478814	182478818	2	24	430.227	-	-	1	1	1	CERKL|CCDS46466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CERKL|CCDS46466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	3	7	4	16	12	16	12	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762396880	2	184557783	AACACTTAATATAAAAC	A	261	PASS	-	-	-	-	-	Del	-	D	184557783	184557801	16	28	484.683	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	3	4	2	10	10	12	11	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762397155	2	185875403	GTTAA	G	689	PASS	-	-	-	-	-	Del	-	D	185875403	185875411	4	48	635.407	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	7	5	9	6	17	15	17	15	9	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762402963	2	207334087	TTATAATCCATGTCTAC	T	493	PASS	ADAM23	CCDS2369.1	r.?	-	-	Del	intronic	D	207334087	207334105	16	84	915.513	-	-	1	1	1	ADAM23|CCDS2369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM23|CCDS2369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	11	6	9	31	21	31	23	6	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762404046	2	211226141	TCC	T	420	PASS	-	-	-	-	-	Del	-	D	211226141	211226145	2	20	372.761	-	-	3	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	4	3	8	20	26	20	26	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762406153	2	218003539	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	218003539	218003542	1	30	479.265	-	-	2	1	1	-	-	./.	0	0	0	0	12	19	13	20	0	0	./.	4	5	13	6	27	14	27	14	13	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762406308	2	218548371	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	218548371	218548388	2	12	323.122	-	-	8	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	1	5	32	33	32	33	1	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762406609	2	219513553	TAC	T	509	PASS	ZNF142	CCDS42817.1	r.1518_1519delGU	c.1076_1077delGT	p.R359fs*11	Del	frameshift	D	219513553	219513556	2	30	484.683	-	-	1	1	1	ZNF142|CCDS42817.1|r.1518_1519delGU|c.1076_1077delGT|p.R359fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZNF142|CCDS42817.1|r.1518_1519delGU|c.1076_1077delGT|p.R359fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	15	9	15	0	0	./.	5	4	7	6	39	28	39	28	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762406878	2	220451309	TAATGAGGG	T	348	PASS	-	-	-	-	-	Del	-	D	220451309	220451318	8	49	645.04	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	6	6	7	21	36	21	36	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762407070	2	221032909	TG	T	689	PASS	-	-	-	-	-	Del	-	D	221032909	221032912	1	45	644.438	-	-	2	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	4	8	4	12	25	32	25	32	4	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762407129	2	221207852	CT	C	420	PASS	-	-	-	-	-	Del	-	D	221207852	221207857	1	14	376.976	-	-	4	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	1	6	1	8	18	30	18	30	1	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762409417	2	228527080	TG	T	300	PASS	-	-	-	-	-	Del	-	D	228527080	228527089	1	10	268.666	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	4	3	21	15	21	15	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762410091	2	230620232	GC	G	420	PASS	-	-	-	-	-	Del	-	D	230620232	230620236	1	20	376.976	-	-	3	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	3	8	5	22	23	22	23	8	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762410765	2	232621075	CAT	C	360	PASS	PDE6D	CCDS33398.1	r.?	-	-	Del	intronic	D	232621075	232621080	2	16	323.122	-	-	2	1	1	PDE6D|CCDS33398.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE6D|CCDS33398.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	3	6	5	24	23	24	23	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762411550	2	235110248	AGAAAGCCCAGTAGGACCCAAGGAAGAG	A	348	PASS	-	-	-	-	-	Del	-	D	235110248	235110280	27	45	636.611	-	-	1	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	4	8	2	4	34	24	36	28	4	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762412219	2	237089479	CAT	C	360	PASS	ENSG00000233611	ENST00000415226	r.?	-	-	Del	intronic	D	237089479	237089484	2	16	323.122	-	-	2	1	1	ENSG00000233611|ENST00000415226|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000233611|ENST00000415226|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	3	5	6	19	25	19	25	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762412432	2	237943052	GACGTATGTGGGAATTCCAA	G	261	PASS	-	-	-	-	-	Del	-	D	237943052	237943074	19	30	484.683	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	5	4	4	4	23	28	24	28	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762412845	2	239358988	TCTTC	T	360	PASS	ASB1	CCDS33416.1	r.5092_5095delCUUC	c.?	p.?	Del	3'UTR variant	D	239358988	239358996	4	15	323.122	-	-	1	1	1	ASB1|CCDS33416.1|r.5092_5095delCUUC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ASB1|CCDS33416.1|r.5092_5095delCUUC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	2	4	4	5	29	26	29	26	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762412980	2	239795810	AG	A	300	PASS	ENSG00000233608	CCDS46558.1	r.1094delG	c.?	p.?	Del	3'UTR variant	D	239795810	239795812	1	12	268.064	-	-	1	1	1	ENSG00000233608|CCDS46558.1|r.1094delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ENSG00000233608|CCDS46558.1|r.1094delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	3	7	26	28	26	28	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762414939	20	3404659	A	AG	540	PASS	-	-	-	-	-	Ins	-	I	3404659	3404660	1	30	473.634	-	-	0	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	7	10	20	26	20	27	7	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762416068	20	6026122	AACAC	A	718	PASS	LRRN4	CCDS13097.1	r.?	-	-	Del	intronic	D	6026122	6026134	4	56	702.267	-	-	5	1	1	LRRN4|CCDS13097.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRN4|CCDS13097.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	6	7	10	13	41	33	41	33	10	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762416175	20	6320982	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	6320982	6320989	1	16	429.571	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	7	4	13	24	41	24	41	4	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762416273	20	6740743	A	ACCTTC	290	PASS	-	-	-	-	-	Ins	-	I	6740743	6740750	5	32	512.881	-	-	1	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	7	3	8	3	37	21	39	21	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762417256	20	9875394	TA	T	840	PASS	-	-	-	-	-	Del	-	D	9875394	9875402	1	63	760.178	-	-	7	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	8	6	9	8	36	27	36	27	9	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762417554	20	10691832	TGCCTG	T	360	PASS	-	-	-	-	-	Del	-	D	10691832	10691838	5	15	325.791	-	-	1	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	4	4	31	31	31	31	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762417594	20	10851872	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	10851872	10851882	2	6	271.492	-	-	4	1	-	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	0	5	2	5	30	36	30	36	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762417730	20	11327144	A	ATGC	360	PASS	-	-	-	-	-	Ins	-	I	11327144	11327148	3	16	313.749	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	3	4	23	37	23	38	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762419794	20	17706160	CAT	C	660	PASS	BANF2	CCDS13129.1	r.?	-	-	Del	intronic	D	17706160	17706163	2	42	587.65	-	-	1	1	1	BANF2|CCDS13129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BANF2|CCDS13129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	5	6	7	7	38	33	38	33	7	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762421811	20	25097641	TGGGATCTG	T	261	PASS	-	-	-	-	-	Del	-	D	25097641	25097651	8	30	484.471	-	-	1	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	4	5	5	6	42	42	42	43	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762425189	20	33433167	AGG	A	660	PASS	GGT7	CCDS13242.2	r.1996_1997delCC	c.1951_1952delCC	p.P651fs*98	Del	frameshift	D	33433167	33433171	2	36	594.272	-	-	3	1	1	GGT7|CCDS13242.2|r.1996_1997delCC|c.1951_1952delCC|p.P651fs*98|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	GGT7|CCDS13242.2|r.1996_1997delCC|c.1951_1952delCC|p.P651fs*98|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	8	9	8	0	0	./.	8	3	9	4	40	21	40	21	9	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762425632	20	34640442	CT	C	480	PASS	-	-	-	-	-	Del	-	D	34640442	34640444	1	21	434.387	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	2	6	2	10	18	39	18	39	2	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762426113	20	36075142	C	CTTCCTTCCTTCCTTCTTCCCTCCTTTCT	300	PASS	-	-	-	-	-	Ins	-	I	36075142	36075158	28	10	187.204	-	-	0	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	1	0	0	40	43	40	44	4	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762426735	20	38364285	GT	G	360	PASS	-	-	-	-	-	Del	-	D	38364285	38364290	1	15	325.791	-	-	4	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	4	3	5	28	42	28	42	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762427319	20	40820163	CAA	C	629	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	40820163	40820168	2	42	597.283	-	-	4	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	6	6	7	28	29	28	29	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762428338	20	44088339	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	44088339	44088342	1	16	322.178	-	-	2	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	3	5	6	31	38	31	38	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762431334	20	51812325	CAGGTAAA	C	261	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	51812325	51812333	7	24	488.686	-	-	1	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	7	2	8	2	38	41	39	41	9	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762433552	20	58042537	AG	A	360	PASS	-	-	-	-	-	Del	-	D	58042537	58042541	1	15	325.188	-	-	3	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	2	4	4	9	31	30	31	30	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762435147	21	9450612	AT	A	425	PASS	-	-	-	-	-	Del	-	D	9450612	9450618	1	96	1088.78	-	-	5	1	1	-	-	./.	0	0	0	0	50	71	50	71	0	0	./.	5	15	4	10	59	368	59	368	5	15	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762438225	21	11119855	TCTC	T	774	PASS	-	-	-	-	-	Del	-	D	11119855	11119862	3	80	869.823	-	-	2	1	1	-	-	./.	0	0	0	0	106	87	106	87	0	0	./.	9	7	12	10	249	197	249	197	12	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762442034	21	23939016	GATCCATCCA	G	406	PASS	-	-	-	-	-	Del	-	D	23939016	23939026	9	60	762.148	-	-	1	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	9	5	9	5	17	9	17	9	9	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762443841	21	29937750	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	29937750	29937758	1	80	861.394	-	-	7	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	7	9	10	14	22	27	22	28	10	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762446735	21	40472311	T	TG	780	PASS	-	-	-	-	-	Ins	-	I	40472311	40472313	1	44	699.883	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	11	0	0	./.	3	10	6	11	15	27	15	28	6	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762447812	21	43857579	CT	C	900	PASS	UBASH3A	CCDS13687.1	r.?	-	-	Del	intronic	D	43857579	43857585	1	72	814.781	-	-	5	1	1	UBASH3A|CCDS13687.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBASH3A|CCDS13687.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	7	8	11	9	22	22	22	22	11	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762450120	22	19007427	TGCTGGAGTGGCAGCTG	T	783	PASS	-	-	-	-	-	Del	-	D	19007427	19007445	16	198	1475.24	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	10	17	0	0	17	28	17	31	10	17	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762451690	22	25070351	G	GT	511	PASS	-	-	-	-	-	Ins	-	I	25070351	25070359	1	32	540.364	-	-	7	1	1	-	-	./.	0	0	0	0	14	17	15	17	0	0	./.	3	7	5	8	17	16	17	16	5	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762456765	22	43655916	AG	A	660	PASS	SCUBE1	CCDS14048.1	r.?	-	-	Del	intronic	D	43655916	43655920	1	40	596.809	-	-	3	1	1	SCUBE1|CCDS14048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCUBE1|CCDS14048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	4	7	8	9	20	17	20	17	8	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762459820	3	2757426	TC	T	480	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2757426	2757429	1	24	430.774	-	-	2	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	10	22	10	0	0	./.	5	3	6	3	31	33	31	33	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762460026	3	3234125	GA	G	689	PASS	-	-	-	-	-	Del	-	D	3234125	3234127	1	45	646.16	-	-	1	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	4	8	6	10	46	36	46	36	6	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762460432	3	4514162	GA	G	1080	PASS	-	-	-	-	-	Del	-	D	4514162	4514172	1	84	969.241	-	-	9	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	13	5	18	17	45	39	45	39	18	17	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762460523	3	4784841	CT	C	480	PASS	ITPR1	CCDS46740.1	r.?	-	-	Del	intronic	D	4784841	4784845	1	21	430.774	-	-	3	1	1	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	2	6	5	38	33	38	33	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762460907	3	5780544	C	CCAAGGTG	667	PASS	-	-	-	-	-	Ins	-	I	5780544	5780552	7	144	1141.54	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	8	15	8	14	29	34	29	35	8	15	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762461457	3	7424591	CACAT	C	300	PASS	GRM7	CCDS43042.1	r.?	-	-	Del	intronic	D	7424591	7424598	4	12	269.234	-	-	1	1	1	GRM7|CCDS43042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM7|CCDS43042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	2	29	25	29	25	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762463334	3	12909009	CT	C	600	PASS	CAND2	ENST00000454887	r.?	-	-	Del	intronic	D	12909009	12909011	1	32	537.263	-	-	1	1	1	CAND2|ENST00000454887|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAND2|ENST00000454887|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	7	3	9	36	42	36	42	3	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762464365	3	16393590	T	TA	720	PASS	RFTN1	CCDS33712.1	r.?	-	-	Ins	intronic	I	16393590	16393591	1	45	638.936	-	-	0	1	1	RFTN1|CCDS33712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFTN1|CCDS33712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	8	4	9	8	35	55	35	56	9	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762464835	3	18377596	ATTTC	A	300	PASS	-	-	-	-	-	Del	-	D	18377596	18377603	4	12	269.234	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	4	11	21	11	21	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762466040	3	22322701	G	GTT	300	PASS	-	-	-	-	-	Ins	-	I	22322701	22322705	2	6	263.213	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	14	0	0	./.	5	0	6	4	31	27	32	28	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762467832	3	28864874	T	TCC	420	PASS	-	-	-	-	-	Ins	-	I	28864874	28864877	2	18	368.498	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	2	6	3	29	23	29	23	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762468741	3	32217190	CTATT	C	360	PASS	-	-	-	-	-	Del	-	D	32217190	32217199	4	7	323.08	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	0	8	2	38	24	38	24	8	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762469160	3	33307265	CT	C	480	PASS	-	-	-	-	-	Del	-	D	33307265	33307270	1	21	430.774	-	-	4	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	2	9	3	33	20	33	20	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762471309	3	41201124	TA	T	480	PASS	-	-	-	-	-	Del	-	D	41201124	41201126	1	24	430.774	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	3	6	5	28	33	28	33	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762473209	3	47437894	ATC	A	542	PASS	PTPN23	CCDS2754.1	r.?	-	-	Del	intronic	D	47437894	47437900	2	35	538.467	-	-	2	1	1	PTPN23|CCDS2754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN23|CCDS2754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	6	6	7	36	22	36	22	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762476337	3	57185520	GA	G	480	PASS	IL17RD	CCDS2880.2	r.?	-	-	Del	intronic	D	57185520	57185524	1	24	430.774	-	-	3	1	1	IL17RD|CCDS2880.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL17RD|CCDS2880.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	4	6	34	27	34	27	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762478594	3	64007535	AAG	A	480	PASS	PSMD6	CCDS2901.1	r.?	-	-	Del	intronic	D	64007535	64007539	2	24	421.743	-	-	1	1	1	PSMD6|CCDS2901.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMD6|CCDS2901.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	5	7	6	36	23	36	23	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762479277	3	66293155	TA	T	1020	PASS	SLC25A26	ENST00000354883	r.?	-	-	Del	intronic	D	66293155	66293162	1	78	915.394	-	-	6	1	1	SLC25A26|ENST00000354883|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A26|ENST00000354883|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	16	4	16	0	0	./.	5	12	5	15	32	43	32	43	5	15	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762479425	3	66917542	CAGA	C	478	PASS	-	-	-	-	-	Del	-	D	66917542	66917548	3	28	484.62	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	3	7	3	27	27	27	27	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762479932	3	68708866	AT	A	600	PASS	-	-	-	-	-	Del	-	D	68708866	68708870	1	35	538.467	-	-	3	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	4	6	7	7	28	31	28	31	7	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762485848	3	85551060	AAC	A	420	PASS	CADM2	ENST00000383699	r.?	-	-	Del	intronic	D	85551060	85551066	2	18	374.519	-	-	2	1	1	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	5	4	5	38	15	38	15	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762487010	3	89283988	T	TTTCCTTCCTTCCTCCCTTCTTTCCTTCTC	397	PASS	EPHA3	CCDS2922.1	r.?	-	-	Ins	intronic	I	89283988	89284002	29	14	253.505	-	-	0	1	1	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	1	6	0	0	24	47	24	47	1	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762487055	3	89740815	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	89740815	89740822	1	10	266.223	-	-	6	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	1	4	4	5	28	21	28	21	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762488168	3	96897874	CT	C	780	PASS	EPHA6	CCDS46876.1	r.?	-	-	Del	intronic	D	96897874	96897876	1	56	700.007	-	-	1	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	6	7	6	7	34	39	34	39	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762489828	3	102417882	AT	A	600	PASS	-	-	-	-	-	Del	-	D	102417882	102417886	1	32	535.457	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	7	3	8	4	34	18	34	18	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762491363	3	107077881	CCTGAA	C	290	PASS	-	-	-	-	-	Del	-	D	107077881	107077889	5	35	537.865	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	6	4	6	4	28	21	28	21	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762492694	3	111454544	GA	G	360	PASS	PHLDB2	CCDS46885.1	r.?	-	-	Del	intronic	D	111454544	111454548	1	15	323.08	-	-	3	1	1	PHLDB2|CCDS46885.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PHLDB2|CCDS46885.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	2	4	5	8	32	40	32	40	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762493404	3	113444326	C	CA	300	PASS	NAA50	CCDS2975.1	r.?	-	-	Ins	intronic	I	113444326	113444336	1	12	266.223	-	-	9	1	-	NAA50|CCDS2975.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAA50|CCDS2975.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	10	0	0	./.	3	2	3	2	39	29	39	29	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762494167	3	116046296	AT	A	420	PASS	LSAMP	CCDS2982.1	r.?	-	-	Del	intronic	D	116046296	116046301	1	18	376.927	-	-	4	1	1	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	5	3	5	25	26	25	26	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762494219	3	116182541	TGTTGA	T	358	PASS	LSAMP	ENST00000474851	r.?	-	-	Del	intronic	D	116182541	116182547	5	20	376.927	-	-	1	1	1	LSAMP|ENST00000474851|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LSAMP|ENST00000474851|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	4	4	6	24	44	24	44	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762496676	3	124408419	TTTCTAAGGA	T	319	PASS	KALRN	CCDS3028.1	r.?	-	-	Del	intronic	D	124408419	124408429	9	42	590.508	-	-	1	1	1	KALRN|CCDS3028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KALRN|CCDS3028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	6	5	6	6	23	27	23	27	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762497047	3	125172331	TTC	T	300	PASS	SNX4	CCDS3032.1	r.?	-	-	Del	intronic	D	125172331	125172335	2	6	269.234	-	-	1	1	1	SNX4|CCDS3032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX4|CCDS3032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	0	5	0	9	1	23	1	23	0	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762498780	3	131190598	AAAAT	A	387	PASS	MRPL3	CCDS3071.1	r.?	-	-	Del	intronic	D	131190598	131190604	4	24	430.774	-	-	1	1	1	MRPL3|CCDS3071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPL3|CCDS3071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	5	3	7	6	26	32	26	33	7	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762499251	3	132827839	T	TA	560	PASS	TMEM108	CCDS33858.1	r.?	-	-	Ins	intronic	I	132827839	132827846	1	40	584.487	-	-	6	1	1	TMEM108|CCDS33858.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMEM108|CCDS33858.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	7	5	7	20	19	20	19	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762499591	3	133974658	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	133974658	133974660	1	45	638.936	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	8	5	10	23	24	23	24	5	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762504969	3	151761367	GA	G	420	PASS	-	-	-	-	-	Del	-	D	151761367	151761371	1	18	376.927	-	-	3	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	2	5	2	31	26	31	26	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762505628	3	153803689	TG	T	1343	PASS	-	-	-	-	-	Del	-	D	153803689	153803691	1	196	1400.01	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	13	13	14	13	35	30	35	30	14	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762505754	3	154107320	CA	C	540	PASS	GPR149	CCDS43162.1	r.?	-	-	Del	intronic	D	154107320	154107322	1	30	484.62	-	-	1	1	1	GPR149|CCDS43162.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR149|CCDS43162.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	4	7	6	31	30	31	30	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762506658	3	157743935	T	TCTTG	327	PASS	-	-	-	-	-	Ins	-	I	157743935	157743943	4	18	358.263	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	5	3	5	31	27	31	27	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762507069	3	158901698	AT	A	269	PASS	IQCJ	CCDS46947.1	r.?	-	-	Del	intronic	D	158901698	158901702	1	10	266.825	-	-	3	1	1	IQCJ|CCDS46947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCJ|CCDS46947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	1	4	2	4	24	30	24	30	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762507385	3	160141474	T	TC	509	PASS	SMC4	CCDS3189.1	r.?	-	-	Ins	intronic	I	160141474	160141481	1	30	479.202	-	-	6	1	1	SMC4|CCDS3189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMC4|CCDS3189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	13	0	0	./.	5	4	7	6	23	20	23	21	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762511677	3	173908792	CGT	C	360	PASS	NLGN1	CCDS3222.1	r.?	-	-	Del	intronic	D	173908792	173908808	2	15	321.876	-	-	7	1	-	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	2	4	34	33	34	33	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762515240	3	185031668	C	CT	600	PASS	MAP3K13	CCDS3270.1	r.?	-	-	Ins	intronic	I	185031668	185031671	1	32	532.446	-	-	2	1	1	MAP3K13|CCDS3270.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MAP3K13|CCDS3270.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	3	9	4	49	30	49	30	9	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762515300	3	185127131	GGGCTACAGA	G	290	PASS	MAP3K13	CCDS3270.1	r.?	-	-	Del	intronic	D	185127131	185127142	9	32	538.467	-	-	1	1	1	MAP3K13|CCDS3270.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP3K13|CCDS3270.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	7	3	8	4	34	19	34	19	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762517413	3	191216164	AT	A	300	PASS	-	-	-	-	-	Del	-	D	191216164	191216168	1	10	269.234	-	-	3	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	1	6	3	31	20	31	20	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762517992	3	193268527	GT	G	358	PASS	ATP13A4	CCDS3304.2	r.?	-	-	Del	intronic	D	193268527	193268535	1	18	376.927	-	-	7	1	1	ATP13A4|CCDS3304.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP13A4|CCDS3304.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	2	5	4	7	39	20	39	20	4	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762520638	4	2161161	GA	G	660	PASS	POLN	CCDS3360.1	r.?	-	-	Del	intronic	D	2161161	2161165	1	42	592.713	-	-	3	1	1	POLN|CCDS3360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLN|CCDS3360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	5	10	6	35	21	35	21	10	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762521142	4	3599842	CT	C	660	PASS	-	-	-	-	-	Del	-	D	3599842	3599844	1	36	591.509	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	3	8	3	9	59	71	59	71	3	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762521177	4	3611083	CCACACGCCACAGG	C	261	PASS	-	-	-	-	-	Del	-	D	3611083	3611101	13	30	484.947	-	-	1	1	-	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	5	0	0	67	48	67	48	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762525794	4	18963870	GA	G	480	PASS	-	-	-	-	-	Del	-	D	18963870	18963876	1	24	431.064	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	3	7	16	21	16	21	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762526181	4	20544484	TGC	T	300	PASS	SLIT2	ENST00000504154	r.?	-	-	Del	intronic	D	20544484	20544489	2	10	267.609	-	-	2	1	-	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	7	11	0	0	./.	4	1	8	3	13	17	13	17	8	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762527411	4	24870361	C	CT	600	PASS	CCDC149	ENST00000504487	r.?	-	-	Ins	intronic	I	24870361	24870368	1	35	528.595	-	-	6	1	1	CCDC149|ENST00000504487|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC149|ENST00000504487|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	6	4	10	9	40	30	41	31	10	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762527838	4	25990379	AT	A	600	PASS	ENSG00000223895	ENST00000442025	r.?	-	-	Del	intronic	D	25990379	25990381	1	32	535.218	-	-	1	1	1	ENSG00000223895|ENST00000442025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000223895|ENST00000442025|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	7	5	11	21	26	21	26	5	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762528977	4	29799612	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	29799612	29799618	1	12	266.405	-	-	5	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	3	2	4	4	23	27	23	28	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762529031	4	30006445	GA	G	300	PASS	ENSG00000237496	ENST00000424014	r.?	-	-	Del	upstream	D	30006445	30006451	1	10	269.415	-	-	5	1	1	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	16	15	16	0	0	./.	4	1	5	4	22	25	22	25	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762530359	4	35474271	AACAT	A	420	PASS	-	-	-	-	-	Del	-	D	35474271	35474277	4	20	377.181	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	3	6	6	23	17	23	17	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762531103	4	37910499	T	TG	600	PASS	TBC1D1	CCDS33972.1	r.?	-	-	Ins	intronic	I	37910499	37910500	1	36	532.81	-	-	0	1	1	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	11	8	0	0	./.	5	5	6	5	18	32	19	34	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762531261	4	38298193	AC	A	420	PASS	-	-	-	-	-	Del	-	D	38298193	38298197	1	20	377.181	-	-	3	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	3	8	6	21	28	21	28	8	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762534430	4	48004853	GCAC	G	600	PASS	CNGA1	CCDS43226.1	r.?	-	-	Del	intronic	D	48004853	48004858	3	32	538.83	-	-	1	1	1	CNGA1|CCDS43226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CNGA1|CCDS43226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	7	3	8	17	28	17	28	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762534504	4	48221650	TTC	T	294	PASS	TEC	CCDS3481.1	r.?	-	-	Del	intronic	D	48221650	48221666	2	12	265.201	-	-	7	1	1	TEC|CCDS3481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEC|CCDS3481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	2	31	23	31	23	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762535833	4	52758300	AGCCACCTC	A	377	PASS	DCUN1D4	CCDS33982.1	r.?	-	-	Del	intronic	D	52758300	52758309	8	56	700.479	-	-	1	1	1	DCUN1D4|CCDS33982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCUN1D4|CCDS33982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	7	6	9	7	19	17	19	17	9	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762536295	4	54674203	AT	A	360	PASS	AC110792.1	ENST00000511394	r.?	-	-	Del	intronic	D	54674203	54674210	1	12	323.298	-	-	6	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	1	5	3	6	18	28	18	28	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762537403	4	57936043	G	GT	449	PASS	IGFBP7	CCDS3512.1	r.?	-	-	Ins	intronic	I	57936043	57936047	1	21	426.248	-	-	3	1	1	IGFBP7|CCDS3512.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGFBP7|CCDS3512.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	6	2	8	3	23	23	23	23	8	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762538507	4	61377737	GA	G	600	PASS	-	-	-	-	-	Del	-	D	61377737	61377739	1	35	538.83	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	4	11	5	24	26	24	26	11	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762540280	4	67166185	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	67166185	67166189	2	15	323.298	-	-	3	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	2	4	2	5	9	16	9	16	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762540339	4	67459196	TA	T	360	PASS	-	-	-	-	-	Del	-	D	67459196	67459199	1	16	323.298	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	4	4	19	12	19	12	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762540509	4	68064640	TG	T	360	PASS	-	-	-	-	-	Del	-	D	68064640	68064642	1	12	323.298	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	5	1	6	1	19	18	19	18	6	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762542018	4	72767378	TTTCC	T	389	PASS	-	-	-	-	-	Del	-	D	72767378	72767385	4	20	377.181	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	4	3	5	17	21	17	21	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762542321	4	73826957	CT	C	480	PASS	-	-	-	-	-	Del	-	D	73826957	73826959	1	21	429.86	-	-	1	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	6	4	10	21	23	21	23	4	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762543419	4	77882839	C	CA	900	PASS	SEPT11	CCDS34018.1	r.?	-	-	Ins	intronic	I	77882839	77882843	1	72	795	-	-	3	1	1	SEPT11|CCDS34018.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEPT11|CCDS34018.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	7	8	13	11	34	29	34	29	13	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762544891	4	83225302	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	83225302	83225312	1	6	265.803	-	-	9	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	0	5	0	6	11	22	11	23	0	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762545425	4	84476204	GC	G	313	PASS	AGPAT9	CCDS3606.1	r.?	-	-	Del	intronic	D	84476204	84476207	1	20	375.375	-	-	2	1	1	AGPAT9|CCDS3606.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGPAT9|CCDS3606.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	3	7	16	24	16	24	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762545605	4	85186727	AT	A	540	PASS	-	-	-	-	-	Del	-	D	85186727	85186734	1	24	483.743	-	-	6	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	2	7	3	11	14	30	14	30	3	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762545808	4	86182882	GCTA	G	420	PASS	-	-	-	-	-	Del	-	D	86182882	86182889	3	18	376.579	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	5	2	6	17	31	17	31	2	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762546092	4	87516684	T	TA	420	PASS	PTPN13	CCDS47093.1	r.?	-	-	Ins	intronic	I	87516684	87516687	1	20	372.967	-	-	2	1	1	PTPN13|CCDS47093.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPN13|CCDS47093.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	4	6	5	22	22	22	22	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762546188	4	87827616	TA	T	629	PASS	C4orf36	CCDS3615.1	r.?	-	-	Del	intronic	D	87827616	87827618	1	42	592.713	-	-	1	1	1	C4orf36|CCDS3615.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C4orf36|CCDS3615.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	6	5	8	6	20	19	20	19	8	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762547949	4	94667796	AAGC	A	358	PASS	GRID2	CCDS3637.1	r.?	-	-	Del	intronic	D	94667796	94667801	3	14	377.181	-	-	1	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	1	6	3	8	20	32	20	32	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762548436	4	96016477	CTG	C	600	PASS	BMPR1B	CCDS3642.1	r.?	-	-	Del	intronic	D	96016477	96016482	2	11	538.83	-	-	2	1	1	BMPR1B|CCDS3642.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BMPR1B|CCDS3642.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	10	0	10	0	25	4	25	4	10	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762554603	4	119486193	C	CCAGT	363	PASS	-	-	-	-	-	Ins	-	I	119486193	119486199	4	18	458.457	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	1	8	2	8	19	39	19	39	2	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762554768	4	120032600	CT	C	660	PASS	-	-	-	-	-	Del	-	D	120032600	120032604	1	42	592.713	-	-	3	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	6	5	9	6	29	16	29	16	9	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762555141	4	121058507	GC	G	660	PASS	-	-	-	-	-	Del	-	D	121058507	121058509	1	30	577.06	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	9	2	10	5	24	45	24	45	10	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762557954	4	130784194	GA	G	360	PASS	-	-	-	-	-	Del	-	D	130784194	130784199	1	12	323.298	-	-	4	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	5	1	7	2	30	29	30	29	7	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762558327	4	132145775	TA	T	420	PASS	-	-	-	-	-	Del	-	D	132145775	132145777	1	20	377.181	-	-	1	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	3	4	4	7	19	20	19	20	4	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762558330	4	132157418	GTGCTGTCC	G	377	PASS	-	-	-	-	-	Del	-	D	132157418	132157428	8	36	700.479	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	11	2	12	4	29	18	29	18	12	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762558622	4	132896819	GGA	G	268	PASS	-	-	-	-	-	Del	-	D	132896819	132896836	2	10	269.415	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	1	4	1	28	30	28	30	4	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762560885	4	140927830	TCATTCAA	T	261	PASS	MAML3	CCDS43266.1	r.?	-	-	Del	intronic	D	140927830	140927839	7	30	484.345	-	-	1	1	1	MAML3|CCDS43266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAML3|CCDS43266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	14	26	14	0	0	./.	5	4	5	5	28	15	28	15	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762563725	4	151657135	AGCAAAGCTTTCAGGG	A	290	PASS	LRBA	CCDS3773.1	r.?	-	-	Del	intronic	D	151657135	151657151	15	32	534.014	-	-	1	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	7	3	7	18	25	18	25	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762564682	4	154825073	A	AGT	300	PASS	-	-	-	-	-	Ins	-	I	154825073	154825089	2	10	263.395	-	-	7	1	-	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	1	4	1	4	32	29	32	30	1	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762564837	4	155304012	AGGC	A	449	PASS	DCHS2	CCDS3785.1	r.?	-	-	Del	intronic	D	155304012	155304016	3	25	431.064	-	-	1	1	1	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	4	8	4	24	20	24	20	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762570510	4	173932314	GA	G	629	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Del	intronic	D	173932314	173932318	1	42	592.111	-	-	3	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	5	6	5	7	20	23	20	23	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762570982	4	175444207	C	CT	778	PASS	HPGD	CCDS3821.1	r.?	-	-	Ins	upstream	I	175444207	175444209	1	15	745.332	-	-	1	1	1	HPGD|CCDS3821.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	HPGD|ENST00000510901|r.9_10insa|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	18	10	18	10	0	0	./.	14	0	17	2	31	11	31	11	17	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762573019	4	181748213	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	181748213	181748222	1	27	530.402	-	-	8	1	1	-	-	./.	0	0	0	0	13	20	13	21	0	0	./.	8	2	9	2	24	16	25	16	9	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762573080	4	181897858	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	181897858	181897865	1	24	479.529	-	-	6	1	1	-	-	./.	0	0	0	0	12	17	12	18	0	0	./.	7	2	9	3	33	19	33	19	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762573217	4	182273164	TC	T	360	PASS	-	-	-	-	-	Del	-	D	182273164	182273166	1	7	319.686	-	-	1	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	6	0	10	0	19	29	19	29	10	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762573812	4	184045158	GA	G	300	PASS	WWC2	CCDS34109.2	r.?	-	-	Del	intronic	D	184045158	184045161	1	12	269.415	-	-	2	1	1	WWC2|CCDS34109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWC2|CCDS34109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	4	2	32	9	32	9	4	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762575200	4	187382577	GA	G	540	PASS	MTNR1A	ENST00000509111	r.?	-	-	Del	intronic	D	187382577	187382582	1	24	484.947	-	-	4	1	1	MTNR1A|ENST00000509111|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTNR1A|ENST00000509111|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	7	4	9	15	21	15	21	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762575241	4	187507964	GT	G	360	PASS	FAT1	CCDS47177.1	r.?	-	-	Del	downstream	D	187507964	187507967	1	15	323.298	-	-	2	1	1	FAT1|CCDS47177.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAT1|CCDS47177.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	11	17	11	0	0	./.	2	4	3	8	11	20	11	20	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762575630	4	188725915	GCAGT	GC	300	PASS	-	-	-	-	-	Complex	-	DI	188725916	188725919	4	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	2	0	0	23	21	23	21	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762578526	5	2705379	AGTGT	A	298	PASS	-	-	-	-	-	Del	-	D	2705379	2705385	4	15	323.429	-	-	2	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	4	4	6	39	44	39	44	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762578613	5	2962393	CA	C	420	PASS	-	-	-	-	-	Del	-	D	2962393	2962399	1	18	376.732	-	-	5	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	2	6	3	28	23	28	23	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762580711	5	9150564	CTCTA	C	509	PASS	SEMA5A	CCDS3875.1	r.?	-	-	Del	intronic	D	9150564	9150574	4	10	484.542	-	-	2	1	1	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	0	9	2	11	28	39	28	39	2	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762580888	5	9814878	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	9814878	9814888	1	20	373.12	-	-	9	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	3	4	3	5	24	19	24	19	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762583492	5	17261920	TCTTGCCAAAA	T	696	PASS	BASP1	CCDS3888.1	r.?	-	-	Del	intronic	D	17261920	17261931	10	169	1293.12	-	-	1	1	1	BASP1|CCDS3888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BASP1|CCDS3888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	12	12	12	13	29	31	29	32	12	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762585022	5	21671364	AAC	A	329	PASS	-	-	-	-	-	Del	-	D	21671364	21671368	2	16	322.225	-	-	1	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	3	3	4	4	26	16	26	16	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762587210	5	28768971	AT	A	480	PASS	-	-	-	-	-	Del	-	D	28768971	28768973	1	24	431.239	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	3	5	4	22	15	22	15	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762587477	5	29417250	AT	A	480	PASS	-	-	-	-	-	Del	-	D	29417250	29417258	1	21	430.035	-	-	7	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	6	2	8	3	30	18	30	18	8	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762590973	5	39387512	C	CT	960	PASS	DAB2	CCDS34149.1	r.?	-	-	Ins	intronic	I	39387512	39387514	1	65	852.846	-	-	1	1	1	DAB2|CCDS34149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAB2|CCDS34149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	12	14	0	0	./.	4	12	5	16	18	41	19	41	5	16	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762592322	5	43670766	TG	T	523	PASS	NNT	CCDS3949.1	r.?	-	-	Del	intronic	D	43670766	43670768	1	63	754.669	-	-	1	1	1	NNT|CCDS3949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NNT|CCDS3949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	8	9	12	31	34	31	34	9	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762592403	5	44144741	GAGA	G	385	PASS	-	-	-	-	-	Del	-	D	44144741	44144748	3	30	485.144	-	-	2	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	4	6	5	43	32	43	32	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762592613	5	45034424	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	45034424	45034427	1	80	852.846	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	9	7	11	7	25	34	25	34	11	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762593322	5	51262031	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	51262031	51262035	1	30	479.726	-	-	3	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	5	4	5	5	21	25	21	25	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762594996	5	55710683	AG	A	600	PASS	-	-	-	-	-	Del	-	D	55710683	55710689	1	35	539.049	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	4	9	7	30	28	30	28	9	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762598198	5	66419197	TTTAACACAC	T	261	PASS	MAST4	CCDS47225.1	r.?	-	-	Del	intronic	D	66419197	66419209	9	28	485.144	-	-	1	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	3	6	3	7	19	37	19	37	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762598517	5	67652419	A	ACTCT	927	PASS	-	-	-	-	-	Ins	-	I	67652419	67652426	4	90	875.443	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	14	0	0	./.	9	8	10	9	24	31	24	31	10	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762600444	5	75226996	TC	T	660	PASS	-	-	-	-	-	Del	-	D	75226996	75226999	1	42	592.954	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	6	5	8	7	46	36	46	36	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762602362	5	80301365	AT	A	277	PASS	RASGRF2	CCDS4052.1	r.?	-	-	Del	intronic	D	80301365	80301368	1	10	267.718	-	-	2	1	1	RASGRF2|CCDS4052.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASGRF2|CCDS4052.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	1	4	2	7	29	29	29	29	2	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762602631	5	81462773	A	AT	360	PASS	ATG10	CCDS4057.1	r.?	-	-	Ins	intronic	I	81462773	81462781	1	15	319.817	-	-	7	1	1	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG10|CCDS4057.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	18	0	0	./.	4	2	6	4	24	29	25	29	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762602986	5	82498635	TTA	T	480	PASS	XRCC4	CCDS4058.1	r.?	-	-	Del	intronic	D	82498635	82498643	2	24	431.239	-	-	3	1	1	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	5	5	5	31	22	31	22	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762606146	5	94874649	GTTTC	G	567	PASS	TTC37	CCDS4072.1	r.?	-	-	Del	intronic	D	94874649	94874657	4	30	592.954	-	-	1	1	1	TTC37|CCDS4072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC37|CCDS4072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	9	2	9	3	33	11	33	11	9	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762606298	5	95320222	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	95320222	95320225	2	20	377.334	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	8	3	28	26	28	26	8	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762608495	5	103094297	TA	T	360	PASS	-	-	-	-	-	Del	-	D	103094297	103094306	1	15	323.429	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	2	5	3	21	19	21	19	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762608761	5	104006407	G	GC	480	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Ins	intronic	I	104006407	104006409	1	24	426.423	-	-	1	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	14	12	0	0	./.	3	5	3	6	17	23	20	23	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762609634	5	107498813	AT	A	417	PASS	FBXL17	ENST00000359660	r.?	-	-	Del	intronic	D	107498813	107498816	1	18	377.334	-	-	2	1	1	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	5	5	7	25	27	25	27	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762610803	5	111354906	AC	A	480	PASS	-	-	-	-	-	Del	-	D	111354906	111354908	1	16	431.239	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	7	1	9	2	43	31	43	31	9	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762612414	5	116433180	G	GTTAAGAGATCC	324	PASS	-	-	-	-	-	Ins	-	I	116433180	116433191	11	48	565.581	-	-	0	1	1	-	-	./.	0	0	0	0	4	10	4	11	0	0	./.	5	7	5	7	14	22	15	23	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762612727	5	117517204	CT	C	540	PASS	-	-	-	-	-	Del	-	D	117517204	117517206	1	24	485.144	-	-	1	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	2	7	4	12	12	28	12	28	4	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762615779	5	127430705	TTTC	T	387	PASS	SLC12A2	CCDS4144.1	r.?	-	-	Del	intronic	D	127430705	127430709	3	21	431.239	-	-	1	1	1	SLC12A2|CCDS4144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC12A2|CCDS4144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	6	2	6	3	27	26	27	26	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762618536	5	137444684	GCA	G	360	PASS	-	-	-	-	-	Del	-	D	137444684	137444688	2	12	323.429	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	1	7	2	24	16	24	16	7	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762620287	5	142885627	TG	T	360	PASS	-	-	-	-	-	Del	-	D	142885627	142885629	1	15	323.429	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	4	2	5	30	26	30	26	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762620575	5	144155273	TAGAC	T	480	PASS	-	-	-	-	-	Del	-	D	144155273	144155281	4	25	431.239	-	-	1	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	4	7	4	24	17	24	17	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762620710	5	144581854	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	144581854	144581862	1	50	692.937	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	9	9	11	22	27	22	27	9	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762621352	5	146795536	CTA	C	540	PASS	DPYSL3	CCDS43381.1	r.?	-	-	Del	intronic	D	146795536	146795540	2	28	483.94	-	-	1	1	1	DPYSL3|CCDS43381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYSL3|CCDS43381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	6	3	6	4	22	45	22	45	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762623331	5	153515783	CTTG	C	509	PASS	-	-	-	-	-	Del	-	D	153515783	153515787	3	24	485.144	-	-	1	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	2	7	2	8	26	34	26	34	2	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762623413	5	153678475	TC	T	780	PASS	GALNT10	CCDS4325.1	r.?	-	-	Del	intronic	D	153678475	153678478	1	56	700.764	-	-	2	1	1	GALNT10|CCDS4325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT10|CCDS4325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	6	7	8	9	29	24	29	24	8	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762625241	5	159740804	AG	A	420	PASS	CCNJL	CCDS4350.2	r.?	-	-	Del	upstream	D	159740804	159740810	1	20	377.334	-	-	5	1	1	CCNJL|CCDS4350.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CCNJL|ENST00000377503|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	3	4	3	4	20	31	20	31	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762625312	5	159929459	TC	T	435	PASS	-	-	-	-	-	Del	-	D	159929459	159929462	1	21	429.433	-	-	2	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	6	3	7	38	29	38	29	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762627583	5	167419302	GA	G	300	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167419302	167419306	1	10	268.923	-	-	3	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	1	4	3	4	11	18	11	18	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762627723	5	167900222	AC	A	660	PASS	WWC1	CCDS4366.1	r.?	-	-	Del	downstream	D	167900222	167900224	1	42	592.954	-	-	1	1	1	WWC1|CCDS4366.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	WWC1|CCDS4366.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	13	11	13	0	0	./.	6	5	8	5	23	37	23	37	8	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762627807	5	168216220	TCCTTA	T	329	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168216220	168216227	5	15	323.429	-	-	1	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	2	4	3	19	25	19	25	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762629044	5	172170554	AG	A	689	PASS	-	-	-	-	-	Del	-	D	172170554	172170558	1	45	644.451	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	8	4	12	5	48	16	48	16	12	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762629312	5	172742487	AAC	A	960	PASS	STC2	CCDS4388.1	r.4580_4581delGU	c.?	p.?	Del	3'UTR variant	D	172742487	172742493	2	77	862.479	-	-	2	1	1	STC2|CCDS4388.1|r.4580_4581delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	STC2|CCDS4388.1|r.4580_4581delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	6	10	9	14	32	28	32	28	9	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762630234	5	175463162	A	AG	282	PASS	THOC3	ENST00000514861	r.?	-	-	Ins	upstream	I	175463162	175463164	1	20	372.518	-	-	1	1	1	THOC3|ENST00000514861|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	THOC3|ENST00000514861|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	23	14	23	14	0	0	./.	4	3	5	4	68	62	70	62	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762631160	5	177868287	TC	T	600	PASS	COL23A1	CCDS4436.1	r.?	-	-	Del	intronic	D	177868287	177868289	1	35	538.447	-	-	1	1	1	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	6	7	7	29	33	29	33	7	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762631671	5	178978557	ATC	A	292	PASS	RUFY1	CCDS4445.2	r.?	-	-	Del	intronic	D	178978557	178978562	2	12	269.525	-	-	2	1	1	RUFY1|CCDS4445.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUFY1|CCDS4445.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	5	6	24	31	24	31	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762632275	5	180591532	TGGGG	T	449	PASS	-	-	-	-	-	Del	-	D	180591532	180591539	4	21	431.239	-	-	6	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	6	2	7	3	42	29	42	29	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762633446	6	3541612	CTGGAGCA	C	261	PASS	-	-	-	-	-	Del	-	D	3541612	3541621	7	28	485.514	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	3	6	3	25	21	25	21	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762633628	6	3982929	T	TA	600	PASS	ENSG00000145965	ENST00000356722	r.21_22insa	c.?	p.?	Ins	5'UTR variant	I	3982929	3982939	1	35	533.439	-	-	9	1	1	ENSG00000145965|ENST00000356722|r.21_22insa|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	ENSG00000145965|ENST00000356722|r.21_22insa|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	16	9	16	9	0	0	./.	4	6	4	12	15	25	15	26	4	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762635045	6	8011831	AG	A	840	PASS	MUTED	CCDS4506.1	r.?	-	-	Del	downstream	D	8011831	8011833	1	63	755.244	-	-	1	1	1	MUTED|CCDS4506.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MUTED|CCDS4506.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	14	16	14	0	0	./.	6	8	9	17	17	29	17	29	9	17	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762637122	6	14296712	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	14296712	14296720	1	12	254.076	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	2	3	8	3	22	29	23	30	8	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762637995	6	17222713	TGTGGAACTGTGAGTTAATTAAA	T	319	PASS	-	-	-	-	-	Del	-	D	17222713	17222736	22	40	593.406	-	-	1	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	7	4	7	4	36	20	36	20	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762640210	6	23290600	GA	G	540	PASS	-	-	-	-	-	Del	-	D	23290600	23290604	1	30	485.514	-	-	3	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	4	5	4	27	16	27	16	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762641306	6	26232830	AT	A	300	PASS	HIST1H1D	CCDS4597.1	r.?	-	-	Del	downstream	D	26232830	26232834	1	12	269.73	-	-	3	1	1	HIST1H1D|CCDS4597.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HIST1H1D|CCDS4597.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	7	5	21	24	21	24	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762642159	6	29069919	A	ATG	300	PASS	OR2J1	ENST00000377171	r.?	-	-	Ins	downstream	I	29069919	29069930	2	12	262.505	-	-	5	1	1	OR2J1|ENST00000377171|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	OR2J1|ENST00000377171|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	4	23	27	23	27	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762643556	6	32255601	AC	A	360	PASS	C6orf10	CCDS34422.1	r.?	-	-	Del	downstream	D	32255601	32255604	1	16	323.676	-	-	2	1	1	C6orf10|CCDS34422.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C6orf10|CCDS34422.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	7	3	21	21	21	21	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762645016	6	34543212	CA	C	480	PASS	-	-	-	-	-	Del	-	D	34543212	34543214	1	21	431.568	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	2	6	6	29	32	29	32	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762645714	6	36428923	AT	A	300	PASS	KCTD20	CCDS4821.1	r.?	-	-	Del	intronic	D	36428923	36428926	1	6	269.73	-	-	2	1	1	KCTD20|CCDS4821.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KCTD20|CCDS4821.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	0	5	1	19	13	19	13	5	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762646192	6	37551485	TC	T	300	PASS	-	-	-	-	-	Del	-	D	37551485	37551490	1	12	269.73	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	4	3	23	30	23	30	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762647822	6	42942918	GACCTGA	G	377	PASS	PEX6	CCDS4877.1	r.?	-	-	Del	intronic	D	42942918	42942926	6	54	700.094	-	-	1	1	1	PEX6|CCDS4877.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEX6|CCDS4877.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	8	5	10	7	23	35	23	35	10	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762648593	6	45483001	GT	G	509	PASS	RUNX2	CCDS43467.1	r.?	-	-	Del	intronic	D	45483001	45483007	1	24	485.514	-	-	5	1	1	RUNX2|CCDS43467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUNX2|CCDS43467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	2	7	2	10	14	31	14	31	2	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762648763	6	46243012	AT	A	329	PASS	RCAN2	CCDS43469.1	r.?	-	-	Del	intronic	D	46243012	46243014	1	12	323.676	-	-	1	1	1	RCAN2|CCDS43469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RCAN2|CCDS43469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	1	5	3	6	20	19	20	19	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762657480	6	76313851	AT	A	360	PASS	SENP6	CCDS47454.1	r.?	-	-	Del	intronic	D	76313851	76313854	1	16	323.676	-	-	2	1	1	SENP6|CCDS47454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SENP6|CCDS47454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	6	5	15	31	15	31	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762657926	6	77960073	A	AG	480	PASS	-	-	-	-	-	Ins	-	I	77960073	77960074	1	24	426.752	-	-	0	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	5	4	6	23	20	23	20	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762657977	6	78146068	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	78146068	78146071	1	8	371.601	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	0	7	1	9	12	19	12	19	1	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762660570	6	87496822	CAGTAA	CATT	509	PASS	-	-	-	-	-	Complex	-	DI	87496823	87496827	5	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	3	0	0	24	15	24	15	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762661183	6	89825580	TC	T	420	PASS	SFRS13B	CCDS47459.1	r.?	-	-	Del	intronic	D	89825580	89825583	1	18	377.02	-	-	2	1	1	SFRS13B|CCDS47459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS13B|CCDS47459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	5	2	7	3	31	12	31	12	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762661809	6	92108745	AG	A	360	PASS	-	-	-	-	-	Del	-	D	92108745	92108747	1	12	323.676	-	-	1	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	1	5	4	7	28	18	28	18	4	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762663247	6	97491710	CATCTGT	C	261	PASS	KLHL32	CCDS5038.1	r.?	-	-	Del	intronic	D	97491710	97491719	6	30	485.514	-	-	1	1	1	KLHL32|CCDS5038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL32|CCDS5038.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	5	6	6	24	22	24	22	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762666372	6	109053691	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	109053691	109053700	1	7	318.257	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	0	6	1	5	19	25	19	26	1	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762668271	6	115194908	GTTA	G	478	PASS	-	-	-	-	-	Del	-	D	115194908	115194912	3	28	485.514	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	3	7	4	16	17	16	17	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762669737	6	120625726	GAATC	G	269	PASS	-	-	-	-	-	Del	-	D	120625726	120625733	4	12	269.73	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	3	5	30	23	30	23	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762671309	6	126330170	AG	A	360	PASS	TRMT11	CCDS35496.1	r.?	-	-	Del	intronic	D	126330170	126330174	1	15	323.676	-	-	3	1	1	TRMT11|CCDS35496.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRMT11|CCDS35496.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	4	2	5	3	14	15	14	15	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762672487	6	130973342	TA	T	300	PASS	-	-	-	-	-	Del	-	D	130973342	130973345	1	10	269.128	-	-	2	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	6	2	23	23	23	23	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762673211	6	133558923	CT	C	360	PASS	EYA4	CCDS5166.1	r.?	-	-	Del	upstream	D	133558923	133558927	1	15	323.676	-	-	3	1	1	EYA4|CCDS5166.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EYA4|CCDS5166.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	12	11	12	0	0	./.	2	4	2	6	14	21	14	21	2	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762674478	6	138334645	AG	A	600	PASS	-	-	-	-	-	Del	-	D	138334645	138334647	1	35	537.052	-	-	1	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	6	4	13	4	35	25	35	25	13	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762674743	6	139349298	TATATTAAA	T	261	PASS	C6orf115	CCDS43509.1	r.?	-	-	Del	upstream	D	139349298	139349310	8	30	485.514	-	-	1	1	1	C6orf115|CCDS43509.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C6orf115|CCDS43509.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	10	13	10	0	0	./.	4	5	6	7	24	25	24	25	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762674747	6	139366440	GA	G	360	PASS	C6orf115	CCDS43509.1	r.?	-	-	Del	downstream	D	139366440	139366442	1	15	323.676	-	-	1	1	1	C6orf115|CCDS43509.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C6orf115|CCDS43509.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	16	18	16	0	0	./.	4	2	8	4	29	26	29	26	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762677646	6	150929079	AT	A	600	PASS	PLEKHG1	CCDS34552.1	r.?	-	-	Del	intronic	D	150929079	150929089	1	35	538.858	-	-	9	1	1	PLEKHG1|CCDS34552.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLEKHG1|CCDS34552.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	4	6	9	8	31	26	31	26	9	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762678075	6	152165227	CT	C	300	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152165227	152165231	1	12	269.73	-	-	3	1	-	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	2	4	2	9	2	9	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762680280	6	159291842	T	TC	300	PASS	C6orf99	ENST00000367073	r.?	-	-	Ins	intronic	I	159291842	159291844	1	12	266.72	-	-	1	1	1	C6orf99|ENST00000367073|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf99|ENST00000367073|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	5	5	16	28	16	28	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762684659	7	2293869	G	GC	1169	PASS	SNX8	CCDS5331.1	r.?	-	-	Ins	downstream	I	2293869	2293877	1	117	1060.57	-	-	7	1	1	SNX8|CCDS5331.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SNX8|CCDS5331.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	7	13	7	0	0	./.	8	12	10	12	30	42	30	42	10	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762684840	7	2692051	GC	G	720	PASS	TTYH3	CCDS34588.1	r.?	-	-	Del	intronic	D	2692051	2692054	1	49	645.012	-	-	2	1	1	TTYH3|CCDS34588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTYH3|CCDS34588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	6	6	9	9	40	48	40	48	9	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762685584	7	4643070	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	4643070	4643090	2	12	267.701	-	-	9	1	-	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	5	2	54	38	54	38	5	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762687127	7	7770356	G	GA	720	PASS	ENSG00000219545	ENST00000433511	r.?	-	-	Ins	intronic	I	7770356	7770365	1	45	639.593	-	-	8	1	1	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	8	4	9	13	25	37	26	37	9	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762687255	7	8131473	TTTGGAGTAGGTCTAAGACAA	T	365	PASS	GLCCI1	CCDS34601.1	r.?	-	-	Del	downstream	D	8131473	8131494	20	56	698.311	-	-	1	1	1	GLCCI1|CCDS34601.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GLCCI1|CCDS34601.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	13	7	13	0	0	./.	7	6	7	4	26	38	26	40	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762691398	7	21174533	AT	A	420	PASS	-	-	-	-	-	Del	-	D	21174533	21174539	1	20	376.106	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	3	5	3	25	31	25	31	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762691408	7	21211055	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	21211055	21211057	1	49	639.593	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	6	6	10	6	38	27	38	27	10	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762691443	7	21312290	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	21312290	21312292	1	30	479.695	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	14	8	0	0	./.	4	5	6	8	32	32	33	32	6	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762691794	7	22255049	T	TC	540	PASS	RAPGEF5	ENST00000344041	r.?	-	-	Ins	intronic	I	22255049	22255052	1	30	479.093	-	-	2	1	1	RAPGEF5|ENST00000344041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAPGEF5|ENST00000344041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	10	16	0	0	./.	4	5	5	6	28	23	28	23	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762691887	7	22541865	T	TG	507	PASS	ENSG00000105889	ENST00000404369	r.?	-	-	Ins	upstream	I	22541865	22541874	1	35	532.392	-	-	8	1	1	ENSG00000105889|ENST00000404369|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000105889|ENST00000441815|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	6	4	8	4	42	22	42	23	8	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762693304	7	26842931	CT	C	660	PASS	SKAP2	CCDS5400.1	r.?	-	-	Del	intronic	D	26842931	26842935	1	40	592.916	-	-	3	1	1	SKAP2|CCDS5400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SKAP2|CCDS5400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	4	7	9	10	35	34	35	34	9	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762694955	7	32064902	GT	G	660	PASS	PDE1C	CCDS5437.1	r.?	-	-	Del	intronic	D	32064902	32064904	1	40	592.916	-	-	1	1	1	PDE1C|CCDS5437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1C|CCDS5437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	7	4	8	4	49	26	49	26	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762695076	7	32466495	CA	C	300	PASS	-	-	-	-	-	Del	-	D	32466495	32466498	1	12	267.701	-	-	2	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	2	4	26	25	26	25	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762696001	7	35094136	GA	G	263	PASS	-	-	-	-	-	Del	-	D	35094136	35094141	1	12	269.507	-	-	4	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	5	3	22	29	22	29	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762698745	7	43236808	GA	G	960	PASS	HECW1	CCDS5469.2	r.?	-	-	Del	intronic	D	43236808	43236818	1	80	860.016	-	-	9	1	1	HECW1|CCDS5469.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HECW1|CCDS5469.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	9	7	15	8	49	26	49	26	15	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762699973	7	46989002	CT	C	660	PASS	-	-	-	-	-	Del	-	D	46989002	46989005	1	36	592.916	-	-	2	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	8	3	8	3	40	29	40	29	8	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762700061	7	47270043	TA	T	360	PASS	-	-	-	-	-	Del	-	D	47270043	47270051	1	16	323.409	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	3	7	4	27	27	27	27	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762700514	7	48606370	CA	C	300	PASS	ABCA13	CCDS47584.1	r.?	-	-	Del	intronic	D	48606370	48606372	1	12	269.507	-	-	1	1	1	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	2	5	20	27	20	27	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762700566	7	48796233	GA	G	420	PASS	-	-	-	-	-	Del	-	D	48796233	48796240	1	18	377.31	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	2	7	4	38	15	38	15	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762701681	7	52420107	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	52420107	52420110	1	54	692.291	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	8	7	9	28	40	29	40	7	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762701830	7	52801446	GT	G	360	PASS	-	-	-	-	-	Del	-	D	52801446	52801448	1	16	323.409	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	3	7	35	25	35	25	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762702801	7	55587958	A	AAT	420	PASS	VOPP1	CCDS47588.1	r.?	-	-	Ins	intronic	I	55587958	55587967	2	18	368.882	-	-	4	1	1	VOPP1|CCDS47588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VOPP1|CCDS47588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	5	3	5	34	28	34	28	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762702895	7	55883921	GATAGT	G	325	PASS	SEPT14	CCDS5519.2	r.?	-	-	Del	intronic	D	55883921	55883927	5	24	431.212	-	-	1	1	1	SEPT14|CCDS5519.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPT14|CCDS5519.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	26	12	26	0	0	./.	3	5	6	6	25	28	25	28	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762706675	7	66486074	TGTTACTCTTTA	T	349	PASS	TYW1	CCDS5538.1	r.?	-	-	Del	intronic	D	66486074	66486089	11	56	700.719	-	-	1	1	1	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	7	6	7	6	46	27	46	27	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762706933	7	66967613	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	66967613	66967630	2	15	323.409	-	-	8	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	2	4	2	4	29	37	29	37	2	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762709808	7	73946257	CT	C	689	PASS	GTF2IRD1	CCDS5571.1	r.?	-	-	Del	intronic	D	73946257	73946259	1	45	645.012	-	-	1	1	1	GTF2IRD1|CCDS5571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTF2IRD1|CCDS5571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	4	8	4	12	31	40	31	40	4	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762711447	7	78789405	TA	T	300	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	78789405	78789408	1	10	269.507	-	-	2	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	1	7	2	21	27	21	27	7	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762712162	7	81109911	CT	C	357	PASS	-	-	-	-	-	Del	-	D	81109911	81109915	1	16	323.409	-	-	3	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	3	5	6	29	28	29	28	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762712874	7	83321861	TA	T	300	PASS	-	-	-	-	-	Del	-	D	83321861	83321864	1	12	269.507	-	-	2	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	4	24	11	24	11	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762713760	7	86742115	A	AAT	360	PASS	ENSG00000233957	ENST00000434831	r.?	-	-	Ins	intronic	I	86742115	86742128	2	7	316.184	-	-	6	1	1	ENSG00000233957|ENST00000434831|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000233957|ENST00000434831|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	6	0	8	1	29	15	29	15	8	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762715577	7	94006018	AT	A	480	PASS	-	-	-	-	-	Del	-	D	94006018	94006025	1	24	431.212	-	-	6	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	3	5	5	26	26	26	26	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762715641	7	94287866	GTGTGAACCC	G	364	PASS	SGCE	CCDS47642.1	r.?	-	-	Del	upstream	D	94287866	94287877	9	48	754.019	-	-	1	1	1	SGCE|CCDS47642.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PEG10|ENST00000482108|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	11	4	11	22	42	22	42	4	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762715865	7	95117683	A	AT	540	PASS	ASB4	CCDS5641.1	r.?	-	-	Ins	intronic	I	95117683	95117691	1	28	467.052	-	-	7	1	1	ASB4|CCDS5641.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASB4|CCDS5641.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	23	18	24	0	0	./.	6	3	15	7	33	28	33	28	15	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762717153	7	98962231	GAA	G	600	PASS	ARPC1A	CCDS5660.1	r.?	-	-	Del	intronic	D	98962231	98962234	2	36	537.209	-	-	2	1	1	ARPC1A|CCDS5660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARPC1A|CCDS5660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	5	5	10	7	24	22	24	22	10	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762719187	7	104252444	C	CT	360	PASS	LHFPL3	ENST00000424859	r.?	-	-	Ins	intronic	I	104252444	104252453	1	12	319.797	-	-	8	1	1	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	7	8	7	0	0	./.	1	5	3	7	22	29	23	29	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762720250	7	107535777	CAAATCTTATTATG	C	261	PASS	DLD	CCDS5749.1	r.?	-	-	Del	intronic	D	107535777	107535792	13	30	485.113	-	-	1	1	1	DLD|CCDS5749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLD|CCDS5749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	5	4	5	23	27	23	27	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762720476	7	108362129	CTGTCTGTGTCACTGCTGTCATGGCA	C	377	PASS	-	-	-	-	-	Del	-	D	108362129	108362158	25	56	700.117	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	7	4	7	23	26	25	26	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762721107	7	110630534	GT	G	360	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Del	intronic	D	110630534	110630537	1	15	321.603	-	-	2	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	5	3	20	14	20	14	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762723281	7	120075786	GAT	G	300	PASS	KCND2	CCDS5776.1	r.?	-	-	Del	intronic	D	120075786	120075804	2	6	269.507	-	-	8	1	1	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	0	6	0	34	22	34	22	6	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762724543	7	124439927	CT	C	360	PASS	-	-	-	-	-	Del	-	D	124439927	124439929	1	16	317.388	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	4	4	19	25	19	25	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762726041	7	129017558	CA	C	540	PASS	AHCYL2	CCDS5812.1	r.?	-	-	Del	intronic	D	129017558	129017565	1	18	484.511	-	-	6	1	1	AHCYL2|CCDS5812.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHCYL2|CCDS5812.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	1	8	3	11	8	36	8	36	3	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762729133	7	137655019	AC	A	389	PASS	CREB3L2	CCDS34760.1	r.?	-	-	Del	intronic	D	137655019	137655021	1	14	374.3	-	-	1	1	1	CREB3L2|CCDS34760.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB3L2|CCDS34760.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	1	7	2	23	21	23	21	7	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762729178	7	137778522	TC	T	660	PASS	AKR1D1	CCDS5846.1	r.?	-	-	Del	intronic	D	137778522	137778524	1	42	592.916	-	-	1	1	1	AKR1D1|CCDS5846.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKR1D1|CCDS5846.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	6	5	7	5	31	23	31	23	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762729851	7	139581249	CT	C	300	PASS	TBXAS1	CCDS5855.1	r.?	-	-	Del	intronic	D	139581249	139581255	1	10	267.701	-	-	5	1	1	TBXAS1|CCDS5855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBXAS1|CCDS5855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	5	0	22	17	22	17	5	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762729910	7	139801081	TAGG	T	360	PASS	JHDM1D	CCDS43658.1	r.?	-	-	Del	intronic	D	139801081	139801085	3	15	323.409	-	-	1	1	1	JHDM1D|CCDS43658.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JHDM1D|CCDS43658.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	4	2	4	2	36	24	36	24	4	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762734314	7	152754488	C	CT	1109	PASS	-	-	-	-	-	Ins	-	I	152754488	152754495	1	108	1008.47	-	-	6	1	1	-	-	./.	0	0	0	0	9	13	9	14	0	0	./.	8	11	10	12	41	29	41	29	10	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762735325	7	155653348	CT	C	780	PASS	-	-	-	-	-	Del	-	D	155653348	155653350	1	54	700.719	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	5	8	5	11	33	40	33	40	5	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762735599	7	156484721	AG	A	300	PASS	LMBR1	CCDS5945.1	r.?	-	-	Del	intronic	D	156484721	156484724	1	10	267.099	-	-	2	1	1	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	1	4	4	22	32	22	32	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762737898	8	4464875	TGATTCTGA	T	319	PASS	-	-	-	-	-	Del	-	D	4464875	4464886	8	22	593.6	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	10	1	11	1	32	9	32	9	11	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762738570	8	6604684	TG	T	960	PASS	AGPAT5	CCDS34796.1	r.?	-	-	Del	intronic	D	6604684	6604686	1	80	863.09	-	-	1	1	1	AGPAT5|CCDS34796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGPAT5|CCDS34796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	9	7	11	9	23	21	23	21	11	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762739660	8	11173862	CCTAGA	C	327	PASS	MTMR9	CCDS5979.1	r.?	-	-	Del	intronic	D	11173862	11173868	5	18	378.129	-	-	1	1	1	MTMR9|CCDS5979.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AF131216.1|ENST00000498997|r.5357_5361delUCUAG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	14	2	14	2	0	0	./.	5	2	6	3	14	13	14	13	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762739670	8	11193726	GT	G	840	PASS	AMAC1L2	CCDS5980.1	r.?	-	-	Del	downstream	D	11193726	11193728	1	63	756.258	-	-	1	1	1	AMAC1L2|CCDS5980.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TDH|ENST00000326605|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	9	6	9	0	0	./.	8	6	9	7	22	19	22	19	9	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762740466	8	13691962	CTA	C	540	PASS	-	-	-	-	-	Del	-	D	13691962	13691967	2	18	480.747	-	-	2	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	8	1	8	1	17	10	17	10	8	1	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762740850	8	14726160	AATT	A	360	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14726160	14726165	3	16	324.111	-	-	1	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	3	3	16	19	16	19	3	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762744587	8	28347201	G	GGCAA	447	PASS	FZD3	CCDS6069.1	r.?	-	-	Ins	upstream	I	28347201	28347207	4	30	448.838	-	-	1	1	1	FZD3|CCDS6069.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FBXO16|CCDS6068.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	4	9	5	12	19	12	19	9	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762745686	8	32136480	CTG	C	780	PASS	NRG1	CCDS47836.1	r.?	-	-	Del	intronic	D	32136480	32136486	2	54	702.239	-	-	2	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	8	6	11	14	26	14	26	6	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762745899	8	32824084	GA	G	480	PASS	-	-	-	-	-	Del	-	D	32824084	32824088	1	24	432.147	-	-	3	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	5	5	6	13	20	13	20	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762746318	8	34813227	TA	T	300	PASS	-	-	-	-	-	Del	-	D	34813227	34813231	1	12	270.092	-	-	3	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	3	3	16	11	16	11	3	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762746516	8	35953227	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	35953227	35953232	1	12	318.09	-	-	4	1	-	-	-	./.	0	0	0	0	2	8	2	8	0	0	./.	1	5	0	1	6	26	7	26	1	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762747165	8	39337438	TG	T	600	PASS	-	-	-	-	-	Del	-	D	39337438	39337442	1	27	539.582	-	-	3	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	8	2	12	9	22	9	22	2	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762749883	8	52156493	TAGA	T	480	PASS	-	-	-	-	-	Del	-	D	52156493	52156497	3	21	432.147	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	6	2	9	4	32	26	32	26	9	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762750397	8	53816355	TG	T	540	PASS	-	-	-	-	-	Del	-	D	53816355	53816357	1	28	486.166	-	-	1	1	-	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	6	5	6	19	36	19	36	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762751283	8	56826658	GGT	G	360	PASS	-	-	-	-	-	Del	-	D	56826658	56826676	2	15	318.692	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	2	5	39	52	39	52	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762751436	8	57262454	TTTG	TC	418	PASS	-	-	-	-	-	Complex	-	DI	57262455	57262457	3	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	5	0	0	18	51	18	51	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762753225	8	64269472	GA	G	623	PASS	-	-	-	-	-	Del	-	D	64269472	64269475	1	36	594.203	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	8	3	13	4	38	31	38	31	13	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762754531	8	69433920	AT	A	540	PASS	C8orf34	CCDS6203.1	r.?	-	-	Del	intronic	D	69433920	69433923	1	28	484.962	-	-	2	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	3	7	29	33	29	33	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762754593	8	69737289	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	69737289	69737297	1	66	801.245	-	-	7	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	10	5	12	8	31	30	31	31	12	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762754763	8	70362236	TG	T	600	PASS	-	-	-	-	-	Del	-	D	70362236	70362238	1	32	539.582	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	3	10	4	35	40	35	40	10	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762755470	8	72502536	TTC	T	780	PASS	-	-	-	-	-	Del	-	D	72502536	72502539	2	54	702.239	-	-	1	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	5	8	7	11	24	26	24	26	7	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762755827	8	73571590	ATAGAT	A	389	PASS	KCNB2	CCDS6209.1	r.?	-	-	Del	intronic	D	73571590	73571596	5	14	378.129	-	-	1	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	1	6	1	6	34	33	34	33	1	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762758990	8	84195920	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	84195920	84195925	1	15	320.498	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	9	11	0	0	./.	4	2	6	3	23	26	23	26	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762762989	8	97955968	TGTA	T	420	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Del	intronic	D	97955968	97955973	3	20	378.129	-	-	1	1	1	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	3	4	3	16	31	16	31	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762763071	8	98379478	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	98379478	98379488	1	12	256.847	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	10	16	0	0	./.	2	3	2	4	25	25	26	25	2	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762765291	8	106134458	AT	A	360	PASS	-	-	-	-	-	Del	-	D	106134458	106134467	1	15	324.111	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	2	5	3	36	22	36	22	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762765306	8	106185039	GTTTAT	G	834	PASS	-	-	-	-	-	Del	-	D	106185039	106185045	5	88	917.711	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	10	8	11	23	29	24	29	9	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762765431	8	106571495	GTACTTAGGC	G	290	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Del	intronic	D	106571495	106571505	9	35	540.184	-	-	1	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	4	6	4	26	27	26	27	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762766437	8	109980198	CCTGA	C	358	PASS	-	-	-	-	-	Del	-	D	109980198	109980204	4	20	378.129	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	7	3	36	24	36	24	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762768250	8	116714329	CTCTT	C	449	PASS	TRPS1	ENST00000422939	r.?	-	-	Del	intronic	D	116714329	116714335	4	16	430.943	-	-	1	1	1	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	7	1	10	2	33	34	33	34	10	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762768458	8	117463992	CCTTATGAAACCATCAGAT	C	435	PASS	-	-	-	-	-	Del	-	D	117463992	117464014	18	72	810.276	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	7	8	6	8	26	23	27	23	7	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762768987	8	119314565	TTCATTTA	T	377	PASS	SAMD12	CCDS47913.1	r.?	-	-	Del	intronic	D	119314565	119314574	7	50	702.239	-	-	1	1	1	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	9	4	12	5	38	26	38	26	12	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762769215	8	120034857	CT	C	900	PASS	-	-	-	-	-	Del	-	D	120034857	120034863	1	66	810.276	-	-	5	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	10	5	12	6	43	22	43	22	12	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762772170	8	129586097	TG	T	600	PASS	-	-	-	-	-	Del	-	D	129586097	129586101	1	27	540.184	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	8	2	8	29	34	29	34	2	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762772494	8	130782281	ACT	A	660	PASS	GSDMC	CCDS6360.1	r.?	-	-	Del	intronic	D	130782281	130782286	2	40	594.203	-	-	2	1	1	GSDMC|CCDS6360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GSDMC|CCDS6360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	4	7	6	11	13	30	13	30	6	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762772528	8	130870772	AG	A	360	PASS	FAM49B	CCDS6361.1	r.?	-	-	Del	intronic	D	130870772	130870774	1	16	324.111	-	-	1	1	1	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	4	3	32	25	32	25	4	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762773637	8	134604743	ATACC	A	449	PASS	-	-	-	-	-	Del	-	D	134604743	134604751	4	25	432.147	-	-	1	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	4	5	6	49	42	49	42	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762774107	8	136324047	CA	C	1020	PASS	-	-	-	-	-	Del	-	D	136324047	136324049	1	84	918.313	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	6	11	6	13	34	41	34	41	6	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762775255	8	139907883	GA	G	960	PASS	COL22A1	CCDS6376.1	r.?	-	-	Del	intronic	D	139907883	139907892	1	72	864.295	-	-	8	1	1	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	11	6	13	30	51	30	51	6	13	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762776864	8	144789776	CCCCCGGCCCGG	C	261	PASS	-	-	-	-	-	Del	-	D	144789776	144789790	11	24	471.114	-	-	1	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	2	16	6	39	24	39	24	16	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762779044	9	8231767	GC	G	480	PASS	-	-	-	-	-	Del	-	D	8231767	8231771	1	21	433.346	-	-	3	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	2	6	2	7	17	17	17	17	2	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762780019	9	12095460	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	12095460	12095469	1	16	321.397	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	3	4	4	14	17	14	17	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762780505	9	13892579	TGTG	TC	389	PASS	-	-	-	-	-	Complex	-	DI	13892580	13892582	3	20	0	-	-	0	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	4	0	0	15	17	15	17	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762782326	9	19793599	CTT	C	600	PASS	-	-	-	-	-	Del	-	D	19793599	19793604	2	36	541.08	-	-	4	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	5	6	7	18	20	18	20	6	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762785092	9	32174756	CATGTTTTGCTATT	C	290	PASS	-	-	-	-	-	Del	-	D	32174756	32174771	13	27	541.682	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	8	2	7	2	21	17	22	17	8	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762786149	9	35376805	CATGATGGAG	C	348	PASS	UNC13B	CCDS6579.1	r.?	-	-	Del	intronic	D	35376805	35376815	9	48	650.019	-	-	1	1	1	UNC13B|CCDS6579.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC13B|CCDS6579.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	5	7	8	7	20	24	20	24	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762792307	9	77622072	TACTTTA	T	261	PASS	C9orf41	CCDS6649.1	r.?	-	-	Del	intronic	D	77622072	77622079	6	30	487.514	-	-	1	1	1	C9orf41|CCDS6649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf41|CCDS6649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	4	7	3	13	15	13	16	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762792834	9	79440485	GTGTT	G	607	PASS	PRUNE2	CCDS47982.1	r.?	-	-	Del	intronic	D	79440485	79440491	4	45	649.417	-	-	1	1	1	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	8	4	10	20	27	20	27	4	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762795879	9	91554403	AGGCC	A	538	PASS	-	-	-	-	-	Del	-	D	91554403	91554408	4	36	541.682	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	5	6	5	15	16	15	16	6	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762798374	9	101876942	G	GAC	660	PASS	TGFBR1	CCDS6738.1	r.?	-	-	Ins	intronic	I	101876942	101876946	2	42	582.605	-	-	1	1	1	TGFBR1|CCDS6738.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TGFBR1|CCDS6738.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	6	5	7	5	22	22	22	22	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762799348	9	105696935	AT	A	480	PASS	-	-	-	-	-	Del	-	D	105696935	105696945	1	21	433.346	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	6	2	8	5	20	17	20	17	8	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762801431	9	113679505	TG	T	420	PASS	LPAR1	CCDS6777.1	r.?	-	-	Del	intronic	D	113679505	113679507	1	20	377.371	-	-	1	1	1	LPAR1|CCDS6777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPAR1|CCDS6777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	3	4	5	6	17	12	17	12	5	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762803861	9	123078316	AT	A	569	PASS	-	-	-	-	-	Del	-	D	123078316	123078318	1	35	541.682	-	-	1	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	6	4	8	7	19	16	19	16	8	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762804497	9	125766257	GC	G	780	PASS	RABGAP1	CCDS6848.2	r.?	-	-	Del	intronic	D	125766257	125766260	1	54	703.585	-	-	2	1	1	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABGAP1|CCDS6848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	8	5	9	6	16	12	16	12	9	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762805072	9	127966974	CTCT	C	389	PASS	RABEPK	CCDS6862.1	r.?	-	-	Del	intronic	D	127966974	127966982	3	20	371.351	-	-	2	1	1	RABEPK|CCDS6862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABEPK|CCDS6862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	4	3	5	16	20	16	20	3	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762805600	9	129787180	C	CT	660	PASS	RALGPS1	CCDS35143.1	r.?	-	-	Ins	intronic	I	129787180	129787189	1	42	585.013	-	-	8	1	1	RALGPS1|CCDS35143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALGPS1|CCDS35143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	5	6	6	6	21	17	21	17	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762806152	9	131646673	C	CTCAT	449	PASS	LRRC8A	CCDS35155.1	r.?	-	-	Ins	intronic	I	131646673	131646701	4	21	408.059	-	-	6	1	-	LRRC8A|CCDS35155.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC8A|CCDS35155.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	6	2	7	3	36	39	37	39	7	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762807995	9	137887276	CGGCCA	C	803	PASS	-	-	-	-	-	Del	-	D	137887276	137887283	5	78	900.39	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	12	5	13	7	34	28	34	28	13	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762809220	X	3706667	AG	A	360	PASS	-	-	-	-	-	Del	-	D	3706667	3706671	1	7	324.487	-	-	3	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	0	7	0	43	17	43	17	7	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762809224	X	3718608	AGTGGC	A	290	PASS	-	-	-	-	-	Del	-	D	3718608	3718617	5	35	540.811	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	4	6	4	9	22	25	22	25	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762809876	X	5804890	GC	G	660	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	downstream	D	5804890	5804894	1	42	594.29	-	-	3	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	11	17	11	0	0	./.	5	6	6	6	29	31	29	31	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762809942	X	5980327	TA	T	600	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	5980327	5980334	1	35	540.811	-	-	6	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	6	4	10	4	43	25	43	25	10	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762810649	X	8750709	GCC	G	569	PASS	-	-	-	-	-	Del	-	D	8750709	8750712	2	36	538.403	-	-	2	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	5	5	5	5	48	30	48	30	5	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762811135	X	10386587	CT	C	654	PASS	-	-	-	-	-	Del	-	D	10386587	10386595	1	42	594.892	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	6	5	13	11	33	30	33	30	13	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762812107	X	14422782	GTGC	G	300	PASS	-	-	-	-	-	Del	-	D	14422782	14422787	3	12	270.406	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	3	4	25	27	25	27	3	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762812360	X	15554189	C	CA	540	PASS	BMX	CCDS14168.1	r.?	-	-	Ins	intronic	I	15554189	15554196	1	24	481.312	-	-	6	1	1	BMX|CCDS14168.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BMX|CCDS14168.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	7	2	14	5	36	26	36	28	14	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762812412	X	15713696	AG	A	960	PASS	INE2	ENST00000498004	r.?	-	-	Del	intronic	D	15713696	15713699	1	80	864.094	-	-	2	1	1	INE2|ENST00000498004|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	INE2|ENST00000498004|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	7	9	7	12	39	44	39	44	7	12	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762814062	X	23090293	AAAC	A	689	PASS	-	-	-	-	-	Del	-	D	23090293	23090308	3	48	648.372	-	-	4	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	7	5	7	8	39	32	39	32	7	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762815098	X	26966964	CTCTTT	C	389	PASS	-	-	-	-	-	Del	-	D	26966964	26966980	5	20	378.568	-	-	3	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	4	3	5	3	29	23	29	23	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762816133	X	30925782	G	GA	720	PASS	TAB3	CCDS14226.1	r.?	-	-	Ins	intronic	I	30925782	30925789	1	48	641.749	-	-	6	1	1	TAB3|CCDS14226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TAB3|CCDS14226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	5	7	7	9	17	25	17	25	7	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762816499	X	32069174	TC	T	600	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32069174	32069178	1	35	540.811	-	-	3	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	6	4	6	16	35	16	35	4	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762817578	X	37784545	CA	C	360	PASS	ENSG00000250349	ENST00000465127	r.?	-	-	Del	intronic	D	37784545	37784547	1	15	323.885	-	-	1	1	1	ENSG00000250349|ENST00000465127|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000250349|ENST00000465127|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	4	2	6	2	37	27	37	27	6	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762818984	X	43667559	AATTAAATT	A	464	PASS	MAOB	CCDS14261.1	r.?	-	-	Del	intronic	D	43667559	43667571	8	77	864.696	-	-	1	1	1	MAOB|CCDS14261.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAOB|CCDS14261.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	10	7	16	25	34	25	34	7	16	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762821800	X	55549812	C	CACACATATATGTATATATATGTATATATATACACATATGTGTGTGT	300	PASS	-	-	-	-	-	Ins	-	I	55549812	55549823	46	12	131.932	-	-	0	1	-	-	-	./.	0	0	0	0	16	11	17	11	0	0	./.	2	3	0	0	25	41	26	41	2	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762822654	X	62773244	A	ACAGATT	261	PASS	-	-	-	-	-	Ins	-	I	62773244	62773255	6	24	454.219	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	7	2	7	27	23	27	23	2	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762823920	X	69790049	AC	A	697	PASS	TEX11	CCDS35323.1	r.?	-	-	Del	intronic	D	69790049	69790053	1	45	648.974	-	-	3	1	1	TEX11|CCDS35323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEX11|CCDS35323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	8	4	9	41	47	41	47	4	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762823962	X	69906141	TGC	T	540	PASS	TEX11	CCDS35323.1	r.?	-	-	Del	intronic	D	69906141	69906144	2	24	484.924	-	-	1	1	1	TEX11|CCDS35323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEX11|CCDS35323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	7	2	7	5	42	21	42	21	7	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762824572	X	72408050	TA	T	390	PASS	-	-	-	-	-	Del	-	D	72408050	72408052	1	27	540.811	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	8	3	8	37	32	37	32	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762824650	X	72874942	TG	T	660	PASS	CHIC1	CCDS35335.2	r.?	-	-	Del	intronic	D	72874942	72874944	1	36	593.086	-	-	1	1	1	CHIC1|CCDS35335.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHIC1|CCDS35335.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	3	8	5	9	23	33	23	33	5	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762825478	X	76967325	C	CA	840	PASS	ATRX	CCDS14434.1	r.?	-	-	Ins	intronic	I	76967325	76967334	1	60	744.493	-	-	8	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	11	18	0	0	./.	5	9	9	14	34	40	34	41	9	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762825714	X	77787139	CA	C	480	PASS	-	-	-	-	-	Del	-	D	77787139	77787141	1	24	432.649	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	3	8	4	32	34	32	34	8	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762825813	X	78280802	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	78280802	78280807	2	20	378.568	-	-	2	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	3	5	3	22	13	22	13	5	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762826024	X	78909727	CTTTTTTTTTTTTTT	C	268	PASS	-	-	-	-	-	Del	-	D	78909727	78909758	14	27	520.341	-	-	2	1	-	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	2	8	4	5	15	36	15	37	4	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762826523	X	80641088	TATTAAATAAAGA	T	365	PASS	-	-	-	-	-	Del	-	D	80641088	80641103	12	54	703.055	-	-	1	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	5	8	5	8	34	21	34	21	5	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762826846	X	82487987	CG	C	960	PASS	-	-	-	-	-	Del	-	D	82487987	82487989	1	80	863.492	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	9	7	11	8	40	40	40	40	11	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762826900	X	82806747	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	82806747	82806756	1	48	639.341	-	-	8	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	5	7	9	10	26	26	26	26	9	11	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762827422	X	84781493	AT	A	360	PASS	-	-	-	-	-	Del	-	D	84781493	84781496	1	12	324.487	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	1	5	3	7	25	47	25	47	3	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762828620	X	89140282	TATTA	T	281	PASS	-	-	-	-	-	Del	-	D	89140282	89140290	4	30	486.73	-	-	1	1	1	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	5	4	5	7	11	12	11	12	5	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762828783	X	89712753	TTATGCCCAGGCA	T	348	PASS	-	-	-	-	-	Del	-	D	89712753	89712766	12	40	648.974	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	9	2	10	37	35	38	35	3	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762828835	X	89909323	AT	A	346	PASS	-	-	-	-	-	Del	-	D	89909323	89909327	1	12	324.487	-	-	3	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	1	5	4	19	24	19	24	5	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762829514	X	92930615	TG	T	420	PASS	FAM133A	CCDS14466.1	r.?	-	-	Del	intronic	D	92930615	92930620	1	20	378.568	-	-	4	1	1	FAM133A|CCDS14466.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM133A|CCDS14466.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	4	4	4	19	18	19	18	4	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762830052	X	95708794	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	95708794	95708814	2	12	268.6	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	3	2	33	26	33	26	3	2	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762831570	X	101755753	CCTGTGCATT	C	261	PASS	-	-	-	-	-	Del	-	D	101755753	101755764	9	24	486.73	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	2	7	2	7	23	42	23	42	2	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762832683	X	107182720	AG	A	480	PASS	-	-	-	-	-	Del	-	D	107182720	107182722	1	25	432.649	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	4	7	6	40	43	40	43	7	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762832699	X	107284093	C	CGTGTGTGTGTGTGT	280	PASS	VSIG1	CCDS14535.1	r.?	-	-	Ins	upstream	I	107284093	107284110	14	9	365.218	-	-	8	1	1	VSIG1|CCDS14535.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	VSIG1|CCDS14535.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	18	14	19	14	0	0	./.	8	0	1	0	35	43	44	43	8	0	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762832995	X	108901901	GC	G	840	PASS	ACSL4	CCDS14548.1	r.?	-	-	Del	intronic	D	108901901	108901905	1	55	757.136	-	-	3	1	1	ACSL4|CCDS14548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACSL4|CCDS14548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	10	7	14	32	52	32	52	7	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762833166	X	109631411	AATG	A	358	PASS	AMMECR1	ENST00000372057	r.?	-	-	Del	intronic	D	109631411	109631416	3	20	378.568	-	-	1	1	1	AMMECR1|ENST00000372057|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AMMECR1|ENST00000372057|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	4	3	7	4	32	22	32	22	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762834603	X	115988792	AAAAAC	A	449	PASS	-	-	-	-	-	Del	-	D	115988792	115988799	5	24	432.649	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	5	6	6	33	34	33	34	6	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762835800	X	120242000	ATGAT	A	658	PASS	-	-	-	-	-	Del	-	D	120242000	120242008	4	45	648.372	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	4	8	6	14	20	25	20	25	6	14	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762836288	X	122173218	GA	G	780	PASS	-	-	-	-	-	Del	-	D	122173218	122173225	1	54	703.055	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	8	5	10	7	29	27	29	27	10	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762837508	X	127341148	GA	G	420	PASS	-	-	-	-	-	Del	-	D	127341148	127341158	1	18	378.568	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	5	3	6	25	15	25	15	3	6	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762838217	X	131596704	ATG	A	300	PASS	MBNL3	ENST00000370844	r.?	-	-	Del	intronic	D	131596704	131596719	2	12	270.406	-	-	7	1	-	MBNL3|ENST00000370844|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MBNL3|ENST00000370844|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	22	29	22	29	2	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762838769	X	134518143	TC	T	720	PASS	-	-	-	-	-	Del	-	D	134518143	134518146	1	48	648.974	-	-	2	1	1	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	5	7	6	9	31	30	31	30	6	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762838845	X	134986526	CCTT	C	389	PASS	SAGE1	CCDS14652.1	r.?	-	-	Del	intronic	D	134986526	134986536	3	18	378.568	-	-	3	1	1	SAGE1|CCDS14652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAGE1|CCDS14652.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	2	5	4	26	28	27	28	6	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762839043	X	135850090	GC	G	869	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Del	intronic	D	135850090	135850092	1	72	810.013	-	-	1	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	8	7	9	9	29	36	29	36	9	9	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762840051	X	140357075	TG	T	389	PASS	-	-	-	-	-	Del	-	D	140357075	140357080	1	18	378.568	-	-	4	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	5	3	8	25	39	25	39	3	8	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762840423	X	141938613	CA	C	480	PASS	-	-	-	-	-	Del	-	D	141938613	141938619	1	24	432.649	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	5	4	5	24	13	24	13	4	5	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762841288	X	145378444	TG	T	660	PASS	-	-	-	-	-	Del	-	D	145378444	145378448	1	40	594.893	-	-	3	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	4	7	4	37	37	37	37	7	4	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762841303	X	145416335	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	145416335	145416340	2	15	323.885	-	-	2	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	6	3	37	27	37	27	6	3	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762842768	X	151323348	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	151323348	151323355	1	63	741.482	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	15	0	0	./.	6	8	7	10	31	51	31	51	7	10	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762842884	X	152060582	CTATTT	C	389	PASS	-	-	-	-	-	Del	-	D	152060582	152060592	5	14	377.364	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	6	2	7	33	42	33	42	2	7	1	1	1	1	1	1	1	1
2772651	PD7454a	PD7454b	2762843278	X	153923158	T	TTG	420	PASS	GAB3	CCDS48198.1	r.?	-	-	Ins	intronic	I	153923158	153923159	2	20	370.139	-	-	0	1	1	GAB3|CCDS48198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GAB3|CCDS48198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	3	5	3	26	21	26	21	5	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758782852	1	33475575	CAG	C	280	PASS	AK2	CCDS373.1	r.1594_1595delCU	c.?	p.?	Del	3'UTR variant	D	33475575	33475578	2	9	430.009	-	-	1	1	1	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	16	13	16	0	0	./.	8	0	8	0	41	23	41	23	8	0	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758785730	1	43010036	CAGTG	C	389	PASS	CCDC30	CCDS30690.1	r.?	-	-	Del	intronic	D	43010036	43010042	4	20	376.258	-	-	1	1	1	CCDC30|CCDS30690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC30|CCDS30690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	3	5	5	14	20	14	20	5	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758787412	1	48418323	GTGTC	G	807	PASS	-	-	-	-	-	Del	-	D	48418323	48418333	4	72	801.45	-	-	2	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	7	8	8	12	31	27	31	27	8	12	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758799837	1	100162490	TGTGAGGACTCAATTTGTCAGCGAATTAAAAGAACCAG	T	493	PASS	PALMD	CCDS758.1	r.?	-	-	Del	downstream	D	100162490	100162531	37	90	911.963	-	-	1	1	1	PALMD|CCDS758.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PALMD|CCDS758.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	13	15	13	0	0	./.	9	8	6	5	10	10	13	13	9	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758802750	1	112124045	AGACAGAGTCCAGGGAGGCTGCTAAATATCCTTTAATGTACAGCACAGCCCCTCATGACAAAGAATTATCTGGCCATTGCCAACAATGTGGAGGTCAAGAAACCCTATTCTAAAGGAAGAAAAAACAGACCAAGAAT	A	377	PASS	RAP1A	CCDS840.1	r.?	-	-	Del	intronic	D	112124045	112124183	136	44	698.765	-	-	1	1	1	RAP1A|CCDS840.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAP1A|CCDS840.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	10	0	0	15	11	18	25	3	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758811837	1	158519166	AT	A	1169	PASS	OR6Y1	CCDS30899.1	r.?	-	-	Del	upstream	D	158519166	158519168	1	112	1065.39	-	-	1	1	1	OR6Y1|CCDS30899.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	OR6Y1|CCDS30899.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	16	9	16	0	0	./.	13	7	15	8	33	23	33	23	15	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758813827	1	164752965	G	GT	300	PASS	PBX1	CCDS1246.1	r.?	-	-	Ins	intronic	I	164752965	164752975	1	12	265.745	-	-	9	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	4	3	34	27	34	27	4	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758819483	1	181505252	AT	A	540	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181505252	181505258	1	18	483.76	-	-	5	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	8	1	10	4	29	24	29	24	10	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758819922	1	182954592	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	182954592	182954600	1	21	422.182	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	14	10	0	0	./.	6	2	9	3	26	30	27	31	9	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758823189	1	193169888	CGT	C	269	PASS	CDC73	CCDS1382.1	r.?	-	-	Del	intronic	D	193169888	193169906	2	10	259.123	-	-	8	1	1	CDC73|CCDS1382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC73|CCDS1382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	4	1	26	26	26	26	4	1	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758831034	1	215953518	C	CT	420	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	215953518	215953527	1	18	371.441	-	-	8	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	8	27	8	0	0	./.	5	2	10	7	39	30	40	30	10	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758834844	1	226977818	TATTAGAAGCATTCAGAAAGCA	T	406	PASS	-	-	-	-	-	Del	-	D	226977818	226977842	21	39	752.516	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	12	2	8	2	30	27	34	27	12	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758835212	1	227751424	CG	C	2160	PASS	ZNF678	CCDS1560.1	r.182delG	c.?	p.?	Del	5'UTR variant	D	227751424	227751427	1	360	1929.62	-	-	2	1	1	ZNF678|CCDS1560.1|r.182delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	ZNF678|ENST00000440339|r.145delG|c.30delG|p.R11fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	20	17	20	17	0	0	./.	17	19	24	24	42	45	42	45	24	24	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758846295	10	8105520	CATG	C	600	PASS	GATA3	CCDS31143.1	r.?	-	-	Del	intronic	D	8105520	8105529	3	35	537.667	-	-	2	1	1	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	6	5	12	20	31	20	31	5	12	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758850984	10	22019536	AT	A	540	PASS	MLLT10	CCDS7135.1	r.?	-	-	Del	intronic	D	22019536	22019541	1	24	484.322	-	-	4	1	1	MLLT10|CCDS7135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLLT10|CCDS7135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	7	2	9	3	16	9	16	9	9	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758850985	10	22020067	TC	T	300	PASS	MLLT10	CCDS7135.1	r.?	-	-	Del	intronic	D	22020067	22020070	1	12	268.533	-	-	2	1	1	MLLT10|CCDS7135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLLT10|CCDS7135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	2	3	3	8	10	25	10	25	3	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758855513	10	35367862	A	ATTAT	505	PASS	CUL2	CCDS7179.1	r.?	-	-	Ins	intronic	I	35367862	35367863	4	42	566.93	-	-	0	1	1	CUL2|CCDS7179.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CUL2|CCDS7179.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	6	5	9	5	22	15	22	16	9	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758868310	10	80379640	TCTCA	T	478	PASS	-	-	-	-	-	Del	-	D	80379640	80379648	4	30	483.118	-	-	1	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	5	4	7	8	18	24	18	24	7	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758869267	10	83948679	G	GA	300	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	83948679	83948685	1	12	266.124	-	-	5	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	2	4	4	11	16	11	16	4	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758881795	10	126667056	A	AT	420	PASS	ZRANB1	CCDS7642.1	r.?	-	-	Ins	intronic	I	126667056	126667061	1	18	373.417	-	-	4	1	1	ZRANB1|CCDS7642.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZRANB1|CCDS7642.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	5	4	8	21	19	21	19	4	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758885852	11	3991437	CT	C	780	PASS	STIM1	CCDS7749.1	r.?	-	-	Del	intronic	D	3991437	3991439	1	56	692.962	-	-	1	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	6	7	8	8	29	23	29	23	8	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758886081	11	4591934	G	GATTGC	319	PASS	C11orf40	CCDS31354.1	r.?	-	-	Ins	downstream	I	4591934	4591941	5	42	561.39	-	-	1	1	1	C11orf40|CCDS31354.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C11orf40|CCDS31354.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	20	18	20	19	0	0	./.	5	6	5	6	31	17	31	18	5	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758888046	11	10645868	TC	T	509	PASS	MRVI1	CCDS44539.1	r.?	-	-	Del	intronic	D	10645868	10645871	1	24	480.993	-	-	2	1	1	MRVI1|CCDS44539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRVI1|CCDS44539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	7	4	8	17	29	17	29	4	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758896037	11	36672249	TC	T	274	PASS	C11orf74	CCDS7904.1	r.?	-	-	Del	intronic	D	36672249	36672256	1	8	378.32	-	-	6	1	1	C11orf74|CCDS7904.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf74|CCDS7904.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	7	0	7	1	18	10	18	10	7	1	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758904423	11	66929041	CAT	C	3120	PASS	KDM2A	CCDS44657.1	r.?	-	-	Del	intronic	D	66929041	66929045	2	728	2797.74	-	-	1	1	1	KDM2A|CCDS44657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDM2A|CCDS44657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	27	25	36	32	60	59	60	59	36	32	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758905518	11	69192144	T	TGAACGCAGACGCCCGCCCAG	261	PASS	-	-	-	-	-	Ins	-	I	69192144	69192148	20	24	377.439	-	-	0	1	1	-	-	./.	0	0	0	0	8	10	8	11	0	0	./.	7	2	0	0	82	59	83	61	7	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758906109	11	70281301	GATCCTCACACTACAGATCAGGCCTTCTTTGGTTCTTGGGTGGTTTTGGGTTTTTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTGAAGGTGGGGAGGGGAATATACACATTGCTTTTATATTTAATACTTTTGCTGATGCTTTTGAAAATGTTTATGCCACAGAATTTGCTAATATATTGTAATCACATTCCTTAGGAGGACTTTGGTAATTGGTTTTATGCATTGATGGTTTTTTTTTTCTTTTTTGCCAAATTGACTGTCACGCGGCAGCTTCAGGGAGCTCGCATTCTCTTGTGTTCGTGTTGCCCTCGTGCCCATCAAGTGCAGTCGGGACCTCCCAGGACAAGCACGAGGCCTCAGGTCGGCCCTGTGGCGGGTAGGCAGGAAGGACTGTCCCAGACGAGGGGCTTCCTCTAGAGTCTCACTGCTGGGGAGGAGAGGACTGGGCCTGATGGAAGTTAACCCGGAGCTAAGTCACCCAGAGCACAGGAGCTGCCATGTCAGATGGGAAATCTGCCTATGTCATACCGTGACAGCCCGCAGGATCAGGTGACTTCTAGCAGAGACCCTGGTTTTTTTCCTGTGCCCACTCCGGCTTGTCCTCATCTCTACCCATCCCCTGATGCCCAGGTCACCGGGAGGGCTGCTGGGAGCCTCTCCTGTCCCCGCCGGGCAGTGTCACTGAGTCCTTGAAATCCTCCCCTGCCCCGCGGGTCTCTGGATTGGGACGCACAGTGCAGTTGAGGTCTGCGTCGGGCTTGGCTTTTCACAAAGGCTGATGTCTTAACTGTCACCCATATGGTCCCTGGGCCACCGGGCAGCCTGGGGCGGTGTGTGTGCCATGTCACAGCATGGCCTCTCGGCCTTGGGAAGGAAGGCAGTGCCTGCTCTGCTGTGAGCCGCCAGGAACCCTCCTCCTGTCAATGGGGGTGTAGTATTTTTGCCAAAATATCATGTTCAATTTCAGTAGTTTGATCAGTTGAAGGCTAGAAGTGTGAAGTGCAGATGAGTGTGTGTTCTTCCCCAAGGTCCCCCCACAGCTCCAGGACACCGCTGTCCTGGCATTTGTGGCCACTCACTTTGTAGGAAACTCATCTCCTTCCTGAGGAGCCGGGAGGCTGGACCAGTCCCGTCGTGCAGTCAGGTGGGCGGTGTGTCTTTCCAGAAGGTCACGTGGAAATGTCTCGGGACTTGGGTCCCGGAGTGCCCGTGAAGCGTGTTTTTGCTCCTGAGGTGCATTTTCTCATCATCCTTGCTTTACCACAATGAGCAATGAGGTCGGGTTTTATATGCAACTTATTGTATCTGAATTCCTGTAGCACACCTCATAGGTATGATTTTTTTAAATTAAAGAATTCAGAATAAACATTTTTTGATCCACTTGCGTGATTTGCTTTGGTCTGTGGTCACTCCGTTCTGCAGTGGAAGCTGCGTCGACACTCTCGGTGTCCTGCGCCCCGGACCTGGGCTGGCGGAGGCTCTCCTGCCGTCCAGTGCGTCTCACGCGTTCTGTTCTGGCTTTAGACCGAACCGTACGTTCCCTTTTCAGTGTTCATTCAAAGGTGCTGCTTATGAACTGAAATGTGTTTACTCTGGCAGATGATTCAGTTTTTTGCACAAAGGTTCCAAGCAAAATAAAACACTCTGTGCTTAAAAGTCATTTCTGAATTACAGTTCTCAAATCCTGAGGGGGATTTTGCTCCCAGTCTCGTTTTGCTCAGGGGCACCAGAAGTTAAAGGCTAAGGGGAACAGTGGCACTGAGGGAGCAGGTGTGCCCTCGGGAGCCGGGGGTGCTGGGGAGCTGGGTTCCGGCTCACACTTCTGCCCATCAGGTGCTCCCAGGGAGCTTTCGGCTACACGACATGCCTGCTACCCCTTCCAACCTGGGTGGTGACGGAGCACTGCCTCCTCCCTTGGGCTGTCCCACACCTGCCTCTGGCTTAGGAAACAGTGCCTCTGCCAGCTCTGCCCACAGGAGCCTAACGTGAGAGTGCCCCCGCCCTCCTGCCACAACCGGGCTGCTGTGGGTTCTGCATCACAGGGTTGCAGCCCTAACGGCGAGCCCCGTCCCACACAGGGCCTGTCTGCTGGGTGAGATTGCAGCCACCTGCAGGGAGCTGAGTCCTGAAGAAATGAGGCATGAAGGCTTGTGAACCAGGGGAAAGTCCCAGCCAGGGTGGGCAGACGGGGTCAGGGGGCTGGAGGACAGGGTGTGACGAAGGGAGGGGGCCATGCAGAAAGGGCCCCCGCTGGCCCACTGTCTGCCCAGTCGGTGTGTGCCTGTGCCGCCTGCGGATGAGCATGGCAGGGGCTCAACAGGAGCGGGACACATCTTGAGTGGGTCTGTGTTTCTGTTCTATTGGTGGCCAAGCGTGGCCTGGCAGCTTGAGTGCCTGGAGCCAACCACCTGAATCTTAGCCGCTTTCTTTTTAGATGTGGTTGGGGTTTTTTGTTTCTGTTTCTTGAGAAAGGGTCTTGCTCTTTCGCCCAGGCTGGAGT	G	493	PASS	CTTN	CCDS41680.1	r.1855_3234del1380	c.?	p.?	Del	protein_coding:three_prime_UTR:exon:deletion:5KB_downstream_variant:500B_downstream_variant:3_prime_UTR_variant:transcript_variant	D	70281301	70283803	2500	84	906.737	-	-	1	1	-	CTTN|CCDS41680.1|r.1855_3234del1380|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:5KB_downstream_variant:500B_downstream_variant:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001633:SO:0001634:SO:0001624:SO:0001576	CTTN|ENST00000376561|r.1705+77_2111del1213|c.1499+77_1905del1213|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:5KB_downstream_variant:500B_downstream_variant:complex_change_in_transcript:transcript_variant:stop_lost|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001633:SO:0001634:SO:0001577:SO:0001576:SO:0001578	./.	0	0	0	0	4	12	4	12	0	0	./.	6	11	0	0	25	59	31	70	6	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758907459	11	73036595	ACT	A	329	PASS	ARHGEF17	CCDS8221.1	r.?	-	-	Del	intronic	D	73036595	73036613	2	15	324.275	-	-	8	1	1	ARHGEF17|CCDS8221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF17|CCDS8221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	6	4	79	65	79	65	6	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758909028	11	76550097	ATCCTTAATAT	A	443	PASS	-	-	-	-	-	Del	-	D	76550097	76550111	10	30	805.268	-	-	1	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	14	1	0	0	60	39	60	40	14	1	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758912996	11	90526913	TTTTG	T	569	PASS	-	-	-	-	-	Del	-	D	90526913	90526929	4	35	536.243	-	-	3	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	6	4	9	7	15	7	15	4	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758919435	11	119563580	CTGGGGAAAAGA	C	348	PASS	PVRL1	CCDS8426.1	r.?	-	-	Del	intronic	D	119563580	119563592	11	40	647.345	-	-	1	1	1	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	9	4	10	9	16	9	16	4	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758923186	12	1934153	AG	A	840	PASS	CACNA2D4	CCDS44785.1	r.?	-	-	Del	intronic	D	1934153	1934157	1	63	755.683	-	-	3	1	1	CACNA2D4|CCDS44785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D4|CCDS44785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	6	8	8	8	21	24	21	24	8	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758925338	12	8330217	GC	G	411	PASS	ZNF705A	CCDS31737.1	r.1014delC	c.?	p.?	Del	3'UTR variant	D	8330217	8330220	1	16	431.303	-	-	2	1	1	ZNF705A|CCDS31737.1|r.1014delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ZNF705A|CCDS31737.1|r.1014delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	16	14	16	14	0	0	./.	7	1	8	3	16	16	16	16	8	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758936005	12	44782996	AT	A	660	PASS	TMEM117	CCDS8745.1	r.2214delU	c.?	p.?	Del	3'UTR variant	D	44782996	44783002	1	42	594.697	-	-	5	1	1	TMEM117|CCDS8745.1|r.2214delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TMEM117|CCDS8745.1|r.2214delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	11	11	11	0	0	./.	5	6	6	11	18	24	18	24	6	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758936987	12	48890305	TTGTC	T	387	PASS	C12orf54	CCDS8764.1	r.?	-	-	Del	downstream	D	48890305	48890312	4	24	427.089	-	-	1	1	1	C12orf54|CCDS8764.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C12orf54|CCDS8764.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	9	14	9	14	0	0	./.	3	5	3	7	13	26	13	26	3	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758945181	12	78278873	ACTTG	A	449	PASS	NAV3	CCDS41815.1	r.?	-	-	Del	intronic	D	78278873	78278881	4	21	432.507	-	-	1	1	1	NAV3|CCDS41815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAV3|CCDS41815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	6	2	9	20	24	20	24	2	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758945282	12	78606080	ACTT	A	985	PASS	NAV3	CCDS41815.1	r.9049_9051delCUU	c.?	p.?	Del	3'UTR variant	D	78606080	78606089	3	110	1025.4	-	-	2	1	1	NAV3|CCDS41815.1|r.9049_9051delCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	NAV3|CCDS41815.1|r.9049_9051delCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	17	15	17	0	0	./.	9	10	10	11	17	30	17	30	10	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758946525	12	84258424	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	84258424	84258440	2	12	270.317	-	-	7	1	-	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	3	2	3	2	21	23	21	23	3	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758953032	12	106344673	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	106344673	106344677	1	32	534.613	-	-	3	1	1	-	-	./.	0	0	0	0	20	16	21	16	0	0	./.	3	7	6	10	23	23	23	23	6	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758956632	12	118558808	TGGGGC	T	749	PASS	-	-	-	-	-	Del	-	D	118558808	118558818	5	54	702.222	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	5	8	8	10	28	20	28	20	8	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758958956	12	124811877	AGAGGAGCGCG	A	348	PASS	NCOR2	CCDS41858.1	r.?	-	-	Del	intronic	D	124811877	124811896	10	33	637.924	-	-	1	1	1	NCOR2|CCDS41858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCOR2|CCDS41858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	10	2	16	3	24	13	24	13	16	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758968096	13	37027724	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	37027724	37027733	1	28	480.497	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	14	0	0	./.	6	3	9	7	25	26	25	26	9	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758970784	13	45575630	C	CG	720	PASS	KIAA1704	CCDS9394.1	r.?	-	-	Ins	intronic	I	45575630	45575631	1	49	640.663	-	-	0	1	1	KIAA1704|CCDS9394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1704|CCDS9394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	16	23	16	0	0	./.	6	6	10	8	22	22	22	22	10	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758979965	13	76051956	TTTCCCAG	T	261	PASS	TBC1D4	CCDS41901.1	r.?	-	-	Del	intronic	D	76051956	76051967	7	24	485.314	-	-	1	1	1	TBC1D4|CCDS41901.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D4|CCDS41901.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	2	7	0	0	21	21	21	21	2	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758988246	13	104756412	GT	G	600	PASS	-	-	-	-	-	Del	-	D	104756412	104756422	1	35	541.312	-	-	9	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	6	4	9	9	28	23	28	23	9	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758989537	13	108678283	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	108678283	108678292	1	14	375.125	-	-	8	1	1	-	-	./.	0	0	0	0	27	20	27	20	0	0	./.	6	1	9	4	20	16	20	16	9	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758992317	14	21423124	AAATT	A	475	PASS	RNASE2	CCDS9561.1	r.?	-	-	Del	upstream	D	21423124	21423132	4	45	649.063	-	-	1	1	1	RNASE2|CCDS9561.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RNASE2|CCDS9561.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	21	14	21	0	0	./.	8	4	8	4	35	33	35	33	8	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758994841	14	27757956	G	GC	1440	PASS	-	-	-	-	-	Ins	-	I	27757956	27757964	1	160	1274.65	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	9	15	13	18	33	42	33	44	13	18	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758995067	14	28303552	ATAGTTAAATATACATATAATGCACATTCCAATTTTTT	A	364	PASS	-	-	-	-	-	Del	-	D	28303552	28303592	37	99	973.896	-	-	1	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	8	10	3	4	17	24	22	30	8	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2758997769	14	35748043	C	CT	420	PASS	KIAA0391	CCDS32063.1	r.?	-	-	Ins	downstream	I	35748043	35748052	1	18	374.757	-	-	8	1	1	KIAA0391|CCDS32063.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KIAA0391|CCDS32063.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	26	19	26	19	0	0	./.	2	5	4	5	28	31	28	31	4	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759005234	14	57810899	CA	C	1323	PASS	-	-	-	-	-	Del	-	D	57810899	57810906	1	136	1240.98	-	-	6	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	7	16	8	18	15	32	15	32	8	18	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759015674	14	86926949	AACAT	A	747	PASS	-	-	-	-	-	Del	-	D	86926949	86926959	4	64	757.943	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	7	7	12	7	37	31	37	32	12	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759022419	14	106089328	G	GGGGGACAGCGTCAGGGACAGGTGGGGACAGCCT	318	PASS	-	-	-	-	-	Ins	-	I	106089328	106089337	33	27	340.902	-	-	0	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	8	2	0	0	66	25	71	27	8	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759024221	15	22363433	CT	C	600	PASS	-	-	-	-	-	Del	-	D	22363433	22363441	1	35	542.468	-	-	7	1	1	-	-	./.	0	0	0	0	14	34	14	34	0	0	./.	6	4	9	6	36	43	36	43	9	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759030524	15	42144978	GC	G	300	PASS	MAPKBP1	CCDS45239.1	r.?	-	-	Del	intronic	D	42144978	42144982	1	12	255.58	-	-	3	1	1	MAPKBP1|CCDS45239.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	MAPKBP1|CCDS45239.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	3	2	3	2	25	26	25	26	3	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759034729	15	56544402	GT	G	780	PASS	-	-	-	-	-	Del	-	D	56544402	56544406	1	56	705.208	-	-	3	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	6	7	9	9	24	29	24	29	9	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759045409	15	91316036	TA	T	540	PASS	BLM	CCDS10363.1	r.?	-	-	Del	intronic	D	91316036	91316041	1	30	488.221	-	-	4	1	1	BLM|CCDS10363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BLM|CCDS10363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	4	5	6	9	13	24	13	24	6	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759047286	15	97407219	GAATA	G	718	PASS	-	-	-	-	-	Del	-	D	97407219	97407230	4	54	705.208	-	-	2	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	8	5	9	5	21	18	21	18	9	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759049889	16	2594460	GA	G	569	PASS	PDPK1	CCDS10472.1	r.?	-	-	Del	intronic	D	2594460	2594466	1	27	541.871	-	-	5	1	1	PDPK1|CCDS10472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDPK1|CCDS10472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	2	8	5	11	16	22	16	22	5	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759061127	16	33889397	ATTCGATGATGATTCCT	A	319	PASS	-	-	-	-	-	Del	-	D	33889397	33889429	16	40	593.65	-	-	1	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	4	7	3	6	23	23	24	24	4	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759064582	16	54401732	AGTTTGTTG	AC	377	PASS	ENSG00000227093	ENST00000449142	r.?	-	-	Complex	intronic	DI	54401733	54401740	8	54	0	-	-	0	1	1	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ENSG00000227093|ENST00000449142|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	8	0	0	23	18	23	18	5	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759066421	16	60414439	TG	T	629	PASS	-	-	-	-	-	Del	-	D	60414439	60414446	1	36	593.65	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	8	3	8	4	26	13	26	13	8	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759066492	16	60596137	CATCTTCACTGAAT	C	319	PASS	-	-	-	-	-	Del	-	D	60596137	60596153	13	22	596.058	-	-	1	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	10	1	12	1	21	1	21	1	12	1	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759068213	16	66749471	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	66749471	66749479	1	40	589.435	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	7	5	8	14	22	14	23	5	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759082320	17	21796853	A	AT	1018	PASS	AC138761.1	ENST00000507397	r.?	-	-	Ins	upstream	I	21796853	21796856	1	100	963.911	-	-	2	1	1	AC138761.1|ENST00000507397|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	AC138761.1|ENST00000507397|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	17	17	17	17	0	0	./.	9	9	13	14	56	54	56	55	13	14	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759083956	17	29396814	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	29396814	29396823	1	64	745.828	-	-	8	1	1	-	-	./.	0	0	0	0	21	25	21	25	0	0	./.	7	7	10	8	24	32	24	32	10	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759084523	17	31115072	CGT	C	300	PASS	MYO1D	CCDS32615.1	r.?	-	-	Del	intronic	D	31115072	31115091	2	12	271.098	-	-	9	1	1	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	2	3	18	32	18	32	2	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759086175	17	36481400	CCAGTTGCCTTGACAAAAGAGAGAGGTCCTGTTGATGG	C	261	PASS	GPR179	CCDS42308.1	r.?	-	-	Del	downstream	D	36481400	36481441	37	30	484.966	-	-	1	1	1	GPR179|CCDS42308.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	GPR179|CCDS42308.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	11	11	11	0	0	./.	4	5	2	3	15	14	17	16	4	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759088399	17	42512616	C	CA	720	PASS	GPATCH8	CCDS32666.1	r.?	-	-	Ins	intronic	I	42512616	42512626	1	49	641.002	-	-	9	1	1	GPATCH8|CCDS32666.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPATCH8|CCDS32666.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	15	5	15	0	0	./.	6	6	8	8	22	22	22	22	8	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759092383	17	53590618	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	53590618	53590626	1	50	697.027	-	-	7	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	9	7	14	22	24	22	24	7	14	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759094531	17	60724477	CT	C	780	PASS	MRC2	CCDS11634.1	r.?	-	-	Del	intronic	D	60724477	60724481	1	50	704.252	-	-	3	1	1	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRC2|CCDS11634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	4	9	5	13	16	26	16	26	5	13	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759098276	17	72529825	GA	G	478	PASS	CD300LB	CCDS11700.1	r.?	-	-	Del	upstream	D	72529825	72529831	1	24	487.374	-	-	5	1	1	CD300LB|CCDS11700.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CD300LB|CCDS11700.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	14	10	16	0	0	./.	7	2	11	6	22	17	24	18	11	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759106690	18	21694231	T	TGAGCTGAGCCCTTAACACCTGAGCAAAGGAGAGAACGCTGGAGGAGAAGGCGGGTGC	300	PASS	TTC39C	CCDS45839.1	r.?	-	-	Ins	intronic	I	21694231	21694285	57	12	98.9358	-	-	0	1	1	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC39C|CCDS45839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	2	3	0	0	38	45	39	45	2	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759107941	18	26507818	CT	C	1680	PASS	-	-	-	-	-	Del	-	D	26507818	26507821	1	224	1517.1	-	-	2	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	13	15	16	24	20	31	20	31	16	24	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759108389	18	28306537	TATACATTCATGCTTTGTTCTA	T	261	PASS	-	-	-	-	-	Del	-	D	28306537	28306560	21	28	488.025	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	6	3	6	3	18	25	18	25	6	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759111177	18	39267239	CAGA	C	1852	PASS	-	-	-	-	-	Del	-	D	39267239	39267244	3	336	1895.47	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	20	15	26	18	29	26	29	26	26	18	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759111407	18	40047164	AACTC	A	2874	PASS	-	-	-	-	-	Del	-	D	40047164	40047175	4	690	2765.47	-	-	2	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	29	22	36	25	41	33	41	33	36	25	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759134435	19	32793827	AAT	A	420	PASS	-	-	-	-	-	Del	-	D	32793827	32793834	2	18	379.699	-	-	3	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	5	2	7	11	26	11	26	2	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759137195	19	37977952	CAGTT	C	2121	PASS	ZNF570	CCDS12504.1	r.?	-	-	Del	downstream	D	37977952	37977959	4	440	2148.04	-	-	1	1	1	ZNF570|CCDS12504.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF570|CCDS12504.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	8	11	8	0	0	./.	19	21	21	26	28	31	28	31	21	26	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759137727	19	38985484	CA	C	300	PASS	RYR1	CCDS33011.1	r.?	-	-	Del	intronic	D	38985484	38985486	1	6	260.377	-	-	1	1	1	RYR1|CCDS33011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR1|CCDS33011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	0	5	0	10	19	57	19	57	0	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759143823	19	57792203	AGGTGAGTGGACGAGGTTTCGGCCTTGCTGCTGCTGTGCTATTTCTAGAGGCCTCGTGGGCAGGCTGGAAGCCAAGACAGCCACAGGATTTTTCTTTGTCGCCATCGTTTATTTAAGAGAAATGGCCGTGGCTTGTCATTTCCTTTATCCGCAGTCCTGCAACAGTGTTGGCCTCTGATAGGTGTTCAGTCCGTGGTTGAAGGAGTGATGCTTCCTTCTAGGGATCTCATCACACTTCCCCTAAATCCAACCTTCTCTGTTGCCTGCCAGCCCGTACCCCATCCACCTGGCCAACCACCCCTGACCTTGTCTGTTTGCATTTTTCCCTGGTCCTTTGCTCTTCAGAGCCACCAACCTGACCGTGCAGTCCTCTTCCATTTTCCAGGCTTTCTCCTTGCACTTCCTTTTACTTCGAACACTGCCCCTGTAACTTTGCAGGGCCTCCCTTTCACATCCTTTTGGCATCTGTCCAGGTGTCACCTATTTGGAGGTGCCTTTTTTGGCAATTCCGGCTAAAGTGGCACCTTACACCCTTGCCCAGAGTCTGGTATTTTTGTGTAGATAATCTGATGGTATTAAAGAAGCTTGTGGATTTGAGTTTGTCAAGGATGTAATGGGAACAAAGAAAAATAATTGCAAAGAATGATATTAACTGTCATTGAGTCCTTGCTGTGGGCTGATCGGTGAGTATTATTTAACCCTCAGTTCGTTTAACCCTGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGTTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGACCTCGGCTCACTGCAACCTCCGCCTTTTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTACCGTGTTGGCCACGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCATCTGGGTCTCCCAAAGTGCTGGGATTACTCTTTAGAATTAGGTTCTGTTGTCATCATTGTTTTACACAAGAGCAATTTGAGGGTCACATACGTCCAATTACCTGCCTTACATCACTGTAGCTCTTAAGTTTCTTAAGTCAGAAACTAACAACTGGTGTGTCTAACATCATAGCCTGTGTTTTTACCCTCTTCTTTACCCGCAGTGGTTAGGGAGGCCTGGGGGTGAGACCTAAAGTAACCTTTGCAAGATGAGGCCTCCTTCTAGCCAGTGATCTTGGGCATGAGGAGTCATGGCCTTTCATACTG	A	348	PASS	ZNF460	CCDS12949.1	r.352_352+1283del1284	c.30_30+1283del1284	p.?	Del	ess splice	D	57792203	57793489	1284	40	650.311	-	-	1	1	-	ZNF460|CCDS12949.1|r.352_352+1283del1284|c.30_30+1283del1284|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	ZNF460|CCDS12949.1|r.352_352+1283del1284|c.30_30+1283del1284|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	11	13	11	13	0	0	./.	9	3	0	0	29	24	38	27	9	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759143824	19	57793842	CCT	C	1523	PASS	ZNF460	CCDS12949.1	r.?	-	-	Del	intronic	D	57793842	57793845	2	198	1569.43	-	-	1	1	1	ZNF460|CCDS12949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF460|CCDS12949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	21	8	24	10	71	42	71	42	24	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759144508	2	724153	GTCTT	G	929	PASS	-	-	-	-	-	Del	-	D	724153	724160	4	77	861.257	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	10	9	13	22	36	22	36	9	13	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759149229	2	16620474	CT	C	900	PASS	-	-	-	-	-	Del	-	D	16620474	16620476	1	60	806.789	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	11	6	15	15	33	15	33	6	15	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759149405	2	17517797	T	TA	385	PASS	-	-	-	-	-	Ins	-	I	17517797	17517807	1	20	372.849	-	-	9	1	1	-	-	./.	0	0	0	0	14	26	14	26	0	0	./.	4	3	6	7	21	19	22	20	6	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759151341	2	24611097	ACT	A	1078	PASS	-	-	-	-	-	Del	-	D	24611097	24611103	2	90	1023.46	-	-	2	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	5	14	9	17	30	30	30	30	9	17	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759163066	2	64973215	TGAAA	T	329	PASS	-	-	-	-	-	Del	-	D	64973215	64973230	4	15	323.197	-	-	3	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	4	4	16	15	16	15	4	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759164311	2	69097380	C	CA	420	PASS	BMP10	CCDS1890.1	r.?	-	-	Ins	intronic	I	69097380	69097387	1	20	372.849	-	-	6	1	-	BMP10|CCDS1890.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BMP10|CCDS1890.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	18	19	0	0	./.	4	3	7	8	27	24	27	24	7	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759167222	2	80841173	AAAG	A	449	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80841173	80841182	3	24	430.929	-	-	2	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	5	4	9	14	26	14	26	4	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759172821	2	104266906	TA	T	1101	PASS	-	-	-	-	-	Del	-	D	104266906	104266911	1	144	1238.92	-	-	4	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	8	15	13	19	28	30	28	30	13	19	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759174922	2	113048861	AGTGCAGT	A	331	PASS	ZC3H6	CCDS46393.1	r.?	-	-	Del	intronic	D	113048861	113048870	7	49	637.965	-	-	1	1	1	ZC3H6|CCDS46393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZC3H6|CCDS46393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	27	27	27	0	0	./.	6	6	6	5	29	31	29	33	6	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759176155	2	118441070	ATTC	A	929	PASS	-	-	-	-	-	Del	-	D	118441070	118441078	3	65	859.451	-	-	2	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	12	4	14	7	17	10	17	10	14	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759185458	2	161971383	TA	T	600	PASS	-	-	-	-	-	Del	-	D	161971383	161971385	1	20	538.662	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	9	1	17	6	20	9	20	9	17	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759203440	20	3801625	CT	C	929	PASS	C20orf29	CCDS13070.1	r.?	-	-	Del	intronic	D	3801625	3801629	1	81	866.301	-	-	3	1	1	C20orf29|CCDS13070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C20orf29|CCDS13070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	8	8	8	15	21	29	21	29	8	15	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759208177	20	20044482	TG	T	720	PASS	C20orf26	CCDS33447.1	r.?	-	-	Del	intronic	D	20044482	20044484	1	48	651.984	-	-	1	1	1	C20orf26|CCDS33447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf26|CCDS33447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	7	5	8	5	17	17	17	17	8	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759209400	20	25300879	GGAAGCCAA	G	319	PASS	ABHD12	CCDS13172.1	r.770_777delUUGGCUUC	c.490_497delTTGGCTTC	p.L164fs*38	Del	frameshift	D	25300879	25300889	8	42	592.835	-	-	1	1	1	ABHD12|CCDS13172.1|r.770_777delUUGGCUUC|c.490_497delTTGGCTTC|p.L164fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ABHD12|CCDS13172.1|r.770_777delUUGGCUUC|c.490_497delTTGGCTTC|p.L164fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	12	12	12	0	0	./.	5	6	6	6	17	23	17	23	6	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759212926	20	35363667	CT	C	637	PASS	NDRG3	CCDS13285.1	r.?	-	-	Del	intronic	D	35363667	35363673	1	42	597.652	-	-	5	1	1	NDRG3|CCDS13285.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NDRG3|CCDS13285.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	5	6	8	10	23	30	23	30	8	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759215770	20	45465951	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	45465951	45465969	2	12	271.058	-	-	8	1	-	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	3	2	35	40	35	40	3	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759222085	20	62490372	TGG	T	300	PASS	C20orf135	CCDS13539.1	r.?	-	-	Del	upstream	D	62490372	62490376	2	10	271.66	-	-	3	1	1	C20orf135|CCDS13539.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TPD52L2|ENST00000369927|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	4	1	5	2	33	29	33	29	5	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759226228	21	15789863	AG	A	900	PASS	-	-	-	-	-	Del	-	D	15789863	15789867	1	72	808.267	-	-	3	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	8	7	10	11	19	25	19	25	10	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759229187	21	25145299	CATT	C	1016	PASS	-	-	-	-	-	Del	-	D	25145299	25145307	3	98	1033.12	-	-	2	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	13	8	16	22	32	22	32	8	16	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759246170	3	2303707	A	AT	660	PASS	CNTN4	CCDS43041.1	r.?	-	-	Ins	intronic	I	2303707	2303717	1	36	585.215	-	-	9	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	8	6	9	21	28	21	28	6	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759250177	3	14297167	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	14297167	14297180	2	10	269.565	-	-	6	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	4	21	25	21	25	1	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759254775	3	32290757	C	CA	540	PASS	CMTM8	CCDS2652.1	r.?	-	-	Ins	intronic	I	32290757	32290764	1	24	478.594	-	-	6	1	1	CMTM8|CCDS2652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CMTM8|CCDS2652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	7	2	10	5	31	15	31	15	10	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759258086	3	45348439	TC	T	360	PASS	-	-	-	-	-	Del	-	D	45348439	45348449	1	12	316.855	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	1	5	1	10	18	28	18	28	1	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759260748	3	54385328	A	AT	327	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Ins	intronic	I	54385328	54385334	1	20	371.972	-	-	5	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	10	5	27	19	27	19	10	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759264750	3	67916713	TGG	T	956	PASS	-	-	-	-	-	Del	-	D	67916713	67916716	2	96	967.422	-	-	2	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	7	11	10	16	27	35	27	35	10	16	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759275216	3	106490995	AAATT	A	418	PASS	-	-	-	-	-	Del	-	D	106490995	106491004	4	21	430.701	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	6	4	7	14	17	14	17	4	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759277078	3	112647593	ATCT	A	449	PASS	CD200R1	CCDS2970.1	r.?	-	-	Del	intronic	D	112647593	112647598	3	24	431.303	-	-	1	1	1	CD200R1|CCDS2970.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD200R1|CCDS2970.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	5	3	5	3	21	16	21	16	5	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759279348	3	120573281	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	120573281	120573282	1	36	533.109	-	-	0	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	5	5	7	17	28	17	28	5	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759280544	3	124958642	CCAACTATAAAAATGGAATGG	C	290	PASS	ZNF148	CCDS3031.1	r.?	-	-	Del	intronic	D	124958642	124958663	20	11	539.129	-	-	1	1	1	ZNF148|CCDS3031.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF148|CCDS3031.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	0	10	1	6	16	19	16	22	1	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759285446	3	142723754	GGAGA	G	476	PASS	SR140	CCDS46928.1	r.?	-	-	Del	intronic	D	142723754	142723768	4	35	539.129	-	-	6	1	1	SR140|CCDS46928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SR140|CCDS46928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	4	6	5	9	7	23	7	23	5	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759286679	3	147013101	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	147013101	147013106	1	10	266.554	-	-	4	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	4	1	4	1	17	6	18	6	4	1	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759289196	3	156196132	AC	A	660	PASS	KCNAB1	CCDS33882.1	r.?	-	-	Del	intronic	D	156196132	156196136	1	36	593.042	-	-	3	1	1	KCNAB1|CCDS33882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNAB1|CCDS33882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	8	3	11	6	28	13	28	13	11	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759290453	3	161279531	A	AG	720	PASS	-	-	-	-	-	Ins	-	I	161279531	161279535	1	33	639.73	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	10	2	13	3	32	19	33	19	13	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759292351	3	167962052	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	167962052	167962059	1	10	266.554	-	-	6	1	1	-	-	./.	0	0	0	0	14	24	14	25	0	0	./.	1	4	3	6	15	12	16	12	3	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759298349	3	189474231	TAA	T	480	PASS	TP63	CCDS3293.1	r.?	-	-	Del	intronic	D	189474231	189474235	2	25	430.701	-	-	3	1	1	TP63|CCDS3293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TP63|CCDS3293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	4	7	4	20	14	20	14	7	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759302235	4	4768384	CT	C	600	PASS	-	-	-	-	-	Del	-	D	4768384	4768388	1	35	539.198	-	-	3	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	4	11	10	20	12	20	12	11	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759307269	4	28709642	T	TC	780	PASS	-	-	-	-	-	Ins	-	I	28709642	28709645	1	56	692.709	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	15	0	0	./.	6	7	8	11	11	15	11	15	8	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759308628	4	36269814	ATAGT	A	1177	PASS	-	-	-	-	-	Del	-	D	36269814	36269822	4	105	1079.6	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	14	6	19	7	23	13	23	13	19	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759312986	4	56185317	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	56185317	56185322	1	18	373.044	-	-	4	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	5	4	5	13	17	13	17	4	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759321750	4	95583711	ATT	A	960	PASS	PDLIM5	CCDS3641.1	r.?	-	-	Del	intronic	D	95583711	95583714	2	77	863.68	-	-	2	1	1	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	10	6	12	9	14	10	14	10	12	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759322158	4	97778926	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	97778926	97778933	1	35	531.371	-	-	6	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	4	6	5	7	7	10	7	10	5	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759325915	4	118242022	GTGA	G	784	PASS	-	-	-	-	-	Del	-	D	118242022	118242033	3	70	802.475	-	-	3	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	6	9	9	11	23	20	23	20	9	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759335440	4	159965644	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	159965644	159965654	1	24	426.422	-	-	9	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	5	3	8	7	30	18	30	19	8	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759342810	4	186101534	CCATT	CG	658	PASS	KIAA1430	CCDS47168.1	r.?	-	-	Complex	intronic	DI	186101535	186101538	4	24	0	-	-	0	1	1	KIAA1430|CCDS47168.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	KIAA1430|CCDS47168.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	11	1	0	0	16	5	16	5	11	1	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759348070	5	9160345	TTGTC	T	896	PASS	SEMA5A	CCDS3875.1	r.?	-	-	Del	intronic	D	9160345	9160354	4	78	917.545	-	-	2	1	1	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	5	12	7	14	18	27	18	27	7	14	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759354497	5	29980065	AG	A	300	PASS	-	-	-	-	-	Del	-	D	29980065	29980067	1	12	269.264	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	2	3	3	4	20	18	20	18	3	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759361914	5	58199763	CA	C	600	PASS	-	-	-	-	-	Del	-	D	58199763	58199773	1	35	539.732	-	-	9	1	-	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	4	10	8	20	17	20	17	10	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759362773	5	61726633	TA	T	360	PASS	IPO11	CCDS34167.1	r.?	-	-	Del	intronic	D	61726633	61726635	1	15	323.839	-	-	1	1	1	IPO11|CCDS34167.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IPO11|CCDS34167.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	4	4	4	18	5	18	5	4	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759363990	5	66219400	G	GT	869	PASS	MAST4	CCDS47225.1	r.?	-	-	Ins	intronic	I	66219400	66219408	1	72	799.363	-	-	7	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	15	0	0	./.	8	7	10	12	29	22	29	22	10	12	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759367277	5	79309650	CGTTCTTGGCATAG	C	464	PASS	-	-	-	-	-	Del	-	D	79309650	79309665	13	72	863.571	-	-	1	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	5	11	5	10	21	25	21	26	5	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759395696	6	5461199	CTG	C	540	PASS	FARS2	CCDS4494.1	r.?	-	-	Del	intronic	D	5461199	5461219	2	28	486.198	-	-	9	1	-	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	21	21	21	0	0	./.	3	6	3	7	26	35	26	35	3	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759399222	6	15264474	CTGA	C	896	PASS	JARID2	CCDS4533.1	r.?	-	-	Del	intronic	D	15264474	15264482	3	88	915.966	-	-	2	1	1	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	7	10	8	11	19	23	19	23	8	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759400924	6	20373461	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	20373461	20373468	1	32	534.199	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	7	6	11	19	30	19	30	6	11	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759414629	6	63229681	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	63229681	63229685	1	40	587.619	-	-	3	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	7	5	8	13	16	13	16	5	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759429327	6	141077280	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	141077280	141077289	1	36	534.199	-	-	8	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	5	5	6	6	14	14	14	15	6	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759437112	7	3606366	A	AG	269	PASS	SDK1	CCDS34590.1	r.?	-	-	Ins	intronic	I	3606366	3606367	1	12	253.441	-	-	0	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	3	2	38	21	38	24	3	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759442903	7	19188613	G	GA	300	PASS	FERD3L	CCDS5368.1	r.?	-	-	Ins	upstream	I	19188613	19188623	1	12	256.451	-	-	9	1	1	FERD3L|CCDS5368.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FERD3L|CCDS5368.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	20	13	20	0	0	./.	2	3	2	2	41	22	41	22	2	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759443228	7	20206155	TTTCTCCCAG	T	435	PASS	MACC1	CCDS5369.1	r.?	-	-	Del	intronic	D	20206155	20206167	9	72	809.09	-	-	1	1	1	MACC1|CCDS5369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MACC1|CCDS5369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	8	7	9	8	31	27	31	27	9	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759443378	7	20624572	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	20624572	20624588	2	12	269.094	-	-	7	1	-	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	4	2	38	33	38	33	4	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759446369	7	28390180	G	GA	300	PASS	CREB5	CCDS43562.1	r.?	-	-	Ins	intronic	I	28390180	28390190	1	10	266.084	-	-	9	1	-	CREB5|CCDS43562.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CREB5|CCDS43562.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	17	0	0	./.	1	4	1	4	31	52	31	52	1	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759448408	7	34256534	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	34256534	34256553	2	12	265.482	-	-	9	1	-	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	2	3	2	3	39	54	39	54	2	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759454880	7	53498607	C	CAT	358	PASS	-	-	-	-	-	Ins	-	I	53498607	53498613	2	18	369.146	-	-	2	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	2	5	6	7	35	33	35	35	6	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759465094	7	79353301	AG	A	660	PASS	-	-	-	-	-	Del	-	D	79353301	79353305	1	40	590.924	-	-	3	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	4	7	9	19	24	19	24	7	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759467777	7	89182650	G	GA	1080	PASS	-	-	-	-	-	Ins	-	I	89182650	89182659	1	99	960.07	-	-	8	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	10	8	18	15	35	24	35	24	18	15	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759472009	7	104748058	C	CAGTT	509	PASS	MLL5	CCDS34723.1	r.3699_3700insaguu	c.3154_3155insAGTT	p.D1054fs*20	Ins	frameshift	I	104748058	104748060	4	28	463.78	-	-	0	1	1	MLL5|CCDS34723.1|r.3699_3700insaguu|c.3154_3155insAGTT|p.D1054fs*20|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MLL5|CCDS34723.1|r.3699_3700insaguu|c.3154_3155insAGTT|p.D1054fs*20|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	25	16	25	16	0	0	./.	6	3	6	4	11	8	11	8	6	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759477236	7	130590148	CG	C	720	PASS	-	-	-	-	-	Del	-	D	130590148	130590151	1	45	647.272	-	-	2	1	1	-	-	./.	0	0	0	0	25	25	25	25	0	0	./.	8	4	8	6	10	11	10	11	8	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759481864	7	151538510	AGGGATGGTAGTGATAGTAGGTAGGGATGGTAGTGATAGTAGTGATGGTAGGTAATGATGATGGTAGTGATGGTAGGTT	A	389	PASS	PRKAG2	CCDS43683.1	r.?	-	-	Del	intronic	D	151538510	151538603	78	18	369.146	-	-	1	1	-	PRKAG2|CCDS43683.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRKAG2|CCDS43683.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	2	5	0	0	25	10	25	10	2	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759496604	8	55002052	T	TG	480	PASS	LYPLA1	CCDS6157.1	r.?	-	-	Ins	intronic	I	55002052	55002062	1	9	418.971	-	-	9	1	1	LYPLA1|CCDS6157.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LYPLA1|CCDS6157.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	8	0	12	3	18	12	18	12	12	3	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759496874	8	56296067	TA	T	660	PASS	XKR4	CCDS34893.1	r.?	-	-	Del	intronic	D	56296067	56296069	1	42	593.319	-	-	1	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	6	7	6	9	6	9	6	7	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759498340	8	65183314	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	65183314	65183323	1	63	749.003	-	-	8	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	6	8	9	9	13	13	13	13	9	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759507691	8	106791968	CTTAA	C	658	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Del	intronic	D	106791968	106791976	4	45	649.228	-	-	1	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	8	5	10	18	23	18	23	5	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759508409	8	110044297	TAAAG	T	627	PASS	-	-	-	-	-	Del	-	D	110044297	110044305	4	45	645.013	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	8	4	9	7	26	17	26	17	9	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759520237	9	10767794	GT	G	480	PASS	-	-	-	-	-	Del	-	D	10767794	10767798	1	24	433.809	-	-	3	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	5	6	8	8	10	8	10	6	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759520327	9	11251947	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	11251947	11251954	1	21	428.992	-	-	6	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	2	6	2	8	4	8	4	8	2	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759521128	9	15117572	GC	G	900	PASS	-	-	-	-	-	Del	-	D	15117572	15117577	1	70	813.392	-	-	4	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	9	6	12	9	15	10	15	10	12	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759522932	9	24445600	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	24445600	24445609	1	25	427.186	-	-	8	1	1	-	-	./.	0	0	0	0	7	18	7	19	0	0	./.	4	4	6	5	7	11	7	11	6	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759535776	9	106587565	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	106587565	106587573	1	12	268.12	-	-	7	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	2	4	6	5	6	5	2	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759545574	X	13489742	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	13489742	13489749	1	24	428.432	-	-	6	1	1	-	-	./.	0	0	0	0	15	15	16	15	0	0	./.	5	3	9	6	31	34	32	34	9	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759547310	X	22346680	CTCTT	C	292	PASS	-	-	-	-	-	Del	-	D	22346680	22346685	4	10	487.405	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	0	9	4	12	14	26	14	28	4	14	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759550128	X	35490022	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	35490022	35490039	2	12	270.78	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	4	2	22	25	22	25	4	2	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759552847	X	49012633	AC	A	780	PASS	-	-	-	-	-	Del	-	D	49012633	49012639	1	56	704.029	-	-	5	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	7	6	8	14	21	30	21	30	8	14	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759554968	X	66983094	A	AT	472	PASS	-	-	-	-	-	Ins	-	I	66983094	66983097	1	40	642.648	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	9	4	10	10	20	11	20	4	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759557970	X	82538377	CT	C	298	PASS	-	-	-	-	-	Del	-	D	82538377	82538386	1	15	324.936	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	2	4	2	5	9	19	9	19	2	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759558405	X	84985333	G	GT	356	PASS	-	-	-	-	-	Ins	-	I	84985333	84985337	1	40	589.094	-	-	3	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	7	4	9	8	21	30	21	30	9	8	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759559538	X	89807349	ATACT	A	344	PASS	-	-	-	-	-	Del	-	D	89807349	89807357	4	30	487.405	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	5	4	6	6	21	12	21	12	6	6	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759562218	X	103369076	CCCACT	C	838	PASS	MCART6	CCDS35363.1	r.?	-	-	Del	intronic	D	103369076	103369082	5	52	811.137	-	-	1	1	1	MCART6|CCDS35363.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MCART6|CCDS35363.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	12	3	15	5	25	14	25	14	15	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759563972	X	113812901	CTCTGTTTTTAAGAAAGTTCAATATCTAT	C	261	PASS	-	-	-	-	-	Del	-	D	113812901	113812931	28	30	487.405	-	-	1	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	5	4	5	3	17	17	17	18	5	4	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759564838	X	117447013	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	117447013	117447022	1	10	266.566	-	-	8	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	1	4	5	7	18	20	18	20	5	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759565405	X	119413778	G	GT	780	PASS	FAM70A	CCDS43986.1	r.?	-	-	Ins	intronic	I	119413778	119413785	1	44	696.202	-	-	6	1	1	FAM70A|CCDS43986.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM70A|CCDS43986.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	3	10	7	10	23	27	23	27	7	10	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759566894	X	126549782	AC	A	660	PASS	-	-	-	-	-	Del	-	D	126549782	126549785	1	40	595.717	-	-	2	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	7	4	10	5	22	28	22	28	10	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759568483	X	134445460	A	AT	660	PASS	ZNF75D	CCDS14648.1	r.?	-	-	Ins	intronic	I	134445460	134445468	1	40	589.094	-	-	7	1	1	ZNF75D|CCDS14648.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF75D|CCDS14648.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	4	7	6	9	28	28	28	29	6	9	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759569329	X	138662494	G	GA	300	PASS	MCF2	CCDS48175.1	r.?	-	-	Ins	downstream	I	138662494	138662503	1	6	267.77	-	-	8	1	1	MCF2|CCDS48175.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MCF2|CCDS48175.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	25	16	25	0	0	./.	0	5	5	5	17	20	17	20	5	5	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759569474	X	139226879	CA	C	360	PASS	-	-	-	-	-	Del	-	D	139226879	139226881	1	7	313.497	-	-	1	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	0	6	0	7	4	11	4	11	0	7	1	1	1	1	1	1	1	1
2772636	PD7455a	PD7455b	2759572019	X	151080861	TC	T	569	PASS	MAGEA4	CCDS14702.1	r.?	-	-	Del	upstream	D	151080861	151080867	1	27	531.928	-	-	5	1	1	MAGEA4|CCDS14702.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MAGEA4|CCDS14702.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	10	7	10	0	0	./.	2	8	4	11	12	23	12	23	4	11	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755778797	1	84647277	ATTG	A	300	PASS	PRKACB	CCDS691.1	r.?	-	-	Del	intronic	D	84647277	84647289	3	12	268.957	-	-	3	1	1	PRKACB|CCDS691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKACB|CCDS691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	2	3	24	24	24	24	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755783234	1	99779363	AAC	A	329	PASS	ENSG00000117600	CCDS757.1	r.?	-	-	Del	downstream	D	99779363	99779367	2	12	313.718	-	-	1	1	-	ENSG00000117600|CCDS757.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000117600|CCDS757.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	10	15	10	0	0	./.	5	1	0	0	28	24	28	24	5	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755784744	1	105244852	TA	T	360	PASS	-	-	-	-	-	Del	-	D	105244852	105244862	1	15	322.146	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	4	2	4	33	20	33	20	2	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755789477	1	121362229	AC	A	600	PASS	-	-	-	-	-	Del	-	D	121362229	121362231	1	19	968.245	-	-	1	1	1	-	-	./.	0	0	0	0	28	46	28	46	0	0	./.	18	0	21	0	152	49	152	49	21	0	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755798588	1	164939463	AATG	A	418	PASS	-	-	-	-	-	Del	-	D	164939463	164939470	3	16	430.331	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	1	7	3	8	18	20	18	20	3	8	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755805056	1	186684276	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	186684276	186684282	1	18	372.325	-	-	5	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	2	5	4	9	19	36	19	36	4	9	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755823018	1	237414406	AG	A	720	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237414406	237414408	1	48	644.895	-	-	1	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	5	7	6	9	24	23	25	23	6	9	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755823702	1	239325499	GA	G	300	PASS	-	-	-	-	-	Del	-	D	239325499	239325507	1	12	268.355	-	-	7	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	3	2	4	3	23	32	23	32	4	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755826086	1	245258265	TGACCATAAGGACAGAAAGCA	T	377	PASS	EFCAB2	CCDS44341.1	r.?	-	-	Del	intronic	D	245258265	245258287	20	54	699.288	-	-	1	1	1	EFCAB2|CCDS44341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFCAB2|CCDS44341.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	8	5	5	28	30	28	34	5	9	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755829079	10	3649386	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	3649386	3649392	1	18	373.585	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	3	7	24	22	24	22	3	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755837558	10	26657125	CACTT	C	269	PASS	-	-	-	-	-	Del	-	D	26657125	26657131	4	6	269.857	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	0	5	0	7	18	30	18	30	0	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755849871	10	64429750	G	GT	300	PASS	ZNF365	CCDS7264.1	r.?	-	-	Ins	intronic	I	64429750	64429757	1	12	265.041	-	-	6	1	1	ZNF365|CCDS7264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF365|CCDS7264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	4	4	22	41	22	41	4	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755876842	11	11668252	GT	G	300	PASS	-	-	-	-	-	Del	-	D	11668252	11668255	1	10	270.339	-	-	2	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	1	27	14	27	14	4	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755910108	11	119920945	CG	C	300	PASS	-	-	-	-	-	Del	-	D	119920945	119920948	1	10	270.339	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	1	5	3	18	22	18	22	5	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755913335	11	130425283	GC	G	480	PASS	-	-	-	-	-	Del	-	D	130425283	130425286	1	24	432.543	-	-	2	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	5	5	5	21	23	21	23	5	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755920618	12	17365015	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	17365015	17365034	2	12	270.374	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	2	3	18	26	18	26	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755920973	12	18257243	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	18257243	18257259	2	12	269.772	-	-	7	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	2	3	2	21	16	21	16	3	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755925454	12	31208118	CT	C	259	PASS	AC008013.1	ENST00000500527	r.?	-	-	Del	intronic	D	31208118	31208120	1	8	376.115	-	-	1	1	1	AC008013.1|ENST00000500527|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC008013.1|ENST00000500527|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	0	7	0	9	22	30	22	30	0	9	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755938618	12	75481190	GA	G	420	PASS	KCNC2	CCDS9005.1	r.?	-	-	Del	intronic	D	75481190	75481194	1	14	378.523	-	-	3	1	1	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	6	1	8	2	20	25	20	25	8	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755954742	12	126704822	TA	T	300	PASS	-	-	-	-	-	Del	-	D	126704822	126704832	1	10	269.772	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	4	1	18	17	18	17	4	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755966690	13	43061288	TC	T	540	PASS	-	-	-	-	-	Del	-	D	43061288	43061290	1	30	487.18	-	-	1	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	4	5	5	18	26	18	26	5	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755982608	13	91817597	GA	G	420	PASS	-	-	-	-	-	Del	-	D	91817597	91817605	1	20	379.386	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	3	4	3	20	27	20	27	4	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755988392	13	108678283	TA	T	300	PASS	-	-	-	-	-	Del	-	D	108678283	108678292	1	12	270.99	-	-	8	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	3	2	4	2	24	24	24	24	4	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2755998941	14	45232308	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	45232308	45232317	1	12	268.232	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	2	4	24	23	24	23	2	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756019708	15	20117967	GTGAC	G	347	PASS	-	-	-	-	-	Del	-	D	20117967	20117973	4	13	645.823	-	-	1	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	12	0	11	0	125	32	127	32	13	0	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756033498	15	60641225	C	CG	360	PASS	ANXA2	CCDS10175.1	r.?	-	-	Ins	intronic	I	60641225	60641230	1	7	322.008	-	-	4	1	1	ANXA2|CCDS10175.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANXA2|CCDS10175.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	0	6	3	6	29	26	29	26	3	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756040474	15	81817277	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	81817277	81817286	1	12	268.34	-	-	8	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	2	3	3	3	30	19	30	19	3	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756057749	16	26292507	TA	T	480	PASS	-	-	-	-	-	Del	-	D	26292507	26292517	1	25	433.778	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	4	8	6	27	20	27	20	8	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756128034	18	77626984	GGTGCTGAGAGGTCTGT	G	265	PASS	KCNG2	CCDS12019.1	r.?	-	-	Del	intronic	D	77626984	77627032	16	14	378.667	-	-	2	1	1	KCNG2|CCDS12019.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNG2|CCDS12019.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	27	17	27	0	0	./.	6	1	2	0	41	40	41	41	8	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756146584	19	47553744	G	GT	290	PASS	NPAS1	CCDS12694.1	r.?	-	-	Ins	downstream	I	47553744	47553747	1	14	375.728	-	-	2	1	1	NPAS1|CCDS12694.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TMEM160|CCDS12695.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	17	16	17	0	0	./.	1	6	4	8	26	34	26	35	4	8	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756149345	19	53719645	TAAC	T	449	PASS	ZNF818P	ENST00000344759	r.?	-	-	Del	downstream	D	53719645	53719652	3	24	434.22	-	-	2	1	1	ZNF818P|ENST00000344759|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ZNF818P|ENST00000344759|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	17	6	17	6	0	0	./.	5	3	6	4	24	20	24	20	6	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756159530	2	25774419	C	CAGG	300	PASS	DTNB	CCDS46237.1	r.?	-	-	Ins	intronic	I	25774419	25774423	3	10	260.111	-	-	1	1	1	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	1	4	1	5	19	23	19	23	1	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756166776	2	47100930	AGGC	A	449	PASS	-	-	-	-	-	Del	-	D	47100930	47100935	3	25	430.627	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	4	4	6	18	21	18	21	4	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756185349	2	113638642	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	113638642	113638662	2	15	321.766	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	5	26	36	26	36	2	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756196092	2	149234576	T	TA	360	PASS	MBD5	CCDS33302.1	r.?	-	-	Ins	intronic	I	149234576	149234585	1	16	319.358	-	-	8	1	1	MBD5|CCDS33302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBD5|CCDS33302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	9	11	0	0	./.	3	3	3	3	23	23	23	23	3	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756198745	2	158083087	C	CTTAAAACGTTTGATAGAATTCAAACGTTTCTGGAAGTATTCT	377	PASS	-	-	-	-	-	Ins	-	I	158083087	158083090	42	50	371.044	-	-	0	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	9	4	0	0	10	13	19	17	9	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756207677	2	187609146	G	GA	600	PASS	FAM171B	CCDS33347.1	r.?	-	-	Ins	intronic	I	187609146	187609154	1	36	532.263	-	-	7	1	1	FAM171B|CCDS33347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM171B|CCDS33347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	5	5	8	6	28	29	28	30	8	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756209539	2	193988055	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	193988055	193988065	1	15	318.154	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	2	4	2	15	20	15	20	4	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756220733	2	228313456	GT	G	269	PASS	-	-	-	-	-	Del	-	D	228313456	228313458	1	6	269.142	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	0	5	1	7	20	23	20	23	1	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756241003	20	49364460	TC	T	356	PASS	PARD6B	CCDS33485.1	r.?	-	-	Del	intronic	D	49364460	49364463	1	21	434.549	-	-	2	1	1	PARD6B|CCDS33485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD6B|CCDS33485.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	6	3	7	22	29	22	29	3	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756242909	20	54725502	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	54725502	54725509	2	12	271.969	-	-	3	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	2	3	3	5	28	25	28	25	3	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756245469	21	9450612	AT	A	317	PASS	-	-	-	-	-	Del	-	D	9450612	9450618	1	33	652.912	-	-	5	1	1	-	-	./.	0	0	0	0	21	39	21	39	0	0	./.	2	10	1	3	50	228	50	228	2	10	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756276661	3	10151332	AGGC	A	291	PASS	-	-	-	-	-	Del	-	D	10151332	10151337	3	20	377.492	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	3	4	4	4	17	23	17	23	4	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756277139	3	11657770	G	GT	269	PASS	VGLL4	CCDS2606.1	r.?	-	-	Ins	intronic	I	11657770	11657772	1	12	266.025	-	-	1	1	1	VGLL4|CCDS2606.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VGLL4|CCDS2606.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	3	5	23	28	23	29	3	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756288749	3	50758470	GT	G	420	PASS	DOCK3	CCDS46835.1	r.?	-	-	Del	intronic	D	50758470	50758480	1	8	377.492	-	-	9	1	1	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	15	24	15	0	0	./.	0	7	3	7	30	30	30	30	3	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756291400	3	58723031	TCA	T	300	PASS	C3orf67	CCDS33776.1	r.?	-	-	Del	downstream	D	58723031	58723050	2	12	266.627	-	-	9	1	-	C3orf67|CCDS33776.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C3orf67|ENST00000486145|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	13	24	13	0	0	./.	2	3	2	4	23	19	23	19	2	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756320303	3	156368178	GA	G	300	PASS	-	-	-	-	-	Del	-	D	156368178	156368180	1	6	269.637	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	0	5	1	7	12	26	12	26	1	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756346626	4	40477100	T	TTAA	449	PASS	RBM47	CCDS3460.1	r.?	-	-	Ins	intronic	I	40477100	40477106	3	16	416.808	-	-	1	1	1	RBM47|CCDS3460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RBM47|CCDS3460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	1	7	2	23	19	23	19	7	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756348582	4	46400748	G	GT	420	PASS	GABRA2	ENST00000510861	r.?	-	-	Ins	intronic	I	46400748	46400756	1	20	372.534	-	-	7	1	1	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	27	7	27	0	0	./.	4	3	5	3	23	28	23	28	5	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756349385	4	48834431	TAGTG	T	300	PASS	OCIAD1	CCDS47052.1	r.?	-	-	Del	intronic	D	48834431	48834439	4	10	269.536	-	-	1	1	1	OCIAD1|CCDS47052.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OCIAD1|CCDS47052.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	1	5	1	31	17	31	17	5	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756352688	4	59662550	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	59662550	59662556	1	12	319.831	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	1	6	2	26	14	26	14	6	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756360801	4	85204881	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	85204881	85204891	1	12	262.311	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	9	0	0	./.	2	3	2	3	13	21	13	21	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756364847	4	99695461	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	99695461	99695467	1	12	266.526	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	14	0	0	./.	2	3	2	4	23	20	23	20	2	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756373816	4	129117421	AAG	A	269	PASS	LARP1B	CCDS3738.1	r.?	-	-	Del	intronic	D	129117421	129117425	2	6	252.076	-	-	1	1	-	LARP1B|CCDS3738.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARP1B|CCDS3738.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	5	0	5	0	34	18	34	18	6	0	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756374745	4	132264346	TCTC	T	538	PASS	-	-	-	-	-	Del	-	D	132264346	132264352	3	35	539.072	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	6	4	7	28	24	28	24	4	7	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756375066	4	132974981	TA	T	480	PASS	-	-	-	-	-	Del	-	D	132974981	132974987	1	24	431.258	-	-	5	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	5	3	6	4	21	24	21	24	6	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756415622	5	67444881	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	67444881	67444890	1	12	265.132	-	-	8	1	1	-	-	./.	0	0	0	0	22	11	23	11	0	0	./.	2	3	3	4	21	31	21	31	3	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756416557	5	71469088	C	CT	480	PASS	MAP1B	CCDS4012.1	r.?	-	-	Ins	intronic	I	71469088	71469091	1	21	427.101	-	-	2	1	1	MAP1B|CCDS4012.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAP1B|CCDS4012.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	15	26	16	0	0	./.	6	2	7	3	26	22	26	22	7	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756433185	5	130593920	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	130593920	130593930	1	15	318.52	-	-	9	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	2	4	3	5	21	30	21	30	3	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756439216	5	152324603	TA	T	267	PASS	-	-	-	-	-	Del	-	D	152324603	152324613	1	12	323.336	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	5	1	5	28	23	28	23	1	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756449090	6	1827515	A	ATGTATATACACACGTTTTAGAAAACCTGTATATACACACGTTTTGGAAAACC	262	PASS	GMDS	CCDS4474.1	r.?	-	-	Ins	intronic	I	1827515	1827529	52	12	136.05	-	-	0	1	1	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	5	1	0	0	15	21	19	22	5	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756497158	6	155983122	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	155983122	155983131	1	14	373.66	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	1	6	1	6	19	28	20	28	1	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756498035	6	158703286	CT	C	300	PASS	-	-	-	-	-	Del	-	D	158703286	158703288	1	12	269.308	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	4	25	24	25	24	3	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756498895	6	161162650	GTC	G	269	PASS	PLG	CCDS5279.1	r.?	-	-	Del	intronic	D	161162650	161162668	2	12	268.104	-	-	8	1	1	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	2	3	2	3	24	26	24	26	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756500296	6	165133723	GAAAC	G	360	PASS	-	-	-	-	-	Del	-	D	165133723	165133733	4	15	323.892	-	-	2	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	4	2	6	18	32	18	32	2	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756517018	7	47059494	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	47059494	47059512	2	12	269.324	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	3	2	20	18	20	18	3	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756524777	7	68668984	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	68668984	68668993	1	25	422.248	-	-	8	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	4	4	4	4	21	17	21	17	4	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756528178	7	77588330	TTTCAAG	T	261	PASS	PHTF2	CCDS47622.1	r.?	-	-	Del	downstream	D	77588330	77588337	6	30	485.866	-	-	1	1	1	PHTF2|CCDS47622.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PHTF2|CCDS47622.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	11	12	11	0	0	./.	4	5	6	5	26	21	26	21	6	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756540906	7	121188698	TGACAA	T	358	PASS	-	-	-	-	-	Del	-	D	121188698	121188707	5	14	377.294	-	-	1	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	1	6	3	6	25	25	25	25	3	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756563945	8	29411547	G	GT	557	PASS	-	-	-	-	-	Ins	-	I	29411547	29411554	1	35	534.668	-	-	6	1	1	-	-	./.	0	0	0	0	11	12	12	12	0	0	./.	4	6	6	6	22	34	22	34	6	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756563956	8	29452489	CATA	C	327	PASS	-	-	-	-	-	Del	-	D	29452489	29452497	3	20	373.665	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	4	4	17	23	17	23	4	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756570011	8	53854107	CTG	C	300	PASS	NPBWR1	CCDS6151.1	r.?	-	-	Del	downstream	D	53854107	53854126	2	10	270.344	-	-	9	1	-	NPBWR1|CCDS6151.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	NPBWR1|CCDS6151.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	12	14	12	14	0	0	./.	4	1	4	1	22	35	22	35	4	1	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756581797	8	96170575	GA	G	360	PASS	PLEKHF2	CCDS6267.1	r.?	-	-	Del	downstream	D	96170575	96170579	1	16	324.413	-	-	3	1	1	PLEKHF2|CCDS6267.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PLEKHF2|CCDS6267.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	20	10	20	10	0	0	./.	3	3	5	3	25	27	25	27	5	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756586635	8	113082026	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	113082026	113082035	1	10	266.732	-	-	8	1	1	-	-	./.	0	0	0	0	10	31	10	31	0	0	./.	1	4	2	5	22	26	23	26	2	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756604483	9	26239577	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	26239577	26239582	1	12	267.634	-	-	4	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	3	2	3	2	28	21	28	21	3	2	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756605126	9	28542271	G	GA	300	PASS	LINGO2	CCDS6524.1	r.?	-	-	Ins	intronic	I	28542271	28542281	1	12	264.021	-	-	9	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	23	21	23	0	0	./.	2	3	2	3	29	25	29	25	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756615876	9	82012735	GC	G	300	PASS	-	-	-	-	-	Del	-	D	82012735	82012740	1	10	269.44	-	-	4	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	1	4	2	5	13	21	13	21	2	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756620387	9	97497361	GA	G	300	PASS	MIR24-1	CCDS6713.1	r.?	-	-	Del	intronic	D	97497361	97497365	1	12	270.644	-	-	3	1	1	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	2	3	2	3	27	23	27	23	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756645031	X	46576240	TA	T	360	PASS	SLC9A7	CCDS14269.1	r.?	-	-	Del	intronic	D	46576240	46576242	1	16	325.037	-	-	1	1	1	SLC9A7|CCDS14269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A7|CCDS14269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	3	3	4	5	30	28	30	28	4	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756646486	X	53474463	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	53474463	53474464	1	30	471.902	-	-	0	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	4	6	6	28	25	28	26	6	6	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756646952	X	55549812	C	CACACATATATGTATATATATGTATATATATACACATATGTGTGTGT	360	PASS	-	-	-	-	-	Ins	-	I	55549812	55549823	46	15	158.869	-	-	0	1	-	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	4	0	0	24	21	24	21	2	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756648614	X	68187748	C	CAT	300	PASS	-	-	-	-	-	Ins	-	I	68187748	68187758	2	12	264.844	-	-	4	1	-	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	2	3	27	23	27	23	2	3	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756653875	X	89736535	A	AT	258	PASS	-	-	-	-	-	Ins	-	I	89736535	89736544	1	12	267.252	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	2	4	4	24	25	24	25	4	4	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756660340	X	119360500	TC	T	420	PASS	-	-	-	-	-	Del	-	D	119360500	119360503	1	18	379.21	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	5	3	5	14	26	14	26	3	5	1	1	1	1	1	1	1	1
2772597	PD8823a	PD8823b	2756661876	X	125594519	C	CT	309	PASS	-	-	-	-	-	Ins	-	I	125594519	125594521	1	15	319.619	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	14	7	0	0	./.	2	4	3	5	20	21	20	21	3	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776261286	1	43060021	CA	C	360	PASS	CCDC30	CCDS30690.1	r.?	-	-	Del	intronic	D	43060021	43060026	1	16	321.208	-	-	4	1	1	CCDC30|CCDS30690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC30|CCDS30690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	3	3	3	3	26	18	26	18	3	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776277438	1	93887571	G	GA	418	PASS	-	-	-	-	-	Ins	-	I	93887571	93887580	1	25	422.658	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	4	5	5	24	26	24	26	5	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776280557	1	103776254	CAA	C	449	PASS	-	-	-	-	-	Del	-	D	103776254	103776257	2	24	429.882	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	3	6	3	28	18	28	18	6	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776291956	1	154255919	CG	C	600	PASS	-	-	-	-	-	Del	-	D	154255919	154255923	1	20	528.322	-	-	3	1	1	-	-	./.	0	0	0	0	20	31	20	31	0	0	./.	1	9	3	9	11	33	11	33	3	10	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776293844	1	158757898	AT	A	1440	PASS	-	-	-	-	-	Del	-	D	158757898	158757900	1	133	1289.65	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	6	18	10	24	33	44	33	44	10	24	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776298812	1	172447728	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	172447728	172447748	2	12	268.676	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	2	4	31	27	31	27	2	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776311392	1	206990423	G	GA	300	PASS	IL19	CCDS1468.1	r.?	-	-	Ins	intronic	I	206990423	206990433	1	12	263.258	-	-	9	1	1	IL19|CCDS1468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL19|CCDS1468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	16	12	0	0	./.	2	3	2	3	32	37	32	37	2	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776313405	1	212510999	ACTTTCATTGCTTTG	A	406	PASS	PPP2R5A	CCDS1503.1	r.?	-	-	Del	intronic	D	212510999	212511014	14	39	751.692	-	-	1	1	1	PPP2R5A|CCDS1503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R5A|CCDS1503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	2	12	2	12	19	30	19	30	2	12	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776314767	1	216291687	T	TTCTAACTAGAGACACCTTGAATACC	319	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	216291687	216291714	25	40	425.522	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	7	4	1	1	23	23	30	26	8	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776321121	1	233861791	GA	G	960	PASS	-	-	-	-	-	Del	-	D	233861791	233861801	1	45	859.163	-	-	9	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	14	2	18	4	38	18	38	18	18	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776331328	10	8111432	TCA	T	660	PASS	GATA3	CCDS31143.1	r.1493-3_1493-2delca	c.925-3_925-2delca	p.?	Del	ess splice	D	8111432	8111435	2	42	591.211	-	-	1	1	1	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	15	26	15	26	0	0	./.	6	5	9	6	28	19	28	19	9	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776365326	10	106354252	CAG	C	540	PASS	-	-	-	-	-	Del	-	D	106354252	106354255	2	30	483.992	-	-	1	1	1	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	4	5	4	7	20	28	20	28	4	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776365463	10	107031383	CT	C	300	PASS	-	-	-	-	-	Del	-	D	107031383	107031386	1	12	269.553	-	-	2	1	1	-	-	./.	0	0	0	0	20	7	20	7	0	0	./.	2	3	3	3	27	22	27	22	3	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776366515	10	110012080	GTTATT	G	269	PASS	-	-	-	-	-	Del	-	D	110012080	110012088	5	10	269.553	-	-	1	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	1	4	1	6	20	31	20	31	1	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776372344	10	126720527	C	CT	389	PASS	CTBP2	CCDS7644.1	r.?	-	-	Ins	upstream	I	126720527	126720529	1	20	372.558	-	-	1	1	1	CTBP2|CCDS7644.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CTBP2|CCDS7643.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	11	8	0	0	./.	3	4	4	4	22	21	22	21	4	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776374335	10	132326735	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	132326735	132326736	1	12	311.423	-	-	0	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	1	5	0	2	11	23	11	23	1	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776374763	10	133976203	G	GA	480	PASS	JAKMIP3	CCDS44494.1	r.?	-	-	Ins	intronic	I	133976203	133976208	1	25	426.469	-	-	4	1	1	JAKMIP3|CCDS44494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JAKMIP3|CCDS44494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	4	5	5	30	19	31	19	5	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776392885	11	50236606	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	50236606	50236608	1	15	320.597	-	-	1	1	1	-	-	./.	0	0	0	0	17	26	17	26	0	0	./.	4	2	5	4	20	17	20	17	5	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776405957	11	94714818	CTT	C	360	PASS	KDM4D	CCDS8302.1	r.?	-	-	Del	intronic	D	94714818	94714823	2	15	324.209	-	-	4	1	1	KDM4D|CCDS8302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KDM4D|CCDS8302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	2	4	2	9	20	33	20	33	2	9	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776417424	11	128370255	TTTGAAAGGAAATTCTCTCTCAACTTTCTTATTTATTTATACATTATATAAATACATTTTTAAACCAAAAAAGGACCGTTTTTCCAATGGGAAAAAGTCTTGTTTGAGATG	T	464	PASS	ETS1	CCDS8475.1	r.?	-	-	Del	intronic	D	128370255	128370366	110	77	862.15	-	-	1	1	1	ETS1|CCDS8475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ETS1|CCDS8475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	10	6	0	0	17	10	27	16	10	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776440074	12	60885748	AAT	A	480	PASS	-	-	-	-	-	Del	-	D	60885748	60885752	2	25	431.719	-	-	1	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	4	4	4	7	15	28	15	28	4	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776441263	12	64453382	T	TA	300	PASS	SRGAP1	CCDS8967.1	r.?	-	-	Ins	intronic	I	64453382	64453392	1	12	267.19	-	-	9	1	1	SRGAP1|CCDS8967.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRGAP1|CCDS8967.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	2	3	3	5	18	30	18	30	3	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776444335	12	73974426	T	TA	358	PASS	-	-	-	-	-	Ins	-	I	73974426	73974435	1	18	374.066	-	-	8	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	2	5	5	6	25	29	25	29	5	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776463874	12	131726577	GCATT	G	449	PASS	-	-	-	-	-	Del	-	D	131726577	131726584	4	25	429.913	-	-	1	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	4	4	5	6	23	28	23	28	5	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776470737	13	32445368	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	32445368	32445370	1	10	265.246	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	1	4	13	27	13	27	1	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776484243	13	70068509	CA	C	660	PASS	-	-	-	-	-	Del	-	D	70068509	70068516	1	42	594.258	-	-	6	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	6	5	7	6	29	19	29	19	7	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776487102	13	77721126	GAA	G	480	PASS	MYCBP2	CCDS31994.1	r.?	-	-	Del	intronic	D	77721126	77721129	2	21	433.063	-	-	2	1	1	MYCBP2|CCDS31994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYCBP2|CCDS31994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	2	7	4	23	19	23	19	7	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776492313	13	93659153	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	93659153	93659161	1	18	374.716	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	5	2	6	25	22	25	22	2	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776506965	14	37596769	TACTA	T	660	PASS	SLC25A21	CCDS9663.1	r.?	-	-	Del	intronic	D	37596769	37596777	4	36	596.005	-	-	1	1	1	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	8	3	8	6	30	28	30	28	8	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776508721	14	42460676	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	42460676	42460683	1	12	321.481	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	5	2	5	16	33	16	33	2	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776512582	14	53809296	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	53809296	53809302	1	15	321.481	-	-	5	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	4	2	27	19	27	19	4	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776522586	14	80097598	G	GA	540	PASS	NRXN3	CCDS45145.1	r.?	-	-	Ins	intronic	I	80097598	80097602	1	28	481.62	-	-	3	1	1	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	6	3	11	5	33	31	33	31	11	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776531756	14	105981126	TTA	T	300	PASS	-	-	-	-	-	Del	-	D	105981126	105981142	2	10	270.911	-	-	7	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	4	1	42	33	42	33	4	1	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776535327	15	26085743	T	TA	420	PASS	ATP10A	CCDS32178.1	r.?	-	-	Ins	intronic	I	26085743	26085753	1	20	366.857	-	-	9	1	1	ATP10A|CCDS32178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP10A|CCDS32178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	3	4	6	5	21	36	21	36	6	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776545053	15	53702135	T	TC	600	PASS	-	-	-	-	-	Ins	-	I	53702135	53702140	1	35	533.715	-	-	4	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	4	6	4	18	15	18	15	6	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776545567	15	55020428	A	AG	397	PASS	-	-	-	-	-	Ins	-	I	55020428	55020431	1	14	374.684	-	-	2	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	1	6	3	8	27	31	28	31	3	8	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776545924	15	55959418	A	AC	300	PASS	PRTG	CCDS42040.1	r.?	-	-	Ins	intronic	I	55959418	55959419	1	12	259.633	-	-	0	1	1	PRTG|CCDS42040.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRTG|CCDS42040.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	15	17	0	0	./.	2	3	2	3	16	27	18	27	2	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776555292	15	80403360	GA	G	780	PASS	ZFAND6	CCDS10313.1	r.?	-	-	Del	intronic	D	80403360	80403365	1	54	704.787	-	-	4	1	1	ZFAND6|CCDS10313.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZFAND6|CCDS10313.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	5	8	7	11	20	33	20	33	7	11	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776577149	16	32334750	AAAG	A	492	PASS	-	-	-	-	-	Del	-	D	32334750	32334754	3	17	866.553	-	-	1	1	1	-	-	./.	0	0	0	0	19	32	19	32	0	0	./.	16	0	23	0	89	51	89	51	23	0	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776586018	16	67070577	G	GT	420	PASS	CBFB	CCDS45508.1	r.462_463insu	c.201_202insT	p.P70fs*13	Ins	frameshift	I	67070577	67070584	1	18	374.301	-	-	6	1	1	CBFB|CCDS45508.1|r.462_463insu|c.201_202insT|p.P70fs*13|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	CBFB|CCDS45508.1|r.462_463insu|c.201_202insT|p.P70fs*13|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	15	23	15	23	0	0	./.	2	5	4	7	19	22	20	22	4	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776590528	16	78685739	CT	C	900	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78685739	78685743	1	66	808.179	-	-	3	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	5	10	9	11	22	31	22	31	9	11	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776624539	17	78664411	GGATTT	G	298	PASS	RPTOR	CCDS11773.1	r.?	-	-	Del	intronic	D	78664411	78664417	5	16	325.15	-	-	1	1	1	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	3	3	4	5	24	25	24	25	4	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776631250	18	14224213	GCCCGGCCGCCCATAGTCTGGGAAGTGAGGAGTGCCTCTGCCCGGCCGCCCCATCTGGGATGTGGGGAGTGCCTCTGCCTGGCCGCCCATCATCTGGGAAGTGGGGAGCACCTCTGCCCGGCTGCCCCATCTGGGAAGTGAGGAGTGCCTCTCCCTGGCCACCCCATCTGGGAAGTGGGGAGCGCCTCTGCCCAGCCACCCCGTCTGGGAAGTGAGGAGCGCCTCTGCCCGGCCACCCCGTCTGGGAAGTGGGGAGTGCCTCTGCCCGGCCACCCTGTCTGGGAAGTGAGGAGCACCTCTGCCCAGCTGCCCCGCCTGGGAAGTGGGGAGCACCTCTGC	G	298	PASS	-	-	-	-	-	Del	-	D	14224213	14224554	338	12	321.662	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	17	19	0	0	./.	5	1	0	0	21	21	28	23	5	1	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776642687	18	51245417	GA	G	1080	PASS	-	-	-	-	-	Del	-	D	51245417	51245421	1	100	975.824	-	-	3	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	9	9	15	13	33	34	33	34	15	13	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776648393	18	66738489	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	66738489	66738494	1	25	428.883	-	-	4	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	4	4	5	22	27	22	27	4	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776662371	19	19493510	AC	A	269	PASS	GATAD2A	CCDS12402.2	r.?	-	-	Del	upstream	D	19493510	19493517	1	10	270.499	-	-	6	1	1	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GATAD2A|CCDS12402.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	12	16	12	0	0	./.	1	4	2	5	23	25	23	25	2	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776666583	19	31393405	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	31393405	31393424	2	10	255.448	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	1	4	1	4	24	29	24	29	1	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776668928	19	37018298	TAAG	T	447	PASS	AC092296.3	ENST00000500282	r.?	-	-	Del	intronic	D	37018298	37018304	3	28	487.38	-	-	1	1	1	AC092296.3|ENST00000500282|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC092296.3|ENST00000500282|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	6	3	10	3	36	18	37	18	11	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776683393	2	12547254	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	12547254	12547264	1	10	259.925	-	-	9	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	4	1	4	1	38	31	40	31	4	1	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776686581	2	23940338	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	23940338	23940347	1	12	265.343	-	-	8	1	1	-	-	./.	0	0	0	0	24	18	24	18	0	0	./.	2	3	4	4	22	19	22	21	4	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776710275	2	98286247	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	98286247	98286251	1	10	265.945	-	-	3	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	4	1	4	1	19	13	20	13	4	1	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776710853	2	100251923	TTG	T	300	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100251923	100251941	2	10	268.955	-	-	8	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	1	4	2	32	17	32	17	4	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776723734	2	140888044	AT	A	269	PASS	-	-	-	-	-	Del	-	D	140888044	140888054	1	10	268.955	-	-	9	1	1	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	1	4	2	6	16	19	16	19	2	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776724318	2	142160096	T	TA	509	PASS	LRP1B	CCDS2182.1	r.?	-	-	Ins	intronic	I	142160096	142160106	1	24	476.895	-	-	9	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	11	23	11	0	0	./.	2	7	3	8	17	20	17	21	3	8	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776726416	2	149234699	G	GA	300	PASS	MBD5	CCDS33302.1	r.?	-	-	Ins	intronic	I	149234699	149234709	1	12	264.139	-	-	9	1	1	MBD5|CCDS33302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBD5|CCDS33302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	2	3	2	3	19	24	19	24	2	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776731607	2	166468090	T	TA	389	PASS	CSRNP3	CCDS2225.1	r.?	-	-	Ins	intronic	I	166468090	166468099	1	20	369.915	-	-	8	1	1	CSRNP3|CCDS2225.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSRNP3|CCDS2225.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	10	0	0	./.	3	4	3	7	26	28	26	28	3	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776753901	2	233257332	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	233257332	233257340	1	18	372.323	-	-	7	1	1	-	-	./.	0	0	0	0	8	29	8	30	0	0	./.	2	5	8	7	23	32	23	32	8	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776760810	20	9390687	A	AT	360	PASS	PLCB4	CCDS13104.1	r.?	-	-	Ins	intronic	I	9390687	9390694	1	16	322.34	-	-	6	1	1	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	24	19	24	0	0	./.	3	3	7	7	22	28	23	28	7	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776770091	20	35691385	CA	C	269	PASS	RBL1	CCDS13289.1	r.?	-	-	Del	intronic	D	35691385	35691395	1	12	271.627	-	-	9	1	1	RBL1|CCDS13289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBL1|CCDS13289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	3	2	3	2	32	25	32	25	3	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776777132	20	54854600	TA	T	480	PASS	-	-	-	-	-	Del	-	D	54854600	54854608	1	21	434.001	-	-	7	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	2	6	4	7	18	28	18	28	4	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776779514	20	62374475	T	TG	660	PASS	SLC2A4RG	CCDS13537.1	r.1348_1349insg	c.?	p.?	Ins	3'UTR variant	I	62374475	62374483	1	40	588.548	-	-	7	1	1	SLC2A4RG|CCDS13537.1|r.1348_1349insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SLC2A4RG|CCDS13537.1|r.1348_1349insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	17	16	17	16	0	0	./.	7	4	9	6	35	30	36	30	9	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776794016	21	40030512	GA	G	420	PASS	ERG	CCDS13657.1	r.?	-	-	Del	intronic	D	40030512	40030522	1	20	379.891	-	-	9	1	1	ERG|CCDS13657.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ERG|CCDS13657.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	3	4	5	7	29	28	29	28	5	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776796757	21	47134349	AAC	A	360	PASS	PCBP3	CCDS42974.2	r.?	-	-	Del	intronic	D	47134349	47134367	2	15	325.535	-	-	8	1	1	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	16	24	16	0	0	./.	2	4	2	4	22	28	22	28	2	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776802912	22	30440781	GTTC	G	329	PASS	AC003681.2	ENST00000504478	r.?	-	-	Del	intronic	D	30440781	30440789	3	7	327.432	-	-	2	1	1	AC003681.2|ENST00000504478|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC003681.2|ENST00000504478|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	0	6	0	7	19	27	19	27	0	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776808806	22	45264861	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	45264861	45264863	1	30	485.127	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	5	4	7	5	25	24	25	24	7	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776834882	3	74868623	ATTGT	A	420	PASS	-	-	-	-	-	Del	-	D	74868623	74868642	4	18	376.073	-	-	4	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	5	2	6	3	22	19	22	19	6	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776836333	3	76422465	ATTC	A	329	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76422465	76422471	3	16	323.38	-	-	1	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	3	3	5	3	16	20	16	20	5	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776838697	3	84483632	CT	C	780	PASS	-	-	-	-	-	Del	-	D	84483632	84483639	1	56	700.657	-	-	6	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	6	7	7	9	24	34	24	34	7	9	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776857118	3	145681119	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	145681119	145681128	1	10	265.871	-	-	8	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	1	4	2	5	23	30	23	30	2	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776857730	3	147753276	TTATC	T	329	PASS	-	-	-	-	-	Del	-	D	147753276	147753284	4	12	323.38	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	1	7	1	19	17	19	17	7	1	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776894816	4	62429829	GAA	G	300	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62429829	62429834	2	12	267.537	-	-	4	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	3	2	4	2	27	17	27	17	4	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776899953	4	77518190	TC	T	360	PASS	SHROOM3	CCDS3579.2	r.?	-	-	Del	intronic	D	77518190	77518192	1	15	322.007	-	-	1	1	1	SHROOM3|CCDS3579.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHROOM3|CCDS3579.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	2	6	2	20	15	20	15	6	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776900232	4	78316662	CG	C	420	PASS	-	-	-	-	-	Del	-	D	78316662	78316666	1	18	376.478	-	-	3	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	5	2	5	3	23	29	23	29	5	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776904810	4	92890595	TAA	T	300	PASS	-	-	-	-	-	Del	-	D	92890595	92890598	2	10	269.343	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	5	2	28	16	28	16	5	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776908548	4	106732337	C	CA	269	PASS	GSTCD	CCDS43257.1	r.?	-	-	Ins	intronic	I	106732337	106732345	1	10	266.333	-	-	7	1	1	GSTCD|CCDS43257.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GSTCD|CCDS43257.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	4	1	6	2	14	14	14	14	6	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776926251	4	163150589	GA	G	540	PASS	-	-	-	-	-	Del	-	D	163150589	163150594	1	28	481.807	-	-	4	1	1	-	-	./.	0	0	0	0	16	27	16	27	0	0	./.	6	3	8	3	27	16	27	16	8	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776927004	4	165228080	A	AT	540	PASS	MARCH1	CCDS45732.1	r.?	-	-	Ins	intronic	I	165228080	165228084	1	28	479.399	-	-	3	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	3	7	5	23	22	23	22	7	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776931639	4	178920471	AC	A	314	PASS	-	-	-	-	-	Del	-	D	178920471	178920473	1	17	859.489	-	-	1	1	1	-	-	./.	0	0	0	0	15	2	15	2	0	0	./.	16	0	19	0	41	8	41	8	19	0	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776936475	4	190438383	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	190438383	190438390	1	18	372.866	-	-	6	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	5	2	8	6	36	23	37	23	8	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776941208	5	10098465	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	10098465	10098474	1	32	533.177	-	-	8	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	7	3	8	4	28	27	28	28	8	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776957755	5	59877415	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	59877415	59877417	1	20	373.224	-	-	1	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	3	4	6	6	26	28	28	28	6	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776971012	5	101671363	GATAA	G	420	PASS	-	-	-	-	-	Del	-	D	101671363	101671373	4	8	377.438	-	-	2	1	-	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	7	0	9	3	25	26	25	26	9	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776972372	5	105796054	TCCTTTGTATA	T	406	PASS	-	-	-	-	-	Del	-	D	105796054	105796065	10	64	754.876	-	-	1	1	1	-	-	./.	0	0	0	0	13	26	13	26	0	0	./.	7	7	7	7	23	29	23	29	7	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776978902	5	127091960	TA	T	611	PASS	-	-	-	-	-	Del	-	D	127091960	127091962	1	40	588.903	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	7	4	8	26	29	26	29	4	8	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776981222	5	134284132	G	GT	300	PASS	PCBD2	CCDS43364.1	r.?	-	-	Ins	intronic	I	134284132	134284142	1	12	265.384	-	-	9	1	1	PCBD2|CCDS43364.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCBD2|CCDS43364.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	18	23	0	0	./.	2	3	2	4	23	23	23	23	2	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776988843	5	157759357	AG	A	600	PASS	-	-	-	-	-	Del	-	D	157759357	157759360	1	27	535.585	-	-	2	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	8	2	8	3	37	23	37	23	8	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2776990216	5	161949765	TTGTC	T	480	PASS	-	-	-	-	-	Del	-	D	161949765	161949773	4	24	431.358	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	3	7	6	23	28	23	28	7	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777023593	6	71695303	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	71695303	71695319	2	12	269.709	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	4	2	27	17	27	17	4	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777045003	6	143454352	C	CT	420	PASS	AIG1	CCDS5198.1	r.?	-	-	Ins	intronic	I	143454352	143454361	1	14	373.378	-	-	8	1	1	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	1	6	2	8	15	28	15	29	2	8	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777057781	7	7961458	TA	T	960	PASS	-	-	-	-	-	Del	-	D	7961458	7961462	1	72	861.932	-	-	3	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	11	5	12	6	33	28	33	28	12	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777074558	7	54614251	C	CCCCCGCCTG	290	PASS	VSTM2A	CCDS5512.2	r.?	-	-	Ins	intronic	I	54614251	54614255	9	36	471.653	-	-	0	1	-	VSTM2A|CCDS5512.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VSTM2A|CCDS5512.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	4	17	4	0	0	./.	5	5	0	0	21	23	21	23	5	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777077636	7	63642420	G	GCCGCCGCCGCCGTCT	261	PASS	-	-	-	-	-	Ins	-	I	63642420	63642430	15	30	401.489	-	-	0	1	-	-	-	./.	0	0	0	0	7	13	8	14	0	0	./.	4	5	1	2	28	33	28	36	4	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777102905	7	130810380	AAC	A	423	PASS	MKLN1	ENST00000421797	r.?	-	-	Del	intronic	D	130810380	130810385	2	30	485.175	-	-	2	1	1	MKLN1|ENST00000421797|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MKLN1|ENST00000421797|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	5	4	7	5	28	21	28	21	7	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777108299	7	145606425	C	CA	480	PASS	ENSG00000237800	ENST00000439291	r.?	-	-	Ins	intronic	I	145606425	145606432	1	16	426.45	-	-	6	1	1	ENSG00000237800|ENST00000439291|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000237800|ENST00000439291|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	7	1	7	2	26	14	27	14	8	2	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777128192	8	36368628	GAGA	G	449	PASS	-	-	-	-	-	Del	-	D	36368628	36368637	3	24	431.973	-	-	2	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	5	3	7	4	41	24	41	24	7	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777133725	8	56572398	C	CA	339	PASS	-	-	-	-	-	Ins	-	I	56572398	56572405	1	81	854.313	-	-	6	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	8	8	9	10	29	33	29	33	9	10	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777134003	8	57434220	AT	A	780	PASS	AC012349.1	ENST00000499425	r.?	-	-	Del	intronic	D	57434220	57434224	1	56	701.956	-	-	3	1	1	AC012349.1|ENST00000499425|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC012349.1|ENST00000499425|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	7	6	9	7	29	21	29	21	9	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777134840	8	60305067	GA	G	540	PASS	-	-	-	-	-	Del	-	D	60305067	60305077	1	24	485.367	-	-	9	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	7	2	13	3	36	16	36	16	13	3	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777134894	8	60559303	TGTAA	T	474	PASS	-	-	-	-	-	Del	-	D	60559303	60559312	4	42	593.963	-	-	2	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	5	6	6	8	28	22	28	22	6	8	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777136039	8	64235647	G	GCCTCCCGAGCAGCTGGGATTACAGGCATGCA	261	PASS	-	-	-	-	-	Ins	-	I	64235647	64235654	31	18	317.393	-	-	0	1	1	-	-	./.	0	0	0	0	18	14	18	17	0	0	./.	8	1	0	0	23	20	29	24	8	1	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777147609	8	101286660	T	TA	300	PASS	RNF19A	CCDS6286.1	r.?	-	-	Ins	intronic	I	101286660	101286668	1	12	265.769	-	-	7	1	1	RNF19A|CCDS6286.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF19A|CCDS6286.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	3	4	31	21	32	21	3	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777165037	9	7521083	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	7521083	7521091	1	15	320.986	-	-	7	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	2	4	4	6	15	29	15	29	4	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777187565	9	98232581	TC	T	720	PASS	PTCH1	CCDS47996.1	r.?	-	-	Del	intronic	D	98232581	98232584	1	49	644.981	-	-	2	1	1	PTCH1|CCDS47996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTCH1|CCDS47996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	6	6	8	7	21	24	21	24	8	7	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777194328	9	119740801	C	CAG	269	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119740801	119740809	2	12	262.069	-	-	3	1	-	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	2	18	20	20	20	4	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777202340	X	5139044	TAGAC	T	420	PASS	-	-	-	-	-	Del	-	D	5139044	5139056	4	20	378.984	-	-	2	1	-	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	3	5	4	18	11	18	11	5	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777209617	X	35355051	CA	C	420	PASS	-	-	-	-	-	Del	-	D	35355051	35355060	1	20	378.984	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	6	5	26	20	26	20	6	5	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777216796	X	70893207	TG	T	478	PASS	-	-	-	-	-	Del	-	D	70893207	70893210	1	30	486.062	-	-	2	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	5	4	6	4	24	16	24	16	6	4	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777220114	X	86014250	ATCTC	A	538	PASS	DACH2	CCDS48140.1	r.?	-	-	Del	intronic	D	86014250	86014256	4	35	541.406	-	-	2	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	6	4	6	6	20	22	20	22	6	6	1	1	1	1	1	1	1	1
2822789	PD8826a	PD8826b	2777225701	X	110631831	C	CT	420	PASS	DCX	CCDS14556.1	r.?	-	-	Ins	intronic	I	110631831	110631838	1	20	374.77	-	-	6	1	1	DCX|CCDS14556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCX|CCDS14556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	3	4	3	7	18	25	19	26	3	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687045904	1	42985687	ATAAT	A	509	PASS	CCDC30	ENST00000507855	r.?	-	-	Del	intronic	D	42985687	42985695	4	30	484.129	-	-	1	1	1	CCDC30|ENST00000507855|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC30|ENST00000507855|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	5	4	8	5	25	28	25	28	8	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687055283	1	73170244	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	73170244	73170247	1	20	372.33	-	-	2	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	6	4	23	26	23	26	6	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687062209	1	95087031	G	GCGCT	1018	PASS	-	-	-	-	-	Ins	-	I	95087031	95087036	4	84	921.899	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	11	8	0	0	./.	13	5	13	5	41	25	42	25	13	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687073096	1	145651246	T	TA	300	PASS	RNF115	CCDS922.1	r.?	-	-	Ins	intronic	I	145651246	145651254	1	12	259.327	-	-	7	1	1	RNF115|CCDS922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF115|CCDS922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	18	11	0	0	./.	2	3	2	4	24	25	26	25	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687082525	1	173618893	TA	T	300	PASS	ANKRD45	CCDS1309.1	r.?	-	-	Del	intronic	D	173618893	173618898	1	6	268.96	-	-	4	1	1	ANKRD45|CCDS1309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD45|CCDS1309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	0	5	1	7	9	26	9	26	1	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687086321	1	186491251	GC	G	1200	PASS	-	-	-	-	-	Del	-	D	186491251	186491253	1	117	1075.84	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	8	12	10	17	20	22	20	22	10	17	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687100218	1	228635117	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	228635117	228635124	1	7	319.14	-	-	6	1	1	-	-	./.	0	0	0	0	23	8	23	8	0	0	./.	6	0	10	2	42	16	44	16	10	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687168697	11	41394760	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	41394760	41394768	1	12	267.298	-	-	7	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	2	15	22	15	22	3	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687172773	11	56404124	TG	T	389	PASS	OR5AP2	CCDS31534.1	r.?	-	-	Del	downstream	D	56404124	56404126	1	20	378.431	-	-	1	1	1	OR5AP2|CCDS31534.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR5AP2|CCDS31534.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	14	9	14	0	0	./.	3	4	4	4	25	22	25	22	4	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687186158	11	98287359	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	98287359	98287360	1	6	266.696	-	-	0	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	0	5	0	38	18	38	18	5	0	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687187297	11	101209259	TA	T	480	PASS	-	-	-	-	-	Del	-	D	101209259	101209264	1	25	431.891	-	-	4	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	4	5	7	22	29	22	29	5	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687187875	11	102979966	TAAG	T	509	PASS	DYNC2H1	CCDS44717.1	r.?	-	-	Del	upstream	D	102979966	102979975	3	28	485.953	-	-	2	1	1	DYNC2H1|CCDS44717.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DYNC2H1|CCDS44717.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	14	11	14	0	0	./.	3	6	4	9	26	32	26	32	4	9	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687205694	12	19515384	C	CTTG	627	PASS	PLEKHA5	CCDS44840.1	r.?	-	-	Ins	intronic	I	19515384	19515388	3	48	622.96	-	-	1	1	1	PLEKHA5|CCDS44840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHA5|CCDS44840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	7	5	8	6	29	25	29	25	8	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687206197	12	20658347	AC	A	300	PASS	PDE3A	CCDS31754.1	r.?	-	-	Del	intronic	D	20658347	20658349	1	12	270.354	-	-	1	1	1	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	2	19	17	19	17	4	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687211395	12	37885765	TAA	T	321	PASS	-	-	-	-	-	Del	-	D	37885765	37885769	2	20	378.495	-	-	3	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	3	4	4	7	12	22	12	22	4	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687211998	12	39916416	CT	C	300	PASS	-	-	-	-	-	Del	-	D	39916416	39916418	1	12	270.354	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	2	3	3	3	16	27	16	27	3	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687225656	12	83325924	T	TA	420	PASS	TMTC2	CCDS9025.1	r.?	-	-	Ins	intronic	I	83325924	83325932	1	14	371.873	-	-	7	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	1	6	4	8	33	39	33	40	4	8	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687228896	12	94558640	TA	T	269	PASS	PLXNC1	CCDS9049.1	r.?	-	-	Del	intronic	D	94558640	94558642	1	12	270.354	-	-	1	1	1	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	4	4	21	18	21	18	4	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687229589	12	96139334	TTTGAA	T	418	PASS	NTN4	CCDS9054.1	r.?	-	-	Del	intronic	D	96139334	96139340	5	21	432.566	-	-	1	1	1	NTN4|CCDS9054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTN4|CCDS9054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	6	2	6	3	19	23	19	23	6	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687235708	12	114303643	AG	A	300	PASS	RBM19	CCDS9172.1	r.?	-	-	Del	intronic	D	114303643	114303649	1	10	269.752	-	-	5	1	1	RBM19|CCDS9172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM19|CCDS9172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	4	1	40	18	40	18	4	1	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687239087	12	122655520	GGCT	G	300	PASS	IL31	CCDS31919.1	r.?	-	-	Del	downstream	D	122655520	122655540	3	10	270.354	-	-	6	1	1	IL31|CCDS31919.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IL31|CCDS31919.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	5	1	34	22	34	22	5	1	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687241005	12	127506059	CA	C	300	PASS	AC078878.2	ENST00000512624	r.?	-	-	Del	intronic	D	127506059	127506068	1	10	270.354	-	-	8	1	1	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	1	4	3	5	20	28	20	28	3	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687255854	13	51901324	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	51901324	51901334	1	16	320.362	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	3	3	3	22	16	22	17	3	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687258993	13	62019177	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	62019177	62019180	1	12	266.768	-	-	2	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	4	4	26	25	26	25	4	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687261348	13	69722243	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	69722243	69722245	1	12	321.567	-	-	1	1	-	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	1	7	1	26	6	26	6	7	1	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687263308	13	75495427	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	75495427	75495431	1	24	428.755	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	3	6	4	19	28	19	28	6	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687266644	13	86279041	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	86279041	86279048	1	16	317.352	-	-	6	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	3	6	31	30	31	31	3	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687273785	13	107227952	TATTA	T	987	PASS	-	-	-	-	-	Del	-	D	107227952	107227960	4	96	969.516	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	7	11	6	13	21	42	21	42	7	13	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687273821	13	107381915	AC	A	300	PASS	-	-	-	-	-	Del	-	D	107381915	107381917	1	12	270.982	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	3	2	16	20	16	20	3	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687284933	14	43816915	CTG	C	420	PASS	-	-	-	-	-	Del	-	D	43816915	43816923	2	18	379.697	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	2	5	3	19	13	19	13	5	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687296804	14	78132035	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	78132035	78132045	1	6	268.202	-	-	9	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	0	5	0	7	5	27	6	27	0	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687304963	14	103518974	AAGAC	A	540	PASS	ENSG00000198752	CCDS9978.1	r.?	-	-	Del	intronic	D	103518974	103518979	4	30	486.978	-	-	1	1	1	ENSG00000198752|CCDS9978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000198752|CCDS9978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	5	4	6	21	30	21	30	4	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687308078	15	22894497	AAT	A	360	PASS	CYFIP1	CCDS10009.1	r.?	-	-	Del	intronic	D	22894497	22894501	2	15	325.599	-	-	1	1	1	CYFIP1|CCDS10009.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CYFIP1|CCDS10009.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	4	2	4	17	30	17	30	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687308502	15	23915717	TC	T	420	PASS	-	-	-	-	-	Del	-	D	23915717	23915719	1	20	379.865	-	-	1	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	3	4	4	4	22	25	22	25	4	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687311342	15	32698265	GCA	G	296	PASS	ENSG00000249931	ENST00000512626	r.?	-	-	Del	upstream	D	32698265	32698284	2	16	314.16	-	-	9	1	1	ENSG00000249931|ENST00000512626|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000249931|ENST00000512626|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	17	13	17	0	0	./.	3	3	3	3	39	22	39	22	3	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687324530	15	70010727	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	70010727	70010744	2	12	271.332	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	3	3	35	22	35	22	3	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687325538	15	73311983	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	73311983	73311986	2	6	271.332	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	0	5	0	6	17	27	17	27	0	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687330782	15	89662985	CT	C	420	PASS	ABHD2	CCDS10348.1	r.?	-	-	Del	intronic	D	89662985	89662989	1	20	379.865	-	-	3	1	1	ABHD2|CCDS10348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABHD2|CCDS10348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	4	5	4	28	21	28	21	5	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687335994	16	1798833	C	CT	360	PASS	MAPK8IP3	CCDS10442.2	r.?	-	-	Ins	intronic	I	1798833	1798843	1	15	321.192	-	-	9	1	1	MAPK8IP3|CCDS10442.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAPK8IP3|CCDS10442.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	11	21	11	0	0	./.	2	4	2	4	31	27	32	27	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687336541	16	3321480	CCCCCCACCTCTCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGCTGA	C	263	PASS	AJ003147.2	ENST00000427580	r.?	-	-	Del	downstream	D	3321480	3321532	46	12	268.764	-	-	1	1	1	AJ003147.2|ENST00000427580|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AJ003147.2|ENST00000427580|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	0	0	24	28	26	31	2	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687338774	16	8336655	GA	G	540	PASS	-	-	-	-	-	Del	-	D	8336655	8336663	1	28	485.701	-	-	7	1	1	-	-	./.	0	0	0	0	4	19	4	19	0	0	./.	3	6	4	9	28	36	28	36	4	9	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687365239	17	1745457	G	GT	300	PASS	RPA1	CCDS11014.1	r.?	-	-	Ins	intronic	I	1745457	1745467	1	10	267.76	-	-	9	1	1	RPA1|CCDS11014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPA1|CCDS11014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	1	4	18	31	18	31	1	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687365969	17	3599386	GC	G	780	PASS	P2RX5	CCDS11034.1	r.263delG	c.?	p.?	Del	5'UTR variant	D	3599386	3599390	1	56	703.763	-	-	3	1	1	P2RX5|CCDS11034.1|r.263delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	P2RX5|ENST00000381833|r.122delG|c.25delG|p.A9fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	7	10	7	0	0	./.	6	7	6	8	16	26	16	26	6	8	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687377185	17	36811673	CA	C	509	PASS	-	-	-	-	-	Del	-	D	36811673	36811678	1	30	480.644	-	-	4	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	5	7	7	15	21	15	21	7	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687377551	17	37686327	CTTTAT	C	478	PASS	CDK12	CCDS45666.1	r.?	-	-	Del	intronic	D	37686327	37686338	5	30	488.471	-	-	2	1	1	CDK12|CCDS45666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDK12|CCDS45666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	4	6	4	20	21	20	21	6	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687377663	17	38179594	C	CT	420	PASS	MED24	CCDS11359.1	r.2533_2534insa	c.2039_2040insA	p.T681fs*53	Ins	frameshift	I	38179594	38179596	1	14	374.503	-	-	1	1	1	MED24|CCDS11359.1|r.2533_2534insa|c.2039_2040insA|p.T681fs*53|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MED24|CCDS11359.1|r.2533_2534insa|c.2039_2040insA|p.T681fs*53|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	11	8	11	8	0	0	./.	6	1	8	3	16	19	16	19	8	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687402717	18	30597879	G	GA	300	PASS	C18orf34	CCDS42424.1	r.?	-	-	Ins	intronic	I	30597879	30597889	1	12	268.319	-	-	9	1	1	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	4	21	16	21	16	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687405343	18	40550866	TG	T	337	PASS	RIT2	CCDS11921.1	r.?	-	-	Del	intronic	D	40550866	40550868	1	16	325.595	-	-	1	1	1	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	3	5	4	20	18	20	18	5	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687445465	2	4952244	TG	T	360	PASS	-	-	-	-	-	Del	-	D	4952244	4952246	1	15	322.932	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	4	3	4	18	20	18	20	3	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687461724	2	55483019	TC	T	269	PASS	MTIF2	CCDS1853.1	r.?	-	-	Del	intronic	D	55483019	55483021	1	12	265.498	-	-	1	1	1	MTIF2|CCDS1853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTIF2|CCDS1853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	2	3	23	23	23	23	2	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687465525	2	68356949	GTTAAC	G	296	PASS	WDR92	CCDS1884.1	r.2607_2611delGUUAA	c.?	p.?	Del	3'UTR variant	D	68356949	68356957	5	20	376.754	-	-	1	1	1	WDR92|CCDS1884.1|r.2607_2611delGUUAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	WDR92|CCDS1884.1|r.2607_2611delGUUAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	3	5	21	20	21	20	3	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687469585	2	82928551	AAT	A	569	PASS	-	-	-	-	-	Del	-	D	82928551	82928556	2	32	537.016	-	-	2	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	7	3	7	5	22	27	22	27	7	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687499388	2	180341188	TA	T	660	PASS	ZNF385B	CCDS33339.1	r.?	-	-	Del	intronic	D	180341188	180341192	1	40	592.042	-	-	3	1	1	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	7	4	8	5	30	23	30	23	8	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687502884	2	192265036	G	GT	300	PASS	MYO1B	CCDS46477.1	r.?	-	-	Ins	intronic	I	192265036	192265046	1	12	266.1	-	-	9	1	1	MYO1B|CCDS46477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO1B|CCDS46477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	3	2	34	29	34	29	3	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687511326	2	217575997	AGT	A	269	PASS	-	-	-	-	-	Del	-	D	217575997	217576016	2	12	269.11	-	-	9	1	-	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	2	31	28	31	28	3	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687539680	20	56499625	GTC	G	600	PASS	-	-	-	-	-	Del	-	D	56499625	56499629	2	35	543.662	-	-	1	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	6	4	7	5	25	25	25	25	7	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687560658	22	20789992	TCTC	T	540	PASS	SCARF2	CCDS46666.1	r.?	-	-	Del	intronic	D	20789992	20789999	3	30	490.745	-	-	2	1	1	SCARF2|CCDS46666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCARF2|CCDS46666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	4	6	7	24	33	24	33	6	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687586633	3	45036352	T	TGG	298	PASS	EXOSC7	CCDS2725.1	r.?	-	-	Ins	intronic	I	45036352	45036354	2	16	310.92	-	-	1	1	-	EXOSC7|CCDS2725.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EXOSC7|CCDS2725.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	7	9	0	0	./.	3	3	3	4	12	27	13	27	3	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687602806	3	96947383	GTA	G	300	PASS	EPHA6	CCDS46876.1	r.?	-	-	Del	intronic	D	96947383	96947402	2	12	261.809	-	-	9	1	-	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	2	3	2	3	20	22	20	22	2	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687603015	3	98126467	G	GA	341	PASS	-	-	-	-	-	Ins	-	I	98126467	98126474	1	21	426.601	-	-	6	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	6	2	6	6	33	19	33	19	6	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687605670	3	106983322	GAGGTCAGAAATCTTGGGTATGGATGCATCTTTAATTACATCTGCAAAATTCCTTCAAAGAAGTACTTGGATTTGTATTCGAATGAATAAGCAGA	G	360	PASS	-	-	-	-	-	Del	-	D	106983322	106983417	94	15	322.961	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	2	0	0	25	26	29	28	4	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687612019	3	127021302	TC	T	360	PASS	-	-	-	-	-	Del	-	D	127021302	127021304	1	15	317.542	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	4	3	28	29	28	29	4	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687641172	4	20226002	TG	T	300	PASS	-	-	-	-	-	Del	-	D	20226002	20226006	1	10	269.479	-	-	3	1	1	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	4	1	5	1	24	24	24	24	5	1	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687641436	4	21038658	G	GA	300	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Ins	intronic	I	21038658	21038668	1	12	265.867	-	-	9	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	4	3	26	20	26	20	4	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687645737	4	34458343	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	34458343	34458350	1	24	426.35	-	-	6	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	3	6	5	46	25	47	26	6	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687654687	4	60606317	CTA	C	300	PASS	-	-	-	-	-	Del	-	D	60606317	60606329	2	10	268.877	-	-	5	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	1	4	2	5	16	23	16	23	2	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687667931	4	104651430	AG	A	360	PASS	-	-	-	-	-	Del	-	D	104651430	104651432	1	15	323.375	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	6	4	29	24	29	24	6	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687682234	4	151266548	TG	T	480	PASS	LRBA	CCDS3773.1	r.?	-	-	Del	intronic	D	151266548	151266551	1	24	431.166	-	-	2	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	5	4	5	22	21	22	21	4	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687702120	5	12104203	AC	A	300	PASS	-	-	-	-	-	Del	-	D	12104203	12104208	1	12	268.111	-	-	4	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	3	5	5	21	28	21	28	5	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687706191	5	24082897	CTGTT	C	356	PASS	-	-	-	-	-	Del	-	D	24082897	24082905	4	25	418.02	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	4	4	5	6	24	27	24	27	5	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687713496	5	46166406	TC	T	480	PASS	-	-	-	-	-	Del	-	D	46166406	46166408	1	21	431.868	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	2	6	4	9	15	21	15	21	4	9	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687715131	5	54072816	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	54072816	54072836	2	12	269.917	-	-	9	1	-	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	2	3	17	16	17	16	2	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687716903	5	59652096	GC	G	600	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59652096	59652098	1	36	539.834	-	-	1	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	5	5	7	5	25	21	25	21	7	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687718948	5	66271372	GA	G	300	PASS	MAST4	CCDS47225.1	r.?	-	-	Del	intronic	D	66271372	66271374	1	10	266.907	-	-	1	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	1	4	1	4	18	24	18	24	1	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687719366	5	67848170	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	67848170	67848178	1	12	266.907	-	-	7	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	2	3	2	4	14	16	14	16	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687748738	5	169145426	A	AT	300	PASS	DOCK2	CCDS4371.1	r.?	-	-	Ins	intronic	I	169145426	169145436	1	10	266.907	-	-	9	1	1	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	1	4	1	5	23	35	23	37	1	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687767377	6	34662271	CTT	C	420	PASS	C6orf106	CCDS4796.1	r.?	-	-	Del	intronic	D	34662271	34662276	2	20	377.731	-	-	4	1	1	C6orf106|CCDS4796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf106|CCDS4796.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	4	3	4	3	24	20	24	20	4	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687781260	6	76842856	GC	G	540	PASS	-	-	-	-	-	Del	-	D	76842856	76842858	1	30	485.655	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	4	6	5	19	23	19	23	6	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687783042	6	82346317	GT	G	300	PASS	FAM46A	ENST00000412306	r.?	-	-	Del	intronic	D	82346317	82346319	1	12	269.808	-	-	1	1	1	FAM46A|ENST00000412306|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM46A|ENST00000412306|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	6	19	24	19	24	3	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687788597	6	100628209	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	100628209	100628219	1	12	264.39	-	-	9	1	1	-	-	./.	0	0	0	0	17	9	18	9	0	0	./.	3	2	4	2	23	21	24	22	4	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687800963	6	141483943	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	141483943	141483960	2	10	269.808	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	1	4	25	25	25	25	1	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687801949	6	145351106	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	145351106	145351116	1	6	261.981	-	-	9	1	-	-	-	./.	0	0	0	0	13	15	14	15	0	0	./.	0	5	0	5	19	22	19	22	0	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687828787	7	50627129	T	TC	300	PASS	DDC	CCDS5511.1	r.?	-	-	Ins	intronic	I	50627129	50627130	1	6	266.811	-	-	0	1	1	DDC|CCDS5511.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DDC|CCDS5511.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	16	0	0	./.	5	0	5	1	38	33	38	34	5	1	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687830470	7	55051074	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	55051074	55051084	1	10	266.209	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	1	4	31	34	33	34	1	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687861960	7	147964991	TC	T	600	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147964991	147964994	1	35	533.622	-	-	2	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	6	4	7	6	36	31	36	31	7	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687869128	8	6912777	G	GA	420	PASS	DEFA5	CCDS5963.1	r.?	-	-	Ins	downstream	I	6912777	6912786	1	14	372.427	-	-	8	1	1	DEFA5|CCDS5963.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	DEFA5|CCDS5963.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	14	17	14	17	0	0	./.	6	1	7	8	40	37	40	37	7	8	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687882929	8	51395922	A	AT	269	PASS	SNTG1	CCDS6147.1	r.?	-	-	Ins	intronic	I	51395922	51395929	1	12	267.309	-	-	6	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	2	4	31	21	31	21	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687907377	8	137587605	TG	T	300	PASS	-	-	-	-	-	Del	-	D	137587605	137587607	1	10	269.116	-	-	1	1	1	-	-	./.	0	0	0	0	6	24	6	24	0	0	./.	1	4	1	7	16	28	16	28	1	7	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687914195	9	12550129	ATAAG	A	420	PASS	-	-	-	-	-	Del	-	D	12550129	12550136	4	20	378.24	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	3	5	3	14	22	14	22	5	3	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687931566	9	86370517	CA	C	420	PASS	GKAP1	CCDS35049.1	r.?	-	-	Del	intronic	D	86370517	86370526	1	18	378.24	-	-	8	1	1	GKAP1|CCDS35049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GKAP1|CCDS35049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	5	2	10	2	32	9	32	9	10	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687945907	9	130974212	CTG	C	540	PASS	DNM1	CCDS43882.1	r.?	-	-	Del	intronic	D	130974212	130974218	2	24	486.481	-	-	2	1	1	DNM1|CCDS43882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM1|CCDS43882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	12	23	12	0	0	./.	7	2	7	5	31	23	31	23	7	5	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687948677	9	137268473	T	TCTCAGAGAACCAGTGAGACCTGTGCCGCGTCCTCTGTCTATAGAAGGTGATGCTTAGGGAGCA	290	PASS	RXRA	CCDS35172.1	r.?	-	-	Ins	intronic	I	137268473	137268499	63	35	156.487	-	-	0	1	1	RXRA|CCDS35172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RXRA|CCDS35172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	6	4	0	0	29	24	36	28	6	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687949450	9	139886740	C	CA	360	PASS	CLIC3	CCDS7021.1	r.?	-	-	Ins	downstream	I	139886740	139886743	1	15	314.487	-	-	2	1	1	CLIC3|CCDS7021.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C9orf142|CCDS7020.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	8	13	8	14	0	0	./.	4	2	6	2	19	25	19	25	6	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687954227	X	19180025	AAAAC	A	449	PASS	-	-	-	-	-	Del	-	D	19180025	19180049	4	21	430.903	-	-	5	1	-	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	6	2	6	2	23	28	23	28	6	2	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687964361	X	67637101	A	AT	360	PASS	OPHN1	CCDS14388.1	r.?	-	-	Ins	intronic	I	67637101	67637107	1	15	320.769	-	-	5	1	1	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	4	2	4	21	18	22	18	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687967710	X	83230560	GT	G	420	PASS	-	-	-	-	-	Del	-	D	83230560	83230564	1	20	379.147	-	-	3	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	4	6	24	29	24	29	4	6	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687974219	X	113001281	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	113001281	113001291	1	10	258.176	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	1	4	1	4	25	35	25	35	1	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687980753	X	140426603	TAC	T	276	PASS	-	-	-	-	-	Del	-	D	140426603	140426621	2	12	270.819	-	-	8	1	-	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	2	4	28	25	28	25	2	4	1	1	1	1	1	1	1	1
2626878	PD9066a	PD9066b	2687982506	X	147203052	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	147203052	147203060	1	40	589.18	-	-	7	1	1	-	-	./.	0	0	0	0	10	14	10	15	0	0	./.	4	7	5	10	21	43	21	43	5	10	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662196944	1	40317924	G	GTTCA	296	PASS	TRIT1	CCDS30681.1	r.?	-	-	Ins	intronic	I	40317924	40317933	4	20	359.202	-	-	2	1	1	TRIT1|CCDS30681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIT1|CCDS30681.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	6	5	28	22	29	22	6	5	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662224109	1	118084531	ACTC	A	420	PASS	-	-	-	-	-	Del	-	D	118084531	118084540	3	20	375.458	-	-	2	1	1	-	-	./.	0	0	0	0	4	12	4	12	0	0	./.	4	3	4	3	25	26	25	26	4	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662236632	1	169123119	T	TA	300	PASS	NME7	CCDS1277.1	r.?	-	-	Ins	intronic	I	169123119	169123121	1	6	258.981	-	-	1	1	1	NME7|CCDS1277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NME7|CCDS1277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	0	5	0	5	14	29	14	29	0	5	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662244985	1	194567645	C	CGT	360	PASS	-	-	-	-	-	Ins	-	I	194567645	194567656	2	12	315.112	-	-	5	1	1	-	-	./.	0	0	0	0	3	13	3	13	0	0	./.	1	5	4	6	19	20	19	20	4	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662268366	10	6148739	G	GT	300	PASS	RBM17	CCDS7077.1	r.?	-	-	Ins	intronic	I	6148739	6148749	1	6	259.986	-	-	9	1	1	RBM17|CCDS7077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM17|CCDS7077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	5	0	5	0	26	28	27	28	5	0	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662274387	10	20008842	TTC	T	300	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	20008842	20008858	2	12	269.619	-	-	7	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	2	3	2	26	23	26	23	3	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662293639	10	73685888	T	TG	269	PASS	-	-	-	-	-	Ins	-	I	73685888	73685889	1	12	249.149	-	-	0	1	-	-	-	./.	0	0	0	0	5	13	5	14	0	0	./.	3	2	0	0	16	23	16	24	3	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662305575	10	108119666	ATAT	A	300	PASS	-	-	-	-	-	Del	-	D	108119666	108119690	3	10	269.619	-	-	7	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	1	4	1	23	25	23	25	4	1	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662323594	11	22190631	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	22190631	22190639	1	12	320.385	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	1	5	3	5	19	24	20	24	3	5	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662323826	11	22776154	CT	C	300	PASS	GAS2	CCDS7858.1	r.?	-	-	Del	intronic	D	22776154	22776164	1	10	267.589	-	-	9	1	1	GAS2|CCDS7858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS2|CCDS7858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	1	4	2	5	36	26	36	26	2	5	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662326471	11	30070390	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	30070390	30070399	1	14	373.782	-	-	8	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	1	6	3	6	27	19	27	19	3	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662329248	11	37725667	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	37725667	37725675	1	12	266.987	-	-	7	1	1	-	-	./.	0	0	0	0	13	19	13	20	0	0	./.	2	3	4	4	26	32	26	33	4	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662354466	11	109880404	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	109880404	109880411	1	10	266.987	-	-	6	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	1	5	1	23	22	23	22	5	1	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662377330	12	38812289	TA	T	360	PASS	-	-	-	-	-	Del	-	D	38812289	38812298	1	15	323.993	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	4	2	4	19	22	19	22	2	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662388744	12	70338798	G	GA	300	PASS	C12orf28	ENST00000299350	r.?	-	-	Ins	intronic	I	70338798	70338807	1	10	266.984	-	-	8	1	1	C12orf28|ENST00000299350|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf28|ENST00000299350|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	1	5	1	30	20	30	20	5	1	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662396503	12	95464995	A	AT	389	PASS	NR2C1	CCDS9051.1	r.?	-	-	Ins	intronic	I	95464995	95465000	1	20	342.47	-	-	4	1	1	NR2C1|CCDS9051.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NR2C1|CCDS9051.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	4	3	3	4	29	27	30	27	4	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662401676	12	109701674	ATAG	A	358	PASS	ACACB	CCDS31898.1	r.?	-	-	Del	intronic	D	109701674	109701680	3	20	377.992	-	-	1	1	1	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	4	4	4	35	23	35	23	4	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662403464	12	114154325	ATTTTCTTTTTTTTT	A	290	PASS	-	-	-	-	-	Del	-	D	114154325	114154344	14	32	539.386	-	-	1	1	-	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	3	7	3	7	19	25	19	25	3	7	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662431203	13	67454071	G	GA	300	PASS	PCDH9	CCDS9443.1	r.?	-	-	Ins	intronic	I	67454071	67454081	1	12	267.08	-	-	9	1	1	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	3	2	17	28	18	28	3	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662444067	13	103664039	CT	C	420	PASS	-	-	-	-	-	Del	-	D	103664039	103664049	1	14	378.969	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	6	1	6	24	30	24	30	1	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662457474	14	44455228	A	AAT	300	PASS	-	-	-	-	-	Ins	-	I	44455228	44455229	2	12	264.915	-	-	0	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	2	3	0	0	25	19	25	20	2	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662487867	15	37802845	AT	A	269	PASS	-	-	-	-	-	Del	-	D	37802845	37802854	1	6	270.394	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	0	5	1	6	26	26	26	26	1	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662500872	15	71492405	CT	C	658	PASS	THSD4	CCDS10238.2	r.?	-	-	Del	intronic	D	71492405	71492408	1	49	649.788	-	-	2	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	6	9	6	25	22	25	22	9	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662511887	15	101133775	GGT	G	360	PASS	LINS1	CCDS10385.1	r.?	-	-	Del	intronic	D	101133775	101133779	2	7	325.195	-	-	1	1	1	LINS1|CCDS10385.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINS1|CCDS10385.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	6	0	6	0	18	22	18	22	6	0	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662522817	16	23504135	TGAAAC	T	716	PASS	GGA2	CCDS10611.1	r.?	-	-	Del	intronic	D	23504135	23504141	5	48	758.423	-	-	1	1	1	GGA2|CCDS10611.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GGA2|CCDS10611.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	3	11	4	12	23	41	23	41	4	12	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662556951	17	32642064	TG	T	300	PASS	CCL8	CCDS11280.1	r.?	-	-	Del	upstream	D	32642064	32642066	1	12	270.82	-	-	1	1	1	CCL8|CCDS11280.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CCL8|CCDS11280.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	3	3	25	24	25	24	3	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662564670	17	49610333	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	49610333	49610350	2	10	270.82	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	1	4	1	19	20	19	20	4	1	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662571594	17	66427901	A	ACCCGTGGGCAGGCTGAGGGGAGGCCCAAGAGAGCCATAACTGCTGGGGACATATGAACGC	414	PASS	WIPI1	CCDS11677.1	r.?	-	-	Ins	intronic	I	66427901	66427909	60	63	245.341	-	-	0	1	1	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	18	6	21	0	0	./.	8	6	0	0	26	24	38	35	8	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662580854	18	5036825	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	5036825	5036832	1	16	319.911	-	-	6	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	3	3	4	3	30	26	30	26	4	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662602373	18	69390402	GC	G	660	PASS	-	-	-	-	-	Del	-	D	69390402	69390404	1	42	595.234	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	5	6	6	7	19	17	19	17	6	7	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662628399	19	46775881	A	AGAGGG	538	PASS	-	-	-	-	-	Ins	-	I	46775881	46775902	5	35	503.365	-	-	4	1	1	-	-	./.	0	0	0	0	18	9	19	9	0	0	./.	4	6	4	7	38	32	39	32	5	7	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662646281	2	31597341	CAG	C	300	PASS	XDH	CCDS1775.1	r.?	-	-	Del	intronic	D	31597341	31597357	2	12	268.836	-	-	7	1	-	XDH|CCDS1775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XDH|CCDS1775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	2	3	21	22	21	22	2	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662658592	2	65366823	TA	T	300	PASS	-	-	-	-	-	Del	-	D	65366823	65366833	1	12	258.601	-	-	9	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	2	3	3	3	28	33	28	33	3	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662675847	2	120733569	TTA	T	300	PASS	PTPN4	CCDS2129.1	r.?	-	-	Del	intronic	D	120733569	120733573	2	12	256.795	-	-	1	1	-	PTPN4|CCDS2129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN4|CCDS2129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	2	12	2	0	0	./.	2	3	0	0	23	18	23	18	2	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662679974	2	132617582	ATTCT	A	320	PASS	-	-	-	-	-	Del	-	D	132617582	132617589	4	12	322.604	-	-	1	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	1	5	1	6	22	19	22	19	1	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662688548	2	158448950	CACCTT	C	449	PASS	ACVR1C	CCDS2205.1	r.?	-	-	Del	intronic	D	158448950	158448958	5	21	430.138	-	-	1	1	1	ACVR1C|CCDS2205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACVR1C|CCDS2205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	6	2	6	2	26	24	26	24	6	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662690354	2	164014349	A	AG	329	PASS	-	-	-	-	-	Ins	-	I	164014349	164014350	1	16	307.552	-	-	0	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	3	3	5	4	32	20	32	21	5	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662697059	2	183330767	TTG	T	300	PASS	PDE1A	CCDS2285.1	r.?	-	-	Del	intronic	D	183330767	183330785	2	12	268.836	-	-	8	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	3	2	24	26	24	26	3	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662714044	2	232254128	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	232254128	232254143	2	12	267.632	-	-	7	1	-	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	3	3	18	23	18	23	3	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662743638	21	10846283	GGAGATGAATGGAAT	G	265	PASS	-	-	-	-	-	Del	-	D	10846283	10846304	14	20	380.535	-	-	1	1	1	-	-	./.	0	0	0	0	21	21	22	24	0	0	./.	3	4	2	3	56	47	58	51	3	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662758437	21	47355039	CT	C	300	PASS	PCBP3	CCDS42974.2	r.?	-	-	Del	intronic	D	47355039	47355041	1	12	271.811	-	-	1	1	1	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	2	3	3	32	30	32	30	3	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662823520	3	144804245	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	144804245	144804252	1	9	423.732	-	-	6	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	8	0	9	2	24	21	24	21	9	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662833918	3	176837868	C	CCATA	358	PASS	TBL1XR1	CCDS46961.1	r.?	-	-	Ins	intronic	I	176837868	176837869	4	18	359.026	-	-	0	1	1	TBL1XR1|CCDS46961.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TBL1XR1|CCDS46961.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	8	0	0	./.	2	5	2	5	15	25	16	25	2	5	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662862761	4	63330877	AC	A	300	PASS	-	-	-	-	-	Del	-	D	63330877	63330879	1	12	269.315	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	2	3	15	13	15	13	2	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662923046	5	45083610	CA	C	360	PASS	-	-	-	-	-	Del	-	D	45083610	45083618	1	15	323.464	-	-	7	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	4	2	5	2	30	19	30	19	5	2	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662928117	5	64492459	CT	C	360	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Del	intronic	D	64492459	64492469	1	7	323.464	-	-	9	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	0	6	0	23	23	23	23	6	0	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2662974496	6	18866475	TGTAA	T	269	PASS	-	-	-	-	-	Del	-	D	18866475	18866482	4	12	269.776	-	-	1	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	3	2	3	3	24	20	24	20	3	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663000662	6	93247640	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	93247640	93247648	1	24	426.825	-	-	7	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	3	6	4	20	17	20	17	6	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663011276	6	131086848	CA	C	480	PASS	-	-	-	-	-	Del	-	D	131086848	131086857	1	24	431.641	-	-	8	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	3	5	4	7	15	20	15	20	4	7	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663102972	8	68936190	A	AT	480	PASS	PREX2	CCDS6201.1	r.?	-	-	Ins	intronic	I	68936190	68936199	1	21	427.223	-	-	8	1	1	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	6	2	6	3	21	19	21	19	6	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663104665	8	74069365	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	74069365	74069384	2	12	270.025	-	-	9	1	-	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	3	5	23	26	23	26	3	5	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663109712	8	92100462	A	AT	480	PASS	OTUD6B	CCDS6253.2	r.?	-	-	Ins	downstream	I	92100462	92100468	1	21	427.223	-	-	5	1	1	OTUD6B|CCDS6253.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	OTUD6B|CCDS6253.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	11	9	11	0	0	./.	2	6	2	7	27	19	28	19	2	7	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663109765	8	92261723	ATC	A	300	PASS	SLC26A7	CCDS6254.1	r.?	-	-	Del	intronic	D	92261723	92261743	2	12	270.025	-	-	9	1	1	SLC26A7|CCDS6254.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC26A7|CCDS6254.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	3	33	25	33	25	2	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663124534	8	138769086	CT	C	360	PASS	-	-	-	-	-	Del	-	D	138769086	138769089	1	16	324.03	-	-	2	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	6	3	22	15	22	15	6	3	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663132182	9	14315508	GGCGGGGCGGGGCCGCGGCGCGCCCGGGGCT	G	278	PASS	NFIB	CCDS6474.1	r.?	-	-	Del	upstream	D	14315508	14315549	30	20	534.595	-	-	1	1	1	NFIB|CCDS6474.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NFIB|CCDS6474.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	5	7	5	0	0	./.	1	9	1	5	11	23	12	25	2	9	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663137229	9	29532639	AG	A	600	PASS	-	-	-	-	-	Del	-	D	29532639	29532641	1	20	540.615	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	9	1	9	4	23	17	23	17	9	4	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663138947	9	34029122	T	TA	420	PASS	UBAP2	CCDS6547.1	r.?	-	-	Ins	intronic	I	34029122	34029131	1	18	374.216	-	-	8	1	1	UBAP2|CCDS6547.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	UBAP2|CCDS6547.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	2	5	3	10	28	53	28	53	3	10	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663182105	X	45459167	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	45459167	45459171	1	42	588.309	-	-	3	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	6	5	6	16	22	17	22	5	6	1	1	1	1	1	1	1	1
2574736	PD9590a	PD9590b	2663188687	X	76294272	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	76294272	76294281	1	12	267.413	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	3	4	31	28	31	28	3	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692337845	1	6091799	AAT	A	329	PASS	KCNAB2	CCDS55.1	r.?	-	-	Del	upstream	D	6091799	6091803	2	7	310.902	-	-	1	1	1	KCNAB2|CCDS55.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KCNAB2|CCDS55.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	6	0	7	0	21	17	21	17	7	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692345212	1	27101518	TCCTAG	T	360	PASS	ARID1A	CCDS285.1	r.5172_5176delCCUAG	c.4801_4805delCCTAG	p.P1601fs*45	Del	frameshift	D	27101518	27101525	5	12	322.341	-	-	1	1	1	ARID1A|CCDS285.1|r.5172_5176delCCUAG|c.4801_4805delCCTAG|p.P1601fs*45|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ARID1A|CCDS285.1|r.5172_5176delCCUAG|c.4801_4805delCCTAG|p.P1601fs*45|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	5	7	5	0	0	./.	5	1	7	1	29	18	29	18	7	1	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692347322	1	33475575	CAG	C	268	PASS	AK2	CCDS373.1	r.1594_1595delCU	c.?	p.?	Del	3'UTR variant	D	33475575	33475578	2	9	429.788	-	-	1	1	1	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	8	12	8	0	0	./.	8	0	9	0	39	37	39	37	9	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692360055	1	75203800	AC	A	300	PASS	TYW3	CCDS666.1	r.?	-	-	Del	intronic	D	75203800	75203802	1	10	265.005	-	-	1	1	1	TYW3|CCDS666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TYW3|CCDS666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	1	4	2	4	24	24	24	24	2	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692363533	1	85922528	A	AC	480	PASS	DDAH1	CCDS705.1	r.?	-	-	Ins	intronic	I	85922528	85922536	1	25	423.767	-	-	7	1	1	DDAH1|CCDS705.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DDAH1|CCDS705.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	4	4	8	7	24	34	24	36	8	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692372222	1	114172385	C	CCT	360	PASS	MAGI3	CCDS860.1	r.?	-	-	Ins	intronic	I	114172385	114172389	2	16	308.493	-	-	1	1	-	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	8	4	25	20	25	20	8	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692378006	1	148537493	TG	T	319	PASS	-	-	-	-	-	Del	-	D	148537493	148537495	1	10	483.511	-	-	1	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	9	0	9	0	54	48	54	48	9	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692382502	1	161939244	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	161939244	161939252	1	49	625.415	-	-	7	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	6	6	8	6	30	34	31	34	8	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692394066	1	199134674	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	199134674	199134683	1	15	318.728	-	-	8	1	1	-	-	./.	0	0	0	0	25	17	25	17	0	0	./.	2	4	6	7	30	30	30	31	6	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692397420	1	209695210	G	GACGC	629	PASS	-	-	-	-	-	Ins	-	I	209695210	209695215	4	40	563.263	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	7	6	8	25	30	25	30	6	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692405441	1	234681158	ACCTCTCCCT	A	261	PASS	-	-	-	-	-	Del	-	D	234681158	234681173	9	28	483.511	-	-	1	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	6	3	8	4	36	12	36	12	8	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692410017	1	246848143	CTGA	C	476	PASS	-	-	-	-	-	Del	-	D	246848143	246848148	3	32	535.428	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	7	3	8	5	29	24	29	24	8	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692414527	10	8952442	G	GTC	1020	PASS	-	-	-	-	-	Ins	-	I	8952442	8952444	2	88	891.795	-	-	0	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	7	10	7	11	26	25	26	25	7	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692417325	10	16225378	TA	T	600	PASS	-	-	-	-	-	Del	-	D	16225378	16225382	1	36	538.15	-	-	3	1	1	-	-	./.	0	0	0	0	10	28	10	28	0	0	./.	5	5	11	6	35	35	35	35	11	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692436752	10	73985363	TA	T	300	PASS	C10orf104	CCDS7314.1	r.?	-	-	Del	intronic	D	73985363	73985369	1	12	268.172	-	-	5	1	1	C10orf104|CCDS7314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf104|CCDS7314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	2	10	2	33	14	33	14	10	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692451786	10	121626137	C	CA	300	PASS	C10orf119	CCDS7617.1	r.?	-	-	Ins	intronic	I	121626137	121626146	1	12	266.366	-	-	8	1	1	C10orf119|CCDS7617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf119|CCDS7617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	12	21	0	0	./.	2	3	4	8	16	32	16	33	4	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692451811	10	121710107	AGT	A	269	PASS	-	-	-	-	-	Del	-	D	121710107	121710124	2	12	268.774	-	-	8	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	2	3	3	2	41	30	41	30	3	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692463471	11	20606614	A	AAT	480	PASS	-	-	-	-	-	Ins	-	I	20606614	20606615	2	9	406.023	-	-	0	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	0	8	0	1	26	31	26	31	0	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692469037	11	36506075	TCA	T	420	PASS	TRAF6	CCDS7901.1	r.?	-	-	Del	downstream	D	36506075	36506080	2	18	377.923	-	-	2	1	1	TRAF6|CCDS7901.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TRAF6|CCDS7901.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	18	17	18	0	0	./.	2	5	3	9	26	30	26	30	3	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692481935	11	76495789	GT	G	389	PASS	TSKU	CCDS8246.1	r.?	-	-	Del	intronic	D	76495789	76495791	1	8	361.065	-	-	1	1	1	TSKU|CCDS8246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSKU|CCDS8246.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	0	7	2	11	62	68	62	68	2	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692482210	11	76968548	TA	T	300	PASS	GDPD4	CCDS8249.1	r.?	-	-	Del	intronic	D	76968548	76968550	1	10	266.332	-	-	1	1	1	GDPD4|CCDS8249.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDPD4|CCDS8249.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	1	4	1	12	96	79	96	79	1	12	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692498008	11	132620760	C	CA	660	PASS	ENSG00000183715	CCDS8492.1	r.?	-	-	Ins	intronic	I	132620760	132620761	1	42	587.256	-	-	0	1	1	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	5	6	7	7	21	18	21	18	7	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692501491	12	7761729	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	7761729	7761739	1	42	579.781	-	-	9	1	1	-	-	./.	0	0	0	0	18	26	18	26	0	0	./.	5	6	10	9	38	41	39	41	10	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692502076	12	8644425	GT	G	720	PASS	-	-	-	-	-	Del	-	D	8644425	8644431	1	48	646.937	-	-	5	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	7	5	8	6	34	45	34	45	8	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692505907	12	18045536	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	18045536	18045545	1	18	373.166	-	-	8	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	5	2	6	6	27	36	27	36	6	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692506487	12	19624054	G	GT	300	PASS	AEBP2	CCDS44842.1	r.?	-	-	Ins	intronic	I	19624054	19624064	1	10	255.71	-	-	9	1	1	AEBP2|CCDS44842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AEBP2|CCDS44842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	13	10	0	0	./.	1	4	2	4	45	41	45	41	2	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692510277	12	29233669	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	29233669	29233679	1	12	266.547	-	-	9	1	1	-	-	./.	0	0	0	0	11	25	11	25	0	0	./.	3	2	3	2	45	50	46	50	3	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692512786	12	38392764	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	38392764	38392770	2	7	323.469	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	0	7	1	37	45	37	45	7	1	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692515212	12	44864897	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	44864897	44864907	1	15	319.856	-	-	9	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	4	2	6	4	47	35	48	35	6	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692515700	12	46628232	T	TC	269	PASS	SLC38A1	CCDS41774.1	r.?	-	-	Ins	intronic	I	46628232	46628233	1	12	251.495	-	-	0	1	-	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC38A1|CCDS41774.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	5	2	37	41	37	41	5	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692520954	12	60271033	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	60271033	60271043	1	12	266.547	-	-	9	1	1	-	-	./.	0	0	0	0	24	17	24	18	0	0	./.	3	2	3	2	38	52	38	52	3	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692524032	12	68905751	AG	A	300	PASS	-	-	-	-	-	Del	-	D	68905751	68905753	1	6	264.741	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	0	6	0	47	25	47	25	6	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692526247	12	75432831	TTTCA	T	1225	PASS	KCNC2	CCDS9005.1	r.?	-	-	Del	downstream	D	75432831	75432841	4	154	1239.96	-	-	2	1	1	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	26	17	26	0	0	./.	10	13	15	17	28	44	28	44	15	17	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692527579	12	79469107	TTC	T	300	PASS	SYT1	CCDS9017.1	r.?	-	-	Del	intronic	D	79469107	79469125	2	10	269.557	-	-	8	1	1	SYT1|CCDS9017.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYT1|CCDS9017.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	1	4	1	4	33	42	33	42	1	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692529557	12	85036573	TA	T	660	PASS	-	-	-	-	-	Del	-	D	85036573	85036575	1	36	592.424	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	3	8	6	12	35	45	35	45	6	12	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692530092	12	86893865	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	86893865	86893875	1	12	266.547	-	-	9	1	1	-	-	./.	0	0	0	0	25	17	25	17	0	0	./.	2	3	2	3	33	47	33	47	2	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692530821	12	89524721	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	89524721	89524740	2	12	265.343	-	-	9	1	-	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	2	3	3	3	49	38	49	38	3	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692532043	12	92918583	TA	T	540	PASS	-	-	-	-	-	Del	-	D	92918583	92918588	1	30	483.999	-	-	4	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	5	4	5	8	34	40	34	40	5	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692537683	12	107339714	ATG	A	665	PASS	-	-	-	-	-	Del	-	D	107339714	107339718	2	45	646.937	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	8	4	9	6	36	24	36	24	9	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692540721	12	115466522	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	115466522	115466531	1	10	477.376	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	9	0	13	5	51	45	51	45	13	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692542978	12	120527179	CGT	C	300	PASS	CCDC64	CCDS41845.1	r.?	-	-	Del	intronic	D	120527179	120527195	2	12	266.547	-	-	7	1	-	CCDC64|CCDS41845.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC64|CCDS41845.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	11	8	0	0	./.	3	2	5	3	40	41	42	43	5	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692547601	12	131266348	T	TG	598	PASS	-	-	-	-	-	Ins	-	I	131266348	131266354	1	40	577.974	-	-	5	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	4	7	0	1	51	38	51	41	4	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692558037	13	46694379	CAGGAAGCCAGGAAGCCTCCTGTGTTCTCTGCAGG	C	435	PASS	-	-	-	-	-	Del	-	D	46694379	46694417	34	72	812.789	-	-	1	1	1	-	-	./.	0	0	0	0	22	24	22	24	0	0	./.	8	7	3	5	18	26	23	28	8	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692560635	13	55933659	CT	C	660	PASS	-	-	-	-	-	Del	-	D	55933659	55933663	1	42	596.045	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	6	5	7	24	22	24	22	5	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692563299	13	64381169	CA	C	327	PASS	-	-	-	-	-	Del	-	D	64381169	64381179	1	20	378.7	-	-	9	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	3	4	3	17	22	17	22	4	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692565949	13	73475065	CAGGAG	C	745	PASS	PIBF1	CCDS31991.1	r.?	-	-	Del	intronic	D	73475065	73475072	5	60	810.983	-	-	1	1	1	PIBF1|CCDS31991.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIBF1|CCDS31991.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	11	4	13	11	29	11	29	4	13	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692569982	13	87101116	GTCTTT	G	360	PASS	-	-	-	-	-	Del	-	D	87101116	87101126	5	15	324.514	-	-	1	1	1	-	-	./.	0	0	0	0	27	12	27	12	0	0	./.	4	2	4	3	20	12	20	12	4	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692577196	13	111686704	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	111686704	111686707	1	20	365.454	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	4	3	6	16	23	16	23	3	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692577721	13	113911158	AT	A	840	PASS	CUL4A	CCDS9533.1	r.?	-	-	Del	intronic	D	113911158	113911161	1	64	758.603	-	-	2	1	1	CUL4A|CCDS9533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUL4A|CCDS9533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	7	7	12	7	27	23	27	23	12	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692584525	14	37736705	A	AG	300	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Ins	intronic	I	37736705	37736706	1	12	263.617	-	-	0	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	14	16	0	0	./.	2	3	3	5	32	39	32	39	3	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692594086	14	68452212	G	GT	540	PASS	RAD51L1	CCDS9789.1	r.?	-	-	Ins	intronic	I	68452212	68452219	1	28	482.096	-	-	6	1	1	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	19	15	0	0	./.	3	6	5	6	22	26	22	26	5	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692598466	14	80704861	G	GA	300	PASS	AC010849.1	ENST00000504475	r.?	-	-	Ins	intronic	I	80704861	80704871	1	12	267.831	-	-	9	1	1	AC010849.1|ENST00000504475|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC010849.1|ENST00000504475|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	2	3	2	3	19	39	19	39	2	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692599818	14	85308999	CA	C	660	PASS	-	-	-	-	-	Del	-	D	85308999	85309004	1	42	595.851	-	-	4	1	1	-	-	./.	0	0	0	0	2	13	2	13	0	0	./.	5	6	6	6	24	19	24	19	6	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692601007	14	88954685	A	AGGCGAACACTGCCCACTGTAGT	261	PASS	PTPN21	CCDS9884.1	r.?	-	-	Ins	intronic	I	88954685	88954708	22	30	364.694	-	-	1	1	1	PTPN21|CCDS9884.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPN21|CCDS9884.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	4	5	2	3	18	28	20	31	4	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692603725	14	96830797	ACAGTGAATTAAGACG	A	261	PASS	ATG2B	CCDS9944.2	r.?	-	-	Del	upstream	D	96830797	96830813	15	30	487.515	-	-	1	1	1	ATG2B|CCDS9944.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C14orf129|CCDS32153.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	24	17	24	0	0	./.	4	5	4	5	27	32	27	32	4	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692604226	14	98492249	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	98492249	98492266	2	10	266.627	-	-	8	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	4	1	4	1	34	27	34	27	4	1	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692604609	14	100013198	AGAGTTC	A	290	PASS	CCDC85C	CCDS45161.1	r.?	-	-	Del	intronic	D	100013198	100013205	6	35	541.683	-	-	1	1	1	CCDC85C|CCDS45161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC85C|CCDS45161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	6	7	7	21	25	21	25	7	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692606318	14	105205106	T	TG	300	PASS	ADSSL1	CCDS9991.1	r.?	-	-	Ins	intronic	I	105205106	105205112	1	12	267.831	-	-	5	1	1	ADSSL1|CCDS9991.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADSSL1|CCDS9991.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	6	5	25	31	25	31	6	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692609496	15	24601578	CA	C	600	PASS	-	-	-	-	-	Del	-	D	24601578	24601584	1	32	541.925	-	-	5	1	1	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	7	3	9	4	54	34	54	34	9	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692610147	15	26479761	A	AG	720	PASS	-	-	-	-	-	Ins	-	I	26479761	26479767	1	48	643.085	-	-	5	1	1	-	-	./.	0	0	0	0	10	24	10	26	0	0	./.	5	7	7	10	26	29	26	29	7	10	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692612732	15	34802830	AC	A	300	PASS	-	-	-	-	-	Del	-	D	34802830	34802832	1	12	266.146	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	3	2	4	2	32	29	32	29	4	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692621971	15	62217651	TAACCTTAATTATA	T	261	PASS	VPS13C	CCDS32257.1	r.6674_6683+3delUAUAAUUAAGguu	c.6600_6609+3delTATAATTAAGgtt	p.?	Del	ess splice	D	62217651	62217667	13	24	487.732	-	-	1	1	1	VPS13C|CCDS32257.1|r.6674_6683+3delUAUAAUUAAGguu|c.6600_6609+3delTATAATTAAGgtt|p.?|protein_coding:CDS:exon:extended_cis_splice_site:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:0000147:SO:CGPX06:SO:0000159:SO:0001577:SO:0001576	VPS13C|CCDS32257.1|r.6674_6683+3delUAUAAUUAAGguu|c.6600_6609+3delTATAATTAAGgtt|p.?|protein_coding:CDS:exon:extended_cis_splice_site:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:0000147:SO:CGPX06:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	25	14	25	14	0	0	./.	2	7	4	7	20	21	20	21	4	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692631106	15	90682454	C	CA	411	PASS	-	-	-	-	-	Ins	-	I	90682454	90682463	1	20	375.133	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	3	4	6	11	36	41	37	41	6	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692649129	16	46463342	T	TA	308	PASS	-	-	-	-	-	Ins	-	I	46463342	46463351	1	50	696.051	-	-	8	1	1	-	-	./.	0	0	0	0	95	57	95	58	0	0	./.	9	4	9	4	121	96	122	96	9	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692656199	16	69539015	AG	A	300	PASS	-	-	-	-	-	Del	-	D	69539015	69539017	1	12	264.1	-	-	1	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	7	9	65	79	65	79	7	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692657256	16	70633369	CCTG	C	569	PASS	-	-	-	-	-	Del	-	D	70633369	70633374	3	27	539.036	-	-	1	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	2	8	7	7	106	140	106	141	7	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692682544	17	52435572	AAGCCATTC	A	464	PASS	-	-	-	-	-	Del	-	D	52435572	52435582	8	77	863.789	-	-	1	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	10	6	10	10	25	31	25	31	10	10	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692707288	18	45460619	GAC	G	300	PASS	SMAD2	CCDS11934.1	r.?	-	-	Del	upstream	D	45460619	45460638	2	12	269.743	-	-	9	1	-	SMAD2|CCDS11934.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SMAD2|CCDS11934.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	3	2	35	36	35	36	4	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692707652	18	46663652	CAG	C	604	PASS	DYM	CCDS11937.1	r.?	-	-	Del	intronic	D	46663652	46663656	2	48	650.273	-	-	1	1	1	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	7	5	8	5	39	33	39	33	8	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692710874	18	55993305	T	TGA	720	PASS	NEDD4L	CCDS45872.1	r.?	-	-	Ins	intronic	I	55993305	55993308	2	48	635.221	-	-	1	1	1	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	7	5	8	5	44	40	44	40	8	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692717828	18	76168671	A	AG	540	PASS	-	-	-	-	-	Ins	-	I	76168671	76168674	1	28	480.48	-	-	2	1	1	-	-	./.	0	0	0	0	19	12	19	13	0	0	./.	3	6	5	6	12	25	12	25	5	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692720134	19	4683420	CA	C	480	PASS	DPP9	CCDS45928.1	r.?	-	-	Del	intronic	D	4683420	4683424	1	24	424.085	-	-	3	1	1	DPP9|CCDS45928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP9|CCDS45928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	5	7	28	18	28	18	5	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692730835	19	33369876	A	AAT	300	PASS	CCDC123	CCDS32987.1	r.?	-	-	Ins	downstream	I	33369876	33369878	2	10	265.053	-	-	0	1	1	CCDC123|CCDS32987.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	CCDC123|CCDS32987.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	18	14	18	14	0	0	./.	4	1	4	3	34	28	35	30	4	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692731974	19	36540959	A	AC	269	PASS	WDR62	CCDS46059.1	r.?	-	-	Ins	upstream	I	36540959	36540960	1	6	244.583	-	-	0	1	-	WDR62|CCDS46059.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	THAP8|CCDS33000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	5	0	7	1	25	28	25	28	7	1	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692739917	19	55946254	ATGTGGTGTG	A	336	PASS	SHISA7	CCDS46193.1	r.?	-	-	Del	intronic	D	55946254	55946277	9	40	628.301	-	-	2	1	-	SHISA7|CCDS46193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA7|CCDS46193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	9	3	7	7	32	24	33	24	9	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692741218	2	109141	CT	C	540	PASS	-	-	-	-	-	Del	-	D	109141	109143	1	24	483.089	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	7	2	9	2	29	19	29	19	9	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692744472	2	10724488	CACAA	C	718	PASS	NOL10	CCDS1673.2	r.?	-	-	Del	intronic	D	10724488	10724498	4	54	697.461	-	-	2	1	1	NOL10|CCDS1673.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOL10|CCDS1673.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	5	8	5	8	34	28	34	28	5	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692745017	2	12152632	AGTA	ATG	780	PASS	-	-	-	-	-	Complex	-	DI	12152633	12152635	3	54	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	5	8	0	0	21	38	21	38	5	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692747214	2	19292718	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	19292718	19292728	1	42	581.546	-	-	9	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	5	6	8	6	30	29	30	31	8	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692747890	2	21643257	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	21643257	21643276	2	12	266.911	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	4	2	32	29	32	29	4	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692750878	2	30384880	TCCTTGG	T	406	PASS	YPEL5	CCDS1771.1	r.?	-	-	Del	downstream	D	30384880	30384887	6	63	752.409	-	-	1	1	1	YPEL5|CCDS1771.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	YPEL5|CCDS1771.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	19	18	19	0	0	./.	6	8	7	9	17	29	17	29	7	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692751513	2	32380120	GTTTAT	G	658	PASS	SPAST	CCDS1778.1	r.2532_2536delUUUAU	c.?	p.?	Del	3'UTR variant	D	32380120	32380129	5	49	644.922	-	-	1	1	1	SPAST|CCDS1778.1|r.2532_2536delUUUAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SPAST|CCDS1778.1|r.2532_2536delUUUAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	24	12	24	13	0	0	./.	6	6	9	6	34	28	34	31	9	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692770583	2	95362616	T	TACTG	326	PASS	-	-	-	-	-	Ins	-	I	95362616	95362620	4	15	718.694	-	-	0	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	14	0	14	0	36	19	36	19	14	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692773609	2	105707533	GA	G	360	PASS	MRPS9	CCDS2065.1	r.?	-	-	Del	intronic	D	105707533	105707535	1	12	322.461	-	-	1	1	1	MRPS9|CCDS2065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPS9|CCDS2065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	1	5	1	6	17	24	17	24	1	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692776490	2	116122172	GTA	G	269	PASS	DPP10	CCDS46400.1	r.?	-	-	Del	intronic	D	116122172	116122177	2	12	268.717	-	-	2	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	24	24	24	0	0	./.	2	3	3	5	36	36	36	36	3	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692782444	2	133644839	ATTTTTATTTTATCTATCATCTATCTATCCATCCACCCATAGCAACT	A	300	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Del	intronic	D	133644839	133644889	46	12	268.717	-	-	1	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	3	2	0	0	19	34	22	36	3	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692798652	2	186611494	AAC	A	360	PASS	FSIP2	ENST00000424728	r.717_718delAC	c.717_718delAC	p.T241fs*8	Del	frameshift	D	186611494	186611502	2	12	321.257	-	-	3	1	1	FSIP2|ENST00000424728|r.717_718delAC|c.717_718delAC|p.T241fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FSIP2|ENST00000424728|r.717_718delAC|c.717_718delAC|p.T241fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	12	17	12	0	0	./.	5	1	6	2	29	25	29	25	6	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692802568	2	199833080	TC	T	540	PASS	-	-	-	-	-	Del	-	D	199833080	199833083	1	28	480.681	-	-	2	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	6	3	8	4	31	21	31	21	8	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692805180	2	207479559	G	GT	377	PASS	ADAM23	CCDS2369.1	r.?	-	-	Ins	intronic	I	207479559	207479567	1	20	368.378	-	-	7	1	1	ADAM23|CCDS2369.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM23|CCDS2369.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	9	22	9	0	0	./.	3	4	5	7	38	22	38	22	5	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692806584	2	212278136	TAAG	T	300	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	212278136	212278147	3	12	268.717	-	-	3	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	2	3	3	4	27	20	27	20	3	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692806726	2	212646931	AT	A	300	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	212646931	212646940	1	10	268.115	-	-	8	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	1	4	1	4	29	38	29	38	1	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692815555	2	240010320	CGT	C	300	PASS	HDAC4	CCDS2529.1	r.?	-	-	Del	intronic	D	240010320	240010336	2	10	268.717	-	-	7	1	1	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	1	4	1	4	35	35	35	35	1	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692827106	20	31722269	T	TG	840	PASS	-	-	-	-	-	Ins	-	I	31722269	31722271	1	60	746.476	-	-	1	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	9	5	11	7	34	22	34	22	11	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692827873	20	33175232	AT	A	780	PASS	PIGU	CCDS13239.1	r.?	-	-	Del	intronic	D	33175232	33175234	1	56	701.37	-	-	1	1	1	PIGU|CCDS13239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIGU|CCDS13239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	6	7	8	13	243	220	243	220	8	13	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692828523	20	33737321	AG	A	300	PASS	EDEM2	CCDS13247.1	r.?	-	-	Del	upstream	D	33737321	33737323	1	6	245.999	-	-	1	1	1	EDEM2|CCDS13247.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EDEM2|CCDS13247.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	3	8	3	0	0	./.	5	0	12	0	153	70	153	70	12	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692828732	20	33942212	TG	T	269	PASS	UQCC	CCDS13252.1	r.?	-	-	Del	intronic	D	33942212	33942214	1	6	250.214	-	-	1	1	1	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	0	22	0	107	129	107	129	22	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692829524	20	34595079	TCAGCC	T	356	PASS	C20orf152	CCDS13270.1	r.?	-	-	Del	intronic	D	34595079	34595085	5	9	433.094	-	-	1	1	1	C20orf152|CCDS13270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf152|CCDS13270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	0	8	0	8	90	176	90	176	0	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692829741	20	34836275	TG	T	300	PASS	C20orf4	CCDS13273.1	r.?	-	-	Del	intronic	D	34836275	34836277	1	6	260.449	-	-	1	1	1	C20orf4|CCDS13273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf4|CCDS13273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	25	11	25	0	0	./.	5	0	13	0	158	176	158	176	13	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692829891	20	35090151	T	TCCGC	296	PASS	DLGAP4	CCDS13275.1	r.2_3insccgc	c.?	p.?	Ins	5'UTR variant	I	35090151	35090176	4	8	354.273	-	-	6	1	-	DLGAP4|CCDS13275.1|r.2_3insccgc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	DLGAP4|CCDS13275.1|r.2_3insccgc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	1	11	2	11	0	0	./.	0	7	0	14	22	92	27	93	0	15	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692834729	20	50539716	AC	A	960	PASS	-	-	-	-	-	Del	-	D	50539716	50539718	1	81	843.912	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	8	8	15	11	200	139	200	139	15	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692835201	20	50976274	TTATATCA	T	377	PASS	-	-	-	-	-	Del	-	D	50976274	50976288	7	54	703.778	-	-	1	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	5	8	7	10	202	133	202	133	7	10	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692835675	20	51664848	GGA	G	600	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	51664848	51664868	2	32	540.766	-	-	9	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	3	7	7	9	177	174	177	174	7	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692835799	20	51841394	A	AG	480	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Ins	intronic	I	51841394	51841395	1	16	422.859	-	-	0	1	-	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	25	11	25	0	0	./.	7	1	11	1	130	157	133	158	11	1	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692837083	20	53130320	A	AT	689	PASS	DOK5	CCDS13446.1	r.?	-	-	Ins	intronic	I	53130320	53130326	1	45	641.213	-	-	5	1	1	DOK5|CCDS13446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOK5|CCDS13446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	28	21	28	0	0	./.	8	4	14	7	159	107	162	108	14	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692837943	20	54730928	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	54730928	54730932	2	12	270.684	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	5	4	97	115	97	116	5	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692839000	20	56021269	TGA	T	480	PASS	-	-	-	-	-	Del	-	D	56021269	56021284	2	21	433.094	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	2	10	4	177	168	177	168	10	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692839080	20	56134367	TC	T	629	PASS	PCK1	CCDS13460.1	r.?	-	-	Del	upstream	D	56134367	56134371	1	40	594.3	-	-	3	1	1	PCK1|CCDS13460.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PCK1|CCDS13460.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	14	12	14	0	0	./.	4	7	10	12	191	186	191	186	10	12	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692841966	20	62341040	A	AT	420	PASS	ARFRP1	CCDS46630.1	r.?	-	-	Ins	upstream	I	62341040	62341049	1	18	371.733	-	-	8	1	1	ARFRP1|CCDS46630.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ZGPAT|CCDS13534.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	5	4	7	52	70	52	72	4	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692846872	21	15455372	T	TA	279	PASS	-	-	-	-	-	Ins	-	I	15455372	15455381	1	24	429.789	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	11	0	0	./.	5	3	6	5	31	31	31	31	6	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692859924	22	17745499	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	17745499	17745516	2	10	265.42	-	-	8	1	-	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	4	2	32	38	32	38	4	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692875036	3	7908085	ATACT	A	327	PASS	-	-	-	-	-	Del	-	D	7908085	7908092	4	14	376.892	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	6	1	6	1	16	2	16	2	6	1	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692877576	3	15557044	CA	C	360	PASS	COLQ	CCDS33709.1	r.?	-	-	Del	intronic	D	15557044	15557046	1	12	323.05	-	-	1	1	1	COLQ|CCDS33709.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COLQ|CCDS33709.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	1	5	4	5	19	30	19	30	4	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692878094	3	17038081	C	CT	540	PASS	PLCL2	CCDS33713.1	r.?	-	-	Ins	intronic	I	17038081	17038083	1	30	479.156	-	-	1	1	1	PLCL2|CCDS33713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PLCL2|CCDS33713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	5	4	8	4	22	26	22	26	8	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692884977	3	40539473	C	CT	960	PASS	RNU5B-2P	ENST00000363036	r.?	-	-	Ins	downstream	I	40539473	40539482	1	81	851.232	-	-	8	1	1	RNU5B-2P|ENST00000363036|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	RNU5B-2P|ENST00000363036|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	16	13	16	13	0	0	./.	8	8	10	8	32	34	33	34	10	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692893647	3	68623669	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	68623669	68623676	1	24	416.886	-	-	6	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	3	5	6	9	23	31	23	31	6	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692906352	3	109766147	AAGAG	A	420	PASS	-	-	-	-	-	Del	-	D	109766147	109766157	4	20	376.892	-	-	4	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	3	5	5	29	27	29	27	5	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692915574	3	140616733	TGC	T	300	PASS	-	-	-	-	-	Del	-	D	140616733	140616737	2	10	268.606	-	-	1	1	-	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	1	4	1	5	25	38	25	38	1	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692915588	3	140693709	GT	G	600	PASS	SLC25A36	CCDS3114.1	r.?	-	-	Del	intronic	D	140693709	140693712	1	32	538.417	-	-	2	1	1	SLC25A36|CCDS3114.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A36|CCDS3114.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	3	7	4	10	18	29	18	29	4	10	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692920807	3	157835102	TTG	T	720	PASS	RSRC1	CCDS3181.1	r.?	-	-	Del	intronic	D	157835102	157835105	2	48	646.1	-	-	1	1	1	RSRC1|CCDS3181.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RSRC1|CCDS3181.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	7	5	12	7	28	19	28	19	12	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692925412	3	173093272	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	173093272	173093292	2	6	269.208	-	-	9	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	5	0	5	0	41	15	41	15	5	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692927411	3	179325134	G	GT	600	PASS	MRPL47	CCDS3232.1	r.?	-	-	Ins	upstream	I	179325134	179325141	1	35	531.794	-	-	6	1	1	MRPL47|CCDS3232.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	NDUFB5|CCDS3234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	11	21	11	0	0	./.	6	4	8	6	32	28	33	28	8	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692961379	4	86334479	CA	C	300	PASS	-	-	-	-	-	Del	-	D	86334479	86334489	1	12	269.12	-	-	9	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	2	3	2	3	36	28	36	28	2	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692981921	4	155165464	GT	G	420	PASS	DCHS2	CCDS3785.1	r.?	-	-	Del	intronic	D	155165464	155165466	1	14	376.768	-	-	1	1	1	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCHS2|CCDS3785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	29	17	29	0	0	./.	1	6	3	8	25	28	25	28	3	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692985942	4	167167558	CT	C	360	PASS	-	-	-	-	-	Del	-	D	167167558	167167565	1	15	322.944	-	-	6	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	4	2	6	4	25	26	25	26	6	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692990595	4	180745210	C	CA	747	PASS	-	-	-	-	-	Ins	-	I	180745210	180745217	1	63	740.291	-	-	6	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	6	8	8	9	27	28	28	28	8	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2692996788	5	3139434	CAT	C	269	PASS	-	-	-	-	-	Del	-	D	3139434	3139440	2	12	258.645	-	-	2	1	-	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	3	4	3	29	27	29	27	4	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693000940	5	15605415	C	CA	780	PASS	FBXL7	ENST00000504595	r.?	-	-	Ins	intronic	I	15605415	15605418	1	50	692.828	-	-	2	1	1	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	9	4	11	7	35	29	35	29	11	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693004709	5	26908448	G	GGT	298	PASS	CDH9	CCDS3893.1	r.?	-	-	Ins	intronic	I	26908448	26908449	2	15	316.154	-	-	0	1	1	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	4	2	0	1	27	26	27	27	4	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693011113	5	46040976	TTTGA	T	360	PASS	-	-	-	-	-	Del	-	D	46040976	46040985	4	16	323.379	-	-	2	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	3	3	3	7	39	25	39	25	3	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693013866	5	57317008	CATACATATTT	C	261	PASS	-	-	-	-	-	Del	-	D	57317008	57317019	10	30	485.068	-	-	1	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	5	4	7	5	27	23	27	23	7	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693015921	5	64565130	AT	A	720	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Del	intronic	D	64565130	64565135	1	48	646.758	-	-	4	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	9	23	9	0	0	./.	5	7	8	11	35	36	35	36	8	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693022928	5	87402277	GC	G	445	PASS	-	-	-	-	-	Del	-	D	87402277	87402279	1	36	538.965	-	-	1	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	5	5	7	9	29	27	29	27	7	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693027079	5	102669332	GGTAAGTAGTATTTGTATGA	G	435	PASS	-	-	-	-	-	Del	-	D	102669332	102669353	19	70	808.447	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	6	9	7	9	42	35	42	35	7	9	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693037288	5	137431937	CA	C	300	PASS	WNT8A	CCDS3945.1	r.?	-	-	Del	downstream	D	137431937	137431947	1	12	269.482	-	-	9	1	1	WNT8A|CCDS3945.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	WNT8A|CCDS3945.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	3	2	44	27	44	27	3	2	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693041599	5	152116700	CT	C	660	PASS	-	-	-	-	-	Del	-	D	152116700	152116702	1	42	592.861	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	5	6	8	8	27	21	27	21	8	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693044371	5	161367323	C	CT	960	PASS	-	-	-	-	-	Ins	-	I	161367323	161367331	1	77	849.701	-	-	7	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	6	10	8	12	33	28	33	28	8	12	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693050137	5	178862642	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	178862642	178862652	1	12	260.452	-	-	9	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	3	2	3	3	34	26	34	26	3	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693073774	6	63669134	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	63669134	63669142	1	15	319.814	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	18	0	0	./.	4	2	7	3	19	20	19	20	7	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693092115	6	129484245	A	AT	360	PASS	LAMA2	CCDS5138.1	r.?	-	-	Ins	intronic	I	129484245	129484254	1	15	319.814	-	-	8	1	1	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	21	21	21	0	0	./.	2	4	5	4	19	25	20	25	5	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693092914	6	132370011	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	132370011	132370015	2	7	322.824	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	6	0	8	0	33	24	33	24	8	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693107954	7	7707148	G	GT	600	PASS	RPA3	CCDS5356.1	r.?	-	-	Ins	intronic	I	7707148	7707157	1	32	532.355	-	-	8	1	1	RPA3|CCDS5356.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RPA3|CCDS5356.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	10	0	0	./.	7	3	8	4	37	26	37	27	8	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693111335	7	17306586	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	17306586	17306593	1	52	799.436	-	-	6	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	12	3	12	5	39	30	40	31	12	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693111873	7	19355125	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	19355125	19355130	1	25	425.764	-	-	4	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	4	4	8	6	21	22	22	22	8	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693114402	7	26369693	CCT	C	480	PASS	SNX10	CCDS5399.1	r.?	-	-	Del	intronic	D	26369693	26369696	2	24	430.58	-	-	1	1	1	SNX10|CCDS5399.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SNX10|CCDS5399.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	5	3	6	29	18	29	18	3	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693136208	7	91352196	CACTTTAGACCAAATGGACCT	C	406	PASS	-	-	-	-	-	Del	-	D	91352196	91352217	20	63	753.365	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	6	8	5	7	21	18	22	19	6	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693152045	7	141316412	C	CAT	360	PASS	AGK	CCDS5865.1	r.?	-	-	Ins	intronic	I	141316412	141316423	2	15	316.162	-	-	5	1	1	AGK|CCDS5865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGK|CCDS5865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	2	4	5	6	23	25	24	25	5	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693158425	8	46199	GGC	G	290	PASS	-	-	-	-	-	Del	-	D	46199	46203	2	12	588.214	-	-	1	1	1	-	-	./.	0	0	0	0	15	121	15	129	0	0	./.	0	11	0	50	35	266	35	283	0	52	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693161579	8	9142305	TG	T	960	PASS	-	-	-	-	-	Del	-	D	9142305	9142308	1	72	863.465	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	11	5	15	7	29	18	29	18	15	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693167606	8	29326708	GCCACA	G	478	PASS	-	-	-	-	-	Del	-	D	29326708	29326715	5	24	485.699	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	7	6	11	11	24	11	24	6	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693169834	8	37197878	AAAG	A	298	PASS	-	-	-	-	-	Del	-	D	37197878	37197884	3	7	315.37	-	-	1	1	-	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	6	0	13	0	153	94	153	94	16	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693171078	8	38416344	TG	T	540	PASS	-	-	-	-	-	Del	-	D	38416344	38416354	1	18	469.443	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	8	18	14	174	233	174	233	18	14	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693172251	8	40160473	TA	T	480	PASS	-	-	-	-	-	Del	-	D	40160473	40160475	1	21	428.12	-	-	1	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	6	2	8	3	101	109	101	109	8	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693176567	8	59170102	ACC	A	480	PASS	-	-	-	-	-	Del	-	D	59170102	59170105	2	21	429.926	-	-	2	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	6	2	11	4	33	22	33	22	11	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693185343	8	89802161	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	89802161	89802170	1	15	319.585	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	2	6	3	20	21	21	23	6	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693185830	8	91571086	AC	A	569	PASS	-	-	-	-	-	Del	-	D	91571086	91571089	1	35	536.053	-	-	2	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	6	5	11	22	29	22	29	5	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693185871	8	91635055	A	ATGGC	540	PASS	TMEM64	CCDS34920.2	r.4164_4165insgcca	c.?	p.?	Ins	3'UTR variant	I	91635055	91635065	4	30	464.025	-	-	2	1	1	TMEM64|CCDS34920.2|r.4164_4165insgcca|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TMEM64|CCDS34920.2|r.4164_4165insgcca|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	19	18	19	0	0	./.	5	4	7	7	27	31	28	31	7	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693186944	8	95538974	TAAGAG	T	600	PASS	KIAA1429	CCDS34923.1	r.1506_1510delCUCUU	c.1493_1497delCTCTT	p.S498fs*1	Del	frameshift	D	95538974	95538984	5	36	539.666	-	-	1	1	1	KIAA1429|CCDS34923.1|r.1506_1510delCUCUU|c.1493_1497delCTCTT|p.S498fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	KIAA1429|CCDS34923.1|r.1506_1510delCUCUU|c.1493_1497delCTCTT|p.S498fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	15	13	15	0	0	./.	5	5	8	6	27	34	27	34	8	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693197676	8	131900170	GTCTT	GAC	269	PASS	ADCY8	CCDS6363.1	r.?	-	-	Complex	intronic	DI	131900171	131900174	4	10	0	-	-	0	1	1	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	6	16	7	16	0	0	./.	1	4	0	0	3	26	3	27	1	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693197868	8	132613998	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	132613998	132614002	1	33	639.17	-	-	3	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	10	2	14	5	38	32	38	32	14	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693225574	9	98842713	T	TC	1080	PASS	-	-	-	-	-	Ins	-	I	98842713	98842716	1	100	962.472	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	15	0	0	./.	9	9	9	12	28	35	28	35	9	12	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693227140	9	104735384	TAG	T	480	PASS	-	-	-	-	-	Del	-	D	104735384	104735395	2	25	432.582	-	-	5	1	1	-	-	./.	0	0	0	0	16	26	16	26	0	0	./.	4	4	6	5	26	38	26	38	6	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693233031	9	123830541	CTAGTAAATGAATTCAGTAAAG	C	348	PASS	C5	ENST00000430906	r.?	-	-	Del	intronic	D	123830541	123830564	21	48	648.873	-	-	1	1	1	C5|ENST00000430906|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5|ENST00000430906|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	5	7	5	7	24	20	24	20	5	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693234060	9	127499513	CATCT	C	596	PASS	NR6A1	CCDS35137.1	r.?	-	-	Del	intronic	D	127499513	127499519	4	48	648.873	-	-	1	1	1	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	7	5	7	6	31	25	31	25	7	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693240737	X	9536638	CTG	C	300	PASS	TBL1X	CCDS14133.1	r.?	-	-	Del	intronic	D	9536638	9536657	2	12	268.574	-	-	9	1	-	TBL1X|CCDS14133.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TBL1X|CCDS14133.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	2	4	34	40	34	40	2	4	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693241577	X	13196511	AT	A	660	PASS	-	-	-	-	-	Del	-	D	13196511	13196520	1	40	593.031	-	-	8	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	7	4	7	8	21	33	21	33	7	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693245856	X	29713882	T	TA	600	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29713882	29713884	1	27	532.934	-	-	1	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	8	2	12	5	30	31	30	32	12	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693247316	X	35921375	TC	T	540	PASS	-	-	-	-	-	Del	-	D	35921375	35921377	1	30	486.083	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	5	4	6	6	29	18	29	18	6	6	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693247533	X	38073709	G	GCCTCCCAGA	290	PASS	SRPX	CCDS14245.1	r.?	-	-	Ins	intronic	I	38073709	38073719	9	35	483.565	-	-	1	1	1	SRPX|CCDS14245.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRPX|CCDS14245.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	4	6	4	6	26	30	27	31	5	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693249037	X	44266743	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	44266743	44266750	1	12	320.844	-	-	6	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	1	5	3	5	24	30	25	30	3	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693253175	X	66339869	AC	A	780	PASS	-	-	-	-	-	Del	-	D	66339869	66339878	1	54	702.989	-	-	8	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	5	8	6	11	22	25	22	25	6	12	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693256654	X	81252266	GCAA	G	300	PASS	-	-	-	-	-	Del	-	D	81252266	81252285	3	6	270.38	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	0	5	0	45	22	45	22	5	0	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693257077	X	83072207	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	83072207	83072214	1	63	741.412	-	-	6	1	1	-	-	./.	0	0	0	0	23	22	24	22	0	0	./.	6	8	10	11	31	38	31	38	10	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693259852	X	94276755	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	94276755	94276757	1	35	531.73	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	6	4	8	22	18	22	19	4	8	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693262310	X	104662958	GA	G	540	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104662958	104662966	1	30	486.685	-	-	7	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	28	18	28	0	0	./.	4	5	5	7	22	35	22	35	5	7	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693262439	X	105241411	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	105241411	105241419	1	36	534.74	-	-	7	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	5	5	7	14	30	31	30	32	7	14	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693267164	X	125075327	GCT	G	960	PASS	-	-	-	-	-	Del	-	D	125075327	125075333	2	45	862.81	-	-	2	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	14	2	17	3	29	20	29	20	17	3	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693271854	X	145198707	AG	A	360	PASS	-	-	-	-	-	Del	-	D	145198707	145198709	1	16	324.457	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	3	7	5	35	21	35	21	7	5	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693272157	X	146259753	G	GA	689	PASS	-	-	-	-	-	Ins	-	I	146259753	146259756	1	33	635.668	-	-	2	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	10	3	11	21	37	21	37	3	11	1	1	1	1	1	1	1	1
2628041	PD12664a	PD12664b	2693273594	X	153066835	TC	T	420	PASS	PDZD4	CCDS14732.1	r.?	-	-	Del	downstream	D	153066835	153066839	1	18	370.104	-	-	3	1	1	PDZD4|CCDS14732.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PDZD4|CCDS14732.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	14	15	14	0	0	./.	2	5	5	8	27	31	27	31	5	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691118068	1	1790922	TCAAA	T	360	PASS	GNB1	CCDS34.1	r.?	-	-	Del	intronic	D	1790922	1790935	4	12	322.217	-	-	3	1	1	GNB1|CCDS34.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNB1|CCDS34.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	4	7	20	36	20	36	4	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691125973	1	24393903	TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	TTG	290	PASS	MYOM3	CCDS41281.1	r.?	-	-	Complex	intronic	DI	24393904	24393933	30	32	0	-	-	0	1	-	MYOM3|CCDS41281.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	MYOM3|CCDS41281.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	7	0	0	18	25	18	25	3	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691129042	1	33475575	CAG	C	272	PASS	AK2	CCDS373.1	r.1594_1595delCU	c.?	p.?	Del	3'UTR variant	D	33475575	33475578	2	9	429.622	-	-	1	1	1	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	8	18	8	0	0	./.	8	0	8	0	49	24	49	24	8	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691130709	1	39268216	CCA	C	720	PASS	-	-	-	-	-	Del	-	D	39268216	39268221	2	48	641.423	-	-	2	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	7	5	8	7	40	27	40	27	8	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691141584	1	75372981	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	75372981	75372983	1	12	318.002	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	1	5	2	5	29	26	29	26	2	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691141638	1	75579113	GT	G	540	PASS	-	-	-	-	-	Del	-	D	75579113	75579122	1	18	483.325	-	-	8	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	1	8	4	11	22	35	22	35	4	11	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691142392	1	77989724	CTATTCTAGGTACCTCT	C	377	PASS	AK5	CCDS676.1	r.?	-	-	Del	intronic	D	77989724	77989745	16	54	695.728	-	-	1	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	8	5	8	4	27	28	27	29	8	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691147687	1	94848033	TA	T	600	PASS	-	-	-	-	-	Del	-	D	94848033	94848037	1	35	537.028	-	-	3	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	6	6	8	22	41	22	41	6	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691155061	1	119844958	T	TA	389	PASS	-	-	-	-	-	Ins	-	I	119844958	119844967	1	18	366.287	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	2	5	2	6	33	29	33	29	2	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691158313	1	145112673	A	AT	927	PASS	-	-	-	-	-	Ins	-	I	145112673	145112682	1	90	902.713	-	-	8	1	1	-	-	./.	0	0	0	0	32	65	32	66	0	0	./.	9	8	10	10	132	158	136	161	10	10	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691160084	1	150230422	GCT	G	269	PASS	CA14	CCDS947.1	r.255_256delCU	c.?	p.?	Del	5'UTR variant	D	150230422	150230442	2	10	259.483	-	-	9	1	-	CA14|CCDS947.1|r.255_256delCU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	CA14|CCDS947.1|r.255_256delCU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	10	6	10	6	0	0	./.	4	1	4	2	36	25	36	25	4	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691163499	1	159249978	GTA	G	300	PASS	OR10J3	ENST00000389011	r.?	-	-	Del	intronic	D	159249978	159249994	2	12	268.514	-	-	7	1	1	OR10J3|ENST00000389011|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OR10J3|ENST00000389011|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	3	3	35	36	35	36	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691164214	1	161447891	CAG	C	269	PASS	-	-	-	-	-	Del	-	D	161447891	161447905	2	12	267.31	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	2	3	37	51	37	51	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691167348	1	170711407	CCA	C	540	PASS	PRRX1	CCDS1291.1	r.?	-	-	Del	downstream	D	170711407	170711416	2	18	483.325	-	-	4	1	1	PRRX1|CCDS1291.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRRX1|CCDS1291.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	8	11	8	0	0	./.	8	1	11	2	43	30	43	30	11	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691171884	1	184766000	AAGTGTCTGG	A	464	PASS	FAM129A	CCDS1364.1	r.?	-	-	Del	intronic	D	184766000	184766012	9	77	859.245	-	-	1	1	1	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	10	7	11	40	43	40	43	7	11	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691189014	1	234379093	C	CA	300	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Ins	intronic	I	234379093	234379103	1	12	265.504	-	-	9	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	2	3	34	43	34	43	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691192571	1	242777469	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	242777469	242777479	1	20	370.501	-	-	9	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	4	3	5	3	30	18	31	18	5	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691198204	10	8111432	TCA	T	389	PASS	GATA3	CCDS31143.1	r.1493-3_1493-2delca	c.925-3_925-2delca	p.?	Del	ess splice	D	8111432	8111435	2	18	377.349	-	-	1	1	1	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	10	13	10	13	0	0	./.	5	2	7	6	30	23	30	23	7	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691203623	10	24202800	AC	A	420	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Del	intronic	D	24202800	24202803	1	20	377.349	-	-	2	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	4	5	25	22	25	22	4	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691205121	10	28228067	AAC	A	360	PASS	ARMC4	CCDS7157.1	r.?	-	-	Del	intronic	D	28228067	28228086	2	12	323.442	-	-	9	1	1	ARMC4|CCDS7157.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARMC4|CCDS7157.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	1	5	1	6	32	30	32	30	1	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691207301	10	33964472	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	33964472	33964482	1	10	256.892	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	1	3	27	34	27	34	1	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691215698	10	60026151	G	GA	1020	PASS	IPMK	CCDS7250.1	r.?	-	-	Ins	intronic	I	60026151	60026158	1	90	904.98	-	-	6	1	1	IPMK|CCDS7250.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IPMK|CCDS7250.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	9	0	0	./.	8	9	10	10	41	31	42	32	10	10	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691222480	10	80854031	C	CA	420	PASS	ZMIZ1	CCDS7357.1	r.?	-	-	Ins	intronic	I	80854031	80854032	1	20	371.93	-	-	0	1	1	ZMIZ1|CCDS7357.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZMIZ1|CCDS7357.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	4	3	5	21	24	23	24	3	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691228155	10	99201321	CA	C	329	PASS	ZDHHC16	CCDS7460.1	r.?	-	-	Del	upstream	D	99201321	99201323	1	12	323.442	-	-	1	1	1	ZDHHC16|CCDS7460.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EXOSC1|CCDS7459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	1	5	4	7	16	32	16	32	4	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691255315	11	45596236	TC	T	480	PASS	-	-	-	-	-	Del	-	D	45596236	45596240	1	24	432.038	-	-	3	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	5	5	6	33	35	33	35	5	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691275729	11	112534972	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	112534972	112534991	2	15	324.029	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	2	5	22	26	22	26	2	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691278653	11	121604834	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	121604834	121604842	1	56	694.236	-	-	7	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	7	6	7	7	30	30	30	30	7	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691278690	11	121722300	TG	T	300	PASS	-	-	-	-	-	Del	-	D	121722300	121722302	1	10	270.024	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	1	4	3	5	15	29	15	29	3	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691289072	12	17567010	TA	T	300	PASS	-	-	-	-	-	Del	-	D	17567010	17567020	1	10	262.824	-	-	9	1	1	-	-	./.	0	0	0	0	15	4	15	4	0	0	./.	1	4	1	4	17	24	17	24	1	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691289303	12	18070438	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	18070438	18070446	1	21	427.261	-	-	7	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	6	2	8	17	38	17	39	2	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691290057	12	20100636	TTG	T	840	PASS	-	-	-	-	-	Del	-	D	20100636	20100645	2	63	752.524	-	-	4	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	8	6	12	7	36	39	36	39	12	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691298027	12	46915441	GA	G	358	PASS	-	-	-	-	-	Del	-	D	46915441	46915450	1	20	378.068	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	3	5	4	36	22	36	22	5	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691315020	12	103174709	C	CA	457	PASS	-	-	-	-	-	Ins	-	I	103174709	103174718	1	16	427.261	-	-	8	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	1	7	1	8	19	36	19	36	1	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691322995	12	127294941	TAGACTAAAAGGAACAAGGGAAAAG	T	290	PASS	-	-	-	-	-	Del	-	D	127294941	127294967	24	36	540.097	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	5	4	2	29	33	30	36	5	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691323538	12	128491517	CT	C	300	PASS	-	-	-	-	-	Del	-	D	128491517	128491520	1	10	270.049	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	6	4	28	18	28	18	6	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691334758	13	43316628	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	43316628	43316630	1	21	427.082	-	-	1	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	2	6	4	9	16	34	16	34	4	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691337948	13	53542988	C	CCA	329	PASS	-	-	-	-	-	Ins	-	I	53542988	53542989	2	15	313.388	-	-	0	1	-	-	-	./.	0	0	0	0	16	12	17	12	0	0	./.	4	2	0	0	34	39	34	39	4	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691338361	13	55126819	TCC	T	420	PASS	-	-	-	-	-	Del	-	D	55126819	55126826	2	18	378.964	-	-	6	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	5	6	9	28	37	28	37	6	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691339820	13	59887035	ATCGGT	A	261	PASS	-	-	-	-	-	Del	-	D	59887035	59887042	5	30	487.24	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	4	5	5	7	31	28	31	28	5	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691342109	13	66286968	CATT	C	509	PASS	-	-	-	-	-	Del	-	D	66286968	66286974	3	28	487.24	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	6	3	7	6	19	30	19	30	7	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691346438	13	79223052	A	AC	449	PASS	RNF219	CCDS31997.1	r.?	-	-	Ins	intronic	I	79223052	79223053	1	21	410.826	-	-	0	1	1	RNF219|CCDS31997.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF219|CCDS31997.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	2	6	6	9	27	27	27	27	6	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691347580	13	82801175	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	82801175	82801182	1	20	374.148	-	-	6	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	4	3	5	4	27	22	27	22	5	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691352290	13	97326585	TA	T	300	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Del	intronic	D	97326585	97326589	1	10	270.689	-	-	3	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	1	4	2	4	27	29	27	29	2	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691352609	13	98670062	G	GT	360	PASS	IPO5	CCDS31999.1	r.?	-	-	Ins	intronic	I	98670062	98670070	1	16	320.01	-	-	7	1	1	IPO5|CCDS31999.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IPO5|CCDS31999.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	3	3	8	4	29	29	29	31	8	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691352906	13	99328590	C	CCACG	629	PASS	-	-	-	-	-	Ins	-	I	99328590	99328614	4	42	567.821	-	-	5	1	-	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	6	7	12	41	37	42	38	7	12	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691354772	13	105052088	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	105052088	105052097	1	72	800.628	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	14	9	0	0	./.	8	7	8	8	40	36	40	36	8	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691357278	13	112062028	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	112062028	112062046	2	12	258.648	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	2	3	32	30	32	30	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691361911	14	29882036	TG	T	482	PASS	-	-	-	-	-	Del	-	D	29882036	29882038	1	42	595.989	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	5	6	7	6	27	31	27	31	7	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691368306	14	50048988	G	GT	598	PASS	RPS29	CCDS32072.1	r.?	-	-	Ins	intronic	I	50048988	50048990	1	42	589.366	-	-	1	1	1	RPS29|CCDS32072.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPS29|CCDS32072.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	18	16	0	0	./.	5	6	5	9	25	28	25	28	5	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691370919	14	57127533	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	57127533	57127535	1	27	535.787	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	8	5	10	30	30	31	30	5	10	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691371989	14	60416003	G	GT	377	PASS	-	-	-	-	-	Ins	-	I	60416003	60416006	1	14	696.524	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	13	0	13	0	47	29	47	29	13	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691375410	14	72068119	T	TG	720	PASS	SIPA1L1	CCDS9807.1	r.?	-	-	Ins	intronic	I	72068119	72068121	1	49	642.945	-	-	1	1	1	SIPA1L1|CCDS9807.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SIPA1L1|CCDS9807.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	6	8	6	25	31	25	31	8	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691379043	14	82367370	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	82367370	82367372	1	16	321.472	-	-	1	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	3	3	5	4	35	19	35	19	5	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691384047	14	97748078	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	97748078	97748095	2	12	270.904	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	3	2	3	2	29	38	29	38	3	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691386348	14	105129753	C	CCA	269	PASS	-	-	-	-	-	Ins	-	I	105129753	105129755	2	6	259.465	-	-	0	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	0	5	0	9	12	31	14	31	0	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691403914	15	67727337	A	AAT	358	PASS	IQCH	CCDS32273.1	r.?	-	-	Ins	intronic	I	67727337	67727338	2	18	371.021	-	-	0	1	1	IQCH|CCDS32273.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IQCH|CCDS32273.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	5	2	0	0	29	25	29	26	5	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691405751	15	73275132	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	73275132	73275141	1	18	375.235	-	-	8	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	5	2	10	2	40	30	40	31	10	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691411567	15	92224814	A	AC	600	PASS	-	-	-	-	-	Ins	-	I	92224814	92224822	1	36	534.846	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	5	6	5	35	26	35	27	6	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691411952	15	93443591	TAGAG	T	389	PASS	CHD2	CCDS10374.2	r.174_177delAGAG	c.?	p.?	Del	5'UTR variant	D	93443591	93443600	4	20	379.449	-	-	4	1	1	CHD2|CCDS10374.2|r.174_177delAGAG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	CHD2|CCDS10374.2|r.174_177delAGAG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	15	10	15	10	0	0	./.	4	3	5	3	31	32	31	32	5	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691415157	15	102443497	A	ATCCTT	261	PASS	-	-	-	-	-	Ins	-	I	102443497	102443505	5	10	460.771	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	9	0	10	0	45	26	45	26	10	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691417413	16	6467497	TCTC	T	420	PASS	-	-	-	-	-	Del	-	D	6467497	6467503	3	20	374.531	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	5	6	28	25	28	25	5	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691418928	16	9973272	A	AT	360	PASS	GRIN2A	CCDS10539.1	r.?	-	-	Ins	intronic	I	9973272	9973280	1	15	317.93	-	-	7	1	1	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	2	6	3	28	26	29	26	6	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691421850	16	18686114	CT	C	274	PASS	-	-	-	-	-	Del	-	D	18686114	18686124	1	16	324.553	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	3	3	30	28	30	28	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691444208	17	6394665	TGAA	T	269	PASS	PITPNM3	CCDS11076.1	r.?	-	-	Del	intronic	D	6394665	6394669	3	10	270.814	-	-	1	1	1	PITPNM3|CCDS11076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNM3|CCDS11076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	1	8	5	0	0	./.	4	1	6	1	13	1	13	14	6	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691474672	18	12784588	TTACA	T	598	PASS	PTPN2	CCDS11863.1	r.?	-	-	Del	downstream	D	12784588	12784595	4	40	595.071	-	-	1	1	1	PTPN2|CCDS11863.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PTPN2|CCDS11863.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	7	4	13	5	34	31	34	31	13	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691486013	18	51596357	AT	A	329	PASS	-	-	-	-	-	Del	-	D	51596357	51596366	1	12	325.241	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	1	5	3	5	30	18	30	18	3	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691490272	18	64207310	TTC	T	300	PASS	CDH19	CCDS11994.1	r.?	-	-	Del	intronic	D	64207310	64207330	2	10	269.228	-	-	9	1	1	CDH19|CCDS11994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH19|CCDS11994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	1	4	2	6	31	25	31	25	2	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691495941	19	2728838	TC	T	480	PASS	SLC39A3	CCDS12093.1	r.?	-	-	Del	downstream	D	2728838	2728843	1	24	431.329	-	-	4	1	1	SLC39A3|CCDS12093.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AC005258.1|ENST00000507172|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	5	3	6	6	25	21	25	21	6	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691498149	19	7637002	GGT	G	360	PASS	-	-	-	-	-	Del	-	D	7637002	7637005	2	7	315.068	-	-	1	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	6	0	6	0	25	18	25	18	6	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691504734	19	22698764	C	CCT	360	PASS	-	-	-	-	-	Ins	-	I	22698764	22698765	2	7	316.874	-	-	0	1	-	-	-	./.	0	0	0	0	11	0	11	0	0	0	./.	0	6	1	0	33	30	33	30	1	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691508275	19	35596898	ATCACCGCCGTGACCACGCCGCCACCGTT	A	360	PASS	ENSG00000179066	ENST00000313865	r.27_54del28	c.?	p.?	Del	5'UTR variant	D	35596898	35596927	28	12	319.885	-	-	1	1	-	ENSG00000179066|ENST00000313865|r.27_54del28|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	ENSG00000179066|ENST00000313865|r.27_54del28|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	16	14	16	14	0	0	./.	5	1	0	0	43	40	43	40	5	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691511557	19	45278202	T	TTTTTG	540	PASS	CBLC	CCDS12643.1	r.?	-	-	Ins	upstream	I	45278202	45278237	5	10	459.658	-	-	6	1	-	CBLC|CCDS12643.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CBLC|CCDS12643.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	4	16	4	16	0	0	./.	0	9	0	11	9	44	9	45	0	11	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691515336	19	54383738	AAGAGATTCATAGAGCCAGAGACACAGAGATTCATAGAGACAT	A	269	PASS	MYADM	CCDS12866.1	r.?	-	-	Del	downstream	D	54383738	54383814	42	12	269.882	-	-	1	1	-	MYADM|CCDS12866.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRKCG|CCDS12867.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	11	11	14	0	0	./.	2	3	0	0	21	26	27	41	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691517915	2	1681695	AGT	A	300	PASS	PXDN	CCDS46221.1	r.?	-	-	Del	intronic	D	1681695	1681711	2	6	264.576	-	-	7	1	1	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	5	0	4	1	36	36	36	36	5	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691525168	2	26084913	TA	T	720	PASS	ASXL2	ENST00000435504	r.?	-	-	Del	intronic	D	26084913	26084920	1	48	645.097	-	-	6	1	1	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	5	7	6	11	25	38	25	38	6	11	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691533568	2	51941919	TTG	T	360	PASS	-	-	-	-	-	Del	-	D	51941919	51941923	2	16	315.926	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	2	4	25	28	25	28	3	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691534568	2	55644043	C	CT	420	PASS	CCDC88A	CCDS33203.1	r.?	-	-	Ins	intronic	I	55644043	55644053	1	18	370.888	-	-	9	1	-	CCDC88A|CCDS33203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC88A|CCDS33203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	3	14	3	0	0	./.	5	2	11	3	41	24	41	24	11	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691548042	2	102634556	TTC	T	300	PASS	IL1R2	CCDS2054.1	r.?	-	-	Del	intronic	D	102634556	102634574	2	10	268.188	-	-	8	1	1	IL1R2|CCDS2054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1R2|CCDS2054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	1	4	1	36	23	36	23	4	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691551489	2	114840884	TG	T	300	PASS	-	-	-	-	-	Del	-	D	114840884	114840886	1	6	260.361	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	5	0	8	0	34	17	34	17	8	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691552256	2	117426284	AG	A	720	PASS	-	-	-	-	-	Del	-	D	117426284	117426286	1	48	645.097	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	5	7	5	10	25	27	25	27	5	10	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691555888	2	129014318	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	129014318	129014328	1	18	370.286	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	2	7	4	35	30	36	30	7	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691566463	2	162766916	TA	T	660	PASS	SLC4A10	CCDS46438.1	r.?	-	-	Del	intronic	D	162766916	162766923	1	42	591.339	-	-	6	1	1	SLC4A10|CCDS46438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC4A10|CCDS46438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	5	6	5	6	22	25	22	25	5	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691566667	2	164033420	TA	T	540	PASS	-	-	-	-	-	Del	-	D	164033420	164033425	1	30	483.822	-	-	4	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	4	5	9	8	29	29	29	29	9	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691577726	2	199696447	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	199696447	199696465	2	12	268.79	-	-	8	1	-	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	3	2	25	25	25	25	3	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691580304	2	208321194	GA	G	389	PASS	-	-	-	-	-	Del	-	D	208321194	208321198	1	14	376.306	-	-	3	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	1	6	2	9	26	23	26	23	2	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691582056	2	214017450	CTTCTA	C	447	PASS	IKZF2	CCDS2395.1	r.?	-	-	Del	upstream	D	214017450	214017457	5	30	483.822	-	-	1	1	1	IKZF2|CCDS2395.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	IKZF2|CCDS2395.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	7	13	7	0	0	./.	5	4	5	6	33	27	34	27	6	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691584901	2	222272714	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	222272714	222272719	2	15	322.548	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	6	2	23	29	23	29	6	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691589363	2	236120945	A	ATAAT	747	PASS	-	-	-	-	-	Ins	-	I	236120945	236120953	4	60	718.897	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	9	5	10	6	29	32	29	32	10	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691596492	20	16789763	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	16789763	16789767	1	12	268.631	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	4	4	32	32	32	32	4	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691596831	20	17973538	GGA	G	660	PASS	C20orf72	CCDS13131.1	r.?	-	-	Del	downstream	D	17973538	17973545	2	22	594.6	-	-	3	1	1	C20orf72|CCDS13131.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C20orf72|CCDS13131.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	14	8	14	0	0	./.	1	10	2	14	20	47	20	47	2	14	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691603331	20	37926588	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	37926588	37926605	2	12	271.641	-	-	8	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	2	3	30	41	30	41	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691624226	21	38330549	A	AAAAG	267	PASS	HLCS	CCDS13647.1	r.?	-	-	Ins	intronic	I	38330549	38330553	4	7	309.232	-	-	0	1	-	HLCS|CCDS13647.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HLCS|CCDS13647.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	4	6	4	0	0	./.	6	0	1	0	34	11	34	12	7	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691638616	22	45922205	GC	G	540	PASS	FBLN1	CCDS14067.1	r.?	-	-	Del	intronic	D	45922205	45922208	1	30	489.726	-	-	2	1	1	FBLN1|CCDS14067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBLN1|CCDS14067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	5	4	10	5	36	40	36	40	10	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691643496	3	8934258	CTGTGTGTGTGCATGCACACACACATG	C	348	PASS	RAD18	CCDS2571.1	r.?	-	-	Del	intronic	D	8934258	8934285	26	45	645.737	-	-	1	1	1	RAD18|CCDS2571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAD18|CCDS2571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	8	4	8	4	41	24	41	24	8	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691646632	3	19278584	C	CT	360	PASS	KCNH8	CCDS2632.1	r.?	-	-	Ins	intronic	I	19278584	19278591	1	7	319.557	-	-	6	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	18	22	0	0	./.	0	6	0	7	32	36	33	36	0	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691650668	3	32517919	C	CA	660	PASS	CMTM6	CCDS2653.1	r.?	-	-	Ins	downstream	I	32517919	32517926	1	30	585.253	-	-	6	1	1	CMTM6|CCDS2653.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CMTM6|CCDS2653.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	12	13	12	0	0	./.	2	9	6	11	27	37	27	37	6	11	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691651454	3	34765877	GTTTC	G	480	PASS	-	-	-	-	-	Del	-	D	34765877	34765885	4	21	427.882	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	2	6	3	7	27	29	27	29	3	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691654568	3	45890510	A	AT	540	PASS	LZTFL1	ENST00000439019	r.?	-	-	Ins	intronic	I	45890510	45890516	1	30	478.734	-	-	5	1	1	LZTFL1|ENST00000439019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LZTFL1|ENST00000439019|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	5	4	7	5	32	33	33	34	7	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691656436	3	52024688	T	TGCCGTCCCC	414	PASS	ACY1	CCDS2844.1	r.?	-	-	Ins	downstream	I	52024688	52024708	9	80	750.404	-	-	2	1	1	ACY1|CCDS2844.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ACY1|CCDS2844.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	18	8	18	0	0	./.	7	9	5	9	23	37	26	37	8	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691666100	3	79882770	AC	A	405	PASS	-	-	-	-	-	Del	-	D	79882770	79882773	1	18	377.031	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	2	9	3	30	29	30	29	9	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691672726	3	105891250	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	105891250	105891270	2	12	269.308	-	-	9	1	-	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	4	3	42	23	42	23	4	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691683073	3	139859243	TGA	T	300	PASS	CLSTN2	CCDS3112.1	r.?	-	-	Del	intronic	D	139859243	139859261	2	12	269.308	-	-	8	1	1	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	3	3	29	19	29	19	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691683162	3	140270503	TC	T	402	PASS	CLSTN2	CCDS3112.1	r.?	-	-	Del	intronic	D	140270503	140270505	1	16	426.678	-	-	1	1	1	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	0	17	0	17	0	0	./.	1	7	1	8	1	30	1	30	1	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691683316	3	140942746	AG	A	300	PASS	ACPL2	ENST00000505013	r.?	-	-	Del	upstream	D	140942746	140942753	1	10	269.308	-	-	6	1	1	ACPL2|ENST00000505013|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ACPL2|ENST00000505013|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	10	17	10	0	0	./.	4	1	6	1	31	16	31	16	6	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691688180	3	156602124	G	GT	300	PASS	LEKR1	CCDS33883.1	r.?	-	-	Ins	intronic	I	156602124	156602134	1	10	266.298	-	-	9	1	1	LEKR1|CCDS33883.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LEKR1|CCDS33883.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	1	4	1	4	41	28	41	28	1	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691689577	3	161987022	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	161987022	161987032	1	16	319.557	-	-	9	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	3	3	5	7	26	40	26	40	5	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691690792	3	165514400	GT	G	720	PASS	BCHE	CCDS3198.1	r.?	-	-	Del	intronic	D	165514400	165514408	1	49	645.135	-	-	7	1	1	BCHE|CCDS3198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCHE|CCDS3198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	6	6	8	6	30	26	30	26	8	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691692721	3	172137302	CCT	C	269	PASS	-	-	-	-	-	Del	-	D	172137302	172137318	2	12	260.277	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	2	29	31	29	31	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691694329	3	177416522	AT	A	689	PASS	-	-	-	-	-	Del	-	D	177416522	177416526	1	48	636.104	-	-	3	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	7	5	8	6	32	21	32	21	8	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691694997	3	179551584	GTC	G	300	PASS	PEX5L	CCDS3236.1	r.?	-	-	Del	intronic	D	179551584	179551599	2	10	266.298	-	-	7	1	1	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	1	4	1	4	27	29	27	29	1	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691702930	4	5852756	TC	T	660	PASS	CRMP1	CCDS33950.1	r.?	-	-	Del	intronic	D	5852756	5852761	1	36	592.219	-	-	4	1	1	CRMP1|CCDS33950.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRMP1|CCDS33950.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	8	3	10	5	29	27	29	27	10	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691706053	4	16251448	TA	T	720	PASS	AC006427.1	ENST00000440429	r.?	-	-	Del	intronic	D	16251448	16251450	1	48	644.853	-	-	1	1	1	AC006427.1|ENST00000440429|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC006427.1|ENST00000440429|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	7	7	7	34	41	34	41	7	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691706986	4	19312885	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	19312885	19312893	1	30	479.124	-	-	7	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	5	7	5	32	32	32	33	7	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691710392	4	29548623	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	29548623	29548627	2	7	321.223	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	0	7	0	31	38	31	38	7	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691716313	4	47885271	C	CA	300	PASS	NFXL1	CCDS3478.2	r.?	-	-	Ins	intronic	I	47885271	47885281	1	12	261.364	-	-	9	1	1	NFXL1|CCDS3478.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFXL1|CCDS3478.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	3	3	34	40	38	40	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691726039	4	77761548	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	77761548	77761558	1	12	266.18	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	4	3	26	32	26	33	4	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691730272	4	91763257	TTGACTGGAC	T	319	PASS	FAM190A	CCDS47099.1	r.?	-	-	Del	intronic	D	91763257	91763268	9	42	592.219	-	-	1	1	1	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	6	5	6	5	24	26	24	26	6	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691739833	4	123533753	G	GT	480	PASS	IL21	CCDS3727.1	r.?	-	-	Ins	downstream	I	123533753	123533763	1	24	416.255	-	-	9	1	1	IL21|CCDS3727.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	IL21|CCDS3727.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	22	12	22	12	0	0	./.	3	5	4	9	33	26	34	26	4	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691753511	4	167554149	AG	A	300	PASS	-	-	-	-	-	Del	-	D	167554149	167554151	1	6	266.18	-	-	1	1	-	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	5	0	9	0	37	18	37	18	9	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691754407	4	170359816	G	GA	300	PASS	NEK1	CCDS47162.1	r.?	-	-	Ins	intronic	I	170359816	170359826	1	12	264.976	-	-	9	1	1	NEK1|CCDS47162.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEK1|CCDS47162.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	3	3	39	24	39	25	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691766425	5	9913243	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	9913243	9913263	2	15	322.352	-	-	9	1	-	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	2	5	33	35	33	35	2	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691770989	5	23503814	A	AT	300	PASS	PRDM9	CCDS43307.1	r.?	-	-	Ins	upstream	I	23503814	23503824	1	12	266.62	-	-	9	1	1	PRDM9|CCDS43307.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PRDM9|CCDS43307.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	5	3	33	22	33	22	5	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691772175	5	26908448	G	GGT	360	PASS	CDH9	CCDS3893.1	r.?	-	-	Ins	intronic	I	26908448	26908449	2	15	316.331	-	-	0	1	1	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	6	5	6	0	0	./.	4	2	0	0	27	17	27	17	4	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691776894	5	41396421	TTC	T	300	PASS	PLCXD3	CCDS34150.1	r.?	-	-	Del	intronic	D	41396421	41396439	2	10	269.028	-	-	8	1	1	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	5	18	5	0	0	./.	1	4	1	4	31	35	31	35	1	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691785183	5	73867980	AAAC	A	360	PASS	-	-	-	-	-	Del	-	D	73867980	73867989	3	15	322.954	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	6	4	28	29	28	29	6	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691789570	5	87786872	GC	G	269	PASS	-	-	-	-	-	Del	-	D	87786872	87786877	1	10	269.63	-	-	4	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	6	2	32	21	32	21	6	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691789799	5	88853199	TG	T	360	PASS	-	-	-	-	-	Del	-	D	88853199	88853201	1	16	323.556	-	-	1	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	3	9	32	40	32	40	3	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691794798	5	107415066	G	GT	329	PASS	FBXL17	ENST00000359660	r.?	-	-	Ins	intronic	I	107415066	107415074	1	12	319.341	-	-	7	1	1	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	10	14	0	0	./.	1	5	2	9	21	37	22	37	2	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691800584	5	127334355	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	127334355	127334375	2	12	269.63	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	3	2	29	22	29	22	3	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691801106	5	129570098	TTG	T	480	PASS	-	-	-	-	-	Del	-	D	129570098	129570101	2	24	430.204	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	5	5	8	30	28	30	28	5	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691811381	5	165895702	ATACAAAAAT	A	290	PASS	-	-	-	-	-	Del	-	D	165895702	165895714	9	36	539.26	-	-	1	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	5	5	6	5	18	22	18	23	6	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691833782	6	45952986	G	GT	420	PASS	CLIC5	CCDS47438.1	r.?	-	-	Ins	intronic	I	45952986	45952988	1	18	362.289	-	-	1	1	1	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	2	9	4	29	32	29	32	9	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691835448	6	51917792	T	TA	300	PASS	PKHD1	CCDS4935.1	r.?	-	-	Ins	intronic	I	51917792	51917801	1	12	253.875	-	-	8	1	1	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	13	0	0	./.	3	2	3	4	30	32	30	32	3	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691837440	6	57379589	A	AT	540	PASS	PRIM2	ENST00000425433	r.?	-	-	Ins	intronic	I	57379589	57379596	1	28	479.733	-	-	6	1	1	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	53	32	54	34	0	0	./.	6	3	8	4	104	83	105	83	8	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691853936	6	112922036	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	112922036	112922054	2	10	269.529	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	2	4	25	27	25	27	2	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691855353	6	117907006	AG	A	540	PASS	GOPC	CCDS34523.1	r.?	-	-	Del	intronic	D	117907006	117907009	1	24	485.152	-	-	2	1	1	GOPC|CCDS34523.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GOPC|CCDS34523.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	7	2	8	3	40	25	40	25	8	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691855834	6	119568799	ATG	A	300	PASS	MAN1A1	CCDS5122.1	r.?	-	-	Del	intronic	D	119568799	119568817	2	12	267.121	-	-	8	1	1	MAN1A1|CCDS5122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAN1A1|CCDS5122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	2	3	30	30	30	30	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691857988	6	126919087	G	GT	364	PASS	-	-	-	-	-	Ins	-	I	126919087	126919094	1	28	478.529	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	3	7	5	34	36	34	36	7	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691858369	6	128629826	AAGT	A	267	PASS	PTPRK	CCDS47473.1	r.?	-	-	Del	intronic	D	128629826	128629830	3	16	322.23	-	-	1	1	1	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	3	4	3	20	16	20	16	4	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691860721	6	137243444	G	GCGCCCCCTGCCCTTCGCCGC	307	PASS	SLC35D3	CCDS34544.1	r.43_44inscgcccccugcccuucgccgc	c.?	p.?	Ins	5'UTR variant	I	137243444	137243468	20	40	411.141	-	-	1	1	1	SLC35D3|CCDS34544.1|r.43_44inscgcccccugcccuucgccgc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	SLC35D3|CCDS34544.1|r.43_44inscgcccccugcccuucgccgc|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	8	9	8	9	0	0	./.	4	7	1	2	32	25	35	30	4	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691864520	6	150634883	AT	A	660	PASS	-	-	-	-	-	Del	-	D	150634883	150634886	1	42	589.351	-	-	2	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	6	6	10	23	25	23	25	6	10	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691885106	7	42012105	TC	T	780	PASS	GLI3	CCDS5465.1	r.2024delG	c.1933delG	p.D645fs*48	Del	frameshift	D	42012105	42012110	1	54	699.166	-	-	4	1	1	GLI3|CCDS5465.1|r.2024delG|c.1933delG|p.D645fs*48|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	GLI3|CCDS5465.1|r.2024delG|c.1933delG|p.D645fs*48|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	9	12	9	0	0	./.	5	8	7	8	22	25	22	25	7	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691891366	7	61820078	CTA	C	418	PASS	-	-	-	-	-	Del	-	D	61820078	61820082	2	78	916.656	-	-	1	1	1	-	-	./.	0	0	0	0	87	89	87	89	0	0	./.	12	5	15	6	218	234	218	234	15	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691904583	7	100814649	ACT	A	360	PASS	C7orf52	CCDS5713.1	r.2058_2059delAG	c.?	p.?	Del	3'UTR variant	D	100814649	100814664	2	16	323.526	-	-	7	1	1	C7orf52|CCDS5713.1|r.2058_2059delAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C7orf52|CCDS5713.1|r.2058_2059delAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	10	15	10	0	0	./.	3	3	3	3	26	30	26	30	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691906777	7	106889382	CT	C	300	PASS	COG5	CCDS5743.1	r.?	-	-	Del	intronic	D	106889382	106889392	1	10	269.605	-	-	9	1	1	COG5|CCDS5743.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COG5|CCDS5743.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	4	1	4	1	27	31	27	31	4	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691912489	7	127771807	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	127771807	127771825	2	10	266.594	-	-	8	1	-	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	1	4	2	3	30	35	30	35	2	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691918351	7	145331285	CCT	C	269	PASS	-	-	-	-	-	Del	-	D	145331285	145331300	2	12	267.196	-	-	7	1	-	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	2	4	2	18	32	18	32	4	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691918399	7	145575384	ATCT	A	420	PASS	-	-	-	-	-	Del	-	D	145575384	145575391	3	14	376.844	-	-	2	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	6	4	6	17	27	17	27	4	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691924519	8	3503886	C	CT	420	PASS	CSMD1	ENST00000318252	r.?	-	-	Ins	intronic	I	3503886	3503893	1	18	373.735	-	-	6	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	10	0	0	./.	5	2	6	5	25	24	28	24	6	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691926092	8	8137573	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	8137573	8137590	2	12	269.964	-	-	8	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	2	3	3	3	62	42	62	42	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691927231	8	11357366	A	AT	360	PASS	BLK	CCDS5982.1	r.?	-	-	Ins	intronic	I	11357366	11357376	1	15	319.14	-	-	9	1	1	BLK|CCDS5982.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BLK|CCDS5982.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	2	4	34	35	35	35	2	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691933132	8	27549114	C	CTCTT	300	PASS	-	-	-	-	-	Ins	-	I	27549114	27549118	4	12	257.922	-	-	0	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	5	2	38	29	39	29	5	2	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691941661	8	60579268	CTCT	C	627	PASS	-	-	-	-	-	Del	-	D	60579268	60579279	3	33	646.709	-	-	3	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	10	2	11	44	34	44	34	2	11	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691943741	8	68019051	ACAGT	A	389	PASS	CSPP1	CCDS47870.1	r.?	-	-	Del	intronic	D	68019051	68019060	4	18	374.939	-	-	2	1	1	CSPP1|CCDS47870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSPP1|CCDS47870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	5	3	9	28	33	28	33	3	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691946180	8	76234639	TAAAC	T	360	PASS	-	-	-	-	-	Del	-	D	76234639	76234647	4	16	323.956	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	3	4	31	35	31	35	3	4	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691950358	8	91849558	G	GT	540	PASS	NECAB1	CCDS47889.1	r.?	-	-	Ins	intronic	I	91849558	91849565	1	24	480.516	-	-	6	1	1	NECAB1|CCDS47889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NECAB1|CCDS47889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	13	14	0	0	./.	2	7	2	10	21	32	22	32	2	10	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691961806	8	130070661	CGT	C	449	PASS	-	-	-	-	-	Del	-	D	130070661	130070678	2	25	431.942	-	-	8	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	4	5	5	36	25	36	25	5	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691963760	8	137355794	C	CCA	509	PASS	-	-	-	-	-	Ins	-	I	137355794	137355795	2	18	470.281	-	-	0	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	8	1	1	0	22	26	24	26	9	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691972678	9	19178429	AT	A	740	PASS	-	-	-	-	-	Del	-	D	19178429	19178438	1	63	756.919	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	8	7	9	29	23	29	23	7	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691991220	9	99338934	AAG	A	300	PASS	CDC14C	CCDS6722.1	r.?	-	-	Del	intronic	D	99338934	99338938	2	6	259.491	-	-	1	1	-	CDC14C|CCDS6722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC14C|CCDS6722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	5	0	5	0	14	19	14	19	5	0	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2691991926	9	101932946	ATG	A	480	PASS	-	-	-	-	-	Del	-	D	101932946	101932955	2	25	431.923	-	-	4	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	4	4	7	5	20	26	20	26	7	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692001327	9	132258469	CA	C	360	PASS	-	-	-	-	-	Del	-	D	132258469	132258471	1	7	323.792	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	0	6	0	7	36	33	36	33	0	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692011867	X	32787171	C	CA	300	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	32787171	32787179	1	12	267.428	-	-	7	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	2	3	22	26	23	26	2	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692014726	X	45127342	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	45127342	45127352	1	12	267.428	-	-	9	1	1	-	-	./.	0	0	0	0	9	21	9	22	0	0	./.	2	3	3	3	38	40	38	40	3	3	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692017419	X	57417845	AT	A	360	PASS	FAAH2	CCDS14375.1	r.?	-	-	Del	intronic	D	57417845	57417855	1	15	324.526	-	-	9	1	1	FAAH2|CCDS14375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAAH2|CCDS14375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	4	2	6	23	28	23	28	2	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692017973	X	64458848	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	64458848	64458856	1	30	480.166	-	-	7	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	5	6	9	36	35	38	35	6	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692018817	X	68864904	C	CT	360	PASS	EDA	CCDS14394.1	r.?	-	-	Ins	intronic	I	68864904	68864913	1	16	320.913	-	-	8	1	1	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	3	3	6	5	39	31	39	31	6	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692020196	X	75049575	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	75049575	75049585	1	16	313.087	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	4	5	28	35	28	35	4	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692020429	X	75841970	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	75841970	75841986	2	6	270.438	-	-	7	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	0	5	1	5	28	35	28	35	1	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692023169	X	86409934	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	86409934	86409942	1	10	267.428	-	-	7	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	1	5	1	30	11	30	11	5	1	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692023597	X	87905048	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	87905048	87905055	1	48	641.827	-	-	6	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	7	5	9	6	31	35	31	35	9	6	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692025740	X	97580758	TCTTA	T	447	PASS	-	-	-	-	-	Del	-	D	97580758	97580766	4	28	486.789	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	6	5	8	25	29	25	29	5	8	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692027460	X	105580620	A	AT	449	PASS	-	-	-	-	-	Ins	-	I	105580620	105580629	1	24	424.874	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	5	3	7	7	42	36	43	36	7	7	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692028191	X	109366602	AGT	A	300	PASS	TMEM164	CCDS14550.2	r.?	-	-	Del	intronic	D	109366602	109366618	2	10	269.234	-	-	7	1	1	TMEM164|CCDS14550.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM164|CCDS14550.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	23	9	23	0	0	./.	1	4	3	5	25	33	25	33	3	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692028316	X	110049903	GGACCCTTGGGT	G	377	PASS	-	-	-	-	-	Del	-	D	110049903	110049915	11	54	701.935	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	8	5	8	5	30	25	30	25	8	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692034004	X	134475711	AG	A	720	PASS	ZNF75D	CCDS14648.1	r.2301delC	c.?	p.?	Del	5'UTR variant	D	134475711	134475714	1	45	649.051	-	-	2	1	1	ZNF75D|CCDS14648.1|r.2301delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	ZNF75D|CCDS14648.1|r.2301delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	4	8	4	9	26	25	26	25	4	9	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692034315	X	135831773	AAAAT	A	298	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Del	intronic	D	135831773	135831785	4	15	324.526	-	-	2	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	4	2	5	24	34	24	34	2	5	1	1	1	1	1	1	1	1
2627151	PD13352a	PD13352b	2692037153	X	147231218	GAGTA	G	269	PASS	-	-	-	-	-	Del	-	D	147231218	147231226	4	10	270.438	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	1	4	5	4	41	18	41	18	5	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690100695	1	41482329	TG	T	360	PASS	SLFNL1	CCDS460.1	r.?	-	-	Del	intronic	D	41482329	41482331	1	15	321.092	-	-	1	1	1	SLFNL1|CCDS460.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AL110502.1|ENST00000421714|r.2069delG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	3	6	21	35	21	35	3	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690102039	1	45693092	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	45693092	45693100	1	36	529.935	-	-	7	1	1	-	-	./.	0	0	0	0	13	22	14	23	0	0	./.	5	5	9	6	30	31	30	33	9	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690103830	1	52147138	AT	A	1020	PASS	OSBPL9	CCDS44145.1	r.?	-	-	Del	intronic	D	52147138	52147142	1	90	913.171	-	-	3	1	1	OSBPL9|CCDS44145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBPL9|CCDS44145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	9	8	13	12	34	44	34	44	13	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690110897	1	75252065	CTGTT	C	476	PASS	-	-	-	-	-	Del	-	D	75252065	75252072	4	32	537.159	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	7	3	10	4	31	20	31	20	10	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690113676	1	84088879	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	84088879	84088896	2	15	322.296	-	-	8	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	2	4	2	4	24	28	24	28	2	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690117707	1	96564301	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	96564301	96564309	1	40	582.447	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	7	7	10	30	31	30	32	7	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690119968	1	104410134	CTT	C	480	PASS	-	-	-	-	-	Del	-	D	104410134	104410138	2	24	429.727	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	3	9	4	23	24	23	24	9	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690128821	1	147735772	T	TAGTATTGTGAAG	261	PASS	-	-	-	-	-	Ins	-	I	147735772	147735786	12	18	417.217	-	-	1	1	1	-	-	./.	0	0	0	0	18	10	18	11	0	0	./.	8	1	7	1	39	35	41	35	9	1	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690135295	1	166922228	A	AT	660	PASS	ILDR2	CCDS1256.1	r.?	-	-	Ins	intronic	I	166922228	166922233	1	42	584.253	-	-	4	1	1	ILDR2|CCDS1256.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ILDR2|CCDS1256.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	6	10	6	33	20	33	20	10	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690138380	1	176434849	G	GT	360	PASS	PAPPA2	CCDS41438.1	r.?	-	-	Ins	intronic	I	176434849	176434859	1	16	318.683	-	-	9	1	1	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	3	3	6	6	31	26	31	26	6	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690138495	1	176926041	A	AT	660	PASS	ASTN1	CCDS1319.1	r.?	-	-	Ins	intronic	I	176926041	176926050	1	42	584.253	-	-	8	1	1	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	6	5	8	7	39	29	40	29	8	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690144103	1	195660909	TG	T	300	PASS	-	-	-	-	-	Del	-	D	195660909	195660911	1	12	266.171	-	-	1	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	2	3	2	3	22	22	22	22	2	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690153100	1	223826079	GTA	G	389	PASS	CAPN8	ENST00000366873	r.?	-	-	Del	intronic	D	223826079	223826083	2	20	376.012	-	-	1	1	-	CAPN8|ENST00000366873|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPN8|ENST00000366873|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	4	24	35	24	35	4	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690169492	10	17315960	TTC	T	420	PASS	-	-	-	-	-	Del	-	D	17315960	17315978	2	18	375.374	-	-	8	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	5	2	9	2	17	11	17	11	10	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690182703	10	56129572	ACT	A	420	PASS	PCDH15	CCDS44404.1	r.?	-	-	Del	intronic	D	56129572	56129579	2	20	377.181	-	-	3	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	4	3	6	6	23	25	23	25	6	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690183851	10	59418149	AT	A	1260	PASS	-	-	-	-	-	Del	-	D	59418149	59418155	1	130	1131.54	-	-	5	1	1	-	-	./.	0	0	0	0	25	6	25	6	0	0	./.	9	12	9	13	46	32	46	32	9	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690186036	10	65916335	TTCTA	T	747	PASS	-	-	-	-	-	Del	-	D	65916335	65916343	4	63	750.147	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	6	8	8	10	27	39	27	39	8	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690190617	10	78828353	G	GA	300	PASS	KCNMA1	CCDS7352.1	r.?	-	-	Ins	intronic	I	78828353	78828363	1	12	266.404	-	-	9	1	1	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	3	2	45	37	45	37	3	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690192471	10	85557763	CA	C	540	PASS	-	-	-	-	-	Del	-	D	85557763	85557770	1	30	484.946	-	-	6	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	5	4	8	6	19	22	19	22	8	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690198823	10	105535209	GATC	G	1107	PASS	SH3PXD2A	CCDS31278.1	r.?	-	-	Del	intronic	D	105535209	105535214	3	120	1077.66	-	-	1	1	1	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3PXD2A|CCDS31278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	9	11	12	11	26	31	26	31	12	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690200733	10	112217193	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	112217193	112217195	1	36	586.09	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	16	16	0	0	./.	8	3	12	6	30	35	30	35	12	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690210110	11	4860071	C	CA	600	PASS	MMP26	CCDS7752.1	r.?	-	-	Ins	intronic	I	4860071	4860078	1	36	531.404	-	-	6	1	1	MMP26|CCDS7752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MMP26|CCDS7752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	5	9	8	25	38	25	38	9	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690212840	11	11870249	CG	C	600	PASS	USP47	CCDS41619.1	r.?	-	-	Del	intronic	D	11870249	11870253	1	35	537.425	-	-	3	1	1	USP47|CCDS41619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP47|CCDS41619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	6	7	9	26	21	26	21	7	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690219274	11	30881108	T	TG	300	PASS	DCDC5	ENST00000429306	r.?	-	-	Ins	downstream	I	30881108	30881109	1	12	266.906	-	-	0	1	1	DCDC5|ENST00000429306|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DCDC5|ENST00000429306|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	19	17	19	0	0	./.	3	2	3	2	33	33	34	33	3	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690223762	11	44293208	AT	A	840	PASS	ALX4	CCDS31468.1	r.?	-	-	Del	intronic	D	44293208	44293211	1	60	754.562	-	-	2	1	1	ALX4|CCDS31468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALX4|CCDS31468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	5	9	7	12	28	39	28	39	7	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690227434	11	58941918	CAG	C	360	PASS	DTX4	CCDS44612.1	r.?	-	-	Del	intronic	D	58941918	58941936	2	15	314.267	-	-	8	1	1	DTX4|CCDS44612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DTX4|CCDS44612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	4	2	4	4	32	22	32	22	4	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690232682	11	75382843	TC	T	300	PASS	MAP6	CCDS44686.1	r.?	-	-	Del	upstream	D	75382843	75382845	1	6	263.896	-	-	1	1	1	MAP6|CCDS44686.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MAP6|CCDS44686.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	14	6	14	0	0	./.	5	0	10	0	28	26	28	26	10	0	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690237451	11	91083594	GT	G	780	PASS	-	-	-	-	-	Del	-	D	91083594	91083597	1	54	701.783	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	8	6	8	29	30	29	30	6	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690252616	12	2329040	TG	T	420	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2329040	2329043	1	18	377.908	-	-	2	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	2	7	3	22	24	22	24	7	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690257622	12	15930212	A	AACAC	360	PASS	EPS8	CCDS31753.1	r.?	-	-	Ins	intronic	I	15930212	15930230	4	16	309.472	-	-	8	1	1	EPS8|CCDS31753.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	EPS8|CCDS31753.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	3	4	4	43	23	43	23	4	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690260327	12	23568179	G	GAT	1020	PASS	-	-	-	-	-	Ins	-	I	23568179	23568192	2	90	897.307	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	11	16	0	0	./.	9	8	10	14	45	43	46	43	10	14	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690262240	12	28710941	TATCATCTTCCAGCGAG	T	435	PASS	-	-	-	-	-	Del	-	D	28710941	28710960	16	70	809.803	-	-	1	1	1	-	-	./.	0	0	0	0	13	23	13	23	0	0	./.	9	6	9	6	21	34	22	34	10	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690276238	12	76436804	A	AT	660	PASS	NAP1L1	CCDS9013.1	r.?	-	-	Ins	downstream	I	76436804	76436812	1	42	584.825	-	-	7	1	1	NAP1L1|CCDS9013.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NAP1L1|CCDS9013.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	23	14	23	0	0	./.	5	6	7	12	28	38	28	39	7	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690276646	12	77683227	C	CA	283	PASS	-	-	-	-	-	Ins	-	I	77683227	77683234	1	12	319.105	-	-	6	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	1	5	1	8	18	26	18	26	1	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690284080	12	100878377	TG	T	720	PASS	NR1H4	CCDS9078.1	r.?	-	-	Del	intronic	D	100878377	100878382	1	40	645.434	-	-	4	1	1	NR1H4|CCDS9078.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NR1H4|CCDS9078.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	9	3	10	4	30	20	30	20	10	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690288703	12	115117787	TAGAG	T	598	PASS	TBX3	CCDS9176.1	r.?	-	-	Del	intronic	D	115117787	115117793	4	42	589.039	-	-	2	1	1	TBX3|CCDS9176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBX3|CCDS9176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	6	5	10	8	31	25	31	25	10	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690288869	12	115542298	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	115542298	115542314	2	12	267.526	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	3	40	36	40	36	2	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690295941	12	133827663	AT	A	329	PASS	-	-	-	-	-	Del	-	D	133827663	133827665	1	16	295.624	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	5	5	33	19	33	19	5	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690307125	13	55530777	CT	C	420	PASS	-	-	-	-	-	Del	-	D	55530777	55530785	1	20	379.501	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	9	6	25	20	25	20	9	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690316040	13	86566055	CT	C	360	PASS	-	-	-	-	-	Del	-	D	86566055	86566060	1	16	325.287	-	-	4	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	6	4	16	13	16	13	6	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690334224	14	49932432	AC	A	420	PASS	-	-	-	-	-	Del	-	D	49932432	49932434	1	18	378.56	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	2	5	3	9	21	31	21	31	3	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690345606	14	81740572	A	ATTGAAAATATTG	261	PASS	STON2	CCDS9875.1	r.?	-	-	Ins	intronic	I	81740572	81740587	12	30	422.472	-	-	1	1	1	STON2|CCDS9875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STON2|CCDS9875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	4	5	2	35	30	35	32	5	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690354423	15	20544489	TCCCCCATCTGCCTGTGGTGTCACCAAATGTATCCAGAGACCGCTTGTAAACCTGGAGGGTGTGCTAACGTCAGTGGGGTGTCCTGGAGAGGCAGGAACCTGGGTTTCCAAGGTGCAGATCCTACTGAAGCAAATGGACGTCGCAACCGCGGGCAGAGCTGGCTGTGGTGTC	T	438	PASS	-	-	-	-	-	Del	-	D	20544489	20544666	171	78	918.728	-	-	1	1	1	-	-	./.	0	0	0	0	48	44	48	44	0	0	./.	12	5	0	0	143	89	143	93	12	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690362717	15	42265442	CA	C	1140	PASS	EHD4	CCDS10081.1	r.?	-	-	Del	upstream	D	42265442	42265444	1	110	1026.96	-	-	1	1	1	EHD4|CCDS10081.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AC039056.1|ENST00000499478|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	9	10	13	11	38	43	38	43	13	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690365333	15	49641054	TTCTTCTCTTATTTGATACAAA	T	319	PASS	C15orf33	CCDS32237.1	r.?	-	-	Del	intronic	D	49641054	49641077	21	42	594.648	-	-	1	1	1	C15orf33|CCDS32237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C15orf33|CCDS32237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	21	27	21	0	0	./.	5	6	5	6	41	33	41	33	5	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690366574	15	52434663	G	GT	360	PASS	GNB5	CCDS10149.1	r.?	-	-	Ins	intronic	I	52434663	52434673	1	15	315.651	-	-	9	1	1	GNB5|CCDS10149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GNB5|CCDS10149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	2	4	2	5	43	52	43	52	2	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690369616	15	59949541	CG	C	780	PASS	GTF2A2	CCDS10173.1	r.137delC	c.?	p.?	Del	5'UTR variant	D	59949541	59949549	1	54	702.273	-	-	7	1	1	GTF2A2|CCDS10173.1|r.137delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	GTF2A2|CCDS10173.1|r.137delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	11	10	11	10	0	0	./.	5	8	8	10	43	38	43	38	8	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690371170	15	63843504	CTTTT	C	480	PASS	USP3	CCDS32265.1	r.?	-	-	Del	intronic	D	63843504	63843511	4	9	432.909	-	-	6	1	1	USP3|CCDS32265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP3|CCDS32265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	20	3	20	0	0	./.	0	8	0	11	7	36	7	36	0	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690372980	15	67780289	AG	A	420	PASS	IQCH	CCDS32273.1	r.?	-	-	Del	intronic	D	67780289	67780292	1	18	376.387	-	-	2	1	1	IQCH|CCDS32273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCH|CCDS32273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	2	6	3	51	47	51	47	6	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690376457	15	77071014	ATACATATATACTTATATACCTATAGTTTAAGTATGTT	A	522	PASS	SCAPER	ENST00000303521	r.?	-	-	Del	intronic	D	77071014	77071053	37	91	973.444	-	-	1	1	-	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	6	12	4	4	21	28	23	31	6	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690383319	15	95720330	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	95720330	95720338	1	27	535.116	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	15	9	0	0	./.	2	8	4	10	27	38	27	38	4	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690384917	15	99792704	G	GT	660	PASS	LRRC28	CCDS10380.1	r.?	-	-	Ins	intronic	I	99792704	99792709	1	42	588.628	-	-	4	1	1	LRRC28|CCDS10380.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC28|CCDS10380.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	6	8	6	31	41	34	42	8	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690386063	16	259541	C	CTACTT	569	PASS	LUC7L	CCDS10401.1	r.?	-	-	Ins	intronic	I	259541	259542	5	32	510.343	-	-	0	1	1	LUC7L|CCDS10401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LUC7L|CCDS10401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	7	8	7	54	71	55	71	8	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690388012	16	4506543	GA	G	689	PASS	DNAJA3	CCDS10515.1	r.2531delA	c.?	p.?	Del	3'UTR variant	D	4506543	4506546	1	45	649.258	-	-	2	1	1	DNAJA3|CCDS10515.1|r.2531delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	DNAJA3|CCDS10515.1|r.2531delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	10	15	10	0	0	./.	8	4	8	6	35	42	35	42	8	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690396819	16	23071993	AC	A	360	PASS	USP31	CCDS10607.1	r.?	-	-	Del	downstream	D	23071993	23071998	1	12	324.629	-	-	4	1	1	USP31|CCDS10607.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	USP31|CCDS10607.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	14	15	14	0	0	./.	5	1	6	3	45	34	45	34	6	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690396984	16	23330380	TG	T	269	PASS	SCNN1B	CCDS10609.1	r.?	-	-	Del	intronic	D	23330380	23330382	1	6	250.656	-	-	1	1	1	SCNN1B|CCDS10609.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SCNN1B|CCDS10609.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	5	0	5	0	54	43	54	43	5	0	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690402582	16	33607491	GCA	G	360	PASS	-	-	-	-	-	Del	-	D	33607491	33607508	2	15	323.425	-	-	8	1	-	-	-	./.	0	0	0	0	17	27	17	27	0	0	./.	2	4	3	3	49	76	49	76	3	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690405521	16	50545178	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	50545178	50545198	2	12	270.524	-	-	9	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	2	3	3	5	68	58	68	58	3	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690407196	16	56785165	A	AT	780	PASS	NUP93	CCDS10769.1	r.?	-	-	Ins	intronic	I	56785165	56785172	1	56	695.536	-	-	6	1	1	NUP93|CCDS10769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUP93|CCDS10769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	19	13	0	0	./.	6	7	8	8	22	19	22	19	8	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690428062	17	31103387	CGT	C	300	PASS	MYO1D	CCDS32615.1	r.?	-	-	Del	intronic	D	31103387	31103403	2	6	270.674	-	-	7	1	-	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO1D|CCDS32615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	0	5	0	24	22	24	22	5	0	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690428682	17	33590158	A	AT	480	PASS	SLFN5	CCDS32619.1	r.?	-	-	Ins	intronic	I	33590158	33590168	1	24	428.262	-	-	9	1	1	SLFN5|CCDS32619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLFN5|CCDS32619.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	5	6	7	28	27	29	27	6	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690431273	17	40724087	G	GT	540	PASS	MLX	CCDS11430.1	r.1428_1429insu	c.?	p.?	Ins	3'UTR variant	I	40724087	40724089	1	30	480.591	-	-	1	1	1	MLX|CCDS11430.1|r.1428_1429insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	MLX|CCDS11430.1|r.1428_1429insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	6	13	6	15	0	0	./.	4	5	5	9	26	33	27	33	5	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690437116	17	56190236	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	56190236	56190245	1	20	374.729	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	11	0	0	./.	4	3	5	7	24	36	24	36	5	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690443371	17	72748371	T	TGAGACCA	464	PASS	RAB37	CCDS32722.1	r.?	-	-	Ins	downstream	I	72748371	72748380	7	80	788.491	-	-	1	1	1	RAB37|CCDS32722.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SLC9A3R1|CCDS11705.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	20	7	20	0	0	./.	7	9	7	10	21	34	21	34	7	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690448873	18	5138053	TC	T	960	PASS	-	-	-	-	-	Del	-	D	5138053	5138055	1	81	867.384	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	8	8	10	9	28	30	28	30	10	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690457868	18	36262224	AG	A	780	PASS	-	-	-	-	-	Del	-	D	36262224	36262226	1	56	705.239	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	6	7	6	8	13	21	13	21	6	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690459280	18	41441087	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	41441087	41441094	1	36	590.118	-	-	6	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	8	3	9	3	19	16	19	16	9	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690472629	19	7637002	GGT	G	360	PASS	-	-	-	-	-	Del	-	D	7637002	7637005	2	7	311.95	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	6	0	6	0	32	29	32	29	6	0	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690474693	19	12474851	G	GT	360	PASS	ZNF442	CCDS12271.1	r.?	-	-	Ins	intronic	I	12474851	12474859	1	16	321.583	-	-	7	1	1	ZNF442|CCDS12271.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF442|CCDS12271.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	20	0	0	./.	3	3	6	7	22	33	23	33	6	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690484627	19	39344052	AAAAC	A	313	PASS	HNRNPL	CCDS33015.1	r.?	-	-	Del	upstream	D	39344052	39344063	4	24	433.593	-	-	2	1	1	HNRNPL|CCDS33015.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HNRNPL|CCDS33015.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	5	3	6	5	18	21	18	21	6	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690486777	19	45278202	T	TTTTTG	300	PASS	CBLC	CCDS12643.1	r.?	-	-	Ins	upstream	I	45278202	45278237	5	6	254.74	-	-	6	1	-	CBLC|CCDS12643.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CBLC|CCDS12643.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	2	15	2	15	0	0	./.	0	5	0	8	7	46	8	46	0	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690495812	2	9925007	TAAAAG	T	447	PASS	-	-	-	-	-	Del	-	D	9925007	9925018	5	30	480.668	-	-	2	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	4	5	5	7	30	28	30	28	5	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690499299	2	21097689	C	CT	1140	PASS	-	-	-	-	-	Ins	-	I	21097689	21097696	1	98	1006.65	-	-	6	1	1	-	-	./.	0	0	0	0	15	30	15	32	0	0	./.	6	13	10	16	37	50	37	51	10	16	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690501781	2	28464750	TC	T	300	PASS	BRE	CCDS1764.1	r.?	-	-	Del	intronic	D	28464750	28464752	1	6	254.863	-	-	1	1	1	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	5	0	8	0	20	23	20	23	8	0	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690502388	2	30184730	GA	G	480	PASS	-	-	-	-	-	Del	-	D	30184730	30184733	1	21	423.313	-	-	2	1	1	-	-	./.	0	0	0	0	13	23	13	23	0	0	./.	6	2	10	7	29	21	29	21	10	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690510317	2	53752719	TCCATGTCCAAG	T	406	PASS	-	-	-	-	-	Del	-	D	53752719	53752733	11	48	749.378	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	11	3	11	18	35	18	35	3	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690512342	2	60546214	T	TC	780	PASS	-	-	-	-	-	Ins	-	I	60546214	60546219	1	56	688.411	-	-	4	1	1	-	-	./.	0	0	0	0	11	20	11	22	0	0	./.	6	7	6	10	34	28	34	28	6	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690524267	2	100563987	AAG	A	660	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100563987	100563991	2	42	591.162	-	-	1	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	5	6	6	13	29	40	29	40	6	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690525245	2	104200193	CTT	C	600	PASS	-	-	-	-	-	Del	-	D	104200193	104200196	2	35	537.42	-	-	2	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	4	9	4	26	17	26	17	9	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690529431	2	118904372	GC	G	420	PASS	-	-	-	-	-	Del	-	D	118904372	118904376	1	20	376.194	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	6	4	24	16	24	16	6	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690530032	2	121025369	A	AT	660	PASS	RALB	CCDS2131.1	r.?	-	-	Ins	intronic	I	121025369	121025371	1	42	583.335	-	-	1	1	1	RALB|CCDS2131.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RALB|CCDS2131.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	10	0	0	./.	5	6	7	7	26	24	26	24	7	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690536201	2	139633635	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	139633635	139633642	1	12	265.7	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	11	9	0	0	./.	3	2	6	3	31	14	31	14	6	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690541342	2	155844037	AAGCAT	A	1256	PASS	-	-	-	-	-	Del	-	D	155844037	155844044	5	154	1236.07	-	-	1	1	1	-	-	./.	0	0	0	0	7	27	7	27	0	0	./.	13	10	14	10	33	28	33	28	14	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690543386	2	162228959	ACAT	A	389	PASS	PSMD14	CCDS46437.1	r.?	-	-	Del	intronic	D	162228959	162228966	3	20	376.194	-	-	2	1	1	PSMD14|CCDS46437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMD14|CCDS46437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	4	6	5	20	30	20	30	6	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690544857	2	167804726	TTG	T	420	PASS	XIRP2	CCDS42769.1	r.?	-	-	Del	intronic	D	167804726	167804733	2	8	375.592	-	-	3	1	1	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	24	26	24	0	0	./.	0	7	3	10	20	29	20	29	3	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690547750	2	175901151	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	175901151	175901154	1	32	531.399	-	-	2	1	1	-	-	./.	0	0	0	0	9	25	9	25	0	0	./.	7	3	10	3	32	19	33	19	10	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690549674	2	182725370	T	TTCCTTATTGCCTAAC	290	PASS	-	-	-	-	-	Ins	-	I	182725370	182725386	15	35	447.111	-	-	1	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	4	6	3	5	25	39	27	41	4	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690558228	2	209907773	G	GA	629	PASS	-	-	-	-	-	Ins	-	I	209907773	209907782	1	42	577.314	-	-	8	1	1	-	-	./.	0	0	0	0	26	21	27	21	0	0	./.	6	5	12	5	38	25	38	25	12	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690570192	20	2900364	T	TA	929	PASS	PTPRA	CCDS13038.1	r.?	-	-	Ins	intronic	I	2900364	2900368	1	65	859.309	-	-	3	1	1	PTPRA|CCDS13038.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRA|CCDS13038.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	12	7	21	30	36	31	36	7	21	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690572390	20	8832312	CA	C	574	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8832312	8832314	1	40	593.785	-	-	1	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	7	4	11	20	30	20	30	4	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690572559	20	9574453	ATC	A	300	PASS	PAK7	CCDS13107.1	r.?	-	-	Del	intronic	D	9574453	9574473	2	10	271.544	-	-	9	1	-	PAK7|CCDS13107.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAK7|CCDS13107.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	9	22	9	0	0	./.	1	4	1	4	38	24	38	24	1	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690576369	20	22192215	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	22192215	22192225	1	12	263.116	-	-	9	1	1	-	-	./.	0	0	0	0	25	18	25	18	0	0	./.	3	2	3	2	35	39	35	39	3	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690576750	20	23844025	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	23844025	23844033	1	40	587.765	-	-	7	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	7	4	8	4	32	22	32	24	8	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690584112	20	46158763	TTGCAAC	T	522	PASS	NCOA3	CCDS13406.1	r.?	-	-	Del	intronic	D	46158763	46158774	6	75	977.56	-	-	1	1	1	NCOA3|CCDS13406.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCOA3|CCDS13406.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	14	6	18	26	37	26	37	6	18	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690585576	20	50075775	TG	T	1020	PASS	NFATC2	CCDS33488.1	r.?	-	-	Del	intronic	D	50075775	50075778	1	90	920.843	-	-	2	1	1	NFATC2|CCDS33488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFATC2|CCDS33488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	9	8	12	9	33	27	33	27	12	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690589227	20	60949509	TAGGACACCAGCTGGTGGTTCCTCAAA	T	406	PASS	-	-	-	-	-	Del	-	D	60949509	60949536	26	55	758.518	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	10	4	12	30	26	30	27	4	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690592994	21	11074276	CA	C	665	PASS	-	-	-	-	-	Del	-	D	11074276	11074278	1	45	652.248	-	-	1	1	1	-	-	./.	0	0	0	0	28	121	28	121	0	0	./.	4	8	4	11	64	197	64	197	4	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690595283	21	19166052	A	AT	629	PASS	C21orf91	CCDS42907.1	r.?	-	-	Ins	intronic	I	19166052	19166054	1	42	590.669	-	-	1	1	1	C21orf91|CCDS42907.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C21orf91|CCDS42907.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	11	24	11	0	0	./.	5	6	7	8	24	39	26	39	7	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690600742	21	33502399	A	AAG	300	PASS	-	-	-	-	-	Ins	-	I	33502399	33502405	2	10	243.473	-	-	2	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	1	5	1	22	19	22	20	5	1	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690611446	22	29865831	CT	C	360	PASS	-	-	-	-	-	Del	-	D	29865831	29865833	1	12	324.197	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	1	5	4	5	24	21	24	21	4	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690624863	3	16207953	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	16207953	16207963	1	6	266.178	-	-	9	1	1	-	-	./.	0	0	0	0	9	23	9	23	0	0	./.	0	5	0	5	26	41	27	41	0	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690631714	3	39444715	C	CCA	269	PASS	SNORA62	CCDS2686.1	r.?	-	-	Ins	upstream	I	39444715	39444716	2	10	255.943	-	-	0	1	-	SNORA62|CCDS2686.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SNORA62|CCDS2686.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	15	8	16	8	0	0	./.	4	1	0	0	23	25	24	25	4	1	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690633500	3	45337283	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	45337283	45337298	2	12	267.984	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	2	3	11	30	11	30	2	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690635450	3	51388091	C	CA	660	PASS	DOCK3	CCDS46835.1	r.?	-	-	Ins	intronic	I	51388091	51388093	1	42	585.591	-	-	1	1	1	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	6	5	9	6	26	14	26	14	9	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690639914	3	65530056	G	GA	720	PASS	MAGI1	CCDS33781.1	r.?	-	-	Ins	intronic	I	65530056	65530058	1	40	637.021	-	-	1	1	1	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	21	15	0	0	./.	9	3	11	5	28	15	28	15	11	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690643000	3	75280328	G	GA	756	PASS	-	-	-	-	-	Ins	-	I	75280328	75280338	1	56	681.827	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	14	7	0	0	./.	7	6	13	7	30	36	30	37	13	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690644888	3	78074316	TC	T	720	PASS	-	-	-	-	-	Del	-	D	78074316	78074318	1	49	646.051	-	-	1	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	6	6	7	8	28	27	28	27	7	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690648307	3	89751663	A	AGC	360	PASS	-	-	-	-	-	Ins	-	I	89751663	89751666	2	15	315.801	-	-	1	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	2	4	3	4	16	21	16	21	3	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690658718	3	127920590	TGCTTTCTATGTTC	T	319	PASS	EEFSEC	CCDS33849.1	r.?	-	-	Del	intronic	D	127920590	127920604	13	42	591.612	-	-	1	1	1	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	6	5	7	5	29	29	29	29	7	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690659418	3	130152627	CTTG	C	1046	PASS	COL29A1	ENST00000312481	r.?	-	-	Del	intronic	D	130152627	130152636	3	100	966.669	-	-	2	1	1	COL29A1|ENST00000312481|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL29A1|ENST00000312481|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	9	9	11	10	26	21	26	21	11	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690662678	3	140734404	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	140734404	140734414	1	12	263.77	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	15	17	0	0	./.	2	3	3	3	33	28	33	29	3	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690666056	3	150639598	GAC	G	360	PASS	CLRN1	CCDS3153.1	r.?	-	-	Del	downstream	D	150639598	150639616	2	12	320.015	-	-	8	1	-	CLRN1|CCDS3153.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLRN1|CCDS3153.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	11	15	11	0	0	./.	5	1	5	1	31	19	31	19	5	1	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690668434	3	158449994	TGAA	T	298	PASS	RARRES1	CCDS3184.1	r.489_491delUUC	c.208_210delTTC	p.F70delF	Del	inframe	D	158449994	158450002	3	15	308.576	-	-	2	1	1	RARRES1|CCDS3184.1|r.489_491delUUC|c.208_210delTTC|p.F70delF|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	RARRES1|CCDS3184.1|r.489_491delUUC|c.208_210delTTC|p.F70delF|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	21	15	21	15	0	0	./.	2	4	6	7	31	26	31	26	6	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690676841	3	185430300	CT	C	840	PASS	IGF2BP2	CCDS3273.2	r.?	-	-	Del	intronic	D	185430300	185430302	1	64	753.727	-	-	1	1	1	IGF2BP2|CCDS3273.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF2BP2|CCDS3273.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	7	7	7	7	26	23	26	23	7	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690680690	3	196514686	ACACTTATTGCTCCTACCTGGAAGCTGAAACACAGCCCAGT	A	319	PASS	PAK2	CCDS3321.1	r.?	-	-	Del	intronic	D	196514686	196514731	40	42	592.214	-	-	1	1	1	PAK2|CCDS3321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAK2|CCDS3321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	6	5	0	0	27	23	29	25	6	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690685337	4	12040206	TA	T	1140	PASS	-	-	-	-	-	Del	-	D	12040206	12040208	1	108	1016.53	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	8	11	14	13	30	36	30	36	14	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690685540	4	12651556	TAGTG	T	627	PASS	-	-	-	-	-	Del	-	D	12651556	12651568	4	40	645.822	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	9	5	9	21	29	21	29	5	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690688165	4	21140907	GA	G	360	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21140907	21140909	1	16	322.911	-	-	1	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	3	3	6	20	30	20	30	3	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690688345	4	21584769	AT	A	600	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21584769	21584771	1	36	538.185	-	-	1	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	5	7	6	20	24	20	24	7	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690695491	4	41457789	T	TAA	1049	PASS	LIMCH1	CCDS33977.1	r.?	-	-	Ins	intronic	I	41457789	41457791	2	100	938.63	-	-	1	1	1	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	9	9	10	13	34	28	35	28	10	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690696980	4	46723674	AC	A	413	PASS	-	-	-	-	-	Del	-	D	46723674	46723681	1	18	376.73	-	-	6	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	2	8	7	25	22	25	22	8	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690700567	4	57850442	C	CT	1140	PASS	POLR2B	CCDS3511.1	r.?	-	-	Ins	intronic	I	57850442	57850444	1	110	1006.9	-	-	1	1	1	POLR2B|CCDS3511.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POLR2B|CCDS3511.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	9	10	12	11	31	28	31	28	12	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690702720	4	64296000	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	64296000	64296010	1	16	311.472	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	3	3	7	16	29	16	30	3	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690702869	4	64742266	GT	G	540	PASS	-	-	-	-	-	Del	-	D	64742266	64742269	1	28	484.367	-	-	2	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	6	3	8	5	28	15	28	15	8	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690710325	4	88057950	TA	T	720	PASS	AFF1	CCDS3616.1	r.5151delA	c.?	p.?	Del	3'UTR variant	D	88057950	88057952	1	49	645.822	-	-	1	1	1	AFF1|CCDS3616.1|r.5151delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AFF1|CCDS3616.1|r.5151delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	11	18	11	0	0	./.	6	6	12	8	35	29	35	29	12	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690710767	4	89135844	C	CA	509	PASS	ABCG2	ENST00000515655	r.?	-	-	Ins	intronic	I	89135844	89135853	1	28	474.734	-	-	8	1	1	ABCG2|ENST00000515655|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ABCG2|ENST00000515655|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	14	21	0	0	./.	6	3	12	7	37	37	37	37	12	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690711305	4	91394804	CTGTT	C	329	PASS	FAM190A	CCDS47100.1	r.?	-	-	Del	intronic	D	91394804	91394814	4	15	322.911	-	-	2	1	1	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	2	5	3	26	22	26	22	5	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690716386	4	109844178	GAC	G	300	PASS	COL25A1	CCDS43258.1	r.?	-	-	Del	intronic	D	109844178	109844193	2	12	269.093	-	-	7	1	1	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	3	2	4	2	22	39	22	39	4	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690716787	4	111136347	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	111136347	111136357	1	12	263.072	-	-	9	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	3	2	3	1	31	29	31	29	3	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690719702	4	119801595	A	AT	809	PASS	-	-	-	-	-	Ins	-	I	119801595	119801600	1	60	743.826	-	-	4	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	9	6	11	26	32	26	33	6	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690732220	4	160122701	TTGGCATAATC	T	261	PASS	RAPGEF2	ENST00000505478	r.?	-	-	Del	intronic	D	160122701	160122712	10	28	483.163	-	-	1	1	1	RAPGEF2|ENST00000505478|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF2|ENST00000505478|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	6	3	8	3	28	18	28	18	8	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690732697	4	161336778	GCA	G	269	PASS	-	-	-	-	-	Del	-	D	161336778	161336795	2	12	255.847	-	-	8	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	2	3	26	29	26	29	2	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690733275	4	162731291	T	TA	300	PASS	FSTL5	CCDS3802.1	r.?	-	-	Ins	intronic	I	162731291	162731299	1	12	266.082	-	-	7	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	3	27	35	27	37	3	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690735957	4	170635439	T	TG	660	PASS	CLCN3	CCDS34100.1	r.?	-	-	Ins	intronic	I	170635439	170635440	1	40	581.769	-	-	0	1	1	CLCN3|CCDS34100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLCN3|CCDS34100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	4	7	5	10	33	30	33	31	5	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690741583	4	186135961	CAA	C	694	PASS	SNX25	CCDS34116.1	r.?	-	-	Del	intronic	D	186135961	186135965	2	36	699.641	-	-	3	1	1	SNX25|CCDS34116.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SNX25|CCDS34116.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	2	11	3	14	14	32	14	32	3	14	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690744916	5	984125	ATCTT	A	689	PASS	ENSG00000250173	ENST00000511936	r.?	-	-	Del	downstream	D	984125	984143	4	49	643.688	-	-	4	1	1	ENSG00000250173|ENST00000511936|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000250173|ENST00000511936|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	15	15	15	0	0	./.	6	6	6	7	22	25	22	25	6	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690758040	5	38113144	GAC	G	540	PASS	-	-	-	-	-	Del	-	D	38113144	38113154	2	28	485.023	-	-	4	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	6	3	7	6	26	30	26	30	7	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690758482	5	39585025	CAATGGAATTTCTTCTCTGTAAAAA	C	435	PASS	-	-	-	-	-	Del	-	D	39585025	39585053	24	72	806.566	-	-	1	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	8	7	7	5	29	27	30	29	8	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690759040	5	41408272	TCATATGAATTTATTTTTAAAGATTATCAGCAGGGCTTCCAGAAAAAGAATTATAAGAGACCCAGGTATTACCAATGCTGCTCTTTCAAGGCCCACACTTTGAATGTGAGGTATTAAGGTAATACAGACATCTTCTTGCTCATCAACTACTCATTA	T	290	PASS	PLCXD3	CCDS34150.1	r.?	-	-	Del	intronic	D	41408272	41408431	155	35	538.915	-	-	1	1	1	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	4	6	0	0	17	27	21	33	4	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690761943	5	54375882	GT	G	449	PASS	-	-	-	-	-	Del	-	D	54375882	54375886	1	32	537.711	-	-	3	1	1	-	-	./.	0	0	0	0	19	33	19	33	0	0	./.	3	7	7	12	26	36	26	36	7	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690778853	5	111648737	ATT	A	843	PASS	EPB41L4A	CCDS43350.1	r.?	-	-	Del	intronic	D	111648737	111648741	2	77	862.264	-	-	3	1	1	EPB41L4A|CCDS43350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPB41L4A|CCDS43350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	16	25	16	0	0	./.	10	6	11	7	31	23	31	23	11	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690780253	5	116063285	CTG	C	420	PASS	-	-	-	-	-	Del	-	D	116063285	116063289	2	20	376.638	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	4	6	7	29	19	29	19	6	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690780901	5	118279983	A	AT	780	PASS	DTWD2	ENST00000304058	r.?	-	-	Ins	intronic	I	118279983	118279990	1	50	692.763	-	-	6	1	1	DTWD2|ENST00000304058|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DTWD2|ENST00000304058|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	24	22	24	0	0	./.	9	4	14	4	39	27	39	27	14	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690784051	5	128718008	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	128718008	128718011	1	66	799.342	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	10	7	11	31	33	31	33	7	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690787911	5	141597997	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	141597997	141597999	1	21	425.111	-	-	1	1	-	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	6	2	8	5	28	31	29	32	8	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690788120	5	142238155	CTTAT	C	360	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142238155	142238171	4	15	323.349	-	-	3	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	4	5	5	27	34	27	34	5	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690791002	5	152194864	TTA	T	420	PASS	-	-	-	-	-	Del	-	D	152194864	152194872	2	14	376.638	-	-	3	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	1	6	3	9	15	33	15	33	3	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690791783	5	154566609	AAATC	A	563	PASS	-	-	-	-	-	Del	-	D	154566609	154566616	4	56	698.783	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	7	6	10	6	21	28	21	28	10	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690794189	5	162296070	GC	G	480	PASS	-	-	-	-	-	Del	-	D	162296070	162296073	1	21	431.132	-	-	2	1	1	-	-	./.	0	0	0	0	23	2	23	2	0	0	./.	6	2	10	2	31	9	31	9	10	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690810733	6	27361446	CA	C	1020	PASS	ZNF391	CCDS43429.1	r.?	-	-	Del	intronic	D	27361446	27361448	1	90	915.304	-	-	1	1	1	ZNF391|CCDS43429.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF391|CCDS43429.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	9	8	10	11	25	23	25	23	10	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690812321	6	31202816	TATA	T	468	PASS	-	-	-	-	-	Del	-	D	31202816	31202823	3	28	485.529	-	-	2	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	6	3	8	7	28	32	28	32	8	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690834217	6	107268776	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	107268776	107268794	2	16	323.686	-	-	8	1	-	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	3	4	18	24	18	24	3	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690841586	6	137258545	G	GA	478	PASS	-	-	-	-	-	Ins	-	I	137258545	137258555	1	30	474.09	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	18	15	0	0	./.	5	4	6	5	26	14	26	14	6	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690841980	6	139002174	CT	C	660	PASS	-	-	-	-	-	Del	-	D	139002174	139002181	1	42	593.424	-	-	6	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	5	9	7	21	18	21	18	9	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690842621	6	141640270	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	141640270	141640279	1	56	692.288	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	7	6	11	7	27	15	27	16	11	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690843007	6	143400221	AAG	A	300	PASS	AIG1	CCDS5198.1	r.?	-	-	Del	intronic	D	143400221	143400238	2	6	265.524	-	-	8	1	1	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	0	5	0	5	16	22	16	22	0	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690844285	6	149257657	CAT	C	420	PASS	UST	CCDS5213.1	r.?	-	-	Del	intronic	D	149257657	149257660	2	20	376.429	-	-	1	1	1	UST|CCDS5213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UST|CCDS5213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	3	4	5	5	13	16	13	16	5	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690852638	7	6414191	G	GT	494	PASS	RAC1	CCDS5349.1	r.22_23insu	c.?	p.?	Ins	5'UTR variant	I	6414191	6414193	1	28	479.095	-	-	1	1	1	RAC1|CCDS5349.1|r.22_23insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	RAC1|CCDS5349.1|r.22_23insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	16	12	16	12	0	0	./.	6	3	11	6	35	22	36	22	11	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690853436	7	8862153	TG	T	540	PASS	-	-	-	-	-	Del	-	D	8862153	8862162	1	30	481.503	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	4	5	7	26	23	26	23	5	7	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690855254	7	14220685	T	TA	420	PASS	DGKB	CCDS47547.1	r.?	-	-	Ins	intronic	I	14220685	14220693	1	20	373.098	-	-	7	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	3	7	4	16	20	16	20	7	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690856058	7	16796818	TA	T	1080	PASS	TSPAN13	CCDS5363.1	r.?	-	-	Del	intronic	D	16796818	16796822	1	99	970.231	-	-	3	1	1	TSPAN13|CCDS5363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSPAN13|CCDS5363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	8	10	9	13	20	45	20	45	9	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690861704	7	33997780	GA	G	840	PASS	BMPER	CCDS5442.1	r.?	-	-	Del	intronic	D	33997780	33997786	1	63	754.624	-	-	5	1	1	BMPER|CCDS5442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMPER|CCDS5442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	8	6	11	8	26	29	26	29	11	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690863163	7	38599522	AACCAGTCC	A	435	PASS	AMPH	CCDS5456.1	r.?	-	-	Del	intronic	D	38599522	38599533	8	70	808.526	-	-	1	1	1	AMPH|CCDS5456.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AMPH|CCDS5456.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	6	9	7	10	26	30	26	30	7	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690863971	7	40756589	G	GA	300	PASS	C7orf10	ENST00000309930	r.?	-	-	Ins	intronic	I	40756589	40756599	1	10	253.253	-	-	9	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	5	23	5	0	0	./.	4	1	4	1	41	18	41	18	4	1	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690871160	7	62166575	CAG	C	660	PASS	-	-	-	-	-	Del	-	D	62166575	62166580	2	40	592.919	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	7	4	12	6	36	26	36	26	12	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690879189	7	84052895	AATAG	A	629	PASS	SEMA3A	ENST00000424555	r.?	-	-	Del	intronic	D	84052895	84052904	4	40	592.317	-	-	2	1	1	SEMA3A|ENST00000424555|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEMA3A|ENST00000424555|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	4	7	7	11	21	31	21	31	7	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690881499	7	92338562	T	TA	600	PASS	CDK6	CCDS5628.1	r.?	-	-	Ins	intronic	I	92338562	92338569	1	32	529.986	-	-	6	1	1	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	7	3	10	8	25	24	25	24	10	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690884421	7	101514601	C	CCT	269	PASS	CUX1	CCDS5721.1	r.?	-	-	Ins	intronic	I	101514601	101514602	2	10	259.876	-	-	0	1	1	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	1	4	1	2	26	31	26	31	2	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690884951	7	103032568	GAGTACATGCCAGTGTCTTCCTGGGGCA	G	319	PASS	SLC26A5	CCDS5733.1	r.?	-	-	Del	intronic	D	103032568	103032599	27	36	592.317	-	-	1	1	1	SLC26A5|CCDS5733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC26A5|CCDS5733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	8	3	6	2	28	14	30	15	8	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690892167	7	127489078	AGTT	A	387	PASS	SND1	CCDS34747.1	r.?	-	-	Del	intronic	D	127489078	127489085	3	24	431.214	-	-	2	1	1	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SND1|CCDS34747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	24	17	24	0	0	./.	3	5	6	6	20	20	20	20	6	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690915643	8	41334470	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	41334470	41334475	1	12	253.432	-	-	4	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	3	6	66	59	67	60	3	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690915817	8	41731404	TGGCCTTGGCTGGACAAGTTA	T	319	PASS	ANK1	CCDS47849.1	r.?	-	-	Del	intronic	D	41731404	41731425	20	36	591.507	-	-	1	1	1	ANK1|CCDS47849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK1|CCDS47849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	8	3	6	42	44	42	46	3	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690915915	8	41933706	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	41933706	41933715	1	6	266.678	-	-	8	1	1	-	-	./.	0	0	0	0	10	17	11	17	0	0	./.	5	0	10	4	71	44	72	44	10	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690922666	8	64542426	CT	C	1020	PASS	-	-	-	-	-	Del	-	D	64542426	64542435	1	90	916.939	-	-	8	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	8	9	12	12	32	33	32	33	12	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690931266	8	90427966	G	GTTGTATGC	406	PASS	-	-	-	-	-	Ins	-	I	90427966	90427975	8	63	687.695	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	8	6	7	6	40	43	44	44	8	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690934825	8	101043854	C	CT	545	PASS	RGS22	CCDS43758.1	r.?	-	-	Ins	intronic	I	101043854	101043857	1	35	533.355	-	-	2	1	1	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	26	13	26	0	0	./.	4	6	4	9	36	49	37	50	4	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690941830	8	122336328	TC	T	960	PASS	-	-	-	-	-	Del	-	D	122336328	122336332	1	72	860.593	-	-	3	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	11	5	13	8	43	34	43	34	13	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690949792	8	145012986	AG	A	1169	PASS	PLEC	CCDS43772.1	r.?	-	-	Del	intronic	D	145012986	145012988	1	120	1065.51	-	-	1	1	1	PLEC|CCDS43772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEC|CCDS43772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	11	9	14	13	36	30	36	30	14	13	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690952419	9	6974281	AT	A	1140	PASS	KDM4C	CCDS6471.1	r.?	-	-	Del	intronic	D	6974281	6974286	1	108	1025.49	-	-	4	1	1	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDM4C|CCDS6471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	8	11	8	14	31	46	31	46	8	14	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690953835	9	11130360	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	11130360	11130370	1	15	320.606	-	-	9	1	1	-	-	./.	0	0	0	0	9	23	9	23	0	0	./.	2	4	5	8	16	39	17	39	5	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690954349	9	12840772	AGGCTGAGGTTG	A	319	PASS	-	-	-	-	-	Del	-	D	12840772	12840785	11	40	593.197	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	7	5	8	29	23	29	23	5	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690954902	9	14478389	TACAGA	T	329	PASS	-	-	-	-	-	Del	-	D	14478389	14478399	5	15	324.219	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	4	5	31	25	31	25	4	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690968753	9	75828319	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	75828319	75828335	2	12	270.182	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	2	3	30	28	30	28	2	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690969336	9	77627892	CT	C	989	PASS	C9orf41	CCDS6649.1	r.?	-	-	Del	intronic	D	77627892	77627895	1	78	911.997	-	-	2	1	1	C9orf41|CCDS6649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf41|CCDS6649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	12	5	16	5	34	19	34	19	16	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690971676	9	85628116	GAAC	G	300	PASS	RASEF	CCDS6662.1	r.?	-	-	Del	intronic	D	85628116	85628143	3	10	270.182	-	-	8	1	-	RASEF|CCDS6662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASEF|CCDS6662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	2	25	36	25	36	4	2	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690972937	9	89501004	ATC	A	720	PASS	-	-	-	-	-	Del	-	D	89501004	89501012	2	49	644.825	-	-	3	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	6	6	6	8	25	34	25	34	6	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690973696	9	91685600	ACT	A	300	PASS	SHC3	CCDS6681.1	r.?	-	-	Del	intronic	D	91685600	91685617	2	12	267.172	-	-	8	1	1	SHC3|CCDS6681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHC3|CCDS6681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	2	4	30	26	30	26	2	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690975266	9	97499416	C	CT	629	PASS	MIR24-1	CCDS6713.1	r.?	-	-	Ins	intronic	I	97499416	97499426	1	42	581.758	-	-	9	1	1	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MIR24-1|CCDS6713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	5	6	10	9	39	37	39	37	10	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690977552	9	105589802	GT	G	360	PASS	-	-	-	-	-	Del	-	D	105589802	105589805	1	16	324.219	-	-	2	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	3	4	5	21	25	21	25	4	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690983858	9	124483716	CTGGGAGAAGGATTGATGTGTTG	C	319	PASS	DAB2IP	CCDS6833.2	r.?	-	-	Del	intronic	D	124483716	124483743	22	40	591.993	-	-	1	1	1	DAB2IP|CCDS6833.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAB2IP|CCDS6833.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	7	4	0	0	35	23	37	24	7	4	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690988804	9	138504583	GAGTC	G	449	PASS	-	-	-	-	-	Del	-	D	138504583	138504590	4	25	432.292	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	4	4	6	5	22	25	22	25	6	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690992198	X	12275426	G	GT	780	PASS	FRMPD4	CCDS35201.1	r.?	-	-	Ins	intronic	I	12275426	12275435	1	56	693.356	-	-	8	1	1	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	7	6	8	10	33	38	33	38	8	10	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690993125	X	15796874	AAG	A	300	PASS	INE2	CCDS14171.1	r.?	-	-	Del	intronic	D	15796874	15796890	2	12	270.38	-	-	7	1	1	INE2|CCDS14171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INE2|CCDS14171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	3	29	33	29	33	3	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690993279	X	16290576	CTT	C	1140	PASS	-	-	-	-	-	Del	-	D	16290576	16290581	2	110	1024.43	-	-	4	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	9	10	13	12	27	36	27	36	13	12	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690996161	X	28625736	G	GT	1260	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	28625736	28625738	1	132	1119.94	-	-	1	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	11	10	16	11	34	27	34	27	16	11	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2690997262	X	33215558	GGT	G	300	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	33215558	33215577	2	12	266.166	-	-	9	1	-	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	2	3	2	3	22	23	22	23	2	3	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691001422	X	50746165	GA	G	420	PASS	-	-	-	-	-	Del	-	D	50746165	50746170	1	20	378.532	-	-	4	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	4	3	6	24	28	24	28	3	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691002920	X	57482213	TGTAGAA	T	406	PASS	FAAH2	CCDS14375.1	r.?	-	-	Del	intronic	D	57482213	57482223	6	60	757.065	-	-	1	1	1	FAAH2|CCDS14375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAAH2|CCDS14375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	19	27	19	0	0	./.	5	9	10	9	28	24	28	24	10	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691005665	X	74213794	TG	T	696	PASS	-	-	-	-	-	Del	-	D	74213794	74213797	1	48	648.913	-	-	2	1	1	-	-	./.	0	0	0	0	26	23	26	23	0	0	./.	5	7	6	9	24	29	24	29	6	9	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691006038	X	75751463	CT	C	480	PASS	-	-	-	-	-	Del	-	D	75751463	75751470	1	24	432.006	-	-	6	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	5	3	9	6	31	31	31	31	9	6	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691014351	X	112202603	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	112202603	112202612	1	49	639.882	-	-	8	1	-	-	-	./.	0	0	0	0	27	7	28	8	0	0	./.	6	6	9	8	26	32	26	32	9	8	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691018058	X	126004197	TA	T	480	PASS	-	-	-	-	-	Del	-	D	126004197	126004199	1	25	432.006	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	4	4	6	5	26	29	26	29	6	5	1	1	1	1	1	1	1	1
2627072	PD13353a	PD13353b	2691021372	X	140697373	CTTA	C	749	PASS	-	-	-	-	-	Del	-	D	140697373	140697377	3	44	702.989	-	-	1	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	10	3	12	6	33	26	33	26	12	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694483538	1	985800	AC	A	598	PASS	AGRN	CCDS30551.1	r.5027-6delc	c.4977-6delc	p.?	Del	splice region	D	985800	985805	1	42	589.194	-	-	4	1	1	AGRN|CCDS30551.1|r.5027-6delc|c.4977-6delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	AGRN|CCDS30551.1|r.5027-6delc|c.4977-6delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	18	14	18	14	0	0	./.	5	6	9	8	22	19	22	19	9	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694483541	1	988993	TCG	T	480	PASS	AGRN	CCDS30551.1	r.?	-	-	Del	intronic	D	988993	988996	2	24	428.341	-	-	1	1	1	AGRN|CCDS30551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGRN|CCDS30551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	5	6	9	15	24	15	24	6	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694486686	1	11170265	T	TCA	1500	PASS	MTOR	CCDS127.1	r.?	-	-	Ins	intronic	I	11170265	11170274	2	180	1310.34	-	-	4	1	1	MTOR|CCDS127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTOR|CCDS127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	11	14	11	15	41	41	41	42	11	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694491329	1	25092500	GT	G	660	PASS	CLIC4	CCDS256.1	r.?	-	-	Del	intronic	D	25092500	25092509	1	42	589.796	-	-	8	1	1	CLIC4|CCDS256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIC4|CCDS256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	6	8	7	16	18	16	18	8	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694494139	1	35998162	A	AC	2218	PASS	KIAA0319L	CCDS390.1	r.?	-	-	Ins	intronic	I	35998162	35998163	1	396	2007.98	-	-	0	1	1	KIAA0319L|CCDS390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0319L|CCDS390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	17	21	22	24	39	45	39	45	22	24	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694497614	1	44273133	A	AT	360	PASS	ST3GAL3	CCDS493.1	r.?	-	-	Ins	intronic	I	44273133	44273135	1	12	318.095	-	-	1	1	1	ST3GAL3|CCDS493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ST3GAL3|CCDS493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	1	10	5	24	18	27	19	10	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694497946	1	45176300	AAG	A	360	PASS	C1orf228	ENST00000458657	r.?	-	-	Del	intronic	D	45176300	45176304	2	7	315.687	-	-	1	1	-	C1orf228|ENST00000458657|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf228|ENST00000458657|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	4	22	4	0	0	./.	6	0	4	0	51	18	51	18	6	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694501207	1	53386799	GCACCCTCCT	G	261	PASS	ECHDC2	CCDS571.1	r.?	-	-	Del	intronic	D	53386799	53386812	9	28	482.561	-	-	1	1	1	ECHDC2|CCDS571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ECHDC2|CCDS571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	3	6	4	6	29	31	29	31	4	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694506323	1	66225860	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	66225860	66225870	1	10	260.262	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	1	4	1	5	39	50	41	50	1	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694510376	1	77325823	GT	G	1078	PASS	-	-	-	-	-	Del	-	D	77325823	77325825	1	90	1018.74	-	-	1	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	5	14	8	14	41	50	41	50	8	14	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694511222	1	79510396	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	79510396	79510406	1	55	736.201	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	10	6	12	42	54	42	55	6	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694517789	1	95130122	T	TTTA	658	PASS	-	-	-	-	-	Ins	-	I	95130122	95130128	3	48	621.74	-	-	1	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	7	5	10	7	43	27	44	27	10	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694519085	1	98710577	CT	C	1800	PASS	-	-	-	-	-	Del	-	D	98710577	98710579	1	255	1606.73	-	-	1	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	14	16	20	22	40	36	40	36	20	22	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694520385	1	101884417	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	101884417	101884425	1	32	530.158	-	-	7	1	1	-	-	./.	0	0	0	0	20	16	21	16	0	0	./.	7	3	8	5	45	23	46	23	8	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694526785	1	117837825	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	117837825	117837841	2	16	321.707	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	3	3	36	43	36	43	3	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694527788	1	120624264	C	CCT	252	PASS	-	-	-	-	-	Ins	-	I	120624264	120624277	2	18	365.09	-	-	6	1	1	-	-	./.	0	0	0	0	20	33	22	33	0	0	./.	2	5	3	8	83	93	84	95	3	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694528749	1	142598728	T	TA	295	PASS	-	-	-	-	-	Ins	-	I	142598728	142598736	1	16	316.289	-	-	7	1	1	-	-	./.	0	0	0	0	77	53	77	53	0	0	./.	3	3	4	5	99	104	100	106	4	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694529727	1	143199389	CAA	C	308	PASS	-	-	-	-	-	Del	-	D	143199389	143199394	2	17	857.886	-	-	4	1	1	-	-	./.	0	0	0	0	22	45	22	45	0	0	./.	16	0	18	0	100	64	100	64	18	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694531614	1	145827832	C	CA	269	PASS	GPR89A	CCDS41377.1	r.?	-	-	Ins	upstream	I	145827832	145827837	1	6	263.273	-	-	4	1	-	GPR89A|CCDS41377.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	GPR89A|CCDS41377.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	2	12	2	0	0	./.	5	0	8	0	33	10	33	11	8	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694534155	1	151699601	CA	C	300	PASS	C1orf230	ENST00000326413	r.?	-	-	Del	intronic	D	151699601	151699611	1	12	268.089	-	-	9	1	1	C1orf230|ENST00000326413|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf230|ENST00000326413|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	3	2	3	2	38	32	38	32	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694540654	1	168351744	CA	C	1200	PASS	-	-	-	-	-	Del	-	D	168351744	168351746	1	121	1065.13	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	10	10	11	14	35	34	35	34	11	14	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694543883	1	176685125	TATTA	T	480	PASS	PAPPA2	CCDS41438.1	r.?	-	-	Del	intronic	D	176685125	176685140	4	25	428.943	-	-	3	1	1	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	4	4	5	6	17	19	17	19	5	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694545178	1	180006797	A	AT	480	PASS	CEP350	CCDS1336.1	r.?	-	-	Ins	intronic	I	180006797	180006805	1	16	422.32	-	-	7	1	1	CEP350|CCDS1336.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP350|CCDS1336.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	1	7	4	12	39	52	39	52	4	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694547308	1	185603198	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	185603198	185603207	1	15	306.656	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	18	0	0	./.	2	4	8	7	39	43	39	44	8	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694549976	1	192441626	TTTG	T	300	PASS	-	-	-	-	-	Del	-	D	192441626	192441653	3	6	260.865	-	-	8	1	-	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	0	5	0	5	38	48	38	48	0	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694551430	1	196066008	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	196066008	196066018	1	12	265.079	-	-	9	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	3	2	3	50	43	52	44	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694551837	1	197417203	G	GT	300	PASS	CRB1	CCDS1390.1	r.?	-	-	Ins	intronic	I	197417203	197417213	1	10	265.079	-	-	9	1	1	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CRB1|CCDS1390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	1	4	3	58	46	60	47	4	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694551954	1	197712948	G	GA	300	PASS	DENND1B	CCDS44289.1	r.?	-	-	Ins	intronic	I	197712948	197712958	1	10	260.865	-	-	9	1	1	DENND1B|CCDS44289.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DENND1B|CCDS44289.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	1	4	1	5	44	43	44	43	1	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694552448	1	199130164	GGAAGGAA	G	267	PASS	-	-	-	-	-	Del	-	D	199130164	199130180	7	7	321.105	-	-	2	1	-	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	6	0	1	0	43	26	43	26	6	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694557658	1	211692174	CT	C	720	PASS	-	-	-	-	-	Del	-	D	211692174	211692176	1	45	642.812	-	-	1	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	8	4	10	34	39	34	39	4	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694565728	1	231420002	CCT	C	1020	PASS	-	-	-	-	-	Del	-	D	231420002	231420005	2	70	907.891	-	-	1	1	1	-	-	./.	0	0	0	0	14	3	14	3	0	0	./.	13	4	17	6	27	10	27	10	17	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694566871	1	234356039	GGT	G	269	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	intronic	D	234356039	234356057	2	12	262.671	-	-	8	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	2	3	2	3	40	45	40	45	2	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694567541	1	235615200	A	AT	300	PASS	B3GALNT2	CCDS1606.1	r.?	-	-	Ins	intronic	I	235615200	235615210	1	12	260.865	-	-	9	1	1	B3GALNT2|CCDS1606.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	B3GALNT2|CCDS1606.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	12	21	13	0	0	./.	2	3	2	3	35	40	36	41	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694568966	1	238278931	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	238278931	238278941	1	6	265.079	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	19	16	0	0	./.	0	5	0	5	40	52	41	52	0	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694569118	1	238691383	AT	A	960	PASS	-	-	-	-	-	Del	-	D	238691383	238691388	1	72	857.284	-	-	4	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	11	7	15	47	59	47	59	7	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694573699	1	247988642	CT	C	809	PASS	-	-	-	-	-	Del	-	D	247988642	247988652	1	64	746.436	-	-	9	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	7	7	8	11	27	50	27	50	8	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694575514	10	3418177	CTG	C	900	PASS	-	-	-	-	-	Del	-	D	3418177	3418181	2	66	806.639	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	10	5	11	8	24	25	24	25	11	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694578548	10	10730981	AG	A	300	PASS	-	-	-	-	-	Del	-	D	10730981	10730983	1	10	269.281	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	4	1	5	1	29	34	29	34	5	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694579145	10	12233308	G	GGAGGTGGAGCTTGCA	290	PASS	NUDT5	CCDS7089.1	r.?	-	-	Ins	intronic	I	12233308	12233325	15	35	443.436	-	-	1	1	1	NUDT5|CCDS7089.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NUDT5|CCDS7089.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	6	4	4	4	40	27	42	29	6	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694580788	10	15864334	TAC	T	300	PASS	FAM188A	CCDS7110.1	r.?	-	-	Del	intronic	D	15864334	15864349	2	12	269.281	-	-	7	1	1	FAM188A|CCDS7110.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM188A|CCDS7110.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	2	3	2	31	35	31	35	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694601706	10	73624490	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	73624490	73624500	1	10	266.271	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	1	4	1	4	23	35	24	35	1	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694603192	10	77725614	TC	T	1140	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	77725614	77725618	1	90	1022.06	-	-	3	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	14	8	15	19	29	19	29	8	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694604052	10	80692502	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	80692502	80692520	2	10	259.046	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	4	1	37	17	37	17	4	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694610227	10	98782812	T	TG	360	PASS	SLIT1	CCDS7453.1	r.?	-	-	Ins	intronic	I	98782812	98782813	1	16	319.525	-	-	0	1	1	SLIT1|CCDS7453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLIT1|CCDS7453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	4	3	26	35	28	35	4	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694614543	10	111292456	T	TG	293	PASS	-	-	-	-	-	Ins	-	I	111292456	111292460	1	10	263.862	-	-	3	1	1	-	-	./.	0	0	0	0	11	27	11	28	0	0	./.	1	4	1	4	27	38	27	38	1	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694615061	10	112868579	CCAAAG	C	747	PASS	-	-	-	-	-	Del	-	D	112868579	112868587	5	55	753.384	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	10	4	11	10	29	24	29	24	11	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694620221	10	127117219	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	127117219	127117235	2	10	269.281	-	-	7	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	1	4	1	36	27	36	27	4	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694625172	11	6302626	C	CA	538	PASS	-	-	-	-	-	Ins	-	I	6302626	6302632	1	35	531.127	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	15	0	0	./.	4	6	6	6	29	24	29	24	6	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694625536	11	7315474	T	TG	1080	PASS	SYT9	CCDS7778.1	r.?	-	-	Ins	intronic	I	7315474	7315482	1	100	957.955	-	-	7	1	1	SYT9|CCDS7778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYT9|CCDS7778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	9	9	13	13	44	39	45	39	13	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694626746	11	10175496	A	AT	1080	PASS	SBF2	CCDS31427.1	r.?	-	-	Ins	intronic	I	10175496	10175505	1	84	960.363	-	-	8	1	1	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	14	13	0	0	./.	5	13	8	20	33	34	33	34	8	20	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694628231	11	14366952	ATAAC	A	1076	PASS	RRAS2	CCDS7814.1	r.?	-	-	Del	intronic	D	14366952	14366960	4	121	1079.11	-	-	1	1	1	RRAS2|CCDS7814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RRAS2|CCDS7814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	19	24	19	0	0	./.	10	10	13	12	34	33	34	33	13	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694639525	11	46888479	G	GA	269	PASS	LRP4	CCDS31478.1	r.?	-	-	Ins	intronic	I	46888479	46888489	1	12	256.533	-	-	9	1	-	LRP4|CCDS31478.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP4|CCDS31478.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	17	14	0	0	./.	3	2	2	2	36	32	37	32	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694641595	11	55558522	AATTT	A	480	PASS	OR5D14	CCDS31508.1	r.?	-	-	Del	upstream	D	55558522	55558531	4	21	431.645	-	-	2	1	1	OR5D14|CCDS31508.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	OR5D14|CCDS31508.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	14	14	14	0	0	./.	6	2	6	7	23	29	23	29	6	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694645416	11	66418593	C	CG	300	PASS	RBM4	CCDS41676.1	r.?	-	-	Ins	downstream	I	66418593	66418602	1	10	266.166	-	-	8	1	1	RBM4|CCDS41676.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	RBM4|ENST00000396053|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	1	7	3	21	18	21	19	7	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694647652	11	73242188	GCTTCCTAGAGAGTCTCATTTCACTAC	G	609	PASS	FAM168A	CCDS41689.1	r.?	-	-	Del	intronic	D	73242188	73242215	26	132	1133.07	-	-	1	1	1	FAM168A|CCDS41689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM168A|CCDS41689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	11	10	8	6	30	27	33	31	11	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694649243	11	77276154	GTC	G	267	PASS	RNU7-59P	ENST00000459101	r.?	-	-	Del	downstream	D	77276154	77276174	2	15	323.734	-	-	9	1	-	RNU7-59P|ENST00000459101|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	RNU7-59P|ENST00000459101|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	26	11	26	11	0	0	./.	2	4	3	7	112	111	112	111	3	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694649518	11	77499559	AAG	A	358	PASS	RSF1	CCDS8253.1	r.?	-	-	Del	intronic	D	77499559	77499563	2	8	365.046	-	-	1	1	1	RSF1|CCDS8253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSF1|CCDS8253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	7	0	17	0	165	100	166	100	17	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694650907	11	79741140	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	79741140	79741144	2	8	368.658	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	7	0	10	0	108	71	108	71	12	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694650972	11	79842206	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	79842206	79842208	1	18	373.475	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	6	7	116	133	118	133	6	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694651033	11	79951296	G	GA	929	PASS	-	-	-	-	-	Ins	-	I	79951296	79951301	1	77	849.442	-	-	4	1	1	-	-	./.	0	0	0	0	19	13	19	14	0	0	./.	10	6	14	9	138	134	140	134	14	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694651574	11	80903383	TC	T	780	PASS	-	-	-	-	-	Del	-	D	80903383	80903387	1	56	700.821	-	-	3	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	6	7	9	8	123	96	123	96	9	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694666283	11	133121472	TG	T	480	PASS	ENSG00000183715	CCDS31722.1	r.?	-	-	Del	intronic	D	133121472	133121482	1	24	431.645	-	-	9	1	1	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	5	7	8	16	16	16	16	7	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694677963	12	29202633	AC	A	300	PASS	-	-	-	-	-	Del	-	D	29202633	29202635	1	12	269.773	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	4	2	29	37	29	37	4	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694680063	12	34283930	G	GA	660	PASS	AC046130.1	ENST00000501954	r.?	-	-	Ins	intronic	I	34283930	34283937	1	30	586.877	-	-	6	1	1	AC046130.1|ENST00000501954|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC046130.1|ENST00000501954|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	9	2	12	2	34	14	34	14	12	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694680300	12	37909914	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	37909914	37909918	2	6	268.569	-	-	1	1	-	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	5	0	3	0	27	24	27	24	5	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694684724	12	51177611	CTG	C	480	PASS	ATF1	CCDS8803.1	r.?	-	-	Del	intronic	D	51177611	51177615	2	24	427.422	-	-	1	1	1	ATF1|CCDS8803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATF1|CCDS8803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	5	3	12	6	28	19	28	19	12	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694690879	12	69259418	ACT	A	300	PASS	CPM	CCDS8987.1	r.?	-	-	Del	intronic	D	69259418	69259438	2	12	265.558	-	-	9	1	-	CPM|CCDS8987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPM|CCDS8987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	6	2	29	26	29	26	6	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694695089	12	82101224	A	AGCAAT	745	PASS	-	-	-	-	-	Ins	-	I	82101224	82101234	5	110	967.941	-	-	1	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	10	9	10	9	30	40	30	40	10	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694695956	12	84632909	C	CG	600	PASS	-	-	-	-	-	Ins	-	I	84632909	84632910	1	35	533.525	-	-	0	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	6	4	11	18	27	20	28	4	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694696298	12	85518544	GT	G	1160	PASS	LRRIQ1	CCDS31865.1	r.4366delU	c.?	p.?	Del	3'UTR variant	D	85518544	85518552	1	117	1077.89	-	-	7	1	1	LRRIQ1|CCDS31865.1|r.4366delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	LRRIQ1|CCDS31865.1|r.4366delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	22	15	22	0	0	./.	8	12	11	13	21	28	21	28	11	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694696390	12	86043157	GC	G	840	PASS	-	-	-	-	-	Del	-	D	86043157	86043163	1	55	755.364	-	-	5	1	1	-	-	./.	0	0	0	0	10	30	10	30	0	0	./.	4	10	7	15	23	32	23	32	7	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694698592	12	93224298	AT	A	360	PASS	EEA1	CCDS31874.1	r.?	-	-	Del	intronic	D	93224298	93224301	1	15	320.115	-	-	2	1	1	EEA1|CCDS31874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEA1|CCDS31874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	2	4	2	37	26	37	26	4	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694698897	12	93920805	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	93920805	93920825	2	12	269.773	-	-	9	1	-	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	3	5	42	30	42	30	3	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694707413	12	117876827	GC	G	960	PASS	-	-	-	-	-	Del	-	D	117876827	117876830	1	77	851.834	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	10	6	12	12	27	35	27	35	12	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694710409	12	125182915	CTTA	C	720	PASS	-	-	-	-	-	Del	-	D	125182915	125182923	3	45	647.455	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	8	8	13	31	33	31	33	8	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694711506	12	128058694	ATTTC	A	449	PASS	-	-	-	-	-	Del	-	D	128058694	128058704	4	24	423.208	-	-	2	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	5	3	6	5	22	22	22	22	6	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694713316	12	132360019	G	GT	438	PASS	-	-	-	-	-	Ins	-	I	132360019	132360026	1	25	426.82	-	-	6	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	4	4	8	8	36	28	36	28	8	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694713474	12	132949451	G	GAC	420	PASS	ENSG00000236291	ENST00000446891	r.?	-	-	Ins	intronic	I	132949451	132949453	2	18	365.039	-	-	0	1	1	ENSG00000236291|ENST00000446891|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000236291|ENST00000446891|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	5	3	6	16	21	16	21	3	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694734412	13	84399885	AG	A	1200	PASS	-	-	-	-	-	Del	-	D	84399885	84399887	1	120	1081.01	-	-	1	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	11	9	11	11	32	29	32	29	11	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694734818	13	85683318	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	85683318	85683328	1	12	267.091	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	3	2	3	33	35	38	35	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694735444	13	87475343	C	CA	1080	PASS	-	-	-	-	-	Ins	-	I	87475343	87475348	1	91	961.888	-	-	4	1	1	-	-	./.	0	0	0	0	35	22	35	22	0	0	./.	12	6	14	7	30	32	31	33	14	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694744342	13	112830305	GC	G	300	PASS	-	-	-	-	-	Del	-	D	112830305	112830309	1	6	270.703	-	-	3	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	1	0	18	26	23	26	6	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694746823	14	23666371	T	TA	840	PASS	C14orf164	ENST00000399910	r.?	-	-	Ins	intronic	I	23666371	23666378	1	60	740.974	-	-	6	1	1	C14orf164|ENST00000399910|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C14orf164|ENST00000399910|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	9	5	9	7	32	19	32	20	9	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694754660	14	46136218	A	AT	960	PASS	-	-	-	-	-	Ins	-	I	46136218	46136228	1	80	856.461	-	-	9	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	9	7	11	12	38	35	38	35	11	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694755912	14	50036444	TA	T	540	PASS	-	-	-	-	-	Del	-	D	50036444	50036447	1	28	487.178	-	-	2	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	6	3	7	9	22	35	22	35	7	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694757681	14	54243643	A	AT	960	PASS	-	-	-	-	-	Ins	-	I	54243643	54243644	1	65	851.042	-	-	0	1	1	-	-	./.	0	0	0	0	17	15	17	16	0	0	./.	12	4	18	5	40	27	40	28	18	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694762678	14	68262654	T	TA	1080	PASS	ZFYVE26	CCDS9788.1	r.?	-	-	Ins	intronic	I	68262654	68262663	1	84	959.906	-	-	8	1	1	ZFYVE26|CCDS9788.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFYVE26|CCDS9788.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	19	15	20	0	0	./.	5	13	10	17	33	35	33	35	10	17	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694766766	14	78660812	T	TAA	960	PASS	-	-	-	-	-	Ins	-	I	78660812	78660813	2	80	846.828	-	-	0	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	9	7	9	13	21	37	22	37	9	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694767782	14	82057233	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	82057233	82057251	2	10	270.654	-	-	8	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	1	4	1	26	25	26	25	4	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694768246	14	83644441	TA	T	1260	PASS	-	-	-	-	-	Del	-	D	83644441	83644443	1	126	1134.94	-	-	1	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	8	13	11	13	33	28	33	28	11	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694768291	14	83776071	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	83776071	83776075	1	60	749.403	-	-	3	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	5	9	6	10	26	36	27	36	6	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694769026	14	85856173	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	85856173	85856182	1	40	588.817	-	-	8	1	1	-	-	./.	0	0	0	0	30	13	30	15	0	0	./.	7	4	13	9	34	29	34	29	13	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694769951	14	88710264	TTCAGTAA	T	377	PASS	KCNK10	CCDS9881.1	r.?	-	-	Del	intronic	D	88710264	88710272	7	50	703.701	-	-	1	1	1	KCNK10|CCDS9881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNK10|CCDS9881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	4	9	8	11	19	34	19	34	8	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694776388	14	107002699	GA	G	929	PASS	-	-	-	-	-	Del	-	D	107002699	107002701	1	81	863.686	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	8	8	14	14	31	39	31	39	14	14	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694777422	15	20857181	TTTATCCAACATTTGTA	T	493	PASS	-	-	-	-	-	Del	-	D	20857181	20857198	16	90	918.444	-	-	1	1	1	-	-	./.	0	0	0	0	57	58	57	58	0	0	./.	9	8	9	8	151	196	151	196	9	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694778457	15	23086364	GGCC	G	387	PASS	NIPA1	CCDS10011.1	r.60_62delGGC	c.45_47delGGC	p.A16delA	Del	inframe	D	23086364	23086391	3	24	411.42	-	-	8	1	-	NIPA1|CCDS10011.1|r.60_62delGGC|c.45_47delGGC|p.A16delA|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	NIPA1|CCDS10011.1|r.60_62delGGC|c.45_47delGGC|p.A16delA|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	8	4	8	4	0	0	./.	3	5	6	7	16	18	16	18	6	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694780562	15	28206055	A	AG	480	PASS	OCA2	CCDS10020.1	r.?	-	-	Ins	intronic	I	28206055	28206056	1	24	419.849	-	-	0	1	1	OCA2|CCDS10020.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OCA2|CCDS10020.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	14	12	0	0	./.	5	3	6	3	54	31	55	31	6	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694784226	15	37136991	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	37136991	37137000	1	42	588.054	-	-	8	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	5	6	7	7	46	42	46	43	7	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694784374	15	37471799	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	37471799	37471809	1	12	267.297	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	15	0	0	./.	3	2	3	3	54	50	54	51	3	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694785245	15	39878796	AACTG	A	329	PASS	THBS1	CCDS32194.1	r.?	-	-	Del	intronic	D	39878796	39878804	4	15	309.318	-	-	1	1	1	THBS1|CCDS32194.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THBS1|CCDS32194.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	4	2	37	28	38	28	5	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694785407	15	40263936	T	TA	780	PASS	EIF2AK4	CCDS42016.1	r.?	-	-	Ins	intronic	I	40263936	40263946	1	56	687.748	-	-	9	1	1	EIF2AK4|CCDS42016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EIF2AK4|CCDS42016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	7	6	15	12	46	37	46	38	15	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694789190	15	48925306	G	GA	840	PASS	FBN1	CCDS32232.1	r.?	-	-	Ins	intronic	I	48925306	48925314	1	60	747.831	-	-	7	1	1	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	9	5	11	7	63	49	63	49	11	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694806482	15	90412817	AAG	A	360	PASS	AP3S2	CCDS10357.1	r.?	-	-	Del	intronic	D	90412817	90412821	2	7	314.134	-	-	1	1	-	AP3S2|CCDS10357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3S2|CCDS10357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	6	0	14	0	41	19	41	19	14	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694807017	15	91315025	T	TA	720	PASS	BLM	CCDS10363.1	r.?	-	-	Ins	intronic	I	91315025	91315034	1	48	640.912	-	-	8	1	1	BLM|CCDS10363.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BLM|CCDS10363.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	7	9	11	54	37	55	39	9	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694809833	15	98221043	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	98221043	98221050	1	56	694.973	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	15	17	0	0	./.	7	6	13	9	42	42	43	42	13	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694811007	15	100939311	T	TG	300	PASS	LASS3	CCDS10384.1	r.?	-	-	Ins	downstream	I	100939311	100939312	1	6	266.093	-	-	0	1	-	LASS3|CCDS10384.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	LASS3|CCDS10384.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	10	13	10	13	0	0	./.	0	5	2	5	29	42	30	42	2	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694813507	16	5264314	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	5264314	5264321	1	84	960.022	-	-	6	1	1	-	-	./.	0	0	0	0	27	17	28	17	0	0	./.	5	13	6	19	21	43	22	43	6	19	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694838067	16	77318509	C	CT	720	PASS	ADAMTS18	CCDS10926.1	r.?	-	-	Ins	intronic	I	77318509	77318511	1	49	640.818	-	-	1	1	1	ADAMTS18|CCDS10926.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS18|CCDS10926.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	6	6	13	10	30	25	30	26	13	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694842110	16	88473584	G	GCGGCTCAGAGCTCCCAAAGGGGTGAGGTTGGGCTGGGCCCCCCAGGGTGGGAGCA	261	PASS	-	-	-	-	-	Ins	-	I	88473584	88473639	55	24	188.915	-	-	0	1	1	-	-	./.	0	0	0	0	10	24	10	24	0	0	./.	2	7	0	0	37	36	39	43	2	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694846066	17	7683672	T	TC	960	PASS	DNAH2	CCDS32551.1	r.?	-	-	Ins	intronic	I	7683672	7683677	1	80	844.821	-	-	4	1	1	DNAH2|CCDS32551.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH2|CCDS32551.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	7	9	12	12	36	31	37	32	12	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694848775	17	14344943	TAC	T	1018	PASS	-	-	-	-	-	Del	-	D	14344943	14344947	2	96	972.85	-	-	1	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	11	7	12	13	34	31	34	31	12	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694852708	17	25640081	A	AG	420	PASS	WSB1	CCDS11220.1	r.2268_2269insg	c.?	p.?	Ins	3'UTR variant	I	25640081	25640082	1	14	365.319	-	-	0	1	1	WSB1|CCDS11220.1|r.2268_2269insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	WSB1|CCDS11220.1|r.2268_2269insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	9	14	11	0	0	./.	6	1	7	4	30	30	30	30	7	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694866309	17	59632856	A	AT	1349	PASS	-	-	-	-	-	Ins	-	I	59632856	59632866	1	144	1228.8	-	-	9	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	15	8	16	11	42	41	43	41	16	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694866803	17	60488053	AAG	A	360	PASS	ENSG00000172421	CCDS45751.1	r.?	-	-	Del	intronic	D	60488053	60488072	2	12	324.484	-	-	9	1	1	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	5	1	5	2	41	25	41	25	5	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694867138	17	61139022	G	GT	300	PASS	TANC2	CCDS45754.1	r.?	-	-	Ins	intronic	I	61139022	61139032	1	12	267.393	-	-	9	1	1	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	3	2	3	2	43	45	43	45	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694867675	17	62347038	TG	T	660	PASS	-	-	-	-	-	Del	-	D	62347038	62347041	1	42	592.479	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	6	7	10	41	38	41	38	7	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694872371	17	72634816	TG	T	300	PASS	-	-	-	-	-	Del	-	D	72634816	72634818	1	6	263.781	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	0	7	1	42	33	42	33	7	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694880635	18	12105819	G	GA	960	PASS	ANKRD62	ENST00000314074	r.?	-	-	Ins	intronic	I	12105819	12105827	1	77	858.199	-	-	7	1	1	ANKRD62|ENST00000314074|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD62|ENST00000314074|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	23	19	24	0	0	./.	6	10	8	13	19	26	19	26	8	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694883321	18	22317558	GCT	G	840	PASS	-	-	-	-	-	Del	-	D	22317558	22317565	2	64	756.945	-	-	3	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	7	7	11	9	23	25	23	25	11	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694892129	18	54778104	AC	A	780	PASS	-	-	-	-	-	Del	-	D	54778104	54778112	1	56	699.093	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	7	6	12	11	20	21	20	21	12	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694893378	18	58871546	T	TC	749	PASS	-	-	-	-	-	Ins	-	I	58871546	58871548	1	50	696.685	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	9	6	11	20	25	20	26	6	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694898021	18	73137335	G	GA	900	PASS	C18orf62	CCDS32845.1	r.?	-	-	Ins	intronic	I	73137335	73137345	1	72	802.755	-	-	9	1	1	C18orf62|CCDS32845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C18orf62|CCDS32845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	7	8	12	11	24	27	24	27	12	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694898291	18	74175899	CAGA	C	480	PASS	ZNF516	ENST00000443185	r.?	-	-	Del	upstream	D	74175899	74175909	3	21	433.916	-	-	3	1	1	ZNF516|ENST00000443185|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZNF516|ENST00000217537|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	6	2	7	3	20	17	20	17	7	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694909886	19	22330947	CTTAAA	C	629	PASS	-	-	-	-	-	Del	-	D	22330947	22330959	5	40	595.954	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	7	4	8	5	19	28	19	28	8	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694910415	19	23400026	G	GA	327	PASS	ZNF724P	ENST00000418100	r.?	-	-	Ins	downstream	I	23400026	23400034	1	18	374.427	-	-	7	1	1	ZNF724P|ENST00000418100|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF724P|ENST00000418100|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	17	16	17	0	0	./.	5	2	8	4	25	23	26	23	8	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694916499	19	41732839	C	CA	900	PASS	AXL	CCDS12575.1	r.?	-	-	Ins	intronic	I	41732839	41732849	1	70	801.828	-	-	9	1	1	AXL|CCDS12575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AXL|CCDS12575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	9	6	14	11	42	26	42	26	14	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694920869	19	51881981	ATAT	A	629	PASS	LIM2	CCDS12831.1	r.?	-	-	Del	downstream	D	51881981	51881989	3	36	595.352	-	-	2	1	1	LIM2|CCDS12831.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LIM2|CCDS12831.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	14	12	14	0	0	./.	3	8	5	9	17	40	17	40	5	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694921812	19	53821848	CAG	C	1200	PASS	-	-	-	-	-	Del	-	D	53821848	53821852	2	112	1081.14	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	7	13	8	13	27	28	27	28	8	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694923749	19	57922924	AGCTCCTGTCAGGGACCTGCACGTGCGAG	A	464	PASS	ZNF17	CCDS42636.1	r.?	-	-	Del	intronic	D	57922924	57922956	28	72	866.24	-	-	1	1	1	ZNF17|CCDS42636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF17|CCDS42636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	5	11	4	8	12	30	13	33	5	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694924949	2	2204435	TAG	T	300	PASS	MYT1L	CCDS46222.1	r.?	-	-	Del	intronic	D	2204435	2204452	2	12	266.697	-	-	8	1	1	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	2	3	2	3	23	40	23	40	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694932936	2	26521781	TC	T	300	PASS	-	-	-	-	-	Del	-	D	26521781	26521783	1	6	268.503	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	18	11	0	0	./.	0	5	5	7	25	23	26	23	5	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694937188	2	37978554	A	AG	260	PASS	-	-	-	-	-	Ins	-	I	37978554	37978558	1	15	317.989	-	-	3	1	1	-	-	./.	0	0	0	0	31	27	32	27	0	0	./.	4	2	6	5	60	42	61	42	6	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694950273	2	76921622	CACTT	C	987	PASS	-	-	-	-	-	Del	-	D	76921622	76921631	4	100	962.396	-	-	2	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	9	9	12	11	27	28	27	28	12	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694951568	2	80918377	TG	T	328	PASS	-	-	-	-	-	Del	-	D	80918377	80918379	1	49	644.407	-	-	1	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	6	6	9	11	27	35	28	35	10	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694951657	2	81360757	A	AT	1080	PASS	-	-	-	-	-	Ins	-	I	81360757	81360767	1	91	953.967	-	-	9	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	6	12	7	13	26	26	26	26	7	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694954475	2	90480394	A	AT	462	PASS	-	-	-	-	-	Ins	-	I	90480394	90480403	1	28	477.285	-	-	8	1	1	-	-	./.	0	0	0	0	34	59	34	59	0	0	./.	3	6	3	8	62	116	62	118	3	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694954601	2	91686760	TA	T	259	PASS	-	-	-	-	-	Del	-	D	91686760	91686763	1	8	375.302	-	-	2	1	1	-	-	./.	0	0	0	0	12	22	12	23	0	0	./.	7	0	14	1	47	38	47	44	14	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694960028	2	109379355	CTA	C	664	PASS	RANBP2	CCDS2079.1	r.?	-	-	Del	intronic	D	109379355	109379360	2	77	859.209	-	-	2	1	1	RANBP2|CCDS2079.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP2|CCDS2079.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	11	26	11	0	0	./.	6	10	8	13	36	39	36	39	8	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694962315	2	116833429	CA	C	1140	PASS	-	-	-	-	-	Del	-	D	116833429	116833431	1	110	1020.31	-	-	1	1	1	-	-	./.	0	0	0	0	8	24	8	24	0	0	./.	9	10	13	12	28	21	28	21	13	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694964708	2	123819660	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	123819660	123819668	1	12	265.493	-	-	7	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	2	3	6	3	37	30	38	30	6	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694966564	2	129267097	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	129267097	129267115	2	10	268.503	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	4	1	4	25	29	25	29	1	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694970852	2	140335590	C	CA	960	PASS	-	-	-	-	-	Ins	-	I	140335590	140335596	1	65	848.974	-	-	5	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	12	6	15	32	33	32	33	6	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694977074	2	158852371	G	GT	300	PASS	UPP2	CCDS46435.1	r.?	-	-	Ins	intronic	I	158852371	158852381	1	10	252.247	-	-	9	1	1	UPP2|CCDS46435.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UPP2|CCDS46435.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	25	16	25	0	0	./.	1	4	3	5	36	38	37	39	3	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694977178	2	159213792	T	TA	300	PASS	CCDC148	CCDS33304.1	r.?	-	-	Ins	intronic	I	159213792	159213802	1	10	264.891	-	-	9	1	1	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	4	1	5	9	36	22	38	23	5	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694977395	2	159716208	T	TG	569	PASS	DAPL1	ENST00000343761	r.?	-	-	Ins	intronic	I	159716208	159716215	1	35	528.577	-	-	6	1	1	DAPL1|ENST00000343761|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAPL1|ENST00000343761|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	4	6	7	7	28	29	28	29	7	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694978434	2	162291838	AT	A	300	PASS	-	-	-	-	-	Del	-	D	162291838	162291848	1	10	268.503	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	1	4	1	33	24	33	24	4	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694983550	2	177524989	AC	A	480	PASS	-	-	-	-	-	Del	-	D	177524989	177524994	1	24	429.605	-	-	4	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	3	6	3	31	26	31	26	6	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694985911	2	184650831	TC	T	840	PASS	-	-	-	-	-	Del	-	D	184650831	184650833	1	55	751.808	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	10	4	14	6	33	30	33	30	14	6	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2694986462	2	186521133	AATT	A	540	PASS	-	-	-	-	-	Del	-	D	186521133	186521140	3	28	483.305	-	-	2	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	3	6	6	8	17	25	17	25	6	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695012062	20	14561518	CA	C	720	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14561518	14561520	1	45	650.294	-	-	1	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	4	8	6	9	41	41	41	41	6	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695021507	20	36643170	C	CT	300	PASS	KIAA0406	CCDS13300.1	r.?	-	-	Ins	intronic	I	36643170	36643180	1	6	266.741	-	-	9	1	1	KIAA0406|CCDS13300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA0406|CCDS13300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	5	0	5	0	54	39	54	39	5	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695022093	20	38379585	CA	C	927	PASS	-	-	-	-	-	Del	-	D	38379585	38379589	1	88	917.035	-	-	3	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	10	7	15	11	36	31	36	31	15	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695028091	20	52661761	A	AC	420	PASS	BCAS1	CCDS13444.1	r.?	-	-	Ins	intronic	I	52661761	52661762	1	18	366.695	-	-	0	1	-	BCAS1|CCDS13444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BCAS1|CCDS13444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	5	2	5	4	39	42	39	43	5	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695030565	20	59544970	TG	T	1020	PASS	-	-	-	-	-	Del	-	D	59544970	59544972	1	78	920.648	-	-	1	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	12	5	16	8	36	37	36	37	16	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695030968	20	60777921	CG	C	720	PASS	GTPBP5	CCDS13492.1	r.?	-	-	Del	downstream	D	60777921	60777926	1	45	648.488	-	-	4	1	1	GTPBP5|CCDS13492.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	GTPBP5|CCDS13492.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	10	13	10	13	0	0	./.	4	8	8	11	34	37	34	37	8	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695031738	20	62770062	TC	T	300	PASS	-	-	-	-	-	Del	-	D	62770062	62770064	1	6	261.323	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	0	12	0	25	31	25	31	12	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695036662	21	15572708	AAAG	A	1138	PASS	LIPI	CCDS13564.1	r.?	-	-	Del	intronic	D	15572708	15572717	3	112	1084.61	-	-	2	1	1	LIPI|CCDS13564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIPI|CCDS13564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	13	7	13	7	34	22	34	22	13	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695048982	21	47258754	GTTATAGCTTCAACTGAAATTCCTGCATTTGATTATGTAAAATACAAACATTTACATGATTCTAAAGTCAAAATTATTGCAAGGGCTATT	G	406	PASS	PCBP3	CCDS42974.2	r.?	-	-	Del	intronic	D	47258754	47258844	89	48	758.862	-	-	1	1	1	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	11	0	0	22	17	25	28	3	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695058026	22	38326875	AACTT	A	1105	PASS	MICALL1	CCDS13961.1	r.?	-	-	Del	intronic	D	38326875	38326880	4	120	1130.88	-	-	1	1	1	MICALL1|CCDS13961.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MICALL1|CCDS13961.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	14	7	17	8	39	21	39	22	17	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695059564	22	42198917	C	CA	420	PASS	MEI1	CCDS46718.1	r.?	-	-	Ins	downstream	I	42198917	42198925	1	14	376.758	-	-	7	1	-	MEI1|CCDS46718.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CCDC134|CCDS33654.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	1	6	2	7	5	27	5	27	2	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695070482	3	22491943	TCA	T	300	PASS	-	-	-	-	-	Del	-	D	22491943	22491962	2	12	265.988	-	-	9	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	3	3	4	24	26	24	26	3	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695077207	3	43481207	C	CA	1140	PASS	ANO10	CCDS2710.2	r.?	-	-	Ins	intronic	I	43481207	43481216	1	98	1009.55	-	-	8	1	1	ANO10|CCDS2710.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANO10|CCDS2710.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	6	13	8	18	32	42	32	43	8	18	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695079771	3	51037120	C	CA	900	PASS	DOCK3	CCDS46835.1	r.?	-	-	Ins	intronic	I	51037120	51037129	1	72	794.953	-	-	8	1	1	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	17	23	17	0	0	./.	8	7	10	10	37	41	37	41	10	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695084406	3	64594499	AAC	A	389	PASS	ADAMTS9	CCDS2903.1	r.?	-	-	Del	intronic	D	64594499	64594514	2	20	376.597	-	-	7	1	1	ADAMTS9|CCDS2903.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS9|CCDS2903.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	4	3	4	3	32	33	32	33	4	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695094202	3	94220615	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	94220615	94220625	1	45	636.565	-	-	9	1	1	-	-	./.	0	0	0	0	21	16	21	17	0	0	./.	8	4	11	9	35	28	35	28	11	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695094422	3	94962312	T	TA	869	PASS	-	-	-	-	-	Ins	-	I	94962312	94962321	1	66	797.964	-	-	8	1	1	-	-	./.	0	0	0	0	24	21	25	21	0	0	./.	10	5	12	14	28	36	29	36	12	14	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695108177	3	136282378	ACT	A	300	PASS	STAG1	CCDS3090.1	r.?	-	-	Del	intronic	D	136282378	136282398	2	12	267.794	-	-	9	1	-	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	2	3	4	4	29	36	29	36	4	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695123433	3	182211047	AG	A	869	PASS	-	-	-	-	-	Del	-	D	182211047	182211050	1	66	801.576	-	-	2	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	10	5	13	11	29	32	29	32	13	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695124014	3	183689099	G	GA	480	PASS	ABCC5	CCDS43176.1	r.?	-	-	Ins	intronic	I	183689099	183689104	1	21	425.581	-	-	4	1	1	ABCC5|CCDS43176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCC5|CCDS43176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	6	5	10	22	35	22	35	5	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695126305	3	189669241	CT	C	660	PASS	-	-	-	-	-	Del	-	D	189669241	189669244	1	42	591.796	-	-	2	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	6	5	10	9	25	27	25	27	10	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695129844	4	1262673	GT	G	900	PASS	-	-	-	-	-	Del	-	D	1262673	1262679	1	72	794.848	-	-	5	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	8	7	10	10	24	26	24	26	10	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695129897	4	1386811	AT	A	1080	PASS	CRIPAK	CCDS3349.1	r.?	-	-	Del	upstream	D	1386811	1386816	1	91	961.644	-	-	4	1	1	CRIPAK|CCDS3349.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CRIPAK|CCDS3349.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	9	14	9	0	0	./.	6	12	10	16	22	37	22	37	10	16	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695145015	4	49625745	AT	A	562	PASS	-	-	-	-	-	Del	-	D	49625745	49625747	1	100	968.266	-	-	1	1	1	-	-	./.	0	0	0	0	18	49	18	49	0	0	./.	9	9	12	9	33	85	33	86	12	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695145903	4	54802693	C	CT	540	PASS	AC110792.1	ENST00000511394	r.?	-	-	Ins	intronic	I	54802693	54802703	1	28	470.286	-	-	9	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	6	3	10	8	30	25	30	25	10	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695158583	4	90872904	T	TA	960	PASS	MMRN1	CCDS3635.1	r.3584+2_3584+3insa	c.3265+2_3265+3insA	p.?	Ins	ess splice	I	90872904	90872914	1	72	846.232	-	-	9	1	1	MMRN1|CCDS3635.1|r.3584+2_3584+3insa|c.3265+2_3265+3insA|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	MMRN1|CCDS3635.1|r.3584+2_3584+3insa|c.3265+2_3265+3insA|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	./.	0	0	0	0	20	15	20	15	0	0	./.	5	11	10	13	32	37	32	37	10	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695160728	4	97350976	GTT	G	1380	PASS	-	-	-	-	-	Del	-	D	97350976	97350980	2	150	1231.81	-	-	3	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	14	9	15	9	29	29	29	29	15	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695162665	4	103670261	G	GA	300	PASS	MANBA	CCDS3658.1	r.?	-	-	Ins	intronic	I	103670261	103670271	1	12	259.33	-	-	9	1	1	MANBA|CCDS3658.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MANBA|CCDS3658.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	2	3	27	40	28	41	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695165907	4	113889741	G	GT	300	PASS	ANK2	ENST00000506722	r.?	-	-	Ins	intronic	I	113889741	113889751	1	10	265.953	-	-	9	1	1	ANK2|ENST00000506722|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANK2|ENST00000506722|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	24	28	25	0	0	./.	4	1	4	2	42	39	42	39	4	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695166922	4	116883089	C	CA	960	PASS	-	-	-	-	-	Ins	-	I	116883089	116883098	1	77	851.048	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	10	6	12	9	29	27	30	27	12	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695167663	4	119443829	G	GT	254	PASS	-	-	-	-	-	Ins	-	I	119443829	119443839	1	12	265.953	-	-	9	1	1	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	3	2	3	2	38	48	39	48	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695168178	4	120754375	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	120754375	120754384	1	40	576.667	-	-	8	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	7	4	12	5	38	29	38	29	12	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695174031	4	137943830	C	CCT	569	PASS	-	-	-	-	-	Ins	-	I	137943830	137943831	2	20	517.456	-	-	0	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	1	9	0	2	16	26	17	27	1	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695187580	4	177377694	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	177377694	177377704	1	12	258.126	-	-	9	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	2	3	4	2	29	34	29	34	4	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695188992	4	180942147	CCTT	C	747	PASS	-	-	-	-	-	Del	-	D	180942147	180942154	3	63	753.096	-	-	2	1	1	-	-	./.	0	0	0	0	26	17	26	17	0	0	./.	6	8	7	12	29	31	29	31	7	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695202863	5	23666274	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	23666274	23666280	1	84	900.661	-	-	5	1	1	-	-	./.	0	0	0	0	19	20	19	21	0	0	./.	6	11	10	14	31	32	31	33	10	14	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695204641	5	28394668	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	28394668	28394676	1	72	798.95	-	-	7	1	1	-	-	./.	0	0	0	0	25	24	25	24	0	0	./.	7	8	9	13	35	40	35	42	9	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695209054	5	40124046	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	40124046	40124056	1	16	426.107	-	-	9	1	1	-	-	./.	0	0	0	0	17	3	17	3	0	0	./.	7	1	11	1	30	7	30	7	11	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695224276	5	91208512	TAG	T	300	PASS	-	-	-	-	-	Del	-	D	91208512	91208526	2	12	269.327	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	3	33	34	33	34	3	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695232869	5	119341851	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	119341851	119341869	2	12	269.327	-	-	8	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	2	3	2	43	39	43	39	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695241016	5	145502387	GAAATCTGGCATCTATCTGCCATATAAAACA	G	464	PASS	LARS	CCDS34265.1	r.?	-	-	Del	intronic	D	145502387	145502422	30	77	861.847	-	-	1	1	1	LARS|CCDS34265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARS|CCDS34265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	6	10	4	4	22	29	24	34	6	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695241325	5	146252768	TAGTA	T	389	PASS	PPP2R2B	CCDS4284.1	r.?	-	-	Del	intronic	D	146252768	146252780	4	20	377.058	-	-	2	1	1	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	3	4	3	4	30	20	30	20	3	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695247607	5	165162324	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	165162324	165162343	2	12	269.327	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	2	45	38	45	38	4	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695248340	5	167389164	CCTT	C	838	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167389164	167389172	3	72	807.981	-	-	2	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	8	7	11	8	28	26	28	26	11	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695251718	5	176700729	C	CAGCT	507	PASS	NSD1	CCDS4412.1	r.5611_5612insagcu	c.5566_5567insAGCT	p.Q1858fs*8	Ins	frameshift	I	176700729	176700734	4	36	510.959	-	-	1	1	1	NSD1|CCDS4412.1|r.5611_5612insagcu|c.5566_5567insAGCT|p.Q1858fs*8|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	NSD1|CCDS4412.1|r.5611_5612insagcu|c.5566_5567insAGCT|p.Q1858fs*8|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	11	23	11	23	0	0	./.	5	5	7	9	31	40	31	41	7	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695258550	6	13724069	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	13724069	13724087	2	10	269.537	-	-	8	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	1	4	1	5	27	42	27	42	1	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695263645	6	26225485	GGCGTGAAGAAGCCC	G	493	PASS	HIST1H3E	CCDS4596.1	r.104_117delGCGUGAAGAAGCCC	c.104_117delGCGTGAAGAAGCCC	p.G35fs*84	Del	frameshift	D	26225485	26225500	14	70	914.62	-	-	1	1	1	HIST1H3E|CCDS4596.1|r.104_117delGCGUGAAGAAGCCC|c.104_117delGCGTGAAGAAGCCC|p.G35fs*84|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HIST1H3E|CCDS4596.1|r.104_117delGCGUGAAGAAGCCC|c.104_117delGCGTGAAGAAGCCC|p.G35fs*84|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	11	13	11	0	0	./.	4	13	6	13	28	26	28	26	6	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695268615	6	37041376	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	37041376	37041386	1	36	533.054	-	-	9	1	1	-	-	./.	0	0	0	0	24	11	26	11	0	0	./.	5	5	9	12	31	42	31	42	9	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695269277	6	38765115	G	GA	960	PASS	DNAH8	CCDS4838.1	r.?	-	-	Ins	intronic	I	38765115	38765119	1	80	852.284	-	-	3	1	1	DNAH8|CCDS4838.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH8|CCDS4838.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	16	26	16	0	0	./.	7	9	12	10	34	32	34	32	12	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695271423	6	45157596	AC	A	1140	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Del	intronic	D	45157596	45157598	1	80	1023.64	-	-	1	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	4	15	7	19	26	39	26	39	7	19	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695274176	6	53849707	AT	A	269	PASS	C6orf142	ENST00000505762	r.?	-	-	Del	intronic	D	53849707	53849717	1	10	268.333	-	-	9	1	1	C6orf142|ENST00000505762|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf142|ENST00000505762|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	1	4	1	4	42	36	42	36	1	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695276842	6	62064563	ATTAT	A	431	PASS	-	-	-	-	-	Del	-	D	62064563	62064574	4	35	539.075	-	-	2	1	1	-	-	./.	0	0	0	0	20	27	20	27	0	0	./.	4	6	6	10	28	27	28	27	6	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695280277	6	71774963	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	71774963	71774973	1	12	264.119	-	-	9	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	2	3	2	4	31	23	31	24	2	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695280533	6	72696747	CAGA	C	687	PASS	RIMS1	CCDS47449.1	r.?	-	-	Del	intronic	D	72696747	72696756	3	54	700.797	-	-	2	1	1	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	8	5	9	7	29	27	29	27	9	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695287745	6	97970917	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	97970917	97970934	2	10	269.537	-	-	8	1	-	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	4	1	4	2	30	36	30	36	4	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695305436	6	167720944	C	CAGTTCCAGAGGATGGTTGAGAT	261	PASS	UNC93A	CCDS5300.1	r.?	-	-	Ins	intronic	I	167720944	167720945	22	28	362.347	-	-	0	1	1	UNC93A|CCDS5300.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNC93A|CCDS5300.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	6	3	0	0	14	6	20	8	6	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695312992	7	17585918	G	GA	1140	PASS	-	-	-	-	-	Ins	-	I	17585918	17585920	1	110	1012.11	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	18	13	0	0	./.	9	10	12	14	29	37	29	37	12	14	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695315755	7	25388635	C	CA	685	PASS	-	-	-	-	-	Ins	-	I	25388635	25388645	1	64	744.56	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	7	7	9	9	24	30	25	30	9	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695317181	7	29599320	TTG	T	300	PASS	PRR15	CCDS5421.1	r.?	-	-	Del	upstream	D	29599320	29599338	2	12	263.334	-	-	8	1	1	PRR15|CCDS5421.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PRR15|CCDS5421.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	22	20	22	20	0	0	./.	2	3	2	3	33	35	33	35	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695331433	7	68986805	CT	C	300	PASS	-	-	-	-	-	Del	-	D	68986805	68986815	1	12	269.355	-	-	9	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	2	3	2	3	32	42	32	42	2	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695336166	7	81735285	A	AT	660	PASS	CACNA2D1	CCDS5598.1	r.?	-	-	Ins	intronic	I	81735285	81735293	1	40	583.549	-	-	7	1	1	CACNA2D1|CCDS5598.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA2D1|CCDS5598.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	4	7	6	10	26	32	26	34	6	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695340589	7	95302028	GTAAAAA	G	406	PASS	-	-	-	-	-	Del	-	D	95302028	95302035	6	64	752.989	-	-	1	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	7	7	8	9	34	30	34	30	8	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695342862	7	101273435	AAG	A	329	PASS	MYL10	CCDS34713.1	r.?	-	-	Del	upstream	D	101273435	101273450	2	7	322.623	-	-	7	1	-	MYL10|CCDS34713.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MYL10|CCDS34713.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	11	14	11	0	0	./.	6	0	1	0	29	17	29	17	6	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695346223	7	110965713	C	CA	960	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Ins	intronic	I	110965713	110965721	1	72	848.689	-	-	7	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	10	0	0	./.	5	11	9	12	24	30	25	30	9	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695347935	7	116580037	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	116580037	116580043	2	6	269.355	-	-	2	1	-	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	5	0	14	3	38	25	38	25	14	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695347936	7	116580039	GAGAAAA	G	351	PASS	-	-	-	-	-	Del	-	D	116580039	116580051	6	20	377.096	-	-	1	1	-	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	3	0	0	39	25	39	25	4	3	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695350858	7	126177852	AC	A	480	PASS	GRM8	CCDS5794.1	r.?	-	-	Del	intronic	D	126177852	126177854	1	24	419.528	-	-	1	1	-	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	14	25	14	0	0	./.	3	5	4	8	37	27	37	27	4	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695351774	7	128877409	TG	T	360	PASS	AHCYL2	CCDS5812.1	r.?	-	-	Del	intronic	D	128877409	128877411	1	7	320.817	-	-	1	1	1	AHCYL2|CCDS5812.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHCYL2|CCDS5812.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	6	0	12	0	36	27	36	27	12	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695353050	7	131713115	G	GT	1229	PASS	-	-	-	-	-	Ins	-	I	131713115	131713121	1	126	1117.44	-	-	5	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	8	13	11	15	41	40	41	40	11	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695356602	7	141891402	CTA	C	300	PASS	ENSG00000204987	ENST00000477922	r.?	-	-	Del	intronic	D	141891402	141891418	2	10	269.355	-	-	7	1	1	ENSG00000204987|ENST00000477922|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000204987|ENST00000477922|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	5	1	32	22	32	22	5	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695357079	7	143583396	TG	T	629	PASS	FAM115A	CCDS5886.1	r.?	-	-	Del	intronic	D	143583396	143583399	1	30	591.978	-	-	2	1	1	FAM115A|CCDS5886.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM115A|CCDS5886.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	9	5	11	22	29	22	29	5	11	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695364111	8	3734303	TA	T	600	PASS	-	-	-	-	-	Del	-	D	3734303	3734309	1	32	539.745	-	-	5	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	7	3	10	5	34	28	34	28	10	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695376303	8	47784960	AAC	A	900	PASS	-	-	-	-	-	Del	-	D	47784960	47784964	2	72	808.413	-	-	1	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	8	7	11	10	35	31	35	31	11	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695378522	8	55030110	A	AT	1020	PASS	-	-	-	-	-	Ins	-	I	55030110	55030117	1	78	905.525	-	-	6	1	1	-	-	./.	0	0	0	0	16	19	16	20	0	0	./.	5	12	10	15	26	38	26	38	10	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695382173	8	68056001	TTGTCTGTAGTCTGTGTGCTTGCTAC	T	377	PASS	CSPP1	CCDS47870.1	r.?	-	-	Del	intronic	D	68056001	68056044	25	50	699.862	-	-	1	1	1	CSPP1|CCDS47870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSPP1|CCDS47870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	3	19	3	0	0	./.	4	9	3	8	43	38	44	39	4	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695383710	8	73024127	GT	G	1080	PASS	-	-	-	-	-	Del	-	D	73024127	73024135	1	96	971.541	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	11	7	17	8	32	22	32	22	17	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695384655	8	75942326	TTAAAA	T	896	PASS	CRISPLD1	CCDS6219.1	r.?	-	-	Del	intronic	D	75942326	75942336	5	90	917.566	-	-	1	1	1	CRISPLD1|CCDS6219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRISPLD1|CCDS6219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	8	9	9	9	29	28	29	28	9	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695385293	8	77961682	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	77961682	77961685	1	12	264.454	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	3	2	40	37	40	37	3	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695388179	8	87220912	ACT	A	1440	PASS	-	-	-	-	-	Del	-	D	87220912	87220915	2	168	1294.79	-	-	1	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	11	13	14	13	30	30	30	30	14	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695388613	8	88440974	CATAAGACATTTGTAAATGTTTATGTAA	C	290	PASS	-	-	-	-	-	Del	-	D	88440974	88441020	27	27	539.745	-	-	1	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	8	2	6	2	30	24	32	24	8	2	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695396008	8	111934460	AT	A	600	PASS	-	-	-	-	-	Del	-	D	111934460	111934462	1	32	538.541	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	7	13	8	33	23	33	23	13	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695401645	8	129809361	CTA	C	300	PASS	-	-	-	-	-	Del	-	D	129809361	129809377	2	6	269.872	-	-	7	1	-	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	5	0	32	27	32	27	5	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695405689	8	143017027	ACT	A	720	PASS	-	-	-	-	-	Del	-	D	143017027	143017034	2	40	647.092	-	-	3	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	9	5	10	21	32	21	32	5	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695414053	9	21277001	ATTC	A	418	PASS	-	-	-	-	-	Del	-	D	21277001	21277012	3	25	432.084	-	-	3	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	4	8	5	30	29	30	29	8	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695418385	9	34387069	AC	A	567	PASS	C9orf24	CCDS6555.1	r.?	-	-	Del	intronic	D	34387069	34387073	1	22	574.247	-	-	3	1	1	C9orf24|CCDS6555.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C9orf24|CCDS6555.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	10	6	12	27	22	27	22	6	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695428911	9	84477868	CT	C	716	PASS	-	-	-	-	-	Del	-	D	84477868	84477872	1	60	730.86	-	-	3	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	5	9	7	10	21	37	21	37	7	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695430288	9	89007673	AC	A	994	PASS	-	-	-	-	-	Del	-	D	89007673	89007675	1	99	972.188	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	8	10	10	13	32	30	32	30	10	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695432667	9	96901505	CCAT	C	476	PASS	-	-	-	-	-	Del	-	D	96901505	96901511	3	35	540.105	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	6	6	7	17	28	17	28	6	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695434527	9	102399733	TA	T	720	PASS	-	-	-	-	-	Del	-	D	102399733	102399735	1	48	648.126	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	5	7	10	10	27	39	27	39	10	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695436497	9	108371433	CA	C	960	PASS	FKTN	CCDS6766.1	r.?	-	-	Del	intronic	D	108371433	108371435	1	72	862.963	-	-	1	1	1	FKTN|CCDS6766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FKTN|CCDS6766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	5	11	12	15	31	34	31	34	12	15	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695447973	9	141071520	GTGTCTCAGAGCAGTTTACAGCAA	G	291	PASS	-	-	-	-	-	Del	-	D	141071520	141071547	23	12	593.513	-	-	1	1	1	-	-	./.	0	0	0	0	25	17	25	17	0	0	./.	11	0	8	0	31	22	33	22	11	0	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695451418	X	13835420	ATC	A	360	PASS	GPM6B	CCDS35206.1	r.40_41delGA	c.?	p.?	Del	5'UTR variant	D	13835420	13835440	2	12	324.212	-	-	9	1	-	GPM6B|CCDS35206.1|r.40_41delGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	GPM6B|CCDS35206.1|r.40_41delGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	11	17	11	17	0	0	./.	1	5	1	5	29	25	29	25	1	5	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695456109	X	31085295	CATATGTGGATATACACACATATACACACAT	C	329	PASS	FTHL17	CCDS14227.1	r.?	-	-	Del	downstream	D	31085295	31085328	30	12	324.212	-	-	1	1	-	FTHL17|CCDS14227.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FTHL17|CCDS14227.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	29	18	29	18	0	0	./.	5	1	0	0	54	53	54	53	5	1	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695460785	X	48738157	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	48738157	48738166	1	50	694.632	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	9	8	13	27	38	27	38	8	13	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695460961	X	49604638	GAAT	G	629	PASS	PAGE4	CCDS35274.1	r.?	-	-	Del	downstream	D	49604638	49604644	3	42	592.582	-	-	1	1	1	PAGE4|CCDS35274.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PAGE4|CCDS35274.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	23	15	23	15	0	0	./.	6	5	10	8	31	19	31	19	10	8	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695466736	X	78713581	CT	C	360	PASS	-	-	-	-	-	Del	-	D	78713581	78713591	1	12	322.406	-	-	9	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	1	5	2	9	31	35	31	35	2	9	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695468480	X	85464967	G	GA	840	PASS	DACH2	CCDS48140.1	r.?	-	-	Ins	intronic	I	85464967	85464976	1	55	748.065	-	-	8	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	15	15	0	0	./.	10	4	10	10	27	37	29	37	10	10	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695473572	X	103836806	A	AT	478	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Ins	intronic	I	103836806	103836815	1	30	473.674	-	-	8	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	5	4	8	4	25	25	25	25	8	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695475232	X	112185403	TTA	T	778	PASS	-	-	-	-	-	Del	-	D	112185403	112185407	2	55	756.494	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	10	4	14	7	28	34	28	34	14	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695478660	X	123335503	G	GA	809	PASS	-	-	-	-	-	Ins	-	I	123335503	123335513	1	63	731.809	-	-	9	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	6	8	10	12	24	41	25	42	10	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695478869	X	124274189	AG	A	958	PASS	-	-	-	-	-	Del	-	D	124274189	124274191	1	84	915.589	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	6	11	9	12	28	30	28	30	9	12	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695479907	X	128107972	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	128107972	128107978	1	28	479.695	-	-	5	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	3	6	7	7	26	25	28	25	7	7	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695480019	X	128636826	AAT	A	809	PASS	SMARCA1	CCDS14612.1	r.?	-	-	Del	intronic	D	128636826	128636832	2	48	754.688	-	-	2	1	1	SMARCA1|CCDS14612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCA1|CCDS14612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	11	5	17	27	37	27	37	5	17	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695480260	X	129637287	TC	T	257	PASS	-	-	-	-	-	Del	-	D	129637287	129637290	1	12	270.176	-	-	2	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	3	2	4	4	25	22	25	22	4	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695480763	X	132305166	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	132305166	132305186	2	10	268.37	-	-	9	1	-	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	1	4	1	4	27	23	27	23	1	4	1	1	1	1	1	1	1	1
2628846	PD13357a	PD13357b	2695484875	X	147537467	TA	T	300	PASS	-	-	-	-	-	Del	-	D	147537467	147537477	1	10	270.176	-	-	9	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	4	1	4	1	24	28	24	28	4	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695755194	1	27887474	CCT	C	298	PASS	AHDC1	CCDS30652.1	r.?	-	-	Del	intronic	D	27887474	27887491	2	15	318.147	-	-	8	1	1	AHDC1|CCDS30652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AHDC1|CCDS30652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	2	4	3	4	32	34	32	34	3	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695766024	1	60267262	CT	C	300	PASS	-	-	-	-	-	Del	-	D	60267262	60267272	1	6	267.531	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	0	5	0	5	31	40	31	40	0	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695767280	1	63587359	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	63587359	63587369	1	15	318.147	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	4	2	37	37	38	37	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695773784	1	83080904	AAGTTT	A	687	PASS	-	-	-	-	-	Del	-	D	83080904	83080911	5	54	697.146	-	-	1	1	1	-	-	./.	0	0	0	0	27	17	27	17	0	0	./.	8	5	10	9	41	28	41	28	10	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695775331	1	87496219	ACG	A	300	PASS	HS2ST1	CCDS711.1	r.?	-	-	Del	intronic	D	87496219	87496223	2	12	268.133	-	-	1	1	-	HS2ST1|CCDS711.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS2ST1|CCDS711.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	2	3	25	32	25	32	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695782420	1	108428281	AGTACTTACCTGATACAG	A	348	PASS	VAV3	CCDS785.1	r.?	-	-	Del	intronic	D	108428281	108428302	17	40	641.713	-	-	1	1	1	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	9	5	10	39	39	39	39	5	10	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695790654	1	147725746	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	147725746	147725765	2	20	375.386	-	-	9	1	1	-	-	./.	0	0	0	0	27	27	27	27	0	0	./.	4	3	6	3	94	72	94	72	6	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695793088	1	152927270	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	152927270	152927289	2	12	265.123	-	-	9	1	-	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	2	3	2	3	42	39	42	39	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695793184	1	153294089	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	153294089	153294099	1	12	318.147	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	5	1	6	1	41	49	43	49	6	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695803543	1	179259093	C	CT	569	PASS	SOAT1	CCDS1330.1	r.?	-	-	Ins	upstream	I	179259093	179259101	1	27	523.021	-	-	7	1	1	SOAT1|CCDS1330.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SOAT1|CCDS1330.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	6	15	6	16	0	0	./.	2	8	5	10	30	75	31	75	5	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695805072	1	182948890	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	182948890	182948900	1	50	689.319	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	9	4	9	6	47	39	47	40	9	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695807536	1	189412361	AAAGTT	A	658	PASS	-	-	-	-	-	Del	-	D	189412361	189412371	5	49	643.52	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	6	8	9	44	35	44	35	8	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695807813	1	190008099	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	190008099	190008105	1	48	742.344	-	-	5	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	11	4	13	43	49	44	49	4	13	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695807976	1	190507401	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	190507401	190507410	1	32	530.246	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	7	3	8	4	49	24	49	24	8	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695810343	1	196745157	TTTCACC	TTCTCC	365	PASS	CFHR3	CCDS30958.1	r.?	-	-	Complex	intronic	DI	196745158	196745163	6	40	0	-	-	0	1	1	CFHR3|CCDS30958.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CFHR3|CCDS30958.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	1	10	2	12	0	0	./.	7	4	0	0	17	15	28	19	7	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695812902	1	202457852	AAC	A	300	PASS	PPP1R12B	CCDS30973.1	r.?	-	-	Del	intronic	D	202457852	202457871	2	10	264.521	-	-	9	1	1	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	4	1	4	1	53	32	53	32	4	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695817524	1	213501949	C	CCACTG	387	PASS	-	-	-	-	-	Ins	-	I	213501949	213501955	5	9	403.124	-	-	1	1	1	-	-	./.	0	0	0	0	17	0	18	0	0	0	./.	8	0	9	0	40	1	41	1	10	0	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695821379	1	222894366	CTATGACTACTACTTT	C	438	PASS	C1orf58	CCDS1534.1	r.?	-	-	Del	intronic	D	222894366	222894386	15	77	855.618	-	-	1	1	1	C1orf58|CCDS1534.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf58|CCDS1534.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	10	6	10	6	41	30	41	30	10	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695822803	1	226091297	G	GA	300	PASS	PYCR2	ENST00000419724	r.?	-	-	Ins	intronic	I	226091297	226091306	1	12	265.123	-	-	8	1	1	PYCR2|ENST00000419724|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PYCR2|ENST00000419724|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	15	24	15	0	0	./.	2	3	0	1	45	48	45	49	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695824111	1	229089226	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	229089226	229089233	1	30	477.221	-	-	6	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	4	5	4	8	29	36	29	36	4	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695828864	1	239856659	ATC	A	420	PASS	CHRM3	CCDS1616.1	r.?	-	-	Del	intronic	D	239856659	239856677	2	20	373.58	-	-	8	1	1	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	3	4	3	43	39	43	39	4	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695829822	1	241733599	G	GT	1020	PASS	KMO	CCDS1618.1	r.?	-	-	Ins	intronic	I	241733599	241733606	1	70	900.816	-	-	6	1	1	KMO|CCDS1618.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KMO|CCDS1618.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	8	23	8	0	0	./.	13	4	15	7	65	35	66	36	15	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695834958	10	3706533	AAAG	A	269	PASS	-	-	-	-	-	Del	-	D	3706533	3706539	3	6	251.014	-	-	1	1	-	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	7	0	29	27	29	27	7	0	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695843425	10	24925190	A	AT	929	PASS	ARHGAP21	CCDS7144.2	r.?	-	-	Ins	intronic	I	24925190	24925192	1	77	842.98	-	-	1	1	1	ARHGAP21|CCDS7144.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP21|CCDS7144.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	19	16	0	0	./.	10	6	12	9	48	48	48	48	12	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695852384	10	45954424	CA	C	869	PASS	MARCH8	CCDS7213.1	r.?	-	-	Del	intronic	D	45954424	45954430	1	70	804.819	-	-	5	1	1	MARCH8|CCDS7213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH8|CCDS7213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	13	25	13	0	0	./.	6	9	8	11	29	33	29	33	8	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695853122	10	50017687	AC	A	840	PASS	WDFY4	CCDS44385.1	r.?	-	-	Del	intronic	D	50017687	50017690	1	64	751.004	-	-	2	1	-	WDFY4|CCDS44385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDFY4|CCDS44385.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	23	9	23	0	0	./.	7	7	11	11	38	29	38	29	11	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695861327	10	72006773	TTTATAAATGTGGAG	T	377	PASS	-	-	-	-	-	Del	-	D	72006773	72006791	14	50	699.597	-	-	1	1	1	-	-	./.	0	0	0	0	30	15	30	15	0	0	./.	9	4	9	5	35	33	35	33	9	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695878163	10	119792587	G	GA	300	PASS	RAB11FIP2	CCDS7602.1	r.?	-	-	Ins	intronic	I	119792587	119792597	1	12	266.065	-	-	9	1	1	RAB11FIP2|CCDS7602.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB11FIP2|CCDS7602.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	3	2	4	3	49	26	49	26	4	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695889237	11	13925955	T	TC	540	PASS	-	-	-	-	-	Ins	-	I	13925955	13925963	1	28	480.033	-	-	7	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	6	3	9	5	25	29	25	29	9	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695892885	11	24159326	T	TA	600	PASS	ENSG00000228428	ENST00000431349	r.?	-	-	Ins	intronic	I	24159326	24159335	1	32	530.962	-	-	8	1	1	ENSG00000228428|ENST00000431349|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000228428|ENST00000431349|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	8	8	0	0	./.	3	7	4	7	14	49	14	50	4	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695895577	11	30881108	T	TG	360	PASS	DCDC5	ENST00000429306	r.?	-	-	Ins	downstream	I	30881108	30881109	1	15	316.41	-	-	0	1	1	DCDC5|ENST00000429306|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DCDC5|ENST00000429306|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	29	7	29	7	0	0	./.	4	2	4	2	41	29	42	29	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695906432	11	64310087	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	64310087	64310094	1	6	266.685	-	-	6	1	1	-	-	./.	0	0	0	0	12	12	14	12	0	0	./.	0	5	5	6	29	29	29	29	5	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695908568	11	69580273	TC	T	300	PASS	-	-	-	-	-	Del	-	D	69580273	69580275	1	6	253.44	-	-	1	1	-	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	0	5	0	9	192	213	192	213	0	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695909804	11	72827587	G	GT	360	PASS	FCHSD2	CCDS8218.2	r.?	-	-	Ins	intronic	I	72827587	72827597	1	16	320.022	-	-	9	1	1	FCHSD2|CCDS8218.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FCHSD2|CCDS8218.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	3	3	38	28	39	28	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695911438	11	77009143	GT	G	300	PASS	-	-	-	-	-	Del	-	D	77009143	77009151	1	12	265.481	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	9	4	126	108	126	108	9	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695939000	12	25715193	TG	T	576	PASS	IFLTD1	CCDS44847.1	r.?	-	-	Del	intronic	D	25715193	25715195	1	27	532.14	-	-	1	1	1	IFLTD1|CCDS44847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFLTD1|CCDS44847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	8	4	11	22	29	22	29	4	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695945762	12	46770978	C	CT	300	PASS	SLC38A2	CCDS8749.1	r.?	-	-	Ins	upstream	I	46770978	46770988	1	12	266.672	-	-	9	1	1	SLC38A2|CCDS8749.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SLC38A2|CCDS8749.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	3	2	34	43	34	44	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695946084	12	47755956	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	47755956	47755974	2	12	269.682	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	4	2	40	22	40	22	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695948842	12	54278349	T	TACC	360	PASS	-	-	-	-	-	Ins	-	I	54278349	54278360	3	15	312.782	-	-	3	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	2	4	0	1	35	40	36	40	2	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695962547	12	95538516	T	TGCAGTGGTGCAATCTCA	319	PASS	FGD6	CCDS31878.1	r.?	-	-	Ins	intronic	I	95538516	95538536	17	42	478.91	-	-	1	1	1	FGD6|CCDS31878.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGD6|CCDS31878.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	6	2	6	32	52	35	52	5	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695966455	12	106420385	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	106420385	106420403	2	12	269.682	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	3	3	23	29	23	29	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695968333	12	112016704	G	GGT	540	PASS	ATXN2	CCDS31902.1	r.?	-	-	Ins	intronic	I	112016704	112016710	2	24	474.591	-	-	2	1	1	ATXN2|CCDS31902.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATXN2|CCDS31902.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	2	7	4	9	34	32	34	33	4	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695975339	12	129270398	T	TGG	329	PASS	-	-	-	-	-	Ins	-	I	129270398	129270404	2	7	315.19	-	-	5	1	1	-	-	./.	0	0	0	0	11	20	11	21	0	0	./.	6	0	5	0	33	29	33	31	6	0	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695980939	13	27686525	AT	A	660	PASS	USP12	CCDS31952.1	r.?	-	-	Del	intronic	D	27686525	27686527	1	40	595.037	-	-	1	1	1	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	4	7	7	8	21	22	21	22	7	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2695995006	13	70646817	G	GA	269	PASS	KLHL1	CCDS9445.1	r.?	-	-	Ins	intronic	I	70646817	70646827	1	10	267.461	-	-	9	1	1	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	17	20	0	0	./.	4	1	4	1	39	40	39	41	4	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696016226	14	33165374	GTC	G	300	PASS	AKAP6	CCDS9644.1	r.?	-	-	Del	intronic	D	33165374	33165391	2	12	270.54	-	-	8	1	1	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	2	26	33	26	33	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696023270	14	51797066	GT	G	1020	PASS	-	-	-	-	-	Del	-	D	51797066	51797068	1	88	916.826	-	-	1	1	1	-	-	./.	0	0	0	0	13	36	13	36	0	0	./.	7	10	8	12	28	41	28	41	8	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696023699	14	52843421	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	52843421	52843431	1	12	267.53	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	2	3	49	41	49	41	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696026182	14	59559129	T	TAA	540	PASS	-	-	-	-	-	Ins	-	I	59559129	59559132	2	30	476.135	-	-	2	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	4	5	10	12	48	32	48	32	10	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696035747	14	85864121	C	CA	689	PASS	-	-	-	-	-	Ins	-	I	85864121	85864128	1	48	642.072	-	-	6	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	5	9	7	23	21	23	21	9	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696036497	14	87628834	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	87628834	87628843	1	15	319.832	-	-	8	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	4	2	6	4	31	33	31	33	6	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696044653	15	20612071	T	TA	543	PASS	-	-	-	-	-	Ins	-	I	20612071	20612079	1	40	588.801	-	-	7	1	1	-	-	./.	0	0	0	0	63	51	63	65	0	0	./.	7	4	12	8	112	81	114	93	12	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696050905	15	37437782	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	37437782	37437791	1	28	479.94	-	-	8	1	1	-	-	./.	0	0	0	0	16	24	16	25	0	0	./.	3	6	3	14	42	38	43	38	3	14	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696057776	15	55949992	CTTTA	C	480	PASS	PRTG	CCDS42040.1	r.?	-	-	Del	intronic	D	55949992	55950002	4	21	433.035	-	-	2	1	1	PRTG|CCDS42040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRTG|CCDS42040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	2	6	3	7	25	34	25	34	3	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696059817	15	61022099	G	GT	720	PASS	RORA	CCDS10177.1	r.?	-	-	Ins	intronic	I	61022099	61022107	1	49	641.726	-	-	7	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	14	0	0	./.	6	6	10	10	38	36	38	36	10	10	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696059869	15	61161250	A	AC	600	PASS	RORA	CCDS10177.1	r.?	-	-	Ins	intronic	I	61161250	61161258	1	35	535.273	-	-	7	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	18	27	18	0	0	./.	4	6	5	8	34	41	35	41	5	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696075084	16	1050842	GT	G	300	PASS	-	-	-	-	-	Del	-	D	1050842	1050844	1	10	266.462	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	4	1	5	1	33	23	33	23	5	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696076720	16	5520845	GATT	G	300	PASS	-	-	-	-	-	Del	-	D	5520845	5520867	3	12	270.677	-	-	7	1	-	-	-	./.	0	0	0	0	7	22	7	22	0	0	./.	3	2	3	3	33	51	33	51	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696083975	16	23182321	A	AAT	300	PASS	-	-	-	-	-	Ins	-	I	23182321	23182335	2	12	264.656	-	-	6	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	3	4	8	22	22	22	22	4	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696084234	16	23725080	C	CA	269	PASS	ERN2	CCDS32407.1	r.?	-	-	Ins	upstream	I	23725080	23725090	1	12	259.84	-	-	9	1	1	ERN2|CCDS32407.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ERN2|CCDS32407.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	8	15	8	16	0	0	./.	3	2	3	2	29	30	29	30	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696102648	16	87807318	AT	A	480	PASS	-	-	-	-	-	Del	-	D	87807318	87807328	1	25	426.46	-	-	9	1	-	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	4	8	14	20	27	20	27	8	14	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696130824	17	69341829	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	69341829	69341849	2	12	270.474	-	-	9	1	1	-	-	./.	0	0	0	0	21	8	21	8	0	0	./.	2	3	4	4	35	32	35	32	4	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696138323	18	6023262	TA	T	720	PASS	L3MBTL4	CCDS11839.2	r.?	-	-	Del	intronic	D	6023262	6023267	1	40	643.032	-	-	4	1	1	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	9	4	11	30	32	30	32	4	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696146350	18	30265978	T	TC	300	PASS	KLHL14	CCDS32813.1	r.?	-	-	Ins	intronic	I	30265978	30265979	1	12	267.077	-	-	0	1	-	KLHL14|CCDS32813.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLHL14|CCDS32813.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	2	3	4	3	33	32	33	33	4	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696160400	18	71217195	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	71217195	71217211	2	12	270.689	-	-	7	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	3	2	4	3	40	40	40	40	4	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696172533	19	20741312	G	GT	300	PASS	ZNF737	ENST00000344519	r.?	-	-	Ins	upstream	I	20741312	20741322	1	10	262.316	-	-	9	1	1	ZNF737|ENST00000344519|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZNF737|ENST00000344519|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	15	15	15	15	0	0	./.	1	4	1	4	42	37	42	38	1	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696176501	19	32356975	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	32356975	32356982	1	45	642.562	-	-	6	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	8	7	9	35	40	35	41	7	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696192689	2	11437676	G	GT	300	PASS	ROCK2	CCDS42654.1	r.?	-	-	Ins	intronic	I	11437676	11437686	1	12	265.41	-	-	9	1	1	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	5	2	40	45	41	45	5	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696198848	2	29224736	TA	T	300	PASS	FAM179A	CCDS1769.2	r.?	-	-	Del	intronic	D	29224736	29224738	1	6	257.583	-	-	1	1	1	FAM179A|CCDS1769.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM179A|CCDS1769.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	5	0	9	0	35	27	35	27	9	0	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696202857	2	40058775	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	40058775	40058785	1	12	263.603	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	2	3	2	44	24	44	25	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696204844	2	45371537	TGG	T	269	PASS	-	-	-	-	-	Del	-	D	45371537	45371541	2	12	266.012	-	-	3	1	-	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	2	3	3	6	20	29	20	29	3	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696212858	2	68950996	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	68950996	68951014	2	12	266.012	-	-	8	1	-	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	3	2	2	40	38	40	38	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696213898	2	71768970	A	AT	300	PASS	DYSF	CCDS46323.1	r.?	-	-	Ins	intronic	I	71768970	71768980	1	10	265.41	-	-	9	1	1	DYSF|CCDS46323.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DYSF|CCDS46323.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	14	25	14	0	0	./.	1	4	2	4	50	22	52	22	2	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696225761	2	109678619	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	109678619	109678621	1	16	316.083	-	-	1	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	3	3	7	5	16	23	16	23	7	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696242318	2	157242622	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	157242622	157242641	2	10	268.42	-	-	9	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	4	1	4	1	48	33	48	33	4	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696248563	2	175059681	TTC	T	329	PASS	OLA1	CCDS2255.1	r.?	-	-	Del	intronic	D	175059681	175059697	2	15	321.502	-	-	7	1	1	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	4	2	1	2	50	42	50	42	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696248896	2	175872575	TAC	T	300	PASS	CHN1	CCDS46455.1	r.?	-	-	Del	upstream	D	175872575	175872593	2	10	267.216	-	-	8	1	-	CHN1|CCDS46455.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CHN1|CCDS46455.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	21	20	21	20	0	0	./.	4	1	4	2	45	34	45	34	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696249303	2	177106604	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	177106604	177106614	1	10	264.206	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	1	5	1	34	34	34	34	5	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696250146	2	179681484	A	AT	720	PASS	TTN	ENST00000412264	r.?	-	-	Ins	intronic	I	179681484	179681491	1	40	635.779	-	-	6	1	1	TTN|ENST00000412264|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTN|ENST00000412264|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	23	12	23	0	0	./.	9	3	11	7	39	41	39	42	11	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696253374	2	189693595	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	189693595	189693604	1	72	791.412	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	7	8	9	8	33	34	33	34	9	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696254939	2	194520695	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	194520695	194520705	1	15	317.889	-	-	9	1	1	-	-	./.	0	0	0	0	20	8	21	8	0	0	./.	4	2	4	2	40	30	40	30	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696262395	2	215311455	A	ATT	900	PASS	VWC2L	CCDS46509.1	r.?	-	-	Ins	intronic	I	215311455	215311462	2	60	787.198	-	-	6	1	1	VWC2L|CCDS46509.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VWC2L|CCDS46509.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	4	11	7	16	36	39	36	39	7	16	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696263287	2	217231222	ATC	A	269	PASS	MARCH4	CCDS33376.1	r.?	-	-	Del	intronic	D	217231222	217231240	2	10	255.777	-	-	8	1	1	MARCH4|CCDS33376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH4|CCDS33376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	27	15	27	0	0	./.	1	4	1	4	30	42	30	42	1	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696268884	2	232371582	T	TC	720	PASS	AC017104.3	ENST00000504794	r.?	-	-	Ins	upstream	I	232371582	232371583	1	48	631.565	-	-	0	1	-	AC017104.3|ENST00000504794|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	AC017104.3|ENST00000504794|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	./.	0	0	0	0	6	8	6	8	0	0	./.	7	5	9	7	26	34	27	34	9	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696269971	2	235119192	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	235119192	235119201	1	20	371.573	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	4	9	5	21	32	22	33	9	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696272409	2	242362260	GC	G	780	PASS	FARP2	CCDS33424.1	r.?	-	-	Del	intronic	D	242362260	242362263	1	56	697.892	-	-	2	1	1	FARP2|CCDS33424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARP2|CCDS33424.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	7	6	8	11	27	33	27	33	8	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696296715	21	10021637	A	AT	393	PASS	-	-	-	-	-	Ins	-	I	10021637	10021645	1	13	644.107	-	-	7	1	1	-	-	./.	0	0	0	0	77	60	77	61	0	0	./.	12	0	18	1	244	215	245	215	18	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696299890	21	15498933	CT	C	600	PASS	LIPI	CCDS13564.1	r.?	-	-	Del	intronic	D	15498933	15498935	1	32	542.776	-	-	1	1	1	LIPI|CCDS13564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIPI|CCDS13564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	10	23	10	0	0	./.	7	3	9	8	35	32	35	32	9	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696306653	21	32626855	C	CA	300	PASS	TIAM1	CCDS13609.1	r.?	-	-	Ins	intronic	I	32626855	32626863	1	12	267.174	-	-	7	1	1	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	2	3	2	3	37	39	37	39	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696323358	22	46730543	CTG	C	569	PASS	GTSE1	CCDS14074.2	r.?	-	-	Del	downstream	D	46730543	46730547	2	32	544.536	-	-	1	1	1	GTSE1|CCDS14074.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL078611.1|ENST00000509577|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	7	4	9	9	27	9	27	4	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696324955	3	368184	A	AT	720	PASS	CHL1	CCDS2556.1	r.?	-	-	Ins	intronic	I	368184	368193	1	48	637.052	-	-	8	1	1	CHL1|CCDS2556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHL1|CCDS2556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	5	7	8	10	32	30	33	30	8	10	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696330155	3	14466265	AT	A	898	PASS	SLC6A6	CCDS33705.1	r.?	-	-	Del	intronic	D	14466265	14466267	1	80	860.641	-	-	1	1	1	SLC6A6|CCDS33705.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC6A6|CCDS33705.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	7	9	11	11	24	32	24	32	11	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696330664	3	16002236	TTC	T	269	PASS	-	-	-	-	-	Del	-	D	16002236	16002254	2	12	263.532	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	3	3	31	26	31	26	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696334329	3	27816760	AG	A	780	PASS	-	-	-	-	-	Del	-	D	27816760	27816765	1	50	699.271	-	-	4	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	9	4	11	4	38	21	38	21	11	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696345172	3	59358179	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	59358179	59358189	1	12	264.134	-	-	9	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	3	2	4	2	44	36	44	36	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696345220	3	59626697	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	59626697	59626706	1	25	424.902	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	4	8	6	41	30	41	30	8	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696347145	3	65320420	CT	C	300	PASS	-	-	-	-	-	Del	-	D	65320420	65320430	1	12	268.95	-	-	9	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	2	3	2	3	39	24	39	24	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696347226	3	65530978	AAG	A	420	PASS	MAGI1	CCDS33781.1	r.?	-	-	Del	intronic	D	65530978	65530996	2	20	376.53	-	-	8	1	1	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	3	4	3	5	18	53	18	53	3	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696348774	3	70354371	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	70354371	70354381	1	56	689.036	-	-	9	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	7	6	11	11	46	46	47	47	11	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696349958	3	73403267	CAG	C	360	PASS	AC103560.1	ENST00000509224	r.?	-	-	Del	intronic	D	73403267	73403285	2	15	321.536	-	-	8	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	2	4	2	34	28	34	28	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696355993	3	88244619	C	CCT	300	PASS	-	-	-	-	-	Ins	-	I	88244619	88244620	2	6	256.307	-	-	0	1	-	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	0	5	1	1	22	29	22	29	1	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696357801	3	97427369	C	CT	360	PASS	EPHA6	CCDS46876.1	r.?	-	-	Ins	intronic	I	97427369	97427374	1	15	319.128	-	-	4	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	16	0	0	./.	4	2	6	7	30	31	30	32	6	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696363193	3	112778029	CAT	C	689	PASS	-	-	-	-	-	Del	-	D	112778029	112778032	2	33	645.481	-	-	1	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	2	10	4	15	23	44	23	44	4	15	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696366185	3	121466373	C	CTATTTTTA	406	PASS	GOLGB1	CCDS3004.1	r.?	-	-	Ins	intronic	I	121466373	121466390	8	28	685.63	-	-	2	1	1	GOLGB1|CCDS3004.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GOLGB1|CCDS3004.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	2	8	2	0	0	./.	13	1	11	2	34	6	36	6	13	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696368624	3	128885813	TAG	T	540	PASS	CNBP	CCDS46906.1	r.?	-	-	Del	downstream	D	128885813	128885817	2	28	472.069	-	-	1	1	1	CNBP|CCDS46906.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CNBP|CCDS46906.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	6	3	8	7	30	21	30	21	8	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696376432	3	152306856	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	152306856	152306873	2	12	268.95	-	-	8	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	3	2	3	2	29	34	29	34	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696381480	3	168497536	AG	A	480	PASS	-	-	-	-	-	Del	-	D	168497536	168497538	1	24	427.912	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	5	6	9	28	31	28	31	6	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696383797	3	175092705	A	ATAAG	269	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Ins	intronic	I	175092705	175092711	4	12	256.909	-	-	1	1	-	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	3	9	3	0	0	./.	2	3	4	4	30	18	30	18	4	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696384646	3	177542434	GGAATAGATTCTGAAAAGGGGGGTGGG	GAAGTGTAAGACTTTTC	493	PASS	-	-	-	-	-	Complex	-	DI	177542435	177542460	26	84	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	11	6	0	0	29	17	32	19	11	6	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696385343	3	179756307	A	AT	720	PASS	PEX5L	CCDS3236.1	r.?	-	-	Ins	upstream	I	179756307	179756316	1	48	636.45	-	-	8	1	1	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	19	16	19	0	0	./.	5	7	7	12	36	46	36	46	7	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696387640	3	186054522	CAG	C	300	PASS	DGKG	CCDS3274.1	r.?	-	-	Del	intronic	D	186054522	186054536	2	12	268.95	-	-	6	1	1	DGKG|CCDS3274.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DGKG|CCDS3274.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	3	2	34	53	34	53	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696399346	4	20442152	TA	T	300	PASS	SLIT2	ENST00000504154	r.?	-	-	Del	intronic	D	20442152	20442162	1	12	268.2	-	-	9	1	1	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	3	2	29	31	29	31	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696402112	4	27830837	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	27830837	27830846	1	16	312.93	-	-	8	1	1	-	-	./.	0	0	0	0	8	19	8	20	0	0	./.	3	3	5	3	30	29	30	29	5	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696402122	4	27870795	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	27870795	27870811	2	12	268.2	-	-	7	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	2	3	2	4	37	35	37	35	2	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696404447	4	34947986	TTTC	T	778	PASS	-	-	-	-	-	Del	-	D	34947986	34947993	3	63	751.443	-	-	2	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	6	8	7	8	20	26	20	26	7	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696409408	4	48221650	TTC	T	300	PASS	TEC	CCDS3481.1	r.?	-	-	Del	intronic	D	48221650	48221666	2	12	266.394	-	-	7	1	1	TEC|CCDS3481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TEC|CCDS3481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	3	38	20	38	20	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696417948	4	71341538	TAG	T	300	PASS	MUC7	CCDS3541.1	r.?	-	-	Del	intronic	D	71341538	71341551	2	12	268.802	-	-	6	1	1	MUC7|CCDS3541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MUC7|CCDS3541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	3	2	4	2	36	30	36	30	4	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696419144	4	75000971	TTTAG	T	869	PASS	MTHFD2L	ENST00000433372	r.?	-	-	Del	intronic	D	75000971	75000976	4	66	805.203	-	-	1	1	1	MTHFD2L|ENST00000433372|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MTHFD2L|ENST00000433372|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	10	8	11	40	37	40	37	8	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696433515	4	119443829	G	GT	263	PASS	-	-	-	-	-	Ins	-	I	119443829	119443839	1	12	265.792	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	3	2	5	34	46	34	46	2	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696434422	4	121482084	TGC	T	300	PASS	-	-	-	-	-	Del	-	D	121482084	121482088	2	10	262.782	-	-	1	1	-	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	1	3	35	30	35	30	1	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696442522	4	145163824	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	145163824	145163831	1	63	743.616	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	6	8	6	11	25	46	25	46	6	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696458809	4	188852286	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	188852286	188852296	1	15	314.736	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	2	4	48	28	50	29	2	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696461007	5	86478	TC	T	300	PASS	-	-	-	-	-	Del	-	D	86478	86487	1	12	264.983	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	3	2	11	10	11	10	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696469117	5	21957785	TTTG	T	727	PASS	CDH12	CCDS3890.1	r.?	-	-	Del	intronic	D	21957785	21957791	3	80	857.218	-	-	1	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	9	7	9	9	24	40	24	40	9	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696471437	5	29035352	TC	T	1200	PASS	-	-	-	-	-	Del	-	D	29035352	29035355	1	112	1076.19	-	-	2	1	1	-	-	./.	0	0	0	0	7	23	7	23	0	0	./.	7	13	8	16	35	52	35	52	8	16	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696475613	5	39812631	T	TA	1200	PASS	-	-	-	-	-	Ins	-	I	39812631	39812641	1	120	1059.93	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	17	10	0	0	./.	11	9	11	12	49	50	49	50	11	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696480386	5	57475723	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	57475723	57475733	1	12	266.187	-	-	9	1	1	-	-	./.	0	0	0	0	20	18	20	19	0	0	./.	3	2	3	2	40	34	41	34	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696504911	5	133592275	TTA	T	660	PASS	-	-	-	-	-	Del	-	D	133592275	133592281	2	30	587.418	-	-	2	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	9	3	11	26	44	26	44	3	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696505681	5	135978840	TGAGAGCAAATGTCCTCTTTA	T	290	PASS	-	-	-	-	-	Del	-	D	135978840	135978863	20	27	531.17	-	-	1	1	1	-	-	./.	0	0	0	0	25	24	25	24	0	0	./.	2	8	2	8	24	33	24	33	2	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696515140	5	164123269	GA	G	958	PASS	-	-	-	-	-	Del	-	D	164123269	164123272	1	90	914.67	-	-	2	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	8	9	15	11	36	40	36	40	15	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696520428	5	178324997	C	CT	300	PASS	ZFP2	CCDS4440.1	r.?	-	-	Ins	intronic	I	178324997	178325007	1	10	264.983	-	-	9	1	1	ZFP2|CCDS4440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZFP2|CCDS4440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	13	25	13	0	0	./.	1	4	1	4	50	37	52	38	1	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696523779	6	5855846	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	5855846	5855865	2	12	267.348	-	-	9	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	2	3	2	4	43	27	43	27	2	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696545180	6	57528196	TTGTATCC	T	481	PASS	-	-	-	-	-	Del	-	D	57528196	57528207	7	84	915.125	-	-	1	1	1	-	-	./.	0	0	0	0	47	65	47	65	0	0	./.	6	11	6	12	69	103	69	103	6	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696548883	6	70079755	G	GT	720	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	70079755	70079764	1	33	638.746	-	-	8	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	30	27	30	0	0	./.	10	2	14	3	39	33	39	33	14	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696552375	6	80422635	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	80422635	80422654	2	12	266.144	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	2	3	27	44	27	44	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696555913	6	90771885	CAT	C	480	PASS	BACH2	CCDS5026.1	r.?	-	-	Del	intronic	D	90771885	90771888	2	21	430.647	-	-	1	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	6	2	6	2	43	29	43	29	6	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696563375	6	112731814	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	112731814	112731823	1	66	797.831	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	20	0	0	./.	5	10	8	13	39	38	39	39	8	13	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696566772	6	122977170	C	CTTTTATGGTATTGTGAGTTTTG	319	PASS	PKIB	CCDS5126.1	r.?	-	-	Ins	intronic	I	122977170	122977196	22	40	444.635	-	-	1	1	1	PKIB|CCDS5126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PKIB|CCDS5126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	4	7	2	3	23	43	25	48	4	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696573031	6	142825070	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	142825070	142825080	1	12	266.144	-	-	9	1	1	-	-	./.	0	0	0	0	24	15	26	15	0	0	./.	3	2	3	2	38	32	38	32	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696573233	6	143685335	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	143685335	143685345	1	12	266.144	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	19	20	0	0	./.	3	2	3	2	36	44	37	44	3	2	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696576922	6	154133027	CA	C	360	PASS	-	-	-	-	-	Del	-	D	154133027	154133029	1	7	315.159	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	0	6	0	7	23	27	23	27	0	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696582911	7	114099	T	TG	389	PASS	-	-	-	-	-	Ins	-	I	114099	114106	1	20	372.738	-	-	6	1	1	-	-	./.	0	0	0	0	21	16	21	17	0	0	./.	3	4	5	8	37	41	38	41	5	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696583755	7	2480040	ATG	A	300	PASS	ENSG00000230059	ENST00000432223	r.?	-	-	Del	intronic	D	2480040	2480058	2	12	269.252	-	-	8	1	-	ENSG00000230059|ENST00000432223|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000230059|ENST00000432223|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	3	3	31	32	31	32	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696598104	7	41122663	AC	A	600	PASS	-	-	-	-	-	Del	-	D	41122663	41122666	1	35	537.902	-	-	2	1	1	-	-	./.	0	0	0	0	28	10	28	10	0	0	./.	6	4	7	8	30	29	30	29	7	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696598515	7	42345131	TC	T	900	PASS	-	-	-	-	-	Del	-	D	42345131	42345133	1	72	807.755	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	8	7	10	11	31	47	31	47	10	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696600464	7	47951448	AAC	A	300	PASS	PKD1L1	CCDS34633.1	r.?	-	-	Del	intronic	D	47951448	47951465	2	12	259.017	-	-	8	1	1	PKD1L1|CCDS34633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKD1L1|CCDS34633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	3	4	32	44	32	44	3	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696601405	7	51000221	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	51000221	51000230	1	72	798.724	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	7	8	8	12	35	43	35	43	8	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696602998	7	55136462	AAG	A	300	PASS	EGFR	CCDS5514.1	r.?	-	-	Del	intronic	D	55136462	55136480	2	10	269.252	-	-	8	1	1	EGFR|CCDS5514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EGFR|CCDS5514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	17	26	17	0	0	./.	4	1	5	1	28	38	28	38	5	1	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696617432	7	94927349	TA	T	1020	PASS	PON1	CCDS5638.1	r.2206delU	c.?	p.?	Del	3'UTR variant	D	94927349	94927351	1	88	912.446	-	-	1	1	1	PON1|CCDS5638.1|r.2206delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PON1|CCDS5638.1|r.2206delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	19	14	19	14	0	0	./.	7	10	12	14	43	30	43	30	12	14	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696628094	7	125856242	GAC	G	360	PASS	-	-	-	-	-	Del	-	D	125856242	125856260	2	15	323.102	-	-	8	1	-	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	2	4	3	4	38	42	38	42	3	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696639478	7	156338447	T	TA	1080	PASS	-	-	-	-	-	Ins	-	I	156338447	156338456	1	91	958.469	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	12	6	18	12	41	34	43	34	18	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696644353	8	10079602	TA	T	300	PASS	MSRA	CCDS47799.1	r.?	-	-	Del	intronic	D	10079602	10079606	1	10	268.992	-	-	3	1	1	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	1	4	1	5	32	35	32	35	1	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696653238	8	33074883	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	33074883	33074901	2	12	269.594	-	-	8	1	-	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	3	3	23	30	23	30	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696660575	8	58935777	AATAG	A	658	PASS	FAM110B	CCDS6170.1	r.?	-	-	Del	intronic	D	58935777	58935786	4	48	645.822	-	-	2	1	1	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	7	5	9	5	38	30	38	30	9	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696666657	8	78121051	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	78121051	78121061	1	12	265.38	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	2	3	49	37	49	37	2	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696667854	8	81708465	ACT	A	1080	PASS	ZNF704	CCDS34913.1	r.?	-	-	Del	intronic	D	81708465	81708472	2	91	966.926	-	-	3	1	1	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	24	16	24	0	0	./.	6	12	9	14	39	42	39	42	9	14	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696673462	8	99120004	A	AAT	356	PASS	HRSP12	CCDS6276.1	r.?	-	-	Ins	intronic	I	99120004	99120005	2	24	406.064	-	-	0	1	1	HRSP12|CCDS6276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HRSP12|CCDS6276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	5	3	0	0	29	18	29	18	5	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696676313	8	107106762	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	107106762	107106781	2	12	269.594	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	2	4	2	25	20	25	20	4	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696679494	8	117186314	C	CG	840	PASS	AF130342.1	ENST00000505156	r.?	-	-	Ins	intronic	I	117186314	117186317	1	60	745.832	-	-	2	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	29	8	30	0	0	./.	5	9	8	12	28	43	28	44	8	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696683094	8	127577083	TG	T	840	PASS	-	-	-	-	-	Del	-	D	127577083	127577087	1	64	754.863	-	-	3	1	1	-	-	./.	0	0	0	0	11	26	11	26	0	0	./.	7	7	9	10	30	36	30	36	9	10	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696687773	8	142003742	CA	C	720	PASS	PTK2	CCDS6381.1	r.?	-	-	Del	intronic	D	142003742	142003744	1	45	639.199	-	-	1	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	4	8	9	13	39	47	39	47	9	13	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696690454	9	4107945	AGT	A	300	PASS	GLIS3	CCDS6451.1	r.?	-	-	Del	intronic	D	4107945	4107961	2	6	269.958	-	-	7	1	1	GLIS3|CCDS6451.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLIS3|CCDS6451.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	0	5	0	5	25	44	25	44	0	5	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696690946	9	5281935	G	GA	355	PASS	-	-	-	-	-	Ins	-	I	5281935	5281945	1	16	318.531	-	-	9	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	3	3	3	3	35	41	35	41	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696692443	9	9298259	A	AT	600	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	9298259	9298268	1	35	532.089	-	-	8	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	6	4	7	4	29	28	29	28	7	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696696737	9	20781881	CT	C	720	PASS	KIAA1797	CCDS34993.1	r.1515delU	c.1151delT	p.L385fs*3	Del	frameshift	D	20781881	20781886	1	45	647.898	-	-	4	1	1	KIAA1797|CCDS34993.1|r.1515delU|c.1151delT|p.L385fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	KIAA1797|CCDS34993.1|r.1515delU|c.1151delT|p.L385fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	10	12	10	0	0	./.	4	8	7	11	36	46	36	46	7	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696702903	9	38164935	CG	C	660	PASS	-	-	-	-	-	Del	-	D	38164935	38164937	1	36	593.305	-	-	1	1	-	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	8	3	10	3	41	23	41	23	10	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696732713	X	4701576	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	4701576	4701593	2	12	270.079	-	-	8	1	-	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	2	4	4	34	38	34	38	4	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696738874	X	26366872	AT	A	660	PASS	-	-	-	-	-	Del	-	D	26366872	26366874	1	40	594.174	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	7	5	9	35	32	35	32	5	9	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696739548	X	28912753	TAG	T	522	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	28912753	28912760	2	40	594.174	-	-	3	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	4	7	4	8	24	30	24	30	4	8	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696741991	X	38646867	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	38646867	38646877	1	16	319.279	-	-	9	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	3	3	3	4	42	52	42	52	3	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696742988	X	42516096	T	TA	626	PASS	-	-	-	-	-	Ins	-	I	42516096	42516105	1	48	639.159	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	5	10	11	35	30	36	30	10	11	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696748804	X	69364341	AG	A	780	PASS	IGBP1	CCDS14396.1	r.?	-	-	Del	intronic	D	69364341	69364344	1	54	702.206	-	-	2	1	1	IGBP1|CCDS14396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGBP1|CCDS14396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	24	16	24	0	0	./.	5	8	7	10	21	29	21	29	7	10	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696751349	X	78905724	CTT	C	358	PASS	-	-	-	-	-	Del	-	D	78905724	78905733	2	20	378.111	-	-	8	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	4	6	4	20	16	20	16	6	4	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696751759	X	80522707	TG	T	316	PASS	SH3BGRL	CCDS14449.1	r.?	-	-	Del	intronic	D	80522707	80522709	1	45	647.588	-	-	1	1	1	SH3BGRL|CCDS14449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3BGRL|CCDS14449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	22	23	22	0	0	./.	8	4	9	7	37	35	37	35	9	7	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696762762	X	122074435	GCA	G	898	PASS	-	-	-	-	-	Del	-	D	122074435	122074440	2	77	863.651	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	6	10	7	12	32	33	32	33	7	12	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696764235	X	126613301	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	126613301	126613311	1	12	267.069	-	-	9	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	2	3	3	3	32	43	33	44	3	3	1	1	1	1	1	1	1	1
2629537	PD13358a	PD13358b	2696769048	X	145025048	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	145025048	145025058	1	36	534.138	-	-	9	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	5	5	8	6	35	34	35	34	8	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693284439	1	28760849	TG	T	300	PASS	PHACTR4	CCDS41293.1	r.?	-	-	Del	intronic	D	28760849	28760851	1	10	237.134	-	-	1	1	1	PHACTR4|CCDS41293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR4|CCDS41293.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	4	1	6	1	32	29	32	29	6	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693285058	1	30723760	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	30723760	30723776	2	12	268.441	-	-	7	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	2	3	2	3	38	24	38	24	2	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693289666	1	43841952	TA	T	300	PASS	-	-	-	-	-	Del	-	D	43841952	43841954	1	6	255.196	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	0	11	0	36	34	36	34	11	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693296789	1	64395094	TTC	T	300	PASS	ROR1	CCDS626.1	r.?	-	-	Del	intronic	D	64395094	64395113	2	12	268.441	-	-	9	1	1	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	2	3	2	4	37	32	37	32	2	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693300175	1	74528835	C	CA	269	PASS	LRRIQ3	CCDS41350.1	r.?	-	-	Ins	intronic	I	74528835	74528840	1	10	264.829	-	-	4	1	1	LRRIQ3|CCDS41350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRIQ3|CCDS41350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	16	0	0	./.	4	1	0	3	29	32	29	32	4	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693308457	1	98867599	AG	A	1140	PASS	-	-	-	-	-	Del	-	D	98867599	98867601	1	104	1019.48	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	12	7	15	9	37	28	37	28	15	9	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693337189	1	200235709	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	200235709	200235727	2	6	268.441	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	5	0	5	1	21	37	21	37	5	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693338406	1	203278945	T	TTTTG	660	PASS	BTG2	CCDS1437.1	r.?	-	-	Ins	downstream	I	203278945	203278969	4	42	558.662	-	-	5	1	-	BTG2|CCDS1437.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	BTG2|CCDS1437.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	23	25	23	25	0	0	./.	6	5	10	5	45	38	45	38	10	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693376602	10	59005688	TA	T	840	PASS	-	-	-	-	-	Del	-	D	59005688	59005690	1	63	753.837	-	-	1	1	-	-	-	./.	0	0	0	0	30	16	30	16	0	0	./.	6	8	9	8	30	27	30	27	9	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693411479	11	21707490	A	AAAATC	261	PASS	-	-	-	-	-	Ins	-	I	21707490	21707494	5	10	458.679	-	-	0	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	9	0	10	0	56	55	56	55	10	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693412409	11	23644212	CATTTGGTGAGG	C	290	PASS	-	-	-	-	-	Del	-	D	23644212	23644224	11	35	539.747	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	6	4	6	4	47	33	47	33	6	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693416939	11	34411407	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	34411407	34411417	1	12	266.863	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	4	3	54	51	54	53	4	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693420486	11	44670613	TTTTA	T	689	PASS	-	-	-	-	-	Del	-	D	44670613	44670622	4	48	646.492	-	-	2	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	5	7	10	7	27	21	27	21	10	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693432328	11	81853286	TA	T	660	PASS	AP002802.1	ENST00000500502	r.?	-	-	Del	intronic	D	81853286	81853294	1	40	591.915	-	-	7	1	1	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	7	4	10	5	18	14	18	14	10	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693435160	11	91130225	AC	A	1200	PASS	-	-	-	-	-	Del	-	D	91130225	91130227	1	117	1079.49	-	-	1	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	12	8	15	10	26	22	26	22	15	10	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693449096	12	5243775	TCAACAGGCAA	T	580	PASS	-	-	-	-	-	Del	-	D	5243775	5243788	10	120	1077.41	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	9	11	11	11	31	28	31	28	11	11	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693462281	12	42139469	AC	A	1380	PASS	-	-	-	-	-	Del	-	D	42139469	42139473	1	156	1240.5	-	-	3	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	12	11	14	16	31	38	31	38	14	16	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693480376	12	96110760	GTATTTT	G	319	PASS	NTN4	CCDS9054.1	r.?	-	-	Del	intronic	D	96110760	96110768	6	40	593.571	-	-	1	1	1	NTN4|CCDS9054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTN4|CCDS9054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	7	4	7	8	26	28	26	28	7	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693486039	12	112629174	AT	A	1020	PASS	C12orf51	CCDS44978.1	r.?	-	-	Del	intronic	D	112629174	112629176	1	84	914.326	-	-	1	1	1	C12orf51|CCDS44978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf51|CCDS44978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	6	11	10	14	37	37	37	37	10	14	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693486960	12	115448903	TA	T	300	PASS	-	-	-	-	-	Del	-	D	115448903	115448913	1	10	269.805	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	4	1	35	20	35	20	4	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693498869	13	29219568	C	CCA	298	PASS	-	-	-	-	-	Ins	-	I	29219568	29219569	2	16	305.847	-	-	0	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	3	0	0	37	25	37	26	3	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693500231	13	32723612	GT	G	300	PASS	FRY	CCDS41875.1	r.?	-	-	Del	intronic	D	32723612	32723614	1	6	270.426	-	-	1	1	1	FRY|CCDS41875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRY|CCDS41875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	5	0	9	0	37	9	37	9	9	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693502583	13	39358235	C	CA	300	PASS	FREM2	CCDS31960.1	r.?	-	-	Ins	intronic	I	39358235	39358245	1	10	265.609	-	-	9	1	1	FREM2|CCDS31960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FREM2|CCDS31960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	1	4	2	36	28	37	28	4	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693525779	13	104714723	T	TACACGCACACTCTCTCTCTCTCTCATAC	300	PASS	-	-	-	-	-	Ins	-	I	104714723	104714728	28	12	184.331	-	-	0	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	0	0	25	18	25	19	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693530972	14	23053678	CA	C	300	PASS	DAD1	CCDS9571.1	r.?	-	-	Del	intronic	D	23053678	23053688	1	12	268.885	-	-	9	1	1	DAD1|CCDS9571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAD1|CCDS9571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	2	3	2	30	44	30	44	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693544545	14	60431412	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	60431412	60431416	1	16	317.003	-	-	3	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	5	6	31	39	31	39	5	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693548232	14	71006540	C	CT	291	PASS	ADAM20	CCDS32111.1	r.?	-	-	Ins	upstream	I	71006540	71006543	1	16	321.217	-	-	2	1	1	ADAM20|CCDS32111.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ADAM20|CCDS32111.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	3	3	30	24	30	24	3	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693548862	14	72867789	AT	A	300	PASS	RGS6	CCDS9808.1	r.?	-	-	Del	intronic	D	72867789	72867799	1	10	270.691	-	-	9	1	1	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	1	4	1	4	29	51	29	51	1	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693562572	15	22363433	CT	C	720	PASS	-	-	-	-	-	Del	-	D	22363433	22363441	1	48	649.438	-	-	7	1	1	-	-	./.	0	0	0	0	27	34	27	34	0	0	./.	7	5	9	5	42	44	42	44	9	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693565659	15	31065862	T	TC	449	PASS	ENSG00000203289	ENST00000366119	r.?	-	-	Ins	downstream	I	31065862	31065863	1	24	407.471	-	-	0	1	-	ENSG00000203289|ENST00000366119|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000203289|ENST00000366119|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	9	9	9	0	0	./.	5	3	7	8	26	36	26	36	7	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693570002	15	42842586	T	TA	900	PASS	HAUS2	CCDS10090.1	r.?	-	-	Ins	intronic	I	42842586	42842588	1	72	803.519	-	-	1	1	1	HAUS2|CCDS10090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HAUS2|CCDS10090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	8	7	16	12	39	39	39	40	16	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693575714	15	59331867	AT	A	1020	PASS	RNF111	CCDS10169.1	r.?	-	-	Del	intronic	D	59331867	59331869	1	70	911.858	-	-	1	1	1	RNF111|CCDS10169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF111|CCDS10169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	4	13	6	18	20	34	20	34	6	18	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693577486	15	63880124	C	CT	780	PASS	USP3	CCDS32265.1	r.?	-	-	Ins	intronic	I	63880124	63880133	1	36	696.383	-	-	8	1	1	USP3|CCDS32265.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AC118274.1|ENST00000499437|r.1568_1569insa|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	./.	0	0	0	0	18	8	18	8	0	0	./.	2	11	4	15	25	35	25	35	4	15	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693588038	15	94890001	AACGAATGATGGGGAGTAGAAAAAATGTTG	A	406	PASS	MCTP2	CCDS32338.1	r.?	-	-	Del	intronic	D	94890001	94890034	29	55	757.175	-	-	1	1	1	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	28	13	28	0	0	./.	4	10	0	9	16	34	19	35	4	10	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693589033	15	98035550	GGA	G	420	PASS	-	-	-	-	-	Del	-	D	98035550	98035569	2	20	376.179	-	-	9	1	-	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	3	4	3	4	34	31	34	31	3	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693591021	16	878087	A	AGGGGAAATGAACTCTCGGCCTCCAGGGCAGCCAGGCAGGGGTCTGGCCCAGTCCTAGCCG	319	PASS	-	-	-	-	-	Ins	-	I	878087	878115	60	42	198.212	-	-	0	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	6	5	0	0	31	36	37	41	6	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693593620	16	6798266	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	6798266	6798284	2	12	270.714	-	-	8	1	-	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	2	3	3	4	31	56	31	56	3	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693594448	16	8228048	AAC	A	420	PASS	-	-	-	-	-	Del	-	D	8228048	8228063	2	14	379	-	-	7	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	6	1	6	1	47	40	47	40	6	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693604941	16	31325306	AG	A	929	PASS	ITGAM	CCDS45470.1	r.?	-	-	Del	intronic	D	31325306	31325308	1	81	865.082	-	-	1	1	1	ITGAM|CCDS45470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGAM|CCDS45470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	8	8	10	12	48	47	48	47	10	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693608684	16	50292087	CA	C	494	PASS	-	-	-	-	-	Del	-	D	50292087	50292089	1	10	484.275	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	0	9	1	10	11	15	11	15	1	10	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693612903	16	65398195	CAGTT	C	956	PASS	AC009055.1	ENST00000505989	r.?	-	-	Del	intronic	D	65398195	65398204	4	84	973.367	-	-	2	1	1	AC009055.1|ENST00000505989|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC009055.1|ENST00000505989|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	24	14	24	0	0	./.	5	13	9	15	18	22	18	22	9	15	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693619339	16	88621742	TTG	T	269	PASS	C16orf85	ENST00000378416	r.?	-	-	Del	intronic	D	88621742	88621745	2	6	252.05	-	-	1	1	1	C16orf85|ENST00000378416|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C16orf85|ENST00000378416|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	5	0	6	0	18	18	18	18	6	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693623513	17	10633185	CGCGGGGCGGTGAGTCCTGCCACGT	C	290	PASS	TMEM220	CCDS32567.1	r.438_461del24	c.?	p.?	Del	5'UTR variant	D	10633185	10633234	24	20	503.616	-	-	2	1	1	TMEM220|CCDS32567.1|r.438_461del24|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	TMEM220|CCDS32567.1|r.438_461del24|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	8	11	8	11	0	0	./.	1	9	0	6	7	13	8	17	1	10	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693639554	17	57218629	GCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAAGCGGA	G	290	PASS	SKA2	CCDS45747.1	r.?	-	-	Del	intronic	D	57218629	57218693	63	35	541.546	-	-	1	1	1	SKA2|CCDS45747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SKA2|CCDS45747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	4	6	0	0	15	13	19	19	4	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693663969	18	43687104	ACAAT	A	720	PASS	ATP5A1	CCDS11927.1	r.?	-	-	Del	upstream	D	43687104	43687112	4	45	649.338	-	-	1	1	1	ATP5A1|CCDS11927.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HAUS1|CCDS11928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	8	4	9	5	35	20	35	20	9	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693666392	18	50730275	TGCAG	T	838	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50730275	50730281	4	72	812.425	-	-	1	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	7	8	8	9	32	38	32	38	8	9	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693667202	18	53236802	TA	T	540	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	53236802	53236809	1	30	486.251	-	-	6	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	5	4	7	6	24	28	24	28	7	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693669844	18	60855450	TA	T	300	PASS	BCL2	CCDS11981.1	r.?	-	-	Del	intronic	D	60855450	60855452	1	12	270.808	-	-	1	1	1	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	2	3	4	42	33	42	33	3	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693675123	18	74876655	ATGGCGCGGGAAGGGTGTGTGTGTGTGACAATTTATAAAACTATCCATAAACCAGGCGTAGCCAGCTCTTCTCATCTTGGGGGAGGATCCTGGACCCGCTACCCCACCGCGTTTTACTCATGCAGTGTGGACGCAGGAAGGCCCCTCTGCAGAGCGCGGTGTGCCCACCGCCATGTCTAAGGAAATGAGTAGACAGGGGCACGTGGGGCTCCTGGGAGGCGGAAAAGCAGACAGCAGCTTCCTGATGAGGTGACACCCGCTTCTCAGGCTGGGAGGCTGCCAGGGCTGTGGTGAATTTCTAGAAGGGAGGGGACCATGGTGCTGGGCACAGTCTACATTCCAGTCACGTCTGAATGGCTTCTTGTGTGTCCTTTAACTTGATTCTCACAGCAGTTCACTCTTCAGGGGCCCCCTGCCTGGGTTGGATCTGACCCCCTCCTACCTGGGAGGGGTTTTGGCTTTTGCCTCACTTCTCTGCACCTGTTTCCTTACCTGTAAAATGGGAAGGCGATGGCGAG	A	319	PASS	-	-	-	-	-	Del	-	D	74876655	74877174	517	42	595.778	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	6	5	0	0	14	10	20	15	6	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693679344	19	7637002	GGT	G	329	PASS	-	-	-	-	-	Del	-	D	7637002	7637005	2	7	317.312	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	0	9	0	30	20	30	20	9	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693691606	19	39131881	AGGCAGAGGTTG	A	290	PASS	EIF3K	CCDS12517.1	r.?	-	-	Del	downstream	D	39131881	39131893	11	27	541.296	-	-	1	1	1	EIF3K|CCDS12517.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EIF3K|CCDS12517.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	13	5	13	0	0	./.	2	8	2	12	11	30	11	30	2	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693696490	19	50913790	CAG	C	1080	PASS	POLD1	CCDS12795.1	r.?	-	-	Del	intronic	D	50913790	50913797	2	99	969.998	-	-	3	1	1	POLD1|CCDS12795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLD1|CCDS12795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	8	10	11	14	34	38	34	38	11	14	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693701788	2	4081703	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	4081703	4081713	1	45	633.685	-	-	9	1	1	-	-	./.	0	0	0	0	12	25	12	25	0	0	./.	8	4	9	6	26	31	26	33	9	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693704609	2	11904710	GT	G	600	PASS	LPIN1	CCDS1682.1	r.?	-	-	Del	intronic	D	11904710	11904713	1	36	535.296	-	-	2	1	1	LPIN1|CCDS1682.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPIN1|CCDS1682.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	5	5	8	21	22	21	22	5	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693705652	2	15319336	CGT	C	300	PASS	NBAS	CCDS1685.1	r.?	-	-	Del	intronic	D	15319336	15319353	2	10	264.337	-	-	8	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	4	1	26	35	26	35	4	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693707999	2	23527205	GCT	G	420	PASS	-	-	-	-	-	Del	-	D	23527205	23527224	2	20	375.971	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	3	4	3	43	33	43	33	4	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693711287	2	32271073	TTTT	TA	329	PASS	-	-	-	-	-	Complex	-	DI	32271074	32271076	3	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	1	5	0	0	19	17	19	17	1	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693711574	2	32973988	CAGG	C	766	PASS	TTC27	CCDS33176.1	r.?	-	-	Del	intronic	D	32973988	32973994	3	84	899.828	-	-	1	1	1	TTC27|CCDS33176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC27|CCDS33176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	11	6	12	9	32	19	32	19	12	9	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693729423	2	85634572	ATGCC	A	540	PASS	CAPG	CCDS1974.1	r.?	-	-	Del	intronic	D	85634572	85634579	4	28	482.79	-	-	1	1	1	CAPG|CCDS1974.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CAPG|CCDS1974.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	6	21	6	0	0	./.	3	6	6	7	22	13	22	13	6	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693739109	2	117785311	GC	G	300	PASS	-	-	-	-	-	Del	-	D	117785311	117785315	1	10	268.551	-	-	3	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	1	4	2	36	19	36	19	4	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693745208	2	134848811	T	TCCTC	656	PASS	-	-	-	-	-	Ins	-	I	134848811	134848821	4	56	665.721	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	6	7	8	9	38	30	38	31	8	9	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693755706	2	167307607	GT	G	720	PASS	SCN7A	CCDS46442.1	r.?	-	-	Del	intronic	D	167307607	167307611	1	48	644.522	-	-	3	1	1	SCN7A|CCDS46442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN7A|CCDS46442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	14	28	14	0	0	./.	5	7	7	7	29	23	29	23	7	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693756315	2	169199952	T	TTA	418	PASS	-	-	-	-	-	Ins	-	I	169199952	169199953	2	24	415.232	-	-	0	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	5	0	0	38	37	38	39	3	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693760809	2	181733775	AC	A	300	PASS	-	-	-	-	-	Del	-	D	181733775	181733777	1	6	267.949	-	-	1	1	-	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	5	0	7	2	30	27	30	27	7	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693764602	2	193223222	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	193223222	193223231	1	22	584.19	-	-	8	1	1	-	-	./.	0	0	0	0	25	2	25	2	0	0	./.	10	1	12	1	28	3	28	3	12	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693765066	2	195099564	GC	G	660	PASS	-	-	-	-	-	Del	-	D	195099564	195099566	1	40	590.812	-	-	1	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	4	7	7	10	20	25	20	25	7	10	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693765081	2	195165819	GA	G	660	PASS	-	-	-	-	-	Del	-	D	195165819	195165825	1	40	590.812	-	-	5	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	7	4	10	5	33	25	33	25	10	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693765970	2	197792564	TGC	T	298	PASS	PGAP1	CCDS2318.1	r.?	-	-	Del	upstream	D	197792564	197792568	2	15	313.23	-	-	1	1	1	PGAP1|CCDS2318.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PGAP1|CCDS2318.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	15	14	15	0	0	./.	4	2	5	3	25	32	25	32	5	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693784701	20	8327880	AATAATGTC	A	464	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8327880	8327892	8	72	867.971	-	-	1	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	11	5	12	6	41	32	41	32	12	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693800771	20	54819405	CCA	C	300	PASS	MC3R	CCDS13449.2	r.?	-	-	Del	upstream	D	54819405	54819421	2	12	271.429	-	-	7	1	1	MC3R|CCDS13449.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MC3R|CCDS13449.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	2	29	28	29	28	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693807015	21	11129360	AT	A	319	PASS	-	-	-	-	-	Del	-	D	11129360	11129368	1	9	434.494	-	-	7	1	1	-	-	./.	0	0	0	0	103	85	103	85	0	0	./.	0	8	1	11	110	175	110	175	1	11	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693823995	22	25721223	A	AAT	298	PASS	-	-	-	-	-	Ins	-	I	25721223	25721224	2	12	320.538	-	-	0	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	1	5	0	0	17	19	17	20	1	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693831569	3	448097	TC	T	389	PASS	CHL1	CCDS2556.1	r.5021delC	c.?	p.?	Del	3'UTR variant	D	448097	448099	1	8	355.612	-	-	1	1	1	CHL1|CCDS2556.1|r.5021delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CHL1|CCDS2556.1|r.5021delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	18	17	18	0	0	./.	7	0	13	0	47	38	47	38	13	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693832320	3	2354407	CT	C	780	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2354407	2354416	1	54	699.556	-	-	8	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	20	22	20	0	0	./.	5	8	11	12	50	59	50	59	11	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693842291	3	26931551	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	26931551	26931571	2	10	269.06	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	1	4	1	43	45	43	45	4	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693843539	3	30444841	TTC	T	420	PASS	-	-	-	-	-	Del	-	D	30444841	30444857	2	20	376.684	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	3	5	3	41	38	41	38	5	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693866658	3	108944312	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	108944312	108944322	1	12	265.448	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	3	2	4	45	35	46	36	2	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693873972	3	130832558	T	TA	900	PASS	NEK11	CCDS3069.1	r.?	-	-	Ins	intronic	I	130832558	130832560	1	66	793.935	-	-	1	1	1	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	5	10	6	14	25	33	25	33	6	14	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693878897	3	146187566	CA	C	300	PASS	PLSCR2	CCDS3134.1	r.?	-	-	Del	intronic	D	146187566	146187568	1	6	269.06	-	-	1	1	1	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	0	5	0	6	14	26	14	26	0	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693888222	3	174482787	G	GT	300	PASS	NAALADL2	ENST00000434257	r.?	-	-	Ins	intronic	I	174482787	174482797	1	10	266.05	-	-	9	1	1	NAALADL2|ENST00000434257|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NAALADL2|ENST00000434257|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	1	4	1	4	37	44	38	44	1	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693899512	4	8332647	AC	A	718	PASS	-	-	-	-	-	Del	-	D	8332647	8332649	1	50	699.218	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	9	4	12	7	34	24	34	24	12	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693912494	4	45983369	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	45983369	45983379	1	20	370.481	-	-	9	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	4	3	5	4	28	29	28	29	5	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693914971	4	54294495	G	GAT	840	PASS	FIP1L1	CCDS3491.1	r.?	-	-	Ins	intronic	I	54294495	54294506	2	64	735.544	-	-	5	1	1	FIP1L1|CCDS3491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FIP1L1|CCDS3491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	24	30	24	0	0	./.	7	7	12	13	34	36	35	37	12	13	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693925633	4	84910144	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	84910144	84910154	1	12	262.307	-	-	9	1	1	-	-	./.	0	0	0	0	20	12	20	13	0	0	./.	3	2	3	2	38	31	38	31	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693929209	4	96043658	CCTGTTGCAGAAAAAAATATTTGTTGTTCTGGAAAATGTTCACAGTATTATAAATGAGAACAACCTAGTTATAAATCAGTATATATTATATTTTGCTTATGAACATTTTTATTGAAATGATACTGTTAGCAGTAATTTTTCCTGAGTGTTGAAGAGGTAGTGATTTTATTTTATTTTGGTTAGTTGATCCTTTTCAGTTTTTCTTCATGTAACATATAATACTTCTGAGTAAAAAAAGTTACATTGAGTGGAAGAACATTCCCAGCCAAAATATTTAGGTGGCCATATAGTTAAAGGTATATAGTACAGTTGGAAAACGTCTTGTCCATAGCATCCAAAGTCATAAATTACAATACTACCTTTTAAAATTAAATGACAGTAATCACTCTCTCAAAGGTAAATGGTGCCTTTAATAAGAATGGTACTAATGGTATTACTATATAAGTGCACCTGGTTTTAAGTCAGTTTCCTCAAAATATGTCCCAGAAATCACCCGTGTAAAATTTACCTGGGATGATTATTAAAAATAAAGTACTTTGAATGGAAATCTTTGGGGTTAAAGTCAGTGAATATACATTGTATAAAGTTAAGT	C	319	PASS	BMPR1B	CCDS3642.1	r.?	-	-	Del	intronic	D	96043658	96044251	591	42	591.646	-	-	1	1	1	BMPR1B|CCDS3642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMPR1B|CCDS3642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	6	5	0	0	14	19	20	24	6	5	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693930288	4	99895564	CT	C	329	PASS	-	-	-	-	-	Del	-	D	99895564	99895572	1	15	322.716	-	-	7	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	2	4	5	6	19	31	19	31	5	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693939529	4	128120436	AT	A	420	PASS	-	-	-	-	-	Del	-	D	128120436	128120444	1	18	374.094	-	-	7	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	2	5	4	6	26	24	26	24	4	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693944164	4	141949702	A	AT	1140	PASS	RNF150	ENST00000306799	r.?	-	-	Ins	intronic	I	141949702	141949707	1	108	1008.69	-	-	4	1	1	RNF150|ENST00000306799|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF150|ENST00000306799|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	26	18	26	0	0	./.	11	8	15	12	44	34	44	35	15	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693944530	4	143147396	TAC	T	360	PASS	INPP4B	CCDS47112.1	r.?	-	-	Del	intronic	D	143147396	143147412	2	15	319.706	-	-	7	1	-	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	26	15	26	0	0	./.	2	4	2	4	26	36	26	36	2	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693944563	4	143260828	CATT	C	836	PASS	INPP4B	CCDS47112.1	r.?	-	-	Del	intronic	D	143260828	143260835	3	77	860.576	-	-	2	1	1	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	6	10	7	11	24	33	24	33	7	11	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693948411	4	155396618	CT	C	300	PASS	DCHS2	CCDS47150.1	r.?	-	-	Del	intronic	D	155396618	155396628	1	12	268.93	-	-	9	1	1	DCHS2|CCDS47150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCHS2|CCDS47150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	3	2	3	2	37	30	37	30	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693960244	4	186748214	T	TCATCATCACCATCATCATCATCAC	389	PASS	SORBS2	CCDS3845.1	r.?	-	-	Ins	intronic	I	186748214	186748235	24	14	272.948	-	-	0	1	-	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SORBS2|CCDS3845.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	1	6	0	0	51	44	51	45	1	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693963400	5	567557	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	567557	567576	2	18	373.455	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	2	6	2	33	23	33	23	6	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693967750	5	13148369	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	13148369	13148370	1	42	585.309	-	-	0	1	1	-	-	./.	0	0	0	0	13	15	13	16	0	0	./.	6	5	8	8	23	31	23	31	8	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693978010	5	40468247	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	40468247	40468265	2	12	269.333	-	-	8	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	2	3	3	3	25	32	25	32	3	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693980096	5	50878970	TC	T	300	PASS	-	-	-	-	-	Del	-	D	50878970	50878972	1	6	257.292	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	0	6	0	27	24	27	24	6	0	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693985463	5	66959887	G	GC	658	PASS	-	-	-	-	-	Ins	-	I	66959887	66959890	1	45	639.176	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	18	15	0	0	./.	8	4	10	6	28	35	29	35	10	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2693998920	5	110314105	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	110314105	110314106	1	24	479.382	-	-	0	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	7	2	10	6	36	27	37	27	10	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694013034	5	154322876	GCTCAGGCTGGTCTCTAACTCC	G	551	PASS	MRPL22	CCDS43391.1	r.?	-	-	Del	intronic	D	154322876	154322898	21	98	1023.47	-	-	1	1	1	MRPL22|CCDS43391.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MRPL22|CCDS43391.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	6	13	4	13	20	26	22	26	6	13	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694016476	5	164967056	GAA	G	960	PASS	-	-	-	-	-	Del	-	D	164967056	164967061	2	72	861.867	-	-	4	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	5	11	9	17	24	41	24	41	9	17	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694018270	5	170607622	CT	C	1109	PASS	RANBP17	CCDS34287.1	r.?	-	-	Del	intronic	D	170607622	170607629	1	108	1023.47	-	-	6	1	1	RANBP17|CCDS34287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP17|CCDS34287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	14	27	14	0	0	./.	8	11	11	12	32	27	32	27	11	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694018795	5	171966821	A	AT	517	PASS	-	-	-	-	-	Ins	-	I	171966821	171966823	1	24	479.382	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	7	2	9	3	39	17	40	18	9	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694024320	6	5919420	CT	C	720	PASS	AL136307.1	ENST00000510466	r.?	-	-	Del	intronic	D	5919420	5919426	1	33	646.444	-	-	5	1	1	AL136307.1|ENST00000510466|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL136307.1|ENST00000510466|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	2	10	3	12	28	34	28	34	3	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694029137	6	18054477	GGGAGGATGG	GCT	290	PASS	-	-	-	-	-	Complex	-	DI	18054478	18054486	9	35	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	6	4	0	0	34	20	34	20	6	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694052555	6	83203160	T	TAA	780	PASS	-	-	-	-	-	Ins	-	I	83203160	83203162	2	54	685.313	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	5	8	8	11	18	17	18	17	8	11	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694060534	6	114687037	GT	G	480	PASS	-	-	-	-	-	Del	-	D	114687037	114687039	1	25	428.354	-	-	1	1	1	-	-	./.	0	0	0	0	28	20	28	20	0	0	./.	4	4	9	7	20	14	20	14	9	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694082449	7	20932056	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	20932056	20932058	1	55	745.84	-	-	1	1	1	-	-	./.	0	0	0	0	32	13	32	13	0	0	./.	10	4	12	4	32	24	33	24	12	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694098862	7	67123853	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	67123853	67123863	1	28	469.835	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	6	3	8	7	34	33	34	33	8	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694106874	7	88968980	T	TA	1200	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Ins	downstream	I	88968980	88968982	1	120	1065.49	-	-	1	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	21	14	21	14	0	0	./.	11	9	17	11	37	34	38	35	17	11	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694109293	7	97210450	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	97210450	97210460	1	12	263.361	-	-	9	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	3	2	3	2	30	41	30	42	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694113809	7	109183901	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	109183901	109183910	1	11	532.743	-	-	8	1	1	-	-	./.	0	0	0	0	1	25	1	26	0	0	./.	0	10	0	12	0	27	0	27	0	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694114642	7	111968112	T	TA	1440	PASS	ZNF277	CCDS5755.2	r.?	-	-	Ins	intronic	I	111968112	111968114	1	160	1278.58	-	-	1	1	1	ZNF277|CCDS5755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF277|CCDS5755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	15	9	16	11	29	32	29	32	16	11	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694115303	7	114315683	TATC	T	600	PASS	FOXP2	CCDS43635.1	r.?	-	-	Del	intronic	D	114315683	114315692	3	20	538.763	-	-	2	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	17	4	17	0	0	./.	1	9	1	12	6	33	6	33	1	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694128272	7	152022335	C	CAAGCA	269	PASS	BAGE3	CCDS5931.1	r.?	-	-	Ins	intronic	I	152022335	152022342	5	10	253.728	-	-	1	1	1	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	4	1	5	1	36	25	36	27	5	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694132624	8	4093023	CAA	C	660	PASS	-	-	-	-	-	Del	-	D	4093023	4093027	2	42	593.268	-	-	3	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	6	5	7	8	24	38	24	38	7	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694141002	8	26246780	G	GA	360	PASS	BNIP3L	CCDS6050.1	r.?	-	-	Ins	intronic	I	26246780	26246790	1	15	318.182	-	-	9	1	1	BNIP3L|CCDS6050.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BNIP3L|CCDS6050.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	2	4	2	33	40	33	40	4	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694163243	8	97858803	TTC	T	300	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Del	intronic	D	97858803	97858821	2	10	269.667	-	-	8	1	1	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	7	29	7	0	0	./.	1	4	1	6	31	30	31	30	1	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694167569	8	111173166	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	111173166	111173174	1	15	295.906	-	-	7	1	1	-	-	./.	0	0	0	0	36	21	36	21	0	0	./.	2	4	8	9	35	38	35	38	8	10	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694199464	9	78165072	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	78165072	78165090	2	12	270.06	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	3	2	34	22	34	22	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694201998	9	86076357	AAACT	A	714	PASS	FRMD3	CCDS43840.1	r.?	-	-	Del	intronic	D	86076357	86076365	4	66	805.965	-	-	1	1	1	FRMD3|CCDS43840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD3|CCDS43840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	5	10	8	12	27	30	27	30	8	12	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694210162	9	111636134	G	GT	300	PASS	IKBKAP	CCDS6773.1	r.?	-	-	Ins	intronic	I	111636134	111636144	1	12	264.641	-	-	9	1	1	IKBKAP|CCDS6773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IKBKAP|CCDS6773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	2	3	2	4	42	41	42	41	2	4	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694210921	9	113593935	CA	C	300	PASS	-	-	-	-	-	Del	-	D	113593935	113593945	1	12	268.254	-	-	9	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	2	3	2	3	36	39	36	39	2	3	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694211815	9	115475971	T	TA	480	PASS	C9orf80	CCDS6785.1	r.?	-	-	Ins	intronic	I	115475971	115475980	1	21	426.677	-	-	8	1	1	C9orf80|CCDS6785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C9orf80|CCDS6785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	2	6	4	8	31	40	31	41	4	8	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694222125	X	6938591	G	GT	449	PASS	-	-	-	-	-	Ins	-	I	6938591	6938595	1	16	427.532	-	-	3	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	1	7	5	7	23	34	24	34	5	7	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694230048	X	37497302	TGA	T	300	PASS	LANCL3	CCDS14240.1	r.?	-	-	Del	intronic	D	37497302	37497319	2	10	269.616	-	-	8	1	-	LANCL3|CCDS14240.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LANCL3|CCDS14240.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	26	13	26	0	0	./.	4	1	4	1	34	35	34	35	4	1	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694236911	X	68938332	G	GT	300	PASS	EDA	CCDS14394.1	r.?	-	-	Ins	intronic	I	68938332	68938342	1	12	260.585	-	-	9	1	1	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	22	24	22	0	0	./.	3	2	3	2	33	36	33	37	3	2	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694238346	X	74235374	TTTCTGAGGCCTCTG	T	290	PASS	-	-	-	-	-	Del	-	D	74235374	74235394	14	36	540.435	-	-	1	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	5	5	8	6	30	35	30	35	8	6	1	1	1	1	1	1	1	1
2628046	PD13359a	PD13359b	2694251106	X	122704166	GC	G	960	PASS	-	-	-	-	-	Del	-	D	122704166	122704169	1	81	863.492	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	8	8	12	9	25	30	25	30	12	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689139427	1	17889529	T	TGA	360	PASS	ARHGEF10L	CCDS182.1	r.?	-	-	Ins	intronic	I	17889529	17889533	2	15	311.03	-	-	1	1	1	ARHGEF10L|CCDS182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ARHGEF10L|CCDS182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	4	2	4	9	20	9	20	2	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689143824	1	35066850	TA	T	420	PASS	-	-	-	-	-	Del	-	D	35066850	35066852	1	18	376.916	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	2	5	3	7	20	28	20	28	3	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689154158	1	73701178	AT	A	600	PASS	-	-	-	-	-	Del	-	D	73701178	73701180	1	20	536.646	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	9	1	11	1	29	21	29	21	11	1	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689154547	1	74967558	TTA	T	300	PASS	TNNI3K	CCDS44161.1	r.?	-	-	Del	intronic	D	74967558	74967575	2	12	268.624	-	-	8	1	1	TNNI3K|CCDS44161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNNI3K|CCDS44161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	3	2	19	25	19	25	3	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689158588	1	88910108	TAAAC	T	749	PASS	-	-	-	-	-	Del	-	D	88910108	88910116	4	56	698.181	-	-	1	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	6	7	10	8	36	45	36	45	10	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689159367	1	91771124	CT	C	360	PASS	HFM1	CCDS30769.2	r.?	-	-	Del	intronic	D	91771124	91771134	1	15	323.071	-	-	9	1	1	HFM1|CCDS30769.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HFM1|CCDS30769.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	2	6	4	33	14	33	14	6	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689161667	1	99751210	C	CA	540	PASS	ENSG00000117600	CCDS757.1	r.?	-	-	Ins	intronic	I	99751210	99751220	1	30	475.576	-	-	9	1	1	ENSG00000117600|CCDS757.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000117600|CCDS757.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	9	6	20	34	21	34	9	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689167420	1	119905358	GA	G	300	PASS	-	-	-	-	-	Del	-	D	119905358	119905366	1	12	269.226	-	-	7	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	3	2	3	4	25	32	25	32	3	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689174981	1	161937627	CA	C	1020	PASS	ATF6	CCDS1235.1	r.?	-	-	Del	downstream	D	161937627	161937629	1	88	915.368	-	-	1	1	1	ATF6|CCDS1235.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ATF6|CCDS1235.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	10	14	10	0	0	./.	10	7	11	8	28	22	28	22	11	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689176415	1	166633303	TACATTAGAAAAGAAAATAA	T	377	PASS	-	-	-	-	-	Del	-	D	166633303	166633324	19	54	696.977	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	5	8	6	8	31	33	31	33	6	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689178404	1	173261127	TA	T	300	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173261127	173261137	1	12	266.216	-	-	9	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	9	6	27	38	27	38	9	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689179424	1	177404151	TCTC	T	269	PASS	-	-	-	-	-	Del	-	D	177404151	177404158	3	12	268.022	-	-	2	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	2	3	3	6	27	25	27	25	3	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689184045	1	193238907	CAT	C	780	PASS	-	-	-	-	-	Del	-	D	193238907	193238911	2	50	699.987	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	9	4	11	7	27	27	27	27	11	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689188604	1	208608184	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	208608184	208608194	1	36	577.245	-	-	9	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	3	8	3	8	34	38	35	38	3	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689192260	1	220774238	T	TC	456	PASS	MARK1	CCDS31029.2	r.?	-	-	Ins	intronic	I	220774238	220774239	1	24	421.129	-	-	0	1	-	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	5	8	6	20	34	20	34	8	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689193986	1	226882062	C	CT	900	PASS	ITPKB	CCDS1555.1	r.?	-	-	Ins	intronic	I	226882062	226882067	1	72	798.647	-	-	4	1	1	ITPKB|CCDS1555.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITPKB|CCDS1555.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	8	7	9	11	26	31	26	31	9	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689194760	1	229405635	TCA	T	269	PASS	RAB4A	CCDS31050.1	r.?	-	-	Del	upstream	D	229405635	229405652	2	12	266.216	-	-	8	1	1	RAB4A|CCDS31050.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RAB4A|CCDS31050.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	7	17	7	0	0	./.	2	3	2	3	31	36	31	36	2	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689195292	1	231564158	CA	C	300	PASS	EGLN1	CCDS1595.1	r.?	-	-	Del	upstream	D	231564158	231564168	1	10	269.226	-	-	9	1	1	EGLN1|CCDS1595.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EGLN1|CCDS1595.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	7	13	7	0	0	./.	4	1	4	1	27	30	27	30	4	1	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689195349	1	231892854	TTGTATCAACA	T	261	PASS	DISC1	CCDS31055.1	r.?	-	-	Del	intronic	D	231892854	231892867	10	30	482.8	-	-	1	1	1	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	5	4	7	30	28	31	28	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689195684	1	233123819	TC	T	569	PASS	PCNXL2	CCDS44335.1	r.?	-	-	Del	intronic	D	233123819	233123821	1	32	533.635	-	-	1	1	1	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	7	6	12	22	30	22	30	6	12	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689202563	10	2908770	TG	T	420	PASS	ENSG00000214531	ENST00000398522	r.?	-	-	Del	intronic	D	2908770	2908773	1	20	377.483	-	-	2	1	1	ENSG00000214531|ENST00000398522|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000214531|ENST00000398522|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	4	6	5	37	22	37	22	7	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689203382	10	5211697	GA	G	629	PASS	AKR1CL1	ENST00000380510	r.?	-	-	Del	intronic	D	5211697	5211700	1	42	584.5	-	-	2	1	1	AKR1CL1|ENST00000380510|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKR1CL1|ENST00000380510|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	5	6	5	9	25	29	25	29	5	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689204272	10	7361614	CAG	C	360	PASS	SFMBT2	CCDS31138.1	r.?	-	-	Del	intronic	D	7361614	7361632	2	16	319.858	-	-	8	1	1	SFMBT2|CCDS31138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFMBT2|CCDS31138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	4	3	28	20	28	20	4	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689209392	10	24159218	ATC	A	600	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Del	intronic	D	24159218	24159224	2	36	538.315	-	-	2	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	5	5	8	6	26	33	26	33	8	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689210702	10	27832819	T	TAA	300	PASS	RAB18	CCDS7155.1	r.?	-	-	Ins	downstream	I	27832819	27832821	2	10	264.04	-	-	1	1	1	RAB18|CCDS7155.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	RAB18|CCDS7155.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	4	7	4	0	0	./.	4	1	4	1	18	24	18	24	4	1	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689211527	10	29980502	TAATA	T	569	PASS	SVIL	CCDS7164.1	r.?	-	-	Del	intronic	D	29980502	29980512	4	32	540.121	-	-	2	1	1	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	7	3	8	6	24	25	24	25	8	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689213902	10	38324794	C	CT	660	PASS	ZNF33A	CCDS44372.1	r.?	-	-	Ins	intronic	I	38324794	38324801	1	40	585.102	-	-	6	1	1	ZNF33A|CCDS44372.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF33A|CCDS44372.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	7	4	10	4	29	20	30	20	10	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689222126	10	66094794	GTGTAAGGGGGGA	G	290	PASS	-	-	-	-	-	Del	-	D	66094794	66094808	12	32	538.917	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	7	3	7	3	21	28	21	28	7	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689223689	10	70767737	T	TAG	540	PASS	KIAA1279	CCDS7284.1	r.?	-	-	Ins	intronic	I	70767737	70767741	2	24	475.272	-	-	1	1	1	KIAA1279|CCDS7284.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1279|CCDS7284.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	12	2	12	0	0	./.	2	7	5	9	13	31	14	33	5	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689223722	10	70858390	T	TA	480	PASS	SRGN	CCDS7285.1	r.?	-	-	Ins	intronic	I	70858390	70858398	1	25	426.678	-	-	7	1	1	SRGN|CCDS7285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRGN|CCDS7285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	4	6	6	30	31	30	31	6	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689223836	10	71100628	CTT	C	300	PASS	HK1	CCDS7290.1	r.?	-	-	Del	intronic	D	71100628	71100632	2	12	270.06	-	-	3	1	1	HK1|CCDS7290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HK1|CCDS7290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	5	5	18	15	18	15	5	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689224289	10	72694089	TG	T	389	PASS	-	-	-	-	-	Del	-	D	72694089	72694092	1	20	378.085	-	-	2	1	1	-	-	./.	0	0	0	0	4	14	4	14	0	0	./.	3	4	4	5	16	21	16	21	4	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689225740	10	78145853	AT	A	360	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	78145853	78145858	1	12	324.073	-	-	4	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	1	6	2	33	21	33	21	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689228604	10	88209087	ATG	A	360	PASS	WAPAL	CCDS7375.1	r.?	-	-	Del	intronic	D	88209087	88209092	2	16	324.073	-	-	2	1	1	WAPAL|CCDS7375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WAPAL|CCDS7375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	3	3	6	19	31	19	31	3	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689235627	10	111993338	TC	T	720	PASS	MXI1	CCDS7563.1	r.?	-	-	Del	intronic	D	111993338	111993342	1	48	646.941	-	-	3	1	1	MXI1|CCDS7563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MXI1|CCDS7563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	5	7	7	9	35	29	35	29	7	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689236909	10	116284283	G	GA	360	PASS	ABLIM1	CCDS31288.1	r.?	-	-	Ins	intronic	I	116284283	116284293	1	15	318.052	-	-	9	1	1	ABLIM1|CCDS31288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABLIM1|CCDS31288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	2	4	29	29	29	29	2	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689237318	10	117680122	T	TA	480	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Ins	intronic	I	117680122	117680125	1	24	424.872	-	-	2	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	13	0	0	./.	3	5	5	7	27	31	29	32	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689245752	11	9086088	GGA	G	418	PASS	SCUBE2	CCDS7797.1	r.?	-	-	Del	intronic	D	9086088	9086092	2	24	420.582	-	-	1	1	1	SCUBE2|CCDS7797.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCUBE2|CCDS7797.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	3	5	4	32	17	32	17	5	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689251430	11	26634735	ATTTG	A	540	PASS	ANO3	CCDS31447.1	r.?	-	-	Del	intronic	D	26634735	26634743	4	28	486.701	-	-	1	1	1	ANO3|CCDS31447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO3|CCDS31447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	6	3	8	6	23	34	23	34	8	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689254827	11	38318401	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	38318401	38318418	2	12	270.389	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	2	4	24	37	24	37	2	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689255008	11	38788441	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	38788441	38788451	1	12	264.369	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	15	10	0	0	./.	3	2	4	2	22	44	23	44	4	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689257178	11	46017969	TCA	T	600	PASS	PHF21A	CCDS44578.1	r.?	-	-	Del	intronic	D	46017969	46017973	2	36	540.779	-	-	1	1	1	PHF21A|CCDS44578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHF21A|CCDS44578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	5	5	6	7	23	27	23	27	6	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689258556	11	50033203	CA	C	420	PASS	-	-	-	-	-	Del	-	D	50033203	50033209	1	20	371.321	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	7	4	21	23	21	23	7	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689259295	11	56031948	AC	A	780	PASS	-	-	-	-	-	Del	-	D	56031948	56031950	1	56	703.013	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	6	7	10	36	41	36	41	7	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689261807	11	65192669	AACAG	A	478	PASS	-	-	-	-	-	Del	-	D	65192669	65192677	4	30	486.701	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	5	6	39	29	39	29	5	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689262754	11	67652297	GT	G	286	PASS	AP003716.3	ENST00000511677	r.?	-	-	Del	upstream	D	67652297	67652305	1	18	376.739	-	-	7	1	1	AP003716.3|ENST00000511677|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	AP003716.3|ENST00000511677|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	10	7	10	7	0	0	./.	5	2	6	5	37	33	37	33	6	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689263269	11	68837506	TG	T	540	PASS	TPCN2	CCDS8189.1	r.?	-	-	Del	intronic	D	68837506	68837508	1	10	474.058	-	-	1	1	1	TPCN2|CCDS8189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPCN2|CCDS8189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	9	0	22	0	108	69	108	69	22	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689263448	11	69335161	AAG	A	569	PASS	-	-	-	-	-	Del	-	D	69335161	69335180	2	35	534.758	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	6	5	7	71	71	71	71	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689266001	11	75424948	TTC	T	420	PASS	MOGAT2	CCDS8240.1	r.?	-	-	Del	upstream	D	75424948	75424966	2	20	378.545	-	-	8	1	1	MOGAT2|CCDS8240.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MOGAT2|CCDS8240.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	8	15	8	0	0	./.	3	4	4	5	61	71	61	71	4	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689266208	11	75867636	CA	C	356	PASS	-	-	-	-	-	Del	-	D	75867636	75867643	1	25	432.021	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	9	5	61	63	61	63	9	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689267981	11	79433068	GCTCATCAGGGCCTGATCCCAGCTTCCTTTCCATCCCAACTTGGTGTCTCCACCCAGATATACTTATTCATTTGCATCTCTAGAAATTCACACATTTGCCATCACCCATAGGCCTGTGAGTATGAGGATCTCTCTGCCTAGAAAAACATGCCTCCCCTGTTCTTACAAAAATCTCTTGCCTGCCTGACTTCGTTCATGCTCAGGATTCACGCAGTTATCGTCTCCTCTAGAAAGCTCCTTTGGCAACCAAAGGCTCACTCAGGTGCACACCCACCAGCCTCTTGCAGCATCTAATTTCTAATTTTACCTAGCATTTAGAAGTTTAGGTTGTGACAGTTTACTAAATGGTGTCAGGTTACTGTTTGATATTTTTATATATCTTATTTGTTTTAATTTTCAGTAACTAGTAGAGTTCCTGACTTATAGTAAGTGCTCAATAAATGTCTGATGCATTACTATATGGACTGAATGAATCAGCATAAGACAGGACAAGTGAATAATTTAGTCATGATCAAGCATTTTTATGCCAGGGACCTAGCTAAATTCATTACAAATAATTGCTCTGCATTTTTTGGCCCAGAGTCTGTCTTCTTGTGATGTAAACTGCTTTTCTTAATTCTCTAAACCCATTCCATTCTCAAGATTGTTTATTCTTCAGTCTTCTAGCTTGAGTTTCTGGTGTTTAATTATCAAAAATTATTTTGCTAGATAAGACCTGTTTGAGCTGACTTTCTTGAACTTGACTCTTAACTCATGTTAGAAGTCTGCCATAAACAACTGGAAAAGAAACCATGAAAGTAATCCCATTTACAATAGCTAGAAATAAAATAAAGTACCTAGAAATAAACTTTTAAAAAGTGAAACATTTCAATAATAAATACTACAACACATTGATAAAAGAAATTGAAGAGGATACAAAACATGAAAAGATATTCCACATTCATGGATTTGGAGAATCAATATTGTAAAAATGCTTATACTACCCAAAGCAATCTACAGATTCAGTACAATCCCTATAAAAATATTAATTACATTCTTCACAGAAATAGGAAAAAAAAATCCTAAGATTTATATAAAACCAATAAAGGGCCAGAATGGCCAAAGAAATGCTGAGCAAAAAGAATGCTGGAGGCACCACACTACCTGATTTCAAAATAAATTACAAGGTATGTAATCAAACCAGCATGGTATTAGCATAAAAATGAATACATGTATACCGATGAAACAGAAGACAGAACCCAGAAAGAAATCTACTCATTTAAAGTCAACTCTTTTTGACAAAGGTGTCAAGAATGTGCATTGAAGAAAGGACAGTCTCTTCAATAAATGGTGCTAGGAAAACTGGATATCCATACAGAGAAGAAAAAAACTAGACCTCTATCAGAAAACAGCCTAAAAAGGCAAATCTAAGATTTATTGGTCTTAAAGAAGAGGCAGAGAAAGAGACAGGGGTAGAAAGTTTA	G	1218	PASS	-	-	-	-	-	Del	-	D	79433068	79434535	1462	459	2270.07	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	16	26	0	0	31	24	47	50	16	26	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689268942	11	82130975	TC	T	960	PASS	-	-	-	-	-	Del	-	D	82130975	82130978	1	81	865.246	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	8	8	9	11	39	49	39	49	9	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689282106	11	133275331	GT	G	300	PASS	ENSG00000183715	CCDS31722.1	r.?	-	-	Del	intronic	D	133275331	133275337	1	12	268.583	-	-	5	1	1	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	5	3	29	24	29	24	5	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689288386	12	16062668	ATAG	A	865	PASS	DERA	CCDS44838.1	r.?	-	-	Del	upstream	D	16062668	16062676	3	90	918.558	-	-	2	1	1	DERA|CCDS44838.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DERA|CCDS44838.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	12	13	12	0	0	./.	8	9	15	13	33	35	33	35	15	13	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689288555	12	16508954	CAG	C	300	PASS	MGST1	CCDS8677.1	r.?	-	-	Del	intronic	D	16508954	16508972	2	10	268.96	-	-	8	1	1	MGST1|CCDS8677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGST1|CCDS8677.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	1	4	1	5	27	36	27	36	1	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689290540	12	21770910	G	GA	449	PASS	-	-	-	-	-	Ins	-	I	21770910	21770918	1	25	426.844	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	4	5	4	46	34	46	34	5	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689291945	12	25589033	GT	G	1049	PASS	-	-	-	-	-	Del	-	D	25589033	25589039	1	96	971.989	-	-	5	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	11	7	23	9	49	31	49	31	23	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689296375	12	41602681	G	GA	420	PASS	PDZRN4	ENST00000402685	r.?	-	-	Ins	intronic	I	41602681	41602690	1	20	374.015	-	-	8	1	1	PDZRN4|ENST00000402685|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDZRN4|ENST00000402685|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	16	0	0	./.	3	4	6	7	54	43	54	43	6	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689297087	12	43682162	C	CGT	300	PASS	-	-	-	-	-	Ins	-	I	43682162	43682182	2	10	263.541	-	-	9	1	-	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	1	6	2	46	35	46	35	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689298182	12	47737826	CA	C	360	PASS	-	-	-	-	-	Del	-	D	47737826	47737836	1	16	324.197	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	4	3	32	41	32	41	4	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689302147	12	60247508	T	TC	456	PASS	-	-	-	-	-	Ins	-	I	60247508	60247512	1	24	425.64	-	-	3	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	5	3	5	4	47	15	48	15	5	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689302624	12	61781190	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	61781190	61781199	1	16	425.038	-	-	8	1	1	-	-	./.	0	0	0	0	26	11	26	11	0	0	./.	7	1	8	2	41	41	41	41	8	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689307748	12	77481760	AC	A	420	PASS	-	-	-	-	-	Del	-	D	77481760	77481764	1	18	378.23	-	-	3	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	5	2	8	4	29	26	29	26	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689308445	12	79931730	TCA	T	478	PASS	-	-	-	-	-	Del	-	D	79931730	79931734	2	28	486.295	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	3	9	5	34	38	34	38	9	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689314314	12	97574478	TC	T	420	PASS	-	-	-	-	-	Del	-	D	97574478	97574480	1	8	372.209	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	7	0	12	0	38	42	38	42	12	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689316225	12	103926315	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	103926315	103926325	1	12	262.939	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	3	2	39	49	39	49	3	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689317624	12	107930316	AG	A	300	PASS	BTBD11	CCDS31893.1	r.?	-	-	Del	intronic	D	107930316	107930318	1	12	270.164	-	-	1	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	3	2	3	33	39	33	39	2	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689318570	12	110998212	AT	A	360	PASS	PPTC7	CCDS9149.1	r.?	-	-	Del	intronic	D	110998212	110998214	1	12	315.166	-	-	1	1	1	PPTC7|CCDS9149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPTC7|CCDS9149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	1	5	2	7	36	33	36	33	2	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689319789	12	115816354	CTTAATTTTGTTTTTACATAAATGCAATTGT	C	464	PASS	-	-	-	-	-	Del	-	D	115816354	115816386	30	80	864.525	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	9	7	8	8	23	35	24	35	9	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689328643	13	24569335	CA	C	600	PASS	-	-	-	-	-	Del	-	D	24569335	24569344	1	32	541.645	-	-	8	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	7	4	10	20	18	20	18	4	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689344909	13	82842769	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	82842769	82842778	1	28	483.146	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	6	4	7	19	26	19	26	4	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689346190	13	87647902	AT	A	420	PASS	-	-	-	-	-	Del	-	D	87647902	87647904	1	18	379.392	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	2	7	8	28	20	28	20	7	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689349458	13	99105473	AAGAG	A	300	PASS	FARP1	CCDS9487.1	r.?	-	-	Del	downstream	D	99105473	99105487	4	10	271.425	-	-	6	1	1	FARP1|CCDS9487.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	1	6	2	20	16	20	16	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689357544	14	29854666	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	29854666	29854676	1	28	482.064	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	6	3	6	4	33	30	34	30	6	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689358540	14	32914966	G	GT	300	PASS	AKAP6	CCDS9644.1	r.?	-	-	Ins	intronic	I	32914966	32914976	1	12	268.148	-	-	9	1	1	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AKAP6|CCDS9644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	2	30	42	30	42	3	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689362885	14	46359560	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	46359560	46359576	2	15	325.389	-	-	7	1	-	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	4	2	39	45	39	45	4	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689363052	14	46878374	TC	T	660	PASS	-	-	-	-	-	Del	-	D	46878374	46878376	1	36	596.547	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	8	3	8	5	39	20	39	20	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689363611	14	48547933	GT	G	1140	PASS	-	-	-	-	-	Del	-	D	48547933	48547936	1	110	1029.8	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	10	9	15	16	31	35	31	35	15	16	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689369390	14	65885343	GAGAT	G	509	PASS	FUT8	CCDS9775.1	r.?	-	-	Del	intronic	D	65885343	65885351	4	28	486.278	-	-	1	1	1	FUT8|CCDS9775.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FUT8|CCDS9775.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	6	3	6	5	22	23	22	23	6	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689373747	14	79414439	CA	C	900	PASS	NRXN3	CCDS9870.1	r.?	-	-	Del	intronic	D	79414439	79414443	1	70	813.474	-	-	3	1	1	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	9	6	11	8	22	28	22	28	11	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689374460	14	82020762	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	82020762	82020771	1	16	304.919	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	3	8	7	38	32	38	32	8	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689381270	14	103712417	GATGTCTTCGTC	G	319	PASS	-	-	-	-	-	Del	-	D	103712417	103712429	11	40	589.323	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	7	7	12	28	22	28	22	7	12	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689384134	15	22817689	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	22817689	22817697	1	12	268.548	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	19	12	0	0	./.	2	3	3	3	21	32	21	32	3	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689386057	15	29209711	AT	A	463	PASS	APBA2	CCDS10022.1	r.?	-	-	Del	upstream	D	29209711	29209721	1	28	488.805	-	-	9	1	1	APBA2|CCDS10022.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	APBA2|CCDS10022.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	4	12	4	0	0	./.	6	3	8	5	22	20	22	20	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689386904	15	32335511	T	TA	298	PASS	CHRNA7	CCDS10027.1	r.?	-	-	Ins	intronic	I	32335511	32335519	1	15	321.053	-	-	7	1	1	CHRNA7|CCDS10027.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHRNA7|CCDS10027.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	9	0	0	./.	4	2	7	7	23	33	23	33	7	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689402618	15	85835212	CCT	C	277	PASS	-	-	-	-	-	Del	-	D	85835212	85835231	2	12	270.956	-	-	9	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	2	3	2	2	27	30	27	30	2	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689408200	16	1715408	TTG	T	720	PASS	CRAMP1L	CCDS10440.2	r.?	-	-	Del	intronic	D	1715408	1715414	2	45	646.55	-	-	2	1	1	CRAMP1L|CCDS10440.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRAMP1L|CCDS10440.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	8	5	10	19	30	19	30	5	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689411351	16	11003556	TC	T	540	PASS	CIITA	CCDS10544.1	r.?	-	-	Del	intronic	D	11003556	11003559	1	28	485.364	-	-	2	1	1	CIITA|CCDS10544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CIITA|CCDS10544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	20	6	20	0	0	./.	3	6	3	7	15	25	15	25	3	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689412096	16	12958256	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	12958256	12958259	1	32	536.685	-	-	2	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	7	4	7	17	23	18	23	4	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689417127	16	31658166	A	AT	387	PASS	-	-	-	-	-	Ins	-	I	31658166	31658175	1	21	427.421	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	6	5	10	18	34	18	35	5	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689418440	16	33534938	CTCA	CCG	269	PASS	-	-	-	-	-	Complex	-	DI	33534939	33534941	3	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	29	14	29	14	0	0	./.	6	3	0	0	72	53	72	53	6	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689419387	16	34358560	GA	G	720	PASS	-	-	-	-	-	Del	-	D	34358560	34358565	1	49	651.367	-	-	4	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	6	8	11	25	34	25	34	8	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689420615	16	50105691	CAT	C	1020	PASS	HEATR3	CCDS10739.1	r.?	-	-	Del	intronic	D	50105691	50105694	2	88	923.622	-	-	1	1	1	HEATR3|CCDS10739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HEATR3|CCDS10739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	7	10	8	13	16	17	16	17	8	13	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689423346	16	61243874	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	61243874	61243883	1	42	591.015	-	-	8	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	5	6	7	7	23	29	23	29	7	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689426985	16	76429130	A	AT	629	PASS	CNTNAP4	ENST00000307431	r.?	-	-	Ins	intronic	I	76429130	76429139	1	42	589.209	-	-	8	1	1	CNTNAP4|ENST00000307431|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP4|ENST00000307431|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	15	16	0	0	./.	5	6	7	7	21	22	21	22	7	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689447188	17	56493763	AATTAG	A	420	PASS	RNF43	CCDS11607.1	r.?	-	-	Del	intronic	D	56493763	56493770	5	20	377.142	-	-	1	1	1	RNF43|CCDS11607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RNF43|CCDS11607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	5	5	23	24	23	24	5	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689448330	17	60612763	AT	A	480	PASS	TLK2	CCDS11633.1	r.?	-	-	Del	intronic	D	60612763	60612768	1	24	434.46	-	-	4	1	1	TLK2|CCDS11633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLK2|CCDS11633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	7	10	24	29	24	29	7	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689456705	18	5090251	GC	G	720	PASS	-	-	-	-	-	Del	-	D	5090251	5090253	1	48	651.921	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	7	7	10	14	18	14	18	7	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689462913	18	31924322	AG	A	540	PASS	-	-	-	-	-	Del	-	D	31924322	31924325	1	24	486.382	-	-	2	1	1	-	-	./.	0	0	0	0	9	23	9	23	0	0	./.	2	7	3	10	9	28	9	28	3	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689477944	19	7274136	CG	C	660	PASS	INSR	CCDS12176.1	r.?	-	-	Del	intronic	D	7274136	7274138	1	36	597.268	-	-	1	1	1	INSR|CCDS12176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INSR|CCDS12176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	8	7	12	26	28	26	28	7	12	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689479361	19	10764865	GC	G	420	PASS	ILF3	CCDS45965.1	r.?	-	-	Del	upstream	D	10764865	10764874	1	18	379.642	-	-	8	1	1	ILF3|CCDS45965.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ILF3|CCDS45965.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	6	9	6	9	0	0	./.	2	5	2	5	19	15	19	15	2	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689487146	19	39185486	G	GC	360	PASS	ACTN4	CCDS12518.1	r.?	-	-	Ins	intronic	I	39185486	39185493	1	7	316.806	-	-	6	1	1	ACTN4|CCDS12518.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACTN4|CCDS12518.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	6	0	9	0	35	8	35	8	9	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689488155	19	43438139	T	TA	506	PASS	PSG1	ENST00000449000	r.?	-	-	Ins	intronic	I	43438139	43438143	1	30	483.638	-	-	3	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	5	5	5	22	34	22	34	5	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689490289	19	50790201	CCT	C	351	PASS	MYH14	CCDS46151.1	r.?	-	-	Del	intronic	D	50790201	50790204	2	20	380.846	-	-	1	1	1	MYH14|CCDS46151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYH14|CCDS46151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	4	5	5	26	21	26	21	5	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689493118	2	868697	AT	A	420	PASS	-	-	-	-	-	Del	-	D	868697	868706	1	20	375.743	-	-	8	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	4	3	7	5	26	20	26	20	7	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689494446	2	5534814	CG	C	480	PASS	-	-	-	-	-	Del	-	D	5534814	5534821	1	9	427.787	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	0	8	3	8	14	25	14	25	3	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689503975	2	37306447	G	GT	778	PASS	HEATR5B	CCDS33181.1	r.249_250insa	c.153_154insA	p.L52fs*3	Ins	frameshift	I	37306447	37306454	1	64	739.445	-	-	6	1	1	HEATR5B|CCDS33181.1|r.249_250insa|c.153_154insA|p.L52fs*3|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	HEATR5B|CCDS33181.1|r.249_250insa|c.153_154insA|p.L52fs*3|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	10	12	10	12	0	0	./.	7	7	8	10	20	35	20	35	8	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689506296	2	45071197	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	45071197	45071207	1	12	266.238	-	-	9	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	3	2	5	3	21	21	21	22	5	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689509513	2	56289755	AT	A	517	PASS	-	-	-	-	-	Del	-	D	56289755	56289765	1	30	482.238	-	-	9	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	5	4	5	4	23	27	23	27	5	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689524078	2	113630932	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	113630932	113630941	1	10	264.432	-	-	8	1	1	-	-	./.	0	0	0	0	22	13	23	13	0	0	./.	4	1	7	3	40	22	41	22	7	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689527300	2	125509975	CA	C	840	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	125509975	125509978	1	60	753.292	-	-	2	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	9	5	11	6	27	18	27	18	11	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689527368	2	125795834	TG	T	720	PASS	-	-	-	-	-	Del	-	D	125795834	125795838	1	49	646.195	-	-	3	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	6	6	7	7	31	16	31	16	7	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689529942	2	133404526	C	CA	480	PASS	GPR39	CCDS2170.1	r.?	-	-	Ins	downstream	I	133404526	133404535	1	24	425.378	-	-	8	1	1	GPR39|CCDS2170.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	LYPD1|CCDS42759.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	5	3	9	5	28	25	28	26	9	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689535662	2	153211379	CG	C	1020	PASS	FMNL2	CCDS46429.1	r.?	-	-	Del	intronic	D	153211379	153211382	1	88	911.229	-	-	2	1	1	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	7	10	7	10	28	37	28	37	7	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689536205	2	154922904	CA	C	480	PASS	GALNT13	CCDS2199.1	r.?	-	-	Del	intronic	D	154922904	154922907	1	24	427.184	-	-	2	1	1	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	5	9	9	42	36	42	36	9	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689537103	2	158466213	TATA	T	478	PASS	ACVR1C	CCDS2205.1	r.?	-	-	Del	intronic	D	158466213	158466221	3	30	484.044	-	-	2	1	1	ACVR1C|CCDS2205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACVR1C|CCDS2205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	11	5	35	27	35	27	11	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689537396	2	159468627	GCA	G	269	PASS	PKP4	CCDS33306.1	r.?	-	-	Del	intronic	D	159468627	159468646	2	6	263.829	-	-	9	1	-	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	0	5	0	31	30	31	30	5	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689537579	2	159990445	ATTGGATTATTT	A	377	PASS	TANC1	CCDS42766.1	r.?	-	-	Del	intronic	D	159990445	159990459	11	50	700.045	-	-	1	1	1	TANC1|CCDS42766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC1|CCDS42766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	9	4	9	4	25	32	25	32	9	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689540011	2	169187194	AAGGAATCCCCATCAGACTTAACAGTGGATTTCTCAGCAGAAACTGTACAG	AAAG	319	PASS	-	-	-	-	-	Complex	-	DI	169187195	169187244	50	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	9	2	0	0	32	11	38	12	9	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689541964	2	174852626	GAAACA	G	567	PASS	-	-	-	-	-	Del	-	D	174852626	174852639	5	36	592.346	-	-	2	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	3	8	4	9	17	33	17	33	4	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689547156	2	192989409	AAC	A	1020	PASS	TMEFF2	CCDS2314.1	r.?	-	-	Del	intronic	D	192989409	192989415	2	78	915.443	-	-	2	1	1	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	12	5	13	7	33	32	33	32	13	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689551073	2	206380282	C	CGCATTGTGGTTTTGATTTGCATTTCTCTAATTATCA	290	PASS	PARD3B	CCDS42806.1	r.?	-	-	Ins	intronic	I	206380282	206380285	36	35	321.754	-	-	0	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	6	0	0	18	30	23	36	4	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689553662	2	215098794	TG	T	540	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	215098794	215098796	1	30	476.218	-	-	1	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	4	6	7	24	23	24	23	6	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689560535	2	238071967	AC	A	360	PASS	-	-	-	-	-	Del	-	D	238071967	238071969	1	12	323.098	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	5	3	7	28	29	28	29	3	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689560553	2	238175410	GAGTC	G	360	PASS	-	-	-	-	-	Del	-	D	238175410	238175416	4	15	323.098	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	2	5	3	34	30	34	30	5	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689561036	2	240087178	C	CTG	720	PASS	HDAC4	CCDS2529.1	r.?	-	-	Ins	intronic	I	240087178	240087196	2	48	625.123	-	-	8	1	1	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	7	10	7	30	28	30	28	10	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689565201	20	11307841	TTTTG	T	420	PASS	-	-	-	-	-	Del	-	D	11307841	11307857	4	18	379.533	-	-	3	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	2	5	2	6	32	29	32	29	2	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689568073	20	21292474	C	CA	263	PASS	XRN2	CCDS13144.1	r.?	-	-	Ins	intronic	I	21292474	21292484	1	12	268.514	-	-	9	1	1	XRN2|CCDS13144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XRN2|CCDS13144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	13	0	0	./.	3	2	6	3	25	15	25	16	6	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689571434	20	30888245	A	AT	418	PASS	KIF3B	CCDS13200.1	r.?	-	-	Ins	intronic	I	30888245	30888252	1	21	425.409	-	-	6	1	1	KIF3B|CCDS13200.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIF3B|CCDS13200.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	6	2	6	32	33	32	33	2	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689574231	20	39000134	T	TC	660	PASS	-	-	-	-	-	Ins	-	I	39000134	39000141	1	36	590.732	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	8	3	11	4	27	25	27	25	11	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689577672	20	49149857	TTTC	T	687	PASS	PTPN1	CCDS13430.1	r.?	-	-	Del	intronic	D	49149857	49149863	3	54	705.362	-	-	1	1	1	PTPN1|CCDS13430.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN1|CCDS13430.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	5	8	9	11	66	96	66	96	9	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689577700	20	49208826	T	TA	780	PASS	FAM65C	CCDS13431.2	r.?	-	-	Ins	intronic	I	49208826	49208828	1	54	698.138	-	-	1	1	1	FAM65C|CCDS13431.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM65C|CCDS13431.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	8	5	11	11	80	74	81	74	11	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689577713	20	49237670	AAG	A	269	PASS	FAM65C	CCDS13431.2	r.?	-	-	Del	intronic	D	49237670	49237674	2	6	262.494	-	-	1	1	1	FAM65C|CCDS13431.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM65C|CCDS13431.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	0	10	0	75	55	75	55	10	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689578943	20	50907952	TGC	T	360	PASS	-	-	-	-	-	Del	-	D	50907952	50907959	2	15	324.626	-	-	3	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	2	8	4	115	106	115	106	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689579256	20	51308607	TTG	T	329	PASS	-	-	-	-	-	Del	-	D	51308607	51308611	2	7	301.747	-	-	1	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	6	0	14	0	140	162	140	162	14	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689579552	20	51803440	AAT	A	420	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	51803440	51803459	2	18	379.533	-	-	9	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	5	2	6	4	114	100	114	100	6	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689579601	20	51864619	TG	T	749	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	51864619	51864621	1	44	704.76	-	-	1	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	10	3	14	8	165	122	165	122	14	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689580710	20	53427386	G	GGT	445	PASS	-	-	-	-	-	Ins	-	I	53427386	53427387	2	27	528.6	-	-	0	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	8	0	0	16	47	16	48	2	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689581288	20	54432779	CT	C	360	PASS	-	-	-	-	-	Del	-	D	54432779	54432781	1	15	325.83	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	4	3	6	38	49	38	49	3	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689581779	20	55469768	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	55469768	55469784	2	12	271.525	-	-	7	1	-	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	3	2	3	3	24	36	24	36	3	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689597599	21	43379952	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	43379952	43379959	1	18	484.524	-	-	6	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	1	8	4	9	16	31	16	31	4	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689605471	22	38049265	GTC	G	480	PASS	SH3BP1	CCDS13952.2	r.?	-	-	Del	intronic	D	38049265	38049271	2	24	435.349	-	-	2	1	1	SH3BP1|CCDS13952.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3BP1|CCDS13952.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	5	8	20	32	20	32	5	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689609023	22	50267482	TGCACGGCCCACCTTGTAGGTTGGAG	TGACCCACCTTGTAGGTTGGAGG	261	PASS	ZBED4	CCDS33677.1	r.?	-	-	Complex	intronic	DI	50267483	50267507	25	30	0	-	-	0	1	1	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	5	0	0	18	18	18	19	4	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689609596	3	1005193	GCTTGCACTCC	G	319	PASS	-	-	-	-	-	Del	-	D	1005193	1005205	10	42	593.3	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	6	5	5	37	31	37	32	5	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689610686	3	4313671	ATC	A	480	PASS	-	-	-	-	-	Del	-	D	4313671	4313677	2	25	431.491	-	-	2	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	4	4	6	4	34	22	34	22	6	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689614886	3	18726777	GAACT	G	569	PASS	-	-	-	-	-	Del	-	D	18726777	18726784	4	32	539.363	-	-	1	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	3	7	3	8	34	32	34	32	3	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689614997	3	19263057	G	GT	300	PASS	KCNH8	CCDS2632.1	r.?	-	-	Ins	intronic	I	19263057	19263067	1	10	260.651	-	-	9	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	1	4	30	48	30	48	1	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689617277	3	27574873	GA	G	420	PASS	-	-	-	-	-	Del	-	D	27574873	27574880	1	14	372.136	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	6	4	8	25	20	25	20	4	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689621657	3	43841793	AT	A	420	PASS	-	-	-	-	-	Del	-	D	43841793	43841803	1	20	377.554	-	-	9	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	3	4	3	4	23	27	23	27	3	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689623791	3	52770230	C	CG	420	PASS	NEK4	CCDS2863.1	r.?	-	-	Ins	intronic	I	52770230	52770238	1	20	369.125	-	-	7	1	1	NEK4|CCDS2863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEK4|CCDS2863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	3	4	8	5	24	28	24	28	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689629249	3	71413541	A	AC	840	PASS	FOXP1	CCDS2914.1	r.?	-	-	Ins	intronic	I	71413541	71413544	1	60	745.476	-	-	2	1	1	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	10	11	0	0	./.	9	5	12	7	24	17	24	17	12	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689630085	3	74187342	AAAAT	AATT	838	PASS	-	-	-	-	-	Complex	-	DI	74187343	74187346	4	70	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	6	9	0	0	29	33	29	33	6	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689633177	3	81877772	AG	A	360	PASS	-	-	-	-	-	Del	-	D	81877772	81877774	1	12	323.618	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	2	6	23	30	23	30	2	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689636763	3	98125855	GA	G	300	PASS	-	-	-	-	-	Del	-	D	98125855	98125857	1	10	267.273	-	-	1	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	1	4	1	5	20	22	20	22	1	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689637757	3	101577871	T	TA	480	PASS	NFKBIZ	CCDS2946.1	r.?	-	-	Ins	intronic	I	101577871	101577873	1	25	426.674	-	-	1	1	1	NFKBIZ|CCDS2946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFKBIZ|CCDS2946.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	4	6	8	24	29	24	30	6	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689640470	3	110193849	TA	T	749	PASS	-	-	-	-	-	Del	-	D	110193849	110193859	1	54	694.55	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	8	5	10	5	32	34	32	34	10	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689650367	3	145552118	GTGA	G	259	PASS	-	-	-	-	-	Del	-	D	145552118	145552128	3	36	539.363	-	-	3	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	5	2	7	26	34	30	34	6	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689650752	3	146895166	TTA	T	360	PASS	-	-	-	-	-	Del	-	D	146895166	146895170	2	15	322.414	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	2	4	4	32	18	32	18	4	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689652208	3	151576713	TA	T	420	PASS	-	-	-	-	-	Del	-	D	151576713	151576719	1	20	377.554	-	-	5	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	4	6	4	20	14	20	14	6	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689655189	3	162250572	TA	T	720	PASS	-	-	-	-	-	Del	-	D	162250572	162250576	1	48	646.032	-	-	3	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	7	5	8	12	23	12	23	5	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689656707	3	167125400	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	167125400	167125407	1	30	479.406	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	14	0	0	./.	5	4	5	7	21	30	21	30	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689657821	3	171366900	C	CT	840	PASS	PLD1	CCDS46957.1	r.?	-	-	Ins	intronic	I	171366900	171366910	1	48	744.272	-	-	9	1	1	PLD1|CCDS46957.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLD1|CCDS46957.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	11	6	13	23	35	23	35	6	13	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689660115	3	178916937	TGAA	T	569	PASS	PIK3CA	CCDS43171.1	r.482_484delGAA	c.325_327delGAA	p.E110delE	Del	inframe	D	178916937	178916944	3	35	539.363	-	-	2	1	1	PIK3CA|CCDS43171.1|r.482_484delGAA|c.325_327delGAA|p.E110delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	PIK3CA|CCDS43171.1|r.482_484delGAA|c.325_327delGAA|p.E110delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	8	11	8	11	0	0	./.	6	4	7	5	18	27	18	27	7	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689660411	3	179937641	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	179937641	179937661	2	20	363.707	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	4	3	8	39	35	39	35	3	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689664004	3	191832593	C	CT	960	PASS	-	-	-	-	-	Ins	-	I	191832593	191832603	1	72	849.134	-	-	9	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	5	11	8	15	31	51	32	51	8	15	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689667331	4	4217837	T	TG	400	PASS	OTOP1	CCDS3372.1	r.?	-	-	Ins	intronic	I	4217837	4217838	1	28	739.511	-	-	0	1	1	OTOP1|CCDS3372.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OTOP1|CCDS3372.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	1	13	0	0	25	40	25	40	1	13	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689670300	4	14596905	AG	A	420	PASS	-	-	-	-	-	Del	-	D	14596905	14596908	1	20	377.281	-	-	2	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	4	3	8	5	29	21	29	21	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689672448	4	22356646	C	CA	749	PASS	-	-	-	-	-	Ins	-	I	22356646	22356654	1	56	692.839	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	6	8	7	30	22	30	22	8	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689677591	4	38950495	C	CA	540	PASS	FAM114A1	CCDS3447.1	r.?	-	-	Ins	downstream	I	38950495	38950502	1	24	477.851	-	-	6	1	1	FAM114A1|CCDS3447.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	FAM114A1|CCDS3447.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	2	7	3	7	14	26	14	26	3	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689679132	4	43312705	AT	A	780	PASS	-	-	-	-	-	Del	-	D	43312705	43312715	1	56	700.666	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	7	6	10	8	26	32	26	32	10	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689684562	4	61989234	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	61989234	61989241	1	18	373.067	-	-	6	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	5	2	6	2	33	5	34	5	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689685071	4	63791395	AT	A	689	PASS	-	-	-	-	-	Del	-	D	63791395	63791400	1	49	646.768	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	6	9	6	26	23	26	23	9	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689685605	4	65393973	CA	C	360	PASS	-	-	-	-	-	Del	-	D	65393973	65393977	1	15	321.578	-	-	3	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	2	7	4	34	20	34	20	7	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689687616	4	71594431	CTG	C	418	PASS	RUFY3	CCDS3547.1	r.?	-	-	Del	intronic	D	71594431	71594435	2	24	430.577	-	-	1	1	1	RUFY3|CCDS3547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUFY3|CCDS3547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	3	5	5	5	22	20	22	20	5	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689699957	4	114918037	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	114918037	114918044	1	28	479.658	-	-	6	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	3	8	4	32	19	32	19	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689700791	4	117406984	AT	A	960	PASS	-	-	-	-	-	Del	-	D	117406984	117406988	1	80	861.755	-	-	3	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	9	7	14	8	34	36	34	36	14	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689702280	4	121989872	CAG	C	300	PASS	C4orf31	CCDS3717.2	r.?	-	-	Del	intronic	D	121989872	121989891	2	10	268.885	-	-	9	1	1	C4orf31|CCDS3717.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C4orf31|CCDS3717.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	1	4	1	4	18	36	18	36	1	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689710406	4	151032297	A	AT	540	PASS	DCLK2	CCDS34076.1	r.?	-	-	Ins	intronic	I	151032297	151032307	1	28	476.647	-	-	9	1	1	DCLK2|CCDS34076.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCLK2|CCDS34076.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	6	3	9	6	32	24	32	24	9	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689711945	4	156100493	GT	G	807	PASS	-	-	-	-	-	Del	-	D	156100493	156100495	1	70	807.858	-	-	1	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	9	6	9	8	34	39	34	39	9	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689714315	4	162890960	T	TA	540	PASS	FSTL5	CCDS3802.1	r.?	-	-	Ins	intronic	I	162890960	162890968	1	30	477.249	-	-	7	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	4	5	6	8	26	33	26	33	6	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689715110	4	165223061	GA	G	600	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	165223061	165223065	1	27	538.371	-	-	3	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	8	2	9	3	24	14	24	14	9	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689716764	4	170621090	C	CT	780	PASS	CLCN3	CCDS34100.1	r.?	-	-	Ins	intronic	I	170621090	170621098	1	54	689.226	-	-	7	1	1	CLCN3|CCDS34100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLCN3|CCDS34100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	8	8	11	33	23	34	23	8	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689716933	4	171127962	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	171127962	171127980	2	12	269.487	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	3	13	29	13	29	2	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689719733	4	180077688	CA	C	420	PASS	-	-	-	-	-	Del	-	D	180077688	180077695	1	18	377.281	-	-	6	1	1	-	-	./.	0	0	0	0	2	13	2	13	0	0	./.	2	5	4	5	11	28	11	28	4	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689729934	5	14480126	GAGGTGGCGGGACAAACTCTGGTGTCAGGAGTGAGTTTGCTGAG	GTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA	420	PASS	TRIO	CCDS3883.1	r.6360+7_6360+49del43insuggcgggacagacucuggugucaggagugaguuugcugaa	c.6336+7_6336+49del43insTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA	p.?	Complex	splice region	DI	14480127	14480169	43	18	0	-	-	0	1	1	TRIO|CCDS3883.1|r.6360+7_6360+49del43insuggcgggacagacucuggugucaggagugaguuugcugaa|c.6336+7_6336+49del43insTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:indel:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:1000032:SO:CGPX04:SO:0001627:SO:0001576	TRIO|CCDS3883.1|r.6360+7_6360+49del43insuggcgggacagacucuggugucaggagugaguuugcugaa|c.6336+7_6336+49del43insTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:indel:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:1000032:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	6	4	6	4	0	0	./.	5	2	0	0	29	17	34	19	5	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689733355	5	24008848	TC	T	480	PASS	-	-	-	-	-	Del	-	D	24008848	24008850	1	21	431.365	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	2	6	4	39	27	39	27	6	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689739623	5	41375316	CA	C	509	PASS	PLCXD3	CCDS34150.1	r.?	-	-	Del	intronic	D	41375316	41375321	1	28	484.683	-	-	4	1	1	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	3	8	4	47	24	47	24	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689740418	5	43880928	T	TAGATG	418	PASS	-	-	-	-	-	Ins	-	I	43880928	43880936	5	24	407.282	-	-	1	1	1	-	-	./.	0	0	0	0	16	4	17	4	0	0	./.	5	3	6	3	37	24	37	25	6	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689740649	5	44751345	TTCTA	T	718	PASS	-	-	-	-	-	Del	-	D	44751345	44751353	4	50	696.151	-	-	1	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	4	9	6	11	38	49	38	49	6	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689741356	5	50223117	A	AAC	269	PASS	-	-	-	-	-	Ins	-	I	50223117	50223119	2	6	258.766	-	-	0	1	-	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	0	1	0	42	27	46	28	5	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689742422	5	53341052	AAC	A	360	PASS	-	-	-	-	-	Del	-	D	53341052	53341070	2	15	322.319	-	-	8	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	2	4	3	5	38	28	38	28	3	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689744405	5	59183566	TTG	T	360	PASS	PDE4D	CCDS47213.1	r.?	-	-	Del	intronic	D	59183566	59183586	2	16	319.911	-	-	9	1	-	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	3	3	4	3	37	39	37	39	4	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689745450	5	62930923	AT	A	300	PASS	-	-	-	-	-	Del	-	D	62930923	62930931	1	10	268.399	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	2	5	49	36	49	36	2	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689745532	5	63283927	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	63283927	63283946	2	12	269.001	-	-	9	1	-	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	3	2	43	37	43	37	3	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689745737	5	64037827	TG	T	300	PASS	SFRS12IP1	CCDS34171.1	r.?	-	-	Del	intronic	D	64037827	64037829	1	6	262.98	-	-	1	1	1	SFRS12IP1|CCDS34171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS12IP1|CCDS34171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	0	8	0	42	31	42	31	8	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689746532	5	66296593	GT	G	300	PASS	MAST4	CCDS47225.1	r.?	-	-	Del	intronic	D	66296593	66296595	1	6	263.582	-	-	1	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	5	0	5	0	32	24	32	24	5	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689748530	5	73432823	TATTTTTTGAA	T	348	PASS	-	-	-	-	-	Del	-	D	73432823	73432834	10	48	647.047	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	5	8	6	41	35	41	35	8	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689749710	5	77391138	TATGATGTGCCTCTTAGATA	T	406	PASS	AP3B1	CCDS4041.1	r.?	-	-	Del	intronic	D	77391138	77391159	19	63	754.286	-	-	1	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	6	8	5	5	34	33	35	36	6	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689751850	5	83794133	CAATT	C	329	PASS	-	-	-	-	-	Del	-	D	83794133	83794141	4	12	323.524	-	-	1	1	1	-	-	./.	0	0	0	0	13	0	13	0	0	0	./.	5	1	5	1	23	4	23	4	5	1	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689752367	5	84975783	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	84975783	84975791	1	10	266.593	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	18	0	0	./.	1	4	2	6	23	37	25	40	2	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689752760	5	86158276	T	TATG	629	PASS	-	-	-	-	-	Ins	-	I	86158276	86158281	3	36	570.248	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	16	13	0	0	./.	3	8	3	9	32	51	32	52	3	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689754881	5	94720981	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	94720981	94720988	1	32	533.185	-	-	6	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	7	7	13	41	47	41	47	7	13	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689758395	5	105468064	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	105468064	105468073	1	28	478.663	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	3	6	6	11	25	28	26	28	6	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689765400	5	127392684	TA	T	360	PASS	-	-	-	-	-	Del	-	D	127392684	127392691	1	12	322.922	-	-	6	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	1	5	6	6	35	41	35	41	6	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689766390	5	131083810	TAGAG	T	449	PASS	FNIP1	CCDS34226.1	r.?	-	-	Del	intronic	D	131083810	131083817	4	21	431.365	-	-	3	1	1	FNIP1|CCDS34226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNIP1|CCDS34226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	2	6	2	6	25	42	25	42	2	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689769540	5	142331728	C	CT	420	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Ins	intronic	I	142331728	142331737	1	20	371.424	-	-	8	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	8	6	36	35	38	36	8	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689771416	5	148740732	GAGGCCAAGGC	G	319	PASS	PCYOX1L	CCDS4296.1	r.?	-	-	Del	intronic	D	148740732	148740746	10	42	593.127	-	-	1	1	1	PCYOX1L|CCDS4296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCYOX1L|CCDS4296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	6	5	6	5	27	30	27	30	6	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689775482	5	161952502	GC	G	360	PASS	-	-	-	-	-	Del	-	D	161952502	161952506	1	15	322.922	-	-	3	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	2	6	2	40	27	40	27	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689777454	5	167804646	AAAG	A	1138	PASS	WWC1	CCDS4366.1	r.?	-	-	Del	intronic	D	167804646	167804654	3	117	1077.21	-	-	2	1	1	WWC1|CCDS4366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWC1|CCDS4366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	8	12	14	17	33	41	33	41	14	17	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689786525	6	13877019	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	13877019	13877029	1	12	257.258	-	-	9	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	6	2	39	31	41	31	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689787067	6	15628384	ATTA	AAT	480	PASS	DTNBP1	CCDS4535.1	r.?	-	-	Complex	intronic	DI	15628385	15628387	3	24	0	-	-	0	1	1	DTNBP1|CCDS4535.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	DTNBP1|CCDS4535.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	3	5	0	0	22	21	22	21	3	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689794779	6	37335659	AC	A	420	PASS	RNF8	CCDS4834.1	r.?	-	-	Del	intronic	D	37335659	37335663	1	14	377.259	-	-	3	1	1	RNF8|CCDS4834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF8|CCDS4834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	6	1	9	1	26	12	26	12	9	1	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689805037	6	72427742	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	72427742	72427750	1	16	427.025	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	7	1	8	3	35	26	35	26	8	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689810706	6	92065212	TC	T	720	PASS	-	-	-	-	-	Del	-	D	92065212	92065215	1	33	645.956	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	10	2	11	3	39	26	39	26	11	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689811611	6	95175915	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	95175915	95175923	1	45	638.129	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	16	18	0	0	./.	8	4	8	5	39	28	39	28	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689812065	6	96898641	ACTT	A	358	PASS	-	-	-	-	-	Del	-	D	96898641	96898648	3	20	377.861	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	4	4	16	27	16	27	4	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689812670	6	99240473	CT	C	420	PASS	-	-	-	-	-	Del	-	D	99240473	99240479	1	8	377.861	-	-	5	1	1	-	-	./.	0	0	0	0	13	3	13	3	0	0	./.	7	0	9	3	24	20	24	20	9	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689812957	6	100138774	CAG	C	480	PASS	-	-	-	-	-	Del	-	D	100138774	100138780	2	25	430.035	-	-	2	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	4	6	6	29	25	29	25	6	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689813120	6	100690228	A	ATC	600	PASS	-	-	-	-	-	Ins	-	I	100690228	100690242	2	36	527.76	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	15	14	0	0	./.	5	5	5	6	34	30	34	30	5	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689814184	6	104109158	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	104109158	104109162	2	6	260.87	-	-	1	1	-	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	0	6	0	15	21	15	21	6	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689815151	6	107131256	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	107131256	107131266	1	20	368.83	-	-	9	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	3	4	5	7	29	21	29	21	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689818939	6	120658217	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	120658217	120658225	1	30	480.403	-	-	7	1	1	-	-	./.	0	0	0	0	7	23	7	23	0	0	./.	4	5	4	5	25	31	25	32	4	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689825350	6	144371872	A	AT	360	PASS	PLAGL1	CCDS5202.1	r.?	-	-	Ins	intronic	I	144371872	144371882	1	15	314.248	-	-	9	1	1	PLAGL1|CCDS5202.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PLAGL1|CCDS5202.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	5	4	27	19	27	19	5	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689827397	6	151590156	GT	G	420	PASS	AKAP12	CCDS5229.1	r.?	-	-	Del	intronic	D	151590156	151590159	1	20	377.259	-	-	2	1	1	AKAP12|CCDS5229.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKAP12|CCDS5229.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	4	4	4	24	28	24	28	4	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689830347	6	161141925	CT	C	418	PASS	PLG	CCDS5279.1	r.?	-	-	Del	intronic	D	161141925	161141935	1	25	431.841	-	-	9	1	1	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	4	6	5	37	22	37	22	6	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689834489	7	4563599	AG	A	269	PASS	-	-	-	-	-	Del	-	D	4563599	4563607	1	6	270.105	-	-	7	1	1	-	-	./.	0	0	0	0	10	2	10	2	0	0	./.	5	0	9	1	21	9	21	9	9	1	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689836460	7	10284699	GT	G	420	PASS	-	-	-	-	-	Del	-	D	10284699	10284708	1	20	377.545	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	4	5	5	25	30	25	30	5	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689838846	7	17851982	AAAG	A	507	PASS	SNX13	CCDS47551.1	r.?	-	-	Del	intronic	D	17851982	17851990	3	36	539.607	-	-	2	1	1	SNX13|CCDS47551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX13|CCDS47551.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	5	5	6	8	26	35	26	35	6	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689842424	7	29613073	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	29613073	29613089	2	12	268.901	-	-	7	1	-	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	2	4	27	33	27	33	2	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689847778	7	48572575	A	AT	720	PASS	ABCA13	CCDS47584.1	r.?	-	-	Ins	intronic	I	48572575	48572584	1	48	639.823	-	-	8	1	1	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	5	7	10	8	28	35	28	35	10	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689848035	7	49455170	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	49455170	49455179	1	10	267.094	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	13	0	0	./.	4	1	10	3	36	32	38	32	10	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689848911	7	52393630	AT	A	600	PASS	-	-	-	-	-	Del	-	D	52393630	52393637	1	32	540.21	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	7	3	8	5	26	28	26	28	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689850442	7	57316312	TG	T	360	PASS	-	-	-	-	-	Del	-	D	57316312	57316316	1	12	324.126	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	5	5	7	17	19	17	19	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689857349	7	79989842	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	79989842	79989860	2	10	270.105	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	1	4	1	4	24	36	24	36	1	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689857423	7	80250720	TG	T	540	PASS	CD36	CCDS34673.1	r.?	-	-	Del	intronic	D	80250720	80250722	1	28	486.189	-	-	1	1	1	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	3	6	3	9	32	29	32	29	3	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689857682	7	81268347	CCATAT	C	540	PASS	-	-	-	-	-	Del	-	D	81268347	81268356	5	28	486.189	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	6	6	8	32	37	32	37	6	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689858967	7	85055560	TA	T	840	PASS	-	-	-	-	-	Del	-	D	85055560	85055569	1	63	755.691	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	8	6	15	7	37	31	37	31	15	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689860209	7	89602491	CT	C	360	PASS	-	-	-	-	-	Del	-	D	89602491	89602495	1	12	322.922	-	-	3	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	1	5	1	7	13	27	13	27	1	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689862722	7	99278094	TC	T	960	PASS	CYP3A5	CCDS5672.1	r.?	-	-	Del	upstream	D	99278094	99278097	1	81	861.325	-	-	2	1	1	CYP3A5|CCDS5672.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CYP3A5|CCDS5672.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	14	18	14	0	0	./.	8	8	8	10	33	28	33	28	8	10	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689865526	7	109470441	AG	A	780	PASS	-	-	-	-	-	Del	-	D	109470441	109470444	1	50	700.466	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	9	6	9	29	27	29	27	6	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689868888	7	122176209	TG	T	780	PASS	CADPS2	CCDS47691.1	r.?	-	-	Del	intronic	D	122176209	122176211	1	56	702.272	-	-	1	1	1	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	6	7	9	7	33	34	33	34	9	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689870111	7	125844014	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	125844014	125844023	1	56	688.425	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	7	9	0	0	./.	7	6	9	6	38	32	38	32	9	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689885253	8	18991209	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	18991209	18991218	1	18	480.573	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	8	2	12	14	23	14	23	2	12	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689890010	8	38867483	A	AAACAAAC	350	PASS	ADAM9	CCDS6112.1	r.?	-	-	Ins	intronic	I	38867483	38867484	7	36	451.435	-	-	0	1	1	ADAM9|CCDS6112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM9|CCDS6112.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	5	3	8	0	0	./.	8	3	0	2	51	37	53	39	8	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689890451	8	39722041	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	39722041	39722044	1	48	641.567	-	-	2	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	7	5	10	8	67	92	67	92	10	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689906721	8	97789291	GT	G	600	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Del	intronic	D	97789291	97789301	1	32	540.659	-	-	9	1	1	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	7	3	8	4	37	49	37	49	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689908616	8	103629245	AAT	A	957	PASS	-	-	-	-	-	Del	-	D	103629245	103629250	2	77	861.443	-	-	2	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	6	10	9	16	26	31	26	31	9	16	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689910533	8	109595583	AG	A	480	PASS	-	-	-	-	-	Del	-	D	109595583	109595586	1	25	432.527	-	-	2	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	4	7	7	28	38	28	38	7	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689913267	8	118718151	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	118718151	118718158	1	56	695.03	-	-	6	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	6	7	10	8	48	45	49	46	10	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689914017	8	120962824	C	CT	660	PASS	DEPDC6	CCDS6331.1	r.?	-	-	Ins	intronic	I	120962824	120962829	1	12	586.898	-	-	4	1	-	DEPDC6|CCDS6331.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DEPDC6|CCDS6331.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	11	0	15	5	21	18	21	18	15	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689914552	8	122663980	TA	T	389	PASS	-	-	-	-	-	Del	-	D	122663980	122663989	1	20	376.655	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	7	4	29	33	29	33	7	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689919266	8	137849673	CT	C	540	PASS	-	-	-	-	-	Del	-	D	137849673	137849678	1	28	486.593	-	-	4	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	3	6	6	11	40	47	40	47	6	11	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689922544	9	2494312	A	AG	480	PASS	-	-	-	-	-	Ins	-	I	2494312	2494313	1	16	428.63	-	-	0	1	1	-	-	./.	0	0	0	0	12	5	13	5	0	0	./.	7	1	8	4	27	20	27	21	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689924112	9	7876551	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	7876551	7876561	1	42	588.764	-	-	9	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	6	5	8	8	38	37	39	38	8	8	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689928672	9	22450303	TACAA	T	480	PASS	DMRTA1	CCDS6514.1	r.?	-	-	Del	intronic	D	22450303	22450312	4	24	433.447	-	-	2	1	1	DMRTA1|CCDS6514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMRTA1|CCDS6514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	5	5	7	21	25	21	25	5	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689928762	9	22842483	CT	C	329	PASS	-	-	-	-	-	Del	-	D	22842483	22842491	1	16	325.085	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	3	4	5	24	33	24	33	4	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689931079	9	30771108	GATTGGTGCAAAAGTAATTGCAGTTTTTGCAATTACTTTTAATGACAAACACCGCAATTACTTTTGCACCAACCTACATATTGCATAAACTCAAACAAGGGAATGACCAGAGGGAGAGGAGCATGTTCACTACCAGTTCACTAGATATTCATTTTCTACCTCCTCATGTAGGCTAGCCTAGGTTAGCAATCAATACTTAATACTAGAATCTATGGTCATATCTCTCATCTACATTATATAAGTCAGCAAGCCTTCTTGAAGATGGGATAAGTGCCTTGTGATATATAAAAGTAACATGACACTAATGCTTTGGTATATTTAGAAAATATGTAATTAGCATAATGTGTCCAGGTTTATTTATATCTGCCTTTTCATTCCTGCTAATATTGATGTTAATGTGGCAGTTGCAAGCAGCTTTCAAATTCTTGGCAGTTCAATTCCACAGTACTTTAATTCATTATAGTAATTCATCTCTGTAAGGCAGAGAGGAAGGTTGAAAAGTATACTTAAGCTGTGGTTTCTTCTTTACAGATTTAGAGAGAGTGAAGAACCCCTAATACAAAACTAAAGAATGCATTATGGAATAACCTTTCTGAAATTGTATCATAGCTGTTTAACCATTGCCAGAACTAAA	G	261	PASS	-	-	-	-	-	Del	-	D	30771108	30771742	633	28	487.025	-	-	1	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	6	3	0	0	20	29	26	32	6	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689937358	9	71155930	C	CA	360	PASS	C9orf71	CCDS35040.1	r.?	-	-	Ins	upstream	I	71155930	71155937	1	15	320.87	-	-	6	1	1	C9orf71|CCDS35040.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	C9orf71|CCDS35040.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	4	3	17	16	17	16	4	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689938560	9	75590582	G	GT	300	PASS	ALDH1A1	ENST00000419959	r.?	-	-	Ins	intronic	I	75590582	75590592	1	10	266.088	-	-	9	1	1	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	1	4	1	4	22	20	22	20	1	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689939312	9	78674733	T	TA	689	PASS	PCSK5	CCDS6652.1	r.?	-	-	Ins	intronic	I	78674733	78674741	1	49	642.945	-	-	7	1	1	PCSK5|CCDS6652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCSK5|CCDS6652.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	6	6	9	9	28	22	28	22	9	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689943387	9	96274517	CTG	C	756	PASS	FAM120A	CCDS6706.1	r.?	-	-	Del	intronic	D	96274517	96274521	2	54	704.351	-	-	1	1	1	FAM120A|CCDS6706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM120A|CCDS6706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	5	8	7	9	13	26	13	26	7	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689944835	9	103757645	A	AT	567	PASS	-	-	-	-	-	Ins	-	I	103757645	103757654	1	42	577.927	-	-	8	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	5	6	6	18	17	18	17	6	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689950038	9	121508884	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	121508884	121508893	1	12	321.473	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	1	5	5	9	36	43	36	43	5	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689955944	X	5135715	CGA	C	420	PASS	-	-	-	-	-	Del	-	D	5135715	5135732	2	20	379.37	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	4	3	5	18	24	18	24	3	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689956494	X	6911555	AGAGGAAGTCCAGAGTCCTCTCAGACTCTGGGAAAGCCACACACATTATGTGACACACACTTCTTTATATTCAGATAGAGGCAATCTGACATGCACTTCATACATGGATTTGATAACAGGCCATTTTGAAAATGGGGAAAAATAGCCACATAGAATTATATACAATGATGTTAACTGTACTAATATTGTTAATCTTATAATATTGTTAAAAATAAATATGTTCAAATTTATGTTGCTGCTTCCACTCCAAGGACTACCACATTTTTGTATCAAAGGAGCAGAGCATAACACCATTTCTCTTACTGAGTCAATTGGACTGAGCTCACCCCACATGTGCTAGAGGAATCAATCTTCATGGAGTGGGATGTCCAGTAGGGCACGTGGATCTAAGGGAGAATATTGAAAGCCAATACAAAATCCATATGAAATTGTATGACAATTAAGACAGAACAAATTGGAATATTAGATTTCTTTTACATTTCAGAATTTTAACTGCTATTGAGTCCATCAGAAATAAACCTACAAAAATAATGTCTTCATATTGATGAGCTTTGTTACAGATATCTCCTGTTTCCAGACCAAAGCAATGGAAAACAATGAAGAAAAGGAAAAAATTAGGCCAGGCACAGTGGCCCATGTCAATAAACTCAGCGCTTTGGGAGGCTGAGGTGGGAGGACCACTTGAGGCCAGGTGCTTGACACCAGCCTGGGCAACACTGTGAGACCCTGTCTCCTCATAAAACAGAAAAAATAGCTGGGCATAGTGGCATGCATCTGTAGTCGCAGCTACTTGGGAGGCTGAGGTGGGAGGATTGCTTAAACCCAGGTGTTGGAGGCTATATGATTGCACTACTGCATTCCAGCCTGGGTGACAAAGCAAGATCCTGTTCCAAAATAAAATAAAATAAAAGTCTGTCTTTGAT	A	290	PASS	-	-	-	-	-	Del	-	D	6911555	6912482	922	32	540.753	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	7	3	0	0	20	24	27	27	7	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689959607	X	22642064	AC	A	540	PASS	-	-	-	-	-	Del	-	D	22642064	22642067	1	30	487.761	-	-	2	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	5	7	7	19	25	19	25	7	7	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689962704	X	35875634	GA	G	749	PASS	-	-	-	-	-	Del	-	D	35875634	35875636	1	50	704.544	-	-	1	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	9	4	10	5	29	19	29	19	10	5	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689962758	X	36373318	C	CA	300	PASS	CXorf30	ENST00000378653	r.?	-	-	Ins	intronic	I	36373318	36373328	1	6	267.366	-	-	9	1	1	CXorf30|ENST00000378653|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CXorf30|ENST00000378653|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	0	6	0	30	26	30	26	6	0	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689963848	X	42237278	AAC	A	660	PASS	-	-	-	-	-	Del	-	D	42237278	42237282	2	30	596.153	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	9	2	13	2	37	15	37	15	13	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689965998	X	53680951	A	AT	420	PASS	HUWE1	CCDS35301.1	r.?	-	-	Ins	intronic	I	53680951	53680959	1	18	371.543	-	-	7	1	1	HUWE1|CCDS35301.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HUWE1|CCDS35301.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	5	6	9	28	27	28	28	6	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689966918	X	62347987	AT	A	360	PASS	-	-	-	-	-	Del	-	D	62347987	62347995	1	15	325.174	-	-	7	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	4	2	5	3	30	26	30	26	5	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689967201	X	64980382	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	64980382	64980389	1	6	267.968	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	0	7	2	26	14	26	14	7	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689968152	X	69599683	ACT	A	509	PASS	KIF4A	CCDS14401.1	r.?	-	-	Del	intronic	D	69599683	69599688	2	28	462.475	-	-	2	1	1	KIF4A|CCDS14401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF4A|CCDS14401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	6	4	9	23	24	23	24	4	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689969817	X	78330919	C	CA	598	PASS	-	-	-	-	-	Ins	-	I	78330919	78330929	1	36	570.264	-	-	9	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	3	8	4	9	35	28	36	28	4	9	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689970686	X	82129886	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	82129886	82129896	1	12	266.764	-	-	9	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	2	3	2	3	40	28	40	28	2	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689974016	X	96205160	A	AT	360	PASS	DIAPH2	CCDS14467.1	r.?	-	-	Ins	intronic	I	96205160	96205167	1	15	321.562	-	-	6	1	1	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIAPH2|CCDS14467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	2	6	2	35	25	35	25	6	2	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689976646	X	110057791	CA	C	540	PASS	-	-	-	-	-	Del	-	D	110057791	110057798	1	30	485.353	-	-	6	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	4	5	7	6	27	24	27	24	7	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689977144	X	112830163	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	112830163	112830171	1	18	372.145	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	10	0	0	./.	5	2	8	4	38	32	39	32	8	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689977538	X	114535685	CT	C	420	PASS	LUZP4	CCDS14567.1	r.?	-	-	Del	intronic	D	114535685	114535690	1	18	379.37	-	-	4	1	1	LUZP4|CCDS14567.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LUZP4|CCDS14567.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	2	5	4	25	29	25	29	5	4	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689978864	X	120304227	CT	C	420	PASS	-	-	-	-	-	Del	-	D	120304227	120304235	1	18	379.37	-	-	7	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	2	5	3	6	23	24	23	24	3	6	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689978892	X	120387688	CT	C	420	PASS	-	-	-	-	-	Del	-	D	120387688	120387690	1	18	379.37	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	2	7	3	28	19	28	19	7	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689984215	X	145331088	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	145331088	145331096	1	36	587.724	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	8	3	11	3	35	22	36	22	11	3	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689985485	X	151186479	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	151186479	151186486	1	22	589.53	-	-	6	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	10	4	15	28	44	28	44	4	15	1	1	1	1	1	1	1	1
2627078	PD13633a	PD13633b	2689985998	X	153968396	GT	G	480	PASS	GAB3	CCDS48198.1	r.?	-	-	Del	intronic	D	153968396	153968405	1	21	432.964	-	-	8	1	1	GAB3|CCDS48198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAB3|CCDS48198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	2	6	4	9	25	30	25	30	4	9	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670132365	1	10714641	C	CA	420	PASS	CASZ1	CCDS41246.1	r.1990_1991insu	c.1672_1673insT	p.C558fs*2	Ins	frameshift	I	10714641	10714643	1	18	371.757	-	-	1	1	1	CASZ1|CCDS41246.1|r.1990_1991insu|c.1672_1673insT|p.C558fs*2|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	CASZ1|CCDS41246.1|r.1990_1991insu|c.1672_1673insT|p.C558fs*2|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	20	11	20	11	0	0	./.	5	2	6	2	26	24	26	24	6	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670158791	1	84754372	TG	T	300	PASS	-	-	-	-	-	Del	-	D	84754372	84754374	1	10	268.379	-	-	1	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	1	6	1	17	24	17	24	6	1	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670190503	1	192402753	CAT	C	540	PASS	-	-	-	-	-	Del	-	D	192402753	192402757	2	30	484.167	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	4	7	6	26	20	26	20	7	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670196523	1	208358093	TAC	T	360	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208358093	208358112	2	15	322.176	-	-	9	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	4	2	4	2	17	24	17	24	4	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670204909	1	231375466	TA	T	480	PASS	GNPAT	CCDS1592.1	r.?	-	-	Del	upstream	D	231375466	231375468	1	21	429.166	-	-	1	1	1	GNPAT|CCDS1592.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C1orf131|CCDS1591.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	2	6	2	7	15	29	15	29	2	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670207867	1	238500888	TTTTC	T	269	PASS	-	-	-	-	-	Del	-	D	238500888	238500896	4	10	266.573	-	-	1	1	-	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	1	4	2	4	24	31	24	31	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670208571	1	240217139	CG	C	329	PASS	FMN2	ENST00000447095	r.?	-	-	Del	intronic	D	240217139	240217141	1	16	322.778	-	-	1	1	1	FMN2|ENST00000447095|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FMN2|ENST00000447095|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	3	3	4	3	22	23	22	23	4	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670222141	10	24095485	G	GA	420	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Ins	intronic	I	24095485	24095494	1	14	370.136	-	-	8	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	6	2	7	15	20	15	20	2	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670232169	10	52601523	CT	C	300	PASS	A1CF	CCDS7243.1	r.?	-	-	Del	intronic	D	52601523	52601533	1	12	269.973	-	-	9	1	1	A1CF|CCDS7243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	A1CF|CCDS7243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	2	3	35	31	35	31	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670233512	10	55842713	AT	A	480	PASS	PCDH15	CCDS44404.1	r.?	-	-	Del	intronic	D	55842713	55842720	1	21	431.957	-	-	6	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	6	2	6	3	33	31	33	31	6	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670249317	10	101103649	G	GT	269	PASS	CNNM1	CCDS7478.2	r.?	-	-	Ins	intronic	I	101103649	101103659	1	12	248.299	-	-	9	1	1	CNNM1|CCDS7478.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNNM1|CCDS7478.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	3	14	19	14	19	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670252823	10	110950143	TG	T	480	PASS	-	-	-	-	-	Del	-	D	110950143	110950147	1	24	431.957	-	-	3	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	5	3	5	19	26	19	26	3	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670273897	11	32418594	GC	G	420	PASS	WT1	CCDS7878.2	r.?	-	-	Del	intronic	D	32418594	32418597	1	20	378.316	-	-	2	1	1	WT1|CCDS7878.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WT1|CCDS7878.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	4	5	18	22	18	22	4	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670275966	11	38179287	TG	T	540	PASS	-	-	-	-	-	Del	-	D	38179287	38179289	1	24	485.805	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	7	2	8	4	30	35	30	35	8	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670280725	11	50583344	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	50583344	50583352	1	10	267.216	-	-	7	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	1	4	2	6	34	33	34	33	2	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670289406	11	79663022	TC	T	540	PASS	-	-	-	-	-	Del	-	D	79663022	79663025	1	28	486.407	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	6	3	7	32	35	32	35	3	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670311789	12	7613920	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	7613920	7613922	1	10	267.272	-	-	1	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	1	4	1	4	16	24	16	24	1	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670333292	12	67413849	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	67413849	67413857	1	9	427.635	-	-	7	1	1	-	-	./.	0	0	0	0	20	26	21	27	0	0	./.	0	8	0	9	17	48	17	48	0	9	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670338246	12	82081607	TATTA	T	480	PASS	-	-	-	-	-	Del	-	D	82081607	82081616	4	24	432.451	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	3	6	5	22	21	22	21	6	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670338454	12	82680272	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	82680272	82680291	2	12	268.476	-	-	9	1	-	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	2	3	3	27	23	27	23	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670346167	12	104771815	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	104771815	104771824	1	16	320.726	-	-	8	1	-	-	-	./.	0	0	0	0	13	15	14	15	0	0	./.	3	3	4	4	29	18	29	18	4	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670347055	12	107368266	ATACTTC	A	290	PASS	C12orf23	CCDS9110.1	r.?	-	-	Del	downstream	D	107368266	107368274	6	36	540.564	-	-	1	1	1	C12orf23|CCDS9110.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C12orf23|CCDS9110.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	9	16	9	16	0	0	./.	5	5	6	5	32	25	32	25	6	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670355442	12	129073805	AC	A	420	PASS	TMEM132C	CCDS45009.1	r.?	-	-	Del	intronic	D	129073805	129073810	1	20	378.395	-	-	4	1	1	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	3	4	4	4	14	23	14	23	4	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670355455	12	129113352	TC	T	300	PASS	TMEM132C	CCDS45009.1	r.?	-	-	Del	intronic	D	129113352	129113355	1	12	270.282	-	-	2	1	1	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	3	3	15	17	15	17	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670364502	13	35160302	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	35160302	35160306	2	12	270.736	-	-	1	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	3	2	3	2	23	17	23	17	3	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670367478	13	42879656	G	GT	269	PASS	AKAP11	CCDS9383.1	r.?	-	-	Ins	intronic	I	42879656	42879666	1	12	267.123	-	-	9	1	1	AKAP11|CCDS9383.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AKAP11|CCDS9383.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	2	3	25	29	25	29	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670372054	13	55663151	TC	T	420	PASS	-	-	-	-	-	Del	-	D	55663151	55663154	1	14	379.03	-	-	2	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	1	6	1	6	15	33	15	33	1	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670374839	13	63066765	CA	C	329	PASS	-	-	-	-	-	Del	-	D	63066765	63066773	1	15	324.281	-	-	7	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	4	2	6	4	29	26	29	26	6	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670376198	13	66302180	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	66302180	66302190	1	12	267.725	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	18	0	0	./.	2	3	3	5	25	40	25	40	3	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670384444	13	88640198	GC	G	420	PASS	-	-	-	-	-	Del	-	D	88640198	88640203	1	20	379.03	-	-	4	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	3	4	3	5	20	41	20	41	3	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670390767	13	105183113	CACAG	C	540	PASS	-	-	-	-	-	Del	-	D	105183113	105183121	4	28	487.324	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	6	3	6	33	28	33	28	3	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670396598	14	24682220	TC	T	360	PASS	CHMP4A	CCDS9619.1	r.?	-	-	Del	intronic	D	24682220	24682222	1	15	325.358	-	-	1	1	1	CHMP4A|CCDS9619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHMP4A|CCDS9619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	4	2	7	3	25	25	25	25	7	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670397303	14	26872526	TC	T	300	PASS	-	-	-	-	-	Del	-	D	26872526	26872530	1	12	271.132	-	-	3	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	2	5	24	20	24	20	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670398233	14	29435663	GT	G	300	PASS	-	-	-	-	-	Del	-	D	29435663	29435668	1	12	271.132	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	4	22	19	22	19	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670402374	14	39867982	TAC	T	478	PASS	FBXO33	CCDS9677.1	r.2742_2743delGU	c.?	p.?	Del	3'UTR variant	D	39867982	39867986	2	30	483.822	-	-	1	1	1	FBXO33|CCDS9677.1|r.2742_2743delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FBXO33|CCDS9677.1|r.2742_2743delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	10	13	10	0	0	./.	5	4	5	7	31	29	31	29	5	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670402550	14	40474463	CT	C	360	PASS	-	-	-	-	-	Del	-	D	40474463	40474465	1	12	325.358	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	5	2	6	26	22	26	22	2	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670408844	14	57476299	TC	T	300	PASS	-	-	-	-	-	Del	-	D	57476299	57476302	1	10	271.132	-	-	2	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	4	1	6	19	24	19	24	1	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670410902	14	63246269	G	GT	480	PASS	KCNH5	CCDS9756.1	r.?	-	-	Ins	intronic	I	63246269	63246277	1	24	428.994	-	-	7	1	1	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	5	3	7	3	34	29	34	29	7	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670432357	15	33719841	GA	G	480	PASS	RYR3	CCDS45210.1	r.?	-	-	Del	intronic	D	33719841	33719844	1	24	429.91	-	-	2	1	1	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	3	6	3	29	28	29	28	6	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670437231	15	46530961	GA	G	360	PASS	-	-	-	-	-	Del	-	D	46530961	46530970	1	16	325.594	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	3	3	18	31	18	31	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670438454	15	50394465	C	CA	360	PASS	ATP8B4	CCDS32238.1	r.?	-	-	Ins	intronic	I	50394465	50394475	1	16	321.379	-	-	9	1	1	ATP8B4|CCDS32238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP8B4|CCDS32238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	17	0	0	./.	3	3	3	3	28	27	28	27	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670442653	15	60885421	T	TC	300	PASS	RORA	CCDS10177.1	r.?	-	-	Ins	intronic	I	60885421	60885429	1	12	268.318	-	-	7	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	3	2	5	2	31	27	31	28	5	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670444453	15	65283941	T	TA	300	PASS	SPG21	CCDS10198.1	r.?	-	-	Ins	upstream	I	65283941	65283951	1	12	267.114	-	-	9	1	1	SPG21|CCDS10198.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	SPG21|CCDS10198.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	24	22	25	22	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670452618	15	88648927	TAC	T	300	PASS	NTRK3	CCDS10340.1	r.?	-	-	Del	intronic	D	88648927	88648944	2	12	271.328	-	-	8	1	1	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	2	3	2	3	32	20	32	20	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670460954	16	7784501	CCTATTTTCATAATA	C	261	PASS	-	-	-	-	-	Del	-	D	7784501	7784517	14	30	488.397	-	-	1	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	5	4	5	26	26	26	26	4	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670462420	16	10907436	TA	T	300	PASS	FAM18A	CCDS45408.1	r.?	-	-	Del	intronic	D	10907436	10907440	1	10	271.332	-	-	3	1	-	FAM18A|CCDS45408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM18A|CCDS45408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	1	4	1	4	14	20	14	20	1	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670463514	16	13316668	TAC	T	300	PASS	SHISA9	CCDS45417.1	r.?	-	-	Del	intronic	D	13316668	13316672	2	10	269.526	-	-	1	1	-	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	18	4	18	0	0	./.	1	4	2	4	23	20	23	20	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670467139	16	23846526	GC	G	300	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	upstream	D	23846526	23846528	1	12	271.332	-	-	1	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	5	9	5	0	0	./.	3	2	3	2	18	19	18	19	3	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670473498	16	48994324	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	48994324	48994325	1	12	264.107	-	-	0	1	-	-	-	./.	0	0	0	0	12	18	13	18	0	0	./.	2	3	2	5	27	24	27	24	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670492947	17	13588729	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	13588729	13588738	1	10	268.447	-	-	8	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	1	4	2	20	17	20	18	4	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670530359	18	42067113	AG	A	300	PASS	AC110014.1	ENST00000511428	r.?	-	-	Del	intronic	D	42067113	42067115	1	12	270.099	-	-	1	1	1	AC110014.1|ENST00000511428|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110014.1|ENST00000511428|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	2	3	2	5	11	29	11	29	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670539667	18	67138821	G	GGT	356	PASS	DOK6	CCDS32841.1	r.?	-	-	Ins	intronic	I	67138821	67138822	2	9	404.583	-	-	0	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	0	8	0	3	23	28	23	28	0	11	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670563430	19	49116884	A	ACC	840	PASS	FAM83E	CCDS42587.1	r.?	-	-	Ins	upstream	I	49116884	49116888	2	63	739.801	-	-	3	1	1	FAM83E|CCDS42587.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	FAM83E|CCDS42587.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	7	5	7	5	0	0	./.	6	8	6	8	26	18	26	18	6	8	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670585356	2	48852896	A	AT	300	PASS	STON1-GTF2A1L	CCDS1840.1	r.?	-	-	Ins	intronic	I	48852896	48852903	1	10	265.988	-	-	6	1	1	STON1-GTF2A1L|CCDS1840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STON1-GTF2A1L|CCDS1840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	4	1	5	27	24	29	24	1	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670596419	2	82133835	TG	T	960	PASS	-	-	-	-	-	Del	-	D	82133835	82133837	1	65	857.785	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	12	5	13	29	33	29	33	5	13	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670596892	2	83955282	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	83955282	83955290	1	12	265.988	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	5	4	23	35	23	35	5	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670602332	2	102798245	T	TG	300	PASS	IL1R1	CCDS2055.1	r.?	-	-	Ins	downstream	I	102798245	102798255	1	6	261.172	-	-	9	1	1	IL1R1|CCDS2055.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	IL1R1|CCDS2055.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	7	16	7	0	0	./.	5	0	2	0	22	14	22	14	7	0	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670603591	2	106573050	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	106573050	106573053	1	16	319.186	-	-	2	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	3	3	4	5	22	25	22	25	4	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670603980	2	107673479	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	107673479	107673488	1	15	319.186	-	-	8	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	2	4	5	4	40	20	40	20	5	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670607555	2	119125203	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	119125203	119125211	1	15	319.186	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	2	4	24	33	24	33	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670614925	2	140556975	CTG	C	480	PASS	-	-	-	-	-	Del	-	D	140556975	140556980	2	25	429.193	-	-	2	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	4	6	5	22	32	22	32	6	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670631197	2	186775173	AC	A	350	PASS	-	-	-	-	-	Del	-	D	186775173	186775179	1	12	320.992	-	-	5	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	1	5	1	5	26	26	26	26	1	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670633492	2	193179347	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	193179347	193179354	1	12	262.978	-	-	6	1	1	-	-	./.	0	0	0	0	20	14	20	15	0	0	./.	2	3	3	6	21	25	23	25	3	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670635792	2	200011224	TACAA	T	538	PASS	-	-	-	-	-	Del	-	D	200011224	200011232	4	32	537.997	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	7	5	8	31	34	31	34	5	8	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670636620	2	202251194	CAG	C	360	PASS	TRAK2	CCDS2347.1	r.2137_2138delCU	c.1708_1709delCT	p.L570fs*16	Del	frameshift	D	202251194	202251199	2	15	322.798	-	-	2	1	1	TRAK2|CCDS2347.1|r.2137_2138delCU|c.1708_1709delCT|p.L570fs*16|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TRAK2|CCDS2347.1|r.2137_2138delCU|c.1708_1709delCT|p.L570fs*16|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	15	14	15	0	0	./.	2	4	2	4	20	28	20	28	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670659590	20	23915143	TC	T	300	PASS	-	-	-	-	-	Del	-	D	23915143	23915145	1	12	271.942	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	2	3	2	4	21	24	21	24	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670678130	21	16909362	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	16909362	16909369	1	28	483.892	-	-	6	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	6	3	6	5	32	47	32	47	6	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670685793	21	33580441	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	33580441	33580459	2	12	271.839	-	-	8	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	2	3	2	3	17	22	17	22	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670702885	22	43225158	AG	A	360	PASS	ARFGAP3	CCDS14042.1	r.?	-	-	Del	intronic	D	43225158	43225160	1	15	327.789	-	-	1	1	1	ARFGAP3|CCDS14042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARFGAP3|CCDS14042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	5	4	17	18	17	18	5	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670709954	3	10988576	AT	A	480	PASS	-	-	-	-	-	Del	-	D	10988576	10988586	1	16	431.157	-	-	9	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	1	7	1	8	25	26	25	26	1	8	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670714989	3	25503062	AC	A	300	PASS	RARB	CCDS2642.1	r.?	-	-	Del	intronic	D	25503062	25503068	1	12	269.473	-	-	5	1	1	RARB|CCDS2642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARB|CCDS2642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	13	25	13	0	0	./.	3	2	4	3	16	22	16	22	4	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670720970	3	43515930	CTA	C	300	PASS	ANO10	CCDS2710.2	r.?	-	-	Del	intronic	D	43515930	43515933	2	10	269.473	-	-	1	1	1	ANO10|CCDS2710.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO10|CCDS2710.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	5	2	24	28	24	28	5	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670729895	3	68791284	G	GA	480	PASS	FAM19A4	CCDS2907.1	r.?	-	-	Ins	intronic	I	68791284	68791290	1	24	426.341	-	-	5	1	1	FAM19A4|CCDS2907.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A4|CCDS2907.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	5	4	7	28	23	28	23	4	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670731762	3	73711616	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	73711616	73711625	1	10	266.463	-	-	8	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	4	1	4	3	39	33	39	33	4	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670747460	3	120303793	TA	T	360	PASS	-	-	-	-	-	Del	-	D	120303793	120303797	1	12	323.368	-	-	3	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	5	1	6	3	26	15	26	15	6	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670749966	3	128036522	CG	C	300	PASS	EEFSEC	CCDS33849.1	r.?	-	-	Del	intronic	D	128036522	128036526	1	10	269.473	-	-	3	1	1	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	4	2	5	18	24	18	24	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670763116	3	167136140	AC	A	360	PASS	-	-	-	-	-	Del	-	D	167136140	167136143	1	15	323.368	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	2	7	2	17	17	17	17	7	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670774956	4	2539723	CTATT	C	269	PASS	-	-	-	-	-	Del	-	D	2539723	2539731	4	6	269.313	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	6	2	24	15	24	15	6	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670783564	4	27416587	CT	C	360	PASS	-	-	-	-	-	Del	-	D	27416587	27416589	1	15	323.175	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	4	2	23	19	23	19	4	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670785798	4	33528635	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	33528635	33528643	1	12	266.302	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	2	3	30	25	30	25	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670793402	4	55676468	GT	G	300	PASS	-	-	-	-	-	Del	-	D	55676468	55676475	1	12	269.313	-	-	6	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	2	3	2	6	22	31	22	31	2	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670794538	4	58545784	CTG	C	480	PASS	-	-	-	-	-	Del	-	D	58545784	58545788	2	24	430.9	-	-	1	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	3	5	9	6	30	29	30	29	9	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670797151	4	65228731	T	TG	300	PASS	TECRL	CCDS33990.1	r.?	-	-	Ins	intronic	I	65228731	65228732	1	12	260.884	-	-	0	1	1	TECRL|CCDS33990.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TECRL|CCDS33990.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	2	3	2	28	31	28	31	3	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670802784	4	81493434	G	GT	360	PASS	C4orf22	CCDS3587.1	r.?	-	-	Ins	intronic	I	81493434	81493444	1	15	319.563	-	-	9	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	4	2	5	24	30	24	30	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670803491	4	83706753	TC	T	329	PASS	SCD5	CCDS34024.1	r.?	-	-	Del	intronic	D	83706753	83706755	1	15	317.155	-	-	1	1	1	SCD5|CCDS34024.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCD5|CCDS34024.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	2	4	2	6	23	23	23	23	2	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670815970	4	120534526	C	CT	300	PASS	PDE5A	CCDS3713.1	r.?	-	-	Ins	intronic	I	120534526	120534536	1	12	265.098	-	-	9	1	1	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	3	2	3	2	32	28	32	28	3	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670842307	4	190523130	TG	T	540	PASS	-	-	-	-	-	Del	-	D	190523130	190523135	1	30	484.763	-	-	4	1	1	-	-	./.	0	0	0	0	40	52	40	52	0	0	./.	5	4	5	4	87	87	87	87	5	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670851888	5	22855385	TA	T	360	PASS	CDH12	CCDS3890.1	r.?	-	-	Del	upstream	D	22855385	22855392	1	16	323.697	-	-	6	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CDH12|CCDS3890.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	4	3	24	32	24	32	4	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670853403	5	27100897	TA	T	300	PASS	CDH9	ENST00000513289	r.?	-	-	Del	intronic	D	27100897	27100906	1	10	269.146	-	-	8	1	1	CDH9|ENST00000513289|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDH9|ENST00000513289|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	1	4	2	19	19	19	19	4	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670854609	5	30022662	TA	T	300	PASS	-	-	-	-	-	Del	-	D	30022662	30022664	1	10	269.748	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	1	4	1	4	24	19	24	19	1	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670854838	5	30525026	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	30525026	30525033	2	12	269.748	-	-	3	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	3	5	5	30	29	30	29	5	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670860138	5	45579531	TA	T	480	PASS	HCN1	CCDS3952.1	r.?	-	-	Del	intronic	D	45579531	45579535	1	21	430.994	-	-	3	1	1	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	2	6	2	24	16	24	16	6	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670860439	5	49827601	T	TG	276	PASS	-	-	-	-	-	Ins	-	I	49827601	49827605	1	10	266.737	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	3	4	25	28	25	29	3	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670865490	5	64182024	C	CA	300	PASS	CWC27	CCDS3982.2	r.?	-	-	Ins	intronic	I	64182024	64182034	1	6	266.135	-	-	9	1	1	CWC27|CCDS3982.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CWC27|CCDS3982.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	7	17	0	0	./.	5	0	5	1	17	30	17	31	5	1	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670876316	5	97509200	TC	T	540	PASS	-	-	-	-	-	Del	-	D	97509200	97509206	1	28	485.546	-	-	5	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	6	3	8	3	23	29	23	29	8	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670876911	5	99206168	GAAAC	G	300	PASS	-	-	-	-	-	Del	-	D	99206168	99206192	4	12	267.942	-	-	5	1	-	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	3	4	26	26	26	26	3	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670877229	5	100326220	ATCTT	A	300	PASS	-	-	-	-	-	Del	-	D	100326220	100326234	4	12	269.748	-	-	3	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	3	2	3	2	26	24	26	24	3	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670891119	5	142637921	TTCTTTCTTC	T	420	PASS	-	-	-	-	-	Del	-	D	142637921	142637934	9	18	372.83	-	-	1	1	-	-	-	./.	0	0	0	0	7	3	9	3	0	0	./.	5	2	0	0	22	9	22	9	5	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670892577	5	147417413	CTCTG	C	389	PASS	-	-	-	-	-	Del	-	D	147417413	147417421	4	20	377.647	-	-	1	1	1	-	-	./.	0	0	0	0	27	10	27	10	0	0	./.	3	4	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670893087	5	148914674	C	CGCTTT	358	PASS	CSNK1A1	CCDS47303.1	r.?	-	-	Ins	intronic	I	148914674	148914680	5	18	356.575	-	-	1	1	1	CSNK1A1|CCDS47303.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSNK1A1|CCDS47303.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	15	0	0	./.	5	2	5	2	23	14	23	14	5	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670895688	5	156840763	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	156840763	156840773	1	10	266.737	-	-	9	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	1	4	1	5	25	24	25	24	1	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670903065	5	177731898	GCC	G	360	PASS	COL23A1	CCDS4436.1	r.?	-	-	Del	intronic	D	177731898	177731902	2	16	323.697	-	-	3	1	1	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	3	3	27	14	27	14	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670924869	6	53159830	ATTTCT	A	300	PASS	ELOVL5	CCDS4951.1	r.?	-	-	Del	intronic	D	53159830	53159839	5	10	269.733	-	-	1	1	1	ELOVL5|CCDS4951.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELOVL5|CCDS4951.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	1	4	3	5	28	21	28	21	3	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670925368	6	54463768	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	54463768	54463786	2	6	269.131	-	-	8	1	-	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	0	5	1	30	16	30	16	5	1	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670940493	6	97780183	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	97780183	97780184	1	10	261.304	-	-	0	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	6	1	29	23	29	23	6	1	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670942244	6	102972714	C	CTT	360	PASS	-	-	-	-	-	Ins	-	I	102972714	102972718	2	16	316.455	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	5	4	24	28	24	28	5	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670943802	6	107196051	CAATCCCCTTCATATGA	C	261	PASS	-	-	-	-	-	Del	-	D	107196051	107196070	16	30	485.519	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	5	4	5	23	24	23	24	4	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670948477	6	121213871	CA	C	300	PASS	-	-	-	-	-	Del	-	D	121213871	121213873	1	10	269.733	-	-	1	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	1	4	2	5	20	21	20	21	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670949319	6	123328112	GA	G	360	PASS	CLVS2	CCDS34525.1	r.?	-	-	Del	intronic	D	123328112	123328120	1	12	323.68	-	-	7	1	1	CLVS2|CCDS34525.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLVS2|CCDS34525.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	1	5	3	6	19	24	19	24	3	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670950622	6	127782306	T	TA	300	PASS	C6orf174	CCDS34531.1	r.?	-	-	Ins	intronic	I	127782306	127782314	1	10	266.723	-	-	7	1	1	C6orf174|CCDS34531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C6orf174|CCDS34531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	15	14	0	0	./.	1	4	2	7	15	22	15	22	2	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670950639	6	127851314	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	127851314	127851323	1	12	263.712	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	2	4	24	18	24	19	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670959764	6	154283439	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	154283439	154283446	1	12	266.723	-	-	6	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	3	4	29	25	29	25	3	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670964036	6	165818162	GA	G	509	PASS	PDE10A	CCDS5289.1	r.?	-	-	Del	intronic	D	165818162	165818171	1	28	484.315	-	-	8	1	1	PDE10A|CCDS5289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE10A|CCDS5289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	6	3	7	4	27	26	27	26	7	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670968395	7	6529053	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	6529053	6529056	1	12	266.887	-	-	2	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	2	3	2	5	9	25	9	26	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670969728	7	10005028	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	10005028	10005032	2	12	268.091	-	-	1	1	-	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	3	3	13	21	13	21	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670971993	7	15788678	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	15788678	15788688	1	10	266.284	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	2	5	19	32	19	33	2	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670976374	7	28344825	C	CT	660	PASS	CREB5	CCDS43562.1	r.?	-	-	Ins	intronic	I	28344825	28344834	1	40	586.548	-	-	8	1	1	CREB5|CCDS43562.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CREB5|CCDS43562.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	18	16	0	0	./.	7	4	10	5	32	28	32	28	10	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670977529	7	31637115	AC	A	420	PASS	CCDC129	CCDS5435.2	r.?	-	-	Del	intronic	D	31637115	31637120	1	18	377.856	-	-	4	1	1	CCDC129|CCDS5435.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC129|CCDS5435.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	5	2	5	2	28	23	28	23	5	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670985249	7	53591057	ATG	A	269	PASS	-	-	-	-	-	Del	-	D	53591057	53591077	2	10	269.897	-	-	9	1	-	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	1	5	1	39	21	39	21	5	1	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2670992385	7	71323657	AC	A	480	PASS	CALN1	CCDS47603.1	r.?	-	-	Del	intronic	D	71323657	71323659	1	24	431.835	-	-	1	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	3	6	4	17	26	17	26	6	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671010155	7	124102394	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	124102394	124102404	1	10	265.682	-	-	9	1	1	-	-	./.	0	0	0	0	19	26	19	26	0	0	./.	1	4	2	4	28	31	28	32	2	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671020495	7	151874522	AG	A	360	PASS	BAGE3	CCDS5931.1	r.8234delC	c.8015delC	p.S2672fs*6	Del	frameshift	D	151874522	151874524	1	15	322.672	-	-	1	1	1	BAGE3|CCDS5931.1|r.8234delC|c.8015delC|p.S2672fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	BAGE3|CCDS5931.1|r.8234delC|c.8015delC|p.S2672fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	16	9	16	0	0	./.	4	2	4	4	19	28	19	28	4	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671029847	8	16460490	TA	T	600	PASS	-	-	-	-	-	Del	-	D	16460490	16460493	1	32	538.016	-	-	2	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	7	3	10	3	35	20	35	20	10	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671041727	8	52778704	G	GA	480	PASS	PCMTD1	CCDS6148.1	r.?	-	-	Ins	intronic	I	52778704	52778713	1	24	427.523	-	-	8	1	1	PCMTD1|CCDS6148.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCMTD1|CCDS6148.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	3	5	4	7	34	40	34	40	4	7	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671044562	8	61656008	GT	G	420	PASS	CHD7	CCDS47865.1	r.?	-	-	Del	intronic	D	61656008	61656013	1	20	378.297	-	-	4	1	1	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD7|CCDS47865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	4	3	5	3	32	17	32	17	5	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671045546	8	65083605	TGAAA	T	300	PASS	-	-	-	-	-	Del	-	D	65083605	65083625	4	12	270.212	-	-	4	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	3	2	3	2	23	26	23	26	3	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671050667	8	80740572	TC	T	277	PASS	AC016240.1	ENST00000502766	r.?	-	-	Del	intronic	D	80740572	80740574	1	6	249.14	-	-	1	1	-	AC016240.1|ENST00000502766|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC016240.1|ENST00000502766|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	0	8	0	22	17	23	17	9	0	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671056936	8	99369603	GC	G	300	PASS	-	-	-	-	-	Del	-	D	99369603	99369605	1	12	270.212	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	3	5	21	19	21	19	3	5	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671058369	8	104086692	T	TA	360	PASS	ATP6V1C1	CCDS6296.1	r.?	-	-	Ins	downstream	I	104086692	104086694	1	15	320.642	-	-	1	1	1	ATP6V1C1|CCDS6296.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ATP6V1C1|CCDS6296.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	12	19	12	0	0	./.	2	4	6	4	22	26	22	26	6	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671067658	8	132096358	CT	C	300	PASS	-	-	-	-	-	Del	-	D	132096358	132096367	1	12	270.212	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	3	6	28	21	28	21	3	6	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671068092	8	133570537	CG	C	300	PASS	-	-	-	-	-	Del	-	D	133570537	133570542	1	6	269.008	-	-	4	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	5	0	6	2	25	14	25	14	6	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671069960	8	139328001	G	GA	300	PASS	FAM135B	CCDS6375.2	r.?	-	-	Ins	intronic	I	139328001	139328011	1	12	267.202	-	-	9	1	1	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	15	0	0	./.	2	3	2	3	33	18	33	31	2	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671083742	9	33701590	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	33701590	33701600	1	10	267.524	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	1	4	1	24	16	24	16	4	1	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671085465	9	37841617	CTG	C	300	PASS	DCAF10	CCDS6613.2	r.?	-	-	Del	intronic	D	37841617	37841623	2	12	270.535	-	-	2	1	1	DCAF10|CCDS6613.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF10|CCDS6613.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	2	3	4	4	25	19	25	19	4	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671115818	X	5088742	GA	G	300	PASS	-	-	-	-	-	Del	-	D	5088742	5088745	1	12	270.731	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	3	4	17	22	17	22	3	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671116998	X	8900965	CT	C	420	PASS	-	-	-	-	-	Del	-	D	8900965	8900974	1	20	379.023	-	-	8	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	3	4	3	4	32	22	32	22	3	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671118791	X	15085774	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	15085774	15085783	1	12	267.72	-	-	8	1	1	-	-	./.	0	0	0	0	18	22	19	23	0	0	./.	2	3	3	3	32	35	32	35	3	3	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671123095	X	30422483	TC	T	480	PASS	-	-	-	-	-	Del	-	D	30422483	30422487	1	24	433.169	-	-	3	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	3	6	4	16	30	16	30	6	4	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671123572	X	31860628	GA	G	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	31860628	31860636	1	15	324.877	-	-	7	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	6	2	23	15	23	15	6	2	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671129426	X	55293646	TG	T	540	PASS	PAGE3	CCDS35307.1	r.?	-	-	Del	upstream	D	55293646	55293651	1	24	486.713	-	-	4	1	1	PAGE3|CCDS35307.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PAGE3|CCDS35307.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	13	16	13	0	0	./.	2	7	3	9	22	24	22	24	3	9	1	1	1	1	1	1	1	1
2586348	PD13769a	PD13769b	2671142505	X	112674961	TTC	T	286	PASS	-	-	-	-	-	Del	-	D	112674961	112674967	2	10	270.731	-	-	2	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	1	5	1	30	17	30	17	5	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453605914	1	37256901	TG	T	360	PASS	GRIK3	CCDS416.1	r.?	-	-	Del	downstream	D	37256901	37256906	1	12	322.516	-	-	4	1	1	GRIK3|CCDS416.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GRIK3|CCDS416.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	4	8	4	0	0	./.	1	5	2	7	24	29	24	29	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453605917	1	37311317	GGACCTTGGACCTGAGGCCTTGGCTTCAACCAGTTA	G	261	PASS	GRIK3	CCDS416.1	r.?	-	-	Del	intronic	D	37311317	37311355	35	30	483.774	-	-	1	1	1	GRIK3|CCDS416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK3|CCDS416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	5	3	3	34	20	35	22	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453606057	1	37886476	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	37886476	37886485	1	12	263.947	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	3	9	20	9	20	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453607225	1	40813363	A	AT	300	PASS	SMAP2	ENST00000435168	r.?	-	-	Ins	intronic	I	40813363	40813371	1	12	265.753	-	-	7	1	1	SMAP2|ENST00000435168|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SMAP2|ENST00000435168|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	3	2	5	15	16	15	16	2	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453610088	1	48760316	ACTCCAT	A	261	PASS	SPATA6	CCDS551.1	r.?	-	-	Del	downstream	D	48760316	48760328	6	30	482.57	-	-	1	1	1	SPATA6|CCDS551.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SPATA6|CCDS551.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	4	5	6	5	27	27	27	27	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453610365	1	50074451	CT	C	480	PASS	AGBL4	CCDS44137.1	r.?	-	-	Del	intronic	D	50074451	50074453	1	21	425.205	-	-	1	1	1	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	6	2	9	16	31	16	31	2	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453612194	1	55737663	CTCAGATGGTA	C	348	PASS	-	-	-	-	-	Del	-	D	55737663	55737675	10	49	645.031	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	6	6	7	7	25	25	25	26	7	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453616532	1	68637149	G	GA	372	PASS	WLS	CCDS642.1	r.?	-	-	Ins	intronic	I	68637149	68637159	1	20	370.85	-	-	9	1	1	WLS|CCDS642.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WLS|CCDS642.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	18	7	19	0	0	./.	4	3	7	5	46	23	46	23	7	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453623152	1	88705555	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	88705555	88705565	1	21	424.602	-	-	9	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	6	2	7	37	22	37	23	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453639097	1	151709851	TCCCTC	T	329	PASS	-	-	-	-	-	Del	-	D	151709851	151709859	5	12	322.516	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	5	1	6	18	22	18	22	1	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453642509	1	161896756	G	GT	360	PASS	ATF6	CCDS1235.1	r.?	-	-	Ins	intronic	I	161896756	161896766	1	12	318.903	-	-	9	1	1	ATF6|CCDS1235.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATF6|CCDS1235.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	16	17	0	0	./.	5	1	8	4	41	32	41	32	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453645416	1	169582793	CA	C	1200	PASS	SELP	CCDS1282.1	r.?	-	-	Del	intronic	D	169582793	169582798	1	120	1073.25	-	-	4	1	1	SELP|CCDS1282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SELP|CCDS1282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	11	9	16	10	36	36	36	36	16	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453645460	1	169691267	GGT	G	300	PASS	SELE	CCDS1283.1	r.?	-	-	Del	downstream	D	169691267	169691287	2	10	268.763	-	-	9	1	-	SELE|CCDS1283.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SELE|CCDS1283.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	14	5	14	0	0	./.	1	4	2	4	39	30	39	30	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453645765	1	170421342	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	170421342	170421361	2	12	268.763	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	2	5	34	37	34	37	2	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453645929	1	170783586	T	TA	341	PASS	-	-	-	-	-	Ins	-	I	170783586	170783594	1	15	317.699	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	4	3	6	46	59	46	60	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453646813	1	172617908	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	172617908	172617918	1	15	318.903	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	4	2	69	44	70	44	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453649089	1	178272735	C	CA	780	PASS	RASAL2	CCDS1321.1	r.?	-	-	Ins	intronic	I	178272735	178272742	1	56	690.957	-	-	6	1	1	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	6	7	7	8	47	50	47	50	7	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453652842	1	184764098	CA	C	360	PASS	FAM129A	CCDS1364.1	r.2993delU	c.?	p.?	Del	3'UTR variant	D	184764098	184764102	1	15	322.516	-	-	3	1	1	FAM129A|CCDS1364.1|r.2993delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FAM129A|CCDS1364.1|r.2993delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	12	8	12	0	0	./.	2	4	2	4	49	47	49	47	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453655980	1	190609953	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	190609953	190609963	1	14	370.85	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	1	6	1	6	57	83	57	83	1	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453656675	1	191952673	GCTGCA	G	329	PASS	-	-	-	-	-	Del	-	D	191952673	191952679	5	15	321.914	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	2	4	60	49	60	49	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453659743	1	198090366	AGCAACCATTTGAATGAGTCACTCCACACCCAGGCCTCCCTG	A	261	PASS	-	-	-	-	-	Del	-	D	198090366	198090409	41	30	483.774	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	5	1	4	53	49	56	50	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453662984	1	204273682	G	GA	420	PASS	PLEKHA6	CCDS1444.1	r.?	-	-	Ins	intronic	I	204273682	204273688	1	20	372.054	-	-	5	1	1	PLEKHA6|CCDS1444.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PLEKHA6|CCDS1444.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	3	5	45	46	45	46	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453663487	1	205321504	TAC	T	300	PASS	KLHDC8A	CCDS30985.1	r.?	-	-	Del	intronic	D	205321504	205321522	2	12	268.161	-	-	8	1	-	KLHDC8A|CCDS30985.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KLHDC8A|CCDS30985.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	9	3	9	0	0	./.	3	2	3	2	29	33	29	33	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453664481	1	207776956	AT	A	660	PASS	CR1	CCDS44308.1	r.?	-	-	Del	intronic	D	207776956	207776961	1	42	591.279	-	-	4	1	1	CR1|CCDS44308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CR1|CCDS44308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	5	8	5	39	39	39	39	8	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453664846	1	208805464	GGTTAACAGTAATTCTTACATCACAGGGCCATTGA	G	290	PASS	-	-	-	-	-	Del	-	D	208805464	208805499	34	20	537.526	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	9	0	7	28	43	29	45	1	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453670652	1	222598349	G	GGTTAACT	464	PASS	-	-	-	-	-	Ins	-	I	222598349	222598352	7	80	792.611	-	-	0	1	1	-	-	./.	0	0	0	0	7	14	8	14	0	0	./.	9	7	8	6	39	30	41	32	9	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453670653	1	222598489	TGCACAGG	T	290	PASS	-	-	-	-	-	Del	-	D	222598489	222598500	7	35	536.322	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	6	4	6	5	26	23	26	23	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453671016	1	223595479	TAGT	TA	269	PASS	-	-	-	-	-	Complex	-	DI	223595480	223595482	3	10	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	1	4	0	0	26	39	26	39	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453672468	1	226464931	A	AC	360	PASS	LIN9	CCDS1553.1	r.?	-	-	Ins	intronic	I	226464931	226464932	1	15	315.893	-	-	0	1	-	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	8	9	0	0	./.	2	4	2	4	35	36	36	37	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453674718	1	231823970	ATG	A	300	PASS	DISC1	CCDS31056.1	r.?	-	-	Del	intronic	D	231823970	231823988	2	10	268.763	-	-	8	1	1	DISC1|CCDS31056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DISC1|CCDS31056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	1	4	1	4	22	37	22	37	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453677276	1	237058499	C	CA	300	PASS	MTR	CCDS1614.1	r.?	-	-	Ins	intronic	I	237058499	237058502	1	6	265.753	-	-	2	1	1	MTR|CCDS1614.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTR|CCDS1614.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	5	0	5	0	33	26	33	27	5	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453677883	1	238320054	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	238320054	238320061	1	10	265.753	-	-	6	1	1	-	-	./.	0	0	0	0	16	9	16	10	0	0	./.	4	1	5	2	54	22	55	22	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453678972	1	240752756	GA	G	360	PASS	GREM2	CCDS31070.1	r.?	-	-	Del	intronic	D	240752756	240752765	1	12	322.516	-	-	8	1	-	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	1	5	1	6	23	38	23	38	1	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453679341	1	241544884	C	CA	254	PASS	-	-	-	-	-	Ins	-	I	241544884	241544892	1	12	265.753	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	2	3	45	35	47	35	2	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453682461	1	247691422	GACTCATAATAATGTTATCATGTGTCTCTGACTCCTAGAGT	G	319	PASS	OR2C3	CCDS1634.2	r.?	-	-	Del	downstream	D	247691422	247691465	40	30	591.279	-	-	1	1	1	OR2C3|CCDS1634.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C1orf150|ENST00000366491|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	9	2	5	25	18	25	22	2	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453686848	10	8445160	AT	A	300	PASS	-	-	-	-	-	Del	-	D	8445160	8445170	1	12	270.083	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	3	6	17	32	17	32	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453697965	10	37142670	A	AC	540	PASS	-	-	-	-	-	Ins	-	I	37142670	37142671	1	28	480.731	-	-	0	1	1	-	-	./.	0	0	0	0	12	10	13	10	0	0	./.	3	6	4	7	24	20	25	21	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453700673	10	45207450	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	45207450	45207469	2	12	270.083	-	-	9	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	3	2	3	2	18	22	18	22	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453701945	10	51501305	AC	A	360	PASS	AL442003.3	ENST00000505015	r.?	-	-	Del	intronic	D	51501305	51501310	1	16	324.1	-	-	4	1	1	AL442003.3|ENST00000505015|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL442003.3|ENST00000505015|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	3	3	4	3	10	14	10	14	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453710457	10	74642978	G	GT	300	PASS	CCDC109A	CCDS7317.1	r.?	-	-	Ins	intronic	I	74642978	74642982	1	12	267.073	-	-	3	1	1	CCDC109A|CCDS7317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC109A|CCDS7317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	4	2	24	13	25	13	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453716512	10	93179030	G	GAA	360	PASS	HECTD2	CCDS7414.1	r.?	-	-	Ins	intronic	I	93179030	93179036	2	15	316.875	-	-	5	1	1	HECTD2|CCDS7414.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HECTD2|CCDS7414.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	2	4	2	6	34	35	34	35	2	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453717648	10	95661269	A	AT	360	PASS	TMEM20	CCDS44459.1	r.1181_1182insu	c.?	p.?	Ins	3'UTR variant	I	95661269	95661277	1	7	320.487	-	-	7	1	1	TMEM20|CCDS44459.1|r.1181_1182insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TMEM20|CCDS44459.1|r.1181_1182insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	10	13	10	0	0	./.	0	6	2	7	18	34	19	34	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453718032	10	97090286	GAAAT	G	300	PASS	SORBS1	CCDS31255.1	r.?	-	-	Del	intronic	D	97090286	97090292	4	6	270.083	-	-	1	1	1	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	5	0	5	0	30	21	30	21	5	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453720521	10	104034967	G	GT	389	PASS	GBF1	CCDS7533.1	r.?	-	-	Ins	intronic	I	104034967	104034974	1	20	372.698	-	-	6	1	1	GBF1|CCDS7533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GBF1|CCDS7533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	5	4	21	20	21	20	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453722952	10	111101803	AG	A	300	PASS	-	-	-	-	-	Del	-	D	111101803	111101805	1	12	270.083	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	3	2	4	3	17	22	17	22	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453722970	10	111188011	CA	C	420	PASS	-	-	-	-	-	Del	-	D	111188011	111188015	1	18	378.116	-	-	3	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	5	2	6	3	31	23	31	23	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453725781	10	119371196	AC	A	360	PASS	-	-	-	-	-	Del	-	D	119371196	119371204	1	16	315.069	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	5	3	19	19	19	19	5	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453725939	10	119856979	CA	C	420	PASS	-	-	-	-	-	Del	-	D	119856979	119856989	1	18	378.116	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	5	3	5	25	23	25	23	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453726771	10	121960861	CCTTCCA	C	319	PASS	-	-	-	-	-	Del	-	D	121960861	121960869	6	40	594.183	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	7	4	8	4	30	20	30	20	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453738460	11	20176453	GCCTGCACCT	G	348	PASS	DBX1	CCDS31443.1	r.?	-	-	Del	downstream	D	20176453	20176464	9	40	648.839	-	-	1	1	1	DBX1|CCDS31443.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DBX1|CCDS31443.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	7	14	7	0	0	./.	9	3	9	3	26	10	26	10	9	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453745429	11	39002789	AAATAGGAGAAAAGCTTCTTTAAATTGTTGAT	A	290	PASS	-	-	-	-	-	Del	-	D	39002789	39002822	31	36	541.201	-	-	1	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	5	5	5	5	29	24	29	24	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453748171	11	47161552	ACCAGCT	A	261	PASS	C11orf49	CCDS41641.1	r.?	-	-	Del	intronic	D	47161552	47161561	6	24	486.479	-	-	1	1	1	C11orf49|CCDS41641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf49|CCDS41641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	2	7	2	7	22	25	22	25	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453749034	11	49022100	GT	G	295	PASS	-	-	-	-	-	Del	-	D	49022100	49022104	1	16	324.721	-	-	3	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	3	5	5	20	29	20	29	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453749676	11	55284516	AT	A	327	PASS	-	-	-	-	-	Del	-	D	55284516	55284522	1	15	324.721	-	-	5	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	4	2	5	19	25	19	25	2	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453760997	11	88604131	TG	T	360	PASS	GRM5	CCDS44694.1	r.?	-	-	Del	intronic	D	88604131	88604134	1	12	324.721	-	-	2	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	5	1	6	3	33	18	33	18	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453765010	11	101019053	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	101019053	101019061	1	20	374.626	-	-	7	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	4	5	5	16	16	17	16	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453769413	11	115430863	TC	T	540	PASS	-	-	-	-	-	Del	-	D	115430863	115430866	1	18	487.081	-	-	2	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	8	1	9	3	24	23	24	23	9	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453772786	11	126599878	CT	C	300	PASS	-	-	-	-	-	Del	-	D	126599878	126599883	1	12	270.601	-	-	4	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	4	4	13	16	13	16	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453776338	12	3261097	C	CA	540	PASS	TSPAN9	CCDS8520.1	r.?	-	-	Ins	intronic	I	3261097	3261106	1	18	481.333	-	-	8	1	1	TSPAN9|CCDS8520.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TSPAN9|CCDS8520.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	1	8	4	10	31	29	31	29	4	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453781345	12	15272453	T	TA	300	PASS	RERG	CCDS8673.1	r.?	-	-	Ins	intronic	I	15272453	15272455	1	12	267.407	-	-	1	1	1	RERG|CCDS8673.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RERG|CCDS8673.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	4	2	27	24	28	24	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453781938	12	17341675	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	17341675	17341691	2	12	270.418	-	-	7	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	3	4	33	30	33	30	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453782562	12	19222817	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	19222817	19222826	1	12	267.407	-	-	8	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	3	6	23	27	23	27	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453783004	12	20052701	GT	G	540	PASS	-	-	-	-	-	Del	-	D	20052701	20052710	1	24	486.752	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	7	2	8	5	28	22	28	22	8	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453783541	12	21225539	TG	T	420	PASS	ENSG00000205754	CCDS44843.1	r.?	-	-	Del	intronic	D	21225539	21225543	1	20	377.38	-	-	3	1	1	ENSG00000205754|CCDS44843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000205754|CCDS44843.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	4	5	5	23	29	23	29	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453786215	12	28162237	GACA	GAT	420	PASS	-	-	-	-	-	Complex	-	DI	28162238	28162240	3	20	0	-	-	0	1	-	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	4	3	0	0	33	17	33	17	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453791241	12	45401926	ATCATGTGAGCCAATTCCCATAATAAATCTCCTC	A	261	PASS	-	-	-	-	-	Del	-	D	45401926	45401966	33	30	486.15	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	5	1	3	15	33	18	35	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453791492	12	46258102	GA	G	420	PASS	ARID2	CCDS31783.1	r.?	-	-	Del	intronic	D	46258102	46258110	1	18	377.38	-	-	7	1	1	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	5	3	5	14	20	14	20	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453792223	12	48465974	TA	T	480	PASS	SENP1	CCDS44868.1	r.?	-	-	Del	intronic	D	48465974	48465980	1	24	432.668	-	-	5	1	1	SENP1|CCDS44868.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SENP1|CCDS44868.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	3	5	3	29	14	29	14	5	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453795958	12	58027874	C	CCA	300	PASS	B4GALNT1	CCDS8950.1	r.?	-	-	Ins	upstream	I	58027874	58027876	2	6	263.795	-	-	0	1	1	B4GALNT1|CCDS8950.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	B4GALNT1|CCDS8950.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	3	7	3	7	0	0	./.	0	5	0	8	8	15	8	17	0	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453796550	12	60192295	ACTCAG	A	255	PASS	-	-	-	-	-	Del	-	D	60192295	60192304	5	16	324.501	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	3	4	19	20	19	20	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453798026	12	64823320	TCAAG	T	325	PASS	XPOT	CCDS31852.1	r.?	-	-	Del	intronic	D	64823320	64823327	4	24	432.668	-	-	1	1	1	XPOT|CCDS31852.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XPOT|CCDS31852.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	3	5	3	5	20	21	20	21	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453800533	12	71336265	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	71336265	71336274	1	12	267.407	-	-	8	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	3	4	30	25	30	25	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453801125	12	73188712	TATTCAG	TGAA	329	PASS	-	-	-	-	-	Complex	-	DI	73188713	73188718	6	16	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	0	0	23	26	23	26	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453801653	12	74801727	TG	T	420	PASS	-	-	-	-	-	Del	-	D	74801727	74801730	1	18	378.585	-	-	2	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	5	2	6	3	33	33	33	33	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453803857	12	80816246	TAAA	T	629	PASS	-	-	-	-	-	Del	-	D	80816246	80816250	3	42	594.919	-	-	3	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	5	7	6	25	30	25	30	7	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453804498	12	82712710	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	82712710	82712720	1	24	427.852	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	9	14	0	0	./.	5	3	5	6	30	29	30	31	6	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453804933	12	84059340	TAATTATGGATGACAAA	T	348	PASS	-	-	-	-	-	Del	-	D	84059340	84059360	16	48	647.196	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	7	5	10	19	35	19	35	5	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453805376	12	85208074	TGTGTCAGTTAGCAATCTAGCCCAGGG	T	290	PASS	-	-	-	-	-	Del	-	D	85208074	85208103	26	35	540.835	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	6	4	5	26	23	26	24	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453806410	12	88483808	G	GT	269	PASS	CEP290	ENST00000309041	r.?	-	-	Ins	intronic	I	88483808	88483818	1	10	265.601	-	-	9	1	1	CEP290|ENST00000309041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP290|ENST00000309041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	1	4	1	4	34	29	34	29	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453807497	12	91722958	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	91722958	91722960	1	10	267.407	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	4	1	4	24	35	25	35	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453812495	12	104947502	GT	G	540	PASS	CHST11	CCDS9099.1	r.?	-	-	Del	intronic	D	104947502	104947504	1	28	486.752	-	-	1	1	1	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	6	3	6	4	24	24	24	24	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453819747	12	124534735	GCCT	GA	418	PASS	-	-	-	-	-	Complex	-	DI	124534736	124534738	3	21	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	2	6	0	0	11	24	11	24	2	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453821618	12	129477356	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	129477356	129477357	1	12	267.407	-	-	0	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	2	3	2	14	29	14	29	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453825449	13	24310052	C	CA	300	PASS	MIPEP	CCDS9303.1	r.?	-	-	Ins	intronic	I	24310052	24310061	1	12	267.841	-	-	8	1	1	MIPEP|CCDS9303.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIPEP|CCDS9303.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	4	3	21	17	22	20	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453831410	13	39881901	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	39881901	39881908	1	24	383.391	-	-	6	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	5	3	8	4	30	24	30	24	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453832658	13	43226165	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	43226165	43226174	1	30	480.909	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	5	4	4	20	29	20	29	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453833448	13	45462946	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	45462946	45462955	1	42	586.239	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	6	5	9	12	21	27	21	27	9	12	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453835832	13	52525878	GCACAAGTAGTTC	G	290	PASS	ATP7B	CCDS41892.1	r.?	-	-	Del	intronic	D	52525878	52525895	12	27	541.702	-	-	1	1	1	ATP7B|CCDS41892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP7B|CCDS41892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	8	2	9	4	22	14	22	14	9	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453848273	13	87919753	A	AT	929	PASS	-	-	-	-	-	Ins	-	I	87919753	87919760	1	80	857.09	-	-	6	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	9	7	11	10	44	40	44	40	11	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453849035	13	89977991	T	TCTTAC	420	PASS	-	-	-	-	-	Ins	-	I	89977991	89978005	5	18	358.119	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	2	5	2	8	37	50	37	50	2	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453852462	13	98000486	A	AT	540	PASS	MBNL2	CCDS9484.1	r.?	-	-	Ins	intronic	I	98000486	98000495	1	28	482.113	-	-	8	1	1	MBNL2|CCDS9484.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBNL2|CCDS9484.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	3	6	3	6	34	39	34	39	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453853058	13	99248006	C	CA	569	PASS	-	-	-	-	-	Ins	-	I	99248006	99248011	1	35	535.681	-	-	4	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	6	6	6	27	42	27	42	6	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453853725	13	100538939	AATGTCGT	A	348	PASS	CLYBL	ENST00000376360	r.?	-	-	Del	intronic	D	100538939	100538949	7	48	650.042	-	-	1	1	1	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	7	5	11	6	31	23	31	23	11	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453854760	13	102969358	CT	C	300	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102969358	102969366	1	12	270.851	-	-	7	1	1	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	4	6	24	34	24	34	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453855362	13	104620904	GC	G	420	PASS	-	-	-	-	-	Del	-	D	104620904	104620908	1	20	379.191	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	3	5	3	34	32	34	32	5	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453856040	13	106382179	TTCTGCCCAATCAGAGGCTAACA	T	261	PASS	-	-	-	-	-	Del	-	D	106382179	106382208	22	30	487.532	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	5	2	5	23	24	25	24	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453856053	13	106430010	AAAATCTTG	A	307	PASS	-	-	-	-	-	Del	-	D	106430010	106430022	8	36	595.872	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	8	3	10	4	41	22	41	22	10	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453856310	13	107023199	TC	T	360	PASS	-	-	-	-	-	Del	-	D	107023199	107023202	1	16	325.021	-	-	2	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	3	3	4	23	31	23	31	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453856615	13	107726470	GCCTGTCTGTTTGCAAA	G	290	PASS	-	-	-	-	-	Del	-	D	107726470	107726489	16	35	541.1	-	-	1	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	6	4	6	4	22	27	22	27	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453856710	13	107942546	A	AG	329	PASS	FAM155A	CCDS32006.1	r.?	-	-	Ins	intronic	I	107942546	107942547	1	16	319.001	-	-	0	1	-	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	4	21	4	0	0	./.	3	3	0	0	25	36	28	36	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453859775	14	20452347	AGGGTGTTGTGTCAAAAGAGAACAC	A	276	PASS	-	-	-	-	-	Del	-	D	20452347	20452377	24	27	542.754	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	8	2	6	17	22	17	24	2	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453859805	14	20547942	AT	A	545	PASS	-	-	-	-	-	Del	-	D	20547942	20547947	1	32	542.152	-	-	4	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	7	3	10	3	32	24	32	24	10	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453861372	14	24355832	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	24355832	24355839	1	15	322.04	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	5	2	23	16	23	16	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453865547	14	36196887	AT	A	509	PASS	RALGAPA1	CCDS32065.1	r.?	-	-	Del	intronic	D	36196887	36196891	1	24	488.479	-	-	3	1	1	RALGAPA1|CCDS32065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGAPA1|CCDS32065.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	7	2	9	2	20	6	20	6	9	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453866041	14	37736705	A	AG	360	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Ins	intronic	I	37736705	37736706	1	15	320.234	-	-	0	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	4	3	4	22	18	22	19	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453870797	14	51338694	CTG	C	360	PASS	ABHD12B	CCDS45104.1	r.?	-	-	Del	upstream	D	51338694	51338711	2	15	325.652	-	-	8	1	1	ABHD12B|CCDS45104.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AL358334.1|ENST00000501589|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	2	5	2	28	16	28	16	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453876589	14	68843920	AC	A	298	PASS	RAD51L1	CCDS9789.1	r.?	-	-	Del	intronic	D	68843920	68843924	1	16	322.04	-	-	3	1	1	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAD51L1|CCDS9789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	6	4	21	20	21	20	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453882448	14	85221773	TTGCCTGC	T	261	PASS	-	-	-	-	-	Del	-	D	85221773	85221785	7	28	488.479	-	-	1	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	6	3	0	0	25	21	25	21	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453884003	14	89691179	T	TA	480	PASS	FOXN3	CCDS32138.1	r.?	-	-	Ins	intronic	I	89691179	89691185	1	21	429.387	-	-	5	1	1	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	2	6	2	8	24	29	24	29	2	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453887096	14	98180425	AACAAAAT	A	377	PASS	-	-	-	-	-	Del	-	D	98180425	98180439	7	50	703.172	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	4	9	5	10	17	24	18	24	6	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453893499	15	27844278	CTA	C	300	PASS	-	-	-	-	-	Del	-	D	27844278	27844282	2	12	271.135	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	3	4	18	26	18	26	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453896155	15	35374739	GTC	G	420	PASS	AC021231.2	ENST00000514460	r.?	-	-	Del	upstream	D	35374739	35374745	2	8	378.384	-	-	2	1	1	AC021231.2|ENST00000514460|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	AC021231.2|ENST00000514460|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	12	5	12	5	0	0	./.	7	0	7	2	23	14	23	14	7	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453900824	15	49184469	AC	A	300	PASS	SHC4	CCDS10130.1	r.?	-	-	Del	intronic	D	49184469	49184471	1	12	264.512	-	-	1	1	1	SHC4|CCDS10130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHC4|CCDS10130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	4	3	37	19	37	19	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453906573	15	62920764	CTA	C	329	PASS	-	-	-	-	-	Del	-	D	62920764	62920770	2	7	325.362	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	0	6	0	7	31	32	31	32	0	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453909803	15	69484580	ATG	A	360	PASS	GLCE	CCDS32277.1	r.?	-	-	Del	intronic	D	69484580	69484598	2	12	325.362	-	-	8	1	1	GLCE|CCDS32277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GLCE|CCDS32277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	1	5	1	5	35	31	35	31	1	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453911910	15	74892035	T	TTGCTGTCTCTTCCG	269	PASS	ARID3B	CCDS10264.1	r.?	-	-	Ins	downstream	I	74892035	74892041	14	30	412.183	-	-	0	1	1	ARID3B|CCDS10264.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ARID3B|CCDS10264.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	6	10	6	10	0	0	./.	4	5	0	0	23	31	26	34	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453911911	15	74892343	GC	G	269	PASS	ARID3B	CCDS10264.1	r.?	-	-	Del	downstream	D	74892343	74892346	1	12	269.93	-	-	2	1	1	ARID3B|CCDS10264.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ARID3B|CCDS10264.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	11	5	11	0	0	./.	2	3	3	5	25	32	25	32	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453912341	15	75973040	CAGA	C	269	PASS	CSPG4	CCDS10284.1	r.?	-	-	Del	intronic	D	75973040	75973046	3	6	271.135	-	-	1	1	1	CSPG4|CCDS10284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000203392|ENST00000435356|r.2370_2372delAGA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	14	8	14	0	0	./.	5	0	5	0	29	17	29	17	5	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453913031	15	77798386	A	AC	960	PASS	-	-	-	-	-	Ins	-	I	77798386	77798394	1	80	850.171	-	-	7	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	7	9	11	10	17	32	17	32	11	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453914111	15	80387124	TG	T	360	PASS	ZFAND6	CCDS10313.1	r.?	-	-	Del	intronic	D	80387124	80387126	1	12	321.147	-	-	1	1	1	ZFAND6|CCDS10313.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZFAND6|CCDS10313.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	1	6	2	30	20	30	20	6	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453921680	15	98628084	G	GTATATATATACATATATATACATATATATATACGTATATA	261	PASS	-	-	-	-	-	Ins	-	I	98628084	98628099	40	30	271.301	-	-	0	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	0	0	20	24	25	28	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453933293	16	20705240	AAAAGCAAAATTTATTC	A	319	PASS	ACSM1	CCDS10587.1	r.?	-	-	Del	upstream	D	20705240	20705261	16	40	596.344	-	-	1	1	1	ACSM1|CCDS10587.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ACSM1|CCDS10587.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	9	9	9	0	0	./.	4	7	4	7	56	36	56	36	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453933349	16	20810751	GA	G	360	PASS	ERI2	CCDS45436.1	r.?	-	-	Del	intronic	D	20810751	20810757	1	15	325.279	-	-	5	1	1	ERI2|CCDS45436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERI2|CCDS45436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	4	4	5	30	26	30	26	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453936956	16	28234134	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	28234134	28234144	1	12	268.055	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	4	3	24	23	24	23	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453938465	16	31929130	TTAG	T	300	PASS	ZNF267	CCDS32440.1	r.?	-	-	Del	downstream	D	31929130	31929136	3	6	271.066	-	-	1	1	1	ZNF267|CCDS32440.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF267|CCDS32440.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	16	17	16	0	0	./.	5	0	6	3	37	28	37	28	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453938468	16	31931989	TA	T	269	PASS	ZNF267	CCDS32440.1	r.?	-	-	Del	downstream	D	31931989	31931995	1	12	271.066	-	-	5	1	1	ZNF267|CCDS32440.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF267|CCDS32440.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	12	6	12	0	0	./.	2	3	3	4	12	26	12	26	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453940782	16	34607307	CA	C	660	PASS	ENSG00000237113	ENST00000425453	r.?	-	-	Del	intronic	D	34607307	34607312	1	42	596.344	-	-	4	1	1	ENSG00000237113|ENST00000425453|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237113|ENST00000425453|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	5	6	5	9	36	56	36	56	5	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453942317	16	49507475	ACTTGACCATCTTTCCAGGTGGGTC	A	377	PASS	-	-	-	-	-	Del	-	D	49507475	49507503	24	54	700.556	-	-	1	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	8	5	5	4	25	17	28	18	8	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453946824	16	62251894	AT	A	720	PASS	-	-	-	-	-	Del	-	D	62251894	62251904	1	45	650.557	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	8	6	11	21	17	21	17	6	11	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453947346	16	63792254	AACAAGTAAGTATGATACGTC	A	290	PASS	-	-	-	-	-	Del	-	D	63792254	63792278	20	11	542.131	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	10	0	7	0	29	24	31	24	10	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453950987	16	73935719	CT	C	269	PASS	-	-	-	-	-	Del	-	D	73935719	73935721	1	10	271.066	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	1	4	2	26	21	26	21	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453955363	16	85135139	TACAGATAACGCAA	T	290	PASS	FAM92B	CCDS32500.1	r.?	-	-	Del	intronic	D	85135139	85135157	13	27	541.529	-	-	1	1	1	FAM92B|CCDS32500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM92B|CCDS32500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	2	8	2	9	17	18	17	18	2	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453959087	17	4890969	CT	C	600	PASS	CAMTA2	CCDS11063.1	r.?	-	-	Del	upstream	D	4890969	4890971	1	35	541.697	-	-	1	1	1	CAMTA2|CCDS11063.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CAMTA2|CCDS11063.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	8	8	8	0	0	./.	6	4	6	8	11	20	11	20	6	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453962698	17	14456286	CT	C	360	PASS	-	-	-	-	-	Del	-	D	14456286	14456291	1	15	321.165	-	-	4	1	-	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	4	2	7	4	27	19	27	19	7	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453965930	17	21755859	G	GA	358	PASS	-	-	-	-	-	Ins	-	I	21755859	21755863	1	8	349.507	-	-	3	1	-	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	0	7	0	1	23	27	25	27	0	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453967382	17	27839229	ATGCC	A	300	PASS	TAOK1	CCDS32601.1	r.?	-	-	Del	intronic	D	27839229	27839236	4	10	270.548	-	-	1	1	1	TAOK1|CCDS32601.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAOK1|CCDS32601.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	1	4	1	4	13	25	13	25	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453968832	17	31550591	AATTAATTAGTGTACTTTGTGAAAAGAGTTCCAGCATGGCTTCAAAAAGGGAATCTGACTGGCGCATTTAAATATTTCCTTATATAATATTTGGTATCAAGCCAAAGAGCTTTGAGACAAAGGAGCCTAAAATGGAAGTGTTAAGGTCACCACCATTACGGCTCTCTTAGAAATGGGGTGGCAGTATTGCAGAGAAGACGGACAGTGCGAGTGAAGCGCAGCACCCCAAATCTTACTAGGAGCCTCCTCCATGCCGGATGCTTTGCTAGGACCTACATGGGGCCGGGATCACAGAGAGTAGAGACCTAGACTCTGTCTTAGAGGGACAGGGTTTGCTGGGAGAAGATAAGTCAAAGGGCAATGAAGTCCTGGTCACAGACACCAGATTTTTGCACATGACATTAGAAAGGACAGGGATCTGCAGGCACCTCCATTTGATTTCTTTTCAAGGATTTTACTAATAGACCAGCTTCTGGGAAAGGGCTCTCATTGTGGACTACATGAGGCTTGGACACGTTGTCTCAATATGGAAAACAACTTCAGATGCAAGCCAAGAACACAGGGTCAGGTGTTGTGCATGTAAGCTTGGCAAATCCTATCATAAAACCAATGGGGCTGTGTTAGAATTGGCGTTCTCTCTGTCTTGTGTTAATTATTATGCACTTGCTTTCTGGGCTTTGAATTATTCATGAGGCCAGATATAAAATACGATGATTATTGGTAATCTCCAGCTGTGGCACCTGAATGTGCAGAGACGCCACATCTGTTTCTGAAAACTATGGTCTGGGCTAAGGAACTTAGTGTGCTTTGGAGGAGCAGAAGGTGGCAGAGAGGGGAGGAGAGTGGTCAGAGGAGTGAGATCAAGAGGAGAAAGGTAAAGTGATGTTGCTCTCAGAGAAGGTGGAAGTGTGTCG	A	261	PASS	ACCN1	CCDS11276.1	r.?	-	-	Del	intronic	D	31550591	31551507	913	28	488.069	-	-	1	1	1	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	6	0	0	26	25	29	31	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453981072	17	61587016	AGGCCAACCGATG	A	261	PASS	-	-	-	-	-	Del	-	D	61587016	61587032	12	24	488.069	-	-	1	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	7	3	7	31	29	31	29	3	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453981818	17	63285829	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	63285829	63285839	1	10	236.832	-	-	9	1	-	-	-	./.	0	0	0	0	13	11	14	11	0	0	./.	1	4	2	6	60	47	61	47	2	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453982025	17	63832115	G	GT	569	PASS	CCDC46	CCDS32710.1	r.?	-	-	Ins	intronic	I	63832115	63832123	1	32	536.279	-	-	7	1	1	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	3	7	4	7	43	47	44	47	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453982672	17	64889969	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	64889969	64889979	1	12	268.139	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	17	0	0	./.	2	3	3	3	35	45	35	45	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453992562	18	3803192	A	AC	300	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Ins	intronic	I	3803192	3803200	1	12	267.293	-	-	7	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	3	2	17	14	18	14	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453994488	18	9412150	TA	T	720	PASS	-	-	-	-	-	Del	-	D	9412150	9412153	1	45	651.618	-	-	2	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	4	8	4	9	17	21	17	21	4	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453994766	18	9956964	T	TA	300	PASS	VAPA	CCDS11848.2	r.3761_3762insa	c.?	p.?	Ins	3'UTR variant	I	9956964	9956974	1	12	268.497	-	-	9	1	1	VAPA|CCDS11848.2|r.3761_3762insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	VAPA|CCDS11848.2|r.3761_3762insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	3	3	28	23	28	24	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453997220	18	18862236	TA	T	360	PASS	GREB1L	CCDS45836.1	r.?	-	-	Del	intronic	D	18862236	18862246	1	15	325.809	-	-	9	1	1	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	4	2	5	10	20	10	20	2	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2453998597	18	22866300	CCAAAATGGATAATTATTAAATGAA	C	290	PASS	ZNF521	CCDS32806.1	r.?	-	-	Del	intronic	D	22866300	22866327	24	36	543.015	-	-	1	1	1	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	5	5	4	5	22	26	23	26	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454000874	18	30025822	CA	C	389	PASS	FAM59A	CCDS11905.1	r.?	-	-	Del	intronic	D	30025822	30025832	1	20	380.111	-	-	9	1	1	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM59A|CCDS11905.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	3	5	4	21	23	21	23	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454001414	18	32332765	C	CA	720	PASS	DTNA	CCDS45848.1	r.?	-	-	Ins	intronic	I	32332765	32332774	1	48	643.791	-	-	8	1	1	DTNA|CCDS45848.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DTNA|CCDS45848.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	7	5	8	17	30	17	30	5	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454004091	18	41084800	GTTTGAGACTATCTTCTCCCATCCTGTAGA	G	319	PASS	-	-	-	-	-	Del	-	D	41084800	41084834	29	40	597.317	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	7	2	4	27	11	29	14	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454008979	18	55888773	A	AT	660	PASS	NEDD4L	CCDS45875.1	r.7_8insu	c.?	p.?	Ins	5'UTR variant	I	55888773	55888775	1	36	585.276	-	-	1	1	1	NEDD4L|CCDS45875.1|r.7_8insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	NEDD4L|CCDS45875.1|r.7_8insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	15	19	16	19	0	0	./.	3	8	4	9	23	28	23	29	4	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454010957	18	61476861	CCT	C	600	PASS	SERPINB7	CCDS11988.1	r.?	-	-	Del	downstream	D	61476861	61476868	2	27	543.015	-	-	3	1	1	SERPINB7|CCDS11988.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SERPINB7|CCDS11988.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	11	12	11	0	0	./.	8	2	9	4	24	23	24	23	9	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454013467	18	67754364	TA	T	300	PASS	RTTN	CCDS42443.1	r.?	-	-	Del	intronic	D	67754364	67754370	1	12	271.508	-	-	5	1	1	RTTN|CCDS42443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RTTN|CCDS42443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	4	4	23	24	23	24	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454016419	18	75951995	A	ACT	480	PASS	-	-	-	-	-	Ins	-	I	75951995	75952006	2	25	424.779	-	-	5	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	4	4	4	21	33	21	34	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454020312	19	7653476	GCGT	G	269	PASS	-	-	-	-	-	Del	-	D	7653476	7653481	3	12	271.717	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	3	4	31	23	31	23	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454021172	19	9279103	CTT	C	269	PASS	-	-	-	-	-	Del	-	D	9279103	9279108	2	12	262.084	-	-	4	1	1	-	-	./.	0	0	0	0	6	4	6	4	0	0	./.	2	3	2	7	7	13	8	13	3	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454025674	19	19431571	GCGGCAGATCTCGCGGAAGCCGCGAGGAGAGCC	G	377	PASS	KIAA0892	CCDS32969.2	r.?	-	-	Del	upstream	D	19431571	19431608	32	56	701.647	-	-	1	1	1	KIAA0892|CCDS32969.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KIAA0892|CCDS32969.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	3	12	3	0	0	./.	6	7	5	5	19	14	20	16	6	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454029992	19	32530792	A	AT	600	PASS	AC005547.1	ENST00000504888	r.?	-	-	Ins	intronic	I	32530792	32530794	1	32	537.412	-	-	1	1	1	AC005547.1|ENST00000504888|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC005547.1|ENST00000504888|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	7	3	9	5	29	30	29	30	9	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454032911	19	38845470	ACTTCGGGAC	A	261	PASS	CATSPERG	CCDS12514.2	r.1822_1830delCUUCGGGAC	c.1119_1127delCTTCGGGAC	p.F374_T376delFGT	Del	inframe	D	38845470	38845481	9	18	489.09	-	-	1	1	1	CATSPERG|CCDS12514.2|r.1822_1830delCUUCGGGAC|c.1119_1127delCTTCGGGAC|p.F374_T376delFGT|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	CATSPERG|CCDS12514.2|r.1822_1830delCUUCGGGAC|c.1119_1127delCTTCGGGAC|p.F374_T376delFGT|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	10	8	10	8	0	0	./.	8	1	10	1	21	20	21	20	10	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454034462	19	42969956	C	CTCTT	269	PASS	ENSG00000213904	ENST00000457234	r.?	-	-	Ins	intronic	I	42969956	42969970	4	10	256.665	-	-	3	1	1	ENSG00000213904|ENST00000457234|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	ENSG00000213904|ENST00000457234|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	4	1	4	1	23	20	23	20	4	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454034463	19	42971095	GT	G	600	PASS	ENSG00000213904	ENST00000457234	r.?	-	-	Del	intronic	D	42971095	42971100	1	35	541.025	-	-	4	1	1	ENSG00000213904|ENST00000457234|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ENSG00000213904|ENST00000457234|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	4	10	5	22	25	22	25	10	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454036583	19	47887225	T	TA	360	PASS	DHX34	CCDS12700.1	r.?	-	-	Ins	downstream	I	47887225	47887232	1	15	322.448	-	-	6	1	1	DHX34|CCDS12700.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DHX34|CCDS12700.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	4	4	18	18	18	18	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454042273	2	859473	GC	G	329	PASS	-	-	-	-	-	Del	-	D	859473	859479	1	7	298.387	-	-	5	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	0	6	3	9	13	15	13	15	3	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454043674	2	5569639	G	GGT	269	PASS	-	-	-	-	-	Ins	-	I	5569639	5569640	2	6	260.797	-	-	0	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	0	5	2	0	30	24	30	24	2	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454044522	2	8318159	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	8318159	8318168	1	12	266.216	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	4	3	27	18	27	20	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454048001	2	18600832	CA	C	720	PASS	-	-	-	-	-	Del	-	D	18600832	18600838	1	49	643.133	-	-	5	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	6	6	9	22	30	22	30	6	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454052134	2	30858885	AATGAGGTTATCAGTGTACGTGCTTTAAGCATTCACAGGGGGCAAGGCCACTTTGGGCCTTGGTACTTGAACAAGCTTCTTCTTAGAACCCTTGGC	A	290	PASS	LCLAT1	CCDS1772.1	r.?	-	-	Del	intronic	D	30858885	30858983	95	35	537.85	-	-	1	1	1	LCLAT1|CCDS1772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LCLAT1|CCDS1772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	6	4	0	0	21	10	27	14	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454056463	2	42368771	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	42368771	42368781	1	12	318.255	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	1	5	3	6	25	28	25	28	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454064291	2	65942298	AT	A	540	PASS	-	-	-	-	-	Del	-	D	65942298	65942303	1	28	484.607	-	-	4	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	3	6	3	26	17	26	17	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454065147	2	68444115	T	TA	600	PASS	PPP3R1	CCDS46310.1	r.?	-	-	Ins	intronic	I	68444115	68444118	1	35	532.432	-	-	2	1	1	PPP3R1|CCDS46310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP3R1|CCDS46310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	6	5	8	12	19	12	19	5	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454067268	2	75099696	T	TG	300	PASS	HK2	CCDS1956.1	r.?	-	-	Ins	intronic	I	75099696	75099704	1	12	266.216	-	-	7	1	1	HK2|CCDS1956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HK2|CCDS1956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	4	2	15	18	15	18	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454068935	2	80200208	GT	G	360	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80200208	80200218	1	15	314.643	-	-	9	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	4	4	5	30	24	30	24	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454069732	2	82496830	CTTCTCAGTGTAAATGATTTTTTCCAGGGCCA	C	261	PASS	-	-	-	-	-	Del	-	D	82496830	82496862	31	28	484.607	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	6	3	5	1	17	18	18	20	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454071910	2	89247379	AACATGCAAATGAGCAGGGGA	AAC	348	PASS	-	-	-	-	-	Complex	-	DI	89247380	89247399	20	33	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	10	2	0	0	29	11	30	12	10	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454072118	2	90229764	GA	G	300	PASS	-	-	-	-	-	Del	-	D	90229764	90229766	1	12	269.226	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	4	2	23	23	23	23	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454074302	2	98854003	TAAATGTGG	T	348	PASS	VWA3B	CCDS42718.1	r.?	-	-	Del	intronic	D	98854003	98854013	8	49	645.541	-	-	1	1	1	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	6	6	6	7	16	23	16	23	6	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454075576	2	102578025	ACGGAG	A	269	PASS	AC005035.2	ENST00000508786	r.?	-	-	Del	upstream	D	102578025	102578032	5	6	269.226	-	-	1	1	1	AC005035.2|ENST00000508786|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	AC005035.2|ENST00000508786|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	11	3	11	3	0	0	./.	5	0	5	0	29	12	29	12	5	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454075936	2	103877559	CT	C	600	PASS	-	-	-	-	-	Del	-	D	103877559	103877568	1	32	538.452	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	7	3	10	5	30	24	30	24	10	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454088093	2	140507058	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	140507058	140507067	1	12	266.216	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	5	5	22	33	22	33	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454088481	2	141501888	CA	C	420	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141501888	141501894	1	14	376.917	-	-	5	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	6	1	6	1	36	18	36	18	6	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454088719	2	141897076	G	GA	389	PASS	LRP1B	CCDS2182.1	r.?	-	-	Ins	intronic	I	141897076	141897086	1	20	372.702	-	-	9	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	4	3	4	4	26	31	26	31	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454090563	2	148124182	A	ATT	360	PASS	-	-	-	-	-	Ins	-	I	148124182	148124192	2	15	315.847	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	11	15	0	0	./.	2	4	3	5	22	23	22	24	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454098372	2	172746793	AT	A	269	PASS	SLC25A12	CCDS33327.1	r.?	-	-	Del	intronic	D	172746793	172746799	1	10	269.226	-	-	5	1	1	SLC25A12|CCDS33327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A12|CCDS33327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	1	4	1	4	28	33	28	33	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454099676	2	176750225	CT	C	360	PASS	-	-	-	-	-	Del	-	D	176750225	176750233	1	12	323.071	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	1	6	1	24	14	24	14	6	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454102639	2	185683934	T	TA	300	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Ins	intronic	I	185683934	185683944	1	10	266.216	-	-	9	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	4	1	4	1	34	25	35	25	4	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454105453	2	193684867	CA	C	484	PASS	-	-	-	-	-	Del	-	D	193684867	193684873	1	20	538.452	-	-	5	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	1	9	3	11	19	32	19	32	3	11	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454105845	2	195158515	TTGTTCTAGAGCACGGTCCCAG	T	319	PASS	-	-	-	-	-	Del	-	D	195158515	195158540	21	40	592.298	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	7	3	7	24	28	25	28	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454107561	2	200730724	CA	C	300	PASS	-	-	-	-	-	Del	-	D	200730724	200730730	1	6	269.226	-	-	5	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	5	0	6	0	23	24	23	24	6	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454109650	2	206732526	AT	A	360	PASS	-	-	-	-	-	Del	-	D	206732526	206732532	1	7	323.071	-	-	5	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	0	6	1	6	19	21	19	21	1	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454109745	2	206915499	TG	T	291	PASS	INO80D	CCDS46500.1	r.?	-	-	Del	intronic	D	206915499	206915502	1	10	268.624	-	-	2	1	1	INO80D|CCDS46500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INO80D|CCDS46500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	1	4	2	7	15	21	15	21	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454109758	2	206950319	C	CT	420	PASS	INO80D	CCDS46500.1	r.?	-	-	Ins	intronic	I	206950319	206950321	1	18	370.896	-	-	1	1	1	INO80D|CCDS46500.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	INO80D|CCDS46500.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	5	2	11	7	23	20	24	20	11	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454116311	2	225398173	C	CA	420	PASS	CUL3	CCDS2462.1	r.?	-	-	Ins	intronic	I	225398173	225398183	1	14	369.09	-	-	9	1	-	CUL3|CCDS2462.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CUL3|CCDS2462.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	1	6	3	6	21	24	21	24	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454117878	2	229425504	AAGAGATTAA	AC	261	PASS	-	-	-	-	-	Complex	-	DI	229425505	229425513	9	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	6	0	0	18	24	18	24	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454119166	2	233011058	TCTTTTTAAATAGTTTGTAGTAGGATG	T	261	PASS	DIS3L2	CCDS42834.1	r.?	-	-	Del	intronic	D	233011058	233011090	26	28	484.607	-	-	1	1	1	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	6	3	4	2	25	21	27	22	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454119168	2	233012081	GT	G	480	PASS	DIS3L2	CCDS42834.1	r.?	-	-	Del	intronic	D	233012081	233012089	1	21	429.558	-	-	7	1	1	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	6	2	10	3	26	15	26	15	10	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454121526	2	240191606	CTTTGTTAATTGCACATTA	CGGGCT	261	PASS	HDAC4	CCDS2529.1	r.?	-	-	Complex	intronic	DI	240191607	240191624	18	24	0	-	-	0	1	1	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	2	7	0	0	18	14	18	15	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454124658	20	6243862	TA	T	300	PASS	-	-	-	-	-	Del	-	D	6243862	6243871	1	6	271.956	-	-	8	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	5	0	6	1	16	14	16	14	6	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454126688	20	12420317	CAA	C	360	PASS	-	-	-	-	-	Del	-	D	12420317	12420321	2	16	326.348	-	-	3	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	3	4	3	12	12	12	12	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454129567	20	21121678	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	21121678	21121686	1	15	322.735	-	-	7	1	1	-	-	./.	0	0	0	0	16	6	17	6	0	0	./.	4	2	4	5	20	18	20	18	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454129824	20	22119072	GAA	G	360	PASS	-	-	-	-	-	Del	-	D	22119072	22119080	2	16	326.348	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	4	4	22	20	22	20	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454136851	20	40860252	ATCTTGACTG	A	348	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	40860252	40860264	9	45	650.889	-	-	1	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	8	4	9	6	20	21	20	21	9	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454137954	20	43935846	AT	A	480	PASS	MATN4	CCDS13348.1	r.?	-	-	Del	intronic	D	43935846	43935852	1	24	432.12	-	-	5	1	1	MATN4|CCDS13348.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MATN4|CCDS13348.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	5	4	6	21	27	21	27	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454143817	20	58370177	ATTG	A	509	PASS	PHACTR3	CCDS13480.1	r.?	-	-	Del	intronic	D	58370177	58370187	3	30	489.522	-	-	3	1	1	PHACTR3|CCDS13480.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR3|CCDS13480.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	4	5	6	7	29	34	29	34	6	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454143965	20	59062334	AAGAG	A	385	PASS	-	-	-	-	-	Del	-	D	59062334	59062339	4	28	488.317	-	-	2	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	6	3	8	4	28	24	28	24	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454157545	21	36077029	AT	A	720	PASS	CLIC6	CCDS13638.1	r.?	-	-	Del	intronic	D	36077029	36077033	1	45	653.384	-	-	3	1	1	CLIC6|CCDS13638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIC6|CCDS13638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	8	8	9	24	28	24	28	8	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454162892	22	17916543	ATACG	A	418	PASS	CECR2	ENST00000400585	r.?	-	-	Del	intronic	D	17916543	17916551	4	25	437.231	-	-	1	1	1	CECR2|ENST00000400585|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CECR2|ENST00000400585|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	4	5	4	23	16	23	16	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454165822	22	25708730	G	GGA	269	PASS	-	-	-	-	-	Ins	-	I	25708730	25708744	2	12	267.249	-	-	6	1	1	-	-	./.	0	0	0	0	7	6	8	6	0	0	./.	2	3	2	4	21	21	21	21	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454171931	22	41048060	GCTTGGCAGGGCTGGAGGGGAGGAGACCCA	G	305	PASS	Z98048.1	ENST00000499213	r.?	-	-	Del	intronic	D	41048060	41048091	29	36	596.377	-	-	1	1	1	Z98048.1|ENST00000499213|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	Z98048.1|ENST00000499213|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	3	8	2	4	14	15	15	19	3	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454174057	22	46228442	AAACGCCCCAAGGGCAGGGACTGGACTATCCTGTTAGCTGTTGTCTTACCAGTATTGAGCATTTTGCCTTCGTATTTATTAAATGAATGAATAGATCATGATTAAATTTTTGAGAGACATTCAGATGTAAGATTAACAGTTTGAATTTTTGTTCATATCTAAATCCCTTGCTCCAACGCCAGTCTAAATATCAAGAGGTGTGTTGTTCATAGAAAAGAGGAAAACAGTGTTAAAGTATTAAGTTTCTGTAATTCAATGAATTTTCTCCCCAAAATGAAATATTCAGTACTTCAGAAATTTTTTAGAGAGATACGCGTCAAGGGAGAGTTTTAGAACTAAGTGTCACCAGCATGACCACTTGGCTTTTAAATAGTCTAAAGTGTTATAGTGAATGTTGGAGTTATTTATGTATTATACCTTTCTGCTGAAGGTTGTCCTGACTTTAAATGGATATAGTAGTGCTCTTCCCCTGATGAGGACAAATTAGAATTAGAGATCTCCTTGTTGAAAGAAATCAATCAGACTGCAGGTAACTCTTGAGTCACCTATTACTGTTAGAAGTGAAAGCAGACAGCATGAAATGAGAACCTCTCTCCTGTGCTGACTTTGCAGCATCATAGAGTCCTTGGGAAGCGCACGCATCTGGTATCTGTCCCTGTTCACCCTGCAAGCCCTCCCCACCCTTGACCACCGACTTCCTGGGAGCTGCTGAAGGCGTCGGGGGAGGTGGGGTGAGGAGGCAGGTCAGGATGGCCATGGTAACTAATGCCATTGGAGCAAGTGCTACCAGATGCCCAGACACTGGTGTGTACAGCATAAGAGCGCTCCTTGACTCCTCAGGGCCTGCTGGGTCTTGTCTGTTCTAAATCGCCAGAAGCTCCACC	A	290	PASS	ATXN10	CCDS14070.1	r.?	-	-	Del	intronic	D	46228442	46229326	883	27	543.529	-	-	1	1	1	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	2	8	0	0	16	10	18	18	2	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454175254	22	49548226	G	GA	389	PASS	-	-	-	-	-	Ins	-	I	49548226	49548227	1	14	377.761	-	-	0	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	1	6	0	0	21	16	21	16	1	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454182269	3	18000691	A	AT	420	PASS	AC139618.1	ENST00000448265	r.?	-	-	Ins	upstream	I	18000691	18000698	1	20	373.423	-	-	6	1	1	AC139618.1|ENST00000448265|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	AC139618.1|ENST00000448265|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	5	4	20	24	20	24	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454182983	3	20295854	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	20295854	20295863	1	15	320.077	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	4	4	22	16	22	16	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454190503	3	45259912	TG	T	360	PASS	-	-	-	-	-	Del	-	D	45259912	45259919	1	15	323.689	-	-	6	1	1	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	4	2	4	3	16	20	16	20	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454195800	3	63369237	CA	C	480	PASS	SYNPR	CCDS46859.1	r.?	-	-	Del	intronic	D	63369237	63369244	1	25	430.984	-	-	6	1	1	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	4	4	6	5	16	19	16	19	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454199209	3	75283013	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	75283013	75283021	1	30	480.116	-	-	7	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	5	4	6	5	22	16	23	16	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454202315	3	81504056	CA	C	360	PASS	-	-	-	-	-	Del	-	D	81504056	81504062	1	12	323.689	-	-	5	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	5	1	5	2	22	17	22	17	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454205417	3	94623970	AT	A	300	PASS	-	-	-	-	-	Del	-	D	94623970	94623974	1	12	269.741	-	-	3	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	3	3	22	27	22	27	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454205786	3	95697181	AC	A	420	PASS	-	-	-	-	-	Del	-	D	95697181	95697187	1	20	377.638	-	-	5	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	4	5	5	29	27	29	27	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454206402	3	97851279	ATGT	A	392	PASS	OR5H1	CCDS33797.1	r.?	-	-	Del	upstream	D	97851279	97851286	3	24	485.534	-	-	2	1	1	OR5H1|CCDS33797.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	OR5H1|CCDS33797.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	6	8	6	0	0	./.	2	7	2	7	20	24	20	24	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454208398	3	103961931	CTGAGCTGTACAGAGAGTACACTCAACAG	C	261	PASS	-	-	-	-	-	Del	-	D	103961931	103961964	28	28	484.932	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	3	3	3	17	21	20	21	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454210896	3	111206108	GA	G	360	PASS	-	-	-	-	-	Del	-	D	111206108	111206113	1	12	323.087	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	1	7	2	22	8	22	8	7	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454215519	3	125168721	GGAAAAACAAAAAA	G	290	PASS	SNX4	CCDS3032.1	r.?	-	-	Del	intronic	D	125168721	125168735	13	35	539.482	-	-	1	1	1	SNX4|CCDS3032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX4|CCDS3032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	6	6	6	20	23	20	23	6	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454217087	3	130514363	TGTTGA	T	538	PASS	-	-	-	-	-	Del	-	D	130514363	130514372	5	36	539.482	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	5	8	5	22	20	22	20	8	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454218463	3	134707258	A	AT	480	PASS	EPHB1	CCDS46921.1	r.?	-	-	Ins	intronic	I	134707258	134707267	1	21	426.167	-	-	8	1	1	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	6	2	6	8	29	31	29	32	6	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454220559	3	141547332	ACCCACCCTAATGAC	A	261	PASS	-	-	-	-	-	Del	-	D	141547332	141547348	14	28	485.534	-	-	1	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	6	3	6	3	27	14	28	14	7	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454222839	3	148315732	CAAAG	C	449	PASS	-	-	-	-	-	Del	-	D	148315732	148315742	4	21	431.586	-	-	2	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	6	2	6	3	19	16	19	16	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454227145	3	161282288	GGACAT	G	269	PASS	-	-	-	-	-	Del	-	D	161282288	161282298	5	12	269.741	-	-	1	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	3	2	4	23	19	23	19	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454228441	3	164582979	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	164582979	164582987	1	12	263.721	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	5	3	27	15	27	15	5	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454228633	3	165424537	TAAACTTAAG	T	290	PASS	-	-	-	-	-	Del	-	D	165424537	165424549	9	35	539.482	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	6	8	7	37	27	37	27	8	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454228959	3	166425098	GC	G	300	PASS	-	-	-	-	-	Del	-	D	166425098	166425102	1	12	268.537	-	-	3	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	3	2	3	2	19	13	19	13	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454233513	3	179165754	AT	A	600	PASS	GNB4	CCDS3230.1	r.?	-	-	Del	intronic	D	179165754	179165759	1	32	537.676	-	-	4	1	1	GNB4|CCDS3230.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNB4|CCDS3230.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	3	7	5	10	22	36	22	36	5	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454233516	3	179167733	GAAACAATTCTACA	GGCCAAAGACTC	377	PASS	GNB4	CCDS3230.1	r.?	-	-	Complex	intronic	DI	179167734	179167746	13	54	0	-	-	0	1	1	GNB4|CCDS3230.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	GNB4|CCDS3230.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	8	5	0	0	23	20	24	20	8	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454233550	3	179260905	GGACAAATATCCAAATCGTACTAATAAAGGATACATTTAGAGACAAGCAAGCTTTCAGAATCCTTCAAATTGTACTGGGAAAGCAGCTTCTCTTCATCACCTCCCCTCTACCCTTCCCAACCTCTGGTA	G	276	PASS	-	-	-	-	-	Del	-	D	179260905	179261035	128	32	538.88	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	7	0	0	15	12	18	19	3	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454233836	3	180385780	TA	T	360	PASS	CCDC39	CCDS46964.1	r.?	-	-	Del	intronic	D	180385780	180385785	1	15	323.689	-	-	4	1	1	CCDC39|CCDS46964.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC39|CCDS46964.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	2	4	8	4	28	18	28	18	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454233867	3	180491909	C	CT	300	PASS	CCDC39	ENST00000471307	r.?	-	-	Ins	intronic	I	180491909	180491916	1	6	266.731	-	-	6	1	1	CCDC39|ENST00000471307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCDC39|ENST00000471307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	0	5	0	33	31	33	32	5	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454234130	3	181184575	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	181184575	181184576	1	12	320.077	-	-	0	1	1	-	-	./.	0	0	0	0	11	8	11	9	0	0	./.	5	1	5	2	28	21	29	21	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454237889	3	190051927	AGTAATTAAAAATCTATTTGAGAAATAACTTGTAGCAAACTGGAGTACAGAGTGATTGTTGTTAGGATAAAACTATACGTGTGTGTTTAGCACAATGAGGGAAGTTGTAGTGGGCTAGCAGAAGGATGTACTCAGATTAGGGAGAGCAATATCAGATAAGAGGAAAAGTATTTGAGAAGTGGAAGGATAAGAAATTTGACTGGAGTATATGCTATATCAGGTAGGGAGCCATGGAATATGAAGCTGCAAAATGGAATAAAGAGACTGAGAAGGGCCCACTATGCTAAAGACTTTGAGCTTCATCTCTTAGGTTGTGTGCAAGCACTGAATGATTTGTGGACAAGCACTGGACAATTTTTTGTGTGTGCTCCTCTACATCCATTCTGCAACATTTTCCACTCAGTCTGTTCCCCAGCAACTGAATCTTTCCACTTGCATTCATAGTCTCTCTTGCTCTCTGGCTTTGGCCAAAGAGAAGCACCTTTAGAAAGTCAGAGCACAGGAGAAAAGTGAAACTGGAATGGTAGATGTTGTTGGTAACCACCACGTCATCTTCTTTGTTAGGAGGGTAACCCATCTCCCAGGTGCTACAGGTATTGGTTACTAGCAAATTGCATTGTTAGCAGCAATGAGGAAAGCCCTTGGCTAGTGAGAGCCATGTGACTTAGAGATGCCTGGGAAGGTATGCAGCTTTCCTCTTCACCAGTGGCTGGTAAGCGGTGGTTGACCTATGCAATGGTGGAACAGCCTTGCCCCCTTGCATCTAGGCAGTAGAATCTCTGGAAACAATTTGTACTCCAGAGCTC	A	298	PASS	-	-	-	-	-	Del	-	D	190051927	190052735	805	35	539.482	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	4	0	0	25	22	31	26	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454237929	3	190147312	ACTATTC	A	377	PASS	TMEM207	CCDS3297.1	r.574_579delGAAUAG	c.?	p.?	Del	3'UTR variant	D	190147312	190147322	6	54	701.327	-	-	1	1	1	TMEM207|CCDS3297.1|r.574_579delGAAUAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TMEM207|CCDS3297.1|r.574_579delGAAUAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	14	10	14	0	0	./.	5	8	6	7	33	41	33	42	6	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454238537	3	191682700	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	191682700	191682710	1	12	261.914	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	2	3	2	3	32	28	33	29	2	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454244208	4	8337481	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	8337481	8337490	1	7	319.887	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	0	6	0	7	16	33	16	33	0	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454244368	4	8831219	GA	G	360	PASS	-	-	-	-	-	Del	-	D	8831219	8831225	1	15	323.499	-	-	5	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	2	4	5	5	16	20	16	20	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454244969	4	10571297	A	AT	360	PASS	CLNK	CCDS47024.1	r.?	-	-	Ins	intronic	I	10571297	10571300	1	12	319.285	-	-	2	1	1	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	5	4	6	20	22	20	22	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454245034	4	10775647	ACTTCATTAAAATT	A	290	PASS	-	-	-	-	-	Del	-	D	10775647	10775664	13	32	537.961	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	7	3	7	18	15	18	15	3	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454245322	4	11639292	TA	T	300	PASS	-	-	-	-	-	Del	-	D	11639292	11639297	1	10	269.583	-	-	4	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	6	3	24	23	24	23	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454249398	4	24082562	G	GTGTT	329	PASS	-	-	-	-	-	Ins	-	I	24082562	24082577	4	16	309.05	-	-	3	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	3	4	4	27	30	27	30	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454251425	4	29582999	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	29582999	29583000	1	10	262.358	-	-	0	1	-	-	-	./.	0	0	0	0	8	11	9	11	0	0	./.	4	1	4	1	31	26	31	26	4	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454252693	4	33662605	AG	A	540	PASS	-	-	-	-	-	Del	-	D	33662605	33662609	1	30	485.249	-	-	3	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	5	4	5	22	20	22	20	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454253695	4	37099150	TGTACGACA	T	406	PASS	-	-	-	-	-	Del	-	D	37099150	37099159	8	63	754.831	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	6	8	7	8	22	23	22	23	7	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454257874	4	48615143	GTTGT	G	269	PASS	FRYL	CCDS43227.1	r.?	-	-	Del	intronic	D	48615143	48615154	4	10	269.583	-	-	2	1	1	FRYL|CCDS43227.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRYL|CCDS43227.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	1	4	1	5	21	40	21	40	1	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454259042	4	53018221	GGCA	G	474	PASS	-	-	-	-	-	Del	-	D	53018221	53018227	3	42	593.082	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	6	5	6	28	23	28	23	5	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454261055	4	58479523	CA	C	300	PASS	-	-	-	-	-	Del	-	D	58479523	58479529	1	12	269.583	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	5	5	22	22	22	22	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454263219	4	64703302	T	TTA	360	PASS	-	-	-	-	-	Ins	-	I	64703302	64703312	2	15	316.274	-	-	4	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	4	2	6	4	28	27	28	28	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454263549	4	65732416	GA	G	540	PASS	-	-	-	-	-	Del	-	D	65732416	65732422	1	28	485.249	-	-	5	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	6	3	9	5	25	22	25	22	9	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454265129	4	70090809	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	70090809	70090815	1	10	266.572	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	13	12	0	0	./.	1	4	3	5	23	29	23	29	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454267035	4	75657127	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	75657127	75657137	1	48	745.199	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	11	3	12	3	39	19	40	20	12	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454273415	4	94554803	TC	T	329	PASS	GRID2	CCDS3637.1	r.?	-	-	Del	intronic	D	94554803	94554805	1	15	323.499	-	-	1	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	4	2	4	6	18	18	18	18	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454275596	4	102475118	CAGTGAATAA	C	261	PASS	BANK1	ENST00000504592	r.?	-	-	Del	intronic	D	102475118	102475131	9	28	485.249	-	-	1	1	1	BANK1|ENST00000504592|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BANK1|ENST00000504592|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	6	3	6	4	22	21	22	21	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454281485	4	120738741	TC	T	540	PASS	-	-	-	-	-	Del	-	D	120738741	120738743	1	30	485.249	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	4	6	10	32	28	32	28	6	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454282187	4	122918146	ACTTACTCGAATTTGAATCTCTGGCACCTAGTATATAATAGCTC	A	290	PASS	-	-	-	-	-	Del	-	D	122918146	122918194	43	32	539.165	-	-	1	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	7	3	2	0	14	16	19	19	7	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454283250	4	126192645	AGTAATAAAGAATTCCTTCT	A	290	PASS	-	-	-	-	-	Del	-	D	126192645	126192667	19	35	539.165	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	6	4	6	4	31	26	31	26	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454284874	4	131257308	GTTCT	G	507	PASS	-	-	-	-	-	Del	-	D	131257308	131257316	4	35	539.165	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	6	4	6	4	14	21	14	21	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454286400	4	135631444	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	135631444	135631452	1	24	426.516	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	5	4	5	28	20	28	20	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454287823	4	139905750	GAGTTCATCTGGGTTGTC	G	319	PASS	-	-	-	-	-	Del	-	D	139905750	139905768	17	36	593.082	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	8	3	8	18	23	18	23	3	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454290577	4	148848100	TGTGAGACAG	T	298	PASS	ARHGAP10	CCDS34075.1	r.?	-	-	Del	intronic	D	148848100	148848113	9	35	539.165	-	-	1	1	1	ARHGAP10|CCDS34075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP10|CCDS34075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	6	4	5	5	26	17	27	17	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454292159	4	153953935	T	TCTTTTAAGATA	319	PASS	ENSG00000235872	ENST00000449499	r.?	-	-	Ins	intronic	I	153953935	153953941	11	40	518.426	-	-	0	1	1	ENSG00000235872|ENST00000449499|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000235872|ENST00000449499|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	7	4	7	4	31	26	32	26	7	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454296068	4	164747300	GTTTAA	G	418	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	164747300	164747310	5	24	431.332	-	-	1	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	5	5	6	22	22	22	22	5	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454298009	4	170008616	GTCATCAGATTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATC	G	261	PASS	-	-	-	-	-	Del	-	D	170008616	170008701	82	30	485.249	-	-	1	1	-	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	4	0	0	15	10	20	14	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454298640	4	172092472	AAACACCTTTGGATTTTAAAAATAT	A	377	PASS	-	-	-	-	-	Del	-	D	172092472	172092501	24	54	699.109	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	8	5	6	4	28	20	30	21	8	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454302887	4	183647286	AAAAACTTAAAAT	A	285	PASS	ODZ3	CCDS47165.1	r.?	-	-	Del	intronic	D	183647286	183647300	12	27	537.961	-	-	1	1	1	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	5	0	0	./.	2	8	1	6	12	17	13	21	2	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454305525	4	190249216	ATCTCTTAGGTTTAGAAATATTGTT	A	319	PASS	-	-	-	-	-	Del	-	D	190249216	190249243	24	42	593.082	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	6	5	6	5	21	14	21	14	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454312046	5	15188756	AACAAATTTCTTCTTAATGTTGTT	A	290	PASS	-	-	-	-	-	Del	-	D	15188756	15188782	23	36	539.782	-	-	1	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	5	5	4	4	29	32	30	33	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454315545	5	23962910	A	AG	660	PASS	C5orf17	ENST00000507936	r.?	-	-	Ins	intronic	I	23962910	23962911	1	42	587.137	-	-	0	1	1	C5orf17|ENST00000507936|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C5orf17|ENST00000507936|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	15	0	0	./.	5	6	6	7	25	31	25	31	6	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454316104	5	25567584	TTTGAG	T	269	PASS	-	-	-	-	-	Del	-	D	25567584	25567593	5	10	266.279	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	1	4	1	4	19	25	19	25	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454322563	5	42619246	TC	T	300	PASS	GHR	CCDS3940.1	r.?	-	-	Del	intronic	D	42619246	42619248	1	6	269.891	-	-	1	1	1	GHR|CCDS3940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GHR|CCDS3940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	0	7	0	27	21	27	21	7	0	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454326313	5	57446559	AT	A	780	PASS	-	-	-	-	-	Del	-	D	57446559	57446564	1	54	701.716	-	-	4	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	5	8	7	9	21	30	21	30	7	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454330353	5	71889261	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	71889261	71889270	1	15	319.053	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	2	4	3	27	22	27	22	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454336663	5	90801264	AG	A	420	PASS	-	-	-	-	-	Del	-	D	90801264	90801266	1	20	377.847	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	3	6	6	39	28	39	28	6	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454346341	5	123772962	AGTGAT	A	267	PASS	-	-	-	-	-	Del	-	D	123772962	123772970	5	16	323.869	-	-	1	1	1	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	3	3	4	5	25	43	25	43	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454346496	5	124165987	AT	A	300	PASS	-	-	-	-	-	Del	-	D	124165987	124165989	1	10	269.891	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	1	5	2	23	23	23	23	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454347408	5	126474722	TATGATACTAC	T	290	PASS	-	-	-	-	-	Del	-	D	126474722	126474737	10	35	539.782	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	6	4	7	15	31	15	31	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454354122	5	146074850	AT	A	300	PASS	PPP2R2B	CCDS4284.1	r.?	-	-	Del	intronic	D	146074850	146074860	1	12	269.891	-	-	9	1	1	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R2B|CCDS4284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	2	3	28	33	28	33	2	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454354376	5	146858638	G	GA	300	PASS	DPYSL3	ENST00000343218	r.?	-	-	Ins	intronic	I	146858638	146858648	1	12	266.881	-	-	9	1	1	DPYSL3|ENST00000343218|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPYSL3|ENST00000343218|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	4	3	36	21	36	21	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454358420	5	159736676	TCCATGAA	T	290	PASS	CCNJL	CCDS4350.2	r.?	-	-	Del	intronic	D	159736676	159736684	7	32	539.18	-	-	1	1	1	CCNJL|CCDS4350.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCNJL|CCDS4350.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	7	5	9	23	25	23	25	5	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454375187	6	21015150	GTTTTTTTCTAATAT	GTTAAAT	319	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Complex	intronic	DI	21015151	21015164	14	42	0	-	-	0	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	5	6	0	0	28	22	28	23	5	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454375645	6	22036413	AT	A	480	PASS	-	-	-	-	-	Del	-	D	22036413	22036419	1	24	431.764	-	-	5	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	5	4	7	20	27	20	27	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454379081	6	29815936	G	GCTCT	420	PASS	-	-	-	-	-	Ins	-	I	29815936	29815937	4	20	359.731	-	-	0	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	4	3	4	17	20	17	20	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454382908	6	36683263	C	CT	300	PASS	RAB44	ENST00000355623	r.404_405insu	c.59_60insT	p.L21fs*63	Ins	frameshift	I	36683263	36683267	1	10	266.842	-	-	3	1	1	RAB44|ENST00000355623|r.404_405insu|c.59_60insT|p.L21fs*63|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	RAB44|ENST00000355623|r.404_405insu|c.59_60insT|p.L21fs*63|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	13	11	13	12	0	0	./.	4	1	7	1	23	21	23	21	7	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454383564	6	38159062	T	TA	720	PASS	BTBD9	CCDS47418.1	r.?	-	-	Ins	intronic	I	38159062	38159068	1	45	640.421	-	-	5	1	1	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	8	4	8	9	29	25	29	26	8	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454384238	6	40258167	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	40258167	40258175	1	30	477.305	-	-	7	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	4	5	5	7	28	26	28	26	5	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454387487	6	49740208	GGTTTGGAATGTTTCT	G	348	PASS	-	-	-	-	-	Del	-	D	49740208	49740225	15	45	647.645	-	-	1	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	4	8	4	8	18	21	18	21	4	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454388009	6	51504613	TTTA	T	269	PASS	PKHD1	CCDS4935.1	r.?	-	-	Del	intronic	D	51504613	51504618	3	12	269.852	-	-	1	1	1	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	3	2	5	2	19	19	19	19	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454388361	6	52463218	TCCTGGGGCCC	T	319	PASS	-	-	-	-	-	Del	-	D	52463218	52463234	10	36	591.869	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	8	3	8	18	21	18	21	3	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454391422	6	58562635	AT	A	337	PASS	-	-	-	-	-	Del	-	D	58562635	58562641	1	16	323.823	-	-	5	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	5	3	21	20	21	20	5	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454392114	6	63636658	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	63636658	63636666	1	24	425.141	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	3	6	6	17	33	17	33	6	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454396986	6	78009675	CACTTTGAAGAATTTCT	C	290	PASS	-	-	-	-	-	Del	-	D	78009675	78009694	16	35	538.5	-	-	1	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	6	4	6	4	25	24	25	24	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454397664	6	80322941	GAGAGA	G	356	PASS	-	-	-	-	-	Del	-	D	80322941	80322949	5	16	431.162	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	7	1	8	1	27	19	27	19	8	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454398876	6	84325575	AATAGTTGCATTTTG	A	464	PASS	SNAP91	CCDS47455.1	r.?	-	-	Del	intronic	D	84325575	84325594	14	65	863.527	-	-	1	1	1	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	12	3	11	24	26	25	27	4	12	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454402833	6	96844613	CTAAGTCAT	C	348	PASS	-	-	-	-	-	Del	-	D	96844613	96844625	8	45	646.441	-	-	1	1	1	-	-	./.	0	0	0	0	4	19	4	19	0	0	./.	4	8	4	9	28	25	28	25	4	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454403162	6	97973212	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	97973212	97973222	1	16	320.21	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	3	4	3	27	27	27	28	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454404037	6	100621623	ATTTGAAAG	A	464	PASS	-	-	-	-	-	Del	-	D	100621623	100621634	8	80	863.527	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	7	9	9	10	24	26	24	26	9	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454407571	6	110586578	ACCGTGG	A	317	PASS	C6orf186	CCDS43489.1	r.?	-	-	Del	intronic	D	110586578	110586585	6	49	647.043	-	-	1	1	1	C6orf186|CCDS43489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf186|CCDS43489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	6	6	8	6	19	17	19	17	8	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454414134	6	130119146	TTGTACATACA	T	261	PASS	-	-	-	-	-	Del	-	D	130119146	130119160	10	30	479.713	-	-	1	1	-	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	4	8	4	41	20	41	20	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454418530	6	142527717	ATATGAACTCCAACTATCTAAAGTTTATATGGAGTGGCAGAAGACCCAGAATAATCAACGTAG	A	290	PASS	VTA1	CCDS5197.1	r.?	-	-	Del	intronic	D	142527717	142527782	62	36	539.704	-	-	1	1	1	VTA1|CCDS5197.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VTA1|CCDS5197.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	5	5	0	0	17	19	22	24	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454420514	6	149386271	TC	T	420	PASS	UST	CCDS5213.1	r.?	-	-	Del	intronic	D	149386271	149386273	1	18	377.793	-	-	1	1	1	UST|CCDS5213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UST|CCDS5213.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	5	2	7	12	21	12	21	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454426439	6	167914624	G	GT	269	PASS	ENSG00000233092	ENST00000439231	r.?	-	-	Ins	intronic	I	167914624	167914634	1	12	266.842	-	-	9	1	1	ENSG00000233092|ENST00000439231|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000233092|ENST00000439231|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	12	17	0	0	./.	2	3	2	3	22	18	23	19	2	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454427932	7	1874675	C	CA	267	PASS	MAD1L1	CCDS43539.1	r.?	-	-	Ins	intronic	I	1874675	1874679	1	24	427.104	-	-	3	1	1	MAD1L1|CCDS43539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAD1L1|CCDS43539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	7	6	27	29	27	29	7	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454429743	7	5838075	AT	A	420	PASS	-	-	-	-	-	Del	-	D	5838075	5838078	1	14	377.93	-	-	2	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	6	2	7	19	28	19	28	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454432145	7	11902480	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	11902480	11902482	1	15	316.716	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	2	5	3	23	19	23	20	5	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454432339	7	12403318	GA	G	360	PASS	VWDE	CCDS47544.1	r.?	-	-	Del	intronic	D	12403318	12403322	1	15	323.94	-	-	3	1	1	VWDE|CCDS47544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VWDE|CCDS47544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	4	6	18	33	18	33	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454433091	7	14370619	TA	T	540	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14370619	14370628	1	28	485.911	-	-	8	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	6	3	7	4	37	26	37	26	7	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454435034	7	20003879	TGAGAATGAGCAAAA	T	319	PASS	-	-	-	-	-	Del	-	D	20003879	20003899	14	42	593.891	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	6	5	7	6	31	26	31	26	7	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454438556	7	28663568	GGATAT	G	269	PASS	CREB5	CCDS5417.1	r.?	-	-	Del	intronic	D	28663568	28663578	5	10	269.95	-	-	1	1	1	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	4	1	6	2	23	29	23	29	6	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454438963	7	29694748	TA	T	1080	PASS	-	-	-	-	-	Del	-	D	29694748	29694753	1	100	971.821	-	-	4	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	9	9	12	13	33	36	33	36	12	13	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454439319	7	31091634	AGAGACTGGAAAGAGGGTGGTGAGCCCAG	A	261	PASS	ADCYAP1R1	CCDS5433.1	r.?	-	-	Del	upstream	D	31091634	31091666	28	30	485.911	-	-	1	1	1	ADCYAP1R1|CCDS5433.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AC006978.1|ENST00000507825|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	4	5	2	30	16	30	18	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454442080	7	38377815	GCCATTCTCCTGCCTCAGCCTTCTCAGTAGCTGGGACTACAGGCA	G	377	PASS	AC007245.3	ENST00000515771	r.?	-	-	Del	upstream	D	38377815	38377862	44	56	699.463	-	-	1	1	1	AC007245.3|ENST00000515771|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC007245.3|ENST00000515771|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	9	9	9	9	0	0	./.	7	6	3	2	19	17	23	21	7	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454442978	7	40349505	AAC	A	269	PASS	C7orf10	ENST00000309930	r.?	-	-	Del	intronic	D	40349505	40349511	2	10	269.95	-	-	2	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	4	1	32	19	32	19	4	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454444562	7	44957232	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	44957232	44957233	1	12	266.338	-	-	0	1	1	-	-	./.	0	0	0	0	7	8	8	8	0	0	./.	2	3	3	4	25	21	25	21	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454444771	7	45552064	TA	T	720	PASS	-	-	-	-	-	Del	-	D	45552064	45552066	1	49	647.881	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	6	10	7	31	27	31	27	10	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454445423	7	47659173	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	47659173	47659178	1	6	266.94	-	-	4	1	1	-	-	./.	0	0	0	0	10	16	11	17	0	0	./.	5	0	5	2	26	16	26	16	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454446053	7	49543606	TTACG	T	896	PASS	-	-	-	-	-	Del	-	D	49543606	49543613	4	88	916.025	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	7	10	7	12	21	29	21	30	7	13	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454451187	7	64031565	CAACTTTTCG	C	290	PASS	-	-	-	-	-	Del	-	D	64031565	64031579	9	36	539.901	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	5	5	5	18	20	18	20	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454453283	7	68633924	AC	A	300	PASS	-	-	-	-	-	Del	-	D	68633924	68633926	1	12	269.95	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	2	4	24	16	24	16	2	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454457157	7	79274100	CTACT	C	360	PASS	-	-	-	-	-	Del	-	D	79274100	79274106	4	15	323.94	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	4	2	5	2	28	23	28	23	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454457369	7	80186891	C	CA	540	PASS	CD36	CCDS34673.1	r.?	-	-	Ins	intronic	I	80186891	80186897	1	28	479.288	-	-	5	1	1	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	3	6	3	6	17	32	17	32	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454457439	7	80352626	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	80352626	80352632	1	15	319.726	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	4	4	6	21	19	21	19	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454457440	7	80352881	GTGTTGTTTTC	G	261	PASS	-	-	-	-	-	Del	-	D	80352881	80352893	10	28	482.298	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	6	5	7	23	25	23	25	5	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454460723	7	90230260	TGGTCCCTGTCCTCAA	T	290	PASS	CDK14	ENST00000380050	r.?	-	-	Del	intronic	D	90230260	90230278	15	36	539.901	-	-	1	1	1	CDK14|ENST00000380050|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDK14|ENST00000380050|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	5	5	5	20	17	20	17	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454462460	7	96717094	TA	T	780	PASS	-	-	-	-	-	Del	-	D	96717094	96717100	1	56	701.871	-	-	5	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	7	8	10	15	17	15	17	8	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454465004	7	104640349	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	104640349	104640356	1	12	266.94	-	-	6	1	1	-	-	./.	0	0	0	0	11	7	12	7	0	0	./.	2	3	3	4	16	19	17	19	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454465364	7	105672080	GC	G	387	PASS	CDHR3	CCDS47684.1	r.?	-	-	Del	intronic	D	105672080	105672084	1	24	431.921	-	-	3	1	1	CDHR3|CCDS47684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDHR3|CCDS47684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	5	6	8	19	18	19	18	6	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454471095	7	126962166	CTAGCTAGTCTTTTAAAAAACA	C	261	PASS	-	-	-	-	-	Del	-	D	126962166	126962190	21	30	485.911	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	4	6	4	24	15	24	15	6	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454472758	7	130838413	G	GTT	269	PASS	MKLN1	ENST00000421797	r.?	-	-	Ins	intronic	I	130838413	130838422	2	10	259.715	-	-	8	1	1	MKLN1|ENST00000421797|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MKLN1|ENST00000421797|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	0	4	24	18	24	18	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454477948	7	144608697	CA	C	1016	PASS	-	-	-	-	-	Del	-	D	144608697	144608704	1	110	1025.81	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	9	10	11	15	17	34	17	34	11	15	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454478359	7	145577753	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	145577753	145577762	1	20	373.716	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	4	3	39	33	39	33	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454478855	7	146991388	AAAGTTCATTTTTTCATTCTCACTTTTTAGAAAT	A	290	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146991388	146991424	33	36	539.901	-	-	1	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	5	5	4	3	33	26	34	28	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454481562	7	152390740	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	152390740	152390741	1	10	264.532	-	-	0	1	-	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	1	4	25	34	25	34	1	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454482353	7	154250678	TA	T	478	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154250678	154250685	1	30	485.911	-	-	6	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	5	4	9	11	35	43	35	43	9	11	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454486113	8	4511474	AGGATT	A	540	PASS	-	-	-	-	-	Del	-	D	4511474	4511487	5	28	485.661	-	-	2	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	6	3	7	3	34	30	34	30	7	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454497525	8	34509108	G	GT	277	PASS	-	-	-	-	-	Ins	-	I	34509108	34509116	1	12	266.801	-	-	7	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	7	2	43	40	43	40	7	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454498158	8	36223169	TAATATGGCTCTTAAAAAAAG	T	290	PASS	-	-	-	-	-	Del	-	D	36223169	36223196	20	35	535.409	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	6	4	6	30	52	30	52	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454499641	8	39582108	C	CT	300	PASS	ADAM18	CCDS6113.1	r.?	-	-	Ins	intronic	I	39582108	39582117	1	12	266.801	-	-	8	1	1	ADAM18|CCDS6113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM18|CCDS6113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	14	0	0	./.	2	3	2	3	50	31	50	33	2	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454499911	8	40072435	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	40072435	40072453	2	12	269.21	-	-	8	1	-	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	3	4	41	44	41	44	3	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454500395	8	41121146	TG	T	480	PASS	SFRP1	CCDS34886.1	r.2798delC	c.?	p.?	Del	3'UTR variant	D	41121146	41121152	1	9	431.699	-	-	5	1	1	SFRP1|CCDS34886.1|r.2798delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SFRP1|CCDS34886.1|r.2798delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	14	11	14	0	0	./.	0	8	0	8	27	56	27	56	0	8	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454501334	8	42925450	C	CA	300	PASS	FNTA	CCDS6140.1	r.?	-	-	Ins	intronic	I	42925450	42925459	1	6	266.801	-	-	8	1	1	FNTA|CCDS6140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FNTA|CCDS6140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	0	5	0	7	45	49	48	50	0	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454502181	8	48435893	TC	T	300	PASS	KIAA0146	CCDS43737.1	r.?	-	-	Del	intronic	D	48435893	48435895	1	12	269.812	-	-	1	1	1	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	2	3	3	3	42	35	42	35	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454503066	8	50883827	ACATGATTATCT	A	386	PASS	-	-	-	-	-	Del	-	D	50883827	50883841	11	60	748.85	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	9	8	9	43	33	43	33	8	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454504477	8	54219279	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	54219279	54219288	1	12	265.597	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	12	7	0	0	./.	3	2	4	2	43	49	45	50	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454506564	8	59167203	C	CAT	269	PASS	-	-	-	-	-	Ins	-	I	59167203	59167204	2	10	263.791	-	-	0	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	1	4	2	43	36	44	36	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454506861	8	59996945	AG	A	900	PASS	TOX	CCDS34897.1	r.?	-	-	Del	intronic	D	59996945	59996947	1	66	809.435	-	-	1	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	10	5	13	6	42	35	42	35	13	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454507601	8	62265378	TA	T	300	PASS	CLVS1	CCDS6176.1	r.?	-	-	Del	intronic	D	62265378	62265384	1	12	269.812	-	-	5	1	1	CLVS1|CCDS6176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLVS1|CCDS6176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	5	2	35	40	35	40	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454508317	8	64280669	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	64280669	64280679	1	12	316.549	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	1	5	1	50	42	50	42	5	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454509646	8	67861331	C	CT	268	PASS	-	-	-	-	-	Ins	-	I	67861331	67861341	1	12	266.199	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	10	11	0	0	./.	3	2	4	3	50	42	50	42	4	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454510239	8	69174467	GCATTGTTTATTTTTCCCTT	G	261	PASS	-	-	-	-	-	Del	-	D	69174467	69174489	19	30	485.661	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	5	4	5	37	49	37	49	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454512016	8	73643120	TA	T	1020	PASS	KCNB2	CCDS6209.1	r.?	-	-	Del	intronic	D	73643120	73643130	1	88	917.359	-	-	9	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	10	7	13	10	43	42	43	42	13	10	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454514168	8	78813657	TAC	T	269	PASS	-	-	-	-	-	Del	-	D	78813657	78813675	2	6	263.791	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	5	0	5	2	36	28	36	28	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454515506	8	82104331	TTTAAGTAGAGAAAAATCTGATGATTGG	T	261	PASS	-	-	-	-	-	Del	-	D	82104331	82104360	27	24	485.661	-	-	1	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	7	2	6	30	37	30	38	2	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454518102	8	88618659	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	88618659	88618669	1	12	264.393	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	2	3	2	39	43	40	43	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454519582	8	93088154	AAGT	A	418	PASS	RUNX1T1	CCDS6257.1	r.?	-	-	Del	intronic	D	93088154	93088159	3	21	431.699	-	-	1	1	1	RUNX1T1|CCDS6257.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RUNX1T1|CCDS6257.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	6	2	7	2	32	37	33	37	8	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454521250	8	96829146	ATGTTCTGTAAATACC	A	261	PASS	-	-	-	-	-	Del	-	D	96829146	96829166	15	28	485.661	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	3	5	3	38	29	38	29	6	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454523131	8	101518779	GC	G	300	PASS	ANKRD46	ENST00000358990	r.?	-	-	Del	downstream	D	101518779	101518784	1	12	269.812	-	-	4	1	1	ANKRD46|ENST00000358990|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ANKRD46|ENST00000358990|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	3	2	29	36	29	36	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454523571	8	102436242	CT	C	360	PASS	-	-	-	-	-	Del	-	D	102436242	102436247	1	16	323.774	-	-	4	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	3	3	30	19	30	19	3	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454527686	8	112699297	G	GCTGGTTGC	493	PASS	-	-	-	-	-	Ins	-	I	112699297	112699306	8	78	832.469	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	12	5	12	4	46	27	48	28	13	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454528395	8	114468237	TA	T	1109	PASS	-	-	-	-	-	Del	-	D	114468237	114468242	1	110	1010.83	-	-	4	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	9	10	13	12	36	44	36	44	13	12	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454528598	8	114936872	TA	T	900	PASS	-	-	-	-	-	Del	-	D	114936872	114936874	1	70	809.435	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	9	6	17	9	35	24	35	24	17	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454528760	8	115486086	GAAT	G	300	PASS	-	-	-	-	-	Del	-	D	115486086	115486096	3	12	269.812	-	-	3	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	3	2	34	31	34	31	3	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454529341	8	116991674	A	ATGGTCTATATTCACATATAGAGCATCTGAGAAAG	493	PASS	AF130342.1	ENST00000505156	r.?	-	-	Ins	intronic	I	116991674	116991681	34	88	568.767	-	-	0	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	14	8	0	0	./.	10	7	0	0	26	17	36	25	10	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454529342	8	116991756	GCAAGACAC	G	261	PASS	AF130342.1	ENST00000505156	r.?	-	-	Del	intronic	D	116991756	116991767	8	18	434.486	-	-	1	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	1	8	4	15	16	24	18	25	4	15	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454532762	8	125248866	A	AT	360	PASS	ENSG00000214803	ENST00000399016	r.?	-	-	Ins	intronic	I	125248866	125248868	1	15	320.162	-	-	1	1	1	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	3	5	44	51	44	51	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454533429	8	126799015	GT	G	296	PASS	-	-	-	-	-	Del	-	D	126799015	126799020	1	18	377.736	-	-	4	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	5	2	6	38	26	38	26	2	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454536861	8	136280376	CT	C	300	PASS	-	-	-	-	-	Del	-	D	136280376	136280379	1	6	269.812	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	0	5	2	40	34	40	34	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454538318	8	139673203	A	ACG	290	PASS	COL22A1	CCDS6376.1	r.?	-	-	Ins	intronic	I	139673203	139673205	2	36	527.582	-	-	0	1	-	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	5	0	0	36	38	36	38	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454538436	8	139963992	GAACCATTTATATAGAGCATATACCAGGACATAAGAAAAGTCTACATAATTTTTTAAAGTATTGAACATATATATAAGCAGTACGTTGTCTGAACAAAATAAAATTCAATTACAATAAGATATCTAGAAAATCCCCAAATAATTATAAATTTAGCAATGCTTTCCTAAGTAGCCTGTGGGTCCAAAAAGAAAAAGCACAAAGGAAATTAGAAAATAGTGTGCACTGAGTATTAAGGAAAGCACAAGAAAAATATCACAGGATGCAGATTAAGCAGTGCTTAGAAAATTTTCAGCTTCAAAGCAAATATTAGGGAAAACTTGTAAAATCAATCAACTAAGCTTCCATGTTAAGAAGCTCAAAAACTCAGAGCAAATTGAATATTAAGTAATTAAAAAACAATGCAATTTAAGAAGGAGCCAAAGTCAGCGAGCTGGCAAAAGAACAAATAGAGAGGAAAAGTGGGCAACTCAACATCACAGTGAGTGATCAGAGAGTCAGGGCTGGATCCCAGCTCTTCCCCAGGCTGGAACGAGTCATCTCCCTTCATCCACAGATTACTGAGCAGCTGAAGGAGACACAAAGGTGTACGTGGGAAGGAGTCAGGCCTCATGGGGATGTGTGCAGTTAAAACCCTGGGGATGCTGAAAGGAAGGACCATACAGAGCGGTGTGAGGGCCAAGTCTTCCATTACCTGACACTGGAAGCCACGTGGTTAAAACCCTGGGGATGCTGAAAGGAAGGACCATACAGAGCGGTGTGAGGGCCAAGTCTTCCATTACCTGACACTGGAAGCCATGTGGTTAAAACCCTGGGGATGCTGAAAGGAAGGACCATACAGAGCGGTGTGAGGGCCAAGTCTTCCATTACCTGACACTGGAAGCCACGTGGTTAAAACCCTGGGGATGCTGAAAGGAAGGACCATACAGAGCGGTGTGAGGGCCAAGTCTTCCATTACCTGACACTGGAAGCCACGTGGTTAAAACCCTGGGGATGCTGAAAGGAAGGACCATACAGAGCGGTGTGAGGGCCAAGTCTTCCATTACCTGACACTGGAAGCCACGTGGTTAAAACCCTGGGGATGCTGAAAGGAAGGACCATACAGAGCGGTGTGAGGGCCAAGTCTTCCATTACCTGACACTGGAAGCCACGTGGACAATCCAGAAGATGACTCACTTTGGCAGCCCTGAGAGTTAAAAACCAGTTTCCTTAGGCAAGACATTAACCTCTCTATGCTGTAATTTCACCCTTTGCAAAATGGGGAAATAGCAATGCCTCAACAACAGGGTTACTGTGAGGATGAATTAGGATGACATAGGTGAGGGGCCTGGCGGGGGTGGTGAGCACACCACAAAGGAATGCACACTGCTTTGGTCATTGCTGCTGATGTCTGAAGCAGGAAAAGGTGGTCAGGGCCATCCCTCCTGCCCCACTCAACCTTTTCTCTCCTCCCTCACCAGGGCTCTGATAGGCTCTTTCAGCTCCTGACCCTCTCCCTCTAGGATGCAGGTTCAGCCTGAGCCTGAGTCCACTTTTCTGAGGTTGAGCAACACAATTAGAATATGTGGAAAATCTGTAAACAGACACCAGCAAAGAGCCAGATGCTCCCTGGAGCCAGTCCAAGAACAATTAAGCAGCCCTTTGAAGACTAACTGAGCTGGGGGCAGTCAAGAGCTTGTCAGCTCCAGGCAGCAAGATCTCAACCTTCAGGGGCAGGGAGCACAAACCTCTCTCCCTTCCTCTCTCTCTCTGAAAGCTAAATAACAAAATATCAGCCCCTCCCAAAGGCACAGTGGTGAGATGAGGGCCACCAAAAGGCCTGCTTGGCAGGACACCCTGTCAGGTTTTGGGGAGAGAAGGGCAGAACCAGTAGCCTGCAGGTCACACTTGGCCTTTAAGGTGATCATTCATATCATTACAGTTATTATTGCTCACATGGCATTTTAAAAATCTGAATTAATTACCATCACTGAAGGATGTTGCATTTTCACATTCAAACTCACATACCCAGATTCTCTGGAGGAAGCCGTGTGTAAGGCCACAATGAGCACACACGTTCCACAAGCCACAGTGGGCTAGAGCTGAGGAGCTGCCCCTGGGAGAGTGGGTGCATCAGAATTTGCCACAGTAAGTTCCACCCCTGTGGTTTCCCCATCCTCACGCTGGCATTTCTGTCATTGCCTCTTTCTCACTTTAAACACCTGCTGGCCTATTTGTAAATTTGAGTTTACAACCTCTGCTTTAAAACAGCCCACATTTATTAGATAAAGGAAATGAGGCCTGGGAGGGAAACTGAGGAAAGAACTTGCTGAGGCCATCATCCGAGCCGAAACAAGTACAACTGCACAAGCTAGAGAACGCTGTTGTAAACCAAAAATAAAATAGGGCCCCCTAATCATCTGAATGGACACCCTCCTAAACCAGGGCTCTTTAAATTTAATCTGAGAGAGCTGGATGCAGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGACAAGGCAAGTGGATCACTGAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGA	G	348	PASS	-	-	-	-	-	Del	-	D	139963992	139966547	2550	33	647.548	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	10	2	0	0	16	13	26	15	10	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454541136	9	949368	GA	G	300	PASS	DMRT1	CCDS6442.1	r.?	-	-	Del	intronic	D	949368	949378	1	12	270.832	-	-	9	1	1	DMRT1|CCDS6442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMRT1|CCDS6442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	2	3	2	5	15	21	15	21	2	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454545725	9	15112574	AAGAT	A	360	PASS	-	-	-	-	-	Del	-	D	15112574	15112583	4	16	324.998	-	-	2	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	3	5	26	22	26	22	3	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454547564	9	20078104	GA	G	600	PASS	-	-	-	-	-	Del	-	D	20078104	20078112	1	35	541.061	-	-	7	1	1	-	-	./.	0	0	0	0	7	7	9	7	0	0	./.	4	6	4	7	11	20	16	22	4	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454550522	9	29939337	TG	T	300	PASS	-	-	-	-	-	Del	-	D	29939337	29939340	1	6	270.832	-	-	2	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	0	5	1	5	20	21	20	21	1	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454561305	9	81157717	AGGATTTTT	ATC	290	PASS	-	-	-	-	-	Complex	-	DI	81157718	81157725	8	36	0	-	-	0	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	5	5	0	0	22	29	22	29	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454561306	9	81158208	AT	A	329	PASS	-	-	-	-	-	Del	-	D	81158208	81158213	1	15	324.998	-	-	4	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	4	2	9	6	24	25	24	25	9	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454561398	9	81485727	GCTG	GA	718	PASS	-	-	-	-	-	Complex	-	DI	81485728	81485730	3	56	0	-	-	0	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	6	7	0	0	27	22	27	22	6	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454571220	9	111940393	ACTATGT	AAAC	261	PASS	EPB41L4B	CCDS43859.1	r.?	-	-	Complex	intronic	DI	111940394	111940399	6	30	0	-	-	0	1	1	EPB41L4B|CCDS43859.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	EPB41L4B|CCDS43859.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	0	0	20	19	20	19	5	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454572023	9	114239798	GAC	G	300	PASS	KIAA0368	CCDS48006.1	r.?	-	-	Del	intronic	D	114239798	114239816	2	12	270.832	-	-	8	1	1	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	2	3	21	20	21	20	2	3	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454582341	X	5638119	TCATTTACATTAGGTATTTCTCCTAACGCTATCCCTCCCCCCTTCCCC	T	261	PASS	-	-	-	-	-	Del	-	D	5638119	5638169	47	30	487.95	-	-	1	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	4	5	0	0	22	11	25	15	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454583667	X	10462892	AAAGGATCAT	A	290	PASS	MID1	CCDS14138.1	r.?	-	-	Del	intronic	D	10462892	10462905	9	36	539.759	-	-	1	1	1	MID1|CCDS14138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MID1|CCDS14138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	5	5	5	7	26	26	26	26	5	7	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454583988	X	12344765	GCATTCCCT	G	290	PASS	FRMPD4	CCDS35201.1	r.?	-	-	Del	intronic	D	12344765	12344775	8	35	542.167	-	-	1	1	1	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMPD4|CCDS35201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	9	3	9	0	0	./.	6	4	6	5	21	17	21	17	6	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454584561	X	14245002	AC	A	300	PASS	-	-	-	-	-	Del	-	D	14245002	14245005	1	10	271.083	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	4	1	6	22	21	22	21	1	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454586038	X	20008759	GC	G	449	PASS	AL732366.3	ENST00000500992	r.279delG	-	-	Del	non-coding variant	D	20008759	20008763	1	24	432.529	-	-	3	1	1	AL732366.3|ENST00000500992|r.279delG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	AL732366.3|ENST00000500992|r.279delG|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	12	10	12	10	0	0	./.	3	5	5	5	15	21	15	21	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454587771	X	26261438	CAAG	C	358	PASS	-	-	-	-	-	Del	-	D	26261438	26261447	3	18	379.517	-	-	2	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	2	5	2	29	21	29	21	6	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454588624	X	29221506	C	CT	600	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29221506	29221515	1	27	536.146	-	-	8	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	8	6	12	19	36	19	36	6	12	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454592066	X	42726466	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	42726466	42726476	1	24	428.917	-	-	9	1	1	-	-	./.	0	0	0	0	10	16	10	17	0	0	./.	3	5	4	5	24	32	24	32	4	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454592891	X	45876585	AGGGAGGTT	A	261	PASS	-	-	-	-	-	Del	-	D	45876585	45876596	8	24	486.746	-	-	1	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	7	2	9	17	26	17	26	2	9	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454594144	X	50713591	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	50713591	50713601	1	15	321.688	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	6	10	0	0	./.	4	2	4	2	23	24	23	26	4	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454594855	X	54184242	GT	G	420	PASS	FAM120C	CCDS14356.1	r.?	-	-	Del	intronic	D	54184242	54184247	1	20	379.517	-	-	4	1	1	FAM120C|CCDS14356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM120C|CCDS14356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	3	4	4	6	16	23	16	23	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454595139	X	55549812	C	CACACATATATGTATATATATGTATATATATACACATATGTGTGTGT	420	PASS	-	-	-	-	-	Ins	-	I	55549812	55549823	46	14	185.653	-	-	0	1	-	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	6	1	0	0	26	27	26	27	6	1	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454595371	X	56576709	AC	A	267	PASS	-	-	-	-	-	Del	-	D	56576709	56576713	1	35	542.167	-	-	3	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	6	4	7	4	19	26	20	26	8	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454598672	X	75898388	TA	T	346	PASS	-	-	-	-	-	Del	-	D	75898388	75898393	1	15	325.3	-	-	4	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	4	4	6	20	21	20	21	4	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454599055	X	77476170	CAGA	C	449	PASS	-	-	-	-	-	Del	-	D	77476170	77476176	3	21	433.733	-	-	1	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	2	6	3	6	17	18	17	18	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454599168	X	77918745	GA	G	420	PASS	ZCCHC5	CCDS14440.1	r.?	-	-	Del	upstream	D	77918745	77918753	1	14	379.517	-	-	7	1	1	ZCCHC5|CCDS14440.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZCCHC5|CCDS14440.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	4	9	4	0	0	./.	1	6	3	6	15	15	15	15	3	6	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454604679	X	98785997	GA	G	420	PASS	-	-	-	-	-	Del	-	D	98785997	98786004	1	20	379.517	-	-	6	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	4	3	4	4	22	25	22	25	4	4	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454605819	X	103265776	G	GA	300	PASS	H2BFWT	CCDS35362.1	r.836_837insu	c.?	p.?	Ins	3'UTR variant	I	103265776	103265781	1	12	268.073	-	-	4	1	1	H2BFWT|CCDS35362.1|r.836_837insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	H2BFWT|CCDS35362.1|r.836_837insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	6	6	6	6	0	0	./.	3	2	5	2	22	13	23	14	5	2	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454614628	X	144839280	AG	A	420	PASS	-	-	-	-	-	Del	-	D	144839280	144839283	1	20	379.517	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	3	5	5	28	19	28	19	5	5	1	1	1	1	1	1	1	1
2269362	PD14434a	PD14434b	2454615280	X	147290134	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	147290134	147290140	1	20	375.302	-	-	5	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	3	4	5	14	21	14	21	4	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708689320	1	28162121	GAAACTGGCTAAGTGATTGTTTAAGGAAAAGAGTGTGACCCACAGTACTTATTCTCTCCTTAAAATATTCCTTGCCATATGGTGCATTTTTTGATGTAAGTAGAATGAAGAAAATATATAATGTGGTTAAAACAGCTTAGACTCTGAAGCCAGACAAATCTGAATTTCTAACCCGGCCCACAAGTATCTAACTGTGTGAACTTGAGTATGTTAATTTCTTTATGCCTCAATTTTGTCATTTATAAAAATAGGAAGAGAATAGTATTACCCACCTCATAGGGTGGTTGTGAGGATGAAATGATATAATGTAAAACTCATAGCATAGTGTGTGGCATAGAAGCGCCTAGCAGTTGTTACTGT	G	261	PASS	PPP1R8	CCDS312.1	r.?	-	-	Del	intronic	D	28162121	28162483	359	24	482.248	-	-	1	1	1	PPP1R8|CCDS312.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPP1R8|CCDS312.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	7	0	0	19	19	21	26	2	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708693750	1	41029590	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	41029590	41029598	1	12	318.689	-	-	7	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	1	5	2	6	12	21	12	21	2	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708706834	1	80198114	GT	G	420	PASS	-	-	-	-	-	Del	-	D	80198114	80198119	1	14	376.018	-	-	4	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	6	1	6	20	19	20	19	1	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708713590	1	98888306	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	98888306	98888315	1	12	261.962	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	3	3	34	32	34	32	3	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708716363	1	106278364	GT	G	1140	PASS	-	-	-	-	-	Del	-	D	106278364	106278372	1	108	1020.62	-	-	7	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	11	8	12	12	30	33	30	33	12	12	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708717174	1	108856469	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	108856469	108856477	1	21	423.112	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	15	9	0	0	./.	2	6	5	9	19	28	19	28	5	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708720290	1	117943253	C	CT	600	PASS	MAN1A2	CCDS895.1	r.?	-	-	Ins	intronic	I	117943253	117943257	1	35	531.148	-	-	3	1	1	MAN1A2|CCDS895.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAN1A2|CCDS895.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	6	4	7	6	17	13	17	13	7	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708725805	1	149097570	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	149097570	149097580	1	24	424.918	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	14	8	0	0	./.	3	5	4	9	34	38	34	38	4	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708731981	1	161351449	CTCTACTAAAA	C	667	PASS	-	-	-	-	-	Del	-	D	161351449	161351460	10	150	1228.26	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	9	14	11	14	22	30	22	30	11	14	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708734268	1	166693686	GT	G	1680	PASS	-	-	-	-	-	Del	-	D	166693686	166693690	1	225	1503.47	-	-	3	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	14	14	25	20	37	29	37	29	25	20	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708736817	1	172454622	GAATGATATTTCTTTTAGAGAT	G	406	PASS	-	-	-	-	-	Del	-	D	172454622	172454645	21	64	752.036	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	7	7	6	6	24	22	25	23	7	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708745773	1	192053587	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	192053587	192053597	1	12	263.166	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	3	2	3	3	52	44	52	44	3	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708750919	1	203211349	CT	C	420	PASS	-	-	-	-	-	Del	-	D	203211349	203211355	1	18	376.018	-	-	5	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	2	5	3	35	26	35	26	5	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708754855	1	211874417	TA	T	360	PASS	-	-	-	-	-	Del	-	D	211874417	211874419	1	7	318.689	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	0	6	0	7	34	45	34	45	0	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708756526	1	215178270	CCT	C	300	PASS	KCNK2	CCDS41466.1	r.?	-	-	Del	upstream	D	215178270	215178285	2	12	268.584	-	-	7	1	1	KCNK2|CCDS41466.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KCNK2|CCDS41466.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	21	10	21	0	0	./.	2	3	2	3	34	43	34	43	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708756951	1	216280740	CT	C	2280	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216280740	216280743	1	375	2037.03	-	-	2	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	14	24	22	36	41	60	41	60	22	36	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708759423	1	222060519	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	222060519	222060534	2	10	267.38	-	-	7	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	4	1	40	24	40	24	5	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708760654	1	224579077	A	AC	360	PASS	WDR26	CCDS31037.1	r.?	-	-	Ins	intronic	I	224579077	224579078	1	7	315.678	-	-	0	1	-	WDR26|CCDS31037.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR26|CCDS31037.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	6	0	1	0	44	41	45	41	7	0	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708765518	1	235096329	C	CAA	269	PASS	-	-	-	-	-	Ins	-	I	235096329	235096338	2	6	258.951	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	0	5	1	0	41	30	42	30	1	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708766280	1	236308301	CGGCCCAGGGGCCCA	C	696	PASS	GPR137B	CCDS1609.1	r.?	-	-	Del	intronic	D	236308301	236308316	14	169	1287.4	-	-	1	1	1	GPR137B|CCDS1609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR137B|CCDS1609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	12	12	16	17	31	35	31	35	16	17	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708766939	1	237226904	ACT	A	360	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237226904	237226921	2	12	322.301	-	-	8	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	5	1	6	1	33	37	33	37	6	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708767748	1	238863819	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	238863819	238863829	1	15	318.087	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	3	7	41	43	41	44	3	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708767757	1	238884463	T	TGTGA	358	PASS	-	-	-	-	-	Ins	-	I	238884463	238884469	4	18	359.16	-	-	1	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	5	2	6	3	33	42	33	42	6	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708768880	1	241145420	T	TA	269	PASS	RGS7	CCDS31071.1	r.?	-	-	Ins	intronic	I	241145420	241145427	1	12	265.574	-	-	6	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	3	2	6	2	34	32	35	32	6	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708770188	1	243547415	G	GA	300	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Ins	intronic	I	243547415	243547425	1	12	263.768	-	-	9	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	2	3	43	35	44	35	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708772279	1	247215842	G	GT	360	PASS	ZNF670	CCDS31087.1	r.?	-	-	Ins	intronic	I	247215842	247215852	1	16	317.485	-	-	9	1	1	ZNF670|CCDS31087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF670|CCDS31087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	3	1	0	38	40	38	40	3	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708773982	10	2124225	TGG	T	300	PASS	-	-	-	-	-	Del	-	D	2124225	2124228	2	10	269.865	-	-	2	1	-	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	1	4	2	4	19	21	19	21	2	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708788509	10	37126053	CTAAT	C	420	PASS	-	-	-	-	-	Del	-	D	37126053	37126058	4	20	377.209	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	3	4	6	5	26	27	26	27	6	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708791583	10	45416987	AT	A	1080	PASS	TMEM72	CCDS41504.1	r.?	-	-	Del	intronic	D	45416987	45416990	1	96	970.911	-	-	2	1	1	TMEM72|CCDS41504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM72|CCDS41504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	11	7	12	8	33	29	33	29	12	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708793556	10	53717788	A	AT	600	PASS	PRKG1	CCDS7244.1	r.?	-	-	Ins	intronic	I	53717788	53717797	1	36	533.709	-	-	8	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	5	5	6	7	32	40	32	40	6	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708793709	10	54129374	CAG	C	780	PASS	-	-	-	-	-	Del	-	D	54129374	54129379	2	44	701.047	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	10	5	10	22	31	22	31	5	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708795339	10	57991030	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	57991030	57991039	1	18	372.994	-	-	8	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	2	5	3	7	16	26	16	27	3	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708802237	10	75898299	ACAATCATTT	A	261	PASS	AP3M1	CCDS7342.1	r.?	-	-	Del	upstream	D	75898299	75898312	9	28	479.736	-	-	1	1	1	AP3M1|CCDS7342.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AP3M1|CCDS7342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	6	3	8	4	22	15	22	15	8	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708805887	10	87563816	G	GA	840	PASS	GRID1	CCDS31236.1	r.?	-	-	Ins	intronic	I	87563816	87563825	1	63	747.193	-	-	8	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	8	6	11	9	37	29	38	29	11	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708816635	10	118025393	T	TC	420	PASS	GFRA1	CCDS44481.1	r.?	-	-	Ins	intronic	I	118025393	118025396	1	20	373.596	-	-	2	1	1	GFRA1|CCDS44481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GFRA1|CCDS44481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	5	17	5	0	0	./.	4	3	5	5	18	16	18	17	5	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708817073	10	119167476	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	119167476	119167481	2	10	269.865	-	-	2	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	1	4	2	6	19	34	19	34	2	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708820072	10	127219532	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	127219532	127219541	1	20	373.596	-	-	8	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	3	4	3	6	24	23	24	24	3	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708829964	11	16963333	T	TA	600	PASS	PLEKHA7	CCDS31434.1	r.?	-	-	Ins	intronic	I	16963333	16963341	1	27	534.067	-	-	7	1	1	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	2	8	2	11	21	35	21	35	2	11	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708831456	11	20606614	A	AAT	420	PASS	-	-	-	-	-	Ins	-	I	20606614	20606615	2	8	367.224	-	-	0	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	0	7	1	0	29	39	29	39	1	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708831712	11	21210149	T	TA	420	PASS	NELL1	CCDS7855.1	r.?	-	-	Ins	intronic	I	21210149	21210158	1	20	373.847	-	-	8	1	1	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	3	4	6	6	31	36	31	37	6	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708833631	11	25150466	ATGT	A	464	PASS	-	-	-	-	-	Del	-	D	25150466	25150472	3	30	486.079	-	-	1	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	5	6	5	31	26	31	26	6	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708837174	11	33490402	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	33490402	33490411	1	15	320.44	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	4	5	4	27	21	29	22	5	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708837383	11	33997535	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	33997535	33997545	1	15	319.236	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	2	5	5	30	23	30	23	5	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708839170	11	38713039	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	38713039	38713055	2	12	270.044	-	-	7	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	3	2	3	50	40	50	40	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708840895	11	42319555	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	42319555	42319564	1	24	470.426	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	17	10	0	0	./.	7	2	10	2	41	22	42	23	10	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708841076	11	42774477	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	42774477	42774487	1	18	370.837	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	5	4	7	41	50	41	50	4	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708848215	11	66066341	C	CA	300	PASS	TMEM151A	CCDS8133.1	r.?	-	-	Ins	downstream	I	66066341	66066349	1	6	261.013	-	-	7	1	1	TMEM151A|CCDS8133.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TMEM151A|CCDS8133.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	24	15	25	15	0	0	./.	5	0	7	2	64	46	64	46	7	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708848749	11	66703727	C	CA	480	PASS	PC	CCDS8152.1	r.?	-	-	Ins	intronic	I	66703727	66703736	1	25	426.652	-	-	8	1	1	PC|CCDS8152.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PC|CCDS8152.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	4	5	5	26	45	26	45	5	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708851764	11	72342990	T	TC	509	PASS	PDE2A	CCDS8216.1	r.?	-	-	Ins	intronic	I	72342990	72342994	1	30	480.661	-	-	3	1	1	PDE2A|CCDS8216.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE2A|CCDS8216.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	14	16	0	0	./.	4	5	5	8	21	32	21	33	5	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708869853	11	127387878	AG	A	600	PASS	-	-	-	-	-	Del	-	D	127387878	127387880	1	32	540.088	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	7	5	8	12	19	12	19	5	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708870032	11	128078909	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	128078909	128078911	1	40	587.474	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	7	7	8	12	14	12	14	7	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708877283	12	13223356	TG	T	300	PASS	KIAA1467	CCDS31750.1	r.?	-	-	Del	intronic	D	13223356	13223359	1	12	270.319	-	-	2	1	1	KIAA1467|CCDS31750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1467|CCDS31750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	2	3	4	6	22	14	22	14	4	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708893495	12	59553731	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	59553731	59553740	1	36	534.617	-	-	8	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	5	5	6	9	28	31	28	31	6	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708893683	12	60331990	T	TG	840	PASS	-	-	-	-	-	Ins	-	I	60331990	60331991	1	63	748.464	-	-	0	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	8	6	11	9	30	29	31	29	11	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708898378	12	74149350	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	74149350	74149358	1	28	481.156	-	-	7	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	6	4	8	26	32	26	33	4	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708902593	12	86890193	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	86890193	86890201	1	15	320.77	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	2	4	3	6	31	19	31	19	3	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708903701	12	90750101	T	TG	269	PASS	-	-	-	-	-	Ins	-	I	90750101	90750102	1	10	265.502	-	-	0	1	-	-	-	./.	0	0	0	0	9	14	10	14	0	0	./.	1	4	2	1	25	18	26	18	3	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708904362	12	92563416	CAAGTCTTAGAAGAATAAATATGATACATTT	C	290	PASS	AC025164.1	ENST00000499685	r.?	-	-	Del	intronic	D	92563416	92563451	30	35	540.638	-	-	1	1	1	AC025164.1|ENST00000499685|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC025164.1|ENST00000499685|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	25	13	25	0	0	./.	6	4	5	4	19	22	19	22	6	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708905882	12	96045533	TGAG	T	360	PASS	-	-	-	-	-	Del	-	D	96045533	96045541	3	16	324.383	-	-	2	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	3	3	4	5	13	15	13	15	4	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708906396	12	97281808	GCTAA	G	660	PASS	-	-	-	-	-	Del	-	D	97281808	97281817	4	36	594.1	-	-	2	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	8	3	9	4	21	16	21	16	9	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708908284	12	102954873	TA	T	441	PASS	-	-	-	-	-	Del	-	D	102954873	102954876	1	30	484.768	-	-	2	1	1	-	-	./.	0	0	0	0	23	11	23	11	0	0	./.	4	5	6	6	13	22	13	22	6	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708910310	12	109343371	GA	G	600	PASS	SVOP	ENST00000299134	r.?	-	-	Del	intronic	D	109343371	109343379	1	32	540.638	-	-	7	1	1	SVOP|ENST00000299134|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SVOP|ENST00000299134|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	7	7	9	17	27	17	27	7	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708912808	12	116706032	A	AC	480	PASS	MED13L	CCDS9177.1	r.?	-	-	Ins	intronic	I	116706032	116706033	1	21	427.694	-	-	0	1	1	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	8	9	0	0	./.	2	6	3	8	17	24	17	24	3	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708917465	12	127741510	TTC	T	420	PASS	-	-	-	-	-	Del	-	D	127741510	127741514	2	20	377.242	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	3	6	3	29	21	29	21	6	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708917921	12	128824555	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	128824555	128824559	1	12	267.309	-	-	3	1	1	-	-	./.	0	0	0	0	16	18	17	19	0	0	./.	3	2	6	2	21	12	21	12	6	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708918662	12	130618927	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	130618927	130618936	1	35	527.995	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	6	7	7	32	19	33	19	7	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708933992	13	54611701	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	54611701	54611708	1	49	642.754	-	-	6	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	6	6	7	6	31	26	31	26	7	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708935056	13	57650463	CATT	C	538	PASS	-	-	-	-	-	Del	-	D	57650463	57650468	3	35	541.649	-	-	1	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	4	6	5	7	33	34	33	34	5	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708935487	13	58906733	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	58906733	58906740	1	15	320.775	-	-	6	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	4	3	5	26	40	26	41	3	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708939776	13	70136439	CA	C	960	PASS	-	-	-	-	-	Del	-	D	70136439	70136441	1	72	866.638	-	-	1	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	5	11	6	11	22	30	22	30	6	11	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708940493	13	71973122	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	71973122	71973124	1	12	267.814	-	-	1	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	3	2	7	5	26	21	26	21	7	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708949584	13	97052106	TCATAATGCCTA	T	406	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Del	intronic	D	97052106	97052121	11	63	754.696	-	-	1	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	6	8	7	8	25	26	25	26	7	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708949968	13	98596950	GT	G	600	PASS	-	-	-	-	-	Del	-	D	98596950	98596955	1	35	541.649	-	-	4	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	6	5	6	20	20	20	20	5	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708952824	13	105743518	C	CA	509	PASS	-	-	-	-	-	Ins	-	I	105743518	105743526	1	28	482.065	-	-	7	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	3	6	3	7	25	25	25	25	3	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708957691	14	22829145	G	GA	780	PASS	TRAC	ENST00000446346	r.?	-	-	Ins	intronic	I	22829145	22829151	1	56	696.526	-	-	5	1	1	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	7	6	8	9	36	33	36	33	8	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708958949	14	25982170	TTGAATGAATGAA	T	377	PASS	-	-	-	-	-	Del	-	D	25982170	25982197	12	56	704.955	-	-	6	1	-	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	7	6	7	6	30	32	30	32	8	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708961631	14	33600859	CCTAG	C	418	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	33600859	33600865	4	21	433.819	-	-	1	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	6	2	6	3	17	10	17	10	6	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708969768	14	55171351	GA	G	720	PASS	SAMD4A	CCDS32084.1	r.?	-	-	Del	intronic	D	55171351	55171356	1	40	650.728	-	-	4	1	1	SAMD4A|CCDS32084.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMD4A|CCDS32084.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	9	6	10	15	25	15	25	6	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708975609	14	72271440	GTACATGATAAAAGTTCCTGTTGAATGC	G	261	PASS	-	-	-	-	-	Del	-	D	72271440	72271469	27	30	488.046	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	4	1	2	10	18	14	20	5	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708976239	14	74067845	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	74067845	74067854	1	16	321.752	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	3	3	4	5	17	19	17	19	4	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708980925	14	86396592	GC	G	900	PASS	-	-	-	-	-	Del	-	D	86396592	86396595	1	72	812.808	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	8	9	9	27	18	27	18	9	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708981217	14	87097032	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	87097032	87097040	1	16	321.752	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	4	6	23	42	24	43	4	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708990044	15	22307164	A	AT	417	PASS	-	-	-	-	-	Ins	-	I	22307164	22307173	1	20	375.521	-	-	8	1	1	-	-	./.	0	0	0	0	26	24	26	24	0	0	./.	3	4	7	5	55	57	55	58	7	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708992641	15	28206055	A	AG	300	PASS	OCA2	CCDS10020.1	r.?	-	-	Ins	intronic	I	28206055	28206056	1	6	268.229	-	-	0	1	1	OCA2|CCDS10020.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OCA2|CCDS10020.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	5	0	6	0	31	27	32	27	6	0	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708994194	15	33462770	A	AC	300	PASS	FMN1	ENST00000320930	r.?	-	-	Ins	intronic	I	33462770	33462774	1	12	265.219	-	-	3	1	1	FMN1|ENST00000320930|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FMN1|ENST00000320930|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	20	6	20	0	0	./.	3	2	4	2	35	21	36	21	4	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2708994477	15	34126328	T	TA	360	PASS	RYR3	CCDS45210.1	r.?	-	-	Ins	intronic	I	34126328	34126336	1	16	321.875	-	-	7	1	1	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	3	3	9	7	23	20	24	21	9	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709001651	15	53112929	GA	G	660	PASS	-	-	-	-	-	Del	-	D	53112929	53112932	1	42	596.727	-	-	2	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	5	6	7	9	28	25	28	25	7	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709005981	15	64524984	TG	T	660	PASS	CSNK1G1	CCDS10192.2	r.?	-	-	Del	intronic	D	64524984	64524987	1	40	596.727	-	-	2	1	1	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	7	4	8	6	20	16	20	16	8	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709020415	16	894468	AC	A	660	PASS	-	-	-	-	-	Del	-	D	894468	894472	1	36	596.557	-	-	3	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	8	6	8	23	47	23	47	6	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709024944	16	10143495	CAA	C	689	PASS	GRIN2A	CCDS10539.1	r.?	-	-	Del	intronic	D	10143495	10143499	2	49	648.983	-	-	3	1	1	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	6	7	7	27	36	27	36	7	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709026460	16	12804466	TCA	T	420	PASS	CPPED1	CCDS42120.1	r.?	-	-	Del	intronic	D	12804466	12804469	2	18	379.627	-	-	1	1	1	CPPED1|CCDS42120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPPED1|CCDS42120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	5	5	7	29	28	29	28	5	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709032695	16	26732262	TA	T	300	PASS	-	-	-	-	-	Del	-	D	26732262	26732266	1	10	269.958	-	-	3	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	1	4	2	7	26	33	26	33	2	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709038537	16	47228816	GA	G	420	PASS	ITFG1	CCDS10728.1	r.?	-	-	Del	intronic	D	47228816	47228819	1	18	379.627	-	-	2	1	1	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	5	2	5	5	10	8	10	8	5	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709042885	16	60873621	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	60873621	60873627	1	30	588.73	-	-	5	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	9	2	12	5	27	10	28	10	12	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709043049	16	61609022	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	61609022	61609031	1	24	476.653	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	7	3	9	16	17	18	18	3	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709043366	16	62837619	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	62837619	62837628	1	16	320.578	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	3	4	3	12	15	13	15	4	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709045545	16	70986584	C	CA	600	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Ins	intronic	I	70986584	70986591	1	35	536.304	-	-	6	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	32	24	32	0	0	./.	4	6	6	7	50	36	50	37	6	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709061491	17	21701711	TATAA	T	389	PASS	-	-	-	-	-	Del	-	D	21701711	21701720	4	14	379.606	-	-	2	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	6	1	7	2	23	16	23	16	7	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709066761	17	37574347	A	AAAG	329	PASS	MED1	CCDS11336.1	r.?	-	-	Ins	intronic	I	37574347	37574350	3	7	310.325	-	-	0	1	-	MED1|CCDS11336.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED1|CCDS11336.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	0	6	0	6	15	20	15	20	0	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709077130	17	62983233	GTATATA	G	377	PASS	-	-	-	-	-	Del	-	D	62983233	62983242	6	50	704.983	-	-	4	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	4	9	5	10	21	32	21	32	5	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709079370	17	68178622	A	AT	540	PASS	KCNJ2	CCDS11688.1	r.?	-	-	Ins	downstream	I	68178622	68178631	1	28	482.647	-	-	8	1	1	KCNJ2|CCDS11688.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KCNJ2|CCDS11688.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	19	12	19	0	0	./.	3	6	6	9	22	31	22	31	6	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709080737	17	71445763	TTC	T	300	PASS	SDK2	CCDS45769.1	r.?	-	-	Del	intronic	D	71445763	71445767	2	6	262.117	-	-	1	1	-	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	5	0	8	0	24	10	24	10	8	0	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709088446	18	8694878	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	8694878	8694888	1	12	267.1	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	15	6	0	0	./.	3	2	3	2	28	18	28	18	3	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709097165	18	36820985	G	GA	300	PASS	AC105201.1	ENST00000510201	r.?	-	-	Ins	intronic	I	36820985	36820995	1	12	268.304	-	-	9	1	1	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	16	25	17	0	0	./.	3	2	3	2	23	38	23	38	3	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709098245	18	40111986	AAAG	A	749	PASS	-	-	-	-	-	Del	-	D	40111986	40111992	3	54	704.816	-	-	1	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	8	5	9	6	28	14	28	14	9	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709101578	18	50386548	TG	T	840	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50386548	50386550	1	63	756.068	-	-	1	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	8	6	9	6	38	19	38	19	9	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709106966	18	65287521	G	GT	300	PASS	AC114689.1	ENST00000500778	r.?	-	-	Ins	intronic	I	65287521	65287528	1	12	268.304	-	-	6	1	1	AC114689.1|ENST00000500778|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC114689.1|ENST00000500778|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	4	4	15	29	15	29	4	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709111353	18	76877937	A	AT	540	PASS	ATP9B	CCDS12014.1	r.?	-	-	Ins	intronic	I	76877937	76877944	1	30	482.948	-	-	6	1	1	ATP9B|CCDS12014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP9B|CCDS12014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	4	8	5	29	16	29	16	8	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709112555	19	2190103	C	CG	360	PASS	DOT1L	CCDS42460.1	r.?	-	-	Ins	intronic	I	2190103	2190108	1	15	314.462	-	-	4	1	1	DOT1L|CCDS42460.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOT1L|CCDS42460.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	4	4	4	15	14	15	14	4	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709113547	19	4457790	AT	A	327	PASS	UBXN6	CCDS12129.1	r.?	-	-	Del	upstream	D	4457790	4457793	1	18	378.412	-	-	2	1	-	UBXN6|CCDS12129.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	UBXN6|CCDS12129.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	3	7	3	0	0	./.	2	5	4	5	10	13	10	13	4	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709115965	19	9383211	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	9383211	9383219	1	10	268.574	-	-	7	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	4	1	8	5	18	24	19	25	8	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709119826	19	17524538	AAAC	A	269	PASS	-	-	-	-	-	Del	-	D	17524538	17524551	3	12	270.38	-	-	4	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	2	3	5	7	14	24	14	24	5	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709120249	19	18383249	G	GT	746	PASS	KIAA1683	CCDS46017.1	r.?	-	-	Ins	intronic	I	18383249	18383256	1	50	697.69	-	-	6	1	1	KIAA1683|CCDS46017.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA1683|CCDS46017.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	9	4	10	18	20	18	20	4	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709128836	19	41237298	TCACAGTCTGTGGGAAA	T	319	PASS	ITPKC	CCDS12563.1	r.?	-	-	Del	intronic	D	41237298	41237315	16	36	597.485	-	-	1	1	1	ITPKC|CCDS12563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPKC|CCDS12563.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	3	8	3	7	22	20	22	21	3	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709137154	2	366535	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	366535	366542	1	12	265.393	-	-	6	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	3	2	7	4	38	17	39	17	7	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709137583	2	1651023	G	GA	720	PASS	PXDN	CCDS46221.1	r.?	-	-	Ins	intronic	I	1651023	1651032	1	49	638.388	-	-	8	1	1	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDN|CCDS46221.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	19	7	19	0	0	./.	6	6	8	10	28	33	29	33	8	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709138424	2	4471790	CG	C	600	PASS	-	-	-	-	-	Del	-	D	4471790	4471793	1	20	538.011	-	-	2	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	9	1	14	2	25	18	25	18	14	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709148671	2	33587209	CACTT	C	629	PASS	LTBP1	CCDS33177.1	r.?	-	-	Del	intronic	D	33587209	33587214	4	42	591.812	-	-	1	1	1	LTBP1|CCDS33177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LTBP1|CCDS33177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	5	6	5	8	25	27	25	27	5	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709150989	2	39482824	A	AT	480	PASS	MAP4K3	CCDS1803.1	r.?	-	-	Ins	intronic	I	39482824	39482831	1	24	425.592	-	-	6	1	1	MAP4K3|CCDS1803.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAP4K3|CCDS1803.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	3	6	9	31	25	31	25	6	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709157345	2	56974202	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	56974202	56974222	2	10	269.005	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	4	1	26	24	26	24	4	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709157819	2	58354315	ATCCAAGTCTTGTGTTATTTCTTTC	A	377	PASS	VRK2	CCDS1859.1	r.?	-	-	Del	intronic	D	58354315	58354340	24	56	699.414	-	-	1	1	1	VRK2|CCDS1859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VRK2|CCDS1859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	6	7	6	7	24	28	24	28	6	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709159094	2	62070468	GCCAGACTGGTCTTGAATTCTTGACCTCAGGTGATCTACTCGCCTCGGCCTCTCAAAGTGCTGGGATTATGGGCATGAGCCACCGTGCCCTACCCTTTCAGTTCTTTTAATTGAAGCAACTAAAGAGATAAAACCCCATTTTCTCCATAAATATAAAATTTTTATTATGTTCTCAGTTGAGAAACAGTTGAAATTATTTATGATACTATGCATAAAAGGCTGCCAA	G	261	PASS	FAM161A	CCDS42687.2	r.?	-	-	Del	intronic	D	62070468	62070697	225	28	483.608	-	-	1	1	1	FAM161A|CCDS42687.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM161A|CCDS42687.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	6	19	6	0	0	./.	3	6	0	0	19	8	22	14	3	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709164481	2	78635183	TGCCTGGGGGCAGG	T	261	PASS	-	-	-	-	-	Del	-	D	78635183	78635197	13	24	484.21	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	7	2	9	3	24	18	24	18	9	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709164754	2	79420352	G	GT	480	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	79420352	79420359	1	16	423.786	-	-	6	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	7	1	8	4	30	20	31	20	8	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709172499	2	104452669	TA	T	472	PASS	-	-	-	-	-	Del	-	D	104452669	104452673	1	24	430.409	-	-	3	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	5	3	7	5	17	19	17	19	7	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709173557	2	107591772	TA	T	600	PASS	-	-	-	-	-	Del	-	D	107591772	107591782	1	35	538.011	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	4	7	6	24	26	24	26	7	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709191578	2	160585559	CAAG	C	598	PASS	MARCH7	CCDS2210.1	r.149_151delAAG	c.27_29delAAG	p.R11delR	Del	inframe	D	160585559	160585568	3	42	591.812	-	-	2	1	1	MARCH7|CCDS2210.1|r.149_151delAAG|c.27_29delAAG|p.R11delR|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	MARCH7|CCDS2210.1|r.149_151delAAG|c.27_29delAAG|p.R11delR|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	9	10	9	10	0	0	./.	6	5	8	9	22	23	22	23	8	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709200084	2	185122755	TA	T	600	PASS	-	-	-	-	-	Del	-	D	185122755	185122764	1	35	538.011	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	4	8	5	27	23	27	23	8	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709200192	2	185417867	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	185417867	185417876	1	6	265.995	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	0	7	0	26	18	27	18	7	0	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709200270	2	185920962	CA	C	660	PASS	-	-	-	-	-	Del	-	D	185920962	185920968	1	30	590.005	-	-	5	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	2	9	5	10	20	21	20	21	5	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709217089	2	232505692	TG	T	300	PASS	-	-	-	-	-	Del	-	D	232505692	232505696	1	12	265.995	-	-	3	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	2	3	2	3	17	19	17	19	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709222495	20	4413207	CA	C	360	PASS	-	-	-	-	-	Del	-	D	4413207	4413211	1	15	326.319	-	-	3	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	5	3	20	21	20	21	5	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709224981	20	11204491	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	11204491	11204499	1	20	376.491	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	4	5	9	37	33	37	33	5	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709234169	20	37159414	ATTTTTAG	A	493	PASS	RALGAPB	CCDS13305.1	r.?	-	-	Del	intronic	D	37159414	37159423	7	88	920.958	-	-	1	1	1	RALGAPB|CCDS13305.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGAPB|CCDS13305.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	10	7	12	8	26	25	26	25	12	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709243578	21	9510972	GAT	G	420	PASS	-	-	-	-	-	Del	-	D	9510972	9510976	2	21	435.177	-	-	1	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	6	2	10	3	29	40	29	40	10	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709246626	21	11129572	T	TG	266	PASS	-	-	-	-	-	Ins	-	I	11129572	11129573	1	11	521.093	-	-	0	1	1	-	-	./.	0	0	0	0	96	136	98	140	0	0	./.	0	10	0	1	148	240	151	249	0	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709259474	21	44944920	CCGATTTCTT	C	377	PASS	HSF2BP	CCDS13697.1	r.?	-	-	Del	downstream	D	44944920	44944930	9	56	707.162	-	-	1	1	1	HSF2BP|CCDS13697.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HSF2BP|CCDS13697.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	10	17	10	0	0	./.	7	6	9	9	23	23	23	23	9	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709263499	22	22676647	A	AC	432	PASS	-	-	-	-	-	Ins	-	I	22676647	22676653	1	21	432.231	-	-	5	1	1	-	-	./.	0	0	0	0	11	14	11	15	0	0	./.	6	2	10	4	30	21	31	21	10	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709268084	22	34342944	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	34342944	34342945	1	12	268.338	-	-	0	1	1	-	-	./.	0	0	0	0	11	9	11	10	0	0	./.	3	2	5	2	26	24	26	24	5	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709274661	22	50720935	C	CGG	480	PASS	PLXNB2	CCDS43035.1	r.?	-	-	Ins	intronic	I	50720935	50720940	2	21	422.598	-	-	4	1	1	PLXNB2|CCDS43035.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXNB2|CCDS43035.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	2	6	2	6	15	29	15	29	2	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709276984	3	5535782	AAG	A	687	PASS	-	-	-	-	-	Del	-	D	5535782	5535786	2	54	698.897	-	-	1	1	1	-	-	./.	0	0	0	0	10	5	11	6	0	0	./.	5	8	10	10	12	15	13	19	10	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709284812	3	28888280	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	28888280	28888284	2	12	269.501	-	-	1	1	-	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	6	3	16	14	16	14	6	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709285240	3	30146730	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	30146730	30146733	1	7	319.789	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	6	0	9	1	28	21	28	21	9	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709286612	3	33751823	T	TA	720	PASS	CLASP2	ENST00000307312	r.?	-	-	Ins	intronic	I	33751823	33751830	1	48	639.578	-	-	6	1	1	CLASP2|ENST00000307312|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CLASP2|ENST00000307312|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	5	7	8	15	23	33	25	33	8	15	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709290597	3	46003822	TGG	T	420	PASS	FYCO1	CCDS2734.1	r.3536_3537delCC	c.3330_3331delCC	p.C1110fs*1	Del	frameshift	D	46003822	46003825	2	20	377.302	-	-	2	1	1	FYCO1|CCDS2734.1|r.3536_3537delCC|c.3330_3331delCC|p.C1110fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FYCO1|CCDS2734.1|r.3536_3537delCC|c.3330_3331delCC|p.C1110fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	17	5	17	0	0	./.	4	3	6	6	16	15	16	15	6	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709292927	3	52368642	T	TA	720	PASS	DNAH1	CCDS46842.1	r.?	-	-	Ins	intronic	I	52368642	52368652	1	49	639.578	-	-	9	1	1	DNAH1|CCDS46842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH1|CCDS46842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	6	6	9	8	24	23	24	23	9	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709302415	3	76363469	C	CT	540	PASS	ROBO2	ENST00000487694	r.?	-	-	Ins	intronic	I	76363469	76363472	1	30	479.684	-	-	2	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	8	5	30	17	30	18	8	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709320166	3	131963159	CA	C	480	PASS	CPNE4	ENST00000512055	r.?	-	-	Del	intronic	D	131963159	131963164	1	25	431.202	-	-	4	1	1	CPNE4|ENST00000512055|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CPNE4|ENST00000512055|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	4	4	7	4	25	23	25	23	7	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709325424	3	148475939	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	148475939	148475949	1	12	266.491	-	-	9	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	2	3	31	34	32	34	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709327537	3	154078389	G	GA	540	PASS	GPR149	CCDS43162.1	r.?	-	-	Ins	intronic	I	154078389	154078397	1	28	479.684	-	-	7	1	1	GPR149|CCDS43162.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR149|CCDS43162.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	6	5	7	22	21	22	21	5	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709329758	3	162039672	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	162039672	162039680	1	42	586.28	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	6	5	10	5	32	22	32	22	10	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709330395	3	163418174	CT	C	720	PASS	-	-	-	-	-	Del	-	D	163418174	163418183	1	45	646.803	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	8	5	10	20	31	20	31	5	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709330608	3	163890924	A	AT	547	PASS	MIR1263	ENST00000408324	r.?	-	-	Ins	upstream	I	163890924	163890931	1	32	532.982	-	-	6	1	1	MIR1263|ENST00000408324|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	MIR1263|ENST00000408324|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	./.	0	0	0	0	23	18	24	18	0	0	./.	7	3	7	5	25	33	25	33	7	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709333496	3	172704463	A	AG	480	PASS	SPATA16	CCDS3221.1	r.?	-	-	Ins	intronic	I	172704463	172704472	1	21	426.385	-	-	8	1	1	SPATA16|CCDS3221.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPATA16|CCDS3221.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	16	12	0	0	./.	6	2	8	2	29	28	29	28	8	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709335077	3	177047465	TA	T	360	PASS	-	-	-	-	-	Del	-	D	177047465	177047472	1	15	323.401	-	-	6	1	-	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	2	4	3	7	15	17	15	17	3	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709335838	3	179206964	TTTACC	T	269	PASS	-	-	-	-	-	Del	-	D	179206964	179206970	5	6	269.501	-	-	1	1	1	-	-	./.	0	0	0	0	14	1	14	1	0	0	./.	5	0	5	0	23	0	23	0	5	0	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709339601	3	189947807	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	189947807	189947825	2	6	265.287	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	0	5	0	5	24	21	24	21	0	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709348992	4	19375758	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	19375758	19375762	1	10	266.438	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	1	6	1	23	23	25	24	6	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709358387	4	44025951	CA	C	420	PASS	-	-	-	-	-	Del	-	D	44025951	44025961	1	18	377.227	-	-	9	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	5	2	5	3	18	22	18	22	5	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709363748	4	60381567	G	GA	538	PASS	-	-	-	-	-	Ins	-	I	60381567	60381574	1	36	532.875	-	-	6	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	5	5	6	6	23	23	24	23	6	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709370340	4	78396353	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	78396353	78396363	1	21	426.3	-	-	9	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	2	8	6	34	32	35	32	8	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709371715	4	82640132	AT	A	780	PASS	-	-	-	-	-	Del	-	D	82640132	82640134	1	56	699.361	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	7	6	10	7	30	31	30	31	10	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709375721	4	94150312	G	GA	269	PASS	GRID2	CCDS3637.1	r.?	-	-	Ins	intronic	I	94150312	94150322	1	12	262.825	-	-	9	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	2	3	1	1	29	34	29	34	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709376788	4	97347814	AG	A	300	PASS	-	-	-	-	-	Del	-	D	97347814	97347816	1	10	262.223	-	-	1	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	1	8	1	26	16	26	16	8	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709379564	4	106453288	CA	C	960	PASS	-	-	-	-	-	Del	-	D	106453288	106453290	1	80	862.233	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	7	9	8	11	19	22	19	22	8	11	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709380660	4	110212184	C	CT	1080	PASS	COL25A1	CCDS43258.1	r.?	-	-	Ins	intronic	I	110212184	110212186	1	99	959.176	-	-	1	1	1	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	8	10	8	12	23	34	23	34	8	12	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709381082	4	111279899	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	111279899	111279901	1	12	254.999	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	5	2	32	28	32	28	5	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709382743	4	116175032	GAC	G	314	PASS	-	-	-	-	-	Del	-	D	116175032	116175038	2	18	377.227	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	5	3	5	20	23	20	23	3	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709387746	4	129560230	CAG	C	540	PASS	-	-	-	-	-	Del	-	D	129560230	129560236	2	30	485.006	-	-	2	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	5	4	8	20	20	20	20	4	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709398188	4	161692765	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	161692765	161692772	1	15	319.725	-	-	6	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	4	2	5	3	14	17	14	18	5	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709417644	5	23474846	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	23474846	23474851	1	63	746.691	-	-	4	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	6	8	7	11	28	33	28	34	7	11	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709419026	5	27212539	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	27212539	27212544	1	28	480.016	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	6	6	6	24	34	24	34	6	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709419541	5	28703359	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	28703359	28703367	1	54	693.356	-	-	7	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	5	8	6	14	35	34	35	34	6	14	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709429370	5	59531871	CAAATT	C	480	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59531871	59531881	5	24	431.497	-	-	1	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	5	4	6	26	20	26	20	4	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709433544	5	72964795	G	GT	720	PASS	ENSG00000214944	CCDS47231.1	r.?	-	-	Ins	intronic	I	72964795	72964805	1	48	640.021	-	-	9	1	1	ENSG00000214944|CCDS47231.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000214944|CCDS47231.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	7	5	9	5	42	19	42	20	9	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709438562	5	85794903	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	85794903	85794910	1	50	693.356	-	-	6	1	1	-	-	./.	0	0	0	0	13	23	13	24	0	0	./.	9	4	9	10	39	23	39	28	9	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709442597	5	99298492	TA	T	540	PASS	-	-	-	-	-	Del	-	D	99298492	99298496	1	24	485.434	-	-	3	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	2	7	2	8	14	25	14	25	2	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709446548	5	111933396	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	111933396	111933402	1	21	425.476	-	-	5	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	2	6	4	8	20	30	21	30	4	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709452174	5	129793966	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	129793966	129793974	1	36	533.351	-	-	7	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	5	5	6	5	28	21	29	22	6	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709455007	5	138872477	GA	G	420	PASS	-	-	-	-	-	Del	-	D	138872477	138872481	1	20	377.56	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	8	3	25	16	25	16	8	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709455389	5	139949134	T	TG	480	PASS	SLC35A4	CCDS4231.1	r.?	-	-	Ins	downstream	I	139949134	139949144	1	21	417.048	-	-	9	1	1	SLC35A4|CCDS4231.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	APBB3|CCDS4229.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	9	9	9	0	0	./.	6	2	6	8	45	34	46	35	6	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709464714	5	164214541	AC	A	300	PASS	-	-	-	-	-	Del	-	D	164214541	164214546	1	12	267.879	-	-	4	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	4	3	19	28	19	28	4	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709469491	5	175751002	A	AT	269	PASS	C5orf25	CCDS4398.2	r.?	-	-	Ins	intronic	I	175751002	175751003	1	10	255.236	-	-	0	1	-	C5orf25|CCDS4398.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C5orf25|CCDS4398.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	1	4	0	0	23	39	23	39	1	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709469737	5	176238614	T	TTG	540	PASS	UNC5A	CCDS34299.1	r.?	-	-	Ins	intronic	I	176238614	176238615	2	28	472.791	-	-	0	1	1	UNC5A|CCDS34299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNC5A|CCDS34299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	6	0	0	19	26	19	26	3	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709473600	6	4383353	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	4383353	4383355	1	12	266.124	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	3	3	16	21	16	21	3	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709480872	6	21616432	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	21616432	21616436	2	10	269.736	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	4	1	5	1	18	12	18	12	5	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709486185	6	33004618	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	33004618	33004628	1	66	800.178	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	17	0	0	./.	10	5	12	8	27	27	27	27	12	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709497275	6	64611202	TAGAC	T	418	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	64611202	64611210	4	21	431.578	-	-	1	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	6	2	9	8	22	28	22	28	9	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709497939	6	66569708	T	TA	817	PASS	-	-	-	-	-	Ins	-	I	66569708	66569710	1	55	746.833	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	10	6	11	19	31	19	31	6	11	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709505260	6	87295704	C	CTA	420	PASS	-	-	-	-	-	Ins	-	I	87295704	87295717	2	20	369.202	-	-	6	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	3	5	23	27	23	27	3	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709505394	6	87689429	C	CA	449	PASS	HTR1E	CCDS5006.1	r.?	-	-	Ins	intronic	I	87689429	87689438	1	24	423.751	-	-	8	1	1	HTR1E|CCDS5006.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HTR1E|CCDS5006.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	3	5	6	6	19	21	19	22	6	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709506109	6	90015045	G	GA	540	PASS	GABRR2	CCDS5020.2	r.?	-	-	Ins	intronic	I	90015045	90015053	1	30	480.107	-	-	7	1	1	GABRR2|CCDS5020.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABRR2|CCDS5020.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	4	5	8	8	30	35	30	35	8	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709506571	6	91344223	AT	A	540	PASS	-	-	-	-	-	Del	-	D	91344223	91344231	1	30	485.526	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	4	7	6	21	21	21	21	7	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709512288	6	108572839	C	CA	660	PASS	SNX3	CCDS5064.1	r.?	-	-	Ins	intronic	I	108572839	108572847	1	42	584.389	-	-	7	1	1	SNX3|CCDS5064.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNX3|CCDS5064.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	6	5	6	8	26	32	26	32	6	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709516046	6	119142113	C	CT	269	PASS	MCM9	ENST00000316316	r.?	-	-	Ins	intronic	I	119142113	119142123	1	25	426.762	-	-	9	1	1	MCM9|ENST00000316316|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCM9|ENST00000316316|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	11	0	0	./.	4	4	8	4	23	29	23	29	8	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709522007	6	138120522	GAGCTAGCTGGCA	G	290	PASS	-	-	-	-	-	Del	-	D	138120522	138120548	12	27	539.473	-	-	2	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	8	2	8	16	25	16	25	2	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709522060	6	138285035	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	138285035	138285044	1	12	266.726	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	4	2	25	25	26	26	4	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709522145	6	138501727	T	TA	300	PASS	KIAA1244	CCDS5189.2	r.?	-	-	Ins	intronic	I	138501727	138501737	1	12	266.726	-	-	9	1	1	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	3	2	3	2	26	26	26	26	3	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709529089	6	158893609	CTGTGCTATTCAAG	C	559	PASS	TULP4	CCDS34561.1	r.?	-	-	Del	intronic	D	158893609	158893623	13	110	1020.18	-	-	1	1	1	TULP4|CCDS34561.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TULP4|CCDS34561.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	9	10	7	10	20	22	22	22	9	10	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709549915	7	45321451	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	45321451	45321461	1	12	266.877	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	16	0	0	./.	2	3	2	3	33	27	33	27	2	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709556230	7	63517645	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	63517645	63517651	1	7	319.049	-	-	5	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	6	0	8	3	21	21	21	23	8	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709570893	7	103410149	TG	T	720	PASS	RELN	CCDS47680.1	r.?	-	-	Del	intronic	D	103410149	103410153	1	40	647.73	-	-	3	1	1	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	9	3	10	3	32	19	32	19	10	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709575301	7	116980573	AT	A	658	PASS	-	-	-	-	-	Del	-	D	116980573	116980578	1	45	647.73	-	-	4	1	-	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	8	4	12	5	28	29	28	29	12	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709576147	7	119833495	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	119833495	119833505	1	12	266.877	-	-	9	1	1	-	-	./.	0	0	0	0	23	18	24	18	0	0	./.	3	2	3	2	26	29	26	29	3	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709576250	7	120236178	CT	C	300	PASS	KCND2	CCDS5776.1	r.?	-	-	Del	intronic	D	120236178	120236181	1	12	269.888	-	-	2	1	1	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	4	3	30	17	30	17	4	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709578123	7	125458284	AC	A	298	PASS	-	-	-	-	-	Del	-	D	125458284	125458286	1	16	313.028	-	-	1	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	3	3	3	7	23	41	23	41	3	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709578587	7	126833821	TA	T	660	PASS	GRM8	CCDS5794.1	r.?	-	-	Del	intronic	D	126833821	126833824	1	22	592.548	-	-	2	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	10	1	11	3	28	15	28	15	11	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709579980	7	130103496	CT	C	420	PASS	-	-	-	-	-	Del	-	D	130103496	130103501	1	20	377.843	-	-	4	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	4	4	7	24	18	24	18	4	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709586591	7	148799571	AC	A	360	PASS	ZNF398	CCDS47739.1	r.?	-	-	Del	intronic	D	148799571	148799573	1	15	323.865	-	-	1	1	1	ZNF398|CCDS47739.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF398|CCDS47739.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	4	3	4	19	25	19	25	3	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709609535	8	54351013	TTC	T	540	PASS	-	-	-	-	-	Del	-	D	54351013	54351017	2	30	486.395	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	5	5	8	25	25	25	25	5	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709611264	8	59812158	A	AT	600	PASS	TOX	CCDS34897.1	r.?	-	-	Ins	intronic	I	59812158	59812168	1	32	533.214	-	-	9	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	3	7	7	8	23	37	25	37	7	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709613761	8	67934195	C	CT	1020	PASS	LRRC67	CCDS34902.1	r.?	-	-	Ins	intronic	I	67934195	67934204	1	88	908.511	-	-	8	1	1	LRRC67|CCDS34902.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC67|CCDS34902.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	21	18	22	0	0	./.	10	7	15	7	31	19	31	19	15	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709615045	8	71820197	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	71820197	71820204	1	12	267.209	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	12	15	0	0	./.	3	2	7	3	19	20	21	20	7	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709615100	8	72065445	AG	A	389	PASS	-	-	-	-	-	Del	-	D	72065445	72065448	1	20	378.307	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	4	5	4	14	22	14	22	5	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709615936	8	74557482	ACCAAGT	A	348	PASS	STAU2	CCDS6214.1	r.?	-	-	Del	intronic	D	74557482	74557489	6	45	648.526	-	-	1	1	1	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	8	4	9	5	26	27	26	27	9	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709617432	8	79044405	GTATA	G	389	PASS	-	-	-	-	-	Del	-	D	79044405	79044414	4	20	378.307	-	-	4	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	4	6	8	18	31	18	31	6	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709626697	8	107325336	A	AT	300	PASS	OXR1	CCDS47909.1	r.?	-	-	Ins	intronic	I	107325336	107325346	1	10	267.209	-	-	9	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	14	15	0	0	./.	1	4	4	5	23	35	23	35	4	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709628117	8	111473945	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	111473945	111473964	2	10	270.219	-	-	9	1	-	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	1	4	1	4	29	25	29	25	1	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709647077	9	20663228	T	TA	600	PASS	KIAA1797	CCDS34993.1	r.?	-	-	Ins	intronic	I	20663228	20663235	1	36	535.122	-	-	6	1	1	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	5	5	7	17	23	17	23	5	7	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709650046	9	30412995	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	30412995	30413005	1	12	267.561	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	14	14	0	0	./.	3	2	3	3	23	33	23	33	3	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709662589	9	85275549	TAG	T	300	PASS	-	-	-	-	-	Del	-	D	85275549	85275567	2	10	269.367	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	1	4	1	4	24	10	24	10	1	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709671398	9	112308357	CTA	C	960	PASS	-	-	-	-	-	Del	-	D	112308357	112308361	2	80	865.828	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	7	9	7	9	21	26	21	26	7	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709683956	X	8958113	GA	G	480	PASS	-	-	-	-	-	Del	-	D	8958113	8958119	1	24	433.215	-	-	5	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	3	9	5	25	18	25	18	9	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709689473	X	30324504	C	CTA	540	PASS	NR0B1	CCDS14223.1	r.?	-	-	Ins	intronic	I	30324504	30324515	2	24	475.326	-	-	5	1	1	NR0B1|CCDS14223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NR0B1|CCDS14223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	2	7	3	14	12	41	13	41	3	14	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709690177	X	32588647	AG	A	540	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32588647	32588650	1	18	487.367	-	-	2	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	8	1	9	3	21	32	21	32	9	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709695398	X	53257563	AAGCCAT	A	261	PASS	KDM5C	CCDS14351.1	r.?	-	-	Del	upstream	D	53257563	53257570	6	28	487.367	-	-	1	1	1	KDM5C|CCDS14351.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KDM5C|CCDS14351.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	18	10	18	0	0	./.	6	3	6	4	21	25	21	25	6	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709697521	X	66912848	G	GA	540	PASS	AR	CCDS14387.1	r.?	-	-	Ins	intronic	I	66912848	66912855	1	30	481.949	-	-	6	1	1	AR|CCDS14387.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AR|CCDS14387.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	14	0	0	./.	5	4	6	5	33	24	33	25	6	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709699895	X	76458089	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	76458089	76458094	1	54	694.342	-	-	4	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	8	5	9	5	29	21	29	21	9	5	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709700077	X	77220919	AC	A	420	PASS	ATP7A	CCDS35339.1	r.?	-	-	Del	intronic	D	77220919	77220921	1	14	379.063	-	-	1	1	1	ATP7A|CCDS35339.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATP7A|CCDS35339.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	1	6	2	9	20	26	20	26	2	9	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709701397	X	82700785	C	CT	898	PASS	-	-	-	-	-	Ins	-	I	82700785	82700792	1	65	856.196	-	-	6	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	4	12	7	12	29	34	29	34	7	12	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709701482	X	83112961	G	GT	300	PASS	CYLC1	CCDS35341.1	r.?	-	-	Ins	upstream	I	83112961	83112968	1	10	267.749	-	-	6	1	1	CYLC1|CCDS35341.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CYLC1|CCDS35341.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	16	14	16	14	0	0	./.	4	1	4	1	24	40	25	40	4	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709703199	X	88349320	G	GAA	780	PASS	-	-	-	-	-	Ins	-	I	88349320	88349324	2	54	685.913	-	-	3	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	8	7	11	26	29	26	30	7	11	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709703607	X	89683999	C	CG	300	PASS	-	-	-	-	-	Ins	-	I	89683999	89684008	1	6	267.749	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	0	6	1	22	16	22	16	6	1	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709704938	X	94954054	ATTC	A	749	PASS	-	-	-	-	-	Del	-	D	94954054	94954061	3	56	703.975	-	-	2	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	7	6	10	8	32	34	32	34	10	8	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709706341	X	99898545	CT	C	420	PASS	SRPX2	CCDS14471.1	r.?	-	-	Del	upstream	D	99898545	99898548	1	20	374.849	-	-	2	1	1	SRPX2|CCDS14471.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SRPX2|CCDS14471.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	15	9	15	0	0	./.	4	3	5	3	22	17	22	17	5	3	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709707485	X	104396863	T	TA	480	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Ins	intronic	I	104396863	104396871	1	24	428.399	-	-	7	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	5	4	6	22	27	22	27	4	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709710027	X	115221725	T	TA	426	PASS	-	-	-	-	-	Ins	-	I	115221725	115221733	1	25	426.593	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	4	5	6	16	19	17	19	5	6	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709710895	X	118130530	C	CA	269	PASS	LONRF3	CCDS14575.1	r.?	-	-	Ins	intronic	I	118130530	118130538	1	12	267.147	-	-	7	1	1	LONRF3|CCDS14575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LONRF3|CCDS14575.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	13	17	0	0	./.	3	2	3	2	28	33	29	33	3	2	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709716812	X	140039921	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	140039921	140039927	1	36	589.049	-	-	5	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	8	3	11	4	23	15	23	15	11	4	1	1	1	1	1	1	1	1
2662604	PD14436a	PD14436b	2709719207	X	148483044	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	148483044	148483053	1	20	374.849	-	-	8	1	1	-	-	./.	0	0	0	0	21	11	21	12	0	0	./.	3	4	6	5	23	29	23	29	6	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770198430	1	2937914	GTC	G	300	PASS	ACTRT2	CCDS45.1	r.?	-	-	Del	upstream	D	2937914	2937933	2	12	263.592	-	-	9	1	1	ACTRT2|CCDS45.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ACTRT2|CCDS45.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	20	18	20	18	0	0	./.	3	2	3	2	22	17	22	17	3	2	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770208382	1	27023211	ACGCGGGCCCTAGGCCCGCC	A	319	PASS	ARID1A	CCDS285.1	r.689_707del19	c.318_336del19	p.A107fs*1	Del	frameshift	D	27023211	27023232	19	40	576.651	-	-	1	1	1	ARID1A|CCDS285.1|r.689_707del19|c.318_336del19|p.A107fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ARID1A|CCDS285.1|r.689_707del19|c.318_336del19|p.A107fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	18	14	18	0	0	./.	7	4	9	4	22	23	22	23	9	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770210524	1	32775348	TAGGTG	T	329	PASS	HDAC1	CCDS360.1	r.?	-	-	Del	intronic	D	32775348	32775356	5	15	322.09	-	-	1	1	1	HDAC1|CCDS360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC1|CCDS360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	22	27	22	0	0	./.	4	2	5	4	17	12	17	12	5	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770231044	1	92282135	GT	G	420	PASS	TGFBR3	CCDS30770.1	r.?	-	-	Del	intronic	D	92282135	92282137	1	18	375.772	-	-	1	1	1	TGFBR3|CCDS30770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TGFBR3|CCDS30770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	5	2	6	4	20	21	20	21	6	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770235756	1	105322192	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	105322192	105322202	1	36	583.876	-	-	9	1	1	-	-	./.	0	0	0	0	19	29	19	29	0	0	./.	3	8	8	13	22	29	22	29	8	13	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770239287	1	115913058	TC	T	389	PASS	-	-	-	-	-	Del	-	D	115913058	115913061	1	20	375.772	-	-	2	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	3	4	4	16	14	16	14	4	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770254818	1	178753113	TTTAA	T	269	PASS	RALGPS2	CCDS1325.1	r.?	-	-	Del	intronic	D	178753113	178753122	4	6	267.204	-	-	2	1	1	RALGPS2|CCDS1325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGPS2|CCDS1325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	35	23	35	0	0	./.	5	0	7	0	32	24	32	24	7	0	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770279702	1	247084835	ATAAG	A	298	PASS	AHCTF1	CCDS1629.1	r.?	-	-	Del	upstream	D	247084835	247084840	4	15	322.09	-	-	1	1	1	AHCTF1|CCDS1629.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AHCTF1|ENST00000366508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	2	4	5	5	30	23	30	23	5	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770286960	10	14792357	TC	T	600	PASS	FAM107B	CCDS7102.1	r.?	-	-	Del	intronic	D	14792357	14792361	1	27	538.488	-	-	3	1	1	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	23	29	23	0	0	./.	8	2	8	3	30	20	30	20	8	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770301690	10	56468561	TGC	T	360	PASS	PCDH15	CCDS44404.1	r.?	-	-	Del	intronic	D	56468561	56468571	2	15	321.889	-	-	4	1	-	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	22	16	22	0	0	./.	2	4	2	4	11	23	11	23	2	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770335333	11	14518399	TA	T	360	PASS	COPB1	CCDS7815.1	r.?	-	-	Del	intronic	D	14518399	14518403	1	15	323.764	-	-	3	1	1	COPB1|CCDS7815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COPB1|CCDS7815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	26	30	26	0	0	./.	4	2	5	8	17	28	17	28	5	8	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770340064	11	27140663	CTCTT	C	389	PASS	BBOX1	CCDS7862.1	r.?	-	-	Del	intronic	D	27140663	27140671	4	20	377.725	-	-	1	1	1	BBOX1|CCDS7862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BBOX1|CCDS7862.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	28	19	28	0	0	./.	4	3	6	5	16	19	16	19	6	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770365789	11	105924900	AT	A	540	PASS	KBTBD3	CCDS8334.1	r.1155delA	c.515delA	p.H172fs*20	Del	frameshift	D	105924900	105924902	1	30	485.646	-	-	1	1	1	KBTBD3|CCDS8334.1|r.1155delA|c.515delA|p.H172fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	KBTBD3|CCDS8334.1|r.1155delA|c.515delA|p.H172fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	18	24	18	24	0	0	./.	4	5	5	6	14	24	14	24	5	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770404382	12	87400777	TC	T	300	PASS	-	-	-	-	-	Del	-	D	87400777	87400779	1	12	269.795	-	-	1	1	1	-	-	./.	0	0	0	0	20	25	20	25	0	0	./.	3	2	6	6	23	17	23	17	6	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770415530	12	118828920	CT	C	480	PASS	SUDS3	CCDS44993.1	r.500-10delu	c.361-10delt	p.?	Del	splice region	D	118828920	118828925	1	16	431.673	-	-	4	1	1	SUDS3|CCDS44993.1|r.500-10delu|c.361-10delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	SUDS3|CCDS44993.1|r.500-10delu|c.361-10delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	20	27	20	27	0	0	./.	1	7	3	7	16	19	16	19	3	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770416506	12	121083196	TG	T	360	PASS	CABP1	CCDS31913.1	r.?	-	-	Del	intronic	D	121083196	121083198	1	12	323.754	-	-	1	1	1	CABP1|CCDS31913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CABP1|CCDS31913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	5	1	6	1	18	19	18	19	6	1	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770432854	13	49989361	T	TA	300	PASS	CAB39L	CCDS9416.2	r.?	-	-	Ins	intronic	I	49989361	49989368	1	12	266.423	-	-	6	1	1	CAB39L|CCDS9416.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CAB39L|CCDS9416.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	35	25	35	25	0	0	./.	3	2	7	5	23	21	24	21	7	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770437500	13	65890564	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	65890564	65890569	1	40	642.305	-	-	4	1	1	-	-	./.	0	0	0	0	24	29	25	29	0	0	./.	9	3	10	5	23	16	23	17	10	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770448407	13	101311328	CAG	C	600	PASS	TMTC4	CCDS9497.2	r.?	-	-	Del	intronic	D	101311328	101311333	2	35	540.672	-	-	2	1	1	TMTC4|CCDS9497.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC4|CCDS9497.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	20	30	20	0	0	./.	4	6	7	8	16	19	16	19	7	8	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770454071	14	22829145	G	GA	420	PASS	TRAC	ENST00000446346	r.?	-	-	Ins	intronic	I	22829145	22829151	1	20	374.699	-	-	5	1	1	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	4	3	5	3	28	20	28	20	5	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770480706	14	95618495	GAGTT	G	507	PASS	DICER1	CCDS9931.1	r.?	-	-	Del	intronic	D	95618495	95618503	4	36	541.305	-	-	1	1	1	DICER1|CCDS9931.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DICER1|CCDS9931.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	5	5	5	6	19	18	19	18	5	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770492538	15	39965595	GC	G	360	PASS	FSIP1	CCDS10050.1	r.?	-	-	Del	intronic	D	39965595	39965598	1	15	324.968	-	-	2	1	1	FSIP1|CCDS10050.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSIP1|CCDS10050.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	2	4	3	5	26	18	26	18	3	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770493855	15	43174645	AAT	A	300	PASS	TTBK2	CCDS42029.1	r.?	-	-	Del	intronic	D	43174645	43174664	2	12	270.205	-	-	9	1	1	TTBK2|CCDS42029.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TTBK2|CCDS42029.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	31	3	31	0	0	./.	2	3	2	4	14	23	14	23	2	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770514262	15	99329879	TTTG	T	300	PASS	IGF1R	CCDS10378.1	r.?	-	-	Del	intronic	D	99329879	99329895	3	10	269	-	-	5	1	1	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	24	29	24	0	0	./.	4	1	4	1	23	18	23	18	4	1	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770522037	16	13086552	CAG	C	749	PASS	SHISA9	CCDS45417.1	r.?	-	-	Del	intronic	D	13086552	13086557	2	56	700.802	-	-	2	1	1	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	26	14	26	0	0	./.	7	6	8	9	21	30	21	30	8	9	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770526788	16	23992119	AAT	A	300	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	intronic	D	23992119	23992136	2	12	270.234	-	-	8	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	2	3	2	5	20	33	20	33	2	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770535541	16	51642963	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	51642963	51642969	1	48	641.337	-	-	5	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	7	5	9	7	28	17	28	17	9	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770539859	16	62178053	ACTTTT	A	387	PASS	-	-	-	-	-	Del	-	D	62178053	62178063	5	21	431.773	-	-	1	1	1	-	-	./.	0	0	0	0	26	26	26	26	0	0	./.	2	6	4	6	29	27	29	27	4	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770547923	16	80737278	A	AG	720	PASS	CDYL2	CCDS32493.1	r.?	-	-	Ins	intronic	I	80737278	80737281	1	40	641.337	-	-	2	1	1	CDYL2|CCDS32493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDYL2|CCDS32493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	3	9	7	11	26	29	26	30	7	11	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770553886	17	4633773	A	AT	300	PASS	CXCL16	CCDS11052.1	r.?	-	-	Ins	downstream	I	4633773	4633781	1	12	265.242	-	-	7	1	1	CXCL16|CCDS11052.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MED11|CCDS32533.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	4	3	10	14	10	14	4	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770580721	17	74466401	GT	G	300	PASS	RHBDF2	CCDS32743.1	r.?	-	-	Del	downstream	D	74466401	74466403	1	6	270.059	-	-	1	1	1	RHBDF2|CCDS32743.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RHBDF2|CCDS32743.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	21	14	21	0	0	./.	5	0	6	0	19	19	19	19	6	0	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770584464	18	1889600	AT	A	300	PASS	-	-	-	-	-	Del	-	D	1889600	1889602	1	12	270.771	-	-	1	1	1	-	-	./.	0	0	0	0	26	27	26	27	0	0	./.	3	2	6	2	22	17	22	17	6	2	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770591179	18	21941436	TAC	T	360	PASS	OSBPL1A	CCDS11884.1	r.?	-	-	Del	intronic	D	21941436	21941439	2	16	322.518	-	-	1	1	1	OSBPL1A|CCDS11884.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBPL1A|CCDS11884.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	23	22	23	0	0	./.	3	3	5	3	24	19	24	19	5	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770623261	19	28224234	TC	T	540	PASS	AC006504.2	CCDS34162.1	r.?	-	-	Del	intronic	D	28224234	28224238	1	24	487.765	-	-	3	1	1	AC006504.2|CCDS34162.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC006504.2|CCDS34162.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	7	2	7	3	20	12	20	12	7	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770670857	2	100473641	CTAAA	C	300	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100473641	100473657	4	10	268.479	-	-	3	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	23	28	23	0	0	./.	4	1	4	3	23	21	23	21	4	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770673338	2	108675594	AT	A	420	PASS	-	-	-	-	-	Del	-	D	108675594	108675596	1	18	375.87	-	-	1	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	5	2	9	4	30	28	30	28	9	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770675673	2	116353426	GT	G	480	PASS	DPP10	CCDS46400.1	r.?	-	-	Del	intronic	D	116353426	116353433	1	24	427.76	-	-	6	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	45	35	45	35	0	0	./.	5	3	5	4	19	18	19	18	5	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770695384	2	173908757	AG	A	420	PASS	RAPGEF4	CCDS42775.1	r.?	-	-	Del	intronic	D	173908757	173908760	1	20	374.666	-	-	2	1	1	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	4	3	6	4	17	24	17	24	6	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770703776	2	200329813	GTC	G	300	PASS	SATB2	CCDS2327.1	r.17_18delGA	c.?	p.?	Del	5'UTR variant	D	200329813	200329833	2	12	267.275	-	-	9	1	-	SATB2|CCDS2327.1|r.17_18delGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	SATB2|CCDS2327.1|r.17_18delGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	24	17	24	17	0	0	./.	3	2	4	2	25	23	25	23	4	2	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770720965	20	3902121	AC	A	629	PASS	PANK2	CCDS13072.1	r.?	-	-	Del	intronic	D	3902121	3902130	1	30	594.07	-	-	8	1	1	PANK2|CCDS13072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PANK2|CCDS13072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	2	9	3	9	21	25	21	25	3	9	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770724630	20	13456778	TAAAC	T	480	PASS	TASP1	CCDS13116.1	r.?	-	-	Del	intronic	D	13456778	13456794	4	25	433.201	-	-	3	1	-	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	35	19	35	0	0	./.	4	4	5	9	27	30	27	30	5	9	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770725212	20	14906667	GTCTCTTCACA	G	580	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14906667	14906679	10	112	1083.9	-	-	1	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	29	12	29	0	0	./.	7	13	7	13	22	35	22	35	7	13	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770727330	20	20589134	G	GA	300	PASS	RALGAPA2	CCDS46584.1	r.?	-	-	Ins	intronic	I	20589134	20589144	1	6	268.116	-	-	9	1	1	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	34	27	35	0	0	./.	0	5	1	5	27	41	27	41	1	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770775471	3	6977264	TA	T	509	PASS	GRM7	CCDS43042.1	r.?	-	-	Del	intronic	D	6977264	6977266	1	30	484.212	-	-	1	1	1	GRM7|CCDS43042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM7|CCDS43042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	40	24	40	0	0	./.	5	4	9	4	19	23	19	23	9	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770780982	3	23109008	CAG	C	600	PASS	-	-	-	-	-	Del	-	D	23109008	23109012	2	36	538.013	-	-	1	1	1	-	-	./.	0	0	0	0	28	23	28	23	0	0	./.	5	5	7	6	22	22	22	22	7	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770796712	3	69854817	TC	T	300	PASS	MITF	CCDS43106.1	r.?	-	-	Del	intronic	D	69854817	69854819	1	10	269.007	-	-	1	1	1	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	28	12	28	0	0	./.	4	1	7	1	26	18	26	18	7	1	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770802418	3	84574232	AG	A	890	PASS	-	-	-	-	-	Del	-	D	84574232	84574235	1	77	859.617	-	-	2	1	1	-	-	./.	0	0	0	0	30	25	30	25	0	0	./.	10	6	12	7	28	23	28	23	12	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770806660	3	102199636	TTTAAA	T	358	PASS	ZPLD1	CCDS2947.1	r.?	-	-	Del	downstream	D	102199636	102199642	5	20	376.609	-	-	1	1	1	ZPLD1|CCDS2947.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZPLD1|CCDS2947.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	27	29	27	29	0	0	./.	3	4	4	5	17	20	17	20	4	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770813832	3	122448013	CTA	C	600	PASS	PARP14	CCDS46894.1	r.6242_6243delUA	c.?	p.?	Del	3'UTR variant	D	122448013	122448017	2	32	538.013	-	-	1	1	1	PARP14|CCDS46894.1|r.6242_6243delUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PARP14|CCDS46894.1|r.6242_6243delUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	24	23	24	23	0	0	./.	3	7	3	8	22	26	22	26	3	8	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770817912	3	135228485	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	135228485	135228495	1	18	372.395	-	-	9	1	1	-	-	./.	0	0	0	0	23	23	25	23	0	0	./.	2	5	3	6	17	31	18	31	3	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770821746	3	146501647	GT	G	300	PASS	-	-	-	-	-	Del	-	D	146501647	146501657	1	12	269.007	-	-	9	1	1	-	-	./.	0	0	0	0	26	30	26	30	0	0	./.	3	2	7	2	23	25	23	25	7	2	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770825577	3	158325034	A	AC	300	PASS	MLF1	CCDS46945.1	r.?	-	-	Ins	downstream	I	158325034	158325035	1	10	258.772	-	-	0	1	-	MLF1|CCDS46945.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MLF1|CCDS46945.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	23	19	23	0	0	./.	1	4	1	4	26	8	26	9	1	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770839661	4	888044	G	GCGCAGGGGTGACACCGGGGCCTGCGGGGAA	348	PASS	GAK	CCDS3340.1	r.?	-	-	Ins	intronic	I	888044	888057	30	48	418.944	-	-	0	1	1	GAK|CCDS3340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GAK|CCDS3340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	18	16	0	0	./.	7	5	0	0	24	26	24	29	7	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770857126	4	49193631	AAGTT	A	455	PASS	-	-	-	-	-	Del	-	D	49193631	49193636	4	16	806.046	-	-	1	1	1	-	-	./.	0	0	0	0	36	25	36	25	0	0	./.	15	0	18	0	49	41	49	41	18	0	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770880590	4	120630811	CTTAGA	C	472	PASS	-	-	-	-	-	Del	-	D	120630811	120630823	5	49	644.716	-	-	2	1	1	-	-	./.	0	0	0	0	25	29	25	29	0	0	./.	6	6	6	6	27	26	28	27	7	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770891206	4	152765726	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	152765726	152765733	1	16	319.047	-	-	6	1	1	-	-	./.	0	0	0	0	31	22	31	22	0	0	./.	3	3	4	6	29	23	29	23	4	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770895089	4	163879356	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	163879356	163879366	1	10	264.668	-	-	9	1	1	-	-	./.	0	0	0	0	34	26	34	27	0	0	./.	1	4	2	4	34	24	34	24	2	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770898982	4	176020113	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	176020113	176020120	1	30	478.57	-	-	6	1	1	-	-	./.	0	0	0	0	26	25	26	25	0	0	./.	4	5	4	7	21	14	21	14	4	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770913607	5	20613046	TC	T	360	PASS	-	-	-	-	-	Del	-	D	20613046	20613049	1	12	322.495	-	-	2	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	5	1	8	4	21	24	21	24	8	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770914582	5	23127534	TC	T	540	PASS	-	-	-	-	-	Del	-	D	23127534	23127537	1	28	483.441	-	-	2	1	1	-	-	./.	0	0	0	0	38	23	38	23	0	0	./.	3	6	6	11	19	28	19	28	6	11	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770916524	5	28651090	ATG	A	540	PASS	-	-	-	-	-	Del	-	D	28651090	28651093	2	30	484.645	-	-	1	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	5	4	7	6	18	21	18	21	7	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770923548	5	51495441	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	51495441	51495450	1	15	318.28	-	-	8	1	1	-	-	./.	0	0	0	0	27	26	27	27	0	0	./.	4	2	5	6	26	25	26	25	5	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770949145	5	130520236	C	CT	300	PASS	LYRM7	CCDS4148.1	r.?	-	-	Ins	intronic	I	130520236	130520246	1	10	266.237	-	-	9	1	1	LYRM7|CCDS4148.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LYRM7|CCDS4148.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	25	33	25	0	0	./.	4	1	4	1	25	21	25	21	4	1	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770958430	5	157677238	AT	A	360	PASS	-	-	-	-	-	Del	-	D	157677238	157677245	1	15	323.097	-	-	6	1	1	-	-	./.	0	0	0	0	21	30	21	30	0	0	./.	2	4	3	4	15	19	15	19	3	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2770983271	6	38451620	TCC	T	420	PASS	BTBD9	CCDS47418.1	r.?	-	-	Del	intronic	D	38451620	38451624	2	14	377.19	-	-	3	1	1	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	6	1	6	1	20	12	20	12	6	1	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771005264	6	113734540	TAATA	T	418	PASS	-	-	-	-	-	Del	-	D	113734540	113734549	4	16	431.074	-	-	2	1	1	-	-	./.	0	0	0	0	27	26	27	26	0	0	./.	1	7	1	8	17	21	17	21	1	8	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771028126	7	18661061	CAAATATGGATTTTGAAAAATGGTAATCTT	C	377	PASS	HDAC9	CCDS47554.1	r.?	-	-	Del	intronic	D	18661061	18661093	29	56	700.227	-	-	1	1	1	HDAC9|CCDS47554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC9|CCDS47554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	27	21	27	0	0	./.	6	7	4	4	24	20	26	23	6	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771030692	7	26117747	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	26117747	26117751	1	40	585.877	-	-	3	1	1	-	-	./.	0	0	0	0	14	20	15	20	0	0	./.	4	7	6	9	23	35	24	36	6	9	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771049243	7	75081739	AC	A	346	PASS	POM121C	CCDS47617.1	r.?	-	-	Del	intronic	D	75081739	75081741	1	7	318.365	-	-	1	1	1	POM121C|CCDS47617.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000228720|ENST00000425284|r.1000delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	23	31	23	31	0	0	./.	6	0	7	3	28	23	28	23	7	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771063782	7	118610474	CA	C	420	PASS	-	-	-	-	-	Del	-	D	118610474	118610477	1	20	377.046	-	-	2	1	1	-	-	./.	0	0	0	0	29	25	29	25	0	0	./.	4	3	5	6	18	19	18	19	5	6	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771086330	8	24549811	TA	T	420	PASS	-	-	-	-	-	Del	-	D	24549811	24549821	1	18	377.687	-	-	9	1	1	-	-	./.	0	0	0	0	32	25	32	25	0	0	./.	5	2	6	3	15	12	15	12	6	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771090563	8	37783902	CT	C	360	PASS	-	-	-	-	-	Del	-	D	37783902	37783904	1	15	322.527	-	-	1	1	1	-	-	./.	0	0	0	0	17	28	17	28	0	0	./.	4	2	6	7	27	17	27	17	6	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771096034	8	57079524	GCA	G	900	PASS	PLAG1	CCDS6165.1	r.1280_1281delUG	c.779_780delTG	p.V260fs*16	Del	frameshift	D	57079524	57079529	2	52	809.329	-	-	2	1	1	PLAG1|CCDS6165.1|r.1280_1281delUG|c.779_780delTG|p.V260fs*16|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PLAG1|CCDS6165.1|r.1280_1281delUG|c.779_780delTG|p.V260fs*16|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	18	19	18	19	0	0	./.	12	3	13	3	28	17	28	17	13	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771108971	8	98761759	G	GA	629	PASS	-	-	-	-	-	Ins	-	I	98761759	98761761	1	42	586.885	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	19	0	0	./.	5	6	6	8	15	32	15	33	6	8	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771120588	8	134234475	C	CA	780	PASS	WISP1	CCDS6371.1	r.?	-	-	Ins	intronic	I	134234475	134234477	1	36	693.592	-	-	1	1	1	WISP1|CCDS6371.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WISP1|CCDS6371.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	2	11	3	11	10	31	10	32	3	11	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771127666	9	10051911	CAT	C	270	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	10051911	10051914	2	12	270.019	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	27	25	27	0	0	./.	2	3	4	4	13	21	13	21	4	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771149945	9	94668803	G	GA	360	PASS	ROR2	CCDS6691.1	r.?	-	-	Ins	intronic	I	94668803	94668806	1	16	319.808	-	-	2	1	1	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	21	21	22	0	0	./.	3	3	3	5	9	23	9	23	3	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771152167	9	101271614	G	GA	272	PASS	GABBR2	CCDS6736.1	r.?	-	-	Ins	intronic	I	101271614	101271620	1	24	426.612	-	-	5	1	1	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	35	19	35	20	0	0	./.	5	3	7	5	26	22	27	22	7	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771152888	9	103939428	G	GA	540	PASS	ENSG00000148123	CCDS6751.1	r.?	-	-	Ins	intronic	I	103939428	103939434	1	28	480.616	-	-	5	1	1	ENSG00000148123|CCDS6751.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000148123|CCDS6751.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	20	31	21	0	0	./.	3	6	4	7	20	32	20	32	4	7	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771175989	X	36956071	AC	A	540	PASS	-	-	-	-	-	Del	-	D	36956071	36956073	1	28	486.237	-	-	1	1	1	-	-	./.	0	0	0	0	22	28	22	28	0	0	./.	6	3	6	4	23	17	23	17	6	4	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771196324	X	120938095	GATTACT	G	278	PASS	-	-	-	-	-	Del	-	D	120938095	120938102	6	35	539.059	-	-	1	1	1	-	-	./.	0	0	0	0	28	28	28	28	0	0	./.	4	6	5	8	27	28	27	28	5	8	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771197770	X	125928082	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	125928082	125928089	1	30	480.819	-	-	6	1	1	-	-	./.	0	0	0	0	38	34	39	35	0	0	./.	5	4	7	5	21	21	21	21	7	5	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771200501	X	137202500	TTTCA	T	480	PASS	-	-	-	-	-	Del	-	D	137202500	137202507	4	24	432.211	-	-	1	1	1	-	-	./.	0	0	0	0	27	36	27	36	0	0	./.	5	3	9	3	35	20	35	20	9	3	1	1	1	1	1	1	1	1
2817440	PD14445a	PD14445b	2771204612	X	153154187	TTCTG	T	540	PASS	L1CAM	CCDS14733.1	r.?	-	-	Del	upstream	D	153154187	153154195	4	24	486.237	-	-	1	1	1	L1CAM|CCDS14733.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000196987|ENST00000452593|r.1135_1138delUCUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	19	18	19	18	0	0	./.	2	7	5	7	22	28	22	28	5	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774421133	1	1998100	TC	T	300	PASS	PRKCZ	CCDS37.1	r.?	-	-	Del	intronic	D	1998100	1998104	1	10	266.51	-	-	3	1	1	PRKCZ|CCDS37.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCZ|CCDS37.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	25	23	25	0	0	./.	1	4	2	4	13	20	13	20	2	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774425707	1	15529686	CCTCGCATCCTTCAAATCTCTGCTCAG	C	290	PASS	TMEM51	CCDS154.1	r.?	-	-	Del	intronic	D	15529686	15529713	26	35	536.633	-	-	1	1	1	TMEM51|CCDS154.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMEM51|CCDS154.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	22	33	22	0	0	./.	4	6	3	5	35	32	36	33	4	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774426096	1	16095352	C	CA	1260	PASS	FBLIM1	CCDS163.1	r.?	-	-	Ins	intronic	I	16095352	16095358	1	132	1113.68	-	-	5	1	1	FBLIM1|CCDS163.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBLIM1|CCDS163.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	17	26	17	0	0	./.	10	11	14	16	40	35	40	35	14	16	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774426236	1	16301998	TG	T	660	PASS	ZBTB17	CCDS165.1	r.?	-	-	Del	intronic	D	16301998	16302000	1	42	587.286	-	-	1	1	1	ZBTB17|CCDS165.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZBTB17|CCDS165.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	27	15	27	0	0	./.	6	5	8	8	25	26	25	26	8	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774426239	1	16306759	AG	A	360	PASS	ZBTB17	CCDS165.1	r.?	-	-	Del	upstream	D	16306759	16306761	1	16	321.98	-	-	1	1	1	ZBTB17|CCDS165.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZBTB17|CCDS165.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	22	25	22	25	0	0	./.	3	3	4	4	15	24	15	24	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774444180	1	69870797	GC	G	360	PASS	-	-	-	-	-	Del	-	D	69870797	69870800	1	15	321.98	-	-	2	1	1	-	-	./.	0	0	0	0	28	35	28	35	0	0	./.	4	2	6	2	22	17	22	17	6	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774448575	1	84358402	T	TATATGTGAACACATATATATGAGCAC	327	PASS	TTLL7	CCDS690.2	r.?	-	-	Ins	intronic	I	84358402	84358427	26	20	266.068	-	-	0	1	-	TTLL7|CCDS690.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTLL7|CCDS690.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	41	15	41	16	0	0	./.	3	4	0	0	13	25	13	25	3	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774456561	1	111814679	TTGGTTTTATATTTC	T	278	PASS	-	-	-	-	-	Del	-	D	111814679	111814698	14	35	536.633	-	-	1	1	1	-	-	./.	0	0	0	0	32	33	32	33	0	0	./.	6	4	4	4	25	18	26	18	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774471947	1	173554752	T	TA	360	PASS	SLC9A11	CCDS1308.1	r.?	-	-	Ins	intronic	I	173554752	173554760	1	12	318.368	-	-	7	1	1	SLC9A11|CCDS1308.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC9A11|CCDS1308.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	33	29	33	0	0	./.	1	5	4	5	25	17	25	17	4	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774472604	1	175578536	AT	A	1200	PASS	TNR	CCDS1318.1	r.?	-	-	Del	intronic	D	175578536	175578538	1	121	1073.27	-	-	1	1	1	TNR|CCDS1318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TNR|CCDS1318.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	22	27	22	0	0	./.	10	10	12	13	22	23	22	23	12	13	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774473706	1	179136498	AGC	A	360	PASS	ABL2	CCDS44283.1	r.?	-	-	Del	intronic	D	179136498	179136502	2	15	321.98	-	-	1	1	1	ABL2|CCDS44283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABL2|CCDS44283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	27	23	27	0	0	./.	2	4	2	5	17	19	17	19	2	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774474547	1	180918120	AGGCTGGGCTGCCCAAAGCTCCTACGG	A	493	PASS	KIAA1614	CCDS41442.1	r.7025_7050del26	c.?	p.?	Del	3'UTR variant	D	180918120	180918154	26	90	910.471	-	-	1	1	1	KIAA1614|CCDS41442.1|r.7025_7050del26|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	KIAA1614|CCDS41442.1|r.7025_7050del26|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	21	17	21	17	0	0	./.	9	8	6	6	22	20	25	22	9	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774475566	1	183946449	C	CA	300	PASS	GLT25D2	CCDS1360.1	r.?	-	-	Ins	intronic	I	183946449	183946457	1	12	265.306	-	-	7	1	1	GLT25D2|CCDS1360.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GLT25D2|CCDS1360.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	28	26	28	0	0	./.	2	3	4	3	28	22	28	23	4	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774475973	1	185451032	AT	A	392	PASS	-	-	-	-	-	Del	-	D	185451032	185451037	1	20	375.643	-	-	4	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	4	3	5	7	21	19	21	19	5	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774476471	1	187261496	CA	C	300	PASS	-	-	-	-	-	Del	-	D	187261496	187261498	1	6	267.113	-	-	1	1	1	-	-	./.	0	0	0	0	30	16	30	16	0	0	./.	0	5	1	6	17	15	17	15	1	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774478622	1	193860839	TA	T	780	PASS	-	-	-	-	-	Del	-	D	193860839	193860848	1	56	697.623	-	-	8	1	1	-	-	./.	0	0	0	0	24	25	24	25	0	0	./.	7	6	10	12	25	19	25	19	10	12	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774482662	1	204728548	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	204728548	204728558	1	18	367.817	-	-	9	1	1	-	-	./.	0	0	0	0	25	34	26	34	0	0	./.	5	2	7	3	39	29	41	29	7	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774483275	1	206681703	T	TG	600	PASS	RASSF5	CCDS30998.1	r.?	-	-	Ins	intronic	I	206681703	206681710	1	35	519.174	-	-	6	1	1	RASSF5|CCDS30998.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RASSF5|CCDS30998.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	12	21	13	0	0	./.	6	4	6	4	36	37	38	37	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774494944	1	239469802	TGATA	T	300	PASS	-	-	-	-	-	Del	-	D	239469802	239469808	4	12	268.317	-	-	1	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	3	2	4	2	18	20	18	20	4	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774495918	1	241928323	C	CA	300	PASS	WDR64	ENST00000366552	r.?	-	-	Ins	intronic	I	241928323	241928332	1	10	265.306	-	-	8	1	1	WDR64|ENST00000366552|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR64|ENST00000366552|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	37	22	38	22	0	0	./.	4	1	5	3	20	13	21	13	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774501430	10	5878152	CCCCTG	C	420	PASS	GDI2	ENST00000380127	r.?	-	-	Del	intronic	D	5878152	5878158	5	14	375.087	-	-	1	1	1	GDI2|ENST00000380127|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GDI2|ENST00000380127|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	1	6	1	6	22	38	22	38	1	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774502554	10	8111499	A	AGGAG	540	PASS	GATA3	CCDS31143.1	r.1556_1557insggag	c.988_989insGGAG	p.N332fs*22	Ins	frameshift	I	8111499	8111505	4	28	462.903	-	-	1	1	1	GATA3|CCDS31143.1|r.1556_1557insggag|c.988_989insGGAG|p.N332fs*22|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	GATA3|CCDS31143.1|r.1556_1557insggag|c.988_989insGGAG|p.N332fs*22|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	21	32	21	33	0	0	./.	3	6	3	7	24	38	24	39	3	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774504985	10	13321484	AT	A	1260	PASS	PHYH	CCDS41489.1	r.?	-	-	Del	intronic	D	13321484	13321486	1	132	1127.67	-	-	1	1	1	PHYH|CCDS41489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHYH|CCDS41489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	21	31	21	0	0	./.	10	11	12	15	33	25	33	25	12	15	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774506403	10	16437513	AT	A	300	PASS	-	-	-	-	-	Del	-	D	16437513	16437523	1	10	269.209	-	-	9	1	1	-	-	./.	0	0	0	0	38	30	38	30	0	0	./.	4	1	5	1	21	16	21	16	5	1	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774507958	10	20046153	CA	C	480	PASS	-	-	-	-	-	Del	-	D	20046153	20046157	1	24	430.735	-	-	3	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	3	5	6	10	19	28	19	28	6	10	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774511754	10	28974943	C	CA	360	PASS	BAMBI	CCDS7162.1	r.?	-	-	Ins	downstream	I	28974943	28974947	1	15	319.439	-	-	3	1	1	BAMBI|CCDS7162.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	BAMBI|CCDS7162.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	22	19	22	19	0	0	./.	4	2	5	4	21	28	21	29	5	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774516922	10	42523935	TAAA	T	596	PASS	-	-	-	-	-	Del	-	D	42523935	42523941	3	48	642.49	-	-	5	1	1	-	-	./.	0	0	0	0	32	28	32	28	0	0	./.	5	7	8	7	30	16	30	16	8	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774525206	10	69314964	CT	C	370	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	69314964	69314969	1	18	376.893	-	-	4	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	34	26	34	0	0	./.	5	2	6	3	18	18	18	18	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774527823	10	77187793	TAAG	T	449	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	upstream	D	77187793	77187797	3	21	430.735	-	-	1	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C10orf11|ENST00000354343|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	25	23	25	23	0	0	./.	6	2	6	2	22	8	22	8	6	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774527833	10	77246403	T	TG	300	PASS	C10orf11	ENST00000354343	r.?	-	-	Ins	intronic	I	77246403	77246412	1	10	266.199	-	-	8	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	18	27	18	0	0	./.	4	1	8	5	22	10	22	10	8	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774542483	10	127963406	AT	A	360	PASS	ADAM12	CCDS7653.1	r.?	-	-	Del	intronic	D	127963406	127963410	1	12	323.051	-	-	3	1	1	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM12|CCDS7653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	25	27	25	0	0	./.	5	1	5	1	16	13	16	13	5	1	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774557541	11	35597267	CA	C	480	PASS	-	-	-	-	-	Del	-	D	35597267	35597273	1	24	429.062	-	-	5	1	1	-	-	./.	0	0	0	0	23	36	23	36	0	0	./.	3	5	6	8	22	41	22	41	6	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774563268	11	51456786	GTT	G	360	PASS	-	-	-	-	-	Del	-	D	51456786	51456790	2	15	323.603	-	-	3	1	1	-	-	./.	0	0	0	0	24	21	24	21	0	0	./.	4	2	4	2	16	20	16	20	4	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774564285	11	57707462	AC	A	600	PASS	-	-	-	-	-	Del	-	D	57707462	57707464	1	20	539.338	-	-	1	1	1	-	-	./.	0	0	0	0	22	27	22	27	0	0	./.	9	1	10	4	27	24	27	24	10	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774574496	11	88915482	ACT	A	420	PASS	TYR	CCDS8284.1	r.?	-	-	Del	intronic	D	88915482	88915487	2	18	377.536	-	-	2	1	1	TYR|CCDS8284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TYR|CCDS8284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	18	33	18	0	0	./.	2	5	4	7	41	38	41	38	4	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774580917	11	110256367	CT	C	637	PASS	-	-	-	-	-	Del	-	D	110256367	110256375	1	54	701.139	-	-	7	1	1	-	-	./.	0	0	0	0	37	34	37	34	0	0	./.	5	8	7	10	17	17	17	17	7	10	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774583813	11	119825908	AG	A	480	PASS	-	-	-	-	-	Del	-	D	119825908	119825911	1	21	431.47	-	-	2	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	2	6	4	7	13	15	13	15	4	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774584514	11	122705546	A	AT	420	PASS	CRTAM	CCDS8437.1	r.?	-	-	Ins	upstream	I	122705546	122705555	1	20	372.72	-	-	8	1	1	CRTAM|CCDS8437.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CRTAM|CCDS8437.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	28	23	28	23	0	0	./.	4	3	6	7	17	19	18	19	6	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774586178	11	127900204	TG	T	1080	PASS	-	-	-	-	-	Del	-	D	127900204	127900207	1	99	970.206	-	-	2	1	1	-	-	./.	0	0	0	0	22	44	22	44	0	0	./.	10	8	12	9	13	11	13	11	12	9	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774594144	12	16636557	AG	A	360	PASS	-	-	-	-	-	Del	-	D	16636557	16636559	1	15	323.686	-	-	1	1	1	-	-	./.	0	0	0	0	25	34	25	34	0	0	./.	2	4	6	4	15	16	15	16	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774594693	12	18779678	TC	T	300	PASS	PIK3C2G	CCDS44839.1	r.?	-	-	Del	intronic	D	18779678	18779681	1	12	269.738	-	-	2	1	1	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	53	33	53	33	0	0	./.	3	2	3	2	20	12	20	12	3	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774598482	12	29166508	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	29166508	29166510	1	16	320.073	-	-	1	1	1	-	-	./.	0	0	0	0	16	27	16	27	0	0	./.	3	3	4	4	14	14	14	14	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774601202	12	39397289	TAA	T	660	PASS	-	-	-	-	-	Del	-	D	39397289	39397294	2	40	593.424	-	-	4	1	1	-	-	./.	0	0	0	0	26	34	26	34	0	0	./.	4	7	6	9	15	19	15	19	6	9	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774606260	12	55337882	G	GT	264	PASS	-	-	-	-	-	Ins	-	I	55337882	55337884	1	12	266.728	-	-	1	1	1	-	-	./.	0	0	0	0	22	29	22	29	0	0	./.	2	3	5	5	26	27	26	28	5	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774606903	12	57236343	AT	A	300	PASS	-	-	-	-	-	Del	-	D	57236343	57236353	1	12	269.738	-	-	9	1	1	-	-	./.	0	0	0	0	30	43	30	43	0	0	./.	2	3	5	3	19	20	19	20	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774612814	12	76327620	TA	T	300	PASS	-	-	-	-	-	Del	-	D	76327620	76327629	1	10	269.738	-	-	8	1	1	-	-	./.	0	0	0	0	25	20	25	20	0	0	./.	4	1	4	2	15	12	15	12	4	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774620721	12	102125748	G	GT	300	PASS	CHPT1	CCDS9086.1	r.?	-	-	Ins	downstream	I	102125748	102125752	1	12	266.728	-	-	3	1	1	CHPT1|CCDS9086.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SYCP3|CCDS9087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	27	25	27	0	0	./.	3	2	7	3	27	16	27	16	7	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774627783	12	122942223	TGAAAAGGAAGTTTGGGCACAGACACGTGTGGACACACAGGACA	T	261	PASS	-	-	-	-	-	Del	-	D	122942223	122942269	43	24	485.529	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	2	7	2	3	15	20	15	24	2	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774641447	13	43434722	CCTGTT	C	300	PASS	-	-	-	-	-	Del	-	D	43434722	43434730	5	10	270.286	-	-	1	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	4	1	4	1	19	11	19	11	4	1	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774642710	13	47189529	CTA	C	540	PASS	LRCH1	CCDS31972.1	r.?	-	-	Del	intronic	D	47189529	47189533	2	28	485.913	-	-	1	1	1	LRCH1|CCDS31972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRCH1|CCDS31972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	6	3	6	3	17	18	17	18	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774643923	13	50526196	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	50526196	50526200	1	25	426.437	-	-	3	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	4	4	6	5	15	29	15	29	6	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774644730	13	53178869	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	53178869	53178878	1	36	534.551	-	-	8	1	1	-	-	./.	0	0	0	0	30	31	30	31	0	0	./.	5	5	6	10	19	26	19	26	6	10	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774646476	13	59115623	TC	T	360	PASS	-	-	-	-	-	Del	-	D	59115623	59115625	1	7	324.343	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	0	7	0	21	11	21	11	7	0	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774646688	13	59675895	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	59675895	59675896	1	12	267.276	-	-	0	1	1	-	-	./.	0	0	0	0	22	30	22	31	0	0	./.	3	2	5	2	16	14	16	14	5	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774665460	13	115047374	T	TGGAGGGAGG	276	PASS	UPF3A	CCDS9543.1	r.?	-	-	Ins	intronic	I	115047374	115047404	9	11	444.844	-	-	3	1	1	UPF3A|CCDS9543.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UPF3A|CCDS9543.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	10	0	12	0	51	19	51	19	12	0	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774669643	14	29814925	AC	A	480	PASS	-	-	-	-	-	Del	-	D	29814925	29814933	1	21	433.059	-	-	7	1	1	-	-	./.	0	0	0	0	25	27	25	27	0	0	./.	6	2	6	3	24	24	24	24	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774673768	14	39336909	GC	G	1560	PASS	-	-	-	-	-	Del	-	D	39336909	39336913	1	192	1404.43	-	-	3	1	1	-	-	./.	0	0	0	0	31	27	31	27	0	0	./.	11	15	13	19	24	35	24	35	13	19	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774678661	14	56048540	CTT	C	600	PASS	KTN1	CCDS41957.1	r.?	-	-	Del	intronic	D	56048540	56048543	2	35	541.324	-	-	2	1	1	KTN1|CCDS41957.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KTN1|CCDS41957.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	36	25	36	0	0	./.	6	4	6	4	21	16	21	16	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774687776	14	87805945	TA	T	480	PASS	-	-	-	-	-	Del	-	D	87805945	87805950	1	25	433.059	-	-	4	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	4	4	4	4	11	14	11	14	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774688839	14	91389834	TA	T	480	PASS	RPS6KA5	CCDS9893.1	r.?	-	-	Del	intronic	D	91389834	91389836	1	24	432.457	-	-	1	1	1	RPS6KA5|CCDS9893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS6KA5|CCDS9893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	26	17	26	0	0	./.	5	3	6	4	10	10	10	10	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774690746	14	98154092	TAGAA	T	749	PASS	ENSG00000197176	ENST00000355909	r.?	-	-	Del	upstream	D	98154092	98154100	4	44	700.109	-	-	1	1	1	ENSG00000197176|ENST00000355909|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000197176|ENST00000355909|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	26	33	26	33	0	0	./.	10	3	11	5	19	13	19	13	11	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774692649	14	104738345	GT	G	360	PASS	-	-	-	-	-	Del	-	D	104738345	104738351	1	16	324.794	-	-	5	1	1	-	-	./.	0	0	0	0	32	36	32	36	0	0	./.	3	3	6	3	17	15	17	15	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774703346	15	49513902	G	GTTTGCTGTACA	348	PASS	GALK2	CCDS32236.1	r.?	-	-	Ins	intronic	I	49513902	49513915	11	24	568.181	-	-	1	1	1	GALK2|CCDS32236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALK2|CCDS32236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	61	39	62	40	0	0	./.	11	1	8	0	26	28	29	29	11	1	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774703515	15	50234058	T	TA	300	PASS	ATP8B4	CCDS32238.1	r.?	-	-	Ins	intronic	I	50234058	50234066	1	12	267.848	-	-	7	1	1	ATP8B4|CCDS32238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP8B4|CCDS32238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	24	23	24	0	0	./.	2	3	4	5	15	23	15	23	4	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774714295	15	83940095	GT	G	360	PASS	BNC1	CCDS10324.1	r.?	-	-	Del	intronic	D	83940095	83940099	1	16	325.03	-	-	3	1	1	BNC1|CCDS10324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BNC1|CCDS10324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	40	26	40	26	0	0	./.	3	3	4	3	23	11	23	11	4	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774720618	16	1001968	TG	T	269	PASS	LMF1	CCDS45373.1	r.?	-	-	Del	intronic	D	1001968	1001971	1	12	269.733	-	-	2	1	1	LMF1|CCDS45373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMF1|CCDS45373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	2	28	23	28	23	3	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774726216	16	13239401	A	AC	420	PASS	SHISA9	CCDS45417.1	r.?	-	-	Ins	intronic	I	13239401	13239402	1	20	374.255	-	-	0	1	1	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	29	19	29	0	0	./.	3	4	3	5	24	36	24	36	3	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774726510	16	14098424	GC	G	900	PASS	-	-	-	-	-	Del	-	D	14098424	14098429	1	72	811.005	-	-	4	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	7	8	10	11	25	22	25	22	10	11	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774726764	16	14687114	AAAG	A	300	PASS	PARN	CCDS45419.1	r.?	-	-	Del	intronic	D	14687114	14687120	3	10	269.733	-	-	1	1	1	PARN|CCDS45419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARN|CCDS45419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	27	18	27	0	0	./.	4	1	5	5	16	20	16	20	5	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774727526	16	16694876	CT	C	754	PASS	-	-	-	-	-	Del	-	D	16694876	16694881	1	63	754.53	-	-	4	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	6	8	8	9	21	26	21	26	8	9	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774737719	16	51396983	TA	T	420	PASS	-	-	-	-	-	Del	-	D	51396983	51396988	1	20	378.469	-	-	4	1	1	-	-	./.	0	0	0	0	38	17	38	17	0	0	./.	4	3	5	5	30	16	30	16	5	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774739280	16	56352457	TGGA	T	538	PASS	GNAO1	CCDS10756.1	r.?	-	-	Del	intronic	D	56352457	56352463	3	35	540.67	-	-	1	1	1	GNAO1|CCDS10756.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNAO1|CCDS10756.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	6	4	8	4	24	28	24	28	8	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774756779	17	12215239	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	12215239	12215249	1	16	320.628	-	-	9	1	1	-	-	./.	0	0	0	0	27	43	28	44	0	0	./.	3	3	3	3	15	18	15	18	3	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774770479	17	53288454	GC	G	300	PASS	-	-	-	-	-	Del	-	D	53288454	53288464	1	12	268.394	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	3	2	5	3	36	38	36	38	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774771096	17	54859149	TAATGTGTCTCAGGTTTTCCTAATA	T	290	PASS	-	-	-	-	-	Del	-	D	54859149	54859175	24	35	540.4	-	-	1	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	6	4	6	4	39	40	39	40	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774771628	17	55652507	CT	C	300	PASS	MSI2	CCDS11597.1	r.?	-	-	Del	intronic	D	55652507	55652509	1	6	265.383	-	-	1	1	1	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	0	5	0	8	22	51	22	51	0	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774772524	17	57170792	TC	T	900	PASS	TRIM37	CCDS32694.1	r.?	-	-	Del	intronic	D	57170792	57170794	1	66	810.6	-	-	1	1	1	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	10	5	16	13	59	46	59	46	16	13	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774773358	17	58205860	CT	C	360	PASS	-	-	-	-	-	Del	-	D	58205860	58205862	1	12	318.219	-	-	1	1	1	-	-	./.	0	0	0	0	26	16	26	16	0	0	./.	5	1	6	3	55	42	55	42	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774778746	17	66427886	C	CGGGGACATATGAACACCCGTGGGCAGGCTGAGGGGAGGCCCATGAGAGCCATAACTGCT	290	PASS	WIPI1	CCDS11677.1	r.?	-	-	Ins	intronic	I	66427886	66427909	59	35	162.306	-	-	0	1	1	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WIPI1|CCDS11677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	20	17	0	0	./.	6	4	0	0	86	65	98	73	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774779646	17	68218172	AC	A	540	PASS	-	-	-	-	-	Del	-	D	68218172	68218174	1	28	486.36	-	-	1	1	1	-	-	./.	0	0	0	0	37	26	37	26	0	0	./.	6	3	6	4	24	27	24	27	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774782969	17	74775801	AGGTGATTCACCTGCCTCGGCCTCCCAAAGTGCT	A	261	PASS	MFSD11	CCDS11750.1	r.?	-	-	Del	downstream	D	74775801	74775837	33	24	486.36	-	-	1	1	1	MFSD11|CCDS11750.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	MFSD11|CCDS11750.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	17	10	17	10	0	0	./.	7	2	3	0	31	14	35	16	7	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774787993	18	5918876	CAG	C	600	PASS	-	-	-	-	-	Del	-	D	5918876	5918881	2	35	541.932	-	-	2	1	1	-	-	./.	0	0	0	0	25	21	25	21	0	0	./.	4	6	4	8	12	14	12	14	4	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774790805	18	15096174	G	GT	277	PASS	-	-	-	-	-	Ins	-	I	15096174	15096184	1	18	375.138	-	-	9	1	1	-	-	./.	0	0	0	0	18	38	19	38	0	0	./.	5	2	7	4	21	9	21	9	7	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774818484	19	22406639	CT	C	360	PASS	-	-	-	-	-	Del	-	D	22406639	22406649	1	12	324.965	-	-	9	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	5	1	5	2	11	5	11	5	5	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774819064	19	23795224	AT	A	360	PASS	-	-	-	-	-	Del	-	D	23795224	23795231	1	12	324.965	-	-	6	1	1	-	-	./.	0	0	0	0	24	37	24	37	0	0	./.	1	5	1	5	15	18	15	18	1	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774824937	19	41533496	TCC	T	480	PASS	CYP2A7P1	ENST00000301171	r.130_131delGG	c.130_131delGG	p.G44fs*12	Del	frameshift	D	41533496	41533499	2	24	433.287	-	-	2	1	1	CYP2A7P1|ENST00000301171|r.130_131delGG|c.130_131delGG|p.G44fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CYP2A7P1|ENST00000301171|r.130_131delGG|c.130_131delGG|p.G44fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	18	20	18	20	0	0	./.	5	3	8	3	18	17	18	17	8	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774825319	19	42523499	CA	C	420	PASS	GRIK5	CCDS12595.1	r.?	-	-	Del	intronic	D	42523499	42523501	1	18	375.514	-	-	1	1	1	GRIK5|CCDS12595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK5|CCDS12595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	5	2	6	3	14	23	14	23	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774837988	2	16832221	T	TA	360	PASS	FAM49A	CCDS1688.1	r.?	-	-	Ins	intronic	I	16832221	16832229	1	15	318.606	-	-	7	1	1	FAM49A|CCDS1688.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM49A|CCDS1688.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	24	27	24	0	0	./.	4	2	4	2	18	12	18	12	4	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774839255	2	22096646	TCTA	T	449	PASS	-	-	-	-	-	Del	-	D	22096646	22096652	3	21	429.625	-	-	1	1	1	-	-	./.	0	0	0	0	29	33	29	33	0	0	./.	2	6	2	6	13	19	13	19	2	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774841898	2	29687137	T	TTAGAA	269	PASS	ALK	CCDS33172.1	r.?	-	-	Ins	intronic	I	29687137	29687143	5	10	253.464	-	-	1	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	28	31	30	0	0	./.	4	1	4	1	11	9	11	10	4	1	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774843995	2	35734619	C	CG	360	PASS	-	-	-	-	-	Ins	-	I	35734619	35734622	1	15	318.004	-	-	2	1	1	-	-	./.	0	0	0	0	25	32	25	33	0	0	./.	4	2	5	2	25	14	25	14	5	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774844935	2	38450094	ACACT	A	389	PASS	-	-	-	-	-	Del	-	D	38450094	38450107	4	20	375.922	-	-	3	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	4	3	4	3	14	18	14	18	4	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774851303	2	59741264	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	59741264	59741271	1	12	264.903	-	-	6	1	1	-	-	./.	0	0	0	0	30	32	30	33	0	0	./.	2	3	3	3	18	17	19	17	3	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774857245	2	79065035	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	79065035	79065040	1	12	265.505	-	-	4	1	1	-	-	./.	0	0	0	0	27	34	27	34	0	0	./.	3	2	5	2	23	18	24	18	5	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774863939	2	103595281	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	103595281	103595290	1	12	318.606	-	-	8	1	1	-	-	./.	0	0	0	0	31	29	33	29	0	0	./.	5	1	7	2	19	13	19	14	7	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774866142	2	111718347	TA	T	540	PASS	ACOXL	CCDS42730.1	r.?	-	-	Del	intronic	D	111718347	111718354	1	30	482.726	-	-	6	1	1	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	35	20	35	20	0	0	./.	5	4	8	4	19	15	19	15	8	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774867840	2	117245340	TC	T	300	PASS	-	-	-	-	-	Del	-	D	117245340	117245344	1	12	268.516	-	-	3	1	1	-	-	./.	0	0	0	0	29	23	29	23	0	0	./.	2	3	2	6	17	22	17	22	2	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774867988	2	117840516	CT	C	360	PASS	-	-	-	-	-	Del	-	D	117840516	117840524	1	15	322.219	-	-	7	1	1	-	-	./.	0	0	0	0	29	34	29	34	0	0	./.	2	4	2	5	13	18	13	18	2	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774870726	2	127385872	CA	C	420	PASS	-	-	-	-	-	Del	-	D	127385872	127385878	1	20	375.922	-	-	5	1	1	-	-	./.	0	0	0	0	30	26	30	26	0	0	./.	4	3	5	6	16	17	16	17	5	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774882737	2	166627755	CTTCATTTTATGTAG	C	261	PASS	GALNT3	CCDS2226.1	r.?	-	-	Del	intronic	D	166627755	166627772	14	28	483.328	-	-	1	1	1	GALNT3|CCDS2226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GALNT3|ENST00000412248|r.454+6_454+19delcuacauaaaaugaa|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:intron:deletion:5_prime_UTR_variant:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000188:SO:0000159:SO:0001623:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	29	14	29	14	0	0	./.	6	3	5	3	15	10	16	10	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774887284	2	179697915	TA	T	300	PASS	CCDC141	CCDS2281.1	r.?	-	-	Del	downstream	D	179697915	179697925	1	10	268.516	-	-	9	1	1	CCDC141|CCDS2281.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TTN|ENST00000412264|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	21	28	21	28	0	0	./.	1	4	6	5	23	18	23	18	6	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774890295	2	190844636	C	CA	876	PASS	-	-	-	-	-	Ins	-	I	190844636	190844643	1	66	796.516	-	-	6	1	1	-	-	./.	0	0	0	0	23	38	24	38	0	0	./.	10	5	11	7	25	19	25	19	11	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774891296	2	194267017	GT	G	463	PASS	-	-	-	-	-	Del	-	D	194267017	194267027	1	30	483.328	-	-	9	1	1	-	-	./.	0	0	0	0	34	42	34	42	0	0	./.	4	5	7	7	21	21	21	21	7	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774904449	2	235051150	CT	C	420	PASS	-	-	-	-	-	Del	-	D	235051150	235051153	1	14	374.718	-	-	2	1	1	-	-	./.	0	0	0	0	32	25	32	25	0	0	./.	6	1	6	3	23	14	23	14	6	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774905123	2	236841858	A	AT	360	PASS	AGAP1	CCDS33408.1	r.?	-	-	Ins	intronic	I	236841858	236841866	1	15	318.606	-	-	7	1	1	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	26	30	26	0	0	./.	4	2	4	3	15	25	16	25	4	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774905219	2	237097720	CATGG	C	449	PASS	ASB18	ENST00000330842	r.?	-	-	Del	downstream	D	237097720	237097727	4	21	429.023	-	-	1	1	1	ASB18|ENST00000330842|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000233611|ENST00000415226|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	48	31	48	31	0	0	./.	6	2	6	2	17	10	17	10	6	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774909995	20	8897598	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	8897598	8897608	1	15	321.896	-	-	9	1	1	-	-	./.	0	0	0	0	27	31	27	31	0	0	./.	2	4	4	4	14	14	15	14	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774911176	20	12943039	CA	C	300	PASS	-	-	-	-	-	Del	-	D	12943039	12943042	1	6	271.257	-	-	2	1	1	-	-	./.	0	0	0	0	20	29	20	29	0	0	./.	0	5	1	7	5	15	5	15	1	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774923962	20	49858393	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	49858393	49858401	1	6	265.838	-	-	7	1	-	-	-	./.	0	0	0	0	30	39	31	39	0	0	./.	5	0	5	3	21	25	22	25	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774927953	20	60752187	ATG	A	480	PASS	SS18L1	CCDS13491.1	r.?	-	-	Del	intronic	D	60752187	60752192	2	24	414.143	-	-	2	1	1	SS18L1|CCDS13491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SS18L1|CCDS13491.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	22	24	22	0	0	./.	3	5	3	7	16	30	16	30	3	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774951739	22	35140794	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	35140794	35140801	1	30	485.222	-	-	6	1	1	-	-	./.	0	0	0	0	20	17	20	21	0	0	./.	5	4	5	5	19	16	19	16	5	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774953200	22	39492886	CG	C	420	PASS	APOBEC3H	CCDS13985.1	r.?	-	-	Del	upstream	D	39492886	39492891	1	18	381.609	-	-	4	1	1	APOBEC3H|CCDS13985.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	APOBEC3H|CCDS13985.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	16	16	16	0	0	./.	5	2	5	3	18	9	18	9	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774962164	3	17168644	TC	T	300	PASS	-	-	-	-	-	Del	-	D	17168644	17168646	1	12	269	-	-	1	1	1	-	-	./.	0	0	0	0	25	25	25	25	0	0	./.	2	3	3	4	28	23	28	23	3	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774963195	3	21297287	T	TCACTGCTG	261	PASS	-	-	-	-	-	Ins	-	I	21297287	21297296	8	24	440.851	-	-	1	1	1	-	-	./.	0	0	0	0	36	13	36	13	0	0	./.	2	7	2	6	14	16	14	19	2	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774973552	3	61960687	TC	T	360	PASS	PTPRG	CCDS2895.1	r.?	-	-	Del	intronic	D	61960687	61960689	1	7	322.799	-	-	1	1	1	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	27	31	27	0	0	./.	0	6	1	8	8	25	8	25	1	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774978611	3	78276219	CCTT	C	389	PASS	-	-	-	-	-	Del	-	D	78276219	78276223	3	20	376.599	-	-	1	1	1	-	-	./.	0	0	0	0	30	22	30	22	0	0	./.	4	3	6	4	15	11	15	11	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774978754	3	79035547	C	CT	360	PASS	ROBO1	CCDS46872.1	r.?	-	-	Ins	intronic	I	79035547	79035557	1	15	314.973	-	-	9	1	1	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	28	30	29	0	0	./.	2	4	2	4	15	14	15	14	2	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774981586	3	89964822	TC	T	420	PASS	-	-	-	-	-	Del	-	D	89964822	89964824	1	20	375.395	-	-	1	1	1	-	-	./.	0	0	0	0	33	24	33	24	0	0	./.	4	3	5	5	23	23	23	23	5	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774987423	3	111344280	GAC	G	420	PASS	CD96	CCDS2959.1	r.?	-	-	Del	intronic	D	111344280	111344284	2	20	376.599	-	-	1	1	1	CD96|CCDS2959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD96|CCDS2959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	25	33	25	0	0	./.	4	3	5	6	21	16	21	16	5	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2774988886	3	115952562	CA	C	360	PASS	LSAMP	CCDS2982.1	r.?	-	-	Del	intronic	D	115952562	115952570	1	16	322.799	-	-	7	1	1	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	27	23	27	0	0	./.	3	3	4	5	23	17	23	17	4	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775003526	3	161430167	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	161430167	161430168	1	16	318.585	-	-	0	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	3	3	3	3	26	24	26	24	3	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775011966	3	186258207	TG	T	540	PASS	CRYGS	CCDS3275.1	r.?	-	-	Del	intronic	D	186258207	186258210	1	30	484.199	-	-	2	1	1	CRYGS|CCDS3275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRYGS|CCDS3275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	28	25	28	0	0	./.	5	4	5	6	20	13	20	13	5	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775012093	3	186502769	AAGCTC	A	536	PASS	SNORA63	CCDS3282.1	r.292_296delAGCUC	c.228_232delAGCTC	p.A77fs*20	Del	frameshift	D	186502769	186502777	5	40	584.574	-	-	1	1	1	SNORA63|CCDS3282.1|r.292_296delAGCUC|c.228_232delAGCTC|p.A77fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SNORA63|CCDS3282.1|r.292_296delAGCUC|c.228_232delAGCTC|p.A77fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	25	21	25	21	0	0	./.	7	4	6	5	23	20	24	20	7	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775014121	3	192262410	CAT	C	360	PASS	FGF12	CCDS46983.1	r.?	-	-	Del	intronic	D	192262410	192262416	2	15	322.799	-	-	2	1	1	FGF12|CCDS46983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF12|CCDS46983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	36	19	36	0	0	./.	2	4	2	7	16	19	16	19	2	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775022222	4	19753421	A	AAT	360	PASS	-	-	-	-	-	Ins	-	I	19753421	19753428	2	16	315.49	-	-	3	1	1	-	-	./.	0	0	0	0	30	38	30	38	0	0	./.	3	3	4	4	19	15	19	15	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775033025	4	56456761	CT	C	329	PASS	PDCL2	CCDS47059.1	r.?	-	-	Del	intronic	D	56456761	56456763	1	15	322.715	-	-	1	1	1	PDCL2|CCDS47059.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDCL2|CCDS47059.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	26	23	26	0	0	./.	2	4	3	6	25	28	26	28	3	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775033848	4	58396426	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	58396426	58396431	2	7	321.511	-	-	2	1	1	-	-	./.	0	0	0	0	24	27	24	27	0	0	./.	6	0	6	0	21	15	21	15	6	0	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775040108	4	77678352	AATTT	A	329	PASS	SHROOM3	CCDS3579.2	r.?	-	-	Del	intronic	D	77678352	77678363	4	15	322.715	-	-	2	1	1	SHROOM3|CCDS3579.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHROOM3|CCDS3579.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	28	31	28	0	0	./.	4	2	6	2	30	19	30	19	6	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775041517	4	82926180	GA	G	300	PASS	-	-	-	-	-	Del	-	D	82926180	82926188	1	12	268.929	-	-	7	1	1	-	-	./.	0	0	0	0	24	25	24	25	0	0	./.	2	3	3	3	14	23	14	23	3	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775041591	4	83165271	TCAC	T	389	PASS	-	-	-	-	-	Del	-	D	83165271	83165277	3	20	376.501	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	4	4	5	18	26	18	26	4	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775050691	4	114683828	AT	A	540	PASS	CAMK2D	CCDS3704.1	r.?	-	-	Del	upstream	D	114683828	114683832	1	24	478.654	-	-	3	1	1	CAMK2D|CCDS3704.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CAMK2D|CCDS3704.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	32	21	32	21	0	0	./.	2	7	2	8	18	30	18	30	2	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775051060	4	115960766	TA	T	360	PASS	NDST4	CCDS3706.1	r.?	-	-	Del	intronic	D	115960766	115960771	1	16	322.715	-	-	4	1	1	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	30	24	30	0	0	./.	3	3	3	3	18	17	18	17	3	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775051608	4	117900830	GAAAT	G	329	PASS	-	-	-	-	-	Del	-	D	117900830	117900840	4	7	322.113	-	-	2	1	1	-	-	./.	0	0	0	0	24	39	24	39	0	0	./.	0	6	1	6	14	23	14	23	1	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775051719	4	118238188	GA	G	420	PASS	-	-	-	-	-	Del	-	D	118238188	118238195	1	20	376.501	-	-	6	1	1	-	-	./.	0	0	0	0	31	35	31	35	0	0	./.	3	4	3	5	17	22	17	22	3	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775057246	4	136530473	TG	T	360	PASS	-	-	-	-	-	Del	-	D	136530473	136530475	1	16	322.715	-	-	1	1	1	-	-	./.	0	0	0	0	16	27	16	27	0	0	./.	3	3	4	5	11	18	11	18	4	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775059028	4	141871043	TG	T	360	PASS	RNF150	ENST00000306799	r.?	-	-	Del	intronic	D	141871043	141871046	1	16	322.715	-	-	2	1	1	RNF150|ENST00000306799|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF150|ENST00000306799|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	26	25	26	0	0	./.	3	3	3	4	14	17	14	17	3	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775064409	4	160932436	TGG	T	660	PASS	-	-	-	-	-	Del	-	D	160932436	160932440	2	40	591.644	-	-	3	1	1	-	-	./.	0	0	0	0	29	35	29	35	0	0	./.	4	7	4	8	18	17	18	17	4	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775065566	4	165150656	CAG	C	509	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	165150656	165150659	2	30	484.072	-	-	1	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	26	14	26	0	0	./.	4	5	8	9	14	28	14	28	8	9	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775065913	4	166087822	G	GA	300	PASS	TMEM192	ENST00000506087	r.?	-	-	Ins	intronic	I	166087822	166087830	1	12	264.715	-	-	7	1	1	TMEM192|ENST00000506087|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM192|ENST00000506087|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	34	37	34	38	0	0	./.	2	3	4	4	26	19	26	19	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775071614	4	182537096	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	182537096	182537102	1	20	371.082	-	-	5	1	1	-	-	./.	0	0	0	0	14	26	15	26	0	0	./.	4	3	5	3	15	13	15	13	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775074230	4	188893649	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	188893649	188893658	1	12	319.103	-	-	8	1	1	-	-	./.	0	0	0	0	24	40	24	40	0	0	./.	5	1	5	3	18	19	19	19	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775077342	5	3238021	G	GT	389	PASS	-	-	-	-	-	Ins	-	I	3238021	3238030	1	18	372.761	-	-	8	1	1	-	-	./.	0	0	0	0	30	18	30	18	0	0	./.	2	5	3	6	26	31	29	32	3	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775077795	5	4389935	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	4389935	4389942	1	14	372.761	-	-	6	1	1	-	-	./.	0	0	0	0	25	29	25	29	0	0	./.	1	6	1	8	24	31	24	31	1	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775077934	5	4805572	CT	C	420	PASS	ENSG00000224867	ENST00000416839	r.?	-	-	Del	intronic	D	4805572	4805582	1	20	376.976	-	-	9	1	1	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	34	23	34	0	0	./.	3	4	3	5	25	28	25	28	3	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775081034	5	13586040	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	13586040	13586048	2	16	323.122	-	-	3	1	1	-	-	./.	0	0	0	0	23	24	23	24	0	0	./.	3	3	3	5	24	28	24	28	3	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775081053	5	13640406	AT	A	480	PASS	-	-	-	-	-	Del	-	D	13640406	13640414	1	24	430.829	-	-	7	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	3	8	5	23	9	23	9	8	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775081779	5	15808991	CTTTTT	CA	418	PASS	FBXL7	ENST00000504595	r.?	-	-	Complex	intronic	DI	15808992	15808996	5	25	0	-	-	0	1	1	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	FBXL7|ENST00000504595|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	20	36	20	36	0	0	./.	4	4	0	0	29	27	29	27	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775083182	5	19115571	AG	A	480	PASS	-	-	-	-	-	Del	-	D	19115571	19115573	1	25	430.829	-	-	1	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	4	4	6	5	40	26	40	26	6	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775085861	5	26529976	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	26529976	26529984	1	20	372.761	-	-	7	1	1	-	-	./.	0	0	0	0	35	29	35	29	0	0	./.	4	3	5	3	34	38	34	38	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775087859	5	31702327	A	AT	540	PASS	PDZD2	CCDS34137.1	r.?	-	-	Ins	intronic	I	31702327	31702336	1	28	479.265	-	-	8	1	1	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	24	26	24	0	0	./.	3	6	4	7	35	32	35	32	4	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775101367	5	79070089	TC	T	480	PASS	CMYA5	CCDS47238.1	r.?	-	-	Del	intronic	D	79070089	79070091	1	21	430.829	-	-	1	1	1	CMYA5|CCDS47238.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CMYA5|CCDS47238.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	22	33	22	0	0	./.	2	6	3	6	16	17	16	17	3	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775104521	5	91959096	A	AC	540	PASS	-	-	-	-	-	Ins	-	I	91959096	91959097	1	28	479.265	-	-	0	1	1	-	-	./.	0	0	0	0	37	38	37	38	0	0	./.	6	3	8	5	22	19	22	19	8	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775105121	5	94928253	C	CT	420	PASS	ARSK	CCDS4073.1	r.?	-	-	Ins	intronic	I	94928253	94928263	1	20	372.761	-	-	9	1	1	ARSK|CCDS4073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARSK|CCDS4073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	31	24	31	0	0	./.	3	4	3	4	25	17	26	17	3	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775115101	5	132796759	G	GA	480	PASS	FSTL4	CCDS34238.1	r.?	-	-	Ins	intronic	I	132796759	132796767	1	25	425.411	-	-	7	1	1	FSTL4|CCDS34238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL4|CCDS34238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	37	35	37	35	0	0	./.	4	4	4	4	31	23	31	23	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775115642	5	134629111	CT	C	420	PASS	-	-	-	-	-	Del	-	D	134629111	134629116	1	20	376.976	-	-	4	1	1	-	-	./.	0	0	0	0	25	34	25	34	0	0	./.	3	4	4	7	13	20	13	20	4	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775118197	5	143409396	TA	T	300	PASS	-	-	-	-	-	Del	-	D	143409396	143409402	1	6	269.268	-	-	5	1	1	-	-	./.	0	0	0	0	31	15	31	15	0	0	./.	0	5	2	6	8	15	8	15	2	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775128160	5	176062780	T	TA	300	PASS	EIF4E1B	CCDS47345.1	r.?	-	-	Ins	intronic	I	176062780	176062786	1	6	266.258	-	-	5	1	1	EIF4E1B|CCDS47345.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	EIF4E1B|CCDS47345.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	23	17	24	0	0	./.	0	5	2	8	13	22	13	22	2	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775132669	6	7730018	A	AG	360	PASS	BMP6	CCDS4503.1	r.?	-	-	Ins	intronic	I	7730018	7730025	1	16	319.415	-	-	6	1	1	BMP6|CCDS4503.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BMP6|CCDS4503.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	21	26	21	0	0	./.	3	3	4	6	25	16	25	17	4	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775134071	6	11589026	TCCC	TA	615	PASS	-	-	-	-	-	Complex	-	DI	11589027	11589029	3	49	0	-	-	0	1	1	-	-	./.	0	0	0	0	26	28	26	28	0	0	./.	6	6	0	0	24	19	24	19	6	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775142349	6	32254784	AT	A	420	PASS	-	-	-	-	-	Del	-	D	32254784	32254787	1	20	376.263	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	4	3	4	17	19	17	19	3	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775147956	6	46907616	TATAG	T	269	PASS	GPR116	CCDS4919.1	r.?	-	-	Del	intronic	D	46907616	46907623	4	12	269.189	-	-	1	1	1	GPR116|CCDS4919.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GPR116|CCDS4919.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	22	26	22	0	0	./.	3	2	3	2	32	23	32	23	3	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775151331	6	56137403	CTG	C	509	PASS	COL21A1	ENST00000370819	r.?	-	-	Del	intronic	D	56137403	56137409	2	30	481.53	-	-	2	1	1	COL21A1|ENST00000370819|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	COL21A1|ENST00000370819|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	28	28	28	0	0	./.	4	5	6	8	47	34	47	34	6	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775159990	6	81963363	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	81963363	81963373	1	10	266.179	-	-	9	1	1	-	-	./.	0	0	0	0	32	30	32	30	0	0	./.	4	1	7	1	18	15	18	15	7	1	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775163151	6	92767403	GC	G	480	PASS	-	-	-	-	-	Del	-	D	92767403	92767405	1	25	430.703	-	-	1	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	4	4	5	4	23	15	23	15	5	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775171974	6	124905449	ATC	A	300	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124905449	124905453	2	12	269.189	-	-	1	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	46	29	46	0	0	./.	2	3	3	5	19	15	19	15	3	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775172103	6	125393885	AC	A	420	PASS	RNF217	CCDS5129.1	r.?	-	-	Del	intronic	D	125393885	125393888	1	20	376.865	-	-	2	1	1	RNF217|CCDS5129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF217|CCDS5129.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	33	25	33	0	0	./.	4	3	5	3	22	18	22	18	5	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775182442	6	160619720	TAAA	T	300	PASS	-	-	-	-	-	Del	-	D	160619720	160619726	3	12	269.189	-	-	5	1	1	-	-	./.	0	0	0	0	31	23	31	23	0	0	./.	3	2	4	2	21	16	21	16	4	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775184982	6	168723557	GA	G	300	PASS	DACT2	CCDS47519.1	r.?	-	-	Del	upstream	D	168723557	168723567	1	12	269.189	-	-	9	1	1	DACT2|CCDS47519.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DACT2|CCDS47519.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	38	17	38	0	0	./.	2	3	4	3	19	11	19	11	4	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775185561	6	170480080	GT	G	660	PASS	-	-	-	-	-	Del	-	D	170480080	170480085	1	42	592.216	-	-	4	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	6	5	8	8	20	17	20	17	8	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775188803	7	7623558	G	GT	360	PASS	MIOS	CCDS43554.1	r.?	-	-	Ins	intronic	I	7623558	7623566	1	15	319.709	-	-	7	1	1	MIOS|CCDS43554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIOS|CCDS43554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	32	28	32	28	0	0	./.	2	4	5	7	8	17	8	17	5	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775191764	7	17153506	AC	A	540	PASS	-	-	-	-	-	Del	-	D	17153506	17153508	1	28	484.983	-	-	1	1	1	-	-	./.	0	0	0	0	21	28	21	28	0	0	./.	6	3	7	4	24	12	24	12	7	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775194903	7	26734233	T	TC	480	PASS	SKAP2	CCDS5400.1	r.?	-	-	Ins	intronic	I	26734233	26734235	1	24	426.279	-	-	1	1	1	SKAP2|CCDS5400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SKAP2|CCDS5400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	35	20	35	20	0	0	./.	5	3	6	4	20	17	20	17	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775199865	7	42298474	AC	A	660	PASS	-	-	-	-	-	Del	-	D	42298474	42298476	1	42	592.757	-	-	1	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	5	6	8	11	22	20	22	20	8	11	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775205401	7	61526836	CT	C	347	PASS	-	-	-	-	-	Del	-	D	61526836	61526841	1	15	323.322	-	-	4	1	1	-	-	./.	0	0	0	0	41	48	41	50	0	0	./.	2	4	2	4	30	33	31	33	2	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775211233	7	77538561	T	TTAA	300	PASS	PHTF2	CCDS47622.1	r.?	-	-	Ins	intronic	I	77538561	77538569	3	12	259.2	-	-	2	1	1	PHTF2|CCDS47622.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHTF2|CCDS47622.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	34	30	34	30	0	0	./.	3	2	4	2	13	13	13	13	4	2	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775218996	7	106330980	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	106330980	106330987	1	12	266.425	-	-	6	1	1	-	-	./.	0	0	0	0	19	17	20	17	0	0	./.	3	2	9	4	25	16	25	16	9	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775245728	8	40694607	G	GT	360	PASS	ZMAT4	CCDS34885.1	r.?	-	-	Ins	intronic	I	40694607	40694615	1	15	319.437	-	-	7	1	1	ZMAT4|CCDS34885.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZMAT4|CCDS34885.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	38	26	40	0	0	./.	4	2	6	4	30	23	30	23	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775250433	8	60027931	CT	C	540	PASS	TOX	CCDS34897.1	r.?	-	-	Del	intronic	D	60027931	60027935	1	30	485.478	-	-	3	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	40	26	40	26	0	0	./.	5	4	11	5	22	20	22	20	11	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775253125	8	69479496	C	CT	277	PASS	C8orf34	CCDS6203.1	r.?	-	-	Ins	intronic	I	69479496	69479505	1	12	266.699	-	-	8	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	33	23	33	0	0	./.	2	3	5	8	13	30	13	30	5	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775253883	8	71690037	G	GT	472	PASS	-	-	-	-	-	Ins	-	I	71690037	71690047	1	21	426.719	-	-	9	1	1	-	-	./.	0	0	0	0	35	28	35	28	0	0	./.	6	2	9	3	34	24	35	25	9	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775256690	8	80945677	TG	T	600	PASS	TPD52	CCDS34912.1	r.?	-	-	Del	downstream	D	80945677	80945682	1	36	535.205	-	-	4	1	1	TPD52|CCDS34912.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MRPS28|CCDS6226.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	20	17	20	17	0	0	./.	5	5	6	5	17	18	17	18	6	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775258896	8	88213392	G	GA	360	PASS	CNBD1	ENST00000319712	r.?	-	-	Ins	upstream	I	88213392	88213399	1	16	320.039	-	-	6	1	1	CNBD1|ENST00000319712|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CNBD1|ENST00000319712|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	50	39	52	39	0	0	./.	3	3	3	7	24	21	25	21	3	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775268920	8	120730024	GA	G	720	PASS	-	-	-	-	-	Del	-	D	120730024	120730026	1	45	646.099	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	8	5	9	14	28	14	28	5	9	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775275624	8	140837316	TG	T	660	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	140837316	140837321	1	36	593.362	-	-	4	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	27	21	27	0	0	./.	3	8	6	9	26	23	26	23	6	9	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775280111	9	9441700	GA	G	276	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9441700	9441710	1	12	270.164	-	-	9	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	41	17	41	0	0	./.	3	2	4	4	18	19	18	19	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775282000	9	16138923	GT	G	420	PASS	-	-	-	-	-	Del	-	D	16138923	16138929	1	20	378.23	-	-	5	1	1	-	-	./.	0	0	0	0	27	19	27	19	0	0	./.	3	4	4	6	13	17	13	17	4	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775282780	9	18688018	A	AT	300	PASS	ADAMTSL1	CCDS47954.1	r.?	-	-	Ins	intronic	I	18688018	18688027	1	12	267.154	-	-	8	1	1	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	36	18	36	0	0	./.	2	3	2	4	8	20	8	21	2	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775284838	9	27608925	GC	G	300	PASS	-	-	-	-	-	Del	-	D	27608925	27608928	1	12	269.562	-	-	2	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	2	3	4	4	12	15	12	15	4	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775285802	9	30805635	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	30805635	30805643	1	28	480.877	-	-	7	1	1	-	-	./.	0	0	0	0	42	43	42	43	0	0	./.	3	6	4	7	16	11	16	11	4	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775303107	9	111671163	C	CAT	360	PASS	IKBKAP	CCDS6773.1	r.?	-	-	Ins	intronic	I	111671163	111671164	2	15	311.554	-	-	0	1	1	IKBKAP|CCDS6773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IKBKAP|CCDS6773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	22	0	0	./.	2	4	2	6	11	17	11	17	2	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775304983	9	117284296	TG	T	420	PASS	-	-	-	-	-	Del	-	D	117284296	117284298	1	18	378.23	-	-	1	1	1	-	-	./.	0	0	0	0	17	26	17	26	0	0	./.	5	2	7	3	17	13	17	13	7	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775306086	9	121143619	CA	C	420	PASS	-	-	-	-	-	Del	-	D	121143619	121143623	1	20	378.23	-	-	3	1	1	-	-	./.	0	0	0	0	20	41	20	41	0	0	./.	4	3	5	5	18	13	18	13	5	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775306298	9	122176711	T	TTAATA	300	PASS	-	-	-	-	-	Ins	-	I	122176711	122176717	5	12	255.113	-	-	1	1	1	-	-	./.	0	0	0	0	24	22	24	23	0	0	./.	2	3	3	3	10	11	10	11	3	3	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775313851	X	8723080	ATAT	A	540	PASS	-	-	-	-	-	Del	-	D	8723080	8723090	3	30	486.396	-	-	3	1	1	-	-	./.	0	0	0	0	24	32	24	32	0	0	./.	4	5	6	6	32	28	32	28	6	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775315091	X	13658902	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	13658902	13658911	1	24	426.332	-	-	8	1	1	-	-	./.	0	0	0	0	29	16	29	16	0	0	./.	3	5	5	6	30	32	30	32	5	6	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775316276	X	18096760	GT	G	300	PASS	-	-	-	-	-	Del	-	D	18096760	18096766	1	6	270.22	-	-	5	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	0	5	0	5	16	19	16	19	0	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775316798	X	19762538	T	TG	420	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Ins	intronic	I	19762538	19762544	1	18	372.288	-	-	5	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	25	24	25	0	0	./.	2	5	2	5	22	24	22	24	2	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775323507	X	47332430	AT	A	540	PASS	ZNF41	CCDS14279.1	r.?	-	-	Del	intronic	D	47332430	47332440	1	30	483.988	-	-	9	1	1	ZNF41|CCDS14279.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF41|CCDS14279.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	34	22	34	22	0	0	./.	5	4	6	4	20	17	20	17	6	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775331355	X	92009675	CTA	C	478	PASS	-	-	-	-	-	Del	-	D	92009675	92009682	2	24	486.396	-	-	3	1	1	-	-	./.	0	0	0	0	36	25	36	25	0	0	./.	2	7	2	7	7	13	7	13	2	7	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775331579	X	93365200	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	93365200	93365204	2	10	270.22	-	-	3	1	1	-	-	./.	0	0	0	0	20	28	20	28	0	0	./.	1	4	2	4	15	11	15	11	2	4	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775337411	X	123900275	CTT	C	660	PASS	ODZ1	CCDS14609.1	r.?	-	-	Del	intronic	D	123900275	123900280	2	42	594.484	-	-	4	1	1	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	36	33	36	0	0	./.	6	5	7	5	10	12	10	12	7	5	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775339420	X	133320055	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	133320055	133320063	1	35	530.808	-	-	7	1	1	-	-	./.	0	0	0	0	17	30	18	30	0	0	./.	4	6	6	8	16	20	16	20	6	8	1	1	1	1	1	1	1	1
2820495	PD14446a	PD14446b	2775341077	X	141195370	AATG	A	360	PASS	-	-	-	-	-	Del	-	D	141195370	141195376	3	16	324.264	-	-	1	1	1	-	-	./.	0	0	0	0	37	18	37	18	0	0	./.	3	3	5	4	14	15	14	15	5	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717695792	1	23642851	GT	G	449	PASS	HNRNPR	CCDS232.1	r.?	-	-	Del	intronic	D	23642851	23642855	1	24	428.41	-	-	3	1	1	HNRNPR|CCDS232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HNRNPR|CCDS232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	5	4	7	21	22	21	22	4	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717697502	1	27676198	CCT	C	420	PASS	SYTL1	CCDS298.1	r.821_822delCU	c.654_655delCT	p.L220fs*14	Del	frameshift	D	27676198	27676206	2	14	376.439	-	-	3	1	1	SYTL1|CCDS298.1|r.821_822delCU|c.654_655delCT|p.L220fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SYTL1|CCDS298.1|r.821_822delCU|c.654_655delCT|p.L220fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	7	8	7	8	0	0	./.	6	1	12	4	21	17	21	17	12	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717701721	1	40385726	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	40385726	40385734	1	20	372.224	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	4	3	4	5	32	21	32	22	4	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717701862	1	40705444	GCCT	G	447	PASS	RLF	CCDS448.1	r.5098_5100delCCU	c.5071_5073delCCT	p.P1694delP	Del	inframe	D	40705444	40705457	3	28	480.983	-	-	4	1	1	RLF|CCDS448.1|r.5098_5100delCCU|c.5071_5073delCCT|p.P1694delP|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	RLF|CCDS448.1|r.5098_5100delCCU|c.5071_5073delCCT|p.P1694delP|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	7	5	7	5	0	0	./.	6	3	8	6	23	24	23	24	8	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717722061	1	108622239	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	108622239	108622249	1	6	265.875	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	10	0	0	./.	0	5	0	5	16	26	16	27	0	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717741845	1	184006112	G	GC	300	PASS	GLT25D2	CCDS1360.1	r.?	-	-	Ins	intronic	I	184006112	184006120	1	6	265.875	-	-	7	1	1	GLT25D2|CCDS1360.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GLT25D2|CCDS1360.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	5	0	5	3	26	19	26	19	5	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717742749	1	187488273	ATTT	A	329	PASS	-	-	-	-	-	Del	-	D	187488273	187488279	3	15	322.662	-	-	5	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	4	3	4	16	18	16	18	3	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717745588	1	195215591	CT	C	898	PASS	-	-	-	-	-	Del	-	D	195215591	195215595	1	80	860.432	-	-	3	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	7	9	8	14	20	32	20	32	8	14	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717754477	1	222089865	C	CAG	300	PASS	-	-	-	-	-	Ins	-	I	222089865	222089867	2	10	262.262	-	-	0	1	-	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	1	4	5	7	18	21	18	21	5	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717786355	10	59890978	G	GTA	275	PASS	-	-	-	-	-	Ins	-	I	59890978	59890984	2	12	263.674	-	-	2	1	-	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	3	5	18	27	19	27	3	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717789585	10	69171570	A	AT	480	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Ins	intronic	I	69171570	69171572	1	25	426.696	-	-	1	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	4	4	5	4	28	19	29	19	5	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717795527	10	87583424	G	GA	360	PASS	GRID1	CCDS31236.1	r.?	-	-	Ins	intronic	I	87583424	87583433	1	15	320.022	-	-	8	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	11	11	0	0	./.	4	2	5	2	31	14	31	14	5	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717803090	10	109663540	CTTTTGTTCAGTGGCTCTGGAGAGTCAAAA	C	319	PASS	-	-	-	-	-	Del	-	D	109663540	109663570	29	42	593.329	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	5	6	2	4	17	17	21	19	6	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717805448	10	117322910	TC	T	300	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	117322910	117322913	1	12	269.695	-	-	2	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	4	5	22	20	22	20	4	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717821565	11	25194757	TC	T	300	PASS	-	-	-	-	-	Del	-	D	25194757	25194759	1	6	245.77	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	0	7	0	45	20	45	20	7	0	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717828667	11	43539498	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	43539498	43539508	1	21	425.141	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	6	2	9	4	42	26	42	28	9	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717836274	11	65946736	C	CAA	1380	PASS	PACS1	CCDS8129.1	r.?	-	-	Ins	intronic	I	65946736	65946739	2	156	1211.82	-	-	2	1	1	PACS1|CCDS8129.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PACS1|CCDS8129.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	12	11	14	11	38	28	38	28	14	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717839385	11	73450533	A	ATTTTTTG	719	PASS	RAB6A	CCDS8223.1	r.?	-	-	Ins	intronic	I	73450533	73450540	7	92	1239.69	-	-	0	1	1	RAB6A|CCDS8223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB6A|CCDS8223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	2	11	2	0	0	./.	22	3	23	2	68	8	70	9	24	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717840609	11	75087931	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	75087931	75087940	1	28	480.315	-	-	8	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	6	3	9	4	84	85	84	85	9	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717841023	11	75795066	CTG	C	480	PASS	UVRAG	CCDS8241.1	r.?	-	-	Del	intronic	D	75795066	75795070	2	24	431.764	-	-	1	1	1	UVRAG|CCDS8241.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UVRAG|CCDS8241.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	5	5	9	77	65	77	65	5	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717841186	11	76094818	T	TC	389	PASS	PRKRIR	CCDS8243.1	r.?	-	-	Ins	upstream	I	76094818	76094822	1	20	371.773	-	-	3	1	1	PRKRIR|CCDS8243.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000179240|ENST00000321844|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	4	5	7	71	106	73	107	5	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717841601	11	76773252	TGTA	T	269	PASS	CAPN5	CCDS8248.1	r.?	-	-	Del	upstream	D	76773252	76773256	3	6	257.811	-	-	1	1	-	CAPN5|CCDS8248.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CAPN5|CCDS8248.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	7	8	7	0	0	./.	5	0	14	0	59	56	59	56	14	0	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717845105	11	82650488	TG	T	660	PASS	C11orf82	CCDS8263.1	r.?	-	-	Del	downstream	D	82650488	82650491	1	42	592.471	-	-	2	1	1	C11orf82|CCDS8263.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C11orf82|CCDS8263.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	7	6	7	0	0	./.	6	5	6	9	69	87	69	87	6	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717845945	11	85661538	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	85661538	85661541	1	54	693.187	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	5	9	7	19	17	19	17	9	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717849830	11	98598397	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	98598397	98598407	1	12	266.24	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	16	0	0	./.	2	3	2	5	11	26	11	26	2	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717850446	11	100539590	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	100539590	100539599	1	12	264.434	-	-	8	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	4	2	23	22	23	22	4	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717854209	11	112438944	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	112438944	112438951	1	12	320.21	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	1	6	5	22	14	22	15	6	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717855516	11	117004229	C	CAG	495	PASS	-	-	-	-	-	Ins	-	I	117004229	117004232	2	30	459.845	-	-	1	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	5	5	6	15	13	15	14	5	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717863933	12	7927416	AT	A	569	PASS	ENSG00000205857	CCDS44826.1	r.?	-	-	Del	downstream	D	7927416	7927425	1	35	539.262	-	-	8	1	1	ENSG00000205857|CCDS44826.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000205857|CCDS44826.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	8	9	8	0	0	./.	6	4	7	5	21	23	22	23	7	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717864507	12	8915529	CT	C	478	PASS	RIMKLB	CCDS41748.1	r.?	-	-	Del	intronic	D	8915529	8915538	1	30	484.673	-	-	8	1	1	RIMKLB|CCDS41748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMKLB|CCDS41748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	5	4	7	6	30	23	30	23	7	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717871754	12	26867789	TG	T	540	PASS	ITPR2	CCDS41764.1	r.?	-	-	Del	intronic	D	26867789	26867792	1	30	485.878	-	-	2	1	1	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	5	4	8	5	26	14	26	14	8	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717875112	12	34675936	CCAGT	C	298	PASS	-	-	-	-	-	Del	-	D	34675936	34675943	4	12	322.714	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	5	1	5	21	27	21	27	1	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717876237	12	40988887	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	40988887	40988897	1	12	264.513	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	2	3	36	28	36	28	2	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717883966	12	62235870	A	AT	360	PASS	FAM19A2	CCDS8962.1	r.?	-	-	Ins	intronic	I	62235870	62235880	1	15	320.306	-	-	9	1	1	FAM19A2|CCDS8962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A2|CCDS8962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	2	4	4	6	29	37	30	37	4	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717885417	12	66339547	A	AT	360	PASS	HMGA2	CCDS44936.1	r.?	-	-	Ins	intronic	I	66339547	66339554	1	16	320.306	-	-	6	1	1	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	4	6	27	35	27	35	4	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717897920	12	101680156	G	GT	480	PASS	UTP20	CCDS9081.1	r.540_541insu	c.384_385insT	p.L131fs*27	Ins	frameshift	I	101680156	101680165	1	25	427.075	-	-	8	1	1	UTP20|CCDS9081.1|r.540_541insu|c.384_385insT|p.L131fs*27|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	UTP20|CCDS9081.1|r.540_541insu|c.384_385insT|p.L131fs*27|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	7	9	7	9	0	0	./.	4	4	4	5	33	28	33	29	4	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717899346	12	105409955	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	105409955	105409963	1	42	587.228	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	6	5	10	6	23	21	23	21	10	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717899736	12	106384125	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	106384125	106384127	1	30	584.819	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	9	5	12	28	43	28	45	5	12	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717908364	12	127486717	T	TA	540	PASS	AC078878.2	ENST00000512624	r.?	-	-	Ins	intronic	I	127486717	127486725	1	30	479.255	-	-	7	1	1	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	18	6	18	0	0	./.	4	5	5	12	32	34	32	35	5	12	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717924138	13	57863951	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	57863951	57863961	1	20	372.368	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	3	5	7	16	19	16	19	5	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717937182	13	97932889	GC	G	420	PASS	MBNL2	CCDS9484.1	r.?	-	-	Del	intronic	D	97932889	97932893	1	20	378.99	-	-	3	1	1	MBNL2|CCDS9484.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MBNL2|CCDS9484.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	4	6	7	17	18	17	18	6	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717945539	14	27932527	CAATG	C	269	PASS	-	-	-	-	-	Del	-	D	27932527	27932532	4	10	271.416	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	4	13	16	13	16	1	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717950798	14	44360738	TGCTGCAATTTTAAATAAGGGC	T	522	PASS	-	-	-	-	-	Del	-	D	44360738	44360760	21	100	977.097	-	-	1	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	9	9	7	9	23	14	25	14	9	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717971426	15	22501023	G	GA	254	PASS	-	-	-	-	-	Ins	-	I	22501023	22501033	1	12	268.457	-	-	9	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	3	2	3	3	37	41	37	41	3	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717978334	15	45058934	TA	T	509	PASS	TRIM69	CCDS32220.1	r.?	-	-	Del	intronic	D	45058934	45058936	1	30	485.028	-	-	1	1	1	TRIM69|CCDS32220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM69|CCDS32220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	4	5	7	6	17	11	17	11	7	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717984135	15	63986355	T	TC	660	PASS	HERC1	CCDS45277.1	r.5629_5630insg	c.5481_5482insG	p.T1828fs*4	Ins	frameshift	I	63986355	63986358	1	42	590.605	-	-	2	1	1	HERC1|CCDS45277.1|r.5629_5630insg|c.5481_5482insG|p.T1828fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	HERC1|CCDS45277.1|r.5629_5630insg|c.5481_5482insG|p.T1828fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	14	17	15	17	0	0	./.	5	6	9	7	21	13	21	13	9	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717992541	15	91724483	AG	A	437	PASS	SV2B	CCDS10370.1	r.?	-	-	Del	intronic	D	91724483	91724485	1	28	488.039	-	-	1	1	1	SV2B|CCDS10370.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SV2B|CCDS10370.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	6	5	9	18	34	18	34	5	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717992944	15	93069550	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	93069550	93069557	1	12	268.457	-	-	6	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	4	4	22	23	22	23	4	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717998012	16	3397748	ACACACACGCACACATATGAACACACATG	A	406	PASS	-	-	-	-	-	Del	-	D	3397748	3397791	28	55	757.983	-	-	1	1	-	-	-	./.	0	0	0	0	9	2	9	2	0	0	./.	4	10	1	6	15	21	16	23	4	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717998046	16	3472088	TG	T	329	PASS	-	-	-	-	-	Del	-	D	3472088	3472091	1	12	323.646	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	1	7	2	27	31	27	31	7	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2717998639	16	4939042	T	TG	929	PASS	PPL	CCDS10526.1	r.2423_2424insc	c.2333_2334insC	p.S779fs*2	Ins	frameshift	I	4939042	4939044	1	72	855.429	-	-	1	1	1	PPL|CCDS10526.1|r.2423_2424insc|c.2333_2334insC|p.S779fs*2|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	PPL|CCDS10526.1|r.2423_2424insc|c.2333_2334insC|p.S779fs*2|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	9	13	9	13	0	0	./.	5	11	8	12	19	31	20	31	8	12	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718005964	16	21611954	GT	G	658	PASS	METTL9	CCDS10598.2	r.?	-	-	Del	intronic	D	21611954	21611957	1	48	649.098	-	-	2	1	1	METTL9|CCDS10598.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	METTL9|CCDS10598.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	2	8	2	0	0	./.	7	5	8	6	28	19	28	19	8	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718008104	16	26617226	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	26617226	26617236	1	12	267.698	-	-	9	1	1	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	2	3	2	3	32	19	32	19	2	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718018250	16	60969371	GC	G	660	PASS	-	-	-	-	-	Del	-	D	60969371	60969373	1	36	595.558	-	-	1	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	8	6	11	23	22	23	22	6	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718024805	16	77330938	ATCATGACTCACT	A	385	PASS	ADAMTS18	CCDS10926.1	r.?	-	-	Del	intronic	D	77330938	77330951	12	44	685.177	-	-	1	1	1	ADAMTS18|CCDS10926.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS18|CCDS10926.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	10	3	11	2	36	17	36	18	11	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718028924	16	87599948	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	87599948	87599957	1	50	691.8	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	14	12	0	0	./.	9	4	15	9	50	25	50	26	15	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718037060	17	17058983	CATGACTTCATTTATTAAA	C	290	PASS	MPRIP	CCDS32578.1	r.?	-	-	Del	intronic	D	17058983	17059002	18	35	541.604	-	-	1	1	1	MPRIP|CCDS32578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MPRIP|CCDS32578.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	4	6	5	24	23	24	23	6	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718040068	17	25432694	CACA	C	387	PASS	-	-	-	-	-	Del	-	D	25432694	25432700	3	24	433.283	-	-	1	1	1	-	-	./.	0	0	0	0	8	2	8	2	0	0	./.	3	5	4	6	15	25	15	26	4	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718040167	17	25669994	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	25669994	25670011	2	12	270.2	-	-	8	1	-	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	2	4	3	31	40	31	40	4	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718040749	17	27531197	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	27531197	27531204	1	12	321.35	-	-	6	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	5	2	5	32	23	35	23	2	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718048470	17	45644981	C	CG	282	PASS	NPEPPS	CCDS45721.1	r.?	-	-	Ins	intronic	I	45644981	45644982	1	24	427.262	-	-	0	1	1	NPEPPS|CCDS45721.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPEPPS|CCDS45721.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	3	14	3	0	0	./.	3	5	6	6	24	27	24	27	6	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718071313	18	26171168	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	26171168	26171177	1	16	429.091	-	-	8	1	1	-	-	./.	0	0	0	0	6	7	6	8	0	0	./.	1	7	3	11	21	15	21	15	3	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718075438	18	41532091	TTC	T	329	PASS	-	-	-	-	-	Del	-	D	41532091	41532109	2	15	325.882	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	2	4	24	23	24	23	2	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718097978	19	21698353	A	AT	300	PASS	ZNF429	CCDS42537.1	r.?	-	-	Ins	intronic	I	21698353	21698363	1	6	268.121	-	-	9	1	1	ZNF429|CCDS42537.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF429|CCDS42537.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	0	5	0	37	29	37	29	5	0	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718164841	2	178284110	TTTGTA	T	596	PASS	AGPS	CCDS2275.1	r.?	-	-	Del	intronic	D	178284110	178284116	5	45	645.041	-	-	1	1	1	AGPS|CCDS2275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGPS|CCDS2275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	8	4	9	20	25	20	25	4	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718173491	2	207399395	TAA	T	360	PASS	ADAM23	CCDS2369.1	r.?	-	-	Del	intronic	D	207399395	207399398	2	15	323.123	-	-	2	1	1	ADAM23|CCDS2369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM23|CCDS2369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	2	4	4	15	16	15	16	4	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718179922	2	228078792	TA	T	389	PASS	COL4A3	CCDS42829.1	r.?	-	-	Del	intronic	D	228078792	228078796	1	20	376.976	-	-	3	1	1	COL4A3|CCDS42829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A3|CCDS42829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	3	4	4	10	14	10	14	4	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718181124	2	231335609	CTG	C	360	PASS	SP100	CCDS2477.1	r.?	-	-	Del	intronic	D	231335609	231335629	2	12	318.908	-	-	9	1	-	SP100|CCDS2477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP100|CCDS2477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	1	5	2	5	17	23	17	23	2	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718181729	2	233101354	TACA	T	743	PASS	DIS3L2	CCDS42834.1	r.?	-	-	Del	intronic	D	233101354	233101362	3	81	861.058	-	-	2	1	1	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	8	8	12	10	24	27	24	27	12	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718195927	20	35447232	CAG	C	329	PASS	C20orf117	CCDS46598.1	r.?	-	-	Del	intronic	D	35447232	35447237	2	15	326.234	-	-	2	1	1	C20orf117|CCDS46598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf117|CCDS46598.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	2	5	4	33	27	33	27	5	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718196403	20	36612357	CAGG	C	718	PASS	KIAA0406	CCDS13300.1	r.?	-	-	Del	intronic	D	36612357	36612363	3	56	706.84	-	-	1	1	1	KIAA0406|CCDS13300.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0406|CCDS13300.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	6	7	8	7	26	21	26	21	8	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718204169	20	57829021	ATC	A	300	PASS	ZNF831	CCDS42894.1	r.4258_4259delUC	c.4258_4259delTC	p.L1421fs*3	Del	frameshift	D	57829021	57829027	2	10	271.861	-	-	2	1	1	ZNF831|CCDS42894.1|r.4258_4259delUC|c.4258_4259delTC|p.L1421fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZNF831|CCDS42894.1|r.4258_4259delUC|c.4258_4259delTC|p.L1421fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	5	1	26	18	26	18	5	1	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718214647	21	29968374	A	AT	809	PASS	-	-	-	-	-	Ins	-	I	29968374	29968383	1	63	736.84	-	-	8	1	1	-	-	./.	0	0	0	0	13	7	14	7	0	0	./.	6	8	9	11	24	26	25	26	9	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718216065	21	33503604	CTAA	C	505	PASS	-	-	-	-	-	Del	-	D	33503604	33503608	3	40	598.814	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	7	4	8	5	23	22	23	22	8	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718228070	22	33326332	GC	G	360	PASS	SYN3	CCDS13908.1	r.?	-	-	Del	intronic	D	33326332	33326335	1	16	327.974	-	-	2	1	1	SYN3|CCDS13908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYN3|CCDS13908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	3	4	5	23	8	23	8	4	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718229890	22	38572287	C	CT	1020	PASS	PLA2G6	CCDS13967.1	r.?	-	-	Ins	intronic	I	38572287	38572289	1	70	913.608	-	-	1	1	1	PLA2G6|CCDS13967.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PLA2G6|CCDS13967.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	13	4	15	6	26	13	27	13	15	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718232313	22	46082331	AGGGCTTCATAGAGGGAGTCTGTTTGTCTG	A	290	PASS	ATXN10	CCDS14070.1	r.?	-	-	Del	intronic	D	46082331	46082362	29	36	546.624	-	-	1	1	1	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	5	5	5	3	18	22	19	24	6	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718237217	3	8301849	AT	A	480	PASS	ENSG00000234563	ENST00000446572	r.?	-	-	Del	intronic	D	8301849	8301852	1	21	430.678	-	-	2	1	1	ENSG00000234563|ENST00000446572|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000234563|ENST00000446572|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	6	5	10	17	30	17	30	5	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718238236	3	11150907	C	CT	960	PASS	-	-	-	-	-	Ins	-	I	11150907	11150914	1	77	851.723	-	-	6	1	1	-	-	./.	0	0	0	0	8	17	9	17	0	0	./.	10	6	16	11	33	32	33	33	16	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718238993	3	12698496	CG	C	660	PASS	RAF1	CCDS2612.1	r.?	-	-	Del	intronic	D	12698496	12698501	1	40	584.355	-	-	4	1	1	RAF1|CCDS2612.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAF1|CCDS2612.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	7	4	10	8	23	24	23	24	10	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718256929	3	63488858	A	AT	720	PASS	SYNPR	CCDS46859.1	r.?	-	-	Ins	intronic	I	63488858	63488867	1	48	635.18	-	-	8	1	1	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	7	5	9	10	26	30	26	31	9	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718257008	3	63768889	AT	A	720	PASS	-	-	-	-	-	Del	-	D	63768889	63768891	1	45	645.414	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	8	4	11	18	34	18	34	4	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718262130	3	75941506	CT	C	720	PASS	-	-	-	-	-	Del	-	D	75941506	75941510	1	40	645.414	-	-	3	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	3	9	7	10	23	23	23	23	7	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718265400	3	85772810	AT	A	540	PASS	CADM2	CCDS33792.1	r.?	-	-	Del	upstream	D	85772810	85772812	1	30	484.512	-	-	1	1	1	CADM2|CCDS33792.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	4	5	4	16	29	16	29	5	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718269534	3	101989764	TCTCA	T	418	PASS	ZPLD1	ENST00000491959	r.?	-	-	Del	intronic	D	101989764	101989773	4	25	430.678	-	-	2	1	1	ZPLD1|ENST00000491959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZPLD1|ENST00000491959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	4	4	5	6	20	16	20	16	5	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718270257	3	104075556	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	104075556	104075571	2	12	269.174	-	-	7	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	2	3	2	3	20	42	20	42	2	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718271368	3	107268165	AAAAT	A	840	PASS	BBX	CCDS2950.1	r.?	-	-	Del	intronic	D	107268165	107268177	4	63	753.686	-	-	2	1	1	BBX|CCDS2950.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BBX|CCDS2950.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	8	6	9	7	22	22	22	22	9	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718279612	3	130713179	TTTCACCTTTTTCTGGGCACTAATATGA	T	290	PASS	ATP2C1	CCDS46914.1	r.?	-	-	Del	intronic	D	130713179	130713208	27	32	536.541	-	-	1	1	1	ATP2C1|CCDS46914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP2C1|CCDS46914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	7	1	5	13	28	15	30	3	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718281885	3	137822108	TAC	T	300	PASS	DZIP1L	CCDS3096.1	r.?	-	-	Del	intronic	D	137822108	137822125	2	10	267.367	-	-	8	1	-	DZIP1L|CCDS3096.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DZIP1L|CCDS3096.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	5	1	28	22	28	22	5	1	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718285589	3	148479183	TACAGAGCTTC	TAAAG	333	PASS	-	-	-	-	-	Complex	-	DI	148479184	148479193	10	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	8	3	11	5	0	0	./.	5	4	0	0	19	23	27	34	5	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718301277	3	191662022	TA	T	420	PASS	-	-	-	-	-	Del	-	D	191662022	191662024	1	20	375.639	-	-	1	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	4	3	9	8	25	26	25	26	9	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718310860	4	24111201	CTTACGGCATCTGAAATGTTAGAGTCTCCA	C	290	PASS	-	-	-	-	-	Del	-	D	24111201	24111232	29	32	539.295	-	-	1	1	1	-	-	./.	0	0	0	0	6	4	6	4	0	0	./.	7	3	4	3	9	9	12	9	7	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718317386	4	43640071	C	CG	629	PASS	-	-	-	-	-	Ins	-	I	43640071	43640078	1	36	586.602	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	8	3	11	4	21	12	21	12	11	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718318752	4	48720360	GACTGGTGAAATAT	G	290	PASS	FRYL	CCDS43227.1	r.?	-	-	Del	intronic	D	48720360	48720375	13	35	539.295	-	-	1	1	1	FRYL|CCDS43227.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FRYL|CCDS43227.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	4	6	3	4	16	17	17	19	4	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718319118	4	49203023	TCCCGCTGACAAGGCTGCCCTGACCAGGGC	T	296	PASS	-	-	-	-	-	Del	-	D	49203023	49203056	29	9	428.425	-	-	1	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	0	8	0	1	8	12	8	20	0	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718349551	4	153476400	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	153476400	153476404	2	6	250.984	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	0	7	0	32	12	32	12	7	0	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718352576	4	163075814	CA	C	780	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	163075814	163075821	1	50	701.083	-	-	6	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	9	4	9	6	20	17	20	17	9	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718359513	4	183613210	G	GT	420	PASS	ODZ3	CCDS47165.1	r.?	-	-	Ins	intronic	I	183613210	183613217	1	18	373.292	-	-	6	1	1	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	2	10	6	22	14	22	14	10	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718365039	5	4475261	TC	T	360	PASS	-	-	-	-	-	Del	-	D	4475261	4475264	1	16	321.943	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	3	4	32	23	32	23	3	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718368495	5	14209028	T	TAC	540	PASS	TRIO	CCDS3883.1	r.?	-	-	Ins	intronic	I	14209028	14209030	2	30	474.786	-	-	0	1	1	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	5	7	8	28	25	28	25	7	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718371678	5	22836795	C	CA	329	PASS	CDH12	CCDS3890.1	r.?	-	-	Ins	intronic	I	22836795	22836805	1	15	320.137	-	-	9	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	5	2	43	21	44	22	5	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718379924	5	45521336	CT	C	360	PASS	HCN1	CCDS3952.1	r.?	-	-	Del	intronic	D	45521336	45521338	1	16	323.749	-	-	1	1	1	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	9	22	9	0	0	./.	3	3	4	4	19	19	19	19	4	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718381611	5	53537999	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	53537999	53538018	2	12	268.587	-	-	9	1	-	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	2	3	26	20	26	20	2	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718395205	5	98506301	TG	T	540	PASS	-	-	-	-	-	Del	-	D	98506301	98506305	1	30	485.022	-	-	3	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	4	5	4	8	13	22	13	22	4	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718396699	5	104118715	TA	T	540	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Del	intronic	D	104118715	104118723	1	24	485.624	-	-	7	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	7	2	13	4	33	12	33	12	13	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718399614	5	115190764	GTC	G	660	PASS	AP3S1	CCDS4123.1	r.?	-	-	Del	intronic	D	115190764	115190770	2	36	593.54	-	-	2	1	1	AP3S1|CCDS4123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3S1|CCDS4123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	8	3	10	9	28	18	28	18	10	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718404315	5	132503876	G	GT	691	PASS	-	-	-	-	-	Ins	-	I	132503876	132503883	1	48	640.273	-	-	6	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	5	7	9	7	13	20	13	21	9	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718406283	5	139890403	CGT	C	269	PASS	ANKHD1	CCDS4224.1	r.?	-	-	Del	intronic	D	139890403	139890423	2	12	269.791	-	-	9	1	-	ANKHD1|CCDS4224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKHD1|CCDS4224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	2	3	17	19	17	19	2	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718415671	5	172749709	T	TCA	660	PASS	STC2	CCDS4388.1	r.?	-	-	Ins	intronic	I	172749709	172749713	2	42	579.693	-	-	1	1	1	STC2|CCDS4388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STC2|CCDS4388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	9	0	0	./.	6	5	7	6	18	20	18	20	7	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718438971	6	47953002	G	GA	360	PASS	C6orf138	ENST00000398738	r.?	-	-	Ins	intronic	I	47953002	47953011	1	12	318.708	-	-	8	1	1	C6orf138|ENST00000398738|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf138|ENST00000398738|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	5	1	5	1	32	23	32	23	5	1	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718439801	6	50529679	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	50529679	50529689	1	10	266.594	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	1	4	1	30	25	30	25	4	1	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718442107	6	56455415	G	GA	300	PASS	DST	CCDS47441.1	r.?	-	-	Ins	intronic	I	56455415	56455425	1	10	266.594	-	-	9	1	1	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	1	4	1	4	26	30	26	31	1	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718451226	6	85720099	TA	T	780	PASS	-	-	-	-	-	Del	-	D	85720099	85720101	1	44	699.766	-	-	1	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	10	8	13	18	20	18	20	8	13	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718451722	6	87382859	CT	C	1020	PASS	-	-	-	-	-	Del	-	D	87382859	87382863	1	88	914.245	-	-	3	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	10	7	14	12	23	20	23	20	14	12	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718456347	6	103009620	TG	T	420	PASS	-	-	-	-	-	Del	-	D	103009620	103009630	1	18	377.446	-	-	9	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	2	6	2	70	52	70	52	6	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718456909	6	104190779	CTA	C	660	PASS	-	-	-	-	-	Del	-	D	104190779	104190782	2	42	593.129	-	-	1	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	5	10	8	85	83	85	83	10	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718457410	6	105104906	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	105104906	105104915	1	24	478.665	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	7	2	1	0	107	105	107	105	8	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718466629	6	136152467	C	CA	900	PASS	-	-	-	-	-	Ins	-	I	136152467	136152474	1	60	799.781	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	11	4	11	5	23	16	23	16	11	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718475002	6	163950561	G	GA	846	PASS	QKI	CCDS43525.1	r.?	-	-	Ins	intronic	I	163950561	163950570	1	72	788.944	-	-	8	1	1	QKI|CCDS43525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	QKI|CCDS43525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	13	12	0	0	./.	8	7	12	11	32	21	32	21	12	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718477942	7	2518619	TCTC	T	536	PASS	ENSG00000230059	ENST00000432223	r.?	-	-	Del	intronic	D	2518619	2518625	3	40	592.229	-	-	1	1	1	ENSG00000230059|ENST00000432223|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000230059|ENST00000432223|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	4	7	6	9	19	13	19	13	6	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718479296	7	5679039	CT	C	300	PASS	RNF216	CCDS34595.1	r.?	-	-	Del	intronic	D	5679039	5679049	1	6	268.538	-	-	9	1	1	RNF216|CCDS34595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF216|CCDS34595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	0	5	0	5	24	19	24	19	0	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718483696	7	18002585	ATCCTGTTTTTTGAAGGGAAAAGACAACTGCGGGTGAGGGCGGAACACTTGAGCAGGGACAG	A	290	PASS	-	-	-	-	-	Del	-	D	18002585	18002647	61	27	539.484	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	8	2	0	0	16	10	24	12	8	2	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718493722	7	48297530	A	AT	660	PASS	ABCA13	CCDS47584.1	r.?	-	-	Ins	intronic	I	48297530	48297539	1	40	586.81	-	-	8	1	1	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	7	4	15	5	46	22	46	22	15	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718500328	7	67218960	CCTTTCTTGCTTACAGGCTGGGG	C	336	PASS	-	-	-	-	-	Del	-	D	67218960	67218984	22	49	645.575	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	6	6	6	19	18	19	18	6	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718505956	7	82623253	TA	T	720	PASS	PCLO	CCDS47630.1	r.?	-	-	Del	intronic	D	82623253	82623257	1	49	647.381	-	-	3	1	1	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	6	7	9	23	21	23	21	7	9	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718515547	7	111560142	CAG	C	600	PASS	DOCK4	CCDS47688.1	r.?	-	-	Del	intronic	D	111560142	111560149	2	32	539.484	-	-	3	1	1	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	3	7	5	7	25	19	25	19	5	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718517751	7	120339170	TA	T	906	PASS	KCND2	CCDS5776.1	r.?	-	-	Del	intronic	D	120339170	120339177	1	80	858.96	-	-	6	1	1	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	7	9	8	10	20	31	20	31	8	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718525370	7	140795791	TAACGTAGGCA	T	261	PASS	-	-	-	-	-	Del	-	D	140795791	140795803	10	28	485.536	-	-	1	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	6	3	6	4	14	15	14	15	6	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718525693	7	141929748	TGAG	T	269	PASS	-	-	-	-	-	Del	-	D	141929748	141929755	3	12	269.14	-	-	2	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	2	3	4	3	21	13	21	13	4	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718525844	7	142394773	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	142394773	142394783	1	14	372.22	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	10	13	0	0	./.	1	6	2	7	22	34	22	34	2	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718528852	7	151232746	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	151232746	151232750	1	10	265.528	-	-	3	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	4	1	7	21	42	21	42	1	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718529189	7	151987160	CA	C	720	PASS	BAGE3	CCDS5931.1	r.?	-	-	Del	intronic	D	151987160	151987166	1	33	646.177	-	-	5	1	-	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	2	10	2	17	7	49	7	49	2	17	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718529907	7	153496378	T	TA	1049	PASS	-	-	-	-	-	Ins	-	I	153496378	153496379	1	99	960.235	-	-	0	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	10	8	11	11	24	34	24	35	11	11	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718533862	8	4864133	TAGA	T	538	PASS	-	-	-	-	-	Del	-	D	4864133	4864139	3	35	535.513	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	6	5	6	23	30	23	30	5	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718538217	8	15757698	AG	A	300	PASS	-	-	-	-	-	Del	-	D	15757698	15757700	1	12	269.864	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	2	3	28	24	28	24	2	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718543566	8	29342641	GT	G	540	PASS	-	-	-	-	-	Del	-	D	29342641	29342645	1	28	485.755	-	-	3	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	3	7	4	22	23	22	23	7	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718545933	8	35503893	A	AG	480	PASS	UNC5D	CCDS6093.2	r.?	-	-	Ins	intronic	I	35503893	35503894	1	25	426.965	-	-	0	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	4	4	5	6	23	25	24	25	5	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718548904	8	48059405	GCTTCTGACCAAGGTCTAATAGC	G	261	PASS	-	-	-	-	-	Del	-	D	48059405	48059429	22	24	479.734	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	7	2	4	25	22	25	25	2	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718549108	8	48785627	C	CA	660	PASS	PRKDC	ENST00000314191	r.?	-	-	Ins	intronic	I	48785627	48785634	1	42	587.077	-	-	6	1	1	PRKDC|ENST00000314191|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKDC|ENST00000314191|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	6	11	7	34	27	34	27	11	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718557755	8	75745920	ACTCT	A	269	PASS	PI15	CCDS6218.1	r.?	-	-	Del	intronic	D	75745920	75745928	4	12	269.864	-	-	3	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	2	4	27	32	27	32	2	4	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718560200	8	84224624	TC	T	809	PASS	-	-	-	-	-	Del	-	D	84224624	84224626	1	64	744.781	-	-	1	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	7	7	9	10	21	34	21	34	9	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718560249	8	84372821	TC	T	300	PASS	-	-	-	-	-	Del	-	D	84372821	84372829	1	12	260.833	-	-	7	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	5	3	38	21	38	21	5	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718560456	8	85003741	CT	C	480	PASS	-	-	-	-	-	Del	-	D	85003741	85003743	1	25	431.18	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	4	7	7	26	28	26	28	7	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718561058	8	87437732	CT	C	660	PASS	WWP1	CCDS6242.1	r.?	-	-	Del	intronic	D	87437732	87437734	1	42	593.7	-	-	1	1	1	WWP1|CCDS6242.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWP1|CCDS6242.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	6	5	10	6	38	24	38	24	10	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718562324	8	91492797	TG	T	360	PASS	-	-	-	-	-	Del	-	D	91492797	91492803	1	16	323.836	-	-	5	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	6	3	31	40	31	40	6	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718570674	8	116572249	CTT	C	1349	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116572249	116572253	2	150	1240.17	-	-	3	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	9	14	13	16	30	38	30	38	13	16	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718570704	8	116629870	ACT	A	360	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116629870	116629873	2	15	323.836	-	-	1	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	4	2	6	3	34	34	34	34	6	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718577164	8	135531596	GT	G	420	PASS	ZFAT	CCDS47924.1	r.?	-	-	Del	intronic	D	135531596	135531600	1	20	377.809	-	-	3	1	1	ZFAT|CCDS47924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFAT|CCDS47924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	3	4	6	8	25	25	25	25	6	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718584904	9	13781327	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	13781327	13781335	1	42	589.13	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	6	7	7	17	26	17	27	7	7	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718588150	9	24968744	AC	A	960	PASS	-	-	-	-	-	Del	-	D	24968744	24968746	1	80	865.345	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	9	7	12	12	18	24	18	24	12	12	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718603658	9	96787733	G	GT	416	PASS	-	-	-	-	-	Ins	-	I	96787733	96787740	1	27	534.368	-	-	6	1	1	-	-	./.	0	0	0	0	12	15	13	15	0	0	./.	2	8	4	8	15	25	15	25	4	8	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718616603	9	139332444	G	GA	807	PASS	INPP5E	CCDS7000.1	r.?	-	-	Ins	intronic	I	139332444	139332452	1	70	789.511	-	-	7	1	1	INPP5E|CCDS7000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INPP5E|CCDS7000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	9	6	14	10	23	18	23	18	14	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718624742	X	35915235	CT	C	989	PASS	-	-	-	-	-	Del	-	D	35915235	35915240	1	60	920.956	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	14	3	20	5	27	19	27	19	20	5	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718626866	X	47252417	GGT	G	689	PASS	ZNF157	CCDS14278.1	r.?	-	-	Del	intronic	D	47252417	47252421	2	45	642.862	-	-	1	1	1	ZNF157|CCDS14278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF157|CCDS14278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	8	4	10	6	22	22	22	22	10	6	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718629064	X	62172801	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	62172801	62172811	1	16	321.431	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	3	7	3	24	11	24	11	7	3	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718629389	X	65127181	AT	A	660	PASS	-	-	-	-	-	Del	-	D	65127181	65127185	1	30	595.913	-	-	3	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	2	9	5	14	14	17	14	17	5	14	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718630938	X	72950470	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	72950470	72950477	1	50	696.434	-	-	6	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	9	6	14	16	23	16	23	6	14	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718635686	X	94904205	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	94904205	94904215	1	70	798.761	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	14	9	0	0	./.	6	9	9	10	21	27	21	27	9	10	1	1	1	1	1	1	1	1
2662690	PD14447a	PD14447b	2718643915	X	135752630	A	AG	720	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Ins	intronic	I	135752630	135752634	1	49	642.862	-	-	3	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	6	6	9	7	17	13	17	13	9	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668936728	1	21928431	GTCTTGTGGGC	G	377	PASS	RAP1GAP	CCDS218.1	r.?	-	-	Del	intronic	D	21928431	21928444	10	50	697.141	-	-	1	1	1	RAP1GAP|CCDS218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAP1GAP|CCDS218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	4	9	4	9	13	23	13	24	4	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668937646	1	24257937	T	TC	720	PASS	-	-	-	-	-	Ins	-	I	24257937	24257939	1	45	637.355	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	8	4	12	5	12	9	12	9	12	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668939228	1	30385511	ACATTT	A	569	PASS	-	-	-	-	-	Del	-	D	30385511	30385518	5	35	537.651	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	6	5	8	8	12	8	12	5	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668940548	1	35473125	GT	G	600	PASS	ZMYM6	CCDS387.2	r.?	-	-	Del	intronic	D	35473125	35473128	1	32	535.845	-	-	2	1	1	ZMYM6|CCDS387.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZMYM6|CCDS387.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	7	5	9	21	17	21	17	5	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668953788	1	80081707	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	80081707	80081714	1	10	265.815	-	-	6	1	1	-	-	./.	0	0	0	0	19	16	20	16	0	0	./.	4	1	6	6	21	19	21	19	6	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668954046	1	80823628	TAC	T	689	PASS	-	-	-	-	-	Del	-	D	80823628	80823632	2	45	645.182	-	-	1	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	4	8	5	9	17	21	17	21	5	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668960810	1	100934838	A	AG	600	PASS	CDC14A	CCDS769.1	r.?	-	-	Ins	intronic	I	100934838	100934841	1	36	526.814	-	-	2	1	1	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	5	5	9	7	20	24	20	25	9	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668965164	1	114072582	C	CT	660	PASS	MAGI3	CCDS860.1	r.?	-	-	Ins	intronic	I	114072582	114072588	1	40	584.794	-	-	5	1	1	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	4	12	7	29	24	29	24	12	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668975855	1	160557287	C	CA	509	PASS	-	-	-	-	-	Ins	-	I	160557287	160557297	1	30	467.029	-	-	9	1	-	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	4	10	8	28	26	28	27	10	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668978093	1	167978812	TTC	T	449	PASS	DCAF6	CCDS1267.2	r.?	-	-	Del	intronic	D	167978812	167978820	2	24	427.713	-	-	3	1	1	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	3	7	6	18	24	18	24	7	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2668995642	1	220081514	CAGGAGTTCAAGACCATTGGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAGAAAACTTAGCCTGGCATGGTGGCCTGTCCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAAGAGAATGGCTTGAACTTGGGAGGCGAAAGTTGCAGTGAGCCAAGATTGGGCCACTGCACTGCAGCCTGGGAACAGAGCCATATTTGATTGGCCAAAACTCGGTGACTGGCGCAAGTGTGGGCTACAATCTGGTTCCACTTCCACTAGCTATAGTTCATGATGTACAGGGAAACCTTTAGGCTGAAGTTAAATATGTAAGGAGGCAGCTTTAGGCTAAACTTGACTTAACAACAGTGAGTCCTTCTCTGATGGAGCTCAGCATCCTGGGCAGGACTGGAGATGCTAGTGGCTCAGTGCGTGTCAGGTGAAACGCTCTGTACAGAGCAACATAGAGCAGCTGAGGAAGATTTTTGGAGAAAATTGTCTTCTGAAAATATTCTATTCTTGGCATTTCCCCAATTTGCCCTCTCACACTCCTCCCACCAAAGCTTTAAGGGCAATTGCCTAAAGAATTAAAACTAAGCTCTCAATTCAGAAGGTCCTTTCCCCTCTTTCTCCACTCGCTGAACCACTCCAGGGCTGATTTCAAATGCCAGCTCTCCTGTGAAGCTGTCTTTGACTCTTCATTCTTTCTTCTTCACTTTCACCCTGTTGCTTATACTACCATTTAGTGCTGTTTAGCATTGATGTTTAATTAATTGACAAAATGGAGTTACCTAGATGGCAGGAGGCAGGATAAGAACAGGAAAAATATGAATGCCAGATTGAAAGTGTGAAAGAATAAGATCCATTGACATTTAAATCTGTTCTCATATGCATCATCTCCTTTAATTCCTACAACGCTGTGGT	C	261	PASS	-	-	-	-	-	Del	-	D	220081514	220082426	908	30	483.886	-	-	1	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	4	0	0	8	10	13	14	5	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669006723	1	248822424	T	TA	478	PASS	-	-	-	-	-	Ins	-	I	248822424	248822426	1	42	584.794	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	6	5	9	6	17	16	17	16	9	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669015807	10	22597241	T	TA	480	PASS	ENSG00000224369	ENST00000412505	r.?	-	-	Ins	intronic	I	22597241	22597248	1	21	426.814	-	-	6	1	1	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	2	6	5	6	28	16	28	16	5	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669016001	10	23333328	AAAGAATAGTTCAC	A	377	PASS	-	-	-	-	-	Del	-	D	23333328	23333344	13	50	700.798	-	-	1	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	9	4	8	1	28	13	29	16	9	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669021266	10	36568916	AT	A	720	PASS	-	-	-	-	-	Del	-	D	36568916	36568922	1	48	645.64	-	-	5	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	5	7	8	11	22	25	22	25	8	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669021593	10	37513530	GTGCCTTTGAAGCCCCCAAGACGGC	G	377	PASS	ANKRD30A	CCDS7193.1	r.?	-	-	Del	intronic	D	37513530	37513558	24	56	701.4	-	-	1	1	1	ANKRD30A|CCDS7193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD30A|CCDS7193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	7	6	6	6	17	22	18	22	7	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669021649	10	37736581	CATCTT	C	778	PASS	-	-	-	-	-	Del	-	D	37736581	37736589	5	60	754.752	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	9	5	11	6	33	19	33	19	11	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669027589	10	56809186	G	GA	540	PASS	PCDH15	ENST00000373957	r.?	-	-	Ins	intronic	I	56809186	56809195	1	28	478.36	-	-	8	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	3	6	5	10	17	24	18	25	5	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669030056	10	63198444	TAAAC	T	329	PASS	TMEM26	CCDS41530.1	r.?	-	-	Del	intronic	D	63198444	63198457	4	12	323.723	-	-	3	1	1	TMEM26|CCDS41530.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM26|CCDS41530.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	1	5	1	15	12	15	12	5	1	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669032733	10	70508950	TAGATCCCCCATCCCGATTTTCAGGAAGAAATGAC	T	319	PASS	CCAR1	CCDS7282.1	r.1004_1037del34	c.885_918del34	p.D296fs*65	Del	frameshift	D	70508950	70508988	34	42	593.492	-	-	1	1	1	CCAR1|CCDS7282.1|r.1004_1037del34|c.885_918del34|p.D296fs*65|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CCAR1|CCDS7282.1|r.1004_1037del34|c.885_918del34|p.D296fs*65|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	10	10	10	0	0	./.	5	6	3	4	29	17	31	19	5	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669035070	10	77249041	T	TG	329	PASS	C10orf11	ENST00000354343	r.?	-	-	Ins	intronic	I	77249041	77249043	1	15	320.111	-	-	1	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	7	24	7	0	0	./.	4	2	8	8	24	20	24	20	8	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669037394	10	85368193	CTTAA	C	478	PASS	-	-	-	-	-	Del	-	D	85368193	85368200	4	28	485.585	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	3	6	3	6	19	15	19	15	3	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669046642	10	120253510	GGT	G	960	PASS	-	-	-	-	-	Del	-	D	120253510	120253514	2	80	862.66	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	9	7	9	9	11	15	11	15	9	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669059145	11	23109727	G	GA	1080	PASS	-	-	-	-	-	Ins	-	I	23109727	23109734	1	91	961.374	-	-	6	1	1	-	-	./.	0	0	0	0	16	19	16	20	0	0	./.	12	6	15	8	29	19	29	19	15	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669061716	11	29926497	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	29926497	29926507	1	6	266.446	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	0	5	8	7	23	17	23	18	8	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669064471	11	38733395	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	38733395	38733402	1	48	640.916	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	7	6	10	15	33	15	33	6	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669064864	11	39603864	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	39603864	39603868	1	30	480.687	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	4	10	9	20	19	20	19	10	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669072302	11	66448703	ATCC	A	1049	PASS	SPTBN2	CCDS8150.1	r.?	-	-	Del	downstream	D	66448703	66448711	3	100	971.609	-	-	2	1	1	SPTBN2|CCDS8150.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RBM4B|CCDS8149.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	9	10	9	0	0	./.	9	9	13	10	23	24	23	24	13	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669074627	11	69709680	GTC	G	540	PASS	-	-	-	-	-	Del	-	D	69709680	69709700	2	30	486.105	-	-	9	1	-	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	4	5	8	7	196	169	196	169	8	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669075424	11	70547272	CGT	C	420	PASS	SHANK2	ENST00000338508	r.?	-	-	Del	intronic	D	70547272	70547289	2	20	378.082	-	-	8	1	-	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	3	4	4	8	139	157	139	157	4	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669078313	11	76772773	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	76772773	76772775	1	15	306.009	-	-	1	1	-	-	-	./.	0	0	0	0	12	6	13	6	0	0	./.	2	4	8	12	141	195	144	197	8	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669083476	11	97183441	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	97183441	97183450	1	16	319.856	-	-	8	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	4	4	6	9	6	9	4	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669108000	12	42785430	G	GA	720	PASS	PPHLN1	CCDS31777.1	r.?	-	-	Ins	intronic	I	42785430	42785440	1	49	641.068	-	-	9	1	1	PPHLN1|CCDS31777.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPHLN1|CCDS31777.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	6	6	10	8	26	29	27	30	10	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669115251	12	63574886	GT	G	629	PASS	-	-	-	-	-	Del	-	D	63574886	63574891	1	42	593.666	-	-	4	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	5	6	8	8	20	19	20	19	8	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669115874	12	65187941	A	AT	660	PASS	TBC1D30	ENST00000229088	r.?	-	-	Ins	intronic	I	65187941	65187950	1	40	587.646	-	-	8	1	1	TBC1D30|ENST00000229088|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D30|ENST00000229088|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	7	4	9	4	23	20	23	20	9	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669116908	12	68473961	AG	A	540	PASS	-	-	-	-	-	Del	-	D	68473961	68473964	1	18	486.22	-	-	2	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	8	1	10	3	16	14	16	14	10	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669122091	12	85098808	CA	C	720	PASS	-	-	-	-	-	Del	-	D	85098808	85098813	1	48	646.487	-	-	4	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	7	9	8	17	12	17	12	9	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669125880	12	96603750	AG	A	780	PASS	ELK3	CCDS9060.1	r.?	-	-	Del	intronic	D	96603750	96603753	1	54	698.103	-	-	2	1	1	ELK3|CCDS9060.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ELK3|CCDS9060.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	8	5	9	7	23	17	23	17	9	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669130811	12	110839313	AAGG	A	389	PASS	ANAPC7	CCDS9145.2	r.?	-	-	Del	intronic	D	110839313	110839323	3	20	377.569	-	-	3	1	1	ANAPC7|CCDS9145.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANAPC7|CCDS9145.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	3	4	5	6	11	21	11	21	5	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669138074	12	128793445	CATAG	C	834	PASS	-	-	-	-	-	Del	-	D	128793445	128793451	4	90	918.415	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	8	9	8	12	20	28	20	28	8	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669166161	14	21731027	T	TA	660	PASS	HNRNPC	CCDS41915.1	r.?	-	-	Ins	intronic	I	21731027	21731035	1	42	589.594	-	-	7	1	1	HNRNPC|CCDS41915.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HNRNPC|CCDS41915.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	6	5	16	12	32	38	32	38	16	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669172423	14	38517539	CA	C	1080	PASS	-	-	-	-	-	Del	-	D	38517539	38517546	1	91	975.626	-	-	6	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	12	6	13	7	27	18	27	18	13	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669190411	14	90479022	AC	A	569	PASS	TDP1	CCDS9888.1	r.?	-	-	Del	intronic	D	90479022	90479028	1	27	542.015	-	-	5	1	1	TDP1|CCDS9888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TDP1|CCDS9888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	8	2	9	5	28	15	28	15	9	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669190620	14	90882735	T	TA	507	PASS	-	-	-	-	-	Ins	-	I	90882735	90882744	1	32	530.576	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	13	16	0	0	./.	3	7	4	8	23	19	24	19	4	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669193221	14	98217247	G	GC	600	PASS	-	-	-	-	-	Ins	-	I	98217247	98217249	1	27	535.994	-	-	1	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	8	2	9	6	27	17	28	17	9	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669198393	15	23840566	ATCT	A	958	PASS	-	-	-	-	-	Del	-	D	23840566	23840575	3	84	922.017	-	-	2	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	6	11	8	13	28	34	28	34	8	13	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669210396	15	58254902	C	CA	780	PASS	ALDH1A2	CCDS10163.1	r.?	-	-	Ins	intronic	I	58254902	58254912	1	56	697.245	-	-	9	1	1	ALDH1A2|CCDS10163.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALDH1A2|CCDS10163.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	7	6	8	8	26	25	27	25	8	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669228677	16	7066716	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	7066716	7066723	1	30	482.746	-	-	6	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	4	8	9	21	18	21	19	8	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669238397	16	32095639	T	TC	271	PASS	-	-	-	-	-	Ins	-	I	32095639	32095642	1	20	375.469	-	-	2	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	3	4	4	4	21	39	21	39	4	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669244135	16	59148267	GAACA	GTT	658	PASS	-	-	-	-	-	Complex	-	DI	59148268	59148271	4	40	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	9	0	0	9	12	9	12	3	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669246128	16	68857486	TCCTGC	T	679	PASS	CDH1	CCDS10869.1	r.2313_2317delCCUGC	c.2122_2126delCCTGC	p.P708fs*38	Del	frameshift	D	68857486	68857493	5	88	921.487	-	-	1	1	1	CDH1|CCDS10869.1|r.2313_2317delCCUGC|c.2122_2126delCCTGC|p.P708fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CDH1|CCDS10869.1|r.2313_2317delCCUGC|c.2122_2126delCCTGC|p.P708fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	16	13	16	13	0	0	./.	7	10	7	11	10	14	10	15	7	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669246717	16	71064285	C	CAT	420	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Ins	intronic	I	71064285	71064294	2	20	371.255	-	-	4	1	-	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	33	28	35	0	0	./.	4	3	8	6	37	36	41	40	8	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669248225	16	76826443	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	76826443	76826451	1	16	321.831	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	4	9	5	9	5	4	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669263539	17	29207741	ATG	A	660	PASS	ATAD5	CCDS11260.1	r.?	-	-	Del	intronic	D	29207741	29207747	2	40	596.011	-	-	2	1	1	ATAD5|CCDS11260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATAD5|CCDS11260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	7	4	12	8	29	24	29	24	12	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669265340	17	34966198	CTGGATTGT	C	319	PASS	MRM1	CCDS32631.1	r.?	-	-	Del	downstream	D	34966198	34966210	8	40	595.409	-	-	1	1	1	MRM1|CCDS32631.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MRM1|CCDS32631.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	6	12	6	0	0	./.	4	7	0	0	17	18	17	19	4	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669267044	17	38872757	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	38872757	38872767	1	63	750.131	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	8	6	10	10	17	26	17	26	10	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669267288	17	39682630	A	ACG	300	PASS	KRT15	CCDS11398.1	r.?	-	-	Ins	upstream	I	39682630	39682634	2	10	264.292	-	-	1	1	1	KRT15|CCDS11398.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	KRT19|CCDS11399.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	16	8	16	0	0	./.	4	1	6	5	13	15	13	15	6	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669267657	17	40543896	TACTGTAGT	TCATAG	493	PASS	STAT3	CCDS32657.1	r.?	-	-	Complex	upstream	DI	40543897	40543904	8	78	0	-	-	0	1	1	STAT3|CCDS32657.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	STAT3|CCDS32657.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	10	13	10	13	0	0	./.	12	5	0	0	25	12	25	12	12	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669268040	17	41323824	C	CCA	300	PASS	NBR1	CCDS45694.1	r.?	-	-	Ins	intronic	I	41323824	41323830	2	12	264.894	-	-	2	1	1	NBR1|CCDS45694.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NBR1|CCDS45694.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	15	11	0	0	./.	3	2	6	6	14	16	15	16	6	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669274078	17	57142132	TGTG	T	449	PASS	TRIM37	CCDS32694.1	r.?	-	-	Del	intronic	D	57142132	57142142	3	24	433.463	-	-	3	1	1	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	5	6	10	22	19	23	19	7	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669277185	17	65358364	CTTAATTT	C	334	PASS	PSMD12	CCDS11669.1	r.?	-	-	Del	intronic	D	65358364	65358376	7	49	650.194	-	-	1	1	1	PSMD12|CCDS11669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMD12|CCDS11669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	6	6	5	7	12	15	13	15	6	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669280054	17	72425371	CT	C	720	PASS	GPRC5C	CCDS11699.1	r.?	-	-	Del	upstream	D	72425371	72425381	1	48	650.194	-	-	9	1	1	GPRC5C|CCDS11699.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GPRC5C|CCDS11699.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	17	14	17	0	0	./.	5	7	8	9	18	31	18	31	8	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669288236	18	10522144	G	GA	300	PASS	NAPG	CCDS45827.1	r.?	-	-	Ins	upstream	I	10522144	10522154	1	12	263.942	-	-	9	1	1	NAPG|CCDS45827.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	NAPG|CCDS45827.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	19	11	19	0	0	./.	2	3	2	3	30	27	30	28	2	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669293722	18	27881109	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	27881109	27881116	1	15	321.185	-	-	6	1	1	-	-	./.	0	0	0	0	20	11	20	12	0	0	./.	2	4	8	7	24	24	24	24	8	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669300441	18	50298209	GGT	G	480	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50298209	50298216	2	21	430.856	-	-	3	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	2	10	7	22	19	22	19	10	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669310594	19	884960	A	ACCAGCACT	870	PASS	MED16	CCDS12047.1	r.1078_1079insagugcugg	c.927_928insAGTGCTGG	p.L311fs*11	Ins	frameshift	I	884960	884972	8	252	1471.25	-	-	1	1	1	MED16|CCDS12047.1|r.1078_1079insagugcugg|c.927_928insAGTGCTGG|p.L311fs*11|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MED16|CCDS12047.1|r.1078_1079insagugcugg|c.927_928insAGTGCTGG|p.L311fs*11|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	9	8	9	8	0	0	./.	13	17	11	17	24	25	28	27	14	18	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669315480	19	9209497	C	CA	449	PASS	OR7G2	CCDS32897.1	r.?	-	-	Ins	downstream	I	9209497	9209507	1	25	428.457	-	-	9	1	1	OR7G2|CCDS32897.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	OR7G2|CCDS32897.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	16	7	16	0	0	./.	4	4	7	7	26	38	26	39	7	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669320134	19	16854908	AGTAAATTGTGGCTGGGGACAGTGGCTCACGACAGTAATCCCAGCACTTTGTGAGGCTGAGATGAGAGGATCCCTTGAGTACAGGAGTTCAATACCAGCCCGGGTAATGTAGTGAGACCCTATCTGTACCGAAAATAAAAACTTAAAAATTAGCTGGGTATGGTGGCATGTGATTGTGGTCCAAGTGGGAGGATCACTTAAACCCAGGAGGTTGAGGCTGCAGTGAGCCATGGTTGTACCACCGCACTCCAGCCTGGGCGACAGAGCAAGACCTTGTCTGAAGAAAAAAAGTGAGATTTGAATCTGTGACTTCCTCTCTGCCAGGCCCTCATCGGTGATCAGTACGGCCCCTGTCTGATTCCCTCGCGGATCGATGAGAAGGAGTGGGAGGTATTGAGGGACCATCTGACTGCCAGGCCAAGTGACCTGGAGCTGGTGGCACGATACTTCCAGAGGGACGAGAATGCGTTTCCTCCCACCTACGTCCTGCAGGCACCAGGTACTGGGGAGGCCTGTGAACCAGAGGAGGCCACCTTAACTTCTGTCCTACGCTCTGGAGCCCAGGAGGCCCGGAGGCTGGGGCTCATCACCCAGGAGCAGTGGCAGCACTACCACCGGTCAGGTGAGGCCGCAGGGACTCCCCTCTGGAGACCCACAAGAAACTGACCACGTGTTCAGAATATCCATCCCCTGTTGGCAAAAATGCAACAGTCTGCATTTCTTGCAAATGCCAAACCAGTCAACCTCTGGTCCCTCGGCTCTGAGAAAGGCTGTTTTACTGATCCAAGATAGTTCAGCCATGTTCCTGATCAATCTTGGTCTCAGGATCTTCCTCTCCTCGCTGGCTCTTTCTTCTTGTCTCCCAGGGAGGTTCCTGGCACAGGGGCCGTATTAGTCTGTTCTCATGCCACTAATAAAGGCATACTT	A	537	PASS	NWD1	CCDS32945.1	r.840-323_1442del926	c.?	p.?	Del	5'UTR ess splice	D	16854908	16855836	926	110	1027.82	-	-	1	1	1	NWD1|CCDS32945.1|r.840-323_1442del926|c.?|p.?|protein_coding:five_prime_UTR:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:5_prime_UTR_variant:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000204:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001623:SO:0001577:SO:0001576	NWD1|ENST00000438489|r.207-323_504+305del926|c.199-323_496+305del926|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	9	7	9	7	0	0	./.	10	9	0	0	13	5	23	14	10	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669328120	19	35482164	A	AC	600	PASS	-	-	-	-	-	Ins	-	I	35482164	35482166	1	35	534.367	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	6	7	10	31	29	32	29	7	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669346639	2	18211035	A	AT	809	PASS	-	-	-	-	-	Ins	-	I	18211035	18211043	1	63	741.517	-	-	7	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	8	6	9	10	30	24	30	24	9	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669348389	2	24201181	ACT	A	833	PASS	UBXN2A	CCDS1704.1	r.?	-	-	Del	intronic	D	24201181	24201186	2	60	805.534	-	-	2	1	1	UBXN2A|CCDS1704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBXN2A|CCDS1704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	11	4	15	6	33	17	33	17	15	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669348415	2	24234018	GCCCGGAGCCGCCCCT	G	327	PASS	MFSD2B	CCDS46228.1	r.?	-	-	Del	intronic	D	24234018	24234037	15	42	591.608	-	-	1	1	1	MFSD2B|CCDS46228.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MFSD2B|CCDS46228.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	6	5	5	5	19	13	20	13	6	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669359435	2	55291675	TGG	T	776	PASS	RTN4	ENST00000427710	r.?	-	-	Del	intronic	D	55291675	55291680	2	70	805.534	-	-	4	1	1	RTN4|ENST00000427710|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RTN4|ENST00000427710|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	9	6	12	7	28	21	28	21	12	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669363075	2	66376529	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	66376529	66376538	1	42	584.985	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	6	5	7	8	22	22	22	22	7	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669367525	2	80219424	CA	C	360	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80219424	80219434	1	15	320.287	-	-	9	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	4	2	11	6	29	20	29	20	11	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669367544	2	80285194	G	GT	780	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	80285194	80285196	1	56	691.347	-	-	1	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	7	7	7	21	13	21	13	7	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669374229	2	104887753	GATCC	G	300	PASS	-	-	-	-	-	Del	-	D	104887753	104887759	4	10	268.913	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	1	4	2	4	19	12	19	12	2	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669374763	2	106533624	GA	G	720	PASS	-	-	-	-	-	Del	-	D	106533624	106533629	1	45	645.391	-	-	4	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	4	8	5	10	17	22	17	22	5	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669378823	2	119871425	TCACTTCTTTTACC	T	319	PASS	-	-	-	-	-	Del	-	D	119871425	119871443	13	42	587.996	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	6	5	7	18	14	18	15	5	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669383752	2	133719002	T	TA	478	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Ins	intronic	I	133719002	133719005	1	24	477.42	-	-	2	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	2	7	4	9	17	16	17	17	4	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669387388	2	145074188	AAT	A	780	PASS	GTDC1	ENST00000417450	r.?	-	-	Del	intronic	D	145074188	145074192	2	54	699.173	-	-	1	1	1	GTDC1|ENST00000417450|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GTDC1|ENST00000417450|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	8	5	12	8	35	28	35	28	12	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669392266	2	160447795	CT	C	660	PASS	BAZ2B	CCDS2209.2	r.?	-	-	Del	intronic	D	160447795	160447803	1	42	591.608	-	-	7	1	1	BAZ2B|CCDS2209.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BAZ2B|CCDS2209.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	6	7	6	25	22	25	22	7	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669402634	2	191752152	GT	G	929	PASS	GLS	CCDS2308.1	r.?	-	-	Del	intronic	D	191752152	191752156	1	80	860.521	-	-	3	1	1	GLS|CCDS2308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLS|CCDS2308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	9	7	13	12	27	25	27	25	13	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669407597	2	206110927	A	AT	360	PASS	PARD3B	CCDS42806.1	r.?	-	-	Ins	intronic	I	206110927	206110935	1	16	319.083	-	-	7	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	19	14	0	0	./.	3	3	7	5	21	20	21	20	7	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669410580	2	214962418	T	TA	720	PASS	SPAG16	CCDS2396.1	r.?	-	-	Ins	intronic	I	214962418	214962424	1	48	638.166	-	-	5	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	7	6	11	15	23	16	23	6	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669412188	2	219404743	CT	C	420	PASS	USP37	CCDS2418.1	r.?	-	-	Del	intronic	D	219404743	219404753	1	20	372.866	-	-	9	1	1	USP37|CCDS2418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP37|CCDS2418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	7	6	21	22	21	22	7	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669415987	2	229589108	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	229589108	229589116	1	40	638.166	-	-	7	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	3	9	4	11	17	23	18	23	4	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669419570	2	239989657	CT	C	720	PASS	HDAC4	CCDS2529.1	r.?	-	-	Del	intronic	D	239989657	239989660	1	40	645.391	-	-	2	1	1	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDAC4|CCDS2529.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	9	3	10	13	17	13	17	3	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669425892	20	15097642	A	AT	689	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	15097642	15097651	1	49	645.082	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	6	6	12	8	26	21	26	21	12	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669432833	20	34845156	CTG	C	960	PASS	C20orf4	CCDS13273.1	r.?	-	-	Del	downstream	D	34845156	34845160	2	80	867.936	-	-	1	1	1	C20orf4|CCDS13273.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C20orf4|ENST00000397286|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	7	9	11	11	23	23	23	23	11	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669435330	20	43528864	T	TG	420	PASS	YWHAB	CCDS13339.1	r.?	-	-	Ins	intronic	I	43528864	43528865	1	14	376.298	-	-	0	1	1	YWHAB|CCDS13339.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	YWHAB|CCDS13339.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	18	6	18	0	0	./.	1	6	2	12	8	30	9	30	2	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669449121	21	23734594	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	23734594	23734603	1	12	322.801	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	1	9	4	33	28	33	28	9	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669462622	22	24413426	TTGTTTTTCTG	T	472	PASS	CABIN1	CCDS13823.1	r.?	-	-	Del	intronic	D	24413426	24413438	10	65	869.013	-	-	1	1	1	CABIN1|CCDS13823.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CABIN1|CCDS13823.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	25	12	25	0	0	./.	4	12	4	11	11	31	11	32	4	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669479570	3	20072918	T	TTTTC	265	PASS	-	-	-	-	-	Ins	-	I	20072918	20072922	4	14	357.881	-	-	0	1	1	-	-	./.	0	0	0	0	10	23	10	24	0	0	./.	6	1	0	1	30	19	30	19	6	2	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669483236	3	31511353	C	CA	1080	PASS	-	-	-	-	-	Ins	-	I	31511353	31511359	1	96	957.766	-	-	5	1	1	-	-	./.	0	0	0	0	17	14	18	14	0	0	./.	7	11	7	13	23	23	23	23	7	13	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669483649	3	32542055	TATTTTTTCTCCATTTCTTCTTATGAATGATGGAGAACTAATAATAGTCTAACG	T	261	PASS	CMTM6	CCDS2653.1	r.?	-	-	Del	intronic	D	32542055	32542111	53	30	484.904	-	-	1	1	1	CMTM6|CCDS2653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CMTM6|CCDS2653.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	4	5	1	1	16	11	19	15	4	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669484739	3	36140693	CT	C	485	PASS	-	-	-	-	-	Del	-	D	36140693	36140702	1	24	484.904	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	7	5	11	23	21	23	21	5	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669493395	3	61818357	C	CT	720	PASS	PTPRG	CCDS2895.1	r.?	-	-	Ins	intronic	I	61818357	61818364	1	45	639.314	-	-	6	1	1	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	21	17	21	0	0	./.	4	8	8	13	24	39	24	39	8	13	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669494010	3	63668566	T	TG	480	PASS	SNTN	ENST00000496807	r.?	-	-	Ins	downstream	I	63668566	63668572	1	25	426.209	-	-	5	1	1	SNTN|ENST00000496807|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SNTN|ENST00000496807|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	9	7	10	0	0	./.	4	4	5	5	13	12	13	12	5	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669496670	3	72160285	G	GT	1080	PASS	-	-	-	-	-	Ins	-	I	72160285	72160292	1	99	955.96	-	-	6	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	10	8	15	10	35	20	35	20	15	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669506966	3	104923353	AC	A	960	PASS	-	-	-	-	-	Del	-	D	104923353	104923356	1	77	862.051	-	-	2	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	10	6	16	9	23	23	23	23	16	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669514077	3	126093808	GGGTTTTGAGCAGAGAGATGACGT	G	377	PASS	-	-	-	-	-	Del	-	D	126093808	126093835	23	54	695.6	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	8	5	8	17	21	17	22	5	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669520274	3	145558393	TGACTCACAGTTCTGCATAACTGAGGA	T	290	PASS	-	-	-	-	-	Del	-	D	145558393	145558423	26	35	538.782	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	6	3	6	16	19	17	19	4	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669537699	3	196828295	CGCCCA	C	300	PASS	DLG1	CCDS3327.1	r.?	-	-	Del	intronic	D	196828295	196828302	5	30	484.904	-	-	1	1	1	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	4	11	5	29	16	29	16	11	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669538672	4	1898391	G	GCCTC	300	PASS	WHSC1	CCDS3356.1	r.?	-	-	Ins	upstream	I	1898391	1898411	4	10	255.486	-	-	4	1	-	WHSC1|CCDS3356.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	WHSC1|CCDS33940.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	1	4	4	8	25	23	25	23	4	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669542971	4	14674853	G	GTA	689	PASS	-	-	-	-	-	Ins	-	I	14674853	14674857	2	48	631.349	-	-	1	1	1	-	-	./.	0	0	0	0	17	9	17	10	0	0	./.	5	7	6	9	26	20	26	20	6	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669543264	4	15812272	AAAACCAGGTTGATAATGGTTTCCTGGC	A	319	PASS	CD38	CCDS3417.1	r.?	-	-	Del	intronic	D	15812272	15812301	27	40	592.534	-	-	1	1	1	CD38|CCDS3417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD38|CCDS3417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	7	5	5	25	16	25	18	5	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669549603	4	39758322	T	TA	480	PASS	UBE2K	CCDS33976.1	r.?	-	-	Ins	intronic	I	39758322	39758325	1	24	426.118	-	-	2	1	1	UBE2K|CCDS33976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2K|CCDS33976.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	3	16	3	0	0	./.	3	5	4	5	21	16	21	16	4	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669551718	4	45345559	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	45345559	45345566	1	55	745.706	-	-	6	1	1	-	-	./.	0	0	0	0	17	12	19	12	0	0	./.	4	10	6	11	18	22	18	22	6	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669555950	4	58370220	CCTGT	C	569	PASS	-	-	-	-	-	Del	-	D	58370220	58370227	4	32	538.667	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	7	4	10	25	21	25	21	4	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669563653	4	80832951	C	CT	720	PASS	ANTXR2	CCDS47085.1	r.?	-	-	Ins	intronic	I	80832951	80832958	1	48	639.176	-	-	6	1	1	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	15	10	0	0	./.	7	5	11	6	31	29	31	29	11	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669570623	4	102656326	G	GA	300	PASS	BANK1	ENST00000504592	r.?	-	-	Ins	intronic	I	102656326	102656336	1	10	266.323	-	-	9	1	1	BANK1|ENST00000504592|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BANK1|ENST00000504592|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	24	28	24	0	0	./.	4	1	4	1	17	27	17	27	4	1	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669571359	4	105769455	AG	A	809	PASS	-	-	-	-	-	Del	-	D	105769455	105769460	1	63	754.135	-	-	4	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	6	8	8	9	22	24	22	24	8	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669575977	4	120004369	CT	C	540	PASS	-	-	-	-	-	Del	-	D	120004369	120004373	1	30	484.801	-	-	3	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	4	5	5	8	20	18	20	18	5	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669578560	4	127861432	GGC	G	1440	PASS	-	-	-	-	-	Del	-	D	127861432	127861441	2	169	1292.2	-	-	4	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	12	12	14	14	26	30	26	30	14	14	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669585320	4	148974029	A	AG	718	PASS	ARHGAP10	CCDS34075.1	r.?	-	-	Ins	intronic	I	148974029	148974032	1	56	692.441	-	-	2	1	1	ARHGAP10|CCDS34075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP10|CCDS34075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	17	13	0	0	./.	6	7	7	9	20	22	20	22	7	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669585498	4	149534747	C	CTA	360	PASS	-	-	-	-	-	Ins	-	I	149534747	149534765	2	15	311.159	-	-	8	1	1	-	-	./.	0	0	0	0	21	14	22	14	0	0	./.	2	4	2	4	17	24	17	24	2	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669589485	4	161703414	CAGAAT	C	927	PASS	-	-	-	-	-	Del	-	D	161703414	161703421	5	90	915.735	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	8	9	8	11	15	26	15	26	8	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669596100	4	180194125	TGA	T	480	PASS	-	-	-	-	-	Del	-	D	180194125	180194131	2	21	430.934	-	-	2	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	6	2	10	5	17	14	17	14	10	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669596443	4	181051503	G	GA	807	PASS	-	-	-	-	-	Ins	-	I	181051503	181051510	1	72	798.97	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	8	7	12	11	28	24	28	24	12	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669602882	5	3139434	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	3139434	3139440	2	10	262.555	-	-	2	1	-	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	1	4	1	5	23	30	23	30	1	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669603118	5	3553257	A	AT	360	PASS	ENSG00000224512	ENST00000432338	r.?	-	-	Ins	intronic	I	3553257	3553258	1	16	319.401	-	-	0	1	1	ENSG00000224512|ENST00000432338|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000224512|ENST00000432338|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	3	4	3	32	38	32	40	4	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669605655	5	10268314	C	CA	749	PASS	CCT5	CCDS3877.1	r.?	-	-	Ins	downstream	I	10268314	10268323	1	54	691.433	-	-	8	1	1	CCT5|CCDS3877.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CCT5|CCDS3877.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	8	8	8	0	0	./.	5	8	6	11	40	50	40	50	6	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669612505	5	26795269	AT	A	780	PASS	-	-	-	-	-	Del	-	D	26795269	26795271	1	56	699.862	-	-	1	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	6	7	8	8	24	32	24	32	8	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669612515	5	26829646	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	26829646	26829653	1	18	371.43	-	-	6	1	1	-	-	./.	0	0	0	0	21	12	22	12	0	0	./.	2	5	2	6	32	30	32	30	2	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669612888	5	27780312	T	TA	1140	PASS	-	-	-	-	-	Ins	-	I	27780312	27780318	1	110	1010.83	-	-	5	1	1	-	-	./.	0	0	0	0	14	13	14	14	0	0	./.	10	9	14	13	36	38	36	38	14	13	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669613777	5	29768201	G	GT	509	PASS	-	-	-	-	-	Ins	-	I	29768201	29768208	1	30	479.102	-	-	6	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	5	4	6	8	35	32	36	32	6	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669613804	5	29814951	AG	A	780	PASS	-	-	-	-	-	Del	-	D	29814951	29814954	1	50	699.26	-	-	2	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	9	6	12	17	31	17	31	6	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669615529	5	33480811	AAG	A	629	PASS	-	-	-	-	-	Del	-	D	33480811	33480816	2	22	589.181	-	-	2	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	1	10	2	13	10	38	10	38	2	13	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669618903	5	42310096	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	42310096	42310106	1	10	266.168	-	-	9	1	-	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	1	4	1	36	31	37	32	4	1	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669622889	5	56029826	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	56029826	56029828	1	20	372.635	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	6	6	26	17	26	18	6	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669624956	5	61739463	G	GA	269	PASS	IPO11	CCDS34167.1	r.?	-	-	Ins	intronic	I	61739463	61739473	1	12	255.932	-	-	9	1	1	IPO11|CCDS34167.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IPO11|CCDS34167.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	2	3	0	1	40	28	40	29	2	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669628304	5	71143142	GA	G	300	PASS	-	-	-	-	-	Del	-	D	71143142	71143145	1	12	266.77	-	-	2	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	2	3	43	35	43	35	2	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669633959	5	84621172	TA	T	329	PASS	-	-	-	-	-	Del	-	D	84621172	84621176	1	12	323.013	-	-	3	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	1	5	2	8	20	33	20	33	2	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669636414	5	91864243	AT	A	480	PASS	-	-	-	-	-	Del	-	D	91864243	91864250	1	16	430.685	-	-	6	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	1	7	5	13	20	43	20	43	5	13	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669637991	5	96828095	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	96828095	96828112	2	12	269.178	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	3	2	32	31	32	31	3	2	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669640292	5	103613109	T	TA	689	PASS	-	-	-	-	-	Ins	-	I	103613109	103613117	1	48	638.2	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	15	0	0	./.	5	7	10	15	39	33	39	35	10	15	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669640639	5	104453166	G	GC	660	PASS	-	-	-	-	-	Ins	-	I	104453166	104453168	1	42	585.568	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	20	0	0	./.	6	5	13	10	27	20	27	20	13	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669645374	5	116898453	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	116898453	116898463	1	28	479.102	-	-	9	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	6	3	7	7	39	28	39	28	7	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669645599	5	117461789	AAAG	A	538	PASS	-	-	-	-	-	Del	-	D	117461789	117461797	3	36	535.947	-	-	2	1	1	-	-	./.	0	0	0	0	17	26	17	26	0	0	./.	5	5	6	9	30	30	30	30	6	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669648578	5	125994761	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	125994761	125994768	1	12	265.565	-	-	6	1	1	-	-	./.	0	0	0	0	14	21	15	21	0	0	./.	2	3	2	4	33	48	34	48	2	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669649916	5	130221305	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	130221305	130221315	1	12	266.168	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	3	2	26	39	27	39	3	2	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669649961	5	130376223	TG	T	869	PASS	-	-	-	-	-	Del	-	D	130376223	130376225	1	66	804.523	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	5	10	9	15	34	33	34	33	9	14	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669649976	5	130438764	G	GTA	360	PASS	-	-	-	-	-	Ins	-	I	130438764	130438778	2	15	313.38	-	-	6	1	-	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	2	4	8	12	28	31	28	31	8	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669656499	5	147532168	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	147532168	147532186	2	12	269.178	-	-	8	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	2	3	21	29	21	29	2	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669665398	5	171182296	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	171182296	171182305	1	15	318.799	-	-	8	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	2	4	6	6	27	33	28	33	6	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669665494	5	171427062	CA	C	480	PASS	FBXW11	CCDS34289.1	r.?	-	-	Del	intronic	D	171427062	171427066	1	21	430.685	-	-	3	1	1	FBXW11|CCDS34289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW11|CCDS34289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	6	2	10	4	33	27	33	27	10	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669666191	5	172668690	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	172668690	172668698	1	45	636.394	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	8	8	10	36	33	38	33	8	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669670621	6	2200224	A	AG	1038	PASS	GMDS	CCDS4474.1	r.?	-	-	Ins	intronic	I	2200224	2200227	1	99	958.443	-	-	2	1	1	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	10	8	12	11	25	26	25	26	12	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669672140	6	6379824	AT	A	480	PASS	-	-	-	-	-	Del	-	D	6379824	6379830	1	25	431.326	-	-	5	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	4	4	7	5	18	20	18	20	7	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669672783	6	7631675	CTGGGT	C	1047	PASS	-	-	-	-	-	Del	-	D	7631675	7631681	5	104	1019.58	-	-	1	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	12	7	13	7	24	19	24	19	13	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669673046	6	8281559	CCA	C	360	PASS	-	-	-	-	-	Del	-	D	8281559	8281562	2	12	312.658	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	1	4	2	19	7	19	7	5	2	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669674333	6	11336963	ACTT	A	604	PASS	NEDD9	ENST00000504387	r.?	-	-	Del	intronic	D	11336963	11336972	3	45	646.989	-	-	2	1	1	NEDD9|ENST00000504387|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NEDD9|ENST00000504387|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	8	4	10	6	21	18	21	18	10	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669702177	6	88918560	CG	C	780	PASS	-	-	-	-	-	Del	-	D	88918560	88918564	1	54	700.303	-	-	3	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	8	5	11	11	24	22	24	22	11	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669724803	6	159229307	T	TA	840	PASS	EZR	CCDS5258.1	r.?	-	-	Ins	intronic	I	159229307	159229310	1	63	746.392	-	-	2	1	1	EZR|CCDS5258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EZR|CCDS5258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	13	13	0	0	./.	6	8	8	9	24	23	25	23	8	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669728384	6	169648270	TTG	T	300	PASS	THBS2	CCDS34574.1	r.?	-	-	Del	intronic	D	169648270	169648285	2	12	267.773	-	-	7	1	-	THBS2|CCDS34574.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THBS2|CCDS34574.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	2	3	2	19	26	19	26	3	2	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669730626	7	5230204	TCGG	T	564	PASS	WIPI2	CCDS5339.1	r.?	-	-	Del	intronic	D	5230204	5230213	3	36	539.416	-	-	2	1	1	WIPI2|CCDS5339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WIPI2|CCDS5339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	5	9	6	22	16	22	16	9	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669742102	7	37891630	C	CA	480	PASS	TXNDC3	CCDS5452.1	r.?	-	-	Ins	intronic	I	37891630	37891632	1	25	426.717	-	-	1	1	1	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	4	6	7	19	21	20	21	6	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669743989	7	43164428	AT	A	840	PASS	HECW1	CCDS5469.2	r.?	-	-	Del	intronic	D	43164428	43164437	1	48	755.183	-	-	8	1	1	HECW1|CCDS5469.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HECW1|CCDS5469.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	16	28	16	0	0	./.	11	3	12	4	24	17	24	17	12	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669745594	7	47953883	C	CA	660	PASS	PKD1L1	CCDS34633.1	r.?	-	-	Ins	intronic	I	47953883	47953887	1	42	586.735	-	-	3	1	1	PKD1L1|CCDS34633.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PKD1L1|CCDS34633.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	6	5	10	17	28	17	28	5	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669753213	7	68332617	G	GA	689	PASS	-	-	-	-	-	Ins	-	I	68332617	68332627	1	45	629.238	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	8	4	10	8	24	27	24	27	10	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669754169	7	70595581	TATA	T	478	PASS	WBSCR17	CCDS5540.1	r.?	-	-	Del	upstream	D	70595581	70595589	3	28	485.475	-	-	2	1	1	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	8	10	8	0	0	./.	3	6	7	6	16	20	16	20	7	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669767500	7	109412055	GT	G	937	PASS	-	-	-	-	-	Del	-	D	109412055	109412065	1	81	863.066	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	8	8	10	9	23	20	23	20	10	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669768080	7	111602916	TA	T	523	PASS	DOCK4	CCDS47688.1	r.?	-	-	Del	intronic	D	111602916	111602919	1	42	593.358	-	-	2	1	1	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	6	5	7	6	19	19	19	19	7	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669773753	7	130080615	C	CA	300	PASS	TSGA14	CCDS5821.1	r.?	-	-	Ins	intronic	I	130080615	130080618	1	10	264.892	-	-	2	1	1	TSGA14|CCDS5821.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSGA14|ENST00000469826|r.74_75insu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	14	5	14	5	0	0	./.	4	1	7	10	17	20	17	20	7	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669787228	8	10384194	TG	T	780	PASS	ENSG00000184647	CCDS5976.1	r.?	-	-	Del	intronic	D	10384194	10384200	1	56	699.281	-	-	5	1	1	ENSG00000184647|CCDS5976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000184647|CCDS5976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	7	6	9	7	10	13	10	13	9	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669793266	8	29057111	AAG	A	360	PASS	KIF13B	ENST00000357808	r.?	-	-	Del	intronic	D	29057111	29057115	2	7	311.306	-	-	1	1	-	KIF13B|ENST00000357808|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF13B|ENST00000357808|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	6	0	2	0	13	9	13	9	7	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669794684	8	34551200	TC	T	300	PASS	-	-	-	-	-	Del	-	D	34551200	34551202	1	12	268.954	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	2	9	4	106	127	106	127	9	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669796455	8	37780392	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	37780392	37780411	2	12	267.148	-	-	9	1	-	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	6	101	104	101	104	3	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669798198	8	39781495	G	GT	780	PASS	IDO1	CCDS47847.1	r.?	-	-	Ins	intronic	I	39781495	39781503	1	54	689.648	-	-	7	1	1	IDO1|CCDS47847.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IDO1|CCDS47847.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	25	17	25	0	0	./.	8	5	10	6	123	98	123	99	10	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669798387	8	39953228	TTC	T	269	PASS	-	-	-	-	-	Del	-	D	39953228	39953232	2	6	253.903	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	5	0	7	0	108	101	108	101	7	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669799109	8	41334470	G	GC	360	PASS	-	-	-	-	-	Ins	-	I	41334470	41334475	1	16	319.133	-	-	4	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	4	5	69	57	69	58	4	5	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669800758	8	47270295	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	47270295	47270305	1	10	265.342	-	-	9	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	1	4	1	4	52	46	52	46	1	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669802283	8	51267154	GT	G	780	PASS	-	-	-	-	-	Del	-	D	51267154	51267163	1	54	699.281	-	-	8	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	8	5	9	6	66	70	66	70	9	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669802547	8	51883124	ATTCTCTTC	A	493	PASS	-	-	-	-	-	Del	-	D	51883124	51883134	8	84	914.444	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	11	7	12	54	62	54	62	7	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669802771	8	52359454	CTA	C	360	PASS	PXDNL	CCDS47855.1	r.?	-	-	Del	intronic	D	52359454	52359471	2	16	322.745	-	-	8	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	3	4	3	51	64	51	64	4	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669804375	8	55202620	TTCCTTCTTGTTGC	T	406	PASS	-	-	-	-	-	Del	-	D	55202620	55202634	13	60	729.591	-	-	1	1	1	-	-	./.	0	0	0	0	23	10	23	10	0	0	./.	5	9	13	9	73	61	73	61	13	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669805439	8	57145043	CTA	C	420	PASS	-	-	-	-	-	Del	-	D	57145043	57145059	2	20	376.536	-	-	7	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	3	4	3	89	49	89	49	4	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669807550	8	61843659	A	AC	269	PASS	-	-	-	-	-	Ins	-	I	61843659	61843660	1	12	238.851	-	-	0	1	-	-	-	./.	0	0	0	0	12	6	13	6	0	0	./.	3	2	6	4	66	43	72	43	6	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669808102	8	62965506	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	62965506	62965524	2	12	265.944	-	-	8	1	-	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	3	2	2	2	41	81	41	81	4	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669809279	8	65638742	AT	A	420	PASS	CYP7B1	CCDS6180.1	r.?	-	-	Del	intronic	D	65638742	65638744	1	20	371.719	-	-	1	1	1	CYP7B1|CCDS6180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP7B1|CCDS6180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	4	3	4	3	59	71	59	71	4	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669811133	8	68814929	A	AT	689	PASS	-	-	-	-	-	Ins	-	I	68814929	68814937	1	48	638.265	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	7	7	12	55	65	55	65	7	12	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669813577	8	73534821	T	TA	480	PASS	KCNB2	CCDS6209.1	r.?	-	-	Ins	intronic	I	73534821	73534830	1	24	422.5	-	-	8	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	5	3	9	7	59	75	60	75	9	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669813585	8	73578904	TG	T	269	PASS	KCNB2	CCDS6209.1	r.?	-	-	Del	intronic	D	73578904	73578906	1	6	260.525	-	-	1	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	0	6	0	55	50	55	50	6	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669818514	8	83797326	AG	A	300	PASS	-	-	-	-	-	Del	-	D	83797326	83797328	1	6	257.515	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	5	0	19	0	53	62	53	62	19	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669819926	8	87113713	AAG	A	360	PASS	ATP6V0D2	CCDS6241.1	r.?	-	-	Del	intronic	D	87113713	87113717	2	7	317.928	-	-	1	1	-	ATP6V0D2|CCDS6241.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP6V0D2|CCDS6241.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	6	0	16	0	62	44	62	44	16	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669820006	8	87243772	GTC	G	360	PASS	SLC7A13	CCDS34917.1	r.?	-	-	Del	upstream	D	87243772	87243788	2	15	321.541	-	-	7	1	-	SLC7A13|CCDS34917.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SLC7A13|CCDS34917.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	12	15	12	0	0	./.	2	4	2	4	50	51	50	51	2	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669820704	8	88657683	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	88657683	88657691	1	20	372.321	-	-	7	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	3	4	6	7	64	59	64	61	6	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669823423	8	95241105	AT	A	360	PASS	-	-	-	-	-	Del	-	D	95241105	95241109	1	16	319.735	-	-	3	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	3	5	3	57	62	57	62	5	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669826581	8	100636236	T	TA	358	PASS	VPS13B	CCDS6280.1	r.?	-	-	Ins	intronic	I	100636236	100636237	1	18	336.8	-	-	0	1	-	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	5	2	14	10	49	48	49	48	14	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669830967	8	108946614	TTA	T	269	PASS	RSPO2	CCDS6307.1	r.?	-	-	Del	intronic	D	108946614	108946618	2	6	263.536	-	-	1	1	1	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	0	11	0	53	47	53	47	11	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669831624	8	110443760	AAC	A	420	PASS	PKHD1L1	CCDS47911.1	r.?	-	-	Del	intronic	D	110443760	110443777	2	20	376.536	-	-	8	1	1	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	3	4	5	4	57	64	57	64	5	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669833697	8	115197093	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	115197093	115197113	2	12	268.352	-	-	9	1	-	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	3	3	62	57	62	57	3	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669833972	8	115738918	CTT	C	1020	PASS	-	-	-	-	-	Del	-	D	115738918	115738921	2	90	912.638	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	8	9	8	10	58	71	58	71	8	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669834768	8	117477478	AT	A	269	PASS	-	-	-	-	-	Del	-	D	117477478	117477480	1	6	238.851	-	-	1	1	-	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	0	9	0	66	47	66	47	9	0	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669836233	8	120511943	C	CTG	672	PASS	-	-	-	-	-	Ins	-	I	120511943	120511948	2	49	630.438	-	-	2	1	1	-	-	./.	0	0	0	0	18	15	18	16	0	0	./.	6	6	11	10	46	62	48	62	11	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669838835	8	125248866	A	AT	600	PASS	ENSG00000214803	ENST00000399016	r.?	-	-	Ins	intronic	I	125248866	125248868	1	35	527.071	-	-	1	1	1	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	9	3	9	0	0	./.	6	4	7	7	53	59	54	59	7	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669840987	8	128993375	CTG	C	329	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128993375	128993391	2	15	322.745	-	-	7	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	2	4	2	4	56	64	56	64	2	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669853070	9	11733570	TA	T	300	PASS	-	-	-	-	-	Del	-	D	11733570	11733578	1	10	269.833	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	4	5	4	16	21	16	21	5	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669877939	9	106172200	AC	A	540	PASS	-	-	-	-	-	Del	-	D	106172200	106172202	1	18	470.528	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	8	1	16	4	31	18	31	18	16	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669879486	9	110600830	CTTGTGGCATTGGG	C	348	PASS	-	-	-	-	-	Del	-	D	110600830	110600844	13	49	646.035	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	6	5	7	13	18	14	18	6	7	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669882604	9	119373802	G	GA	660	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119373802	119373811	1	40	588.336	-	-	8	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|ENST00000358637|r.2787_2788insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	20	20	20	20	0	0	./.	4	7	5	8	27	23	27	24	5	8	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669896268	X	25142829	TC	T	1020	PASS	-	-	-	-	-	Del	-	D	25142829	25142832	1	88	919.129	-	-	2	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	7	10	10	11	21	25	21	25	10	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669897994	X	31621786	CA	C	600	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	31621786	31621790	1	35	541.018	-	-	3	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	6	4	12	10	26	28	26	28	12	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669898619	X	33784043	C	CA	1020	PASS	-	-	-	-	-	Ins	-	I	33784043	33784046	1	90	908.292	-	-	2	1	1	-	-	./.	0	0	0	0	20	10	21	10	0	0	./.	9	8	11	11	24	29	24	29	11	11	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669902743	X	50808970	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	50808970	50808979	1	42	588.497	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	5	6	8	9	25	26	25	26	8	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669904558	X	62713619	ACGCC	AT	465	PASS	-	-	-	-	-	Complex	-	DI	62713620	62713623	4	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	5	4	0	0	25	11	25	11	5	4	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669914834	X	103292695	G	GA	300	PASS	H2BFM	ENST00000243297	r.?	-	-	Ins	intronic	I	103292695	103292705	1	12	267.499	-	-	9	1	1	H2BFM|ENST00000243297|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	H2BFM|ENST00000243297|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	16	23	16	0	0	./.	3	2	4	2	35	24	35	24	4	2	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669918646	X	118902459	CTCCCG	C	327	PASS	-	-	-	-	-	Del	-	D	118902459	118902465	5	8	378.111	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	0	7	3	10	19	27	19	27	3	10	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669920489	X	125799317	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	125799317	125799327	1	12	266.295	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	2	3	38	11	38	11	2	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669920951	X	127911759	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	127911759	127911767	1	55	748.997	-	-	7	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	10	4	13	6	28	20	28	20	13	6	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669922388	X	134072605	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	134072605	134072612	1	32	534.998	-	-	6	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	3	10	3	17	18	17	18	10	3	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669923899	X	139976705	C	CT	1020	PASS	-	-	-	-	-	Ins	-	I	139976705	139976713	1	90	909.496	-	-	7	1	1	-	-	./.	0	0	0	0	25	13	26	14	0	0	./.	9	8	14	9	36	22	36	22	14	9	1	1	1	1	1	1	1	1
2579560	PD14449a	PD14449b	2669926252	X	148715839	TCTTGCTAGGGG	T	261	PASS	HSFX2	CCDS48179.1	r.?	-	-	Del	intronic	D	148715839	148715853	11	28	483.906	-	-	1	1	1	HSFX2|CCDS48179.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HSFX2|CCDS48179.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	3	6	3	20	17	20	17	6	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672568306	1	21506704	C	CATTATATGTAATATAT	261	PASS	EIF4G3	CCDS214.1	r.?	-	-	Ins	upstream	I	21506704	21506723	16	10	395.487	-	-	1	1	-	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	2	8	2	0	0	./.	9	0	5	0	29	2	30	2	9	0	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672575800	1	43390454	C	CG	300	PASS	SLC2A1	CCDS477.1	r.?	-	-	Ins	downstream	I	43390454	43390458	1	12	263.732	-	-	3	1	1	SLC2A1|CCDS477.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SLC2A1|CCDS477.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	6	8	6	8	0	0	./.	2	3	3	3	13	13	14	13	3	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672599943	1	119215388	TACTAG	TCCAA	656	PASS	-	-	-	-	-	Complex	-	DI	119215389	119215393	5	56	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	7	0	0	21	23	21	23	6	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672609830	1	162454770	TC	T	277	PASS	-	-	-	-	-	Del	-	D	162454770	162454774	1	10	268.549	-	-	3	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	4	1	5	2	33	33	33	33	5	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672611742	1	168019650	TC	T	269	PASS	DCAF6	CCDS1267.2	r.?	-	-	Del	intronic	D	168019650	168019652	1	12	268.549	-	-	1	1	1	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	5	3	30	16	30	16	5	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672637906	1	240700382	AT	A	689	PASS	GREM2	CCDS31070.1	r.?	-	-	Del	intronic	D	240700382	240700390	1	49	644.517	-	-	7	1	1	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	6	6	9	7	31	29	31	29	9	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672641184	1	247822848	G	GT	689	PASS	-	-	-	-	-	Ins	-	I	247822848	247822853	1	49	637.293	-	-	4	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	6	6	7	10	30	29	31	29	7	10	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672643709	10	4986875	AGCAAAAAGATTG	A	348	PASS	-	-	-	-	-	Del	-	D	4986875	4986891	12	45	646.574	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	8	4	9	5	24	18	24	18	9	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672649172	10	16653814	GC	G	420	PASS	RSU1	CCDS7112.1	r.?	-	-	Del	intronic	D	16653814	16653816	1	20	376.566	-	-	1	1	1	RSU1|CCDS7112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RSU1|CCDS7112.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	4	3	4	3	29	30	29	30	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672651496	10	22503065	A	AG	960	PASS	ENSG00000224369	ENST00000412505	r.?	-	-	Ins	intronic	I	22503065	22503066	1	72	851.863	-	-	0	1	1	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	5	11	9	13	30	26	30	26	9	13	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672664151	10	58713470	GGCAGGCGCCTGTAGTCCCA	G	290	PASS	-	-	-	-	-	Del	-	D	58713470	58713492	19	35	538.812	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	6	3	5	15	21	15	22	4	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672665795	10	62863910	TACTCCC	T	348	PASS	-	-	-	-	-	Del	-	D	62863910	62863918	6	33	646.574	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	10	4	14	15	26	15	26	4	14	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672668248	10	69525490	CT	C	329	PASS	-	-	-	-	-	Del	-	D	69525490	69525494	1	15	323.287	-	-	3	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	2	6	4	20	19	20	19	6	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672670567	10	74989812	TAC	T	600	PASS	FAM149B1	CCDS44435.1	r.?	-	-	Del	intronic	D	74989812	74989816	2	32	538.812	-	-	1	1	1	FAM149B1|CCDS44435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM149B1|CCDS44435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	7	3	8	8	22	30	22	30	8	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672673420	10	84325952	GT	G	420	PASS	NRG3	CCDS31233.1	r.?	-	-	Del	intronic	D	84325952	84325958	1	18	377.168	-	-	5	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	5	3	6	19	24	19	24	3	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672682268	10	111254119	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	111254119	111254137	2	12	263.385	-	-	8	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	2	3	2	3	20	27	20	27	2	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672682874	10	113318416	AT	A	420	PASS	-	-	-	-	-	Del	-	D	113318416	113318422	1	20	376.566	-	-	5	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	6	15	24	15	24	4	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672698909	11	23706703	CT	C	600	PASS	-	-	-	-	-	Del	-	D	23706703	23706711	1	32	540.245	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	7	5	8	15	32	15	32	5	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672701924	11	32836146	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	32836146	32836150	1	12	267.112	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	2	4	3	19	14	19	14	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672701925	11	32836351	TAAAAGGTAGTATATCCAG	T	261	PASS	-	-	-	-	-	Del	-	D	32836351	32836374	18	30	486.22	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	4	5	4	20	15	20	15	5	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672706859	11	47617997	A	AT	300	PASS	C1QTNF4	CCDS7942.1	r.?	-	-	Ins	upstream	I	47617997	47618004	1	10	260.489	-	-	6	1	1	C1QTNF4|CCDS7942.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C1QTNF4|CCDS7942.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	8	13	8	0	0	./.	1	4	3	6	25	26	25	26	3	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672707892	11	49677645	TC	T	300	PASS	ENSG00000205035	ENST00000357667	r.?	-	-	Del	intronic	D	49677645	49677648	1	12	266.51	-	-	2	1	1	ENSG00000205035|ENST00000357667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000205035|ENST00000357667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	3	6	5	33	16	33	16	6	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672709292	11	56490661	CA	C	360	PASS	-	-	-	-	-	Del	-	D	56490661	56490670	1	16	324.147	-	-	8	1	1	-	-	./.	0	0	0	0	25	9	25	9	0	0	./.	3	3	4	7	18	23	18	23	4	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672713279	11	67654227	GGGGAGCTGAACTGGCTGAGGGTCGAGGCGAAAACTCGGTCTGGCTTAGGAGGACCTTGGAGGTAGAATTATGAATGGCTCATGAACGGAGCCATGGAGAGTGGATCCTGACTAAACTTAGCTATTGATCAATGTAGAGAAACTGATCAGGGTGGCTAGGAGTTTCAGTAACAACCTGCCACACAGCTTGAACAGTTGTGAGGTTCAATGACCCTTCAGGGGGCCACTTGACTTTAAACTTTGGCCATTTTATTTTGCAGAGTGTCTGGAGCTTACCTTTTTTAAGGC	G	322	PASS	AP003716.3	ENST00000511677	r.?	-	-	Del	intronic	D	67654227	67654517	287	48	647.09	-	-	1	1	1	AP003716.3|ENST00000511677|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP003716.3|ENST00000511677|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	5	7	0	0	17	10	22	17	5	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672720376	11	88467553	GT	G	397	PASS	GRM5	CCDS44694.1	r.?	-	-	Del	intronic	D	88467553	88467555	1	18	375.763	-	-	1	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	2	5	2	7	13	19	13	19	2	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672720797	11	89851301	AT	A	480	PASS	-	-	-	-	-	Del	-	D	89851301	89851307	1	24	430.992	-	-	5	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	5	5	7	17	29	17	29	5	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672728032	11	112894646	GA	G	300	PASS	-	-	-	-	-	Del	-	D	112894646	112894656	1	12	269.52	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	3	4	14	17	14	17	3	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672728877	11	115785288	TC	T	420	PASS	-	-	-	-	-	Del	-	D	115785288	115785290	1	20	378.171	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	4	3	5	3	20	14	20	14	5	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672732942	11	129024081	TCTTA	T	329	PASS	ARHGAP32	CCDS44769.1	r.?	-	-	Del	intronic	D	129024081	129024089	4	15	324.147	-	-	1	1	1	ARHGAP32|CCDS44769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP32|CCDS44769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	2	5	4	21	30	21	30	5	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672751023	12	54659535	CAGGCCAAGAGGCTGGGCACAACGG	CATGATCCTTTAAAA	377	PASS	CBX5	CCDS8875.1	r.?	-	-	Complex	intronic	DI	54659536	54659559	24	50	0	-	-	0	1	1	CBX5|CCDS8875.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	CBX5|CCDS8875.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	9	4	0	0	14	14	19	18	9	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672755298	12	66589449	G	GT	960	PASS	IRAK3	CCDS8975.1	r.?	-	-	Ins	intronic	I	66589449	66589457	1	77	854.168	-	-	7	1	1	IRAK3|CCDS8975.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IRAK3|CCDS8975.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	6	10	13	16	34	31	35	31	13	16	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672758481	12	76225057	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	76225057	76225066	1	21	427.084	-	-	8	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	6	2	6	2	31	19	31	19	6	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672759967	12	80912189	AATATTTTCTCCT	A	464	PASS	PTPRQ	ENST00000418574	r.?	-	-	Del	intronic	D	80912189	80912204	12	72	863.801	-	-	1	1	1	PTPRQ|ENST00000418574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRQ|ENST00000418574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	11	5	11	5	41	21	41	21	11	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672762588	12	89485322	CCAGCTGCTT	C	261	PASS	-	-	-	-	-	Del	-	D	89485322	89485337	9	30	485.888	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	5	4	6	4	23	21	23	21	6	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672767825	12	103336778	GA	G	509	PASS	-	-	-	-	-	Del	-	D	103336778	103336780	1	30	485.286	-	-	1	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	5	4	5	9	40	34	40	34	5	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672769159	12	106690131	AAATTAGATAATTATGCC	A	551	PASS	-	-	-	-	-	Del	-	D	106690131	106690152	17	108	1025.76	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	11	8	11	9	26	16	27	16	12	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672769421	12	107561932	CA	C	660	PASS	-	-	-	-	-	Del	-	D	107561932	107561938	1	40	590.251	-	-	5	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	7	5	7	31	29	31	29	5	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672773479	12	117781427	CT	C	780	PASS	NOS1	CCDS41842.1	r.?	-	-	Del	intronic	D	117781427	117781431	1	54	700.634	-	-	3	1	1	NOS1|CCDS41842.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NOS1|CCDS41842.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	8	5	12	5	32	25	32	25	12	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672773537	12	117991665	TCC	T	269	PASS	KSR2	ENST00000425217	r.?	-	-	Del	intronic	D	117991665	117991669	2	10	268.132	-	-	3	1	1	KSR2|ENST00000425217|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KSR2|ENST00000425217|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	1	4	1	6	31	30	31	30	1	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672778283	12	127201689	GGA	G	389	PASS	-	-	-	-	-	Del	-	D	127201689	127201709	2	20	370.086	-	-	9	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	3	4	4	4	46	24	46	24	4	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672778310	12	127270064	CA	C	927	PASS	-	-	-	-	-	Del	-	D	127270064	127270069	1	70	908.757	-	-	4	1	1	-	-	./.	0	0	0	0	2	19	2	19	0	0	./.	4	13	7	24	13	33	13	33	7	24	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672780846	12	133207534	T	TAA	329	PASS	POLE	CCDS9278.1	r.?	-	-	Ins	intronic	I	133207534	133207541	2	12	316.701	-	-	6	1	1	POLE|CCDS9278.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POLE|CCDS9278.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	1	5	2	39	23	39	23	5	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672787379	13	32953548	AGG	A	840	PASS	BRCA2	CCDS9344.1	r.9083_9084delGG	c.8850_8851delGG	p.K2950fs*6	Del	frameshift	D	32953548	32953551	2	63	757.189	-	-	2	1	1	BRCA2|CCDS9344.1|r.9083_9084delGG|c.8850_8851delGG|p.K2950fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	BRCA2|CCDS9344.1|r.9083_9084delGG|c.8850_8851delGG|p.K2950fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	19	8	19	8	0	0	./.	8	6	10	9	20	27	20	27	10	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672788019	13	35226335	CTGCAAGTGCACA	CAAGAATT	290	PASS	-	-	-	-	-	Complex	-	DI	35226336	35226347	12	36	0	-	-	0	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	5	5	0	0	24	25	24	25	5	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672796144	13	59580128	GACATTCACAAAAGATATGTCAAGGCTC	G	307	PASS	-	-	-	-	-	Del	-	D	59580128	59580159	27	42	595.407	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	6	3	4	18	16	20	18	5	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672803561	13	80246495	GA	G	420	PASS	-	-	-	-	-	Del	-	D	80246495	80246499	1	18	378.895	-	-	3	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	2	5	2	5	24	35	24	35	2	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672804011	13	81417483	GA	G	540	PASS	-	-	-	-	-	Del	-	D	81417483	81417493	1	28	487.151	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	3	11	5	46	15	46	15	11	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672804025	13	81459575	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	81459575	81459585	1	70	799.878	-	-	9	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	6	9	7	13	25	37	25	37	7	13	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672805421	13	85728617	AG	A	360	PASS	-	-	-	-	-	Del	-	D	85728617	85728619	1	15	324.768	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	4	2	23	12	23	12	4	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672806968	13	90287958	CCATCGCATGTCAA	C	290	PASS	-	-	-	-	-	Del	-	D	90287958	90287975	13	27	541.279	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	8	2	8	2	26	13	27	13	9	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672809571	13	97251399	TC	T	360	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Del	intronic	D	97251399	97251401	1	16	324.768	-	-	1	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	3	3	5	4	23	34	23	34	5	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672809673	13	97790702	CA	C	480	PASS	-	-	-	-	-	Del	-	D	97790702	97790705	1	25	433.023	-	-	2	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	4	6	6	17	15	17	15	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672810229	13	99192407	AG	A	300	PASS	STK24	CCDS32001.1	r.?	-	-	Del	intronic	D	99192407	99192409	1	10	270.64	-	-	1	1	1	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK24|CCDS32001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	1	4	3	27	22	27	22	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672812253	13	104612276	CA	C	300	PASS	-	-	-	-	-	Del	-	D	104612276	104612278	1	10	270.64	-	-	1	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	1	4	4	4	20	27	20	27	4	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672813032	13	106714097	GT	G	540	PASS	-	-	-	-	-	Del	-	D	106714097	106714099	1	28	482.335	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	6	3	7	6	18	32	18	32	7	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672814196	13	109741707	GCCCGCCA	G	261	PASS	MYO16	CCDS32008.1	r.?	-	-	Del	intronic	D	109741707	109741717	7	24	484.141	-	-	1	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	2	7	2	8	18	20	19	20	3	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672814577	13	110836182	AGCACAGCCCCGGCCCTCTGG	A	261	PASS	COL4A1	CCDS9511.1	r.?	-	-	Del	intronic	D	110836182	110836207	20	30	487.151	-	-	1	1	1	COL4A1|CCDS9511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A1|CCDS9511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	5	5	5	28	22	28	22	5	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672814794	13	111442318	GCTTTTCTCCTCCTCAACATTA	G	261	PASS	-	-	-	-	-	Del	-	D	111442318	111442341	21	30	487.151	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	5	4	4	20	15	20	16	4	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672815262	13	113029900	CAGAGTG	CCCA	269	PASS	C13orf28	CCDS9524.1	r.?	-	-	Complex	upstream	DI	113029901	113029906	6	10	0	-	-	0	1	1	C13orf28|CCDS9524.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	C13orf28|CCDS9524.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	./.	0	0	0	0	5	8	5	8	0	0	./.	1	4	0	0	14	22	14	22	1	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672819096	14	27769138	GT	G	300	PASS	-	-	-	-	-	Del	-	D	27769138	27769143	1	10	270.891	-	-	4	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	1	4	2	5	19	30	19	30	2	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672819662	14	29282458	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	29282458	29282468	1	12	267.279	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	2	3	22	32	22	32	2	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672820423	14	31638264	A	AT	300	PASS	HECTD1	CCDS41939.1	r.?	-	-	Ins	intronic	I	31638264	31638273	1	10	267.881	-	-	8	1	1	HECTD1|CCDS41939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HECTD1|CCDS41939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	4	4	23	37	24	37	4	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672822954	14	37961863	G	GT	300	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Ins	intronic	I	37961863	37961873	1	10	266.677	-	-	9	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	1	4	17	20	18	20	1	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672825449	14	46488763	GT	G	480	PASS	-	-	-	-	-	Del	-	D	46488763	46488765	1	24	432.824	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	5	5	5	24	28	24	28	5	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672826023	14	48101965	AG	A	480	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	48101965	48101974	1	24	430.416	-	-	8	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	3	10	5	34	29	34	29	10	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672826031	14	48124967	AC	A	480	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	48124967	48124969	1	25	433.426	-	-	1	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	4	5	9	29	28	29	28	5	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672833626	14	70446308	C	CGT	300	PASS	SMOC1	CCDS32110.1	r.?	-	-	Ins	intronic	I	70446308	70446325	2	12	258.85	-	-	8	1	1	SMOC1|CCDS32110.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMOC1|CCDS32110.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	2	3	2	4	23	28	24	28	2	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672837260	14	78947303	TC	T	480	PASS	-	-	-	-	-	Del	-	D	78947303	78947306	1	24	433.426	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	5	3	23	17	23	17	5	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672844021	14	99110372	TTA	T	300	PASS	-	-	-	-	-	Del	-	D	99110372	99110379	2	12	270.891	-	-	3	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	3	2	3	2	22	17	22	17	3	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672846728	14	106664759	AAT	A	629	PASS	-	-	-	-	-	Del	-	D	106664759	106664765	2	42	594.756	-	-	2	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	6	5	8	7	32	23	32	23	9	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672884644	16	19726298	TTTC	T	420	PASS	C16orf88	CCDS42127.1	r.136_138delGAA	c.57_59delGAA	p.K20delK	Del	inframe	D	19726298	19726310	3	18	378.006	-	-	3	1	1	C16orf88|CCDS42127.1|r.136_138delGAA|c.57_59delGAA|p.K20delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	C16orf88|CCDS42127.1|r.136_138delGAA|c.57_59delGAA|p.K20delK|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	12	13	12	13	0	0	./.	5	2	6	3	26	14	26	14	6	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672886953	16	25655008	CATGGAGGTA	C	377	PASS	-	-	-	-	-	Del	-	D	25655008	25655021	9	56	700.636	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	7	6	9	6	28	30	28	30	9	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672888759	16	30716618	C	CA	449	PASS	SRCAP	CCDS10689.2	r.?	-	-	Ins	intronic	I	30716618	30716628	1	16	426.159	-	-	9	1	1	SRCAP|CCDS10689.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRCAP|CCDS10689.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	1	7	1	7	11	30	11	30	1	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672891422	16	34373012	T	TC	420	PASS	-	-	-	-	-	Ins	-	I	34373012	34373014	1	20	374.996	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	4	3	6	7	19	26	19	28	6	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672891441	16	34484842	CCAGTAAG	C	261	PASS	ENSG00000237113	ENST00000425453	r.?	-	-	Del	downstream	D	34484842	34484850	7	28	487.556	-	-	1	1	1	ENSG00000237113|ENST00000425453|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000237113|ENST00000425453|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	7	6	7	0	0	./.	3	6	3	6	14	26	14	26	3	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672893910	16	52532500	T	TG	300	PASS	TOX3	ENST00000219746	r.?	-	-	Ins	intronic	I	52532500	52532510	1	12	267.854	-	-	9	1	1	TOX3|ENST00000219746|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TOX3|ENST00000219746|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	2	4	4	25	26	26	26	4	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672916225	17	29464811	GAA	G	420	PASS	NF1	CCDS42292.1	r.?	-	-	Del	intronic	D	29464811	29464821	2	20	377.209	-	-	9	1	1	NF1|CCDS42292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AC134669.1|CCDS47195.1|r.2056_2057delAA|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	14	18	14	18	0	0	./.	3	4	4	6	26	29	26	29	4	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672922483	17	45593992	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	45593992	45594001	1	16	316.441	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	6	6	39	24	40	24	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672925753	17	52864632	AC	A	480	PASS	-	-	-	-	-	Del	-	D	52864632	52864634	1	24	432.558	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	3	5	6	30	26	30	26	5	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672926187	17	54335545	TCTTCATTCCACAATTTAAATGGGCTTCTGATGGCTTTACCTGTTAGGTGAACTTTTAGGAA	T	290	PASS	ANKFN1	CCDS32686.1	r.?	-	-	Del	intronic	D	54335545	54335610	61	36	541.45	-	-	1	1	1	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	5	0	0	17	16	22	21	5	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672928084	17	58180026	CGGCCGCGGGCCGCGGG	C	292	PASS	-	-	-	-	-	Del	-	D	58180026	58180043	16	36	587.768	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	8	3	8	3	28	12	29	12	9	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672934007	17	70915397	GATA	G	300	PASS	SLC39A11	CCDS11690.1	r.?	-	-	Del	intronic	D	70915397	70915417	3	12	270.725	-	-	6	1	1	SLC39A11|CCDS11690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC39A11|CCDS11690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	2	24	42	24	42	3	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672947870	18	30381070	GGTGTCCAGTAA	G	406	PASS	-	-	-	-	-	Del	-	D	30381070	30381085	11	55	759.767	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	10	4	11	16	30	16	30	4	11	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672949960	18	38519120	GCTATC	G	329	PASS	-	-	-	-	-	Del	-	D	38519120	38519128	5	12	325.614	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	1	5	1	6	19	20	19	20	1	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672958814	18	66031251	ACATAG	A	420	PASS	-	-	-	-	-	Del	-	D	66031251	66031260	5	18	379.883	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	2	5	3	16	15	16	15	5	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672961201	18	73217031	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	73217031	73217050	2	15	325.614	-	-	9	1	-	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	2	4	17	19	17	19	2	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672973140	19	24522423	TCACAGAGTTAAA	TGATGTGTG	348	PASS	-	-	-	-	-	Complex	-	DI	24522424	24522435	12	49	0	-	-	0	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	6	0	0	35	44	35	44	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672973663	19	28769034	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	28769034	28769036	1	16	321.898	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	3	5	4	25	15	25	15	5	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672987005	2	4330408	G	GA	697	PASS	-	-	-	-	-	Ins	-	I	4330408	4330416	1	48	638.399	-	-	7	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	7	5	8	21	24	21	24	5	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2672989846	2	14035083	GC	G	300	PASS	-	-	-	-	-	Del	-	D	14035083	14035086	1	12	269.01	-	-	2	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	3	4	6	14	10	14	10	4	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673018166	2	108747026	AG	A	300	PASS	-	-	-	-	-	Del	-	D	108747026	108747029	1	10	269.01	-	-	2	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	1	4	2	6	17	16	17	16	2	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673018463	2	109554163	ATGTGTGTGTATG	A	290	PASS	EDAR	CCDS2081.1	r.?	-	-	Del	intronic	D	109554163	109554187	12	32	538.02	-	-	1	1	-	EDAR|CCDS2081.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EDAR|CCDS2081.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	7	3	9	24	36	25	37	4	10	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673031421	2	152011831	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	152011831	152011839	1	16	318.597	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	4	3	22	22	22	22	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673038497	2	175424623	TA	T	300	PASS	WIPF1	CCDS2260.1	r.4263delU	c.?	p.?	Del	3'UTR variant	D	175424623	175424632	1	12	269.01	-	-	8	1	1	WIPF1|CCDS2260.1|r.4263delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	WIPF1|CCDS2260.1|r.4263delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	19	11	19	11	0	0	./.	3	2	4	3	19	23	19	23	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673040643	2	183381535	G	GA	329	PASS	PDE1A	CCDS2285.1	r.?	-	-	Ins	intronic	I	183381535	183381538	1	7	319.199	-	-	2	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	8	0	0	./.	6	0	8	0	18	10	18	11	9	0	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673042627	2	190204400	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	190204400	190204407	2	15	322.21	-	-	3	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	5	2	21	22	21	22	5	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673055847	2	231098111	C	CA	449	PASS	SP140	CCDS42831.1	r.?	-	-	Ins	intronic	I	231098111	231098120	1	25	423.793	-	-	8	1	1	SP140|CCDS42831.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SP140|CCDS42831.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	4	9	6	21	18	21	18	9	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673057666	2	236770489	GCATTTCCTTAAATGA	G	348	PASS	AGAP1	CCDS33408.1	r.?	-	-	Del	intronic	D	236770489	236770505	15	48	645.624	-	-	1	1	1	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	5	7	6	7	22	25	22	25	6	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673058034	2	238163639	G	GT	300	PASS	ENSG00000224132	ENST00000445534	r.?	-	-	Ins	upstream	I	238163639	238163649	1	12	264.795	-	-	9	1	1	ENSG00000224132|ENST00000445534|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000224132|ENST00000445534|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	16	10	16	11	0	0	./.	3	2	3	2	24	25	25	25	3	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673065256	20	17196308	TAATATGAC	T	319	PASS	-	-	-	-	-	Del	-	D	17196308	17196317	8	42	596.379	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	6	6	5	19	23	19	24	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673068343	20	26231429	CA	C	360	PASS	-	-	-	-	-	Del	-	D	26231429	26231434	1	12	321.138	-	-	4	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	1	5	3	5	14	24	14	24	3	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673070511	20	32579215	TC	T	300	PASS	RALY	CCDS13229.1	r.?	-	-	Del	upstream	D	32579215	32579223	1	12	271.629	-	-	7	1	1	RALY|CCDS13229.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RALY|CCDS13229.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	4	16	17	16	17	2	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673076661	20	49371290	C	CA	360	PASS	PARD6B	CCDS33485.1	r.?	-	-	Ins	downstream	I	49371290	49371297	1	16	322.342	-	-	6	1	1	PARD6B|CCDS33485.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PARD6B|ENST00000396039|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	10	22	10	0	0	./.	3	3	3	4	27	33	27	33	3	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673080316	20	59304858	GTGAAC	G	445	PASS	ENSG00000237240	ENST00000456299	r.?	-	-	Del	intronic	D	59304858	59304866	5	35	543.257	-	-	1	1	1	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	6	5	7	32	24	32	24	5	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673087419	21	20323750	CT	C	360	PASS	-	-	-	-	-	Del	-	D	20323750	20323754	1	15	326.254	-	-	3	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	2	5	25	24	25	24	2	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673089147	21	24447844	ACATA	ATAT	300	PASS	-	-	-	-	-	Complex	-	DI	24447845	24447848	4	10	0	-	-	0	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	1	0	0	20	23	20	23	4	1	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673103643	22	30950634	CAACATCAAATTCCTT	C	261	PASS	GAL3ST1	CCDS13879.1	r.1881_1895delAAGGAAUUUGAUGUU	c.?	p.?	Del	3'UTR variant	D	30950634	30950650	15	30	491.65	-	-	1	1	1	GAL3ST1|CCDS13879.1|r.1881_1895delAAGGAAUUUGAUGUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GAL3ST1|CCDS13879.1|r.1881_1895delAAGGAAUUUGAUGUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	5	8	5	0	0	./.	5	4	7	5	12	17	12	17	7	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673114049	3	11138913	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	11138913	11138922	1	21	426.203	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	2	6	7	33	24	34	24	6	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673114543	3	12420515	G	GT	540	PASS	PPARG	CCDS2610.2	r.?	-	-	Ins	intronic	I	12420515	12420524	1	30	479.478	-	-	8	1	1	PPARG|CCDS2610.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PPARG|CCDS2610.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	7	4	37	21	37	21	7	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673114752	3	13114687	CG	C	780	PASS	IQSEC1	ENST00000435445	r.?	-	-	Del	upstream	D	13114687	13114694	1	54	699.804	-	-	6	1	1	IQSEC1|ENST00000435445|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	IQSEC1|ENST00000435445|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	7	7	7	0	0	./.	5	8	6	9	18	18	18	18	6	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673116401	3	19219185	CA	C	300	PASS	KCNH8	CCDS2632.1	r.?	-	-	Del	intronic	D	19219185	19219190	1	10	269.387	-	-	4	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	1	4	2	4	14	14	14	14	2	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673117054	3	21636179	CTAAATTT	C	261	PASS	ZNF385D	CCDS2636.1	r.?	-	-	Del	intronic	D	21636179	21636193	7	30	484.897	-	-	1	1	1	ZNF385D|CCDS2636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF385D|CCDS2636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	5	4	5	12	22	12	22	4	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673133394	3	74670754	AGTAATCATTG	A	261	PASS	-	-	-	-	-	Del	-	D	74670754	74670768	10	30	484.897	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	5	7	5	24	11	24	11	7	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673134774	3	75875843	CT	C	540	PASS	-	-	-	-	-	Del	-	D	75875843	75875848	1	28	478.876	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	3	6	6	36	34	36	34	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673140427	3	97460028	CAA	C	300	PASS	EPHA6	CCDS46876.1	r.?	-	-	Del	intronic	D	97460028	97460035	2	12	269.387	-	-	6	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	4	4	17	22	17	22	4	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673140994	3	99461440	GA	G	420	PASS	COL8A1	CCDS2934.1	r.?	-	-	Del	intronic	D	99461440	99461445	1	18	375.938	-	-	4	1	1	COL8A1|CCDS2934.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	COL8A1|CCDS2934.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	5	2	5	4	28	19	28	19	5	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673144475	3	110088674	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	110088674	110088679	1	24	638.1	-	-	4	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	11	3	13	22	37	23	37	3	13	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673156591	3	146959115	A	AACAAATTCTACAAATTCT	261	PASS	-	-	-	-	-	Ins	-	I	146959115	146959124	18	28	387.363	-	-	0	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	6	3	1	2	14	19	19	21	6	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673160411	3	159653903	TTGGTCAGGC	T	261	PASS	-	-	-	-	-	Del	-	D	159653903	159653918	9	24	484.897	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	7	2	7	3	24	21	24	21	7	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673161050	3	161423149	CTA	C	480	PASS	-	-	-	-	-	Del	-	D	161423149	161423153	2	24	431.019	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	3	6	6	23	22	23	22	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673168440	3	184799309	TG	T	840	PASS	C3orf70	CCDS33900.1	r.2429delC	c.?	p.?	Del	3'UTR variant	D	184799309	184799312	1	60	754.284	-	-	2	1	1	C3orf70|CCDS33900.1|r.2429delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C3orf70|CCDS33900.1|r.2429delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	16	8	16	8	0	0	./.	5	9	5	14	12	30	12	30	5	14	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673169600	3	188115540	TAC	T	360	PASS	LPP	CCDS3291.1	r.?	-	-	Del	intronic	D	188115540	188115544	2	15	323.265	-	-	1	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	2	7	4	23	14	23	14	7	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673178334	4	16174818	A	AT	269	PASS	TAPT1	CCDS47030.1	r.?	-	-	Ins	intronic	I	16174818	16174828	1	12	266.137	-	-	9	1	1	TAPT1|CCDS47030.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TAPT1|CCDS47030.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	12	0	0	./.	2	3	3	3	20	33	21	33	3	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673179680	4	20683290	GAAAT	G	329	PASS	-	-	-	-	-	Del	-	D	20683290	20683299	4	12	322.977	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	1	5	1	22	15	22	15	5	1	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673197087	4	72892979	TGA	T	840	PASS	NPFFR2	CCDS3551.1	r.?	-	-	Del	upstream	D	72892979	72892985	2	63	753.612	-	-	2	1	1	NPFFR2|CCDS3551.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NPFFR2|CCDS3551.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	8	11	8	0	0	./.	8	6	12	10	21	23	21	23	12	10	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673197420	4	73836899	TAAG	T	329	PASS	-	-	-	-	-	Del	-	D	73836899	73836904	3	15	322.977	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	2	4	2	24	23	24	23	4	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673214751	4	127197029	GTTTATAGAGAACTAATGC	G	493	PASS	-	-	-	-	-	Del	-	D	127197029	127197053	18	84	914.499	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	11	6	0	0	24	22	24	22	11	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673219742	4	141344902	T	TTA	300	PASS	CLGN	CCDS3751.1	r.?	-	-	Ins	intronic	I	141344902	141344903	2	12	263.127	-	-	0	1	1	CLGN|CCDS3751.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CLGN|CCDS3751.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	10	0	0	./.	2	3	2	3	23	28	23	29	2	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673223455	4	152721953	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	152721953	152721957	2	12	266.739	-	-	3	1	-	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	2	3	3	4	30	29	30	29	3	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673224163	4	154741478	GAAAACACC	G	551	PASS	-	-	-	-	-	Del	-	D	154741478	154741491	8	108	1022.76	-	-	1	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	8	11	13	18	27	31	27	31	13	18	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673228122	4	165403794	TGTACCATATC	TTTTTATTA	464	PASS	-	-	-	-	-	Complex	-	DI	165403795	165403804	10	80	0	-	-	0	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	7	9	0	0	23	25	23	25	7	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673228715	4	166868953	GCATCTGGT	G	336	PASS	TLL1	CCDS3811.1	r.?	-	-	Del	intronic	D	166868953	166868963	8	33	645.954	-	-	1	1	1	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	10	4	11	8	26	8	26	4	11	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673229098	4	167864372	ACAAATTC	A	290	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	167864372	167864383	7	32	537.09	-	-	1	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	7	3	0	0	38	25	38	25	7	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673233457	4	179676015	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	179676015	179676025	1	12	263.729	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	6	2	29	30	29	31	6	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673240323	5	2112329	TA	T	1020	PASS	-	-	-	-	-	Del	-	D	2112329	2112334	1	88	916.18	-	-	4	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	10	7	12	8	33	32	33	32	12	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673241225	5	4411941	GCTTGAGC	G	261	PASS	ENSG00000237600	ENST00000432969	r.?	-	-	Del	intronic	D	4411941	4411951	7	24	485.355	-	-	1	1	1	ENSG00000237600|ENST00000432969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237600|ENST00000432969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	7	4	7	19	31	19	31	4	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673242364	5	7567379	TAGCTCCCA	T	348	PASS	ADCY2	CCDS3872.2	r.?	-	-	Del	intronic	D	7567379	7567390	8	48	647.141	-	-	1	1	1	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	7	5	8	7	29	20	29	20	8	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673249315	5	26915211	AGGTTATT	A	406	PASS	CDH9	CCDS3893.1	r.?	-	-	Del	intronic	D	26915211	26915219	7	60	754.395	-	-	1	1	1	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	9	5	10	7	34	21	34	21	10	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673256978	5	52474758	CCAT	C	360	PASS	-	-	-	-	-	Del	-	D	52474758	52474763	3	12	323.57	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	1	6	3	26	17	26	17	6	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673260966	5	65552244	C	CA	520	PASS	AC092373.1	ENST00000510964	r.?	-	-	Ins	intronic	I	65552244	65552254	1	30	479.937	-	-	9	1	1	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	4	5	5	5	21	20	21	20	5	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673264804	5	78804001	TAGTAATCTTCACACAGAAGAGA	T	261	PASS	HOMER1	CCDS43335.1	r.?	-	-	Del	intronic	D	78804001	78804027	22	18	485.355	-	-	1	1	1	HOMER1|CCDS43335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HOMER1|CCDS43335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	8	1	7	1	21	19	22	19	8	1	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673266826	5	85100770	TA	T	480	PASS	-	-	-	-	-	Del	-	D	85100770	85100772	1	25	431.427	-	-	1	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	4	4	4	4	13	14	13	14	4	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673271721	5	103444589	TC	T	300	PASS	-	-	-	-	-	Del	-	D	103444589	103444591	1	6	269.642	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	0	5	1	7	12	18	12	18	1	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673292566	5	173960552	TC	T	360	PASS	-	-	-	-	-	Del	-	D	173960552	173960554	1	16	323.57	-	-	1	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	3	3	3	19	24	19	24	3	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673293652	5	176775783	GC	G	538	PASS	LMAN2	CCDS4417.1	r.?	-	-	Del	intronic	D	176775783	176775785	1	35	537.478	-	-	1	1	1	LMAN2|CCDS4417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMAN2|CCDS4417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	6	4	7	5	27	30	27	30	7	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673299114	6	9755261	A	AT	629	PASS	OFCC1	ENST00000460363	r.?	-	-	Ins	intronic	I	9755261	9755271	1	42	586.808	-	-	9	1	1	OFCC1|ENST00000460363|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OFCC1|ENST00000460363|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	9	0	0	./.	6	5	7	7	26	22	26	22	7	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673305222	6	25180452	GGAGATT	G	290	PASS	CMAH	ENST00000377993	r.?	-	-	Del	intronic	D	25180452	25180462	6	36	538.279	-	-	1	1	1	CMAH|ENST00000377993|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CMAH|ENST00000377993|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	5	7	5	19	23	19	23	7	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673312510	6	42685370	ACCCT	A	389	PASS	PRPH2	CCDS4871.1	r.?	-	-	Del	intronic	D	42685370	42685377	4	18	377.638	-	-	1	1	1	PRPH2|CCDS4871.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRPH2|CCDS4871.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	2	6	2	30	26	30	26	6	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673316229	6	53839530	GCACTTCCAAGTGCTGCGGAATTAACCTTGTAAAAATATTACTCTTACTCTGTAATTAACCTGTCCAGGAACCCCTGGGGGCTTCCTATTGCCCAAAGGGTAAAATCCACAGTCTTTGTCCCGGTGACCAGCTCTTCTGCAATGGACTGGC	G	377	PASS	C6orf142	ENST00000505762	r.?	-	-	Del	intronic	D	53839530	53839683	150	54	701.328	-	-	1	1	1	C6orf142|ENST00000505762|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf142|ENST00000505762|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	8	0	0	8	20	13	28	5	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673322189	6	72081778	GT	G	269	PASS	ENSG00000203917	ENST00000370429	r.?	-	-	Del	downstream	D	72081778	72081785	1	10	269.741	-	-	6	1	1	ENSG00000203917|ENST00000370429|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000203917|ENST00000370429|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	14	12	14	0	0	./.	4	1	6	2	25	20	25	20	6	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673324828	6	80660390	GT	G	600	PASS	ELOVL4	CCDS4992.1	r.?	-	-	Del	upstream	D	80660390	80660397	1	35	539.483	-	-	6	1	1	ELOVL4|CCDS4992.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ELOVL4|CCDS4992.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	4	6	7	6	20	21	20	21	7	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673342279	6	148505391	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	148505391	148505395	2	10	262.517	-	-	1	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	4	1	10	2	39	20	39	20	10	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673354405	7	15719860	ACATCTGAGATGAGCACAAATGGATCAATAGATACATTATTG	ATACATTATGATAC	348	PASS	MEOX2	CCDS34605.1	r.?	-	-	Complex	intronic	DI	15719861	15719901	41	49	0	-	-	0	1	1	MEOX2|CCDS34605.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	MEOX2|CCDS34605.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	6	6	0	0	24	17	26	20	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673362245	7	40760931	A	AT	360	PASS	C7orf10	ENST00000309930	r.?	-	-	Ins	intronic	I	40760931	40760940	1	7	320.165	-	-	8	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	6	0	6	1	18	27	18	27	6	1	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673384315	7	107469992	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	107469992	107470000	1	12	266.202	-	-	7	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	3	2	4	3	18	21	19	21	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673386657	7	116683984	CT	C	300	PASS	ST7OT3	CCDS5770.1	r.?	-	-	Del	intronic	D	116683984	116683987	1	10	269.815	-	-	2	1	1	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST7OT3|CCDS5770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	6	1	19	16	19	16	6	1	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673391175	7	132441438	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	132441438	132441440	1	12	266.202	-	-	1	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	2	3	2	4	13	23	13	23	2	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673399275	7	156919462	TTCCACATATTTGTGAGTTTCCCAAATTGTC	T	319	PASS	-	-	-	-	-	Del	-	D	156919462	156919499	30	36	593.592	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	8	3	8	3	23	10	23	10	8	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673399560	7	157751532	CAGATTCAACATAATCTCTACCAAAAATATTGATATTTTTTCAGAGAT	C	348	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	157751532	157751583	47	49	646.351	-	-	1	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	6	2	1	13	15	17	20	6	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673403902	8	10842459	G	GT	360	PASS	XKR6	CCDS5978.2	r.?	-	-	Ins	intronic	I	10842459	10842468	1	12	320.264	-	-	8	1	1	XKR6|CCDS5978.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XKR6|CCDS5978.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	5	1	10	2	30	16	30	16	10	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673413306	8	35436585	GGGGAGAGGATATAGAT	G	435	PASS	UNC5D	CCDS6093.2	r.?	-	-	Del	intronic	D	35436585	35436602	16	66	809.691	-	-	1	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	10	6	10	21	20	21	20	6	10	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673414616	8	39922541	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	39922541	39922543	1	10	266.887	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	1	4	1	4	22	26	22	28	1	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673418725	8	56431465	GA	G	420	PASS	XKR4	CCDS34893.1	r.?	-	-	Del	intronic	D	56431465	56431473	1	18	377.856	-	-	7	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	5	4	6	18	17	18	17	4	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673428687	8	90261247	GT	G	509	PASS	-	-	-	-	-	Del	-	D	90261247	90261254	1	28	485.814	-	-	6	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	6	6	8	21	22	21	22	6	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673429580	8	93633282	TA	T	600	PASS	-	-	-	-	-	Del	-	D	93633282	93633284	1	35	539.794	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	6	4	6	16	24	16	24	4	6	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673429586	8	93653454	AC	A	660	PASS	-	-	-	-	-	Del	-	D	93653454	93653456	1	42	592.569	-	-	1	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	6	5	9	8	25	18	25	18	9	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673441854	8	130198563	CT	C	960	PASS	-	-	-	-	-	Del	-	D	130198563	130198565	1	80	859.456	-	-	1	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	9	7	11	11	27	19	27	19	11	11	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673442538	8	132167730	TA	T	780	PASS	-	-	-	-	-	Del	-	D	132167730	132167732	1	54	701.732	-	-	1	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	8	5	9	10	39	34	39	34	9	10	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673442907	8	133462524	T	TATTTTACAACCTCTAGCTAGCCACAGAGTGCTGATTGTGCATTTTTCCAGGGCACTGATTGGCAC	300	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Ins	intronic	I	133462524	133462534	65	10	74.2274	-	-	0	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	1	4	0	0	29	30	29	31	1	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673443727	8	136177122	CA	C	480	PASS	-	-	-	-	-	Del	-	D	136177122	136177126	1	24	430.029	-	-	3	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	3	6	3	30	17	30	17	6	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673444808	8	139143642	ACTC	A	805	PASS	FAM135B	CCDS6375.2	r.5585_5587delGAG	c.?	p.?	Del	3'UTR variant	D	139143642	139143647	3	81	863.67	-	-	1	1	1	FAM135B|CCDS6375.2|r.5585_5587delGAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FAM135B|CCDS6375.2|r.5585_5587delGAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	11	10	11	0	0	./.	8	8	9	8	30	27	30	27	9	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673453843	9	19971760	AATG	A	300	PASS	-	-	-	-	-	Del	-	D	19971760	19971780	3	10	269.909	-	-	6	1	-	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	1	4	1	5	8	26	8	26	1	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673456374	9	29849158	TGTACAGAAAA	T	435	PASS	-	-	-	-	-	Del	-	D	29849158	29849169	10	70	811.534	-	-	1	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	9	6	9	7	16	12	16	12	9	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673465098	9	75592848	AG	A	509	PASS	ALDH1A1	ENST00000419959	r.?	-	-	Del	intronic	D	75592848	75592851	1	30	486.318	-	-	2	1	1	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	4	5	5	7	13	18	13	18	5	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673469140	9	89244477	AG	A	660	PASS	-	-	-	-	-	Del	-	D	89244477	89244482	1	30	595.125	-	-	4	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	9	2	10	2	34	12	34	12	10	2	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673473598	9	104523436	AT	A	300	PASS	-	-	-	-	-	Del	-	D	104523436	104523444	1	10	270.511	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	4	1	12	19	12	19	4	1	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673474149	9	106354710	CT	C	340	PASS	-	-	-	-	-	Del	-	D	106354710	106354715	1	18	378.716	-	-	4	1	-	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	2	7	5	24	19	24	19	7	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673477368	9	115514013	CTGTCTGGGGCTCCATTCACCTCCGACGGCCTACCACTCTGTTTAGGTTTGGCAGAGGCTGGTTTTGTGGTTGATGGAAAGAAAGCTCGCCCTTTGACCTTCTTTGTACGGAGGGAGGCTCCAGATTTTCTTAGAGCAGCACAACCCTCCTGCTGCTTGGAGAGACAGCAGAGTCCAGGCAGGGGTAAGGGACGACCTCCTCCCTACCCCCATGGCCATTTCAGCTGTGAAGGAGACTTGAGCAGTGAT	C	261	PASS	SNX30	CCDS43865.1	r.?	-	-	Del	intronic	D	115514013	115514265	248	30	480.298	-	-	1	1	1	SNX30|CCDS43865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX30|CCDS43865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	5	0	0	13	8	17	13	4	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673492178	X	27208352	T	TA	538	PASS	-	-	-	-	-	Ins	-	I	27208352	27208362	1	35	534.151	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	19	0	0	./.	6	4	10	8	27	31	27	32	10	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673492298	X	27554246	TA	T	989	PASS	-	-	-	-	-	Del	-	D	27554246	27554252	1	88	919.315	-	-	5	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	7	10	9	14	21	31	21	31	9	14	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673493085	X	30638604	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	30638604	30638622	2	12	270.387	-	-	8	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	2	3	1	3	30	23	30	23	2	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673499777	X	62960242	AGGAGTCAGGTCCAAT	ACTCC	406	PASS	ARHGEF9	CCDS35315.1	r.?	-	-	Complex	intronic	DI	62960243	62960257	15	60	0	-	-	0	1	1	ARHGEF9|CCDS35315.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ARHGEF9|CCDS35315.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	5	9	0	0	25	29	25	29	5	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673504630	X	83850206	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	83850206	83850215	1	15	319.648	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	4	2	4	3	25	22	25	22	4	3	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673505844	X	88026005	AG	A	840	PASS	-	-	-	-	-	Del	-	D	88026005	88026007	1	60	756.481	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	9	5	11	8	19	26	19	26	11	8	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673510457	X	107063016	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	107063016	107063019	1	10	267.376	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	1	4	4	5	25	23	25	23	4	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673515408	X	126416314	GA	G	360	PASS	-	-	-	-	-	Del	-	D	126416314	126416318	1	12	324.464	-	-	3	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	1	5	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673516367	X	131336256	TA	T	480	PASS	RAP2C	CCDS14632.1	r.?	-	-	Del	downstream	D	131336256	131336263	1	24	431.415	-	-	6	1	1	RAP2C|CCDS14632.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RAP2C|CCDS14632.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	7	13	7	0	0	./.	5	3	7	4	23	21	23	21	7	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673516773	X	133266380	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	133266380	133266382	1	36	534.753	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	13	17	0	0	./.	5	5	7	5	22	21	22	22	7	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673516804	X	133375996	T	TA	420	PASS	CCDC160	CCDS48171.1	r.?	-	-	Ins	intronic	I	133375996	133376004	1	18	374.327	-	-	7	1	1	CCDC160|CCDS48171.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCDC160|CCDS48171.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	2	9	4	22	23	22	23	9	4	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673517289	X	135371680	CG	C	600	PASS	-	-	-	-	-	Del	-	D	135371680	135371684	1	35	532.947	-	-	3	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	6	4	7	9	21	34	21	34	7	9	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673520261	X	146631198	CT	C	509	PASS	-	-	-	-	-	Del	-	D	146631198	146631202	1	24	485.492	-	-	3	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	2	7	4	7	14	17	14	17	4	7	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673521662	X	153079941	C	CA	300	PASS	PDZD4	CCDS14732.1	r.?	-	-	Ins	intronic	I	153079941	153079942	1	6	267.376	-	-	0	1	1	PDZD4|CCDS14732.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDZD4|CCDS14732.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	1	12	1	12	0	0	./.	0	5	1	5	6	20	6	20	1	5	1	1	1	1	1	1	1	1
2586484	PD14452a	PD14452b	2673521949	X	154625905	AT	A	396	PASS	-	-	-	-	-	Del	-	D	154625905	154625908	1	20	378.541	-	-	2	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	3	7	4	26	20	26	20	7	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666784224	1	19344672	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	19344672	19344681	1	10	265.873	-	-	8	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	4	1	5	3	26	13	26	13	5	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666792927	1	46458604	C	CTT	360	PASS	MAST2	CCDS41326.1	r.?	-	-	Ins	intronic	I	46458604	46458608	2	12	315.436	-	-	3	1	1	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	1	5	2	7	9	21	9	21	2	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666795673	1	56743159	GATA	G	267	PASS	-	-	-	-	-	Del	-	D	56743159	56743163	3	16	322.66	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	3	3	5	4	17	19	17	19	5	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666828718	1	174589219	A	AGAGC	344	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Ins	intronic	I	174589219	174589220	4	81	821.896	-	-	0	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	8	8	1	0	22	24	26	27	9	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666828851	1	174921493	A	AAG	298	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Ins	intronic	I	174921493	174921495	2	15	307.007	-	-	0	1	-	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	2	12	2	0	0	./.	2	4	3	4	13	16	13	16	3	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666831039	1	181394676	CG	C	269	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181394676	181394678	1	12	268.884	-	-	1	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	2	3	8	6	11	12	11	12	8	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666832623	1	186757528	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	186757528	186757535	1	44	690.669	-	-	6	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	3	10	9	13	27	24	27	24	9	13	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666834752	1	192804319	AT	A	809	PASS	-	-	-	-	-	Del	-	D	192804319	192804321	1	64	751.67	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	7	7	10	10	25	25	25	25	10	10	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666838465	1	202440936	T	TA	449	PASS	PPP1R12B	CCDS30973.1	r.?	-	-	Ins	intronic	I	202440936	202440938	1	24	425.397	-	-	1	1	1	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	5	3	6	7	102	94	102	94	6	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666839299	1	203629225	A	AG	300	PASS	ATP2B4	CCDS1440.1	r.?	-	-	Ins	intronic	I	203629225	203629226	1	12	265.271	-	-	0	1	-	ATP2B4|CCDS1440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATP2B4|CCDS1440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	5	7	89	75	92	76	5	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666839511	1	203808102	AAG	A	540	PASS	ZC3H11A	CCDS30978.1	r.?	-	-	Del	intronic	D	203808102	203808106	2	10	473.755	-	-	1	1	-	ZC3H11A|CCDS30978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZC3H11A|CCDS30978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	9	0	13	0	106	71	106	71	16	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666839717	1	203966349	G	GTA	718	PASS	-	-	-	-	-	Ins	-	I	203966349	203966351	2	56	664.178	-	-	0	1	-	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	6	7	12	11	45	47	45	47	12	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666840247	1	204778484	TGTGAGATGGTAGTGGGATGCTTCCCAGAATGACAGCATCAGTCTTCTCTGAGTG	T	522	PASS	-	-	-	-	-	Del	-	D	204778484	204778546	54	99	967.981	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	8	10	0	0	57	50	65	60	8	10	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666840334	1	204992600	TA	T	360	PASS	NFASC	CCDS30982.1	r.?	-	-	Del	downstream	D	204992600	204992606	1	7	303.394	-	-	5	1	-	NFASC|CCDS30982.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NFASC|CCDS30982.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	14	8	14	0	0	./.	0	6	0	10	68	75	68	75	0	10	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666840533	1	205186233	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	205186233	205186237	2	6	264.067	-	-	1	1	-	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	5	0	14	0	98	65	98	65	14	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666842019	1	207893064	AAC	A	300	PASS	ENSG00000249058	ENST00000508064	r.?	-	-	Del	intronic	D	207893064	207893083	2	12	268.884	-	-	9	1	-	ENSG00000249058|ENST00000508064|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000249058|ENST00000508064|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	5	5	67	91	67	91	5	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666846334	1	221427616	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	221427616	221427626	1	12	265.873	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	3	17	22	18	23	2	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666856102	1	248087068	GC	G	420	PASS	OR2T8	CCDS31100.1	r.?	-	-	Del	downstream	D	248087068	248087070	1	20	376.437	-	-	1	1	1	OR2T8|CCDS31100.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR2T8|CCDS31100.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	7	16	7	0	0	./.	3	4	8	6	36	26	36	26	8	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666859561	10	8101709	C	CT	929	PASS	GATA3	CCDS31143.1	r.?	-	-	Ins	intronic	I	8101709	8101713	1	72	854.36	-	-	3	1	1	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	21	15	0	0	./.	5	11	7	15	12	23	12	23	7	15	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666869697	10	37542417	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	37542417	37542424	2	12	268.794	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	4	4	17	13	17	13	5	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666875837	10	57384890	A	AT	420	PASS	PCDH15	ENST00000373957	r.?	-	-	Ins	intronic	I	57384890	57384900	1	20	373.181	-	-	9	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	16	0	0	./.	3	4	4	6	18	14	18	15	4	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666880355	10	70887755	C	CT	660	PASS	VPS26A	CCDS7286.1	r.?	-	-	Ins	intronic	I	70887755	70887763	1	42	583.76	-	-	7	1	1	VPS26A|CCDS7286.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS26A|CCDS7286.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	15	10	0	0	./.	5	6	6	8	22	19	22	20	6	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666880489	10	71235935	AG	A	540	PASS	TSPAN15	CCDS7294.1	r.?	-	-	Del	intronic	D	71235935	71235938	1	30	485.996	-	-	2	1	1	TSPAN15|CCDS7294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSPAN15|CCDS7294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	4	5	7	5	17	15	17	15	7	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666881108	10	73209803	ATGTCT	A	269	PASS	CDH23	CCDS44429.1	r.?	-	-	Del	intronic	D	73209803	73209811	5	12	265.181	-	-	1	1	1	CDH23|CCDS44429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH23|CCDS44429.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	5	3	12	18	12	18	5	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666885051	10	87318026	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	87318026	87318033	1	12	266.988	-	-	6	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	3	2	4	4	16	20	16	21	4	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666886545	10	93357923	CAG	C	480	PASS	-	-	-	-	-	Del	-	D	93357923	93357928	2	21	431.997	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	6	2	6	3	21	20	21	20	6	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666898922	10	132133329	TCTC	T	269	PASS	-	-	-	-	-	Del	-	D	132133329	132133336	3	12	263.977	-	-	2	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	5	3	10	10	10	10	5	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666906008	11	17300260	C	CT	509	PASS	NUCB2	CCDS41623.1	r.?	-	-	Ins	intronic	I	17300260	17300267	1	30	481.172	-	-	6	1	1	NUCB2|CCDS41623.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NUCB2|CCDS41623.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	20	22	20	0	0	./.	4	5	5	5	25	22	25	23	5	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666914430	11	40867585	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	40867585	40867589	2	6	267.92	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	0	6	0	27	28	27	28	6	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666915246	11	43605136	TC	T	360	PASS	MIR129-2	ENST00000362207	r.?	-	-	Del	downstream	D	43605136	43605140	1	12	321.384	-	-	3	1	1	MIR129-2|ENST00000362207|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	MIR129-2|ENST00000362207|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	5	1	6	1	13	20	13	20	6	1	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666920234	11	61593751	TC	T	294	PASS	FADS2	CCDS8012.1	r.?	-	-	Del	upstream	D	61593751	61593753	1	10	270.328	-	-	1	1	1	FADS2|CCDS8012.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	FADS2|ENST00000257261|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	1	4	9	6	27	19	27	19	9	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666924989	11	74370870	TGG	T	660	PASS	-	-	-	-	-	Del	-	D	74370870	74370874	2	40	594.722	-	-	3	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	7	6	12	42	58	42	58	6	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666925461	11	75627164	CCTT	C	689	PASS	UVRAG	CCDS8241.1	r.?	-	-	Del	intronic	D	75627164	75627175	3	49	648.788	-	-	3	1	1	UVRAG|CCDS8241.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UVRAG|CCDS8241.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	6	6	9	7	35	26	35	26	9	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666934059	11	104070308	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	104070308	104070317	1	36	534.636	-	-	8	1	1	-	-	./.	0	0	0	0	18	16	18	17	0	0	./.	5	5	7	9	10	16	10	16	7	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666953278	12	28114538	T	TA	360	PASS	PTHLH	CCDS8715.1	r.?	-	-	Ins	downstream	I	28114538	28114543	1	7	320.008	-	-	4	1	1	PTHLH|CCDS8715.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PTHLH|CCDS44853.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	5	16	5	0	0	./.	6	0	8	1	29	6	29	6	8	1	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666969613	12	77843458	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	77843458	77843467	1	12	267.175	-	-	8	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	2	3	22	22	22	22	2	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666974217	12	93234634	ACTCTAAC	A	290	PASS	EEA1	CCDS31874.1	r.?	-	-	Del	intronic	D	93234634	93234643	7	32	540.37	-	-	1	1	1	EEA1|CCDS31874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEA1|CCDS31874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	7	3	8	4	23	20	23	20	8	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666981569	12	114103332	CCA	C	300	PASS	-	-	-	-	-	Del	-	D	114103332	114103349	2	12	268.981	-	-	8	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	3	2	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666986914	12	126680758	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	126680758	126680768	1	18	352.973	-	-	9	1	-	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	5	2	7	3	30	27	30	28	7	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666986922	12	126708077	AT	A	300	PASS	-	-	-	-	-	Del	-	D	126708077	126708087	1	10	270.185	-	-	9	1	1	-	-	./.	0	0	0	0	15	25	15	25	0	0	./.	1	4	3	5	16	22	16	22	3	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666995283	13	31658978	T	TC	780	PASS	-	-	-	-	-	Ins	-	I	31658978	31658984	1	56	694.247	-	-	5	1	1	-	-	./.	0	0	0	0	19	11	19	12	0	0	./.	6	7	11	10	30	26	31	27	11	10	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666995665	13	32574956	CT	C	939	PASS	-	-	-	-	-	Del	-	D	32574956	32574959	1	154	1243.84	-	-	2	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	13	10	17	16	29	36	29	36	17	16	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2666996281	13	33699440	CACT	C	1283	PASS	STARD13	CCDS9350.1	r.?	-	-	Del	intronic	D	33699440	33699445	3	126	1345.09	-	-	1	1	1	STARD13|CCDS9350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STARD13|CCDS9350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	5	20	25	32	38	58	39	59	26	33	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667001988	13	52693279	C	CA	360	PASS	NEK5	CCDS31979.1	r.?	-	-	Ins	intronic	I	52693279	52693285	1	12	321.811	-	-	5	1	1	NEK5|CCDS31979.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEK5|CCDS31979.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	1	5	3	6	57	52	57	52	3	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667007016	13	69935667	TA	T	300	PASS	-	-	-	-	-	Del	-	D	69935667	69935675	1	10	271.186	-	-	7	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	1	4	6	5	11	8	11	8	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667009495	13	78485190	T	TA	300	PASS	EDNRB	CCDS9461.1	r.?	-	-	Ins	intronic	I	78485190	78485196	1	10	268.176	-	-	5	1	1	EDNRB|CCDS9461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDNRB|CCDS9461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	6	5	10	16	10	16	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667011978	13	87402625	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	87402625	87402635	1	20	374.242	-	-	9	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	4	3	8	5	21	10	21	11	8	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667028367	14	39094264	ACCACCAACTGATCTTTGACAAAGTCAACAAAAATAAACAACAGGGAAAGTATACCCTATTAAATAAATGGTACTGAAAAAATTAGCTAGCCATACATAGAAAAATTGAAACTGGACCATCTCAAGATGAATTAATCCATCTTGAGATGG	A	307	PASS	-	-	-	-	-	Del	-	D	39094264	39094414	149	36	596.808	-	-	1	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	8	3	0	0	48	39	56	42	8	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667028712	14	39663624	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	39663624	39663625	1	10	264.052	-	-	0	1	1	-	-	./.	0	0	0	0	2	12	2	12	0	0	./.	1	4	1	5	11	39	11	40	1	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667030987	14	47250707	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	47250707	47250715	1	40	590.185	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	7	5	14	13	20	13	20	5	14	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667033785	14	57157683	G	GCAGACATCCGGTGA	286	PASS	-	-	-	-	-	Ins	-	I	57157683	57157684	14	32	451.642	-	-	0	1	1	-	-	./.	0	0	0	0	12	10	12	11	0	0	./.	3	7	2	5	28	36	29	38	3	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667034776	14	59553748	AAT	A	420	PASS	-	-	-	-	-	Del	-	D	59553748	59553752	2	20	379.787	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	5	7	12	13	12	13	5	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667046189	14	101575284	G	GC	660	PASS	-	-	-	-	-	Ins	-	I	101575284	101575289	1	30	590.185	-	-	4	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	9	4	12	11	15	11	15	4	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667060758	15	54761373	AT	A	480	PASS	UNC13C	CCDS45264.1	r.?	-	-	Del	intronic	D	54761373	54761380	1	24	434.128	-	-	6	1	1	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	5	4	9	17	18	17	18	4	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667073416	15	91616976	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	91616976	91616986	1	21	429.311	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	13	0	0	./.	2	6	3	8	20	20	20	20	3	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667074681	15	95312796	AG	A	300	PASS	-	-	-	-	-	Del	-	D	95312796	95312800	1	6	271.33	-	-	3	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	5	0	7	0	24	11	24	11	7	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667074832	15	95811624	G	GGT	569	PASS	-	-	-	-	-	Ins	-	I	95811624	95811625	2	32	514.965	-	-	0	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	3	7	0	0	27	20	27	20	3	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667086557	16	23861672	TA	T	480	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	intronic	D	23861672	23861681	1	25	433.526	-	-	8	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	4	6	8	18	19	18	19	6	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667089261	16	30616855	AC	A	540	PASS	ZNF689	CCDS10686.1	r.?	-	-	Del	intronic	D	30616855	30616861	1	28	487.717	-	-	5	1	1	ZNF689|CCDS10686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF689|CCDS10686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	6	3	7	6	26	18	26	18	7	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667092859	16	46815941	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	46815941	46815943	1	30	476.88	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	5	6	5	24	16	24	16	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667108574	17	998227	AGCTT	A	329	PASS	ABR	CCDS10999.1	r.?	-	-	Del	intronic	D	998227	998232	4	16	324.72	-	-	1	1	1	ABR|CCDS10999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABR|CCDS10999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	3	3	4	3	23	19	23	19	4	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667113071	17	10424119	AAC	A	300	PASS	MYH2	CCDS11156.1	r.?	-	-	Del	downstream	D	10424119	10424123	2	12	270.6	-	-	1	1	1	MYH2|CCDS11156.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	AC002347.1|ENST00000510453|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	3	7	18	15	18	15	3	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667115977	17	17780275	C	CA	780	PASS	TOM1L2	CCDS42270.1	r.?	-	-	Ins	intronic	I	17780275	17780277	1	56	695.734	-	-	1	1	1	TOM1L2|CCDS42270.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TOM1L2|CCDS42270.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	7	6	9	6	22	13	22	13	9	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667127390	17	48865017	G	GT	389	PASS	-	-	-	-	-	Ins	-	I	48865017	48865027	1	20	368.003	-	-	9	1	-	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	4	3	7	5	94	95	94	96	8	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667129794	17	54694003	GGAGT	G	3033	PASS	-	-	-	-	-	Del	-	D	54694003	54694008	4	756	2864.75	-	-	1	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	27	26	38	36	52	53	53	53	39	36	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667133371	17	58685455	CAT	C	1080	PASS	PPM1D	CCDS11625.1	r.?	-	-	Del	intronic	D	58685455	58685459	2	96	972.957	-	-	1	1	1	PPM1D|CCDS11625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPM1D|CCDS11625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	11	7	12	8	128	123	128	123	12	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667135775	17	61899577	G	GT	300	PASS	DDX42	CCDS32704.1	r.?	-	-	Ins	downstream	I	61899577	61899587	1	12	267.59	-	-	9	1	1	DDX42|CCDS32704.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	FTSJ3|CCDS11644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	4	7	97	75	98	75	4	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667144986	18	195142	TC	T	420	PASS	USP14	CCDS32780.1	r.?	-	-	Del	intronic	D	195142	195144	1	20	379.609	-	-	1	1	1	USP14|CCDS32780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP14|CCDS32780.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	4	5	7	23	17	23	17	5	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667149755	18	13247959	C	CCTT	358	PASS	C18orf1	CCDS32793.1	r.?	-	-	Ins	intronic	I	13247959	13247960	3	20	360.945	-	-	0	1	1	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	10	9	0	0	./.	3	4	2	1	24	27	25	27	5	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667152118	18	21733618	G	GTTAC	418	PASS	CABYR	CCDS11881.1	r.?	-	-	Ins	intronic	I	21733618	21733623	4	25	414.573	-	-	1	1	1	CABYR|CCDS11881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CABYR|CCDS11881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	4	4	5	8	18	21	18	21	5	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667161032	18	49258872	AT	A	660	PASS	-	-	-	-	-	Del	-	D	49258872	49258880	1	40	595.324	-	-	7	1	1	-	-	./.	0	0	0	0	8	25	8	25	0	0	./.	4	7	7	10	19	32	19	32	7	10	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667161090	18	49505948	GA	G	480	PASS	-	-	-	-	-	Del	-	D	49505948	49505950	1	25	433.839	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	4	5	5	29	23	29	23	5	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667161567	18	50827152	AT	A	780	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50827152	50827161	1	50	704.988	-	-	8	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	9	4	13	7	27	17	27	17	13	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667168776	18	69428350	CTT	C	989	PASS	-	-	-	-	-	Del	-	D	69428350	69428354	2	84	921.907	-	-	3	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	6	11	11	13	21	23	21	23	11	13	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667177693	19	14769843	C	CT	300	PASS	EMR3	CCDS12315.1	r.?	-	-	Ins	intronic	I	14769843	14769853	1	12	267.217	-	-	9	1	1	EMR3|CCDS12315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EMR3|CCDS12315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	13	8	0	0	./.	3	2	3	2	16	18	16	18	3	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667180183	19	19976512	CTCTT	C	457	PASS	ZNF90	CCDS42532.1	r.?	-	-	Del	upstream	D	19976512	19976521	4	25	434.291	-	-	2	1	1	ZNF90|CCDS42532.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AC011477.2|ENST00000499171|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	4	4	4	20	16	20	16	4	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667186722	19	37857295	AGTTT	A	900	PASS	ZNF527	CCDS42559.1	r.?	-	-	Del	upstream	D	37857295	37857308	4	66	814.295	-	-	3	1	1	ZNF527|CCDS42559.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF527|CCDS42559.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	18	11	18	0	0	./.	5	10	8	11	25	31	25	31	8	11	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667198825	2	5445885	GAAAGAAAGAAAGAAAGAAAGAA	G	288	PASS	-	-	-	-	-	Del	-	D	5445885	5445909	22	12	269.085	-	-	1	1	-	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	2	3	0	0	21	16	21	16	2	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667203010	2	18299751	AG	A	720	PASS	-	-	-	-	-	Del	-	D	18299751	18299753	1	48	643.395	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	7	5	7	18	21	18	21	5	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667203275	2	19156896	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	19156896	19156903	1	20	372.504	-	-	6	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	5	4	27	22	27	22	5	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667208895	2	35470379	GTC	G	660	PASS	-	-	-	-	-	Del	-	D	35470379	35470386	2	42	591.986	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	6	6	9	20	23	20	23	6	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667216657	2	58455066	G	GA	540	PASS	FANCL	CCDS46294.1	r.?	-	-	Ins	intronic	I	58455066	58455076	1	30	474.719	-	-	9	1	1	FANCL|CCDS46294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FANCL|CCDS46294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	4	7	4	29	17	29	17	7	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667222107	2	76394686	GT	G	360	PASS	-	-	-	-	-	Del	-	D	76394686	76394694	1	15	322.901	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	2	6	2	14	13	14	13	6	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667223343	2	80308568	TG	T	420	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80308568	80308573	1	20	376.718	-	-	4	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	3	6	3	22	10	22	10	6	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667225824	2	88454080	C	CA	658	PASS	-	-	-	-	-	Ins	-	I	88454080	88454087	1	48	638.578	-	-	6	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	5	7	6	10	14	28	14	28	6	10	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667253885	2	181237270	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	181237270	181237277	1	7	319.289	-	-	6	1	1	-	-	./.	0	0	0	0	14	18	15	18	0	0	./.	0	6	2	7	18	26	18	27	2	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667263479	2	211460794	TG	T	720	PASS	CPS1	CCDS2393.1	r.?	-	-	Del	intronic	D	211460794	211460800	1	45	644.599	-	-	5	1	1	CPS1|CCDS2393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPS1|CCDS2393.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	8	4	9	5	24	15	24	15	9	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667272345	2	236979890	T	TC	600	PASS	AGAP1	CCDS33408.1	r.?	-	-	Ins	intronic	I	236979890	236979893	1	36	532.148	-	-	2	1	1	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	13	0	0	./.	5	5	7	6	26	17	26	17	7	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667279682	20	13915421	G	GT	360	PASS	SEL1L2	CCDS42852.1	r.?	-	-	Ins	intronic	I	13915421	13915431	1	12	322.164	-	-	9	1	1	SEL1L2|CCDS42852.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEL1L2|CCDS42852.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	5	1	6	5	28	20	29	20	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667297885	20	60297559	TC	T	300	PASS	CDH4	CCDS13488.1	r.?	-	-	Del	intronic	D	60297559	60297566	1	12	271.48	-	-	6	1	1	CDH4|CCDS13488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH4|CCDS13488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	4	3	21	28	21	28	4	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667306153	21	24793927	TA	T	749	PASS	-	-	-	-	-	Del	-	D	24793927	24793934	1	50	704.364	-	-	6	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	9	4	10	5	21	10	21	10	10	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667308925	21	32351494	CTTTG	C	269	PASS	-	-	-	-	-	Del	-	D	32351494	32351503	4	10	272.299	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	4	2	12	5	12	5	4	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667314156	21	47256853	GT	G	540	PASS	PCBP3	CCDS42974.2	r.?	-	-	Del	intronic	D	47256853	47256859	1	28	487.729	-	-	5	1	1	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	6	5	9	10	17	10	17	5	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667327050	22	48152671	AC	A	300	PASS	-	-	-	-	-	Del	-	D	48152671	48152675	1	10	273.042	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	1	4	6	5	18	20	18	20	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667334120	3	15142602	TG	T	292	PASS	ZFYVE20	CCDS2623.1	r.?	-	-	Del	upstream	D	15142602	15142604	1	6	262.866	-	-	1	1	-	ZFYVE20|CCDS2623.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZFYVE20|CCDS2623.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	7	13	7	0	0	./.	5	0	8	0	164	160	164	160	8	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667335382	3	19301059	GC	G	660	PASS	KCNH8	CCDS2632.1	r.?	-	-	Del	intronic	D	19301059	19301064	1	40	592.876	-	-	4	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	7	8	12	16	25	16	25	8	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667338416	3	28821085	TGA	T	660	PASS	-	-	-	-	-	Del	-	D	28821085	28821089	2	40	592.876	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	7	4	8	4	22	16	22	16	8	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667339939	3	33493697	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	33493697	33493704	2	18	377.285	-	-	3	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	2	6	5	21	19	21	19	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667344925	3	49791376	AAATCAAAGCAAAATACAG	A	290	PASS	IP6K1	CCDS43092.1	r.?	-	-	Del	intronic	D	49791376	49791397	18	35	536.57	-	-	1	1	1	IP6K1|CCDS43092.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IP6K1|CCDS43092.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	6	4	6	4	18	16	18	16	6	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667349347	3	63175280	GT	G	840	PASS	-	-	-	-	-	Del	-	D	63175280	63175284	1	63	754.57	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	8	6	14	9	26	19	26	19	14	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667350023	3	65429744	G	GT	420	PASS	MAGI1	CCDS33781.1	r.?	-	-	Ins	intronic	I	65429744	65429750	1	14	373.07	-	-	5	1	1	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	1	6	1	8	19	23	20	24	1	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667360083	3	99575682	AGT	A	480	PASS	FILIP1L	CCDS43118.1	r.?	-	-	Del	intronic	D	99575682	99575685	2	24	431.183	-	-	1	1	1	FILIP1L|CCDS43118.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FILIP1L|CCDS43118.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	5	3	6	5	16	24	16	24	6	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667361727	3	104611932	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	104611932	104611942	1	36	585.049	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	3	8	6	13	27	28	27	28	6	13	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667364410	3	112720908	C	CA	480	PASS	C3orf17	CCDS33824.1	r.?	-	-	Ins	downstream	I	112720908	112720917	1	25	426.366	-	-	8	1	1	C3orf17|CCDS33824.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	C3orf17|CCDS33824.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	18	21	18	21	0	0	./.	4	4	5	5	28	23	28	23	5	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667375406	3	147508383	GT	G	600	PASS	-	-	-	-	-	Del	-	D	147508383	147508388	1	32	538.978	-	-	4	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	7	3	9	7	26	18	26	18	9	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667379071	3	158974887	C	CTA	480	PASS	IQCJ	CCDS46947.1	r.?	-	-	Ins	intronic	I	158974887	158974891	2	25	421.55	-	-	1	1	1	IQCJ|CCDS46947.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IQCJ|CCDS46947.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	13	12	0	0	./.	4	4	5	6	19	20	20	20	5	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667379195	3	159707052	GGA	G	600	PASS	IL12A	CCDS3187.1	r.?	-	-	Del	intronic	D	159707052	159707059	2	27	538.978	-	-	3	1	1	IL12A|CCDS3187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL12A|CCDS3187.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	8	2	9	2	27	14	27	14	9	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667380861	3	164924101	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	164924101	164924111	1	16	319.775	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	4	4	27	23	28	23	4	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667382758	3	171158651	CAGAA	C	300	PASS	TNIK	CCDS46956.1	r.?	-	-	Del	intronic	D	171158651	171158659	4	12	269.489	-	-	1	1	1	TNIK|CCDS46956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNIK|CCDS46956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	3	2	4	2	20	13	20	13	4	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667385789	3	180256998	T	TA	389	PASS	-	-	-	-	-	Ins	-	I	180256998	180257004	1	20	373.07	-	-	5	1	1	-	-	./.	0	0	0	0	19	15	21	15	0	0	./.	3	4	5	7	16	21	17	21	5	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667392386	4	310230	C	CA	360	PASS	ENSG00000186777	ENST00000414523	r.?	-	-	Ins	intronic	I	310230	310240	1	15	319.642	-	-	9	1	1	ENSG00000186777|ENST00000414523|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000186777|ENST00000414523|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	4	2	5	3	23	32	24	32	5	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667393684	4	3783556	GGAA	G	660	PASS	-	-	-	-	-	Del	-	D	3783556	3783562	3	40	592.634	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	7	4	11	5	19	26	19	26	11	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667420109	4	82743040	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	82743040	82743049	1	10	266.369	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	1	4	1	4	18	18	18	18	1	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667435192	4	130350217	TTTG	T	389	PASS	-	-	-	-	-	Del	-	D	130350217	130350232	3	20	375.926	-	-	4	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	3	4	3	4	13	25	13	25	3	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667435792	4	132424256	G	GGT	509	PASS	-	-	-	-	-	Ins	-	I	132424256	132424257	2	30	468.627	-	-	0	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	5	1	1	24	22	24	22	5	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667445855	4	162901106	C	CA	600	PASS	FSTL5	CCDS3802.1	r.?	-	-	Ins	intronic	I	162901106	162901110	1	35	532.737	-	-	3	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	21	7	21	0	0	./.	4	6	4	7	15	21	15	22	4	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667458984	5	3216492	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	3216492	3216501	1	42	586.176	-	-	8	1	1	-	-	./.	0	0	0	0	19	21	20	21	0	0	./.	6	5	8	5	36	27	36	27	8	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667459333	5	4047367	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	4047367	4047373	1	20	373.404	-	-	5	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	4	3	5	4	29	32	29	32	5	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667460817	5	8094417	GC	G	300	PASS	-	-	-	-	-	Del	-	D	8094417	8094419	1	10	269.728	-	-	1	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	4	1	4	4	29	22	29	22	4	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667460883	5	8244925	TG	T	300	PASS	-	-	-	-	-	Del	-	D	8244925	8244929	1	12	269.728	-	-	3	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	3	2	5	2	30	18	30	18	5	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667463195	5	14381892	TA	T	720	PASS	TRIO	CCDS3883.1	r.?	-	-	Del	intronic	D	14381892	14381897	1	49	647.346	-	-	4	1	1	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIO|CCDS3883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	6	6	9	7	32	28	32	28	9	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667465721	5	20364375	GAC	G	300	PASS	CDH18	CCDS3652.1	r.?	-	-	Del	intronic	D	20364375	20364395	2	10	269.728	-	-	9	1	-	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	4	1	4	1	28	33	28	33	4	1	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667468243	5	27183420	TC	T	300	PASS	-	-	-	-	-	Del	-	D	27183420	27183422	1	10	269.728	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	2	5	36	29	36	29	2	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667471466	5	34968984	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	34968984	34968993	1	16	319.459	-	-	8	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	3	3	5	3	28	19	28	20	5	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667473469	5	40293817	TC	T	300	PASS	-	-	-	-	-	Del	-	D	40293817	40293819	1	6	267.921	-	-	1	1	-	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	0	10	0	27	22	27	22	10	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667474898	5	44576247	G	GT	853	PASS	-	-	-	-	-	Ins	-	I	44576247	44576251	1	90	906.839	-	-	3	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	9	8	9	23	30	23	30	8	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667478059	5	57974767	TG	T	360	PASS	RAB3C	CCDS3976.1	r.?	-	-	Del	intronic	D	57974767	57974769	1	15	323.673	-	-	1	1	1	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	4	2	4	12	12	12	12	2	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667483450	5	76386407	A	AG	480	PASS	ZBED3	CCDS4036.1	r.?	-	-	Ins	upstream	I	76386407	76386408	1	24	426.748	-	-	0	1	1	ZBED3|CCDS4036.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZBED3|CCDS4036.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	11	9	11	0	0	./.	3	5	4	6	19	16	19	16	4	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667492948	5	109097110	AT	A	540	PASS	MAN2A1	CCDS34209.1	r.?	-	-	Del	intronic	D	109097110	109097116	1	24	483.703	-	-	5	1	1	MAN2A1|CCDS34209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAN2A1|CCDS34209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	7	2	7	3	15	11	15	11	7	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667521578	6	15248667	T	TGGGAGCGGGGGCGGGGGC	290	PASS	JARID2	CCDS4533.1	r.?	-	-	Ins	intronic	I	15248667	15248687	18	11	417.762	-	-	1	1	1	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JARID2|CCDS4533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	3	11	3	0	0	./.	10	0	5	0	48	15	52	15	11	0	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667521841	6	15757222	GCC	G	941	PASS	-	-	-	-	-	Del	-	D	15757222	15757226	2	90	916.341	-	-	3	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	8	9	11	12	37	43	37	43	11	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667525920	6	23417520	G	GT	1287	PASS	-	-	-	-	-	Ins	-	I	23417520	23417522	1	136	1191.2	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	7	16	25	22	41	36	41	36	25	22	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667539977	6	57824425	TC	T	495	PASS	-	-	-	-	-	Del	-	D	57824425	57824427	1	30	485.441	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	5	7	8	24	18	24	18	7	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667541525	6	66104905	AC	A	420	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	66104905	66104908	1	14	375.759	-	-	2	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	1	7	3	27	15	27	15	7	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667541686	6	66429753	GT	G	300	PASS	-	-	-	-	-	Del	-	D	66429753	66429758	1	12	269.689	-	-	4	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	2	3	3	19	16	19	16	3	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667545675	6	78326207	A	AT	449	PASS	-	-	-	-	-	Ins	-	I	78326207	78326216	1	21	426.686	-	-	8	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	6	2	8	5	18	24	18	24	8	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667547301	6	83442320	TA	T	689	PASS	-	-	-	-	-	Del	-	D	83442320	83442325	1	49	646.05	-	-	4	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	6	6	7	6	22	22	22	22	7	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667556061	6	112165022	TA	T	840	PASS	FYN	CCDS5095.1	r.?	-	-	Del	intronic	D	112165022	112165025	1	55	755.13	-	-	2	1	1	FYN|CCDS5095.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FYN|CCDS5095.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	10	4	11	4	24	10	24	10	11	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667562324	6	133163264	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	133163264	133163272	1	18	479.42	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	16	14	0	0	./.	1	8	2	9	16	22	16	22	2	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667566758	6	148735623	TA	T	300	PASS	SASH1	CCDS5212.1	r.?	-	-	Del	intronic	D	148735623	148735627	1	12	269.689	-	-	3	1	1	SASH1|CCDS5212.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SASH1|CCDS5212.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	2	3	12	16	12	16	2	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667578021	7	7369422	GA	G	480	PASS	-	-	-	-	-	Del	-	D	7369422	7369426	1	21	425.264	-	-	3	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	6	2	9	6	28	26	28	26	9	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667586605	7	31492667	G	GT	1469	PASS	-	-	-	-	-	Ins	-	I	31492667	31492676	1	176	1331.58	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	10	15	11	18	25	39	25	39	11	18	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667589489	7	39680188	G	GT	780	PASS	RALA	CCDS5460.1	r.?	-	-	Ins	intronic	I	39680188	39680196	1	56	693.988	-	-	7	1	1	RALA|CCDS5460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RALA|CCDS5460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	7	6	8	8	29	25	29	25	8	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667592879	7	49594700	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	49594700	49594701	1	15	315.486	-	-	0	1	1	-	-	./.	0	0	0	0	3	9	3	10	0	0	./.	2	4	0	0	26	23	27	23	2	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667611119	7	103075906	AC	A	420	PASS	SLC26A5	CCDS5733.1	r.?	-	-	Del	intronic	D	103075906	103075908	1	14	377.9	-	-	1	1	1	SLC26A5|CCDS5733.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC26A5|CCDS5733.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	6	1	8	4	19	11	19	11	8	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667618401	7	129477182	GT	G	538	PASS	UBE2H	CCDS5814.1	r.?	-	-	Del	intronic	D	129477182	129477186	1	36	539.858	-	-	3	1	1	UBE2H|CCDS5814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2H|CCDS5814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	5	7	7	14	21	14	21	7	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667628486	8	2268668	AT	A	323	PASS	-	-	-	-	-	Del	-	D	2268668	2268676	1	25	429.318	-	-	7	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	4	4	4	5	28	24	28	24	4	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667632190	8	13788413	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	13788413	13788423	1	18	369.934	-	-	9	1	1	-	-	./.	0	0	0	0	32	17	32	17	0	0	./.	5	2	7	3	18	13	18	13	7	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667638657	8	36272477	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	36272477	36272486	1	36	587.001	-	-	8	1	1	-	-	./.	0	0	0	0	16	10	16	11	0	0	./.	8	3	10	3	18	6	18	6	10	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667640296	8	39194492	CCT	C	900	PASS	-	-	-	-	-	Del	-	D	39194492	39194496	2	70	808.884	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	9	14	11	60	47	60	47	14	11	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667640309	8	39232939	ATAT	A	387	PASS	-	-	-	-	-	Del	-	D	39232939	39232945	3	16	431.726	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	7	1	12	1	52	40	52	40	12	1	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667640335	8	39307124	CAG	C	869	PASS	-	-	-	-	-	Del	-	D	39307124	39307128	2	70	808.282	-	-	1	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	6	9	8	12	36	53	36	53	8	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667641906	8	42071511	CTTAA	C	1895	PASS	-	-	-	-	-	Del	-	D	42071511	42071526	4	304	1780.27	-	-	3	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	15	18	23	25	49	48	49	48	23	25	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667642559	8	43291414	TG	T	420	PASS	-	-	-	-	-	Del	-	D	43291414	43291419	1	20	377.76	-	-	4	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	4	7	7	32	32	32	32	7	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667649008	8	67618889	G	GT	300	PASS	C8orf44	CCDS6193.1	r.?	-	-	Ins	intronic	I	67618889	67618899	1	12	260.196	-	-	9	1	1	C8orf44|CCDS6193.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	C8orf44|CCDS6193.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	15	0	0	./.	2	3	2	4	28	34	30	34	2	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667650892	8	73573267	AT	A	300	PASS	KCNB2	CCDS6209.1	r.?	-	-	Del	intronic	D	73573267	73573277	1	12	269.829	-	-	9	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	2	6	18	29	18	29	2	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667654063	8	83179083	GAAAAAATACAACTGACAATATGGAACCAATAAAAATA	G	406	PASS	-	-	-	-	-	Del	-	D	83179083	83179126	37	63	754.317	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	8	0	0	36	34	39	38	6	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667654709	8	84914427	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	84914427	84914437	1	12	266.216	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	3	2	3	2	50	38	51	38	3	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667655371	8	86990008	GAAC	G	300	PASS	-	-	-	-	-	Del	-	D	86990008	86990023	3	12	269.829	-	-	4	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	3	2	3	32	40	32	40	2	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667656056	8	88553853	TA	T	660	PASS	-	-	-	-	-	Del	-	D	88553853	88553858	1	40	593.021	-	-	4	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	4	7	6	7	24	34	24	34	6	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667657731	8	93689048	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	93689048	93689055	1	12	266.819	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	4	3	38	38	38	38	4	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667659728	8	98378172	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	98378172	98378176	1	12	266.819	-	-	3	1	1	-	-	./.	0	0	0	0	17	10	17	11	0	0	./.	2	3	3	3	40	35	41	35	3	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667661679	8	102629327	C	CTTT	364	PASS	GRHL2	CCDS34931.1	r.?	-	-	Ins	intronic	I	102629327	102629336	3	24	416.073	-	-	8	1	1	GRHL2|CCDS34931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRHL2|CCDS34931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	3	5	4	8	44	54	45	54	4	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667662819	8	104914860	CTT	C	420	PASS	RIMS2	ENST00000507740	r.?	-	-	Del	intronic	D	104914860	104914863	2	20	377.76	-	-	2	1	1	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	7	5	32	36	32	36	7	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667663874	8	107563079	CCT	C	420	PASS	OXR1	CCDS47909.1	r.?	-	-	Del	intronic	D	107563079	107563082	2	18	375.352	-	-	1	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	2	5	4	41	44	41	44	5	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667667413	8	117329433	G	GA	660	PASS	AF130342.1	ENST00000505156	r.?	-	-	Ins	intronic	I	117329433	117329442	1	42	586.399	-	-	8	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	5	6	8	7	42	38	42	38	8	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667667614	8	117804546	TC	T	269	PASS	-	-	-	-	-	Del	-	D	117804546	117804548	1	6	247.553	-	-	1	1	-	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	0	5	0	7	31	50	31	50	0	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667669877	8	122888802	CAATGT	C	449	PASS	-	-	-	-	-	Del	-	D	122888802	122888808	5	25	431.124	-	-	1	1	-	-	-	./.	0	0	0	0	8	4	9	4	0	0	./.	4	4	5	5	45	48	47	49	5	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667670146	8	123531410	CAGAG	C	1676	PASS	-	-	-	-	-	Del	-	D	123531410	123531417	4	256	1618.97	-	-	3	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	15	15	24	17	51	31	51	31	24	17	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667673857	8	131178797	TGTAG	T	1107	PASS	ASAP1	CCDS6362.1	r.?	-	-	Del	intronic	D	131178797	131178804	4	120	1073.9	-	-	1	1	1	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	11	9	12	13	45	62	45	62	12	13	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667673992	8	131475895	CCT	C	720	PASS	-	-	-	-	-	Del	-	D	131475895	131475898	2	49	645.181	-	-	1	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	6	6	8	6	46	38	46	38	8	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667678390	8	142322324	CTG	C	840	PASS	-	-	-	-	-	Del	-	D	142322324	142322327	2	63	753.715	-	-	1	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	8	6	10	8	28	29	28	29	10	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667678950	8	144280830	CATGCTGT	C	290	PASS	-	-	-	-	-	Del	-	D	144280830	144280843	7	36	539.658	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	5	6	6	20	19	20	19	6	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667679463	8	146003712	CAG	C	660	PASS	ZNF34	CCDS47945.1	r.?	-	-	Del	intronic	D	146003712	146003715	2	42	591.215	-	-	1	1	1	ZNF34|CCDS47945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF34|CCDS47945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	5	6	7	7	19	20	19	20	7	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667688326	9	30192959	CTT	C	449	PASS	-	-	-	-	-	Del	-	D	30192959	30192965	2	16	431.707	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	7	1	10	5	50	60	50	60	10	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667688327	9	30196699	CCT	C	1260	PASS	-	-	-	-	-	Del	-	D	30196699	30196702	2	120	1135.79	-	-	1	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	7	14	9	14	55	57	55	57	9	14	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667688370	9	30275720	TGTG	T	428	PASS	-	-	-	-	-	Del	-	D	30275720	30275726	3	60	757.594	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	9	5	11	41	64	42	64	6	11	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667688727	9	31112004	ACT	A	540	PASS	-	-	-	-	-	Del	-	D	31112004	31112007	2	28	486.423	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	6	4	9	52	56	52	56	4	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667688729	9	31114669	TAG	T	869	PASS	-	-	-	-	-	Del	-	D	31114669	31114673	2	52	809.902	-	-	1	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	12	3	13	3	46	35	46	35	13	3	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667688733	9	31125047	ACT	A	517	PASS	-	-	-	-	-	Del	-	D	31125047	31125051	2	28	483.412	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	3	5	4	36	55	37	55	6	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667696836	9	77447774	CT	C	720	PASS	TRPM6	CCDS6647.1	r.?	-	-	Del	intronic	D	77447774	77447776	1	45	647.56	-	-	1	1	1	TRPM6|CCDS6647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM6|CCDS6647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	4	8	6	12	12	16	12	16	6	12	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667703942	9	103244485	TC	T	420	PASS	TMEFF1	CCDS6750.1	r.?	-	-	Del	intronic	D	103244485	103244487	1	20	370.97	-	-	1	1	1	TMEFF1|CCDS6750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEFF1|CCDS6750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	6	4	23	34	23	34	6	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667707271	9	112830798	T	TTA	300	PASS	PALM2-AKAP2	CCDS35100.1	r.?	-	-	Ins	intronic	I	112830798	112830799	2	10	262.742	-	-	0	1	1	PALM2-AKAP2|CCDS35100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PALM2-AKAP2|CCDS35100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	6	1	23	42	25	42	6	1	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667716815	9	139860191	A	AAAAAACAAAC	290	PASS	C9orf141	ENST00000371629	r.?	-	-	Ins	upstream	I	139860191	139860197	10	35	452.636	-	-	0	1	1	C9orf141|ENST00000371629|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C9orf141|ENST00000371629|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	6	9	6	9	0	0	./.	4	6	0	0	16	14	16	15	4	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667716955	9	140394362	GTGCGGAGGACTTCCAGAAAACACACACAGAACGGCTCAAGCCACCAGAGGCGAGAGCTGGGGTTAAACTGAACCCCAGGCTCCAGGAGATTCTGGACCTGACAGAGCAGAA	G	319	PASS	PNPLA7	CCDS48070.1	r.?	-	-	Del	intronic	D	140394362	140394477	111	40	556.118	-	-	1	1	1	PNPLA7|CCDS48070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PNPLA7|CCDS48070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	7	4	0	0	5	12	12	16	7	4	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667718525	X	6586041	A	AT	689	PASS	-	-	-	-	-	Ins	-	I	6586041	6586046	1	49	642.679	-	-	4	1	1	-	-	./.	0	0	0	0	14	8	14	9	0	0	./.	6	6	12	6	25	20	26	21	12	6	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667720261	X	14175853	TA	T	746	PASS	-	-	-	-	-	Del	-	D	14175853	14175862	1	56	699.848	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	7	6	11	9	24	21	24	21	11	9	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667723513	X	27478340	C	CT	389	PASS	-	-	-	-	-	Ins	-	I	27478340	27478347	1	18	374.896	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	2	6	2	28	15	28	15	6	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667727892	X	45621189	TA	T	540	PASS	-	-	-	-	-	Del	-	D	45621189	45621192	1	30	487.428	-	-	2	1	1	-	-	./.	0	0	0	0	6	20	6	20	0	0	./.	4	5	5	7	20	21	20	21	5	7	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667731714	X	66662717	TTTTC	T	660	PASS	-	-	-	-	-	Del	-	D	66662717	66662725	4	40	595.745	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	7	4	8	5	21	19	21	19	8	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667734303	X	77698651	CA	C	509	PASS	-	-	-	-	-	Del	-	D	77698651	77698653	1	30	487.428	-	-	1	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	5	4	7	5	24	25	24	25	7	5	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667737376	X	89290296	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	89290296	89290297	1	12	259.354	-	-	0	1	1	-	-	./.	0	0	0	0	10	14	11	14	0	0	./.	3	2	1	0	25	24	25	24	4	2	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667745552	X	124674272	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	124674272	124674282	1	14	374.896	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	8	0	0	./.	1	6	1	8	9	14	9	14	1	8	1	1	1	1	1	1	1	1
2579553	PD14466a	PD14466b	2667750111	X	146142635	CAATGAGGCATTCTCA	C	290	PASS	-	-	-	-	-	Del	-	D	146142635	146142652	15	27	541.586	-	-	1	1	1	-	-	./.	0	0	0	0	29	13	29	13	0	0	./.	8	2	7	2	19	10	20	10	8	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667962008	1	17961	TG	T	370	PASS	-	-	-	-	-	Del	-	D	17961	17964	1	11	532.44	-	-	2	1	1	-	-	./.	0	0	0	0	0	14	0	14	0	0	./.	0	10	0	14	0	46	0	46	0	14	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667969841	1	23667870	TAC	T	300	PASS	HNRNPR	CCDS232.1	r.?	-	-	Del	intronic	D	23667870	23667876	2	12	268.628	-	-	2	1	1	HNRNPR|CCDS232.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HNRNPR|CCDS232.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	3	5	10	11	10	11	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667975206	1	37105244	CTG	C	600	PASS	-	-	-	-	-	Del	-	D	37105244	37105249	2	36	537.257	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	5	9	6	25	27	25	27	9	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667975904	1	39184183	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	39184183	39184192	1	35	530.032	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	6	4	8	6	31	34	31	34	8	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667977174	1	41489031	TG	T	660	PASS	SLFNL1	CCDS460.1	r.?	-	-	Del	upstream	D	41489031	41489036	1	42	590.983	-	-	4	1	1	SLFNL1|CCDS460.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AL110502.1|ENST00000421714|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	6	6	7	28	21	28	21	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667977193	1	41523085	C	CT	480	PASS	SCMH1	CCDS30688.1	r.?	-	-	Ins	intronic	I	41523085	41523095	1	25	412.948	-	-	9	1	1	SCMH1|CCDS30688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCMH1|CCDS30688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	4	4	7	5	36	32	36	32	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667977931	1	43521315	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	43521315	43521316	1	21	424.989	-	-	0	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	2	6	4	7	19	25	19	25	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667978764	1	45492987	CTGAT	C	478	PASS	ZSWIM5	CCDS41319.1	r.?	-	-	Del	intronic	D	45492987	45492994	4	28	483.531	-	-	1	1	1	ZSWIM5|CCDS41319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZSWIM5|CCDS41319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	6	3	8	6	29	37	29	37	8	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667979234	1	46229656	C	CCA	447	PASS	-	-	-	-	-	Ins	-	I	46229656	46229657	2	24	436.57	-	-	0	1	-	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	2	7	1	3	34	38	35	38	3	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667983978	1	59074048	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	59074048	59074055	1	18	370.661	-	-	6	1	1	-	-	./.	0	0	0	0	13	9	14	9	0	0	./.	2	5	5	6	35	25	36	26	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667988629	1	71256565	ACTGT	A	538	PASS	-	-	-	-	-	Del	-	D	71256565	71256572	4	36	536.655	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	5	6	6	25	24	25	24	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667989282	1	73493840	CA	C	300	PASS	-	-	-	-	-	Del	-	D	73493840	73493847	1	12	268.026	-	-	6	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	3	2	4	5	24	26	24	26	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667989437	1	73800413	GT	G	360	PASS	-	-	-	-	-	Del	-	D	73800413	73800420	1	15	322.354	-	-	6	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	2	6	4	24	26	24	26	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667991226	1	78778083	CA	C	269	PASS	PTGFR	CCDS686.1	r.?	-	-	Del	intronic	D	78778083	78778087	1	12	268.628	-	-	3	1	1	PTGFR|CCDS686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTGFR|CCDS686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	3	6	16	24	16	24	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667991618	1	80037785	TATATACATATATATCACATATGATAGATGATACATATACATATATATCACATATGATAGATGATACATATACATATATATCACATATGATAGATGATACATATACATATATCACATATGATAGATGATAC	T	337	PASS	-	-	-	-	-	Del	-	D	80037785	80037928	130	16	321.752	-	-	1	1	-	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	3	3	0	0	23	1	25	4	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667997636	1	95482675	TAAA	T	300	PASS	ALG14	CCDS752.1	r.?	-	-	Del	intronic	D	95482675	95482682	3	12	268.628	-	-	6	1	1	ALG14|CCDS752.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALG14|CCDS752.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	5	3	22	12	22	12	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667998864	1	99198649	CA	C	360	PASS	SNX7	CCDS755.2	r.?	-	-	Del	intronic	D	99198649	99198655	1	15	322.354	-	-	5	1	1	SNX7|CCDS755.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX7|CCDS755.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	2	4	3	6	22	28	22	28	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667999650	1	101362180	CCT	C	300	PASS	SLC30A7	CCDS776.1	r.323_324delCU	c.136_137delCT	p.S47fs*28	Del	frameshift	D	101362180	101362187	2	10	265.016	-	-	3	1	1	SLC30A7|CCDS776.1|r.323_324delCU|c.136_137delCT|p.S47fs*28|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SLC30A7|CCDS776.1|r.323_324delCU|c.136_137delCT|p.S47fs*28|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	6	5	26	29	26	29	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2667999729	1	101661977	TC	T	300	PASS	-	-	-	-	-	Del	-	D	101661977	101661983	1	6	268.628	-	-	5	1	1	-	-	./.	0	0	0	0	22	8	22	8	0	0	./.	5	0	7	2	52	29	52	29	7	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668001963	1	107975811	CT	C	540	PASS	NTNG1	CCDS44180.1	r.?	-	-	Del	intronic	D	107975811	107975814	1	30	483.531	-	-	2	1	1	NTNG1|CCDS44180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTNG1|CCDS44180.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	5	4	5	6	26	23	26	23	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668002157	1	108534833	GA	G	420	PASS	-	-	-	-	-	Del	-	D	108534833	108534841	1	20	376.08	-	-	7	1	1	-	-	./.	0	0	0	0	25	9	25	9	0	0	./.	4	3	5	6	33	17	33	17	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668002247	1	108756513	TTAAG	T	277	PASS	-	-	-	-	-	Del	-	D	108756513	108756523	4	15	322.354	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	4	4	5	29	21	29	21	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668002468	1	109406685	CA	C	660	PASS	-	-	-	-	-	Del	-	D	109406685	109406690	1	40	587.37	-	-	4	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	7	4	10	5	24	30	24	30	10	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668002809	1	110040860	C	CG	509	PASS	CYB561D1	CCDS44188.1	r.2796_2797insg	c.?	p.?	Ins	3'UTR variant	I	110040860	110040866	1	24	476.306	-	-	5	1	1	CYB561D1|CCDS44188.1|r.2796_2797insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CYB561D1|CCDS44188.1|r.2796_2797insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	8	11	8	11	0	0	./.	2	7	3	8	27	27	27	27	3	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668013015	1	153108757	CT	C	360	PASS	SPRR2B	CCDS30865.1	r.?	-	-	Del	intronic	D	153108757	153108760	1	16	322.354	-	-	2	1	1	SPRR2B|CCDS30865.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPRR2B|CCDS30865.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	3	3	3	4	21	23	21	23	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668014859	1	156953314	A	AC	1500	PASS	ARHGEF11	CCDS1163.1	r.?	-	-	Ins	intronic	I	156953314	156953318	1	180	1326.28	-	-	3	1	1	ARHGEF11|CCDS1163.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGEF11|CCDS1163.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	14	11	22	16	30	31	30	31	22	17	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668019415	1	168947235	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	168947235	168947240	2	8	374.876	-	-	4	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	0	7	2	7	21	40	21	40	2	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668020957	1	173253166	GA	G	1777	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173253166	173253172	1	247	1603.94	-	-	5	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	12	18	13	21	24	29	24	29	13	21	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668021994	1	175954481	T	TA	720	PASS	RFWD2	CCDS30944.1	r.?	-	-	Ins	intronic	I	175954481	175954490	1	49	637.483	-	-	8	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	6	6	9	7	31	32	31	32	9	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668024619	1	182686056	TAA	T	780	PASS	-	-	-	-	-	Del	-	D	182686056	182686059	2	56	697.23	-	-	2	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	6	7	7	8	27	29	27	29	7	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668024987	1	183376582	C	CT	300	PASS	NMNAT2	CCDS1353.1	r.?	-	-	Ins	intronic	I	183376582	183376592	1	10	265.618	-	-	9	1	1	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	12	18	0	0	./.	1	4	1	4	32	31	33	33	1	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668025840	1	185912086	GA	G	480	PASS	HMCN1	CCDS30956.1	r.?	-	-	Del	intronic	D	185912086	185912094	1	24	422.581	-	-	7	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	3	5	4	6	30	30	30	30	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668026345	1	187409587	CT	C	1320	PASS	-	-	-	-	-	Del	-	D	187409587	187409590	1	135	1180.76	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	8	14	8	16	24	31	24	31	8	16	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668029007	1	194391663	AG	A	360	PASS	-	-	-	-	-	Del	-	D	194391663	194391665	1	15	322.354	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	4	5	23	18	23	18	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668029591	1	196019070	CA	C	480	PASS	-	-	-	-	-	Del	-	D	196019070	196019075	1	21	429.805	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	2	8	3	25	18	25	18	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668029757	1	196572260	TCTA	T	363	PASS	KCNT2	CCDS1384.1	r.?	-	-	Del	intronic	D	196572260	196572264	3	24	418.366	-	-	1	1	1	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	4	10	38	58	38	58	4	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668036761	1	215855453	AT	A	480	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	215855453	215855455	1	24	429.805	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	5	3	5	15	24	15	24	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668036803	1	216014997	ACAT	A	1078	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216014997	216015003	3	98	1018.38	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	13	6	19	10	28	18	28	18	19	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668040255	1	227460625	CT	C	780	PASS	CDC42BPA	CCDS1558.1	r.?	-	-	Del	intronic	D	227460625	227460629	1	56	698.434	-	-	3	1	1	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	6	7	8	9	18	23	18	23	8	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668041921	1	233549339	AT	A	420	PASS	-	-	-	-	-	Del	-	D	233549339	233549349	1	18	374.274	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	2	7	4	24	23	24	23	7	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668042387	1	235056984	G	GAA	300	PASS	-	-	-	-	-	Ins	-	I	235056984	235056987	2	10	262.608	-	-	2	1	1	-	-	./.	0	0	0	0	11	11	12	11	0	0	./.	1	4	2	8	20	23	20	24	2	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668043150	1	236895695	TC	T	1289	PASS	ACTN2	CCDS1613.1	r.?	-	-	Del	intronic	D	236895695	236895700	1	95	1181.97	-	-	4	1	1	ACTN2|CCDS1613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACTN2|CCDS1613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	32	13	32	0	0	./.	4	18	12	27	14	29	14	29	12	27	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668044503	1	240742122	G	GA	300	PASS	GREM2	CCDS31070.1	r.?	-	-	Ins	intronic	I	240742122	240742131	1	12	265.618	-	-	8	1	1	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	10	22	10	0	0	./.	3	2	5	3	37	16	38	16	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668044794	1	241558280	G	GC	360	PASS	-	-	-	-	-	Ins	-	I	241558280	241558288	1	16	310.915	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	3	4	17	22	18	22	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668050086	10	6886794	GA	G	358	PASS	-	-	-	-	-	Del	-	D	6886794	6886797	1	20	377.973	-	-	2	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	4	3	5	4	20	16	20	16	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668053254	10	15620282	CT	C	540	PASS	ITGA8	CCDS31155.1	r.?	-	-	Del	intronic	D	15620282	15620287	1	28	485.966	-	-	4	1	1	ITGA8|CCDS31155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA8|CCDS31155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	6	3	8	5	13	7	13	7	8	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668055872	10	24690463	TAAC	T	569	PASS	KIAA1217	CCDS31165.1	r.?	-	-	Del	intronic	D	24690463	24690472	3	32	539.962	-	-	2	1	1	KIAA1217|CCDS31165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS31165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	7	3	9	3	21	10	21	10	9	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668060296	10	36809075	GA	G	300	PASS	NAMPTL	ENST00000440465	r.?	-	-	Del	downstream	D	36809075	36809077	1	12	269.981	-	-	1	1	1	NAMPTL|ENST00000440465|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NAMPTL|ENST00000440465|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	4	3	14	10	14	10	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668065183	10	54813647	GT	G	540	PASS	-	-	-	-	-	Del	-	D	54813647	54813654	1	28	485.966	-	-	6	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	3	6	4	7	16	9	16	9	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668065738	10	56459291	T	TG	600	PASS	PCDH15	CCDS44404.1	r.?	-	-	Ins	intronic	I	56459291	56459293	1	32	533.941	-	-	1	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	7	3	8	3	15	11	15	11	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668069413	10	67522826	AT	A	480	PASS	-	-	-	-	-	Del	-	D	67522826	67522835	1	25	419.928	-	-	8	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	4	4	5	4	11	12	11	12	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668072591	10	77114492	CA	C	300	PASS	-	-	-	-	-	Del	-	D	77114492	77114502	1	12	269.981	-	-	9	1	-	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	7	5	12	16	12	16	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668075115	10	86599534	AT	A	540	PASS	-	-	-	-	-	Del	-	D	86599534	86599544	1	24	484.761	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	7	3	7	15	18	15	18	3	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668075454	10	88043684	TG	T	569	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	88043684	88043686	1	35	536.951	-	-	1	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	5	17	5	0	0	./.	4	6	5	7	15	16	15	16	5	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668084856	10	120492831	AT	A	420	PASS	C10orf46	CCDS41570.1	r.?	-	-	Del	intronic	D	120492831	120492835	1	20	377.371	-	-	3	1	1	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	6	6	14	18	14	18	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668085735	10	123134267	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	123134267	123134275	1	10	266.971	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	9	3	15	15	15	17	9	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668087062	10	127426049	CA	C	329	PASS	C10orf137	CCDS7646.1	r.?	-	-	Del	intronic	D	127426049	127426051	1	16	323.977	-	-	1	1	1	C10orf137|CCDS7646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf137|CCDS7646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	3	3	3	3	9	12	9	12	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668088819	10	132830492	TCTGG	T	720	PASS	-	-	-	-	-	Del	-	D	132830492	132830501	4	33	647.954	-	-	2	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	10	2	12	4	23	18	23	18	12	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668089107	10	133864930	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	133864930	133864938	1	10	236.868	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	1	4	1	7	8	18	8	18	1	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668091903	11	8491915	GA	G	300	PASS	STK33	CCDS7789.1	r.?	-	-	Del	intronic	D	8491915	8491920	1	10	269.161	-	-	4	1	1	STK33|CCDS7789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK33|CCDS7789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	1	4	2	6	13	10	13	10	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668095557	11	22103301	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	22103301	22103302	1	18	374.296	-	-	0	1	1	-	-	./.	0	0	0	0	13	11	13	12	0	0	./.	5	2	6	2	21	11	21	13	6	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668098275	11	32190740	CG	C	900	PASS	-	-	-	-	-	Del	-	D	32190740	32190743	1	72	811.094	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	8	7	9	17	22	17	22	7	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668099254	11	35345857	CT	C	840	PASS	SLC1A2	CCDS31459.1	r.?	-	-	Del	intronic	D	35345857	35345859	1	63	756.419	-	-	1	1	1	SLC1A2|CCDS31459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC1A2|CCDS31459.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	8	7	10	23	13	23	13	7	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668100512	11	40115519	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	40115519	40115520	1	30	480.636	-	-	0	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	5	4	9	11	14	11	14	4	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668100945	11	41882297	T	TTA	629	PASS	-	-	-	-	-	Ins	-	I	41882297	41882309	2	42	581.557	-	-	5	1	1	-	-	./.	0	0	0	0	15	8	16	8	0	0	./.	6	5	10	8	15	14	15	15	10	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668105224	11	58233400	GC	G	300	PASS	-	-	-	-	-	Del	-	D	58233400	58233402	1	10	270.365	-	-	1	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	4	1	8	1	29	6	29	6	8	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668107400	11	63354911	ATAT	A	1227	PASS	PLA2G16	CCDS8047.1	r.?	-	-	Del	intronic	D	63354911	63354919	3	140	1179.97	-	-	2	1	1	PLA2G16|CCDS8047.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLA2G16|CCDS8047.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	9	13	12	17	38	50	38	50	12	17	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668107964	11	64275513	C	CT	1078	PASS	-	-	-	-	-	Ins	-	I	64275513	64275514	1	68	1011.73	-	-	0	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	16	7	18	17	30	17	30	7	18	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668108433	11	65193972	CAAAT	C	987	PASS	-	-	-	-	-	Del	-	D	65193972	65193980	4	91	973.313	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	12	6	14	6	52	46	52	46	14	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668108466	11	65238192	CAGG	C	269	PASS	-	-	-	-	-	Del	-	D	65238192	65238198	3	12	267.354	-	-	1	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	2	3	3	27	20	27	20	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668110716	11	69709589	AG	A	540	PASS	-	-	-	-	-	Del	-	D	69709589	69709591	1	30	486.656	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	4	6	7	33	22	33	22	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668111506	11	71657162	AG	A	360	PASS	RNF121	CCDS8203.1	r.?	-	-	Del	intronic	D	71657162	71657164	1	7	320.223	-	-	1	1	-	RNF121|CCDS8203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF121|CCDS8203.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	0	6	0	6	47	60	47	60	0	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668117502	11	89381106	TC	T	420	PASS	-	-	-	-	-	Del	-	D	89381106	89381110	1	20	378.511	-	-	3	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	4	4	5	14	16	14	16	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668119138	11	95549144	CT	C	360	PASS	CEP57	CCDS8304.1	r.?	-	-	Del	intronic	D	95549144	95549153	1	15	324.438	-	-	8	1	1	CEP57|CCDS8304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP57|CCDS8304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	3	5	35	33	35	33	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668119389	11	96059301	TGTCCT	TCTCG	387	PASS	MAML2	CCDS44714.1	r.?	-	-	Complex	intronic	DI	96059302	96059306	5	24	0	-	-	0	1	1	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	3	5	0	0	12	17	12	17	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668119420	11	96124250	AT	A	600	PASS	JRKL	CCDS8308.1	r.1094delU	c.438delT	p.N146fs*47	Del	frameshift	D	96124250	96124252	1	20	540.729	-	-	1	1	1	JRKL|CCDS8308.1|r.1094delU|c.438delT|p.N146fs*47|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	JRKL|CCDS8308.1|r.1094delU|c.438delT|p.N146fs*47|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	20	11	20	11	0	0	./.	1	9	3	9	26	35	26	35	3	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668119914	11	97855962	GA	G	480	PASS	-	-	-	-	-	Del	-	D	97855962	97855964	1	21	432.583	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	6	2	9	3	23	20	23	20	9	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668120777	11	99968701	GT	G	540	PASS	CNTN5	ENST00000279463	r.?	-	-	Del	intronic	D	99968701	99968711	1	28	486.656	-	-	9	1	1	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	6	3	6	8	11	8	11	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668121062	11	101000554	GCTTT	G	389	PASS	PGR	CCDS8310.1	r.?	-	-	Del	upstream	D	101000554	101000561	4	20	377.306	-	-	1	1	1	PGR|CCDS8310.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PGR|CCDS8310.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	9	16	9	0	0	./.	3	4	4	4	12	10	12	10	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668123301	11	109155232	TA	T	607	PASS	-	-	-	-	-	Del	-	D	109155232	109155242	1	40	594.802	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	7	4	7	10	13	10	13	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668125120	11	116762963	GA	G	1349	PASS	SIK3	CCDS8379.1	r.?	-	-	Del	intronic	D	116762963	116762969	1	154	1243.68	-	-	5	1	1	SIK3|CCDS8379.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIK3|CCDS8379.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	10	13	14	17	16	18	16	18	14	17	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668128749	11	130528072	G	GA	290	PASS	-	-	-	-	-	Ins	-	I	130528072	130528081	1	12	267.354	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	14	0	0	./.	3	2	4	5	16	8	16	8	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668129100	11	132449005	GA	G	360	PASS	ENSG00000183715	CCDS8492.1	r.?	-	-	Del	intronic	D	132449005	132449007	1	15	324.438	-	-	1	1	1	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	4	2	6	11	18	11	18	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668136268	12	20322789	A	AT	613	PASS	-	-	-	-	-	Ins	-	I	20322789	20322799	1	42	583.682	-	-	9	1	1	-	-	./.	0	0	0	0	21	20	22	20	0	0	./.	6	5	9	6	23	15	23	15	9	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668139005	12	28909671	GT	G	660	PASS	-	-	-	-	-	Del	-	D	28909671	28909676	1	36	594.519	-	-	4	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	8	4	11	15	20	15	20	4	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668141403	12	38833558	AT	A	360	PASS	-	-	-	-	-	Del	-	D	38833558	38833568	1	16	323.079	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	3	3	3	5	15	16	15	16	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668142024	12	41187187	CAG	C	454	PASS	-	-	-	-	-	Del	-	D	41187187	41187191	2	35	540.472	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	6	4	8	11	19	11	19	4	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668148422	12	62569703	T	TA	362	PASS	-	-	-	-	-	Ins	-	I	62569703	62569713	1	24	427.561	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	3	7	6	18	13	18	13	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668148665	12	63462515	G	GT	389	PASS	-	-	-	-	-	Ins	-	I	63462515	63462524	1	18	374.116	-	-	8	1	1	-	-	./.	0	0	0	0	20	9	20	10	0	0	./.	2	5	6	5	18	15	19	15	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668149612	12	66599405	GC	G	300	PASS	IRAK3	CCDS8975.1	r.?	-	-	Del	intronic	D	66599405	66599407	1	12	270.236	-	-	1	1	1	IRAK3|CCDS8975.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IRAK3|CCDS8975.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	5	2	19	7	19	7	5	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668149987	12	67556968	CA	C	1860	PASS	-	-	-	-	-	Del	-	D	67556968	67556970	1	272	1673.06	-	-	1	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	15	16	19	20	28	29	28	29	19	20	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668150472	12	69009574	TAC	T	540	PASS	RAP1B	CCDS8984.1	r.?	-	-	Del	intronic	D	69009574	69009586	2	28	486.425	-	-	5	1	-	RAP1B|CCDS8984.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAP1B|CCDS8984.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	6	3	17	5	40	19	40	19	17	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668151906	12	72519385	TG	T	749	PASS	-	-	-	-	-	Del	-	D	72519385	72519387	1	50	701.41	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	9	7	9	29	23	29	23	7	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668152749	12	75266976	TC	T	720	PASS	-	-	-	-	-	Del	-	D	75266976	75266978	1	45	648.567	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	8	7	13	24	31	24	31	7	13	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668152779	12	75385264	ACCAC	A	654	PASS	-	-	-	-	-	Del	-	D	75385264	75385269	4	64	754.855	-	-	1	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	7	7	16	9	28	15	28	15	16	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668153462	12	77131486	A	AG	600	PASS	-	-	-	-	-	Ins	-	I	77131486	77131487	1	32	532.043	-	-	0	1	-	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	7	4	9	19	40	19	41	4	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668155621	12	83371762	ATTT	A	569	PASS	TMTC2	CCDS9025.1	r.?	-	-	Del	intronic	D	83371762	83371770	3	27	540.472	-	-	7	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	8	5	8	26	28	26	28	5	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668156871	12	87097766	GTT	G	1320	PASS	-	-	-	-	-	Del	-	D	87097766	87097771	2	140	1189.04	-	-	4	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	13	9	17	12	24	18	24	18	17	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668157137	12	87824658	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	87824658	87824664	1	50	694.787	-	-	5	1	1	-	-	./.	0	0	0	0	15	19	15	20	0	0	./.	4	9	5	15	15	45	15	46	5	15	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668158404	12	91831966	T	TAG	420	PASS	-	-	-	-	-	Ins	-	I	91831966	91831970	2	18	369.902	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	5	4	7	26	33	26	33	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668163127	12	103560480	TTTTC	T	449	PASS	-	-	-	-	-	Del	-	D	103560480	103560491	4	25	431.776	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	4	5	6	32	24	32	24	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668168115	12	116719976	GAAGA	G	480	PASS	MED13L	CCDS9177.1	r.?	-	-	Del	upstream	D	116719976	116719987	4	24	432.378	-	-	2	1	1	MED13L|CCDS9177.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MED13L|CCDS9177.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	13	12	13	0	0	./.	5	3	7	7	37	33	37	33	7	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668169697	12	120085586	A	AC	269	PASS	-	-	-	-	-	Ins	-	I	120085586	120085594	1	6	267.226	-	-	7	1	1	-	-	./.	0	0	0	0	6	21	6	22	0	0	./.	0	5	3	4	17	22	17	22	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668171206	12	122644201	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	122644201	122644218	2	10	270.236	-	-	8	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	1	4	29	43	29	43	1	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668172602	12	125182490	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	125182490	125182496	2	6	270.236	-	-	2	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	6	1	25	14	25	14	6	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668172909	12	125740540	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	125740540	125740550	1	12	320.671	-	-	9	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	1	5	4	7	24	46	25	46	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668173516	12	127435120	AT	A	480	PASS	AC078878.2	ENST00000512624	r.?	-	-	Del	intronic	D	127435120	127435122	1	21	429.97	-	-	1	1	1	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	6	2	8	3	33	27	33	27	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668174002	12	128411421	GA	G	329	PASS	-	-	-	-	-	Del	-	D	128411421	128411424	1	15	324.283	-	-	2	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	2	4	3	4	8	30	8	30	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668174173	12	128772349	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	128772349	128772357	1	15	320.671	-	-	7	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	2	4	4	4	31	27	31	27	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668174426	12	129362946	TA	T	420	PASS	GLT1D1	CCDS9265.1	r.?	-	-	Del	intronic	D	129362946	129362949	1	18	378.331	-	-	2	1	1	GLT1D1|CCDS9265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLT1D1|CCDS9265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	17	24	17	0	0	./.	5	2	6	2	32	12	32	12	6	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668175434	12	131626483	CAG	C	540	PASS	GPR133	CCDS9272.1	r.?	-	-	Del	downstream	D	131626483	131626488	2	24	486.425	-	-	2	1	1	GPR133|CCDS9272.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	GPR133|CCDS9272.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	11	10	11	10	0	0	./.	7	2	10	3	36	18	36	18	10	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668181193	13	29087622	CTCTT	C	269	PASS	-	-	-	-	-	Del	-	D	29087622	29087636	4	12	270.256	-	-	3	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	4	4	24	22	24	22	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668182472	13	32305369	C	CG	480	PASS	-	-	-	-	-	Ins	-	I	32305369	32305376	1	24	426.147	-	-	6	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	5	4	8	20	20	20	20	4	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668188323	13	48818846	GGTTT	G	778	PASS	ITM2B	CCDS9409.1	r.?	-	-	Del	intronic	D	48818846	48818854	4	60	758.401	-	-	1	1	1	ITM2B|CCDS9409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITM2B|CCDS9409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	5	9	5	10	15	30	15	30	5	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668190396	13	55641577	CCTTTATT	C	348	PASS	-	-	-	-	-	Del	-	D	55641577	55641587	7	13	650.058	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	0	12	1	14	14	22	14	22	1	14	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668190797	13	56669100	TA	T	509	PASS	-	-	-	-	-	Del	-	D	56669100	56669104	1	30	486.942	-	-	3	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	5	4	6	7	16	23	16	23	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668194167	13	66272139	AAATAT	A	449	PASS	-	-	-	-	-	Del	-	D	66272139	66272151	5	24	433.372	-	-	2	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	5	3	7	6	21	6	21	3	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668194879	13	68735369	AT	A	360	PASS	-	-	-	-	-	Del	-	D	68735369	68735379	1	15	325.029	-	-	9	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	2	4	2	6	8	14	8	14	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668200081	13	83601056	AT	A	420	PASS	-	-	-	-	-	Del	-	D	83601056	83601061	1	18	379.201	-	-	4	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	2	5	3	7	12	22	12	22	3	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668201468	13	87781625	AC	A	360	PASS	-	-	-	-	-	Del	-	D	87781625	87781627	1	7	325.029	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	6	0	10	1	33	9	33	9	10	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668201494	13	87894806	TA	T	600	PASS	-	-	-	-	-	Del	-	D	87894806	87894810	1	32	541.715	-	-	3	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	7	3	9	20	31	20	31	3	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668202104	13	89829695	AC	A	720	PASS	-	-	-	-	-	Del	-	D	89829695	89829697	1	45	650.058	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	8	4	8	4	22	13	22	13	8	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668205908	13	100209791	G	GT	300	PASS	TM9SF2	CCDS9493.1	r.?	-	-	Ins	intronic	I	100209791	100209801	1	12	266.643	-	-	9	1	1	TM9SF2|CCDS9493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TM9SF2|CCDS9493.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	2	3	2	3	22	31	22	31	2	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668206609	13	101979923	GC	G	780	PASS	NALCN	CCDS9498.1	r.?	-	-	Del	intronic	D	101979923	101979926	1	56	704.23	-	-	2	1	1	NALCN|CCDS9498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NALCN|CCDS9498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	6	7	9	13	17	25	17	25	9	13	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668206654	13	102102071	TA	T	600	PASS	ITGBL1	CCDS9499.1	r.?	-	-	Del	upstream	D	102102071	102102074	1	32	541.715	-	-	2	1	1	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	7	3	9	6	20	20	20	20	9	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668211044	14	19119500	TA	T	296	PASS	-	-	-	-	-	Del	-	D	19119500	19119506	1	24	433.511	-	-	5	1	1	-	-	./.	0	0	0	0	29	29	29	29	0	0	./.	3	5	4	9	29	42	29	42	4	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668212518	14	22636199	C	CT	420	PASS	TRAC	ENST00000446346	r.?	-	-	Ins	intronic	I	22636199	22636201	1	18	375.108	-	-	1	1	1	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	9	0	0	./.	5	2	5	9	20	28	20	28	5	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668214819	14	30458560	CT	C	480	PASS	-	-	-	-	-	Del	-	D	30458560	30458565	1	24	431.705	-	-	4	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	5	3	7	6	16	18	16	18	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668218634	14	39132969	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	39132969	39132986	2	12	269.74	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	4	3	31	31	31	31	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668221036	14	47806444	TGTAA	T	658	PASS	MDGA2	CCDS41948.1	r.?	-	-	Del	intronic	D	47806444	47806452	4	40	650.266	-	-	1	1	1	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	9	3	12	5	36	27	36	27	12	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668221050	14	47843258	TC	T	600	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	47843258	47843260	1	36	541.889	-	-	1	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	5	5	7	6	26	36	26	36	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668221468	14	49690263	CA	C	540	PASS	-	-	-	-	-	Del	-	D	49690263	49690272	1	24	487.7	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	7	2	10	32	61	32	61	2	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668222588	14	51747537	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	51747537	51747546	1	18	375.108	-	-	8	1	-	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	2	7	3	26	21	26	21	7	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668222836	14	52581701	TTC	T	377	PASS	-	-	-	-	-	Del	-	D	52581701	52581715	2	8	372.097	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	9	13	0	0	./.	7	0	7	0	19	18	19	18	9	0	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668222970	14	53020521	AGG	A	449	PASS	TXNDC16	CCDS32083.1	r.?	-	-	Del	upstream	D	53020521	53020527	2	24	432.909	-	-	5	1	1	TXNDC16|CCDS32083.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	GPR137C|CCDS45106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	5	3	9	5	31	19	31	19	9	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668225046	14	58986392	GTGA	G	447	PASS	KIAA0586	CCDS45115.1	r.?	-	-	Del	intronic	D	58986392	58986397	3	28	487.7	-	-	1	1	1	KIAA0586|CCDS45115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0586|CCDS45115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	6	4	7	43	39	43	39	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668226133	14	61616812	C	CTTCTTTTCTTCCTTTCCCTCTCTTTCTTTTTCTTTCTTCT	360	PASS	-	-	-	-	-	Ins	-	I	61616812	61616827	40	15	180.639	-	-	0	1	1	-	-	./.	0	0	0	0	10	13	11	13	0	0	./.	2	4	0	0	48	43	48	45	2	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668227704	14	65703389	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	65703389	65703394	2	15	325.133	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	6	3	24	23	24	23	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668229159	14	71622802	T	TCTC	424	PASS	-	-	-	-	-	Ins	-	I	71622802	71622803	3	10	425.688	-	-	0	1	-	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	9	0	10	0	23	20	26	21	12	0	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668229581	14	72962338	G	GTC	720	PASS	RGS6	CCDS9808.1	r.?	-	-	Ins	intronic	I	72962338	72962345	2	48	635.817	-	-	3	1	1	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	7	5	10	5	26	23	26	23	10	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668233176	14	83359277	CA	C	660	PASS	-	-	-	-	-	Del	-	D	83359277	83359287	1	36	594.271	-	-	9	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	8	3	12	8	23	18	23	18	12	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668233298	14	83769249	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	83769249	83769250	1	7	317.909	-	-	0	1	-	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	0	6	2	11	14	27	15	28	2	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668233516	14	84547063	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	84547063	84547072	1	63	748.409	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	13	0	0	./.	6	8	8	13	14	22	15	23	8	13	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668234389	14	87599398	GACC	G	747	PASS	-	-	-	-	-	Del	-	D	87599398	87599403	3	55	758.644	-	-	1	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	10	4	15	7	18	9	18	9	15	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668234631	14	88554180	GCATA	G	358	PASS	-	-	-	-	-	Del	-	D	88554180	88554188	4	20	379.322	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	5	4	20	12	20	12	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668236428	14	93761192	C	CT	960	PASS	BTBD7	CCDS32146.1	r.499_500insa	c.173_174insA	p.R59fs*14	Ins	frameshift	I	93761192	93761201	1	65	855.583	-	-	8	1	1	BTBD7|CCDS32146.1|r.499_500insa|c.173_174insA|p.R59fs*14|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	BTBD7|CCDS32146.1|r.499_500insa|c.173_174insA|p.R59fs*14|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	17	6	17	6	0	0	./.	12	4	20	7	30	11	31	11	20	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668237599	14	98015524	TTATC	T	1676	PASS	-	-	-	-	-	Del	-	D	98015524	98015534	4	256	1625.67	-	-	2	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	15	15	17	19	20	24	20	24	17	19	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668237884	14	98901175	CA	C	300	PASS	-	-	-	-	-	Del	-	D	98901175	98901177	1	10	270.944	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	1	4	1	24	24	24	24	4	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668243727	15	26056464	CTT	C	540	PASS	ATP10A	CCDS32178.1	r.?	-	-	Del	intronic	D	26056464	26056469	2	24	488.117	-	-	4	1	1	ATP10A|CCDS32178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP10A|CCDS32178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	2	7	4	7	13	18	13	18	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668246297	15	33698963	GT	G	840	PASS	RYR3	CCDS45210.1	r.?	-	-	Del	intronic	D	33698963	33698972	1	63	759.294	-	-	8	1	1	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR3|CCDS45210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	8	6	9	9	26	24	26	24	9	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668249755	15	42788914	C	CA	360	PASS	SNAP23	CCDS10087.1	r.?	-	-	Ins	intronic	I	42788914	42788924	1	15	321.799	-	-	9	1	1	SNAP23|CCDS10087.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SNAP23|CCDS10087.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	4	4	17	27	18	27	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668250768	15	45676463	G	GT	660	PASS	AC025580.2	ENST00000458245	r.?	-	-	Ins	intronic	I	45676463	45676470	1	40	588.159	-	-	6	1	1	AC025580.2|ENST00000458245|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC025580.2|ENST00000458245|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	7	4	8	5	25	28	25	29	8	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668250910	15	46104985	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	46104985	46104995	1	12	267.564	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	14	11	0	0	./.	3	2	3	5	27	21	27	21	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668253521	15	53728491	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	53728491	53728494	1	60	910.561	-	-	2	1	1	-	-	./.	0	0	0	0	17	8	18	8	0	0	./.	14	3	14	4	23	12	23	12	14	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668254917	15	57615423	TG	T	720	PASS	-	-	-	-	-	Del	-	D	57615423	57615425	1	40	650.823	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	9	3	11	4	28	20	28	20	11	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668256807	15	62684066	T	TGCCC	327	PASS	-	-	-	-	-	Ins	-	I	62684066	62684072	4	14	360.381	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	6	1	7	1	24	18	24	18	7	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668257679	15	64727567	CAA	C	298	PASS	TRIP4	CCDS10194.1	r.?	-	-	Del	intronic	D	64727567	64727576	2	16	325.412	-	-	8	1	1	TRIP4|CCDS10194.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIP4|CCDS10194.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	3	2	4	19	14	20	14	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668259326	15	68410672	A	AT	300	PASS	PIAS1	CCDS45290.1	r.?	-	-	Ins	intronic	I	68410672	68410673	1	12	263.952	-	-	0	1	1	PIAS1|CCDS45290.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIAS1|CCDS45290.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	3	2	4	2	19	27	19	27	4	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668263435	15	80324977	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	80324977	80324982	2	12	266.36	-	-	2	1	-	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	2	3	4	9	14	21	14	21	4	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668264022	15	82232934	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	82232934	82232940	1	28	482.699	-	-	5	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	6	3	6	15	22	15	22	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668264336	15	83597382	GGTTA	G	836	PASS	HOMER2	CCDS45334.1	r.?	-	-	Del	intronic	D	83597382	83597390	4	81	867.764	-	-	1	1	1	HOMER2|CCDS45334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HOMER2|CCDS45334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	8	8	8	8	21	23	21	23	8	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668274990	16	8170000	TC	T	337	PASS	-	-	-	-	-	Del	-	D	8170000	8170002	1	12	325.182	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	3	10	27	50	27	50	3	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668275969	16	9924778	GT	G	749	PASS	GRIN2A	CCDS10539.1	r.?	-	-	Del	intronic	D	9924778	9924786	1	56	704.561	-	-	7	1	1	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	6	9	9	37	28	37	28	9	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668279611	16	17816765	TAA	T	540	PASS	-	-	-	-	-	Del	-	D	17816765	17816770	2	30	487.773	-	-	4	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	4	5	5	34	23	34	23	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668281003	16	21049610	GC	G	600	PASS	DNAH3	CCDS10594.1	r.?	-	-	Del	intronic	D	21049610	21049613	1	35	540.164	-	-	2	1	1	DNAH3|CCDS10594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH3|CCDS10594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	6	6	9	32	30	32	30	6	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668282578	16	24710045	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	24710045	24710053	1	15	321.57	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	6	6	30	28	30	28	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668283878	16	27618668	C	CT	420	PASS	KIAA0556	CCDS32415.1	r.?	-	-	Ins	intronic	I	27618668	27618670	1	18	375.165	-	-	1	1	1	KIAA0556|CCDS32415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0556|CCDS32415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	5	3	6	21	29	21	30	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668288959	16	48318345	GC	G	960	PASS	LONP2	CCDS10734.1	r.?	-	-	Del	intronic	D	48318345	48318348	1	65	867.152	-	-	2	1	1	LONP2|CCDS10734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LONP2|CCDS10734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	12	4	16	9	27	20	27	20	16	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668299144	16	83649047	GT	G	360	PASS	CDH13	ENST00000268613	r.?	-	-	Del	intronic	D	83649047	83649053	1	15	325.182	-	-	5	1	1	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH13|ENST00000268613|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	2	4	4	6	7	12	7	12	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668300774	16	89311219	CCTATT	C	385	PASS	-	-	-	-	-	Del	-	D	89311219	89311228	5	28	485.365	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	3	7	4	22	10	22	10	7	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668303762	17	6140360	AC	A	629	PASS	-	-	-	-	-	Del	-	D	6140360	6140363	1	42	594.812	-	-	2	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	6	5	10	6	26	24	26	24	10	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668305747	17	10944979	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	10944979	10944987	1	18	374.302	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	16	14	0	0	./.	2	5	6	5	28	27	28	27	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668311572	17	26913546	TTTTG	T	449	PASS	SPAG5	CCDS32594.1	r.?	-	-	Del	intronic	D	26913546	26913566	4	24	428.978	-	-	4	1	1	SPAG5|CCDS32594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG5|CCDS32594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	3	5	4	42	28	42	28	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668313344	17	30171392	A	AC	269	PASS	-	-	-	-	-	Ins	-	I	30171392	30171394	1	10	263.144	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	4	2	43	49	43	49	4	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668313371	17	30206690	C	CA	300	PASS	UTP6	CCDS11269.1	r.?	-	-	Ins	intronic	I	30206690	30206700	1	10	267.359	-	-	9	1	1	UTP6|CCDS11269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UTP6|CCDS11269.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	11	20	0	0	./.	1	4	1	4	39	54	41	55	1	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668315869	17	35810120	GGAA	G	418	PASS	TADA2A	CCDS11319.1	r.?	-	-	Del	intronic	D	35810120	35810131	3	21	432.59	-	-	3	1	1	TADA2A|CCDS11319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TADA2A|CCDS11319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	21	9	21	0	0	./.	2	6	2	9	29	57	29	57	2	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668317585	17	38555233	CAT	C	838	PASS	TOP2A	CCDS45672.1	r.?	-	-	Del	intronic	D	38555233	38555237	2	72	811.107	-	-	1	1	1	TOP2A|CCDS45672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOP2A|CCDS45672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	7	8	14	12	28	29	28	29	14	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668322542	17	46482452	T	TA	300	PASS	SKAP1	CCDS32674.1	r.?	-	-	Ins	intronic	I	46482452	46482461	1	12	267.359	-	-	8	1	1	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	3	2	3	4	26	43	26	43	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668323481	17	47971754	TG	T	2009	PASS	-	-	-	-	-	Del	-	D	47971754	47971758	1	324	1834.29	-	-	3	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	17	17	22	23	42	51	42	51	22	23	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668325018	17	51191360	GA	G	300	PASS	-	-	-	-	-	Del	-	D	51191360	51191368	1	10	270.369	-	-	7	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	4	1	36	27	36	27	4	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668326190	17	54352725	CT	C	660	PASS	ANKFN1	CCDS32686.1	r.?	-	-	Del	intronic	D	54352725	54352729	1	42	594.21	-	-	3	1	1	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	6	5	6	6	30	38	30	38	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668327057	17	56128855	ATCT	A	778	PASS	-	-	-	-	-	Del	-	D	56128855	56128862	3	63	757.033	-	-	2	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	8	6	8	6	28	19	28	19	8	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668328883	17	59429349	CTGTT	C	300	PASS	BCAS3	CCDS45749.1	r.?	-	-	Del	intronic	D	59429349	59429358	4	12	270.369	-	-	2	1	1	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	4	5	17	51	17	51	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668329321	17	60233004	TA	T	480	PASS	-	-	-	-	-	Del	-	D	60233004	60233008	1	21	432.59	-	-	3	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	6	5	10	17	21	17	21	5	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668331079	17	63623000	CT	C	569	PASS	-	-	-	-	-	Del	-	D	63623000	63623010	1	35	540.136	-	-	9	1	-	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	6	4	17	16	36	38	36	38	17	16	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668332302	17	65652046	C	CA	509	PASS	PITPNC1	ENST00000423236	r.?	-	-	Ins	intronic	I	65652046	65652054	1	30	477.633	-	-	7	1	1	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	7	7	7	0	0	./.	4	5	6	8	30	29	30	29	6	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668333665	17	68038763	AG	A	420	PASS	-	-	-	-	-	Del	-	D	68038763	68038765	1	20	378.517	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	3	6	5	42	32	42	32	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668343206	18	7416495	AT	A	360	PASS	-	-	-	-	-	Del	-	D	7416495	7416504	1	15	325.149	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	7	5	12	16	12	16	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668343270	18	7760037	TCTTA	T	418	PASS	PTPRM	CCDS11840.1	r.?	-	-	Del	intronic	D	7760037	7760045	4	24	427.512	-	-	1	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	3	5	6	12	14	12	14	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668343613	18	9165376	AGCTG	A	386	PASS	ANKRD12	CCDS42411.1	r.?	-	-	Del	intronic	D	9165376	9165381	4	14	378.739	-	-	1	1	1	ANKRD12|CCDS42411.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANKRD12|CCDS42411.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	1	6	1	8	4	14	4	14	1	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668346899	18	20482948	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	20482948	20482957	1	18	374.525	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	15	0	0	./.	5	2	6	3	29	31	30	31	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668349464	18	27462000	AC	A	660	PASS	-	-	-	-	-	Del	-	D	27462000	27462003	1	42	595.505	-	-	2	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	6	5	6	6	19	24	19	24	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668349465	18	27465172	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	27465172	27465181	1	24	428.716	-	-	8	1	1	-	-	./.	0	0	0	0	18	21	18	22	0	0	./.	5	3	8	7	35	24	35	24	8	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668349471	18	27494382	CCTCT	C	600	PASS	-	-	-	-	-	Del	-	D	27494382	27494389	4	35	541.916	-	-	3	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	4	8	4	21	18	21	18	8	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668349688	18	27996106	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	27996106	27996108	1	15	320.333	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	4	2	6	2	23	20	23	21	6	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668349862	18	28558626	TAGTA	T	300	PASS	-	-	-	-	-	Del	-	D	28558626	28558637	4	6	270.958	-	-	2	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	5	0	6	0	24	33	24	33	6	0	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668351040	18	32131685	TC	T	420	PASS	DTNA	CCDS45848.1	r.?	-	-	Del	intronic	D	32131685	32131687	1	18	379.341	-	-	1	1	1	DTNA|CCDS45848.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DTNA|CCDS45848.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	2	5	2	9	16	29	16	29	2	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668353735	18	40109762	GA	G	509	PASS	-	-	-	-	-	Del	-	D	40109762	40109771	1	30	487.724	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	4	6	6	35	31	35	31	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668357015	18	49345678	CCTT	C	540	PASS	-	-	-	-	-	Del	-	D	49345678	49345685	3	28	487.724	-	-	2	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	6	3	11	4	41	25	41	25	11	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668357059	18	49519427	AT	A	420	PASS	-	-	-	-	-	Del	-	D	49519427	49519434	1	14	379.341	-	-	6	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	6	1	6	1	34	22	34	22	6	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668365550	18	70239084	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	70239084	70239093	1	12	267.948	-	-	8	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	3	2	5	4	35	27	35	27	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668365727	18	70627238	TAAG	T	1138	PASS	-	-	-	-	-	Del	-	D	70627238	70627245	3	121	1080.22	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	10	10	10	12	29	39	29	39	10	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668380973	19	28726089	CA	C	360	PASS	-	-	-	-	-	Del	-	D	28726089	28726096	1	12	325.672	-	-	6	1	1	-	-	./.	0	0	0	0	13	18	14	18	0	0	./.	1	5	3	11	16	23	17	24	3	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668386374	19	41620507	GT	G	480	PASS	CYP2F1	CCDS12572.1	r.?	-	-	Del	intronic	D	41620507	41620511	1	25	434.229	-	-	3	1	1	CYP2F1|CCDS12572.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CYP2F1|CCDS12572.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	4	4	9	6	20	13	20	13	9	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668389435	19	48547973	GT	G	600	PASS	PLA2G4C	CCDS12710.1	r.?	-	-	Del	downstream	D	48547973	48547978	1	27	542.786	-	-	4	1	1	PLA2G4C|CCDS12710.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CABP5|CCDS12709.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	4	8	4	8	0	0	./.	2	8	3	10	17	20	17	20	3	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668395029	2	1422071	A	AG	263	PASS	TPO	CCDS1643.1	r.?	-	-	Ins	intronic	I	1422071	1422072	1	10	265.807	-	-	0	1	1	TPO|CCDS1643.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TPO|CCDS1643.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	1	4	2	33	31	33	31	4	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668395611	2	3786977	CA	C	300	PASS	ENSG00000214866	ENST00000423741	r.?	-	-	Del	intronic	D	3786977	3786979	1	6	265.807	-	-	1	1	1	ENSG00000214866|ENST00000423741|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000214866|ENST00000423741|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	3	8	3	0	0	./.	0	5	0	5	24	29	24	29	0	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668397041	2	8698199	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	8698199	8698208	2	20	374.539	-	-	4	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	4	4	6	27	25	27	25	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668398244	2	11601050	C	CAGAA	269	PASS	E2F6	CCDS1680.2	r.?	-	-	Ins	intronic	I	11601050	11601056	4	12	256.776	-	-	1	1	1	E2F6|CCDS1680.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	E2F6|CCDS1680.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	4	3	30	28	31	28	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668399971	2	17124188	CA	C	480	PASS	-	-	-	-	-	Del	-	D	17124188	17124193	1	24	430.108	-	-	4	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	3	6	5	28	15	28	15	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668401437	2	22092645	CA	C	480	PASS	-	-	-	-	-	Del	-	D	22092645	22092650	1	25	430.108	-	-	4	1	1	-	-	./.	0	0	0	0	11	26	11	26	0	0	./.	4	4	7	4	18	30	18	30	7	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668401602	2	22820475	GC	G	1200	PASS	-	-	-	-	-	Del	-	D	22820475	22820477	1	120	1074.67	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	9	11	16	19	36	32	36	32	16	19	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668401662	2	23089753	AAACTGAG	A	580	PASS	-	-	-	-	-	Del	-	D	23089753	23089763	7	117	1074.07	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	12	8	13	10	26	20	26	20	13	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668401664	2	23096841	CACA	C	269	PASS	-	-	-	-	-	Del	-	D	23096841	23096848	3	10	268.818	-	-	2	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	4	2	32	24	32	24	4	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668403788	2	28209485	GTCA	G	360	PASS	BRE	CCDS1764.1	r.?	-	-	Del	intronic	D	28209485	28209496	3	15	322.581	-	-	3	1	1	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRE|CCDS1764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	2	4	3	4	17	17	17	17	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668404981	2	31426336	TTC	T	660	PASS	CAPN14	CCDS46254.1	r.?	-	-	Del	intronic	D	31426336	31426342	2	40	591.399	-	-	2	1	1	CAPN14|CCDS46254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPN14|CCDS46254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	4	7	6	11	28	24	28	24	6	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668408885	2	41443849	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	41443849	41443865	2	12	268.818	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	3	3	25	28	25	28	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668411971	2	49840998	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	49840998	49841008	1	30	478.453	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	11	14	0	0	./.	5	4	5	5	30	22	31	22	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668412319	2	50918620	A	AT	929	PASS	NRXN1	CCDS46282.1	r.?	-	-	Ins	intronic	I	50918620	50918628	1	77	847.573	-	-	7	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	18	8	19	0	0	./.	10	6	13	10	41	35	41	35	13	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668416188	2	62976103	GT	G	420	PASS	EHBP1	CCDS1872.1	r.?	-	-	Del	intronic	D	62976103	62976108	1	25	430.108	-	-	4	1	1	EHBP1|CCDS1872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EHBP1|CCDS1872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	4	4	5	6	36	29	36	29	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668417878	2	68073785	GA	G	360	PASS	-	-	-	-	-	Del	-	D	68073785	68073795	1	16	322.581	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	4	3	16	20	16	20	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668422081	2	81587911	C	CT	478	PASS	-	-	-	-	-	Ins	-	I	81587911	81587920	1	84	903.143	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	11	6	14	10	34	23	34	23	14	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668427393	2	99339192	A	AAATTTTTGCTGAAGG	725	PASS	MGAT4A	CCDS2036.1	r.?	-	-	Ins	intronic	I	99339192	99339196	15	180	1118.32	-	-	0	1	1	MGAT4A|CCDS2036.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MGAT4A|CCDS2036.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	14	11	0	0	24	20	26	23	14	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668427793	2	100361866	AG	A	300	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100361866	100361868	1	12	268.818	-	-	1	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	5	3	22	19	22	19	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668427836	2	100575477	TGAG	T	745	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100575477	100575481	3	72	806.453	-	-	1	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	8	7	10	10	25	24	25	25	10	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668430422	2	109691447	ACT	A	1320	PASS	-	-	-	-	-	Del	-	D	109691447	109691451	2	108	1179.19	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	5	17	8	23	10	29	10	29	8	23	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668430966	2	112630109	GA	G	610	PASS	ANAPC1	CCDS2093.1	r.?	-	-	Del	intronic	D	112630109	112630114	1	49	645.162	-	-	4	1	1	ANAPC1|CCDS2093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANAPC1|CCDS2093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	6	6	7	6	19	23	19	23	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668431458	2	114103699	AG	A	456	PASS	-	-	-	-	-	Del	-	D	114103699	114103704	1	21	430.108	-	-	4	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	6	2	7	2	24	21	24	21	7	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668432190	2	116447248	CT	C	420	PASS	DPP10	CCDS46400.1	r.?	-	-	Del	intronic	D	116447248	116447255	1	18	376.345	-	-	6	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	5	3	6	20	14	20	14	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668432663	2	118090985	GT	G	300	PASS	-	-	-	-	-	Del	-	D	118090985	118090988	1	12	268.818	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	2	6	3	16	14	16	14	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668433738	2	121979480	T	TA	509	PASS	TFCP2L1	CCDS2134.1	r.3974_3975insu	c.?	p.?	Ins	3'UTR variant	I	121979480	121979483	1	28	477.851	-	-	2	1	1	TFCP2L1|CCDS2134.1|r.3974_3975insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TFCP2L1|CCDS2134.1|r.3974_3975insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	9	16	9	16	0	0	./.	6	3	10	6	22	14	22	14	10	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668433984	2	122928534	GA	G	420	PASS	-	-	-	-	-	Del	-	D	122928534	122928543	1	20	376.345	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	4	6	6	16	16	16	16	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668435783	2	129007576	ACAC	A	509	PASS	-	-	-	-	-	Del	-	D	129007576	129007580	3	28	483.872	-	-	1	1	-	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	6	3	7	6	16	24	16	24	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668438020	2	135847526	A	AG	300	PASS	RAB3GAP1	CCDS33294.1	r.?	-	-	Ins	intronic	I	135847526	135847530	1	10	259.185	-	-	3	1	1	RAB3GAP1|CCDS33294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB3GAP1|CCDS33294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	1	4	3	5	17	18	17	18	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668438460	2	137578467	GAGAA	G	720	PASS	THSD7B	ENST00000409968	r.?	-	-	Del	intronic	D	137578467	137578480	4	45	645.162	-	-	3	1	-	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	8	4	9	5	23	14	23	14	9	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668440869	2	145990014	CT	C	360	PASS	-	-	-	-	-	Del	-	D	145990014	145990019	1	7	321.979	-	-	4	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	6	3	8	14	26	14	26	3	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668441520	2	148858561	CAA	C	538	PASS	MBD5	CCDS33302.1	r.?	-	-	Del	intronic	D	148858561	148858565	2	35	532.819	-	-	3	1	1	MBD5|CCDS33302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MBD5|CCDS33302.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	6	4	7	5	23	19	23	19	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668441760	2	149804916	TA	T	600	PASS	KIF5C	ENST00000435030	r.?	-	-	Del	intronic	D	149804916	149804920	1	35	531.013	-	-	3	1	1	KIF5C|ENST00000435030|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF5C|ENST00000435030|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	4	6	5	6	26	28	26	28	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668441887	2	150420386	CTA	C	540	PASS	-	-	-	-	-	Del	-	D	150420386	150420390	2	30	483.872	-	-	1	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	4	6	5	16	19	16	19	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668444085	2	157656044	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	157656044	157656048	1	10	265.807	-	-	3	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	4	4	5	22	22	23	22	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668444981	2	160629454	CTT	C	900	PASS	MARCH7	CCDS2210.1	r.?	-	-	Del	downstream	D	160629454	160629460	2	66	805.249	-	-	5	1	1	MARCH7|CCDS2210.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CD302|CCDS33308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	28	16	28	0	0	./.	10	5	12	10	23	25	23	25	12	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668445673	2	163069180	CTTTG	C	1076	PASS	FAP	CCDS33311.1	r.?	-	-	Del	intronic	D	163069180	163069191	4	121	1075.27	-	-	2	1	1	FAP|CCDS33311.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAP|CCDS33311.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	10	10	11	11	16	16	16	16	11	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668445687	2	163209470	GA	G	1020	PASS	GCA	CCDS2218.1	r.?	-	-	Del	intronic	D	163209470	163209474	1	70	912.174	-	-	3	1	1	GCA|CCDS2218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GCA|CCDS2218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	13	4	18	4	30	16	30	16	18	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668445818	2	163989609	TTG	T	420	PASS	-	-	-	-	-	Del	-	D	163989609	163989615	2	20	376.345	-	-	2	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	3	7	6	24	27	24	27	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668448155	2	171812923	G	GT	300	PASS	GORASP2	CCDS33325.1	r.?	-	-	Ins	intronic	I	171812923	171812933	1	12	265.807	-	-	9	1	1	GORASP2|CCDS33325.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GORASP2|CCDS33325.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	12	23	12	0	0	./.	3	2	3	3	43	20	43	20	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668449192	2	174685133	AGTGGGGTT	A	261	PASS	-	-	-	-	-	Del	-	D	174685133	174685144	8	28	482.668	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	3	6	3	22	15	22	15	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668452201	2	185784868	AC	A	420	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Del	intronic	D	185784868	185784871	1	14	376.345	-	-	2	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	6	1	6	15	24	15	24	1	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668454428	2	193894682	GC	G	509	PASS	-	-	-	-	-	Del	-	D	193894682	193894685	1	18	483.27	-	-	2	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	1	8	2	11	12	27	12	27	2	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668455920	2	199087094	AG	A	1589	PASS	-	-	-	-	-	Del	-	D	199087094	199087097	1	204	1450.41	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	16	11	21	15	24	18	24	18	21	15	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668459559	2	210001351	AT	A	452	PASS	-	-	-	-	-	Del	-	D	210001351	210001355	1	40	645.162	-	-	3	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	9	2	11	16	27	17	27	3	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668461780	2	217601533	TTAAGA	T	973	PASS	-	-	-	-	-	Del	-	D	217601533	217601543	5	176	1343.49	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	10	15	13	16	15	19	15	19	13	16	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668466123	2	231718260	AAGG	A	360	PASS	-	-	-	-	-	Del	-	D	231718260	231718270	3	15	322.581	-	-	3	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	2	4	6	30	35	30	35	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668466126	2	231723322	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	231723322	231723331	1	21	425.292	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	6	2	6	3	20	27	20	27	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668466350	2	232357115	AT	A	260	PASS	-	-	-	-	-	Del	-	D	232357115	232357122	1	10	265.807	-	-	6	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	1	8	2	22	12	22	12	8	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668467290	2	234839167	AG	A	569	PASS	TRPM8	CCDS33407.1	r.?	-	-	Del	intronic	D	234839167	234839170	1	32	537.635	-	-	2	1	1	TRPM8|CCDS33407.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM8|CCDS33407.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	7	5	8	18	17	18	17	5	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668468036	2	237140959	CAT	C	360	PASS	ASB18	CCDS46548.1	r.?	-	-	Del	intronic	D	237140959	237140964	2	16	322.581	-	-	2	1	1	ASB18|CCDS46548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB18|CCDS46548.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	3	3	4	6	19	26	19	27	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668471502	20	4151890	TCTC	T	687	PASS	SMOX	CCDS13075.1	r.?	-	-	Del	intronic	D	4151890	4151896	3	54	705.791	-	-	1	1	1	SMOX|CCDS13075.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SMOX|CCDS13075.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	8	5	10	5	34	23	34	23	10	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668474147	20	11050474	CT	C	420	PASS	-	-	-	-	-	Del	-	D	11050474	11050481	1	18	380.041	-	-	6	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	2	5	7	7	28	32	28	32	7	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668474375	20	11690833	CCA	C	689	PASS	-	-	-	-	-	Del	-	D	11690833	11690842	2	48	651.5	-	-	4	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	7	5	8	8	25	30	25	30	8	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668475062	20	13463070	G	GT	660	PASS	TASP1	CCDS13116.1	r.?	-	-	Ins	intronic	I	13463070	13463077	1	42	589.983	-	-	6	1	1	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	5	6	6	10	19	29	20	29	6	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668478622	20	23525515	C	CTTCA	687	PASS	ENSG00000204662	ENST00000376987	r.?	-	-	Ins	downstream	I	23525515	23525521	4	54	674.484	-	-	1	1	1	ENSG00000204662|ENST00000376987|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000204662|ENST00000376987|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	6	9	6	0	0	./.	5	8	7	8	21	31	21	31	7	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668479102	20	24964086	G	GT	420	PASS	C20orf3	CCDS13166.1	r.?	-	-	Ins	intronic	I	24964086	24964093	1	18	372.215	-	-	6	1	1	C20orf3|CCDS13166.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C20orf3|CCDS13166.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	14	14	0	0	./.	2	5	4	5	31	33	31	34	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668482140	20	31504236	AT	A	480	PASS	EFCAB8	CCDS46588.1	r.?	-	-	Del	intronic	D	31504236	31504246	1	25	434.333	-	-	9	1	1	EFCAB8|CCDS46588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFCAB8|CCDS46588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	4	5	6	18	29	18	29	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668483839	20	35088880	C	CTATCATCTTCGCCAG	261	PASS	DLGAP4	CCDS13274.1	r.?	-	-	Ins	intronic	I	35088880	35088897	15	30	405.54	-	-	1	1	1	DLGAP4|CCDS13274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DLGAP4|CCDS13274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	4	5	2	2	31	28	33	31	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668485041	20	37892880	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	37892880	37892889	1	42	589.983	-	-	8	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	6	5	7	7	21	38	21	38	7	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668489134	20	48631263	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	48631263	48631280	2	12	269.05	-	-	8	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	3	26	45	26	45	2	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668496285	21	10023805	TA	T	570	PASS	-	-	-	-	-	Del	-	D	10023805	10023808	1	55	761.708	-	-	2	1	1	-	-	./.	0	0	0	0	99	72	99	72	0	0	./.	10	4	10	8	123	124	123	124	10	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668498879	21	15046517	ACTC	A	411	PASS	-	-	-	-	-	Del	-	D	15046517	15046524	3	48	652.892	-	-	2	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	7	5	7	6	25	24	25	24	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668499415	21	16417713	GT	G	540	PASS	NRIP1	CCDS13568.1	r.?	-	-	Del	intronic	D	16417713	16417716	1	30	489.669	-	-	2	1	1	NRIP1|CCDS13568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NRIP1|CCDS13568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	5	4	5	5	22	22	22	22	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668501478	21	22060207	GGAGA	G	269	PASS	-	-	-	-	-	Del	-	D	22060207	22060218	4	12	272.039	-	-	5	1	-	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	6	4	17	20	17	21	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668501503	21	22116514	GGTT	G	329	PASS	-	-	-	-	-	Del	-	D	22116514	22116521	3	7	326.446	-	-	2	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	0	6	0	6	21	34	21	34	0	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668502799	21	25166433	GA	G	600	PASS	-	-	-	-	-	Del	-	D	25166433	25166443	1	35	542.271	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	6	4	6	7	20	23	20	23	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668510112	21	43572382	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	43572382	43572384	1	30	484.251	-	-	1	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	5	4	6	4	26	20	26	20	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668510381	21	44335849	TG	T	389	PASS	-	-	-	-	-	Del	-	D	44335849	44335851	1	18	378.446	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	2	8	3	36	17	36	17	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668511738	21	47941097	GTTTTC	G	358	PASS	DIP2A	CCDS46655.1	r.?	-	-	Del	intronic	D	47941097	47941112	5	20	380.854	-	-	2	1	1	DIP2A|CCDS46655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIP2A|CCDS46655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	4	3	5	3	25	23	25	23	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668512910	22	18120675	CAA	C	540	PASS	BCL2L13	CCDS13746.1	r.?	-	-	Del	upstream	D	18120675	18120679	2	24	491.278	-	-	3	1	1	BCL2L13|CCDS13746.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	BCL2L13|ENST00000399782|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	7	2	8	3	28	24	28	24	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668515490	22	25629073	CT	C	300	PASS	CRYBB2	CCDS13831.1	r.?	-	-	Del	downstream	D	25629073	25629075	1	12	272.932	-	-	1	1	1	CRYBB2|CCDS13831.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CRYBB2|CCDS13831.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	5	4	26	17	26	17	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668519279	22	36385696	G	GA	300	PASS	RBM9	CCDS43013.1	r.?	-	-	Ins	intronic	I	36385696	36385704	1	12	269.922	-	-	7	1	1	RBM9|CCDS43013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM9|CCDS43013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	6	3	31	21	31	21	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668521876	22	43331105	T	TG	300	PASS	PACSIN2	CCDS43023.1	r.?	-	-	Ins	intronic	I	43331105	43331106	1	10	253.667	-	-	0	1	1	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	1	4	2	4	19	18	19	18	2	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668523534	22	48505036	CA	C	2160	PASS	-	-	-	-	-	Del	-	D	48505036	48505038	1	357	1956.68	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	20	16	28	20	34	27	34	27	28	20	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668524838	3	1111745	CT	C	300	PASS	-	-	-	-	-	Del	-	D	1111745	1111754	1	12	269.483	-	-	8	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	3	2	4	3	19	14	19	14	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668532554	3	23615486	T	TA	1260	PASS	UBE2E2	CCDS2637.1	r.?	-	-	Ins	intronic	I	23615486	23615496	1	132	1116.78	-	-	9	1	1	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	10	11	12	17	21	30	21	30	12	17	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668533490	3	26597295	GA	G	300	PASS	-	-	-	-	-	Del	-	D	26597295	26597304	1	12	269.483	-	-	8	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	3	2	5	3	21	17	21	17	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668533516	3	26689927	CT	C	420	PASS	LRRC3B	CCDS2644.1	r.?	-	-	Del	intronic	D	26689927	26689937	1	8	376.674	-	-	9	1	1	LRRC3B|CCDS2644.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRRC3B|CCDS2644.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	0	7	3	9	13	23	13	23	3	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668536497	3	36045227	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	36045227	36045232	2	15	323.379	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	2	5	3	16	22	16	22	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668537455	3	39942649	TTAC	T	538	PASS	MYRIP	CCDS2689.1	r.?	-	-	Del	intronic	D	39942649	39942655	3	32	533.547	-	-	1	1	1	MYRIP|CCDS2689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYRIP|CCDS2689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	7	3	8	3	29	17	29	17	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668543878	3	58762012	T	TA	629	PASS	C3orf67	CCDS33776.1	r.?	-	-	Ins	intronic	I	58762012	58762014	1	40	581.423	-	-	1	1	1	C3orf67|CCDS33776.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C3orf67|CCDS33776.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	4	7	5	7	15	27	16	27	5	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668548625	3	73197301	A	AT	780	PASS	AC103560.1	ENST00000509224	r.?	-	-	Ins	intronic	I	73197301	73197311	1	54	690.42	-	-	9	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	5	8	8	10	26	17	26	17	8	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668549744	3	75742580	TG	T	348	PASS	-	-	-	-	-	Del	-	D	75742580	75742582	1	35	538.966	-	-	1	1	1	-	-	./.	0	0	0	0	94	55	95	56	0	0	./.	4	6	9	10	140	124	141	126	9	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668550625	3	76331023	AC	A	480	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76331023	76331027	1	25	431.173	-	-	3	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	4	5	5	17	23	17	23	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668550841	3	76915370	CAAA	C	269	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76915370	76915377	3	12	269.483	-	-	6	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	3	2	5	2	19	16	19	16	5	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668551181	3	78005920	AT	A	540	PASS	-	-	-	-	-	Del	-	D	78005920	78005925	1	28	480.855	-	-	4	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	6	5	8	15	20	15	20	5	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668555822	3	97599043	CTCCT	C	389	PASS	CRYBG3	CCDS43113.1	r.?	-	-	Del	intronic	D	97599043	97599052	4	20	377.276	-	-	2	1	1	CRYBG3|CCDS43113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRYBG3|CCDS43113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	4	3	5	3	23	15	23	15	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668557933	3	104365276	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	104365276	104365283	1	28	479.651	-	-	6	1	1	-	-	./.	0	0	0	0	12	19	13	19	0	0	./.	6	3	8	4	17	10	17	10	8	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668560072	3	110203429	TA	T	420	PASS	-	-	-	-	-	Del	-	D	110203429	110203438	1	20	377.276	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	3	5	4	22	16	22	16	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668562387	3	117315586	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	117315586	117315592	1	12	266.473	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	2	3	2	4	14	19	14	19	2	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668565912	3	128367919	GAAAC	G	329	PASS	RPN1	CCDS3051.1	r.?	-	-	Del	intronic	D	128367919	128367932	4	15	323.379	-	-	3	1	1	RPN1|CCDS3051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPN1|CCDS3051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	3	4	15	16	15	16	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668566601	3	130657570	A	AGT	480	PASS	ATP2C1	CCDS46914.1	r.?	-	-	Ins	intronic	I	130657570	130657574	2	24	420.938	-	-	1	1	1	ATP2C1|CCDS46914.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP2C1|CCDS46914.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	12	14	0	0	./.	3	5	3	6	28	26	28	26	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668568329	3	136341381	TAA	T	416	PASS	STAG1	CCDS3090.1	r.?	-	-	Del	intronic	D	136341381	136341384	2	30	485.069	-	-	2	1	1	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	5	8	8	18	17	18	17	8	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668570989	3	144732078	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	144732078	144732086	1	35	532.945	-	-	7	1	1	-	-	./.	0	0	0	0	14	29	15	29	0	0	./.	6	4	8	5	26	14	26	14	8	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668571257	3	145440865	A	ATC	420	PASS	-	-	-	-	-	Ins	-	I	145440865	145440870	2	20	368.847	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	4	4	4	17	14	17	14	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668572782	3	150261924	GACTAATTGTTCAT	G	363	PASS	SERP1	CCDS3150.1	r.1782_1794delAUGAACAAUUAGU	c.?	p.?	Del	3'UTR variant	D	150261924	150261941	13	50	700.655	-	-	1	1	1	SERP1|CCDS3150.1|r.1782_1794delAUGAACAAUUAGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SERP1|CCDS3150.1|r.1782_1794delAUGAACAAUUAGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	8	12	8	0	0	./.	9	4	8	4	23	20	24	20	9	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668572825	3	150324772	TC	T	900	PASS	SERP1	CCDS3150.1	r.?	-	-	Del	upstream	D	150324772	150324775	1	66	808.449	-	-	2	1	1	SERP1|CCDS3150.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000198843|CCDS46936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	10	11	11	26	29	26	29	11	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668572918	3	150535821	TTCCTA	T	266	PASS	ENSG00000224010	ENST00000412550	r.?	-	-	Del	intronic	D	150535821	150535827	5	14	377.276	-	-	1	1	1	ENSG00000224010|ENST00000412550|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224010|ENST00000412550|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	6	1	8	1	21	18	21	18	8	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668573015	3	150924051	G	GT	300	PASS	MED12L	CCDS33876.1	r.?	-	-	Ins	intronic	I	150924051	150924061	1	12	266.473	-	-	9	1	1	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	2	3	19	15	19	16	2	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668575608	3	159188605	G	GAT	420	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Ins	intronic	I	159188605	159188621	2	20	368.847	-	-	7	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	16	17	0	0	./.	3	4	3	4	15	28	15	28	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668577451	3	164557457	GC	G	660	PASS	-	-	-	-	-	Del	-	D	164557457	164557459	1	42	592.862	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	6	5	9	7	30	25	30	25	9	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668577835	3	165815904	CT	C	360	PASS	-	-	-	-	-	Del	-	D	165815904	165815910	1	12	323.379	-	-	5	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	5	1	8	2	27	23	27	23	8	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668582740	3	181952370	ATGTTAT	A	261	PASS	-	-	-	-	-	Del	-	D	181952370	181952382	6	24	485.069	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	7	2	9	2	22	18	22	18	9	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668583510	3	184122336	GATT	G	476	PASS	EIF2B5	ENST00000444495	r.?	-	-	Del	intronic	D	184122336	184122340	3	36	538.966	-	-	1	1	1	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	5	5	7	6	17	31	17	31	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668585322	3	188871171	AGAG	A	404	PASS	TPRG1	CCDS3292.1	r.?	-	-	Del	intronic	D	188871171	188871175	3	21	431.173	-	-	1	1	1	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	6	4	9	16	27	16	27	4	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668585361	3	188964523	CTTGAGGAATAT	C	319	PASS	TPRG1	CCDS3292.1	r.?	-	-	Del	intronic	D	188964523	188964537	11	42	591.658	-	-	1	1	1	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	5	7	5	27	16	27	16	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668586063	3	190908658	G	GT	1014	PASS	-	-	-	-	-	Ins	-	I	190908658	190908659	1	90	906.007	-	-	0	1	1	-	-	./.	0	0	0	0	12	13	12	14	0	0	./.	8	9	11	11	18	23	18	23	11	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668587751	3	195619104	GGC	G	360	PASS	TNK2	CCDS33928.1	r.?	-	-	Del	intronic	D	195619104	195619107	2	15	323.379	-	-	1	1	1	TNK2|CCDS33928.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TNK2|CCDS33928.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	2	4	2	6	14	19	14	19	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668590681	4	4502500	CA	C	960	PASS	STX18	CCDS3377.1	r.?	-	-	Del	intronic	D	4502500	4502502	1	81	859.625	-	-	1	1	1	STX18|CCDS3377.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STX18|CCDS3377.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	8	8	11	10	34	26	34	26	11	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668593133	4	11833631	GTCA	G	360	PASS	-	-	-	-	-	Del	-	D	11833631	11833639	3	15	323.262	-	-	2	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	2	3	3	18	17	18	17	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668596263	4	21648585	T	TA	540	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Ins	intronic	I	21648585	21648594	1	24	475.261	-	-	8	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	7	2	9	3	21	16	21	16	9	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668600002	4	32711546	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	32711546	32711552	1	20	372.925	-	-	5	1	1	-	-	./.	0	0	0	0	18	13	18	14	0	0	./.	4	3	5	7	19	27	19	27	5	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668600211	4	33743090	TAA	T	300	PASS	-	-	-	-	-	Del	-	D	33743090	33743093	2	12	269.385	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	2	5	17	15	17	15	2	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668600336	4	34153465	AG	A	360	PASS	-	-	-	-	-	Del	-	D	34153465	34153468	1	16	323.262	-	-	2	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	3	3	3	4	15	18	15	18	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668601509	4	38131586	C	CAGTAAAATATTCATACCCTT	290	PASS	TBC1D1	CCDS33972.1	r.?	-	-	Ins	intronic	I	38131586	38131607	20	35	413.542	-	-	1	1	1	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D1|CCDS33972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	6	0	1	22	23	26	28	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668603281	4	41428444	T	TAA	629	PASS	LIMCH1	CCDS33977.1	r.?	-	-	Ins	intronic	I	41428444	41428447	2	42	579.402	-	-	2	1	1	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	6	5	8	7	22	23	22	23	8	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668604909	4	47406332	GTTAA	G	567	PASS	GABRB1	CCDS3474.1	r.?	-	-	Del	intronic	D	47406332	47406343	4	40	592.648	-	-	2	1	1	GABRB1|CCDS3474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABRB1|CCDS3474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	7	4	9	5	22	19	23	19	10	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668608937	4	59835362	GT	G	600	PASS	-	-	-	-	-	Del	-	D	59835362	59835370	1	35	538.771	-	-	7	1	1	-	-	./.	0	0	0	0	20	7	20	7	0	0	./.	6	4	6	4	20	24	20	24	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668609932	4	62345163	TC	T	540	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62345163	62345166	1	28	484.894	-	-	2	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	6	3	8	3	17	16	17	16	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668610653	4	64539819	CA	C	420	PASS	-	-	-	-	-	Del	-	D	64539819	64539822	1	18	377.139	-	-	2	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	5	3	6	17	18	17	18	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668610749	4	64819804	CTATT	C	319	PASS	-	-	-	-	-	Del	-	D	64819804	64819812	4	12	323.262	-	-	1	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	1	5	3	7	18	25	18	25	3	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668611669	4	67563967	G	GTA	300	PASS	-	-	-	-	-	Ins	-	I	67563967	67563969	2	10	263.365	-	-	0	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	1	4	3	5	17	19	17	19	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668611885	4	68227783	CAT	C	480	PASS	-	-	-	-	-	Del	-	D	68227783	68227788	2	24	431.017	-	-	2	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	3	5	4	5	20	16	20	16	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668612482	4	69912590	TG	T	720	PASS	UGT2B11	CCDS3527.1	r.?	-	-	Del	intronic	D	69912590	69912592	1	40	644.117	-	-	1	1	1	UGT2B11|CCDS3527.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	UGT2B11|CCDS3527.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	24	17	24	0	0	./.	3	9	3	12	18	27	18	27	3	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668613397	4	72190960	TA	T	360	PASS	SLC4A4	CCDS47071.1	r.?	-	-	Del	intronic	D	72190960	72190970	1	12	323.262	-	-	9	1	1	SLC4A4|CCDS47071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC4A4|CCDS47071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	1	5	2	6	22	22	22	22	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668614959	4	76961673	T	TC	420	PASS	CXCL11	CCDS3574.1	r.?	-	-	Ins	upstream	I	76961673	76961681	1	20	372.925	-	-	7	1	1	CXCL11|CCDS3574.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ART3|CCDS47080.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	4	3	5	5	19	22	19	22	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668616339	4	81852076	CT	C	298	PASS	C4orf22	CCDS3587.1	r.?	-	-	Del	intronic	D	81852076	81852086	1	7	322.66	-	-	9	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	0	6	1	8	16	25	16	25	1	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668619910	4	92912538	TTAGACTTAG	T	261	PASS	-	-	-	-	-	Del	-	D	92912538	92912551	9	30	484.894	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	5	4	5	14	21	14	22	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668622174	4	100794191	C	CGT	420	PASS	DAPP1	ENST00000296414	r.?	-	-	Ins	downstream	I	100794191	100794208	2	20	368.711	-	-	8	1	-	DAPP1|ENST00000296414|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DAPP1|ENST00000296414|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	15	18	15	0	0	./.	4	3	6	3	32	19	32	20	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668625166	4	111189817	AC	A	720	PASS	-	-	-	-	-	Del	-	D	111189817	111189819	1	45	642.912	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	8	5	11	19	25	19	25	5	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668632555	4	133237811	CTCTT	C	267	PASS	-	-	-	-	-	Del	-	D	133237811	133237817	4	12	323.262	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	5	1	5	3	29	22	30	22	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668634152	4	138383850	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	138383850	138383852	1	15	311.823	-	-	1	1	-	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	4	2	13	4	20	14	20	14	13	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668635615	4	142312604	TTTTCTCC	T	493	PASS	-	-	-	-	-	Del	-	D	142312604	142312615	7	84	915.91	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	6	11	6	13	18	22	18	22	6	13	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668642628	4	164562554	GA	G	300	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	164562554	164562562	1	12	269.385	-	-	7	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	5	2	19	15	19	15	5	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668645347	4	171980417	ATAGAG	A	387	PASS	-	-	-	-	-	Del	-	D	171980417	171980428	5	25	428.006	-	-	2	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	4	5	4	16	21	16	21	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668649196	4	182311485	TA	T	360	PASS	-	-	-	-	-	Del	-	D	182311485	182311492	1	15	323.262	-	-	6	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	4	4	6	16	18	16	18	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668651935	4	188673289	GGTACAGTCTGTTCCTTAGAGAGCCTACATAATACCTCTGCTGCATGAATTTCTTCTTACACTACAGTGCTCCAAGAACAATCATTCCAGGAGGTACAGGCAGAAACTAACAAGGCTTCTTAGGATTTAGCTTCAGAAGTCTCAGTACATAACTTGCCACATTACATTAGTCAAGCAAAAAGTAAGGCTAGGTGAGATTCAAGTGAATTTGGAAGGTTTTAAAAGGAGGAAGAGATTCCATTTCACATTTAAAAAAATGGCATGTGTCTTCAGCAAAGGAATATATAGCTGAAACACATCACAGGCACAAGGTACTTCAGTTTATACTCTAGCTCCACAATTTAATTTGGGTGATTATTTTTAATAGACTATTTTTTAGAGCAATTTTAGGTTCCAAGCAAAACTGAGTGGAAGGTACAGAGATATCTCAAATGGCTCCTACCCCTATGTAAGCATGGCTTCCCTCATTATTATCAACCCTCTCCAAAGTGGTACATTTGTTACAACTGATGAACTTATATTGACACATCATTGTCACCTGAAATCCATAGTTAACATTAGGTTTTACTTTTAGTGTTATACTCTCTATGGGTTTGACAAATGGATAATGACATGTATTCCACATAGTATCATACAGAGCACTTTCACTGCCCTCATAATCTTGGCACTTAGACTTTTC	G	261	PASS	-	-	-	-	-	Del	-	D	188673289	188673968	678	28	484.894	-	-	1	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	3	0	0	8	7	14	10	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668655025	5	2936413	CAA	C	660	PASS	-	-	-	-	-	Del	-	D	2936413	2936419	2	42	594.27	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	6	11	6	18	15	18	15	11	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668655362	5	3859076	T	TAA	389	PASS	-	-	-	-	-	Ins	-	I	3859076	3859081	2	18	367.334	-	-	4	1	1	-	-	./.	0	0	0	0	19	14	19	15	0	0	./.	5	2	6	5	23	19	23	20	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668656568	5	8266802	A	AT	305	PASS	-	-	-	-	-	Ins	-	I	8266802	8266812	1	12	320.535	-	-	9	1	1	-	-	./.	0	0	0	0	24	21	25	22	0	0	./.	5	1	6	2	23	14	23	14	6	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668658247	5	13876600	AT	A	600	PASS	DNAH5	CCDS3882.1	r.?	-	-	Del	intronic	D	13876600	13876609	1	36	540.245	-	-	8	1	1	DNAH5|CCDS3882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH5|CCDS3882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	5	10	5	24	11	24	11	10	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668658268	5	13928476	ACT	A	509	PASS	DNAH5	CCDS3882.1	r.?	-	-	Del	intronic	D	13928476	13928481	2	30	486.221	-	-	2	1	1	DNAH5|CCDS3882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH5|CCDS3882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	4	6	7	27	24	27	24	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668661044	5	22858914	TA	T	540	PASS	-	-	-	-	-	Del	-	D	22858914	22858924	1	30	486.221	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	4	6	4	26	14	26	14	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668662370	5	27402413	T	TA	757	PASS	-	-	-	-	-	Ins	-	I	27402413	27402423	1	56	693.288	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	7	6	10	7	20	18	21	18	10	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668663137	5	29723473	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	29723473	29723478	2	18	378.172	-	-	4	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	2	5	2	6	19	15	19	15	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668663563	5	31153994	G	GCT	300	PASS	-	-	-	-	-	Ins	-	I	31153994	31154012	2	12	264.102	-	-	8	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	2	4	5	15	24	15	24	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668666456	5	40430461	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	40430461	40430468	1	24	427.38	-	-	6	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	3	5	3	5	11	16	11	16	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668667808	5	50183230	GA	G	300	PASS	-	-	-	-	-	Del	-	D	50183230	50183240	1	10	270.123	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	4	2	12	11	12	11	4	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668668481	5	53341052	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	53341052	53341070	2	12	270.123	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	3	3	20	19	20	19	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668670137	5	59351634	ACT	A	509	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59351634	59351641	2	28	486.221	-	-	3	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	6	6	7	14	20	14	20	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668677417	5	92294138	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	92294138	92294140	1	24	480.802	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	7	2	8	4	13	19	14	20	8	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668678669	5	98795765	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	98795765	98795774	1	54	691.482	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	8	5	12	7	15	11	15	11	12	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668681971	5	113565373	CG	C	600	PASS	-	-	-	-	-	Del	-	D	113565373	113565375	1	32	539.041	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	7	3	12	4	24	17	24	17	12	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668683001	5	118003952	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	118003952	118003960	1	18	372.151	-	-	7	1	1	-	-	./.	0	0	0	0	19	24	19	25	0	0	./.	5	2	7	5	21	19	21	19	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668683336	5	119797798	AAC	A	509	PASS	PRR16	CCDS4127.1	r.?	-	-	Del	upstream	D	119797798	119797802	2	18	485.618	-	-	1	1	1	PRR16|CCDS4127.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PRR16|CCDS4127.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	13	18	13	0	0	./.	8	1	13	1	31	9	31	9	13	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668683896	5	122775607	AATGCATCG	A	261	PASS	-	-	-	-	-	Del	-	D	122775607	122775616	8	30	486.221	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	5	5	4	10	9	10	10	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668692811	5	161634620	CA	C	300	PASS	-	-	-	-	-	Del	-	D	161634620	161634624	1	10	270.123	-	-	3	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	4	3	17	14	17	14	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668693454	5	163997276	GA	G	360	PASS	AC008446.1	ENST00000486913	r.?	-	-	Del	intronic	D	163997276	163997279	1	16	324.147	-	-	2	1	1	AC008446.1|ENST00000486913|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC008446.1|ENST00000486913|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	3	4	5	7	11	7	11	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668693660	5	165060600	T	TTG	300	PASS	-	-	-	-	-	Ins	-	I	165060600	165060607	2	6	264.102	-	-	3	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	0	5	0	5	15	9	16	9	0	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668693693	5	165160389	AT	A	480	PASS	-	-	-	-	-	Del	-	D	165160389	165160399	1	24	432.196	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	3	6	7	13	15	13	15	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668693735	5	165409794	GC	G	420	PASS	-	-	-	-	-	Del	-	D	165409794	165409797	1	18	378.172	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	5	2	7	3	16	10	16	10	7	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668695691	5	173358848	G	GGTGC	269	PASS	CPEB4	CCDS4390.1	r.?	-	-	Ins	intronic	I	173358848	173358853	4	12	258.081	-	-	1	1	1	CPEB4|CCDS4390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CPEB4|CCDS4390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	9	17	0	0	./.	3	2	5	2	20	13	20	13	5	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668696351	5	175800923	GAA	G	360	PASS	ARL10	CCDS4400.1	r.2857_2858delAA	c.?	p.?	Del	3'UTR variant	D	175800923	175800930	2	16	324.147	-	-	6	1	1	ARL10|CCDS4400.1|r.2857_2858delAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ARL10|CCDS4400.1|r.2857_2858delAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	3	13	19	13	19	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668699514	6	3823769	AGTAATG	A	609	PASS	-	-	-	-	-	Del	-	D	3823769	3823778	6	130	1133.65	-	-	1	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	12	9	13	12	23	36	24	36	14	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668702506	6	10377052	CT	C	449	PASS	-	-	-	-	-	Del	-	D	10377052	10377054	1	25	425.846	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	4	7	6	20	25	20	25	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668703084	6	11623827	C	CT	760	PASS	-	-	-	-	-	Ins	-	I	11623827	11623837	1	72	798.913	-	-	9	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	7	8	12	12	37	40	37	40	12	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668704513	6	15084086	T	TA	329	PASS	-	-	-	-	-	Ins	-	I	15084086	15084096	1	16	320.288	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	3	3	26	41	26	41	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668705192	6	16520375	AT	A	300	PASS	ATXN1	CCDS34342.1	r.?	-	-	Del	intronic	D	16520375	16520378	1	12	269.917	-	-	2	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	5	27	17	27	17	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668706285	6	18495855	T	TA	689	PASS	-	-	-	-	-	Ins	-	I	18495855	18495857	1	48	638.769	-	-	1	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	5	7	6	9	21	31	22	31	6	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668706345	6	18630606	CA	C	300	PASS	AL136230.1	ENST00000510325	r.?	-	-	Del	intronic	D	18630606	18630610	1	12	268.712	-	-	3	1	1	AL136230.1|ENST00000510325|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL136230.1|ENST00000510325|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	4	3	23	27	23	27	4	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668712217	6	31403913	TC	T	480	PASS	-	-	-	-	-	Del	-	D	31403913	31403915	1	24	428.856	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	5	3	5	4	31	19	31	19	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668719957	6	49508825	CCTTTTCTTTATAACTA	C	261	PASS	-	-	-	-	-	Del	-	D	49508825	49508842	16	28	485.248	-	-	1	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	6	3	5	3	31	28	32	28	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668720285	6	50437062	GA	G	300	PASS	-	-	-	-	-	Del	-	D	50437062	50437071	1	6	269.917	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	0	5	2	6	20	29	20	29	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668722023	6	55487815	ACTT	A	449	PASS	-	-	-	-	-	Del	-	D	55487815	55487824	3	21	431.867	-	-	2	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	6	2	6	23	28	23	28	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668722188	6	56058893	CT	C	360	PASS	COL21A1	ENST00000244728	r.?	-	-	Del	intronic	D	56058893	56058895	1	15	323.298	-	-	1	1	1	COL21A1|ENST00000244728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	COL21A1|ENST00000244728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	2	4	4	4	21	32	21	32	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668724650	6	63132121	CAG	C	509	PASS	-	-	-	-	-	Del	-	D	63132121	63132126	2	30	485.85	-	-	2	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	8	5	20	9	20	9	8	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668725506	6	66490806	GTTCT	G	507	PASS	-	-	-	-	-	Del	-	D	66490806	66490816	4	35	539.833	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	6	5	6	23	18	23	18	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668729517	6	85165392	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	85165392	85165399	1	24	478.625	-	-	6	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	2	7	5	9	6	12	6	12	5	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668730534	6	90757834	GTCTT	G	269	PASS	BACH2	CCDS5026.1	r.?	-	-	Del	intronic	D	90757834	90757842	4	12	269.917	-	-	1	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	3	2	6	6	10	11	10	11	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668737009	6	124475869	GTTC	G	300	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124475869	124475878	3	12	268.712	-	-	2	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	2	3	7	6	7	6	2	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668737683	6	129421061	GC	G	480	PASS	LAMA2	CCDS5138.1	r.?	-	-	Del	intronic	D	129421061	129421064	1	24	431.867	-	-	2	1	1	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	23	9	23	0	0	./.	3	5	3	7	6	8	6	8	3	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668739322	6	136237013	G	GTAC	269	PASS	PDE7B	CCDS5175.1	r.?	-	-	Ins	intronic	I	136237013	136237018	3	10	260.886	-	-	1	1	1	PDE7B|CCDS5175.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE7B|CCDS5175.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	12	0	0	./.	4	1	5	1	15	13	15	13	5	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668744929	6	159439130	GTAAAAAACCCCTAGCTGT	G	319	PASS	-	-	-	-	-	Del	-	D	159439130	159439150	18	42	591.408	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	5	5	5	8	11	9	11	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668745596	6	161989496	GCGCCTGTAGTCCCAGCTGCTCAGGAGGCTGA	GCAC	290	PASS	PARK2	CCDS5281.1	r.?	-	-	Complex	intronic	DI	161989497	161989527	31	35	0	-	-	0	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	6	0	0	6	8	8	12	4	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668748758	7	2554210	ATCCATCCATTCATCCATCCATCTGTCCATCCATTCATCTGTCTATCCATCCATCCATTCATCCATGCATCCATCCATCCGTTAGTCTGTCTGTCCTTTCACCTATCCTTCCAGCCATCCATACATCCATCTATCCATCTGTCCATTCACCTGTCCATCCATCCATCCATTCATCCATCCATGCATCCATCTGTCCATTCATCCATGCATCCATCCATCCATTCATCTGTCGGTCTGTCTG	A	420	PASS	LFNG	ENST00000402506	r.?	-	-	Del	intronic	D	2554210	2554460	240	14	377.201	-	-	1	1	-	LFNG|ENST00000402506|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LFNG|ENST00000402506|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	1	6	0	0	58	43	58	43	1	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668749258	7	3538996	G	GT	449	PASS	SDK1	CCDS34590.1	r.?	-	-	Ins	intronic	I	3538996	3539005	1	24	423.862	-	-	8	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	5	3	6	6	33	24	33	24	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668751496	7	7527909	CCA	C	360	PASS	COL28A1	CCDS43553.1	r.?	-	-	Del	intronic	D	7527909	7527912	2	15	323.315	-	-	1	1	1	COL28A1|CCDS43553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL28A1|CCDS43553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	2	4	2	7	21	31	21	31	2	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668754299	7	14610536	GT	G	540	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14610536	14610541	1	28	484.973	-	-	4	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	6	5	8	29	28	29	28	5	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668754585	7	15446250	G	GTG	297	PASS	TMEM195	CCDS34604.1	r.?	-	-	Ins	intronic	I	15446244	15446252	2	9	418.443	-	-	3	1	-	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	9	0	0	./.	0	8	1	0	6	20	6	27	1	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668756015	7	19751420	G	GA	900	PASS	TWISTNB	CCDS34606.1	r.?	-	-	Ins	upstream	I	19751420	19751428	1	66	798.655	-	-	7	1	1	TWISTNB|CCDS34606.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TWISTNB|CCDS34606.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	9	12	9	0	0	./.	10	5	12	6	32	25	32	25	12	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668757171	7	22587615	C	CA	720	PASS	ENSG00000105889	ENST00000439708	r.?	-	-	Ins	intronic	I	22587615	22587622	1	48	638.803	-	-	6	1	1	ENSG00000105889|ENST00000439708|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000105889|ENST00000439708|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	7	5	8	7	33	23	33	23	8	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668759270	7	27979923	GT	G	329	PASS	JAZF1	CCDS5416.1	r.?	-	-	Del	intronic	D	27979923	27979925	1	7	316.692	-	-	1	1	1	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	6	0	5	0	20	23	20	23	7	0	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668759908	7	29662124	CAGA	C	329	PASS	-	-	-	-	-	Del	-	D	29662124	29662130	3	15	323.315	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	4	3	4	20	17	20	17	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668762208	7	35851785	ACT	A	449	PASS	SEPT7	ENST00000435235	r.?	-	-	Del	intronic	D	35851785	35851789	2	21	428.678	-	-	1	1	1	SEPT7|ENST00000435235|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEPT7|ENST00000435235|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	2	12	3	41	25	41	25	12	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668762483	7	36540578	TTCTC	T	360	PASS	-	-	-	-	-	Del	-	D	36540578	36540586	4	16	323.315	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	3	6	5	18	30	18	30	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668767419	7	49507961	AT	A	480	PASS	-	-	-	-	-	Del	-	D	49507961	49507968	1	21	430.485	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	6	2	10	4	30	17	30	17	10	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668768540	7	52566519	AG	A	600	PASS	-	-	-	-	-	Del	-	D	52566519	52566521	1	32	538.858	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	7	3	9	3	31	25	31	25	9	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668770331	7	56531088	GT	G	420	PASS	-	-	-	-	-	Del	-	D	56531088	56531096	1	18	377.201	-	-	7	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	2	8	3	24	33	24	33	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668775045	7	67626077	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	67626077	67626081	1	10	266.419	-	-	3	1	1	-	-	./.	0	0	0	0	12	28	12	29	0	0	./.	1	4	3	5	25	22	25	22	3	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668780357	7	78848590	C	CA	540	PASS	MAGI2	CCDS5594.1	r.?	-	-	Ins	intronic	I	78848590	78848597	1	30	476.544	-	-	6	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	5	4	5	6	27	34	27	34	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668780677	7	79762918	TCTCTG	T	476	PASS	GNAI1	CCDS5595.1	r.?	-	-	Del	upstream	D	79762918	79762926	5	35	537.052	-	-	1	1	1	GNAI1|CCDS5595.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	GNAI1|CCDS5595.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	11	7	11	0	0	./.	6	4	6	4	17	28	17	28	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668781289	7	81504000	GAATA	G	418	PASS	-	-	-	-	-	Del	-	D	81504000	81504007	4	21	430.485	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	6	2	6	18	21	18	21	2	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668782509	7	85055560	TA	T	300	PASS	-	-	-	-	-	Del	-	D	85055560	85055569	1	10	269.429	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	4	1	5	3	30	20	30	20	5	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668782643	7	85372338	GT	G	420	PASS	-	-	-	-	-	Del	-	D	85372338	85372344	1	20	377.201	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	4	5	5	37	36	37	36	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668782735	7	85606922	AT	A	360	PASS	-	-	-	-	-	Del	-	D	85606922	85606932	1	16	323.315	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	5	4	22	39	22	39	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668784389	7	90754993	G	GA	540	PASS	CDK14	CCDS5619.1	r.?	-	-	Ins	intronic	I	90754993	90755003	1	30	478.952	-	-	9	1	1	CDK14|CCDS5619.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	CDK14|CCDS5619.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	4	5	5	5	32	32	32	32	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668784735	7	91881507	TATTA	T	1498	PASS	ANKIB1	CCDS47639.1	r.?	-	-	Del	intronic	D	91881507	91881512	4	196	1401.03	-	-	1	1	1	ANKIB1|CCDS47639.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANKIB1|CCDS47639.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	13	13	15	13	27	30	27	30	15	13	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668785464	7	94331636	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	94331636	94331644	1	27	532.838	-	-	7	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	8	4	8	22	33	22	33	4	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668786962	7	98067579	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	98067579	98067588	1	35	531.634	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	6	5	7	27	34	27	34	5	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668788010	7	100225352	A	AC	360	PASS	TFR2	CCDS34707.1	r.?	-	-	Ins	intronic	I	100225352	100225360	1	12	317.896	-	-	7	1	1	TFR2|CCDS34707.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TFR2|CCDS34707.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	6	8	7	0	0	./.	1	5	3	6	20	26	20	26	3	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668790074	7	104656713	TC	T	780	PASS	MLL5	CCDS34723.1	r.?	-	-	Del	intronic	D	104656713	104656717	1	56	700.516	-	-	3	1	1	MLL5|CCDS34723.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MLL5|CCDS34723.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	6	7	8	9	30	31	30	31	8	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668794429	7	117784166	AGTT	A	567	PASS	-	-	-	-	-	Del	-	D	117784166	117784175	3	40	592.744	-	-	2	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	7	4	7	5	31	32	31	32	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668797240	7	125764327	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	125764327	125764331	2	15	323.315	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	2	4	20	21	20	21	2	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668797879	7	127809815	AAGG	A	420	PASS	-	-	-	-	-	Del	-	D	127809815	127809821	3	20	377.201	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	4	4	5	27	20	27	20	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668798656	7	129233405	ACACC	A	300	PASS	-	-	-	-	-	Del	-	D	129233405	129233411	4	12	268.827	-	-	1	1	-	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	3	2	7	5	23	33	23	33	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668801481	7	135650500	AAAC	A	300	PASS	LUZP6	CCDS5842.1	r.?	-	-	Del	intronic	D	135650500	135650509	3	12	269.429	-	-	2	1	1	LUZP6|CCDS5842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LUZP6|CCDS5842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	3	16	20	16	20	2	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668801689	7	136272198	GA	G	420	PASS	-	-	-	-	-	Del	-	D	136272198	136272207	1	20	377.201	-	-	8	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	4	3	6	5	30	25	30	25	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668803889	7	141170605	C	CAT	300	PASS	ENSG00000230744	ENST00000437284	r.?	-	-	Ins	downstream	I	141170605	141170619	2	12	262.807	-	-	6	1	-	ENSG00000230744|ENST00000437284|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	ENSG00000230744|ENST00000437284|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	4	7	27	34	28	34	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668805545	7	146376442	T	TC	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	146376442	146376443	1	6	254.98	-	-	0	1	-	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	5	0	8	2	21	23	21	23	8	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668805686	7	146758515	CTTTA	C	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146758515	146758525	4	10	269.429	-	-	2	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	30	9	30	0	0	./.	4	1	4	2	29	30	29	30	4	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668806961	7	149554026	CT	C	420	PASS	ZNF862	CCDS47741.1	r.?	-	-	Del	intronic	D	149554026	149554031	1	18	377.201	-	-	4	1	1	ZNF862|CCDS47741.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF862|CCDS47741.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	2	9	5	50	24	50	24	9	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668809366	7	154421107	CT	C	540	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154421107	154421116	1	28	484.973	-	-	8	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	6	3	7	3	36	39	36	39	7	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668811259	8	282760	AAGAC	A	389	PASS	AC136777.1	ENST00000507258	r.?	-	-	Del	intronic	D	282760	282772	4	18	372.557	-	-	2	1	1	AC136777.1|ENST00000507258|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC136777.1|ENST00000507258|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	2	6	2	14	13	14	13	6	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668811323	8	552075	TGGAGGCCTGGAGGGAAG	T	435	PASS	-	-	-	-	-	Del	-	D	552075	552098	17	72	805.647	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	8	6	8	10	9	11	9	7	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668812742	8	5630507	GA	G	300	PASS	-	-	-	-	-	Del	-	D	5630507	5630514	1	12	269.552	-	-	6	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	5	2	23	11	23	11	5	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668817885	8	23638554	C	CAG	838	PASS	-	-	-	-	-	Ins	-	I	23638554	23638571	2	66	790.595	-	-	8	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	10	5	10	5	24	10	25	10	10	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668818564	8	26203695	C	CA	480	PASS	PPP2R2A	CCDS34867.1	r.?	-	-	Ins	intronic	I	26203695	26203697	1	9	424.661	-	-	1	1	1	PPP2R2A|CCDS34867.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP2R2A|CCDS34867.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	8	0	9	1	16	7	16	7	9	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668821603	8	34803460	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	34803460	34803463	1	10	266.542	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	1	4	1	5	58	43	59	43	1	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668821739	8	35019299	A	AAAAC	298	PASS	-	-	-	-	-	Ins	-	I	35019299	35019303	4	7	297.574	-	-	0	1	-	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	0	6	0	13	61	39	63	39	0	13	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668822168	8	35943625	GCA	G	360	PASS	-	-	-	-	-	Del	-	D	35943625	35943641	2	16	323.463	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	4	4	76	64	76	64	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668822322	8	36307094	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	36307094	36307104	1	24	426.467	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	5	3	7	4	53	80	53	81	7	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668823687	8	38052380	TG	T	269	PASS	BAG4	CCDS6104.1	r.?	-	-	Del	intronic	D	38052380	38052382	1	6	268.95	-	-	1	1	-	BAG4|CCDS6104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAG4|CCDS6104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	5	0	25	0	228	185	228	185	25	0	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668823915	8	38210706	C	CA	1140	PASS	WHSC1L1	CCDS43729.1	r.?	-	-	Ins	intronic	I	38210706	38210714	1	104	1011.66	-	-	7	1	1	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	7	12	18	21	158	199	158	202	18	21	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668824192	8	38420537	T	TC	449	PASS	-	-	-	-	-	Ins	-	I	38420537	38420538	1	16	413.824	-	-	0	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	1	7	7	11	174	165	177	166	7	11	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668824932	8	39165329	AG	A	480	PASS	-	-	-	-	-	Del	-	D	39165329	39165331	1	9	408.405	-	-	1	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	8	0	23	0	136	139	136	139	23	0	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668825506	8	39922378	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	39922378	39922388	1	30	479.776	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	7	10	165	210	167	212	7	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668825509	8	39922541	A	AC	1080	PASS	-	-	-	-	-	Ins	-	I	39922541	39922543	1	99	954.133	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	8	10	16	13	163	203	164	204	16	14	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668826373	8	41038066	CTT	C	420	PASS	-	-	-	-	-	Del	-	D	41038066	41038075	2	20	376.771	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	6	4	112	107	112	107	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668826607	8	41334470	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	41334470	41334475	1	12	257.511	-	-	4	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	2	3	5	7	121	101	122	102	5	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668826940	8	41897260	G	GT	295	PASS	MYST3	CCDS6124.1	r.?	-	-	Ins	intronic	I	41897260	41897270	1	10	266.542	-	-	9	1	1	MYST3|CCDS6124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYST3|CCDS6124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	4	1	7	1	80	45	80	46	7	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668827713	8	43354450	CT	C	300	PASS	-	-	-	-	-	Del	-	D	43354450	43354460	1	12	269.552	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	4	4	31	26	31	26	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668827904	8	46940770	GA	G	420	PASS	-	-	-	-	-	Del	-	D	46940770	46940778	1	8	377.373	-	-	7	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	7	0	13	5	45	24	45	24	13	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668828740	8	49758529	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	49758529	49758533	1	20	373.159	-	-	3	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	4	5	5	35	35	36	36	5	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668831150	8	56442267	CA	C	540	PASS	-	-	-	-	-	Del	-	D	56442267	56442272	1	24	482.786	-	-	4	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	7	6	10	24	44	24	44	6	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668832214	8	59723424	AT	A	480	PASS	TOX	CCDS34897.1	r.?	-	-	Del	intronic	D	59723424	59723431	1	21	427.069	-	-	6	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	6	2	7	8	43	25	43	25	7	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668832338	8	60053655	GA	G	389	PASS	-	-	-	-	-	Del	-	D	60053655	60053665	1	14	377.373	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	13	0	0	./.	6	1	6	5	25	31	26	32	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668833029	8	62131506	AT	A	480	PASS	-	-	-	-	-	Del	-	D	62131506	62131508	1	25	430.08	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	4	6	7	26	29	26	29	6	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668833060	8	62301181	CT	C	780	PASS	CLVS1	CCDS6176.1	r.?	-	-	Del	intronic	D	62301181	62301188	1	54	700.836	-	-	6	1	1	CLVS1|CCDS6176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLVS1|CCDS6176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	8	5	16	12	37	32	37	32	16	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668833192	8	62673535	G	GT	360	PASS	AC091173.1	ENST00000505627	r.869_870insa	-	-	Ins	non-coding variant	I	62673535	62673545	1	12	312.626	-	-	9	1	1	AC091173.1|ENST00000505627|r.869_870insa|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	AC091173.1|ENST00000505627|r.869_870insa|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	./.	0	0	0	0	19	7	19	7	0	0	./.	5	1	5	1	40	47	41	47	5	1	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668833498	8	63581287	TATTA	T	300	PASS	NKAIN3	ENST00000328472	r.?	-	-	Del	intronic	D	63581287	63581298	4	12	269.552	-	-	2	1	1	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	2	3	3	3	20	43	20	43	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668835801	8	69589594	C	CT	300	PASS	C8orf34	CCDS6203.1	r.?	-	-	Ins	intronic	I	69589594	69589604	1	12	266.542	-	-	9	1	1	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf34|CCDS6203.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	2	42	31	43	31	3	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668837917	8	74856495	G	GA	360	PASS	TCEB1	CCDS34910.1	r.?	-	-	Ins	downstream	I	74856495	74856505	1	12	316.238	-	-	9	1	1	TCEB1|CCDS34910.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TCEB1|CCDS34910.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	16	12	16	0	0	./.	1	5	9	5	46	33	46	33	9	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668839289	8	78685062	AT	A	457	PASS	-	-	-	-	-	Del	-	D	78685062	78685072	1	24	431.284	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	5	6	6	38	28	38	28	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668839378	8	78883462	AT	A	540	PASS	-	-	-	-	-	Del	-	D	78883462	78883464	1	30	484.592	-	-	1	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	4	5	6	9	30	37	30	37	6	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668840558	8	81992961	GTAAATT	G	551	PASS	PAG1	CCDS6227.1	r.?	-	-	Del	intronic	D	81992961	81992972	6	90	1024.3	-	-	1	1	1	PAG1|CCDS6227.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAG1|CCDS6227.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	14	5	18	7	50	25	50	25	18	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668841657	8	85004592	AT	A	360	PASS	-	-	-	-	-	Del	-	D	85004592	85004600	1	15	323.463	-	-	7	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	2	7	5	31	44	31	44	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668841985	8	85941746	TGATGTACTCTACCAA	T	261	PASS	-	-	-	-	-	Del	-	D	85941746	85941764	15	28	479.776	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	6	3	6	3	35	23	35	23	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668843334	8	89695348	TAGAG	T	478	PASS	-	-	-	-	-	Del	-	D	89695348	89695354	4	30	485.194	-	-	2	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	4	5	5	6	26	24	26	24	5	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668843659	8	90556887	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	90556887	90556897	1	12	266.542	-	-	9	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	2	3	2	5	42	30	44	31	2	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668844287	8	92565131	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	92565131	92565136	1	16	319.85	-	-	4	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	3	3	7	3	41	35	42	35	7	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668847478	8	100327621	A	ATT	300	PASS	VPS13B	CCDS6280.1	r.?	-	-	Ins	intronic	I	100327621	100327629	2	10	263.532	-	-	7	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	1	4	4	7	44	36	44	36	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668847645	8	100903998	C	CTA	480	PASS	COX6C	CCDS6284.1	r.?	-	-	Ins	intronic	I	100903998	100904003	2	25	421.651	-	-	2	1	1	COX6C|CCDS6284.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COX6C|CCDS6284.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	4	4	5	37	30	37	31	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668848619	8	103191133	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	103191133	103191134	1	12	266.542	-	-	0	1	1	-	-	./.	0	0	0	0	13	13	14	13	0	0	./.	2	3	2	4	30	28	30	28	2	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668849854	8	106126418	GAA	G	840	PASS	-	-	-	-	-	Del	-	D	106126418	106126422	2	64	753.542	-	-	3	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	7	7	8	7	44	32	44	32	8	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668850157	8	106943809	AGAATTT	A	464	PASS	-	-	-	-	-	Del	-	D	106943809	106943816	6	77	862.567	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	10	6	9	7	31	31	32	31	10	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668850528	8	107824251	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	107824251	107824259	1	20	373.159	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	16	0	0	./.	4	3	7	6	35	40	35	40	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668853518	8	116463492	T	TAC	840	PASS	TRPS1	CCDS6318.2	r.?	-	-	Ins	intronic	I	116463492	116463500	2	63	733.674	-	-	3	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	8	6	8	9	32	36	32	37	8	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668853616	8	116646688	CTTAAAG	C	290	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116646688	116646699	6	20	539.105	-	-	1	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	1	9	1	9	23	32	23	32	1	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668853987	8	117589668	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	117589668	117589678	1	10	256.909	-	-	9	1	1	-	-	./.	0	0	0	0	14	20	16	20	0	0	./.	1	4	1	5	39	49	39	49	1	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668857754	8	126626252	ATG	A	329	PASS	-	-	-	-	-	Del	-	D	126626252	126626270	2	16	323.463	-	-	8	1	-	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	3	3	3	34	35	34	35	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668858848	8	129418054	T	TAAAA	900	PASS	-	-	-	-	-	Ins	-	I	129418054	129418057	4	66	770.125	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	10	6	12	20	41	20	41	6	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668861862	8	138015532	CAT	C	840	PASS	-	-	-	-	-	Del	-	D	138015532	138015547	2	64	754.144	-	-	7	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	7	15	14	39	24	39	24	15	14	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668862125	8	138632711	GA	G	480	PASS	-	-	-	-	-	Del	-	D	138632711	138632721	1	21	430.682	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	6	2	8	27	24	27	24	2	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668862857	8	140385692	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	140385692	140385697	1	16	318.044	-	-	4	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	3	4	37	28	37	28	3	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668862954	8	140581875	CAG	C	540	PASS	-	-	-	-	-	Del	-	D	140581875	140581880	2	24	482.786	-	-	2	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	2	7	6	8	31	35	31	35	6	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668866129	9	3833902	GT	G	420	PASS	GLIS3	CCDS6451.1	r.?	-	-	Del	intronic	D	3833902	3833911	1	18	379.005	-	-	8	1	1	GLIS3|CCDS6451.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLIS3|CCDS6451.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	2	5	4	7	13	22	13	22	4	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668873070	9	28890374	AT	A	360	PASS	MIR873	ENST00000401120	r.?	-	-	Del	upstream	D	28890374	28890376	1	15	324.861	-	-	1	1	1	MIR873|ENST00000401120|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR873|ENST00000401120|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	2	5	9	12	9	12	2	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668885364	9	89727939	TG	T	420	PASS	-	-	-	-	-	Del	-	D	89727939	89727941	1	18	379.005	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	2	6	2	12	10	12	10	6	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668887447	9	96819853	AAC	A	300	PASS	PTPDC1	CCDS6707.1	r.?	-	-	Del	intronic	D	96819853	96819868	2	12	266.503	-	-	7	1	1	PTPDC1|CCDS6707.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPDC1|CCDS6707.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	2	25	30	25	30	3	2	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668887953	9	98375512	GA	G	420	PASS	-	-	-	-	-	Del	-	D	98375512	98375522	1	20	379.005	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	3	7	5	23	17	23	17	7	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668889161	9	101886806	T	TG	300	PASS	TGFBR1	CCDS6738.1	r.?	-	-	Ins	intronic	I	101886806	101886815	1	12	267.707	-	-	8	1	1	TGFBR1|CCDS6738.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TGFBR1|CCDS6738.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	6	3	26	18	26	18	6	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668895369	9	119644678	CATAA	C	507	PASS	ASTN2	CCDS48009.1	r.?	-	-	Del	intronic	D	119644678	119644690	4	32	539.629	-	-	2	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	7	7	8	29	26	29	26	7	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668896999	9	124960434	GT	G	720	PASS	LHX6	CCDS6837.2	r.?	-	-	Del	downstream	D	124960434	124960437	1	49	648.518	-	-	2	1	1	LHX6|CCDS6837.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MORN5|CCDS6836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	6	6	8	10	18	17	18	17	8	10	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668897947	9	127853284	CT	C	1440	PASS	SCAI	CCDS48017.1	r.?	-	-	Del	intronic	D	127853284	127853286	1	133	1299.45	-	-	1	1	1	SCAI|CCDS48017.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCAI|CCDS48017.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	18	6	20	8	28	9	28	9	20	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668898326	9	128711008	T	TAC	360	PASS	PBX3	CCDS6865.1	r.?	-	-	Ins	intronic	I	128711008	128711010	2	7	317.637	-	-	0	1	-	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	0	6	0	1	22	23	22	23	0	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668899623	9	131815215	GA	G	480	PASS	FAM73B	CCDS6917.1	r.?	-	-	Del	intronic	D	131815215	131815217	1	21	425.924	-	-	1	1	1	FAM73B|CCDS6917.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM73B|CCDS6917.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	6	7	6	21	27	21	27	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668901678	9	136702326	A	AG	780	PASS	VAV2	CCDS48053.1	r.?	-	-	Ins	intronic	I	136702326	136702333	1	56	696.039	-	-	6	1	1	VAV2|CCDS48053.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VAV2|CCDS48053.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	7	6	7	8	22	25	22	25	7	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668903577	X	4399446	ACT	A	600	PASS	-	-	-	-	-	Del	-	D	4399446	4399451	2	35	542.106	-	-	2	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	6	4	6	6	8	15	8	15	6	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668903878	X	5540632	ACT	A	480	PASS	-	-	-	-	-	Del	-	D	5540632	5540637	2	24	433.685	-	-	2	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	5	3	8	3	16	11	16	11	8	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668905777	X	14845017	GTTTC	G	480	PASS	-	-	-	-	-	Del	-	D	14845017	14845025	4	24	433.083	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	5	4	4	13	15	13	15	4	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668906983	X	21373323	AG	A	457	PASS	-	-	-	-	-	Del	-	D	21373323	21373326	1	21	433.685	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	2	6	2	9	13	17	13	17	2	9	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668907578	X	24183660	AAGGTAGC	A	319	PASS	ZFX	CCDS14211.1	r.?	-	-	Del	intronic	D	24183660	24183672	7	40	596.316	-	-	1	1	1	ZFX|CCDS14211.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZFX|CCDS14211.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	26	0	0	./.	4	7	5	7	13	16	13	19	5	7	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668908716	X	31085295	CATATGTGGATATACACACATATACACACAT	C	298	PASS	FTHL17	CCDS14227.1	r.?	-	-	Del	downstream	D	31085295	31085328	30	16	325.263	-	-	1	1	-	FTHL17|CCDS14227.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FTHL17|CCDS14227.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	20	19	20	19	0	0	./.	3	3	0	0	37	25	37	25	3	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668910891	X	43922298	TAA	T	480	PASS	-	-	-	-	-	Del	-	D	43922298	43922301	2	25	433.685	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	4	7	6	16	15	16	15	7	6	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668912297	X	51037216	TAA	T	374	PASS	-	-	-	-	-	Del	-	D	51037216	51037220	2	20	379.474	-	-	3	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	3	6	4	11	10	11	10	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668912429	X	51882632	CT	C	480	PASS	-	-	-	-	-	Del	-	D	51882632	51882634	1	21	432.481	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	2	9	3	18	6	18	6	9	3	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668913384	X	57705301	TC	T	660	PASS	-	-	-	-	-	Del	-	D	57705301	57705304	1	36	594.51	-	-	2	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	8	3	12	8	15	8	15	8	12	8	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668914175	X	67557370	GT	G	509	PASS	OPHN1	CCDS14388.1	r.?	-	-	Del	intronic	D	67557370	67557379	1	28	474.65	-	-	8	1	1	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OPHN1|CCDS14388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	6	3	6	4	16	17	16	17	6	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668917662	X	87222309	CTTTG	C	540	PASS	-	-	-	-	-	Del	-	D	87222309	87222320	4	30	487.895	-	-	2	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	5	4	6	5	17	15	17	15	6	5	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668918906	X	94525424	CTTCTT	C	896	PASS	-	-	-	-	-	Del	-	D	94525424	94525432	5	88	917.365	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	7	10	7	12	9	15	9	15	7	12	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668918950	X	94980635	AG	A	300	PASS	-	-	-	-	-	Del	-	D	94980635	94980638	1	12	271.053	-	-	2	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	2	4	6	10	6	10	2	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668921693	X	112105518	CCTACTATGTGCTAGGGACAGTCACATATAATGTATTATTTAATAATCTCCCAAATACTATGCTATTTATTACCCATCCCATTTTTCTGATGAAGAAACTGAGTTTCAGAGAGGCTTGGTGACTTGCTTAAAGTCACAGGACTATTTAGTGACAGAGCTGGGATTTGAACCCAGCTCCT	C	261	PASS	-	-	-	-	-	Del	-	D	112105518	112105699	178	30	487.895	-	-	1	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	5	4	0	0	8	10	13	14	5	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668922256	X	114715761	GA	G	360	PASS	-	-	-	-	-	Del	-	D	114715761	114715771	1	15	325.263	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	4	4	12	13	12	13	4	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668924035	X	123083354	AC	A	389	PASS	-	-	-	-	-	Del	-	D	123083354	123083356	1	20	379.474	-	-	1	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	7	4	16	19	16	19	7	4	1	1	1	1	1	1	1	1
2579559	PD14469a	PD14469b	2668927220	X	140553872	CT	C	629	PASS	-	-	-	-	-	Del	-	D	140553872	140553876	1	40	596.316	-	-	3	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	7	4	11	4	17	12	17	12	11	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665809249	1	26708568	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	26708568	26708578	1	12	264.416	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	5	5	21	23	21	23	5	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665824376	1	73578911	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	73578911	73578920	1	30	478.116	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	5	7	8	17	21	17	21	7	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665836773	1	113549162	A	AGT	836	PASS	-	-	-	-	-	Ins	-	I	113549162	113549163	2	80	840.352	-	-	0	1	1	-	-	./.	0	0	0	0	4	8	4	9	0	0	./.	9	7	0	0	21	21	21	21	9	7	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665848859	1	160934672	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	160934672	160934682	1	12	317.54	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	1	5	1	6	27	56	27	56	1	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665850596	1	165100591	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	165100591	165100600	1	18	371.868	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	8	0	0	./.	2	5	6	7	30	37	30	38	6	7	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665872529	1	220414427	AT	A	600	PASS	RAB3GAP2	CCDS31028.1	r.?	-	-	Del	intronic	D	220414427	220414430	1	27	537.261	-	-	2	1	1	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3GAP2|CCDS31028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	8	2	11	5	34	28	34	28	11	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665876937	1	230969971	GAT	G	269	PASS	C1orf198	CCDS1587.1	r.?	-	-	Del	downstream	D	230969971	230969988	2	12	255.385	-	-	8	1	1	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	2	3	24	26	24	26	2	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665900385	10	37513278	A	AT	300	PASS	ANKRD30A	CCDS7193.1	r.?	-	-	Ins	intronic	I	37513278	37513287	1	12	265.524	-	-	8	1	1	ANKRD30A|CCDS7193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD30A|CCDS7193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	2	3	2	3	12	18	12	18	2	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665912934	10	74882328	ATTTAT	A	360	PASS	NUDT13	CCDS31220.1	r.?	-	-	Del	intronic	D	74882328	74882339	5	12	323.686	-	-	2	1	1	NUDT13|CCDS31220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUDT13|CCDS31220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	5	1	6	21	16	21	16	1	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665914605	10	79607424	GCA	G	300	PASS	DLG5	CCDS7353.2	r.?	-	-	Del	intronic	D	79607424	79607442	2	12	269.738	-	-	8	1	-	DLG5|CCDS7353.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG5|CCDS7353.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	2	3	2	3	17	20	17	20	2	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665937428	11	9833582	G	GT	300	PASS	SBF2	CCDS31427.1	r.?	-	-	Ins	intronic	I	9833582	9833592	1	12	264.256	-	-	9	1	1	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	2	3	32	25	32	25	2	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665943899	11	28592915	AAAT	A	540	PASS	-	-	-	-	-	Del	-	D	28592915	28592928	3	30	486.499	-	-	4	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	5	4	6	5	17	21	17	21	6	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665958809	11	76772773	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	76772773	76772775	1	12	257.032	-	-	1	1	-	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	3	3	18	28	18	28	3	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665990762	12	34582854	ATCT	A	480	PASS	-	-	-	-	-	Del	-	D	34582854	34582862	3	24	432.461	-	-	2	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	5	3	9	4	29	16	29	16	9	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2665999309	12	63314268	T	TG	360	PASS	PPM1H	CCDS44934.1	r.?	-	-	Ins	intronic	I	63314268	63314269	1	16	319.529	-	-	0	1	1	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	3	3	3	16	32	16	32	3	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666005447	12	83211092	G	GT	420	PASS	TMTC2	CCDS9025.1	r.?	-	-	Ins	intronic	I	83211092	83211100	1	20	372.985	-	-	7	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	3	4	3	5	21	26	22	26	3	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666007984	12	92464477	TA	T	600	PASS	-	-	-	-	-	Del	-	D	92464477	92464480	1	36	540.576	-	-	2	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	5	5	5	6	19	17	19	17	5	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666014992	12	112243596	AGGTG	A	509	PASS	ALDH2	CCDS9155.1	r.?	-	-	Del	intronic	D	112243596	112243606	4	28	486.519	-	-	2	1	1	ALDH2|CCDS9155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALDH2|CCDS9155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	6	3	8	4	27	17	27	17	8	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666019480	12	123407656	AT	A	300	PASS	-	-	-	-	-	Del	-	D	123407656	123407665	1	10	270.288	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	1	4	3	5	18	19	18	19	3	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666057103	13	113115752	GT	G	300	PASS	-	-	-	-	-	Del	-	D	113115752	113115754	1	12	270.924	-	-	1	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	3	2	4	5	24	18	24	18	4	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666068439	14	50520342	G	GAA	420	PASS	-	-	-	-	-	Ins	-	I	50520342	50520344	2	20	371.22	-	-	1	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	3	5	37	23	37	23	3	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666084934	14	98058166	CT	C	420	PASS	-	-	-	-	-	Del	-	D	98058166	98058176	1	20	379.649	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	4	3	4	10	16	10	16	3	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666089281	15	21166526	A	AT	365	PASS	-	-	-	-	-	Ins	-	I	21166526	21166533	1	12	590.145	-	-	6	1	1	-	-	./.	0	0	0	0	18	26	18	26	0	0	./.	0	11	0	13	25	57	25	57	0	13	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666096799	15	42770289	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	42770289	42770299	1	12	268.248	-	-	9	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	3	2	2	2	17	36	18	36	3	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666101002	15	54902307	G	GT	420	PASS	UNC13C	CCDS45264.1	r.?	-	-	Ins	intronic	I	54902307	54902317	1	20	375.547	-	-	9	1	1	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNC13C|CCDS45264.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	3	4	4	4	23	25	23	25	4	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666102916	15	59824715	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	59824715	59824724	1	12	268.248	-	-	8	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	3	4	34	15	34	15	3	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666105654	15	66679107	TA	T	300	PASS	MAP2K1	CCDS10216.1	r.?	-	-	Del	upstream	D	66679107	66679109	1	12	270.656	-	-	1	1	1	MAP2K1|CCDS10216.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MAP2K1|CCDS10216.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	4	3	17	21	17	21	4	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666112219	15	86438810	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	86438810	86438820	1	15	320.693	-	-	9	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	2	4	2	25	21	25	21	4	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666129695	16	26409235	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	26409235	26409244	1	30	481.814	-	-	8	1	-	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	4	7	4	40	33	41	33	7	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666132312	16	32389455	G	GT	332	PASS	-	-	-	-	-	Ins	-	I	32389455	32389465	1	16	427.61	-	-	9	1	1	-	-	./.	0	0	0	0	25	34	25	34	0	0	./.	1	7	1	8	51	75	52	75	1	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666141655	16	71094016	G	GT	300	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Ins	intronic	I	71094016	71094024	1	10	268.009	-	-	7	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	27	19	28	0	0	./.	4	1	8	6	64	34	64	34	8	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666167985	17	51225808	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	51225808	51225818	1	12	268.028	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	6	2	28	23	28	23	6	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666170607	17	58957145	TA	T	637	PASS	BCAS3	CCDS45749.1	r.?	-	-	Del	intronic	D	58957145	58957148	1	30	595.683	-	-	2	1	1	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	9	2	14	2	30	16	30	16	14	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666182141	18	6105859	A	AT	720	PASS	L3MBTL4	CCDS11839.2	r.?	-	-	Ins	intronic	I	6105859	6105864	1	33	639.754	-	-	4	1	1	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	L3MBTL4|CCDS11839.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	10	2	12	3	36	30	37	30	12	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666215236	19	20306698	AT	A	300	PASS	ZNF90	CCDS46029.1	r.?	-	-	Del	intronic	D	20306698	20306708	1	12	270.139	-	-	9	1	1	ZNF90|CCDS46029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF90|CCDS46029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	4	2	19	18	19	18	4	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666222566	19	40053034	TTTTGA	T	269	PASS	-	-	-	-	-	Del	-	D	40053034	40053043	5	12	271.343	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	5	4	7	14	7	14	5	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666231066	19	57689664	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	57689664	57689673	1	10	263.516	-	-	8	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	1	4	5	6	17	17	18	17	5	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666256066	2	73804596	G	GT	300	PASS	ALMS1	CCDS42697.1	r.?	-	-	Ins	intronic	I	73804596	73804606	1	12	266.061	-	-	9	1	1	ALMS1|CCDS42697.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALMS1|CCDS42697.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	2	3	3	3	25	20	26	20	3	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666261444	2	91854211	AC	A	379	PASS	-	-	-	-	-	Del	-	D	91854211	91854217	1	12	591.956	-	-	5	1	1	-	-	./.	0	0	0	0	36	16	36	16	0	0	./.	11	0	13	0	64	41	64	41	13	0	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666292011	2	192959223	AGT	A	300	PASS	TMEFF2	CCDS2314.1	r.?	-	-	Del	intronic	D	192959223	192959240	2	12	269.071	-	-	8	1	-	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	2	4	22	23	22	23	2	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666295213	2	202855275	TA	T	360	PASS	-	-	-	-	-	Del	-	D	202855275	202855284	1	15	322.885	-	-	8	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	4	6	5	26	19	26	19	6	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666316666	20	23725927	G	GT	300	PASS	CST1	CCDS13160.1	r.?	-	-	Ins	downstream	I	23725927	23725935	1	10	267.695	-	-	7	1	1	CST1|CCDS13160.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CST1|CCDS13160.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	8	15	8	0	0	./.	4	1	5	2	28	16	28	16	5	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666320561	20	33925834	T	TA	360	PASS	UQCC	CCDS13252.1	r.?	-	-	Ins	intronic	I	33925834	33925843	1	12	320.27	-	-	8	1	1	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	1	5	2	5	23	26	23	26	2	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666328254	20	55325238	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	55325238	55325248	1	12	266.491	-	-	9	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	2	3	2	3	31	25	31	25	2	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666330294	20	62181559	G	GC	418	PASS	C20orf195	CCDS13526.1	r.?	-	-	Ins	upstream	I	62181559	62181568	1	24	430.238	-	-	8	1	1	C20orf195|CCDS13526.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C20orf195|CCDS13526.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	4	10	4	0	0	./.	3	5	5	7	13	21	13	22	5	7	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666332470	21	10618773	T	TGGTGTATATACACACATATGCATATA	353	PASS	-	-	-	-	-	Ins	-	I	10618773	10618774	26	15	232.695	-	-	0	1	-	-	-	./.	0	0	0	0	14	23	14	25	0	0	./.	4	2	0	0	28	60	29	63	4	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666337807	21	23994017	AT	A	600	PASS	-	-	-	-	-	Del	-	D	23994017	23994021	1	35	544.361	-	-	3	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	6	4	9	4	27	16	27	16	9	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666339740	21	28856520	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	28856520	28856528	1	25	430.672	-	-	7	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	4	4	5	5	26	17	27	18	5	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666340777	21	31819892	G	GGA	300	PASS	-	-	-	-	-	Ins	-	I	31819892	31819909	2	10	264.354	-	-	8	1	-	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	7	2	23	16	23	16	7	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666357803	22	48558664	CAACT	C	298	PASS	-	-	-	-	-	Del	-	D	48558664	48558673	4	7	326.912	-	-	2	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	0	6	0	5	5	18	5	19	0	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666366952	3	25361489	CT	C	360	PASS	RARB	ENST00000404969	r.?	-	-	Del	intronic	D	25361489	25361491	1	12	318.056	-	-	1	1	1	RARB|ENST00000404969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARB|ENST00000404969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	1	5	4	7	19	26	19	26	4	7	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666380545	3	68063853	T	TA	360	PASS	FAM19A1	ENST00000478136	r.?	-	-	Ins	intronic	I	68063853	68063860	1	15	319.862	-	-	6	1	1	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	4	4	15	16	15	16	4	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666385128	3	79696980	G	GA	449	PASS	ROBO1	ENST00000464233	r.?	-	-	Ins	intronic	I	79696980	79696989	1	24	425.279	-	-	8	1	1	ROBO1|ENST00000464233|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ROBO1|ENST00000464233|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	3	5	5	5	17	14	17	14	5	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666391948	3	105891250	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	105891250	105891270	2	12	269.562	-	-	9	1	-	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	2	3	2	18	21	18	21	3	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666409487	3	160945174	A	AT	600	PASS	NMD3	CCDS3194.1	r.?	-	-	Ins	intronic	I	160945174	160945177	1	32	530.094	-	-	2	1	1	NMD3|CCDS3194.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NMD3|CCDS3194.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	7	3	7	4	24	23	24	23	7	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666427556	4	16643662	G	GA	300	PASS	LDB2	CCDS3420.1	r.?	-	-	Ins	intronic	I	16643662	16643670	1	12	266.427	-	-	7	1	1	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	3	2	26	26	28	27	3	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666437037	4	44180492	G	GT	420	PASS	KCTD8	CCDS3467.1	r.?	-	-	Ins	intronic	I	44180492	44180501	1	14	372.998	-	-	8	1	1	KCTD8|CCDS3467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCTD8|CCDS3467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	6	1	7	4	22	17	22	17	7	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666438459	4	49016827	AC	A	600	PASS	CWH43	CCDS3486.1	r.?	-	-	Del	intronic	D	49016827	49016834	1	36	534.661	-	-	6	1	1	CWH43|CCDS3486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CWH43|CCDS3486.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	5	6	6	19	20	19	20	6	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666443010	4	63058721	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	63058721	63058729	1	12	266.427	-	-	7	1	1	-	-	./.	0	0	0	0	19	18	20	18	0	0	./.	2	3	3	4	20	20	20	20	3	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666447615	4	76626191	A	AT	327	PASS	G3BP2	ENST00000511868	r.?	-	-	Ins	intronic	I	76626191	76626199	1	20	369.988	-	-	7	1	1	G3BP2|ENST00000511868|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	G3BP2|ENST00000511868|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	4	6	6	24	26	24	26	6	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666451276	4	88021274	A	AT	509	PASS	AFF1	CCDS3616.1	r.?	-	-	Ins	intronic	I	88021274	88021276	1	24	479.569	-	-	1	1	1	AFF1|CCDS3616.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AFF1|CCDS3616.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	21	8	21	0	0	./.	2	7	6	8	24	21	24	21	6	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666481814	4	183595697	TTTTG	T	360	PASS	ODZ3	CCDS47165.1	r.?	-	-	Del	intronic	D	183595697	183595712	4	15	323.325	-	-	3	1	1	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	2	8	2	26	18	26	18	8	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666482193	4	184456233	TCAG	T	296	PASS	-	-	-	-	-	Del	-	D	184456233	184456237	3	18	377.213	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	5	5	6	27	21	27	21	5	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666488006	5	5714682	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	5714682	5714702	2	12	269.835	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	2	4	3	29	17	29	17	4	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666500487	5	41133672	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	41133672	41133682	1	18	368.738	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	19	0	0	./.	5	2	6	4	18	16	18	16	6	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666509207	5	74170941	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	74170941	74170949	1	11	533.649	-	-	7	1	-	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	10	0	11	1	24	18	26	19	11	1	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666510578	5	78511851	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	78511851	78511860	1	15	320.19	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	4	9	24	37	24	37	4	9	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666513415	5	87212518	GAAA	G	600	PASS	-	-	-	-	-	Del	-	D	87212518	87212526	3	27	539.67	-	-	7	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	8	2	9	18	27	18	27	2	9	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666517309	5	100951060	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	100951060	100951067	1	36	580.392	-	-	6	1	1	-	-	./.	0	0	0	0	12	16	12	17	0	0	./.	3	8	4	8	30	28	30	28	4	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666542031	5	180013574	CTG	C	420	PASS	SCGB3A1	CCDS4456.1	r.?	-	-	Del	downstream	D	180013574	180013578	2	20	377.769	-	-	1	1	1	SCGB3A1|CCDS4456.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SCGB3A1|CCDS4456.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	8	16	19	16	19	4	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666552965	6	27572238	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	27572238	27572239	1	12	266.741	-	-	0	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	4	2	26	19	27	19	4	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666572062	6	81445924	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	81445924	81445932	1	16	319.487	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	3	5	18	23	19	23	3	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666579404	6	106221615	GA	G	600	PASS	-	-	-	-	-	Del	-	D	106221615	106221624	1	32	539.502	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	3	7	4	8	10	22	10	22	4	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666598398	6	165603266	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	165603266	165603275	1	15	320.089	-	-	8	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	2	4	5	22	21	22	21	4	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666601149	7	2560670	TG	T	869	PASS	LFNG	CCDS34587.1	r.?	-	-	Del	intronic	D	2560670	2560678	1	66	805.729	-	-	7	1	1	LFNG|CCDS34587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LFNG|CCDS34587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	10	12	14	28	36	28	36	12	14	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666601568	7	3309571	GA	G	629	PASS	-	-	-	-	-	Del	-	D	3309571	3309581	1	42	586.011	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	6	5	15	12	38	40	38	40	15	12	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666605671	7	12679441	A	AT	509	PASS	SCIN	CCDS47545.1	r.?	-	-	Ins	intronic	I	12679441	12679449	1	30	479.464	-	-	7	1	1	SCIN|CCDS47545.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCIN|CCDS47545.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	23	10	23	0	0	./.	4	5	8	9	26	36	26	36	8	9	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666608376	7	20398145	CAAAG	C	687	PASS	ITGB8	CCDS5370.1	r.?	-	-	Del	intronic	D	20398145	20398154	4	56	699.783	-	-	2	1	1	ITGB8|CCDS5370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGB8|CCDS5370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	6	7	6	9	18	33	19	33	7	9	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666610700	7	25871230	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	25871230	25871240	1	10	266.369	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	1	24	33	24	33	4	1	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666612515	7	30305327	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	30305327	30305336	1	54	692.558	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	8	11	10	31	35	31	35	11	10	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666614484	7	36101611	GTCT	G	600	PASS	-	-	-	-	-	Del	-	D	36101611	36101621	3	36	533.941	-	-	3	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	5	5	5	6	25	23	25	23	5	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666615540	7	38816280	G	GT	749	PASS	VPS41	CCDS5457.1	r.935_936insa	c.880_881insA	p.T294fs*10	Ins	frameshift	I	38816280	38816287	1	54	689.548	-	-	6	1	1	VPS41|CCDS5457.1|r.935_936insa|c.880_881insA|p.T294fs*10|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	VPS41|CCDS5457.1|r.935_936insa|c.880_881insA|p.T294fs*10|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	13	8	13	8	0	0	./.	5	8	9	12	26	32	26	33	9	12	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666616926	7	42414270	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	42414270	42414279	1	56	690.15	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	6	9	11	24	35	24	35	9	11	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666640703	7	100905517	T	TAA	629	PASS	-	-	-	-	-	Ins	-	I	100905517	100905518	2	40	579.388	-	-	0	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	7	4	9	8	34	24	34	24	9	8	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666641704	7	102688670	G	GAT	480	PASS	FBXL13	CCDS47678.1	r.?	-	-	Ins	intronic	I	102688670	102688682	2	24	418.965	-	-	5	1	1	FBXL13|CCDS47678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FBXL13|CCDS47678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	3	5	6	42	30	43	31	5	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666658628	7	147942878	TAC	T	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147942878	147942895	2	12	269.379	-	-	8	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	4	29	31	29	31	2	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666663296	7	158317055	ATCTGCCCTGGAGTGGAGTCTGCCCTGGAGTGGAGTCGTCTGCCCTGGAGCGGAGTCTGCCCTGGAGTGGAGTCGTCTACCCTGGAGCGGAGTCTGCCCTGGAGCGGAGTCTGCCCTGGAGCGGAGTCTGCCCTGGAGTGGAGTCGTCTGCCCTGGAGTGGAG	A	298	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	158317055	158317252	162	15	322.653	-	-	1	1	-	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	4	6	4	0	0	./.	4	2	0	0	9	7	13	9	4	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666670170	8	17595561	TCA	T	720	PASS	MTUS1	CCDS43717.1	r.?	-	-	Del	intronic	D	17595561	17595565	2	49	648.756	-	-	1	1	1	MTUS1|CCDS43717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTUS1|CCDS43717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	6	6	6	6	22	22	22	22	6	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666688196	8	79192598	AAAT	A	269	PASS	-	-	-	-	-	Del	-	D	79192598	79192620	3	10	270.315	-	-	7	1	-	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	1	4	1	4	23	25	23	25	1	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666694398	8	101970412	TC	T	269	PASS	YWHAZ	CCDS6290.1	r.?	-	-	Del	upstream	D	101970412	101970414	1	12	263.692	-	-	1	1	1	YWHAZ|CCDS6290.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	YWHAZ|CCDS6290.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	3	12	3	12	0	0	./.	3	2	4	2	18	23	18	23	4	2	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666703473	8	132051337	TGAG	T	300	PASS	ADCY8	CCDS6363.1	r.?	-	-	Del	intronic	D	132051337	132051344	3	10	270.315	-	-	2	1	1	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	1	4	3	6	15	26	15	26	3	6	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666703828	8	133351620	CT	C	780	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Del	intronic	D	133351620	133351622	1	56	701.615	-	-	1	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	7	6	12	9	27	27	27	27	12	9	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666710593	9	8671926	T	TA	420	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	8671926	8671928	1	20	373.989	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	4	18	4	0	0	./.	4	3	6	3	20	16	20	16	6	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666730512	9	88259767	T	TA	360	PASS	AGTPBP1	CCDS6672.1	r.?	-	-	Ins	intronic	I	88259767	88259775	1	15	321.078	-	-	7	1	1	AGTPBP1|CCDS6672.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGTPBP1|CCDS6672.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	2	4	4	28	19	28	19	4	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666730725	9	88698466	G	GT	540	PASS	GOLM1	CCDS35054.1	r.?	-	-	Ins	intronic	I	88698466	88698475	1	30	481.617	-	-	8	1	1	GOLM1|CCDS35054.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GOLM1|CCDS35054.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	12	5	28	24	28	24	12	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666738137	9	113241499	G	GT	540	PASS	SVEP1	CCDS48004.1	r.?	-	-	Ins	intronic	I	113241499	113241508	1	24	478.607	-	-	8	1	1	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	14	9	0	0	./.	2	7	3	9	13	25	13	25	3	9	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666738180	9	113350550	AG	A	360	PASS	-	-	-	-	-	Del	-	D	113350550	113350552	1	15	324.691	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	2	7	3	23	18	23	18	7	3	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666739927	9	118014376	TTC	T	420	PASS	DEC1	CCDS6812.1	r.?	-	-	Del	intronic	D	118014376	118014383	2	20	378.806	-	-	3	1	1	DEC1|CCDS6812.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DEC1|CCDS6812.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	3	5	4	14	19	14	19	5	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666740358	9	119372224	A	AT	480	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119372224	119372232	1	24	426.9	-	-	7	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	14	8	0	0	./.	3	5	6	5	16	14	16	14	6	5	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666758130	X	48537262	AAACCAGCTCC	A	290	PASS	WAS	CCDS14303.1	r.?	-	-	Del	upstream	D	48537262	48537275	10	35	542.104	-	-	1	1	1	WAS|CCDS14303.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	WAS|ENST00000450772|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	6	4	6	4	23	11	23	11	6	4	1	1	1	1	1	1	1	1
2579551	PD14470a	PD14470b	2666763988	X	86138255	CT	C	360	PASS	-	-	-	-	-	Del	-	D	86138255	86138259	1	16	325.263	-	-	3	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	3	6	15	9	15	9	3	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671347371	1	30950379	CTG	C	449	PASS	-	-	-	-	-	Del	-	D	30950379	30950389	2	21	428.582	-	-	4	1	-	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	2	6	5	7	12	19	12	19	5	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671368132	1	90932288	TG	T	420	PASS	-	-	-	-	-	Del	-	D	90932288	90932290	1	18	376.063	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	2	6	2	18	12	18	12	6	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671369860	1	95245602	CA	C	300	PASS	-	-	-	-	-	Del	-	D	95245602	95245604	1	12	268.616	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	3	5	15	12	15	12	3	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671375845	1	113113798	CA	C	360	PASS	ST7L	CCDS848.1	r.?	-	-	Del	intronic	D	113113798	113113802	1	15	320.533	-	-	3	1	1	ST7L|CCDS848.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST7L|CCDS848.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	6	4	24	27	24	27	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671379833	1	142820210	AG	A	257	PASS	-	-	-	-	-	Del	-	D	142820210	142820215	1	16	429.786	-	-	4	1	1	-	-	./.	0	0	0	0	32	8	32	8	0	0	./.	7	1	7	1	48	18	48	18	7	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671388500	1	159502749	A	AAG	447	PASS	OR10J5	CCDS30910.1	r.?	-	-	Ins	downstream	I	159502749	159502751	2	30	461.835	-	-	0	1	-	OR10J5|CCDS30910.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	OR10J5|CCDS30910.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	16	10	18	10	0	0	./.	4	5	0	0	35	41	38	41	4	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671389827	1	162189309	GA	G	360	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Del	intronic	D	162189309	162189311	1	7	316.319	-	-	1	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	0	6	0	7	29	42	29	42	0	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671398111	1	179827719	T	TA	300	PASS	TOR1AIP2	CCDS1334.1	r.?	-	-	Ins	intronic	I	179827719	179827729	1	10	265.606	-	-	9	1	1	TOR1AIP2|CCDS1334.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TOR1AIP2|CCDS1334.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	1	4	1	45	39	45	39	4	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671398949	1	181417097	TTTCTC	T	598	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181417097	181417106	5	42	587.343	-	-	1	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	6	6	6	40	43	40	43	6	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671400833	1	185217924	AAG	A	420	PASS	C1orf26	CCDS1367.1	r.?	-	-	Del	intronic	D	185217924	185217928	2	8	367.032	-	-	1	1	1	C1orf26|CCDS1367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf26|CCDS1367.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	7	0	10	0	47	41	47	41	10	0	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671405002	1	193592561	TGA	T	660	PASS	-	-	-	-	-	Del	-	D	193592561	193592564	2	40	589.752	-	-	1	1	-	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	7	4	15	13	36	41	37	42	15	13	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671406506	1	196999682	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	196999682	196999698	2	16	321.135	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	3	3	3	43	36	43	36	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671407432	1	199025876	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	199025876	199025880	2	6	266.81	-	-	1	1	-	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	5	0	10	0	55	27	55	27	10	0	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671411637	1	206087320	G	GT	538	PASS	-	-	-	-	-	Ins	-	I	206087320	206087322	1	30	796.818	-	-	1	1	1	-	-	./.	0	0	0	0	10	2	10	2	0	0	./.	14	1	16	2	33	6	33	6	16	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671412602	1	208362069	A	AG	300	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Ins	intronic	I	208362069	208362070	1	10	262.596	-	-	0	1	-	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	12	0	0	./.	1	4	2	8	50	54	50	54	2	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671413695	1	211233927	TA	T	300	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	211233927	211233937	1	10	268.616	-	-	9	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	1	4	1	6	50	56	50	56	1	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671415091	1	214597066	G	GTAAACCCAGCA	348	PASS	PTPN14	CCDS1514.1	r.?	-	-	Ins	intronic	I	214597066	214597078	11	40	564.605	-	-	1	1	1	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPN14|CCDS1514.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	9	3	7	3	21	12	23	13	9	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671415441	1	215451014	G	GA	277	PASS	-	-	-	-	-	Ins	-	I	215451014	215451023	1	12	265.606	-	-	8	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	3	2	4	2	22	15	22	15	4	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671420997	1	231117537	ACTCTTTC	A	261	PASS	TTC13	CCDS1588.1	r.?	-	-	Del	upstream	D	231117537	231117546	7	24	483.509	-	-	1	1	1	TTC13|CCDS1588.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ARV1|CCDS1589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	7	2	6	17	16	17	17	2	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671429337	10	672384	C	CCCCCCGTCCCCGGGGTTACCCTCCGT	261	PASS	DIP2C	CCDS7054.1	r.?	-	-	Ins	intronic	I	672384	672398	26	28	343.946	-	-	0	1	1	DIP2C|CCDS7054.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIP2C|CCDS7054.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	9	11	0	0	./.	6	3	0	0	26	24	29	25	6	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671433627	10	10397809	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	10397809	10397819	1	30	474.593	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	4	6	4	20	20	21	20	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671434698	10	12711249	C	CAA	296	PASS	CAMK1D	CCDS7091.1	r.?	-	-	Ins	intronic	I	12711249	12711250	2	20	369.128	-	-	0	1	1	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	11	10	0	0	./.	3	4	0	0	30	30	32	31	3	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671435079	10	13414723	CT	C	360	PASS	-	-	-	-	-	Del	-	D	13414723	13414730	1	16	323.62	-	-	6	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	3	3	5	29	17	29	17	3	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671444657	10	34710410	G	GT	269	PASS	PARD3	CCDS7178.1	r.?	-	-	Ins	intronic	I	34710410	34710420	1	10	254.03	-	-	9	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	1	4	1	4	30	26	30	27	1	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671455952	10	67217108	T	TTAAAATAAATAAATTAAAATAAATAAA	276	PASS	-	-	-	-	-	Ins	-	I	67217108	67217121	27	36	376.81	-	-	0	1	1	-	-	./.	0	0	0	0	9	9	10	9	0	0	./.	5	5	1	3	10	17	14	19	5	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671471772	10	110375616	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	110375616	110375623	1	12	265.469	-	-	6	1	1	-	-	./.	0	0	0	0	20	8	20	9	0	0	./.	3	2	3	3	17	20	17	21	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671473354	10	114862189	T	TG	300	PASS	TCF7L2	CCDS7576.1	r.?	-	-	Ins	intronic	I	114862189	114862190	1	12	266.673	-	-	0	1	1	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	2	3	2	3	36	14	36	14	2	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671479976	10	132267156	CCTT	C	329	PASS	-	-	-	-	-	Del	-	D	132267156	132267160	3	15	323.62	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	4	3	5	25	19	25	19	3	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671479978	10	132274665	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	132274665	132274668	2	12	269.081	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	3	5	22	22	22	22	3	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671483642	11	6390234	TCTC	T	296	PASS	-	-	-	-	-	Del	-	D	6390234	6390240	3	18	377.826	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	2	5	3	18	18	18	18	5	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671487064	11	15660697	A	AAGAGAG	281	PASS	-	-	-	-	-	Ins	-	I	15660697	15660711	6	25	403.59	-	-	6	1	-	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	4	1	2	32	29	32	29	4	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671489575	11	22278271	GT	G	300	PASS	ANO5	CCDS31444.1	r.?	-	-	Del	intronic	D	22278271	22278281	1	12	270.306	-	-	9	1	-	ANO5|CCDS31444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO5|CCDS31444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	3	4	26	22	26	22	3	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671514983	11	92224271	G	GA	360	PASS	FAT3	CCDS44706.1	r.?	-	-	Ins	intronic	I	92224271	92224277	1	16	320.152	-	-	5	1	1	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	3	4	6	24	24	24	24	4	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671525191	11	125435897	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	125435897	125435907	1	10	266.693	-	-	9	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	1	4	1	5	11	23	11	23	1	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671531408	12	8057801	TAAG	T	569	PASS	-	-	-	-	-	Del	-	D	8057801	8057809	3	32	540.049	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	7	3	7	18	27	18	27	3	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671538139	12	24799067	T	TCA	300	PASS	-	-	-	-	-	Ins	-	I	24799067	24799086	2	10	264.004	-	-	9	1	-	-	-	./.	0	0	0	0	12	14	12	15	0	0	./.	4	1	1	0	25	31	25	31	4	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671541115	12	31956841	AAAG	A	689	PASS	-	-	-	-	-	Del	-	D	31956841	31956845	3	49	648.059	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	6	7	10	20	26	20	26	7	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671550861	12	58673340	TG	T	300	PASS	-	-	-	-	-	Del	-	D	58673340	58673342	1	6	268.218	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	0	7	0	52	34	52	34	7	0	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671553621	12	65959911	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	65959911	65959921	1	12	266.412	-	-	9	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	2	3	2	4	44	52	44	52	2	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671554024	12	66749000	ATG	A	360	PASS	GRIP1	CCDS41807.1	r.?	-	-	Del	intronic	D	66749000	66749017	2	15	324.03	-	-	8	1	-	GRIP1|CCDS41807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIP1|CCDS41807.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	4	2	4	39	58	39	58	3	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671555272	12	69670069	A	AT	300	PASS	MIR1279	CCDS8988.1	r.?	-	-	Ins	downstream	I	69670069	69670079	1	10	264.004	-	-	9	1	-	MIR1279|CCDS8988.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MIR1279|CCDS8988.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	15	20	15	20	0	0	./.	4	1	4	1	37	45	37	46	4	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671560959	12	84257034	TG	T	420	PASS	-	-	-	-	-	Del	-	D	84257034	84257041	1	18	373.218	-	-	6	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	5	2	11	4	18	15	18	15	11	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671566868	12	99438982	TTAC	T	389	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99438982	99438988	3	14	378.035	-	-	1	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	1	6	1	7	20	35	20	35	1	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671569132	12	105383734	TTTTTC	T	269	PASS	C12orf45	CCDS41825.1	r.?	-	-	Del	intronic	D	105383734	105383743	5	12	270.025	-	-	1	1	1	C12orf45|CCDS41825.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf45|CCDS41825.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	2	5	31	28	31	28	2	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671571505	12	110574773	CAG	C	360	PASS	IFT81	CCDS41831.1	r.?	-	-	Del	intronic	D	110574773	110574776	2	12	324.03	-	-	1	1	1	IFT81|CCDS41831.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFT81|CCDS41831.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	1	6	2	48	32	48	32	6	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671571512	12	110582044	CAG	C	389	PASS	IFT81	CCDS41831.1	r.?	-	-	Del	intronic	D	110582044	110582049	2	18	375.626	-	-	2	1	1	IFT81|CCDS41831.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFT81|CCDS41831.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	5	2	11	3	44	41	44	41	11	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671589802	13	41395443	A	AAT	300	PASS	-	-	-	-	-	Ins	-	I	41395443	41395445	2	12	264.757	-	-	0	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	2	0	0	15	15	15	15	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671595095	13	57612812	AT	A	360	PASS	-	-	-	-	-	Del	-	D	57612812	57612815	1	15	324.933	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	2	4	3	28	16	28	16	4	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671598790	13	66099960	GA	G	300	PASS	-	-	-	-	-	Del	-	D	66099960	66099970	1	12	270.175	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	4	3	25	27	25	27	4	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671599844	13	68905400	TAC	T	277	PASS	-	-	-	-	-	Del	-	D	68905400	68905416	2	12	270.777	-	-	7	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	3	3	30	18	30	18	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671601471	13	72709537	ACTCT	A	329	PASS	-	-	-	-	-	Del	-	D	72709537	72709544	4	12	324.33	-	-	3	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	1	6	20	35	20	35	1	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671606025	13	84101603	CCTT	C	689	PASS	-	-	-	-	-	Del	-	D	84101603	84101609	3	48	649.865	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	7	9	9	31	32	31	32	9	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671608447	13	90074829	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	90074829	90074835	1	60	749.747	-	-	5	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	9	5	9	7	41	41	41	42	9	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671609849	13	93748921	T	TCC	300	PASS	-	-	-	-	-	Ins	-	I	93748921	93748930	2	6	264.154	-	-	8	1	1	-	-	./.	0	0	0	0	6	4	6	4	0	0	./.	0	5	0	5	14	13	14	13	0	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671610108	13	94250397	A	AAATAAT	319	PASS	GPC6	CCDS9469.1	r.?	-	-	Ins	intronic	I	94250397	94250418	6	40	547.545	-	-	6	1	-	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	7	4	7	5	29	31	31	31	7	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671612589	13	99761993	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	99761993	99762003	1	10	264.154	-	-	9	1	-	-	-	./.	0	0	0	0	5	18	5	18	0	0	./.	1	4	1	4	28	50	29	51	1	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671612853	13	100317296	A	AT	540	PASS	CLYBL	ENST00000376360	r.?	-	-	Ins	intronic	I	100317296	100317305	1	24	477.164	-	-	8	1	1	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	7	3	10	20	40	20	40	3	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671614467	13	103971072	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	103971072	103971079	1	42	587.883	-	-	6	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	5	6	5	6	22	30	23	30	5	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671617767	13	111943947	G	GA	1140	PASS	ARHGEF7	CCDS45068.1	r.?	-	-	Ins	intronic	I	111943947	111943953	1	98	1017.51	-	-	5	1	1	ARHGEF7|CCDS45068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGEF7|CCDS45068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	6	13	11	21	24	40	25	40	11	21	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671628619	14	42557767	AT	A	600	PASS	-	-	-	-	-	Del	-	D	42557767	42557771	1	36	541.801	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	5	5	7	18	26	18	26	5	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671630057	14	46525873	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	46525873	46525883	1	12	267.288	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	3	2	3	2	36	25	36	25	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671635716	14	57840045	TG	T	540	PASS	-	-	-	-	-	Del	-	D	57840045	57840054	1	10	487.621	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	9	0	17	4	52	23	52	23	17	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671636990	14	60461385	AATACTATG	A	328	PASS	-	-	-	-	-	Del	-	D	60461385	60461394	8	70	812.702	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	9	7	8	34	35	34	36	7	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671638198	14	63078735	AG	A	720	PASS	-	-	-	-	-	Del	-	D	63078735	63078738	1	33	650.161	-	-	2	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	2	10	3	12	25	38	25	38	3	12	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671639227	14	64942440	TG	T	1565	PASS	AKAP5	CCDS9764.1	r.?	-	-	Del	downstream	D	64942440	64942444	1	189	1516.44	-	-	3	1	1	AKAP5|CCDS9764.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AKAP5|CCDS9764.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	7	7	7	0	0	./.	20	8	27	11	45	21	45	21	27	11	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671644489	14	79725871	C	CAT	360	PASS	NRXN3	CCDS9870.1	r.?	-	-	Ins	intronic	I	79725871	79725881	2	7	317.856	-	-	4	1	-	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	0	6	5	9	11	17	11	17	5	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671646217	14	85558939	CAT	C	480	PASS	-	-	-	-	-	Del	-	D	85558939	85558951	2	16	433.441	-	-	5	1	-	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	1	7	1	7	5	12	5	12	1	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671649848	14	96773888	G	GT	420	PASS	ATG2B	CCDS9944.2	r.?	-	-	Ins	intronic	I	96773888	96773893	1	20	375.046	-	-	4	1	1	ATG2B|CCDS9944.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATG2B|CCDS9944.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	4	3	7	12	18	12	18	3	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671650039	14	97442143	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	97442143	97442152	1	12	321.468	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	1	8	3	17	11	17	11	8	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671661688	15	39790267	G	GCT	540	PASS	-	-	-	-	-	Ins	-	I	39790267	39790284	2	24	476.939	-	-	8	1	1	-	-	./.	0	0	0	0	7	8	8	8	0	0	./.	2	7	2	7	24	27	24	27	2	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671665260	15	49199329	C	CA	600	PASS	SHC4	CCDS10130.1	r.?	-	-	Ins	intronic	I	49199329	49199339	1	32	526.989	-	-	9	1	1	SHC4|CCDS10130.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SHC4|CCDS10130.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	16	0	0	./.	7	3	8	4	28	29	28	30	8	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671688104	16	5434627	CAGA	C	929	PASS	-	-	-	-	-	Del	-	D	5434627	5434636	3	72	867.014	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	11	5	15	7	27	23	27	23	15	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671689623	16	8265510	TTA	T	449	PASS	-	-	-	-	-	Del	-	D	8265510	8265514	2	24	433.507	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	5	4	5	26	29	26	29	4	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671696316	16	22448149	AAAG	A	258	PASS	ENSG00000224154	ENST00000430965	r.17_19delAAG	c.17_19delAAG	p.E13delE	Del	inframe	D	22448149	22448173	3	12	319.712	-	-	7	1	-	ENSG00000224154|ENST00000430965|r.17_19delAAG|c.17_19delAAG|p.E13delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	ENSG00000224154|ENST00000430965|r.17_19delAAG|c.17_19delAAG|p.E13delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	13	8	13	8	0	0	./.	5	1	5	2	28	23	28	23	6	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671699872	16	29902176	TCTC	T	523	PASS	SEZ6L2	CCDS10659.1	r.?	-	-	Del	intronic	D	29902176	29902184	3	32	541.883	-	-	2	1	1	SEZ6L2|CCDS10659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEZ6L2|CCDS10659.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	7	8	9	29	32	29	32	8	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671716882	16	82735531	A	ATGGGTGGGTGCAGT	261	PASS	-	-	-	-	-	Ins	-	I	82735531	82735547	14	30	410.029	-	-	1	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	4	5	3	5	4	21	5	21	4	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671730803	17	30570436	C	CATATATCATATATATCATATATGATATATGATATATG	269	PASS	-	-	-	-	-	Ins	-	I	30570436	30570459	37	24	286.886	-	-	0	1	-	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	2	7	0	0	20	13	22	19	2	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671731195	17	31626224	A	AACCAAAACAGCATGGTACTGGT	293	PASS	ACCN1	CCDS42296.1	r.?	-	-	Ins	intronic	I	31626224	31626257	22	24	367.562	-	-	1	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	7	2	1	0	10	14	16	16	7	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671731473	17	32550622	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	32550622	32550631	1	12	259.323	-	-	8	1	1	-	-	./.	0	0	0	0	23	11	23	11	0	0	./.	3	2	5	3	15	26	15	27	5	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671737427	17	48303910	AT	A	300	PASS	-	-	-	-	-	Del	-	D	48303910	48303912	1	10	264.14	-	-	1	1	1	-	-	./.	0	0	0	0	3	14	3	14	0	0	./.	1	4	1	5	33	48	33	48	1	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671739117	17	51630506	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	51630506	51630507	1	10	265.344	-	-	0	1	1	-	-	./.	0	0	0	0	12	8	12	9	0	0	./.	4	1	5	1	70	33	72	34	5	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671739526	17	52612083	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	52612083	52612092	1	10	267.752	-	-	8	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	4	1	5	2	36	33	36	34	5	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671744617	17	61663504	A	AC	509	PASS	KCNH6	CCDS11638.1	r.?	-	-	Ins	intronic	I	61663504	61663505	1	10	481.953	-	-	0	1	-	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	0	9	3	2	43	32	43	32	3	11	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671746119	17	64460256	C	CT	600	PASS	PRKCA	CCDS11664.1	r.?	-	-	Ins	intronic	I	64460256	64460261	1	35	535.504	-	-	4	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	4	6	7	10	28	45	29	45	7	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671746218	17	64627411	AT	A	1260	PASS	PRKCA	CCDS11664.1	r.?	-	-	Del	intronic	D	64627411	64627420	1	130	1136	-	-	8	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	9	12	19	16	31	37	31	37	19	16	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671749422	17	70535297	C	CCACA	300	PASS	-	-	-	-	-	Ins	-	I	70535297	70535303	4	6	258.721	-	-	2	1	-	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	5	0	0	1	25	19	25	20	5	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671755896	18	292550	AAATT	A	329	PASS	-	-	-	-	-	Del	-	D	292550	292560	4	16	325.822	-	-	2	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	4	4	31	16	31	16	4	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671775142	18	57335650	A	AAATAAT	261	PASS	CCBE1	CCDS32838.1	r.?	-	-	Ins	intronic	I	57335650	57335675	6	18	455.62	-	-	8	1	-	CCBE1|CCDS32838.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCBE1|CCDS32838.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	1	8	1	7	13	23	15	24	1	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671776675	18	61849401	AAG	A	689	PASS	-	-	-	-	-	Del	-	D	61849401	61849404	2	48	651.043	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	7	9	10	19	20	19	20	9	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671781248	18	75962494	AC	A	480	PASS	-	-	-	-	-	Del	-	D	75962494	75962496	1	24	434.43	-	-	1	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	3	7	4	21	24	21	24	7	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671788048	19	11487972	C	CT	300	PASS	EPOR	CCDS12260.1	r.?	-	-	Ins	downstream	I	11487972	11487974	1	10	267.744	-	-	1	1	1	EPOR|CCDS12260.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	EPOR|CCDS12260.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	3	14	3	0	0	./.	4	1	6	1	31	14	31	14	6	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671797423	19	32548908	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	32548908	32548911	1	24	429.353	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	5	5	5	18	15	18	15	5	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671802994	19	45433120	AAAG	A	418	PASS	-	-	-	-	-	Del	-	D	45433120	45433126	3	21	432.965	-	-	1	1	-	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	6	0	0	17	24	17	24	2	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671810433	19	58947111	C	CA	420	PASS	ZNF132	CCDS12980.1	r.?	-	-	Ins	intronic	I	58947111	58947117	1	20	375.082	-	-	5	1	1	ZNF132|CCDS12980.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF132|CCDS12980.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	4	4	4	28	23	29	23	4	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671821767	2	32263719	T	TTG	300	PASS	DPY30	CCDS1777.1	r.?	-	-	Ins	intronic	I	32263719	32263721	2	12	254.031	-	-	0	1	-	DPY30|CCDS1777.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPY30|CCDS1777.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	2	4	2	27	14	27	14	4	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671822987	2	35041009	T	TATACACATATATACACACACACAATGTGTATATATATAC	360	PASS	-	-	-	-	-	Ins	-	I	35041009	35041011	39	16	182.017	-	-	0	1	-	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	3	0	0	14	19	14	19	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671825543	2	41615011	T	TAA	300	PASS	-	-	-	-	-	Ins	-	I	41615011	41615021	2	12	263.062	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	2	1	0	24	22	24	22	4	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671826622	2	44087916	GCTGTATAGAATTCTCACCCTCTGGATAGAACTGTCACTATCTGT	G	505	PASS	ABCG8	CCDS1815.1	r.?	-	-	Del	intronic	D	44087916	44087993	44	36	590.777	-	-	1	1	1	ABCG8|CCDS1815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCG8|CCDS1815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	8	0	0	13	14	16	22	3	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671833555	2	63862765	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	63862765	63862771	1	20	372.501	-	-	5	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	3	5	10	20	20	20	20	5	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671847801	2	106826506	TCTCTA	T	269	PASS	-	-	-	-	-	Del	-	D	106826506	106826515	5	15	322.899	-	-	1	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	4	2	6	4	22	17	22	17	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671851528	2	118489317	CAA	C	300	PASS	-	-	-	-	-	Del	-	D	118489317	118489321	2	12	264.266	-	-	3	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	3	2	5	12	10	12	10	2	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671852641	2	121790129	AG	A	300	PASS	-	-	-	-	-	Del	-	D	121790129	121790139	1	10	269.082	-	-	9	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	1	4	4	6	13	21	13	21	4	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671864127	2	154499163	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	154499163	154499171	2	15	322.899	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	2	4	15	10	15	10	2	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671866203	2	161351047	CCAGA	C	300	PASS	RBMS1	CCDS2213.1	r.?	-	-	Del	upstream	D	161351047	161351055	4	6	269.082	-	-	1	1	1	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	4	11	4	0	0	./.	5	0	8	1	32	12	32	12	8	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671874809	2	187156279	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	187156279	187156287	1	30	478.929	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	17	19	0	0	./.	4	5	9	7	29	17	30	17	9	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671895606	20	245668	T	TG	389	PASS	DEFB132	CCDS12993.1	r.?	-	-	Ins	downstream	I	245668	245669	1	20	374.834	-	-	0	1	-	DEFB132|CCDS12993.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DEFB132|CCDS12993.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	14	7	14	0	0	./.	3	4	0	0	12	21	12	21	3	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671897815	20	5224486	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	5224486	5224494	2	16	325.931	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	3	4	4	14	19	14	19	4	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671917979	20	53785317	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	53785317	53785324	1	22	590.917	-	-	6	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	1	10	3	12	21	27	21	28	3	12	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671920499	20	60033212	TTGATGACAGTGCTGATGCTGGTGGTGGCGGTGATGGTTATGGTCATGATGTTGA	T	358	PASS	CDH4	CCDS13488.1	r.?	-	-	Del	intronic	D	60033212	60033270	54	20	373.63	-	-	1	1	-	CDH4|CCDS13488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH4|CCDS13488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	21	24	21	0	0	./.	4	3	0	0	34	34	38	35	4	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671925957	21	16008143	T	TTTATTATTA	435	PASS	ENSG00000243440	ENST00000435732	r.?	-	-	Ins	intronic	I	16008143	16008166	9	66	733.001	-	-	7	1	-	ENSG00000243440|ENST00000435732|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000243440|ENST00000435732|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	10	5	10	9	20	39	23	41	13	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671928637	21	21583320	CACAA	C	389	PASS	-	-	-	-	-	Del	-	D	21583320	21583340	4	18	379.074	-	-	4	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	2	6	3	34	22	34	22	6	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671928874	21	21994956	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	21994956	21994966	1	32	536.029	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	16	13	0	0	./.	3	7	6	9	41	30	42	30	6	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671934517	21	33982489	G	GTACTGGTCTTATTCA	348	PASS	C21orf59	CCDS13617.1	r.?	-	-	Ins	intronic	I	33982489	33982506	15	13	543.534	-	-	1	1	1	C21orf59|CCDS13617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C21orf59|CCDS13617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	0	12	0	6	14	25	15	32	0	12	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671940023	21	44061352	C	CCA	480	PASS	-	-	-	-	-	Ins	-	I	44061352	44061354	2	9	424.368	-	-	0	1	1	-	-	./.	0	0	0	0	3	7	3	7	0	0	./.	0	8	0	10	6	23	6	23	0	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671952262	22	43347284	CA	C	269	PASS	PACSIN2	CCDS43023.1	r.?	-	-	Del	intronic	D	43347284	43347287	1	12	273.354	-	-	2	1	1	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	2	4	3	14	19	14	19	4	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671952470	22	43832377	AAGGCCTTCCCTTCTGTTTGGC	A	261	PASS	MPPED1	CCDS46723.1	r.?	-	-	Del	intronic	D	43832377	43832403	21	28	491.436	-	-	1	1	1	MPPED1|CCDS46723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MPPED1|CCDS46723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	6	3	6	10	17	11	17	4	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671958663	3	8326077	TAAG	T	389	PASS	ENSG00000234563	ENST00000446572	r.?	-	-	Del	intronic	D	8326077	8326087	3	20	376.36	-	-	3	1	1	ENSG00000234563|ENST00000446572|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000234563|ENST00000446572|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	4	4	20	22	20	22	4	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671969621	3	35793318	TATTC	T	300	PASS	ENSG00000172995	CCDS2661.1	r.?	-	-	Del	intronic	D	35793318	35793324	4	10	269.258	-	-	1	1	1	ENSG00000172995|CCDS2661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000172995|CCDS2661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	1	4	1	5	21	27	21	27	1	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671976460	3	54219306	CT	C	300	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Del	intronic	D	54219306	54219316	1	12	269.258	-	-	9	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	3	2	21	22	21	22	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671976608	3	54755438	AT	A	654	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Del	intronic	D	54755438	54755440	1	42	592.368	-	-	1	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	6	9	7	21	19	21	19	9	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671981004	3	65864208	AG	A	420	PASS	MAGI1	CCDS33781.1	r.?	-	-	Del	intronic	D	65864208	65864210	1	8	376.962	-	-	1	1	1	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	7	0	7	0	27	28	27	28	7	0	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671981859	3	68159120	C	CT	360	PASS	FAM19A1	ENST00000478136	r.?	-	-	Ins	intronic	I	68159120	68159129	1	12	314.079	-	-	8	1	1	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	5	1	8	1	34	22	36	22	8	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671982030	3	68814568	AT	A	269	PASS	FAM19A4	CCDS2907.1	r.?	-	-	Del	intronic	D	68814568	68814578	1	12	268.656	-	-	9	1	1	FAM19A4|CCDS2907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM19A4|CCDS2907.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	2	3	3	3	19	17	19	17	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671983550	3	72703719	CCAT	C	480	PASS	AC103560.1	ENST00000509224	r.?	-	-	Del	intronic	D	72703719	72703729	3	21	429.007	-	-	3	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	2	6	3	7	14	23	14	23	3	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671984478	3	75098169	TC	T	660	PASS	-	-	-	-	-	Del	-	D	75098169	75098171	1	42	592.368	-	-	1	1	1	-	-	./.	0	0	0	0	22	8	22	8	0	0	./.	5	6	6	8	17	23	17	23	6	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671990240	3	88787538	TA	T	720	PASS	-	-	-	-	-	Del	-	D	88787538	88787546	1	49	646.22	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	6	6	8	7	26	33	26	33	8	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671998720	3	114218556	C	CT	480	PASS	ZBTB20	CCDS2981.1	r.?	-	-	Ins	intronic	I	114218556	114218565	1	25	425.997	-	-	8	1	1	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	4	7	5	23	33	25	33	7	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2671999878	3	117427128	TA	T	360	PASS	-	-	-	-	-	Del	-	D	117427128	117427132	1	16	320.1	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	4	3	26	20	26	20	4	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672003210	3	125897794	T	TAA	449	PASS	ALDH1L1	CCDS3034.1	r.?	-	-	Ins	intronic	I	125897794	125897799	2	16	409.741	-	-	4	1	1	ALDH1L1|CCDS3034.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ALDH1L1|CCDS3034.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	1	7	1	0	33	25	34	25	2	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672007234	3	137502841	GGAT	GTA	989	PASS	-	-	-	-	-	Complex	-	DI	137502842	137502844	3	90	0	-	-	0	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	9	8	0	0	25	24	25	24	9	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672027714	3	188292497	CTG	C	300	PASS	LPP	CCDS3291.1	r.?	-	-	Del	intronic	D	188292497	188292513	2	12	269.258	-	-	7	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	2	3	23	15	23	15	2	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672037201	4	15008471	CAT	C	480	PASS	CPEB2	CCDS3413.1	r.?	-	-	Del	intronic	D	15008471	15008475	2	24	431.035	-	-	1	1	1	CPEB2|CCDS3413.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPEB2|CCDS3413.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	5	3	12	16	12	16	5	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672040986	4	27414793	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	27414793	27414801	1	18	372.941	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	5	4	5	15	21	16	21	4	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672049069	4	52960614	G	GA	300	PASS	SPATA18	CCDS3489.1	r.?	-	-	Ins	intronic	I	52960614	52960623	1	12	266.387	-	-	8	1	1	SPATA18|CCDS3489.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPATA18|CCDS3489.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	7	4	16	15	16	15	7	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672052413	4	62504223	TA	T	360	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62504223	62504231	1	12	323.276	-	-	7	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	1	7	2	26	22	26	22	7	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672056732	4	74058063	C	CA	300	PASS	ANKRD17	CCDS34004.1	r.?	-	-	Ins	intronic	I	74058063	74058072	1	10	266.387	-	-	8	1	-	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	4	1	6	3	32	27	32	27	6	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672065653	4	97527278	CA	C	360	PASS	-	-	-	-	-	Del	-	D	97527278	97527280	1	16	323.276	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	3	3	34	16	34	16	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672069024	4	106374803	TAAAAG	T	298	PASS	PPA2	CCDS3667.1	r.254-9_254-5delcuuuu	c.223-9_223-5delctttt	p.?	Del	splice region	D	106374803	106374815	5	15	320.266	-	-	2	1	1	PPA2|CCDS3667.1|r.254-9_254-5delcuuuu|c.223-9_223-5delctttt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	PPA2|CCDS3667.1|r.254-9_254-5delcuuuu|c.223-9_223-5delctttt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	3	5	21	29	21	29	3	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672073993	4	120030661	GA	G	780	PASS	-	-	-	-	-	Del	-	D	120030661	120030665	1	50	700.432	-	-	3	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	9	5	14	11	26	11	26	5	14	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672074788	4	122056535	ACTT	A	540	PASS	TNIP3	CCDS3718.1	r.?	-	-	Del	intronic	D	122056535	122056548	3	30	483.71	-	-	4	1	-	TNIP3|CCDS3718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNIP3|CCDS3718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	4	7	11	33	25	33	25	7	11	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672075909	4	125004724	TAA	T	300	PASS	-	-	-	-	-	Del	-	D	125004724	125004728	2	12	269.397	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	6	4	23	19	23	19	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672078673	4	132842510	AT	A	407	PASS	-	-	-	-	-	Del	-	D	132842510	132842517	1	8	377.156	-	-	6	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	0	7	2	10	12	36	12	36	2	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672081351	4	140090500	T	TC	300	PASS	ELF2	CCDS3744.1	r.?	-	-	Ins	intronic	I	140090500	140090501	1	12	254.346	-	-	0	1	-	ELF2|CCDS3744.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ELF2|CCDS3744.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	2	0	0	18	14	19	14	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672094252	4	173191703	CATTT	C	300	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Del	intronic	D	173191703	173191710	4	10	269.397	-	-	1	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	1	4	3	4	15	19	15	19	3	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672097838	4	181814610	C	CAT	300	PASS	-	-	-	-	-	Ins	-	I	181814610	181814624	2	12	262.774	-	-	6	1	-	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	2	6	4	16	21	16	21	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672105046	5	4877991	TC	T	300	PASS	ENSG00000224867	ENST00000416839	r.?	-	-	Del	intronic	D	4877991	4877993	1	10	268.802	-	-	1	1	1	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	1	4	1	4	16	35	16	35	1	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672106495	5	8531564	AT	A	300	PASS	-	-	-	-	-	Del	-	D	8531564	8531573	1	10	266.996	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	1	4	3	6	20	42	20	42	3	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672109515	5	16518957	AT	A	480	PASS	FAM134B	CCDS43304.1	r.?	-	-	Del	intronic	D	16518957	16518961	1	21	431.046	-	-	3	1	1	FAM134B|CCDS43304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM134B|CCDS43304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	2	6	4	7	28	28	28	28	4	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672117718	5	35115024	ACTCTT	A	269	PASS	PRLR	CCDS3909.1	r.?	-	-	Del	intronic	D	35115024	35115034	5	12	269.404	-	-	1	1	1	PRLR|CCDS3909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRLR|CCDS3909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	5	4	32	19	32	19	5	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672126984	5	63189490	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	63189490	63189510	2	12	269.404	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	2	3	2	3	24	14	24	14	2	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672127122	5	63743154	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	63743154	63743164	1	40	580.648	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	7	4	8	6	28	26	28	26	8	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672128922	5	68177773	G	GAT	360	PASS	-	-	-	-	-	Ins	-	I	68177773	68177791	2	15	316.06	-	-	8	1	-	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	4	2	6	4	35	31	36	31	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672131104	5	74203468	G	GT	449	PASS	-	-	-	-	-	Ins	-	I	74203468	74203478	1	25	424.424	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	10	13	0	0	./.	4	4	5	5	27	30	28	30	5	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672137546	5	89825137	GCCGAGCCCGGCCCTGC	G	261	PASS	LYSMD3	CCDS43338.1	r.?	-	-	Del	intronic	D	89825137	89825154	16	28	481.315	-	-	1	1	1	LYSMD3|CCDS43338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LYSMD3|CCDS43338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	3	6	3	7	13	16	13	16	3	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672138958	5	94482161	CCTGTAAGTA	C	261	PASS	MCTP1	ENST00000515393	r.?	-	-	Del	intronic	D	94482161	94482173	9	24	484.927	-	-	1	1	1	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	7	2	10	2	27	14	27	14	10	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672146762	5	114307766	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	114307766	114307772	1	15	319.672	-	-	5	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	4	4	25	21	26	21	4	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672150223	5	122727366	C	CA	780	PASS	CEP120	CCDS4134.2	r.?	-	-	Ins	intronic	I	122727366	122727375	1	54	690.215	-	-	8	1	1	CEP120|CCDS4134.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP120|CCDS4134.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	5	8	6	8	29	31	29	31	6	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672156341	5	138648039	GGCCTCCCAGAGT	G	290	PASS	SNHG4	CCDS4210.1	r.?	-	-	Del	intronic	D	138648039	138648054	12	36	538.808	-	-	1	1	1	SNHG4|CCDS4210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNHG4|CCDS4210.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	5	4	5	12	16	13	16	5	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672159584	5	146759682	GA	G	600	PASS	STK32A	CCDS47299.1	r.?	-	-	Del	intronic	D	146759682	146759691	1	36	538.808	-	-	8	1	1	STK32A|CCDS47299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK32A|CCDS47299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	5	7	6	25	32	25	32	7	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672160256	5	148687327	CT	C	358	PASS	AFAP1L1	CCDS34274.1	r.?	-	-	Del	intronic	D	148687327	148687331	1	20	373.553	-	-	3	1	1	AFAP1L1|CCDS34274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFAP1L1|CCDS34274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	3	7	5	22	17	22	17	7	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672171307	5	176429799	A	AAAT	749	PASS	UIMC1	CCDS4408.1	r.?	-	-	Ins	intronic	I	176429799	176429820	3	50	676.368	-	-	6	1	-	UIMC1|CCDS4408.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	UIMC1|CCDS4408.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	4	9	4	13	21	36	24	36	4	13	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672179755	6	15229118	C	CTTTGTTTTGT	551	PASS	-	-	-	-	-	Ins	-	I	15229118	15229146	10	104	910.59	-	-	5	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	7	12	4	9	39	46	45	49	9	12	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672183682	6	24512905	G	GTTTGT	629	PASS	ALDH5A1	CCDS4555.1	r.?	-	-	Ins	intronic	I	24512905	24512934	5	36	560.297	-	-	5	1	-	ALDH5A1|CCDS4555.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALDH5A1|CCDS4555.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	15	12	0	0	./.	8	3	11	5	36	23	36	23	11	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672184388	6	26441043	T	TGTGC	298	PASS	BTN3A3	CCDS4611.1	r.?	-	-	Ins	intronic	I	26441043	26441045	4	12	306.821	-	-	0	1	-	BTN3A3|CCDS4611.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BTN3A3|CCDS4611.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	1	5	4	6	22	20	22	20	4	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672187633	6	33477183	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	33477183	33477187	1	10	266.722	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	5	3	18	12	18	12	5	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672192691	6	47483336	G	GA	1109	PASS	CD2AP	CCDS34472.1	r.?	-	-	Ins	intronic	I	47483336	47483343	1	108	1008.73	-	-	6	1	1	CD2AP|CCDS34472.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CD2AP|CCDS34472.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	8	11	13	13	20	28	20	29	13	13	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672192694	6	47491015	TATTA	TC	569	PASS	CD2AP	CCDS34472.1	r.?	-	-	Complex	intronic	DI	47491016	47491019	4	36	0	-	-	0	1	1	CD2AP|CCDS34472.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CD2AP|CCDS34472.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	5	5	0	0	15	19	15	19	5	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672193417	6	50040672	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	50040672	50040676	1	36	586.788	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	8	7	10	16	23	16	23	7	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672200467	6	72102509	TA	T	300	PASS	-	-	-	-	-	Del	-	D	72102509	72102513	1	10	269.732	-	-	3	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	1	4	2	5	12	21	12	21	2	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672210317	6	103316545	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	103316545	103316553	1	6	266.722	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	13	15	0	0	./.	5	0	5	2	25	16	25	17	5	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672214418	6	114370370	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	114370370	114370374	2	6	267.926	-	-	1	1	-	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	5	0	5	0	19	10	19	10	5	0	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672214522	6	114803087	GTCTTT	G	269	PASS	-	-	-	-	-	Del	-	D	114803087	114803107	5	12	269.732	-	-	3	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	3	3	27	17	27	17	3	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672220494	6	134500281	AT	A	360	PASS	SGK1	CCDS47476.1	r.?	-	-	Del	intronic	D	134500281	134500288	1	16	323.678	-	-	6	1	1	SGK1|CCDS47476.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGK1|CCDS47476.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	7	5	14	17	14	17	7	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672229559	6	160056137	A	AAC	300	PASS	-	-	-	-	-	Ins	-	I	160056137	160056139	2	12	258.895	-	-	0	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	3	2	21	29	21	29	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672230488	6	162460188	AC	A	300	PASS	PARK2	CCDS5281.1	r.?	-	-	Del	intronic	D	162460188	162460190	1	12	266.722	-	-	1	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	5	3	18	23	18	23	5	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672231628	6	165652290	AT	A	600	PASS	-	-	-	-	-	Del	-	D	165652290	165652298	1	35	539.464	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	4	7	7	18	15	18	15	7	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672241699	7	19127118	ATCT	A	772	PASS	-	-	-	-	-	Del	-	D	19127118	19127123	3	84	916.669	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	11	6	12	10	37	24	37	24	12	10	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672246232	7	30027264	TA	T	300	PASS	SCRN1	CCDS5422.1	r.?	-	-	Del	intronic	D	30027264	30027268	1	10	269.609	-	-	3	1	1	SCRN1|CCDS5422.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SCRN1|CCDS5422.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	1	4	1	5	20	23	20	23	1	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672247729	7	33906573	AAAG	A	329	PASS	-	-	-	-	-	Del	-	D	33906573	33906581	3	12	323.53	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	5	1	6	17	32	17	32	1	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672249085	7	37559295	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	37559295	37559296	1	42	585.914	-	-	0	1	-	-	-	./.	0	0	0	0	10	7	10	8	0	0	./.	6	5	13	8	24	19	24	19	13	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672252059	7	45118242	ATGAGGGGACACCAGAGAGTAATGAGGGGACATCAGAGAGTAATGAGGGGACATCAAGGCGG	A	261	PASS	NACAD	CCDS47582.1	r.?	-	-	Del	downstream	D	45118242	45118327	61	30	470.846	-	-	1	1	1	NACAD|CCDS47582.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NACAD|CCDS47582.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	6	8	6	0	0	./.	5	4	0	0	21	25	25	29	5	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672265788	7	78206524	AT	A	342	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	78206524	78206529	1	12	323.53	-	-	4	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	1	5	2	6	18	28	18	28	2	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672278040	7	110339624	CGA	C	360	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Del	intronic	D	110339624	110339629	2	12	320.52	-	-	2	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	1	5	1	6	14	14	14	14	1	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672278188	7	110835908	C	CATTTCATTTCATTTTTGCTCTATCATTTCATTTCATTTT	300	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Ins	intronic	I	110835908	110835918	39	12	152.207	-	-	0	1	-	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	2	0	0	23	32	23	32	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672288783	7	138986467	G	GT	300	PASS	UBN2	CCDS43655.1	r.7709_7710insu	c.?	p.?	Ins	3'UTR variant	I	138986467	138986477	1	10	266.598	-	-	9	1	-	UBN2|CCDS43655.1|r.7709_7710insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	UBN2|CCDS43655.1|r.7709_7710insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	17	17	17	18	0	0	./.	1	4	1	4	33	38	34	38	1	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672292476	7	147611647	A	AG	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	147611647	147611648	1	12	264.19	-	-	0	1	-	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	2	4	16	27	16	27	2	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672311320	8	38525990	G	GGC	360	PASS	-	-	-	-	-	Ins	-	I	38525990	38525991	2	15	306.228	-	-	0	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	2	4	26	20	26	20	2	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672313091	8	42119848	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	42119848	42119852	2	12	268.535	-	-	1	1	-	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	3	2	42	29	42	29	3	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672314662	8	48892401	CTTGT	C	269	PASS	MCM4	CCDS6143.1	r.?	-	-	Del	downstream	D	48892401	48892408	4	12	269.74	-	-	1	1	1	MCM4|CCDS6143.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MCM4|CCDS6143.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	9	17	9	0	0	./.	2	3	3	4	50	42	50	42	3	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672316348	8	53021655	GA	G	360	PASS	ST18	CCDS6149.1	r.?	-	-	Del	downstream	D	53021655	53021658	1	15	323.688	-	-	2	1	1	ST18|CCDS6149.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ST18|CCDS6149.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	17	10	17	0	0	./.	2	4	4	7	28	35	28	35	4	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672323895	8	71354040	AAAGAAAGAAAGAAGAAA	AAGAAAGAAGAAAG	319	PASS	-	-	-	-	-	Complex	-	DI	71354041	71354057	17	42	0	-	-	0	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	5	0	0	50	33	52	35	6	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672330613	8	86432833	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	86432833	86432843	1	70	797.78	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	9	12	14	27	40	27	41	12	14	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672330721	8	86968196	GAAAACTAGAAAGTGAATCTTAGATTTAATGTAAAAAGTAATGAAGAATCTTAA	G	464	PASS	-	-	-	-	-	Del	-	D	86968196	86968251	53	72	863.167	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	11	5	4	0	15	18	22	23	11	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672331911	8	89675548	TC	T	1260	PASS	-	-	-	-	-	Del	-	D	89675548	89675550	1	130	1131.7	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	9	12	12	21	25	36	25	36	12	21	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672332866	8	91901366	AAAT	A	300	PASS	NECAB1	CCDS47889.1	r.?	-	-	Del	intronic	D	91901366	91901385	3	10	269.74	-	-	6	1	1	NECAB1|CCDS47889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NECAB1|CCDS47889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	1	4	1	4	36	53	36	53	1	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672336515	8	100018693	A	ACACAT	478	PASS	-	-	-	-	-	Ins	-	I	100018693	100018694	5	30	454.826	-	-	0	1	-	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	5	4	5	4	36	17	36	17	5	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672339224	8	105883260	TAA	T	1409	PASS	-	-	-	-	-	Del	-	D	105883260	105883264	2	168	1294.75	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	13	11	18	15	46	31	46	31	18	15	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672339703	8	107075927	GCATGTGTCTTCACATTCTGCTTCTTAAAATATATTATATATAT	GTATAAGGGCATGTGTCTTCACATTCTGCTTC	464	PASS	-	-	-	-	-	Complex	-	DI	107075928	107075970	43	81	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	8	8	0	0	32	27	32	31	8	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672342407	8	113646978	C	CT	300	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113646978	113646988	1	12	264.923	-	-	9	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	2	3	4	5	34	32	34	32	4	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672343698	8	117069441	AAG	A	300	PASS	AF130342.1	ENST00000505156	r.?	-	-	Del	intronic	D	117069441	117069460	2	12	269.74	-	-	9	1	-	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	2	3	25	30	25	30	2	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672347020	8	124337530	A	AT	420	PASS	ATAD2	CCDS6343.1	r.?	-	-	Ins	intronic	I	124337530	124337534	1	8	368.604	-	-	3	1	-	ATAD2|CCDS6343.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATAD2|CCDS6343.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	4	10	4	0	0	./.	7	0	10	3	30	30	30	30	10	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672348407	8	127313337	GGGAAGGAGGAAAGGTGA	G	290	PASS	-	-	-	-	-	Del	-	D	127313337	127313360	17	36	539.479	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	5	4	5	41	35	41	35	5	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672348598	8	127742833	TGGAAAGA	T	348	PASS	-	-	-	-	-	Del	-	D	127742833	127742848	7	33	647.375	-	-	2	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	10	2	9	2	45	26	46	26	10	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672350349	8	131877915	GTTTA	G	540	PASS	ADCY8	CCDS6363.1	r.?	-	-	Del	intronic	D	131877915	131877927	4	30	485.531	-	-	2	1	1	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	4	6	7	44	36	44	36	6	7	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672362902	9	23146414	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	23146414	23146421	1	10	267.758	-	-	6	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	1	5	2	17	17	17	17	5	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672364827	9	29259197	ACCTGTCCACTGGG	A	290	PASS	-	-	-	-	-	Del	-	D	29259197	29259214	13	35	541.536	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	4	5	4	18	13	19	13	6	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672373021	9	74079007	TC	T	480	PASS	-	-	-	-	-	Del	-	D	74079007	74079016	1	21	433.229	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	6	3	9	10	26	10	26	3	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672381022	9	96424002	G	GGGATGGATGGATGAGT	261	PASS	PHF2	CCDS35069.1	r.?	-	-	Ins	intronic	I	96424002	96424021	16	30	394.665	-	-	1	1	-	PHF2|CCDS35069.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHF2|CCDS35069.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	5	1	2	26	25	28	27	4	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672382544	9	100859723	GCTCC	G	329	PASS	TRIM14	CCDS6734.1	r.?	-	-	Del	intronic	D	100859723	100859728	4	16	323.115	-	-	1	1	1	TRIM14|CCDS6734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM14|CCDS6734.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	5	4	14	18	14	18	5	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672385932	9	111132384	CCAGT	CCTA	327	PASS	-	-	-	-	-	Complex	-	DI	111132385	111132388	4	18	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	5	2	0	0	22	9	22	9	5	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672392116	9	128617191	T	TCTAC	658	PASS	PBX3	CCDS6865.1	r.?	-	-	Ins	intronic	I	128617191	128617192	4	45	620.944	-	-	0	1	1	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	8	4	10	5	19	15	19	15	10	5	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672399313	X	9143052	AT	A	389	PASS	-	-	-	-	-	Del	-	D	9143052	9143054	1	8	336.218	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	7	0	6	0	20	19	21	19	7	0	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672401175	X	15095390	AACTC	A	627	PASS	-	-	-	-	-	Del	-	D	15095390	15095402	4	48	648.621	-	-	2	1	1	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	5	7	6	8	18	21	18	21	6	8	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672402829	X	19835734	A	AT	300	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Ins	intronic	I	19835734	19835741	1	10	267.248	-	-	6	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	1	5	1	29	23	30	23	5	1	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672403342	X	21949089	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	21949089	21949097	1	7	320.096	-	-	7	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	0	7	2	33	20	33	21	7	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672410964	X	45437147	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	45437147	45437155	1	12	316.484	-	-	7	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	1	5	1	6	16	24	16	24	1	6	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672413345	X	53721684	TC	T	660	PASS	-	-	-	-	-	Del	-	D	53721684	53721689	1	42	594.569	-	-	4	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	6	7	9	22	27	22	27	7	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672420785	X	83023280	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	83023280	83023289	1	10	267.248	-	-	8	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	4	1	5	2	17	26	17	26	5	2	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672424442	X	93629770	GAAA	G	606	PASS	-	-	-	-	-	Del	-	D	93629770	93629775	3	36	593.967	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	8	3	9	4	30	19	31	19	10	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672425684	X	97413133	AG	A	840	PASS	-	-	-	-	-	Del	-	D	97413133	97413137	1	64	756.724	-	-	3	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	7	7	10	9	28	26	28	26	10	9	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672426008	X	98645402	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	98645402	98645406	2	16	324.31	-	-	3	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	3	4	3	24	18	24	18	4	3	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672438673	X	139085018	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	139085018	139085026	1	12	267.248	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	4	28	20	28	20	2	4	1	1	1	1	1	1	1	1
2586477	PD14474a	PD14474b	2672441152	X	146322238	AT	A	360	PASS	MIR508	ENST00000384857	r.?	-	-	Del	upstream	D	146322238	146322241	1	15	323.708	-	-	2	1	1	MIR508|ENST00000384857|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	MIR508|ENST00000384857|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	6	4	27	24	27	24	6	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517848795	1	59043554	TTAAA	T	507	PASS	TACSTD2	CCDS609.1	r.?	-	-	Del	upstream	D	59043554	59043563	4	35	537.927	-	-	2	1	1	TACSTD2|CCDS609.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TACSTD2|CCDS609.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	17	13	17	0	0	./.	6	4	6	5	15	16	15	16	6	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517856156	1	82409523	AT	A	360	PASS	LPHN2	CCDS689.1	r.?	-	-	Del	intronic	D	82409523	82409533	1	16	322.515	-	-	9	1	1	LPHN2|CCDS689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPHN2|CCDS689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	3	4	3	23	26	23	26	4	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517856937	1	84984964	TG	T	480	PASS	SPATA1	CCDS44168.1	r.?	-	-	Del	intronic	D	84984964	84984966	1	21	430.823	-	-	1	1	1	SPATA1|CCDS44168.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPATA1|CCDS44168.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	2	6	3	6	23	29	23	29	3	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517862170	1	102402079	CATACTGCCAAA	C	290	PASS	OLFM3	CCDS30781.1	r.?	-	-	Del	intronic	D	102402079	102402092	11	35	538.529	-	-	1	1	1	OLFM3|CCDS30781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OLFM3|CCDS30781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	4	6	4	7	21	19	21	19	4	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517866129	1	115637066	A	AT	300	PASS	TSPAN2	CCDS881.1	r.?	-	-	Ins	upstream	I	115637066	115637076	1	12	266.254	-	-	9	1	1	TSPAN2|CCDS881.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TSPAN2|CCDS881.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	26	6	26	6	0	0	./.	2	3	3	3	25	29	25	29	3	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517870349	1	145455117	CACTA	C	300	PASS	POLR3GL	CCDS914.1	r.?	-	-	Del	downstream	D	145455117	145455128	4	12	267.458	-	-	2	1	1	POLR3GL|CCDS914.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	POLR3GL|CCDS914.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	5	3	24	23	24	23	5	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517872345	1	151690594	TGAGTCCCAGGGG	T	348	PASS	CELF3	CCDS1002.1	r.?	-	-	Del	upstream	D	151690594	151690607	12	49	644.428	-	-	1	1	1	CELF3|CCDS1002.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C1orf230|ENST00000326413|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	6	6	6	6	20	23	20	23	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517872825	1	153481468	C	CAAAAA	294	PASS	-	-	-	-	-	Ins	-	I	153481468	153481478	5	24	394.097	-	-	9	1	-	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	5	3	7	1	26	29	27	30	7	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517873645	1	156081885	CCTT	C	269	PASS	LMNA	CCDS1129.1	r.?	-	-	Del	upstream	D	156081885	156081892	3	12	268.662	-	-	2	1	1	LMNA|CCDS1129.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LMNA|CCDS1131.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	2	3	2	3	19	15	19	15	2	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517878150	1	171119520	TA	T	720	PASS	FMO6P	ENST00000367754	r.?	-	-	Del	intronic	D	171119520	171119524	1	48	646.235	-	-	3	1	1	FMO6P|ENST00000367754|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMO6P|ENST00000367754|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	7	5	11	7	23	15	23	15	11	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517880857	1	180716734	TA	T	720	PASS	XPR1	CCDS1340.1	r.?	-	-	Del	intronic	D	180716734	180716740	1	49	645.633	-	-	5	1	1	XPR1|CCDS1340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XPR1|CCDS1340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	6	6	10	6	22	25	22	25	10	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517881769	1	183645718	CAG	C	900	PASS	RGL1	CCDS1359.1	r.?	-	-	Del	intronic	D	183645718	183645721	2	72	807.793	-	-	1	1	1	RGL1|CCDS1359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RGL1|CCDS1359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	8	22	8	0	0	./.	8	7	12	8	34	30	34	30	12	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517888436	1	205030088	GC	G	300	PASS	CNTN2	CCDS1449.1	r.?	-	-	Del	intronic	D	205030088	205030091	1	12	269.264	-	-	2	1	1	CNTN2|CCDS1449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN2|CCDS1449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	3	2	7	5	14	16	14	16	7	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517893331	1	221799785	AT	A	840	PASS	-	-	-	-	-	Del	-	D	221799785	221799791	1	55	753.94	-	-	5	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	10	4	14	4	45	34	45	34	14	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517896123	1	231295187	A	AG	660	PASS	TRIM67	CCDS44333.1	r.?	-	-	Ins	upstream	I	231295187	231295188	1	40	571.912	-	-	0	1	-	TRIM67|CCDS44333.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TRIM67|CCDS44333.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	17	8	18	8	0	0	./.	4	7	6	9	25	20	26	20	6	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517897948	1	236681956	AT	A	360	PASS	LGALS8	CCDS1611.1	r.?	-	-	Del	upstream	D	236681956	236681966	1	16	323.117	-	-	9	1	1	LGALS8|CCDS1611.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LGALS8|CCDS1611.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	3	3	6	5	25	34	25	34	6	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517900515	1	243361612	T	TC	420	PASS	CEP170	CCDS44339.1	r.?	-	-	Ins	intronic	I	243361612	243361615	1	18	372.756	-	-	2	1	1	CEP170|CCDS44339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP170|CCDS44339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	2	5	2	5	23	29	23	29	2	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517914904	10	36073111	TTGTTTCTTTCTTTGCCTGAACATAGCCAAGCA	T	261	PASS	-	-	-	-	-	Del	-	D	36073111	36073144	32	30	484.774	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	5	3	3	15	11	16	13	4	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517920273	10	56768907	TC	T	300	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	56768907	56768911	1	12	269.72	-	-	3	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	3	3	21	21	21	21	3	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517931706	10	96110616	TACTCTAAGTATAAAATAC	T	348	PASS	NOC3L	CCDS7433.1	r.?	-	-	Del	intronic	D	96110616	96110654	18	49	648.171	-	-	2	1	1	NOC3L|CCDS7433.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOC3L|CCDS7433.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	6	6	5	6	13	20	14	20	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517933963	10	103348187	G	GT	420	PASS	POLL	CCDS7513.1	r.?	-	-	Ins	upstream	I	103348187	103348195	1	20	374.237	-	-	7	1	1	POLL|CCDS7513.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	DPCD|CCDS7514.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	13	12	0	0	./.	3	4	4	4	26	24	26	25	4	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517945752	11	7085398	CAA	C	389	PASS	NLRP14	CCDS7776.1	r.?	-	-	Del	intronic	D	7085398	7085401	2	20	378.893	-	-	2	1	1	NLRP14|CCDS7776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLRP14|CCDS7776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	4	5	6	16	20	16	20	5	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517949860	11	21071799	AC	A	300	PASS	NELL1	CCDS7855.1	r.?	-	-	Del	intronic	D	21071799	21071801	1	10	270.638	-	-	1	1	1	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NELL1|CCDS7855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	1	16	3	42	17	42	17	16	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517970419	11	93046779	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	93046779	93046786	1	25	428.204	-	-	6	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	4	4	6	6	18	22	19	22	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517979077	11	120368779	TAAACATTTAA	T	348	PASS	-	-	-	-	-	Del	-	D	120368779	120368791	10	45	649.53	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	8	4	9	5	28	19	28	20	9	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517982964	12	61641	T	TTTTA	278	PASS	-	-	-	-	-	Ins	-	I	61641	61653	4	11	514.881	-	-	2	1	1	-	-	./.	0	0	0	0	24	28	25	28	0	0	./.	10	0	10	0	105	85	105	86	10	0	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517992431	12	27816990	TTTTG	T	358	PASS	PPFIBP1	CCDS8713.1	r.?	-	-	Del	intronic	D	27816990	27816998	4	18	378.96	-	-	1	1	1	PPFIBP1|CCDS8713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPFIBP1|CCDS8713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	5	4	6	16	22	16	22	4	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2517994473	12	33670889	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	33670889	33670899	1	48	635.197	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	12	0	0	./.	7	5	9	6	28	26	28	26	9	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518001506	12	60486593	AGT	A	780	PASS	-	-	-	-	-	Del	-	D	60486593	60486596	2	54	703.784	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	8	6	9	25	30	25	30	6	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518008668	12	85603585	G	GA	540	PASS	LRRIQ1	CCDS41816.1	r.?	-	-	Ins	intronic	I	85603585	85603594	1	18	481.816	-	-	8	1	1	LRRIQ1|CCDS41816.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRIQ1|CCDS41816.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	8	1	8	4	27	25	27	25	8	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518009563	12	88854528	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	88854528	88854538	1	12	266.472	-	-	9	1	1	-	-	./.	0	0	0	0	5	16	5	17	0	0	./.	2	3	2	3	27	46	27	46	2	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518010071	12	90844517	CTTTG	C	360	PASS	-	-	-	-	-	Del	-	D	90844517	90844526	4	16	324.823	-	-	2	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	3	3	4	12	40	12	40	3	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518010233	12	91394702	ATTG	A	420	PASS	EPYC	CCDS31870.1	r.?	-	-	Del	intronic	D	91394702	91394711	3	20	378.96	-	-	2	1	1	EPYC|CCDS31870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPYC|CCDS31870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	3	4	4	7	19	27	19	27	4	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518015183	12	107874479	ATG	A	300	PASS	BTBD11	CCDS31893.1	r.?	-	-	Del	intronic	D	107874479	107874497	2	12	269.482	-	-	8	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	3	2	20	20	20	20	3	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518039584	13	66566469	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	66566469	66566479	1	12	265.198	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	3	4	21	30	21	30	3	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518054028	13	111662262	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	111662262	111662272	1	15	321.849	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	4	2	6	21	26	21	27	2	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518055446	14	20356979	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	20356979	20356986	1	56	698.028	-	-	6	1	1	-	-	./.	0	0	0	0	29	40	30	41	0	0	./.	7	6	11	9	77	64	77	65	11	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518064867	14	49682529	AT	A	480	PASS	-	-	-	-	-	Del	-	D	49682529	49682533	1	16	434.372	-	-	3	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	1	11	4	27	15	27	15	11	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518068449	14	60416003	G	GT	290	PASS	-	-	-	-	-	Ins	-	I	60416003	60416006	1	11	536.944	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	10	0	10	0	26	21	26	22	10	0	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518075856	14	85285792	G	GT	900	PASS	-	-	-	-	-	Ins	-	I	85285792	85285799	1	70	801.202	-	-	6	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	6	9	8	13	21	23	22	23	8	13	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518079167	14	96189024	TG	T	480	PASS	-	-	-	-	-	Del	-	D	96189024	96189026	1	24	434.372	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	3	5	6	6	18	18	18	18	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518086291	15	29650947	G	GA	300	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Ins	intronic	I	29650947	29650957	1	12	268.036	-	-	9	1	1	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	3	27	25	28	25	2	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518088189	15	35629885	T	TA	291	PASS	-	-	-	-	-	Ins	-	I	35629885	35629889	1	30	481.741	-	-	3	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	4	6	8	30	24	30	26	6	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518109952	16	2061638	G	GA	387	PASS	ZNF598	ENST00000431526	r.?	-	-	Ins	upstream	I	2061638	2061643	1	25	420.771	-	-	4	1	1	ZNF598|ENST00000431526|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ZNF598|ENST00000431526|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	8	7	9	7	0	0	./.	4	4	15	11	38	24	39	24	15	11	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518113156	16	8810755	GCTATT	G	356	PASS	ABAT	CCDS10534.1	r.?	-	-	Del	intronic	D	8810755	8810764	5	25	432.211	-	-	1	1	1	ABAT|CCDS10534.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABAT|CCDS10534.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	4	4	5	5	31	40	31	40	5	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518116958	16	17110360	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	17110360	17110377	2	12	271.26	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	3	31	58	31	58	3	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518137780	16	88254163	GC	G	291	PASS	-	-	-	-	-	Del	-	D	88254163	88254168	1	10	488.269	-	-	4	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	9	0	11	0	28	15	28	15	11	0	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518146388	17	28612087	GCTCTTTA	G	261	PASS	BLMH	CCDS32604.1	r.?	-	-	Del	intronic	D	28612087	28612095	7	30	489.056	-	-	1	1	1	BLMH|CCDS32604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BLMH|CCDS32604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	5	6	6	21	27	21	27	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518159772	17	70481017	GAAAGAAAGA	G	258	PASS	-	-	-	-	-	Del	-	D	70481017	70481029	9	21	434.717	-	-	1	1	-	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	6	2	6	0	30	27	30	27	6	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518162109	17	77030828	T	TA	420	PASS	C1QTNF1	CCDS11761.1	r.?	-	-	Ins	intronic	I	77030828	77030832	1	20	376.163	-	-	3	1	1	C1QTNF1|CCDS11761.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C1QTNF1|CCDS11761.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	6	10	0	0	./.	3	4	8	7	23	25	23	26	8	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518165341	18	4295769	TAAGTA	T	449	PASS	-	-	-	-	-	Del	-	D	4295769	4295779	5	25	434.747	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	4	6	21	27	21	27	4	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518169064	18	18593858	T	TA	480	PASS	ROCK1	CCDS11870.2	r.?	-	-	Ins	intronic	I	18593858	18593867	1	24	422.104	-	-	8	1	1	ROCK1|CCDS11870.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROCK1|CCDS11870.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	3	8	3	23	21	23	21	8	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518181756	18	63621928	CTGGGGCTGGGGACC	CCCAG	261	PASS	-	-	-	-	-	Complex	-	DI	63621929	63621942	14	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	6	0	0	15	16	15	16	3	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518186512	18	77828400	AT	A	360	PASS	-	-	-	-	-	Del	-	D	77828400	77828403	1	16	326.06	-	-	2	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	3	7	3	12	24	12	24	7	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518203197	19	49293216	GT	G	300	PASS	-	-	-	-	-	Del	-	D	49293216	49293218	1	6	263.435	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	0	5	0	11	11	11	11	5	0	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518215862	2	32447217	G	GTTA	389	PASS	SLC30A6	CCDS1780.1	r.2858_2859insuua	c.?	p.?	Ins	3'UTR variant	I	32447217	32447223	3	20	364.763	-	-	1	1	1	SLC30A6|CCDS1780.1|r.2858_2859insuua|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SLC30A6|CCDS1780.1|r.2858_2859insuua|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	14	13	15	0	0	./.	4	3	4	4	23	23	23	23	4	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518219356	2	43452021	AG	A	389	PASS	ZFP36L2	CCDS1811.1	r.1215delC	c.921delC	p.S308fs*153	Del	frameshift	D	43452021	43452024	1	20	368.376	-	-	2	1	1	ZFP36L2|CCDS1811.1|r.1215delC|c.921delC|p.S308fs*153|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZFP36L2|CCDS1811.1|r.1215delC|c.921delC|p.S308fs*153|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	7	5	19	17	19	17	7	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518224792	2	64416273	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	64416273	64416278	1	24	426.505	-	-	4	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	5	3	6	5	18	19	19	19	6	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518236669	2	112390571	C	CGT	360	PASS	-	-	-	-	-	Ins	-	I	112390571	112390589	2	12	314.461	-	-	8	1	1	-	-	./.	0	0	0	0	6	14	6	15	0	0	./.	1	5	3	8	15	27	16	27	3	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518254762	2	176150282	AG	A	360	PASS	-	-	-	-	-	Del	-	D	176150282	176150284	1	16	323.491	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	3	5	6	27	20	27	20	5	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518262871	2	205665069	GA	G	420	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	205665069	205665077	1	14	376.805	-	-	7	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	1	6	1	8	14	19	14	19	1	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518263581	2	208263981	TC	T	300	PASS	-	-	-	-	-	Del	-	D	208263981	208263984	1	10	269.576	-	-	2	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	1	4	1	5	31	25	31	25	1	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518278403	20	14848038	CT	C	300	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14848038	14848042	1	10	272.29	-	-	3	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	2	4	17	32	17	32	2	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518280050	20	19919061	GT	G	420	PASS	RIN2	ENST00000255006	r.?	-	-	Del	intronic	D	19919061	19919063	1	20	380.002	-	-	1	1	1	RIN2|ENST00000255006|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIN2|ENST00000255006|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	4	3	9	16	22	16	22	3	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518280359	20	21160180	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	21160180	21160189	1	36	591.813	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	8	3	11	4	33	23	33	23	11	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518282612	20	29592075	GT	G	313	PASS	-	-	-	-	-	Del	-	D	29592075	29592077	1	12	599.038	-	-	1	1	1	-	-	./.	0	0	0	0	79	41	79	41	0	0	./.	11	0	11	1	153	97	153	97	11	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518284212	20	33081045	CAG	C	360	PASS	ITCH	CCDS13234.1	r.?	-	-	Del	intronic	D	33081045	33081052	2	15	326.748	-	-	3	1	1	ITCH|CCDS13234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITCH|CCDS13234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	3	8	20	36	20	36	3	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518286477	20	42427701	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	42427701	42427711	1	10	267.474	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	1	4	1	4	15	27	15	27	1	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518292301	20	60684068	G	GAGTAC	478	PASS	-	-	-	-	-	Ins	-	I	60684068	60684075	5	30	463.029	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	5	5	5	25	24	25	24	5	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518294026	21	9939719	AT	A	264	PASS	ENSG00000227328	ENST00000416067	r.?	-	-	Del	intronic	D	9939719	9939728	1	30	490.227	-	-	8	1	1	ENSG00000227328|ENST00000416067|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227328|ENST00000416067|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	77	31	77	31	0	0	./.	4	5	6	5	178	55	178	55	6	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518311907	22	25530343	ATG	A	300	PASS	KIAA1671	CCDS46676.1	r.?	-	-	Del	intronic	D	25530343	25530361	2	12	271.12	-	-	8	1	1	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	3	3	3	21	26	21	26	3	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518313976	22	32061078	GATAAGGATATTTGCTCA	G	327	PASS	PISD	ENST00000439502	r.?	-	-	Del	upstream	D	32061078	32061096	17	40	556.608	-	-	1	1	1	PISD|ENST00000439502|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000251232|ENST00000422296|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	7	4	6	4	23	18	24	18	7	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518317772	22	43395454	TCACCTGAGGTTGGGAATTCAAGA	T	377	PASS	PACSIN2	CCDS43023.1	r.?	-	-	Del	intronic	D	43395454	43395479	23	26	709.97	-	-	1	1	1	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PACSIN2|CCDS43023.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	12	1	12	1	30	11	30	11	12	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518318686	22	46227264	AT	A	420	PASS	ATXN10	CCDS14070.1	r.?	-	-	Del	intronic	D	46227264	46227269	1	20	373.909	-	-	4	1	1	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN10|CCDS14070.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	5	6	29	28	29	28	5	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518321707	3	4858237	AT	A	600	PASS	ITPR1	CCDS46740.1	r.?	-	-	Del	intronic	D	4858237	4858244	1	32	539.544	-	-	6	1	1	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	3	7	7	9	24	21	24	21	7	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518336481	3	61294262	GCCTT	G	749	PASS	-	-	-	-	-	Del	-	D	61294262	61294267	4	56	701.587	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	7	6	8	8	16	21	16	21	8	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518343563	3	82894443	G	GA	410	PASS	-	-	-	-	-	Ins	-	I	82894443	82894453	1	25	423.688	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	16	14	0	0	./.	4	4	6	6	23	29	23	30	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518348727	3	103995705	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	103995705	103995713	1	20	373.888	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	6	7	23	26	23	26	6	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518356938	3	133253717	TA	T	300	PASS	-	-	-	-	-	Del	-	D	133253717	133253723	1	10	269.471	-	-	5	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	1	6	1	21	19	21	19	6	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518363451	3	157670552	GA	G	360	PASS	-	-	-	-	-	Del	-	D	157670552	157670556	1	16	324.087	-	-	3	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	5	3	16	22	16	22	5	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518378896	4	12255334	GA	G	840	PASS	-	-	-	-	-	Del	-	D	12255334	12255338	1	63	752.881	-	-	3	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	8	9	11	25	28	25	28	9	11	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518385028	4	31608804	CA	C	360	PASS	-	-	-	-	-	Del	-	D	31608804	31608806	1	15	322.835	-	-	1	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	4	5	7	30	24	30	24	5	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518395652	4	65080708	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	65080708	65080718	1	18	369.517	-	-	9	1	-	-	-	./.	0	0	0	0	12	21	12	22	0	0	./.	2	5	4	8	30	28	30	30	4	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518409136	4	108994643	C	CA	269	PASS	LEF1	CCDS3679.1	r.?	-	-	Ins	intronic	I	108994643	108994652	1	10	265.919	-	-	8	1	1	LEF1|CCDS3679.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LEF1|CCDS3679.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	4	1	4	2	31	32	31	33	4	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518410365	4	113065425	AATGG	A	569	PASS	C4orf32	CCDS3695.1	r.?	-	-	Del	upstream	D	113065425	113065435	4	35	539.062	-	-	2	1	1	C4orf32|CCDS3695.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C4orf32|CCDS3695.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	12	10	12	0	0	./.	6	4	6	5	22	29	22	29	6	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518411702	4	117302991	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	117302991	117303001	1	12	265.317	-	-	9	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	3	2	3	2	40	37	40	38	3	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518422201	4	150439659	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	150439659	150439668	1	54	692.954	-	-	8	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	8	5	9	9	24	37	25	37	9	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518426183	4	162444084	AT	A	300	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162444084	162444090	1	12	265.919	-	-	5	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	3	2	3	2	32	27	32	27	3	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518432125	4	179523051	C	CACAG	329	PASS	-	-	-	-	-	Ins	-	I	179523051	179523055	4	16	301.763	-	-	0	1	-	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	3	3	4	3	11	13	11	13	4	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518440000	5	7186945	AT	A	360	PASS	-	-	-	-	-	Del	-	D	7186945	7186955	1	15	324.219	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	2	6	3	8	6	8	6	6	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518440414	5	8323244	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	8323244	8323252	1	12	265.366	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	5	2	28	18	28	18	5	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518446278	5	26631993	AC	A	360	PASS	-	-	-	-	-	Del	-	D	26631993	26631995	1	16	324.219	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	3	3	4	4	18	21	18	21	4	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518446287	5	26664249	CCAAA	C	387	PASS	-	-	-	-	-	Del	-	D	26664249	26664256	4	21	432.292	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	6	3	8	23	29	23	29	3	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518446972	5	28805139	CATGGACACAGGGAGGGGAACCACACACACAGGGGCCTGTCAGGGGGTGGGGGGCTAGGGGAGGGATAGCATTAGGAGAAATACCTAATGTAGATGACGGGTTAATGGGTGCAGCAAACCACCATGGCACGTGTATACCTATGTAACAAACCTGCACATTCTGCACATGTACCTCAGAACTTAAAGTATAATCATAATTAAAAAAAGATAAGATGTCTTTAAAGAAAAATATGATGGTACTTTATTATTACATTGAACTTGA	C	262	PASS	-	-	-	-	-	Del	-	D	28805139	28805403	261	32	539.16	-	-	1	1	1	-	-	./.	0	0	0	0	6	4	6	4	0	0	./.	7	3	0	0	17	10	24	13	7	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518447756	5	30951297	GT	G	259	PASS	-	-	-	-	-	Del	-	D	30951297	30951304	1	20	377.653	-	-	6	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	3	8	6	27	30	27	30	8	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518454349	5	56160715	GAGGAGACAGCCCAGACAAT	G	435	PASS	MAP3K1	CCDS43318.1	r.990_1008del19	c.990_1008del19	p.G331fs*25	Del	frameshift	D	56160715	56160736	19	70	808.741	-	-	1	1	1	MAP3K1|CCDS43318.1|r.990_1008del19|c.990_1008del19|p.G331fs*25|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MAP3K1|CCDS43318.1|r.990_1008del19|c.990_1008del19|p.G331fs*25|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	7	9	7	0	0	./.	9	6	9	5	19	14	19	15	9	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518454351	5	56168749	CAA	C	360	PASS	MAP3K1	CCDS43318.1	r.1604_1605delAA	c.1604_1605delAA	p.Q535fs*5	Del	frameshift	D	56168749	56168752	2	12	324.219	-	-	2	1	1	MAP3K1|CCDS43318.1|r.1604_1605delAA|c.1604_1605delAA|p.Q535fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MAP3K1|CCDS43318.1|r.1604_1605delAA|c.1604_1605delAA|p.Q535fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	9	14	9	0	0	./.	5	1	6	1	20	16	20	16	6	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518463414	5	88097647	CT	C	629	PASS	MEF2C	CCDS47244.1	r.?	-	-	Del	intronic	D	88097647	88097649	1	42	594.401	-	-	1	1	1	MEF2C|CCDS47244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEF2C|CCDS47244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	5	6	5	11	21	31	21	31	5	11	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518464180	5	91747163	T	TGA	300	PASS	-	-	-	-	-	Ins	-	I	91747163	91747182	2	10	260.549	-	-	9	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	1	0	32	28	32	28	5	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518470409	5	115178083	TC	T	420	PASS	ATG12	CCDS4122.1	r.?	-	-	Del	upstream	D	115178083	115178087	1	18	374.643	-	-	3	1	1	ATG12|CCDS4122.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AP3S1|CCDS4123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	2	6	4	27	16	27	16	6	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518470859	5	116528066	ATCTGTGTACATAATTC	A	261	PASS	-	-	-	-	-	Del	-	D	116528066	116528103	16	30	486.328	-	-	2	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	4	5	4	19	14	19	14	5	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518476169	5	136231599	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	136231599	136231601	1	42	587.778	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	5	8	7	21	28	21	28	8	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518492407	6	10132420	T	TA	540	PASS	OFCC1	ENST00000481704	r.?	-	-	Ins	intronic	I	10132420	10132430	1	28	481.055	-	-	9	1	1	OFCC1|ENST00000481704|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OFCC1|ENST00000481704|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	6	4	7	17	23	17	23	4	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518494432	6	16593106	T	TG	300	PASS	ATXN1	CCDS34342.1	r.?	-	-	Ins	intronic	I	16593106	16593113	1	6	264.242	-	-	6	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	0	6	0	13	5	13	5	6	0	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518497410	6	25330112	GT	G	360	PASS	LRRC16A	ENST00000329474	r.?	-	-	Del	intronic	D	25330112	25330115	1	15	324.316	-	-	2	1	1	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	15	2	15	0	0	./.	4	2	5	2	21	20	21	20	5	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518511189	6	68835297	CT	C	420	PASS	-	-	-	-	-	Del	-	D	68835297	68835299	1	14	378.368	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	6	1	6	3	26	19	26	19	6	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518513810	6	78199399	C	CA	256	PASS	-	-	-	-	-	Ins	-	I	78199399	78199406	1	30	476.238	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	5	6	7	20	22	21	23	6	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518516397	6	89026067	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	89026067	89026077	1	10	248.589	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	4	1	23	27	23	27	4	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518518263	6	96170584	GT	G	360	PASS	-	-	-	-	-	Del	-	D	96170584	96170592	1	16	324.316	-	-	7	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	3	6	5	24	24	24	24	6	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518529905	6	140157478	C	CTA	300	PASS	-	-	-	-	-	Ins	-	I	140157478	140157484	2	12	264.242	-	-	2	1	-	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	0	1	23	24	23	24	2	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518542949	7	12767798	TTGGAGCCC	T	406	PASS	-	-	-	-	-	Del	-	D	12767798	12767809	8	55	755.411	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	10	4	11	6	37	22	37	22	11	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518543398	7	14188419	C	CT	420	PASS	DGKB	CCDS47547.1	r.2938_2939insa	c.?	p.?	Ins	3'UTR variant	I	14188419	14188425	1	20	374.093	-	-	5	1	1	DGKB|CCDS47547.1|r.2938_2939insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	DGKB|CCDS47547.1|r.2938_2939insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	14	11	14	0	0	./.	4	3	9	5	22	21	22	21	9	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518544847	7	18949529	G	GT	300	PASS	HDAC9	CCDS47554.1	r.?	-	-	Ins	intronic	I	18949529	18949538	1	10	266.607	-	-	8	1	1	HDAC9|CCDS47554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDAC9|CCDS47554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	4	1	4	1	42	22	42	22	4	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518545237	7	20498602	CACAA	C	538	PASS	-	-	-	-	-	Del	-	D	20498602	20498612	4	20	538.031	-	-	2	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	1	9	2	10	18	31	18	31	2	10	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518553338	7	47104619	GTC	G	269	PASS	-	-	-	-	-	Del	-	D	47104619	47104638	2	10	269.618	-	-	9	1	-	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	4	2	3	16	20	16	20	2	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518561711	7	71735077	C	CGT	360	PASS	CALN1	CCDS47603.1	r.?	-	-	Ins	intronic	I	71735077	71735094	2	16	317.039	-	-	8	1	-	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	3	9	11	28	28	28	28	9	11	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518567808	7	92430714	GCT	G	300	PASS	CDK6	CCDS5628.1	r.?	-	-	Del	intronic	D	92430714	92430731	2	10	263.597	-	-	8	1	1	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDK6|CCDS5628.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	4	1	4	1	18	22	18	22	4	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518575955	7	121526430	T	TA	540	PASS	PTPRZ1	CCDS34740.1	r.?	-	-	Ins	intronic	I	121526430	121526432	1	18	479.773	-	-	1	1	1	PTPRZ1|CCDS34740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRZ1|CCDS34740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	8	1	9	23	27	24	27	1	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518576777	7	124390345	CT	C	540	PASS	GPR37	CCDS5792.1	r.?	-	-	Del	intronic	D	124390345	124390349	1	28	486.395	-	-	3	1	1	GPR37|CCDS5792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR37|CCDS5792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	6	3	7	5	28	25	28	25	7	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518577124	7	125532837	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	125532837	125532846	1	12	267.209	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	3	3	24	30	25	30	3	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518598447	8	37907946	AG	A	1466	PASS	EIF4EBP1	CCDS6100.1	r.?	-	-	Del	intronic	D	37907946	37907948	1	152	1347.31	-	-	1	1	1	EIF4EBP1|CCDS6100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF4EBP1|CCDS6100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	18	7	22	11	43	21	43	21	22	11	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518601223	8	47664581	G	GT	314	PASS	-	-	-	-	-	Ins	-	I	47664581	47664591	1	16	316.708	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	3	4	53	54	53	54	4	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518603375	8	53937063	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	53937063	53937078	2	10	269.944	-	-	7	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	1	7	1	55	46	55	46	7	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518605900	8	61119838	AT	A	2429	PASS	CA8	CCDS6174.1	r.?	-	-	Del	intronic	D	61119838	61119843	1	462	2212.34	-	-	4	1	1	CA8|CCDS6174.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	CA8|CCDS6174.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	21	20	28	27	41	53	41	53	28	27	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518607509	8	66026710	AC	A	420	PASS	-	-	-	-	-	Del	-	D	66026710	66026712	1	14	377.32	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	6	2	9	46	55	46	55	2	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518609206	8	70419963	C	CA	300	PASS	SULF1	CCDS6204.1	r.?	-	-	Ins	intronic	I	70419963	70419972	1	6	265.128	-	-	8	1	1	SULF1|CCDS6204.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SULF1|CCDS6204.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	0	5	2	7	42	51	42	51	2	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518616381	8	89482596	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	89482596	89482604	1	20	373.707	-	-	7	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	9	6	56	42	56	42	9	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518616974	8	91137052	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	91137052	91137053	1	10	266.332	-	-	0	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	4	2	42	46	43	46	4	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518617981	8	94156298	C	CA	1589	PASS	-	-	-	-	-	Ins	-	I	94156298	94156308	1	180	1414.95	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	11	11	0	0	./.	8	19	13	26	46	52	46	53	13	26	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518621219	8	101852341	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	101852341	101852359	2	12	269.944	-	-	8	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	3	2	28	56	28	56	3	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518622710	8	105458960	TA	T	300	PASS	DPYS	CCDS6302.1	r.?	-	-	Del	intronic	D	105458960	105458970	1	12	268.74	-	-	9	1	1	DPYS|CCDS6302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYS|CCDS6302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	3	3	4	37	56	37	56	3	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518623146	8	106587906	G	GA	840	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Ins	intronic	I	106587906	106587915	1	60	746.813	-	-	8	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	9	5	12	8	61	57	62	57	12	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518623964	8	108809385	GGA	G	360	PASS	-	-	-	-	-	Del	-	D	108809385	108809404	2	15	323.933	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	4	2	49	41	49	41	4	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518626302	8	115161894	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	115161894	115161901	1	24	425.89	-	-	6	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	5	5	6	45	60	47	61	5	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518626786	8	116632454	AAAAC	A	300	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116632454	116632465	4	12	269.342	-	-	2	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	4	52	62	52	62	2	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518626790	8	116646096	TG	T	1440	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116646096	116646099	1	153	1289.11	-	-	2	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	8	16	11	18	45	52	45	52	11	18	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518628189	8	120271262	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	120271262	120271279	2	12	268.74	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	3	2	36	52	36	52	3	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518628864	8	122123629	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	122123629	122123639	1	15	320.321	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	2	4	3	57	51	57	51	4	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518633112	8	132582630	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	132582630	132582640	1	12	318.514	-	-	9	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	1	5	1	50	55	50	55	5	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518636010	8	140992150	ACCCTCTAAATGCGGTGT	A	551	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	140992150	140992172	17	80	1021.57	-	-	1	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	15	4	13	28	47	28	49	4	15	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518654369	9	76495128	AT	A	720	PASS	-	-	-	-	-	Del	-	D	76495128	76495132	1	49	650.647	-	-	3	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	6	10	7	29	20	29	20	10	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518655594	9	80328514	AAC	A	300	PASS	GNAQ	CCDS6658.1	r.?	-	-	Del	downstream	D	80328514	80328533	2	12	271.103	-	-	9	1	-	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	3	15	37	15	37	2	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518657056	9	85934337	ATTAT	A	540	PASS	FRMD3	CCDS43840.1	r.?	-	-	Del	intronic	D	85934337	85934357	4	28	486.781	-	-	4	1	1	FRMD3|CCDS43840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD3|CCDS43840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	6	6	11	28	24	28	24	6	11	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518659374	9	94574845	A	AC	269	PASS	ROR2	CCDS6691.1	r.?	-	-	Ins	intronic	I	94574845	94574854	1	12	247.623	-	-	8	1	1	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	4	3	10	12	10	12	4	3	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518666533	9	120262555	AATAATC	A	261	PASS	-	-	-	-	-	Del	-	D	120262555	120262563	6	30	487.986	-	-	1	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	4	5	4	5	28	20	28	20	4	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518668632	9	128545123	G	GT	720	PASS	PBX3	CCDS6865.1	r.?	-	-	Ins	intronic	I	128545123	128545133	1	40	628.371	-	-	9	1	1	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	9	3	12	6	33	25	33	25	12	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518673852	X	8567893	AAAAC	A	360	PASS	KAL1	CCDS14130.1	r.?	-	-	Del	intronic	D	8567893	8567917	4	12	324.748	-	-	5	1	-	KAL1|CCDS14130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KAL1|CCDS14130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	1	6	1	28	19	28	19	6	1	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518675953	X	17752059	G	GA	300	PASS	NHS	CCDS14181.1	r.6706_6707insa	c.?	p.?	Ins	3'UTR variant	I	17752059	17752069	1	10	266.309	-	-	9	1	1	NHS|CCDS14181.1|r.6706_6707insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	NHS|CCDS14181.1|r.6706_6707insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	16	6	16	6	0	0	./.	4	1	4	2	33	28	33	28	4	2	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518677778	X	26703020	G	GAGAT	598	PASS	-	-	-	-	-	Ins	-	I	26703020	26703022	4	42	568.781	-	-	0	1	-	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	6	5	7	5	25	22	25	22	7	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518680325	X	39823834	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	39823834	39823835	1	14	375.361	-	-	0	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	1	6	3	6	22	23	22	23	3	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518682991	X	51876757	GAGAC	G	538	PASS	-	-	-	-	-	Del	-	D	51876757	51876767	4	36	536.832	-	-	2	1	1	-	-	./.	0	0	0	0	3	9	3	9	0	0	./.	5	5	6	6	16	24	16	24	6	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518687506	X	78801287	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	78801287	78801295	1	90	910.989	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	9	8	13	8	35	19	35	19	13	8	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518689888	X	88736334	G	GA	383	PASS	-	-	-	-	-	Ins	-	I	88736334	88736339	1	20	375.361	-	-	4	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	7	9	21	28	21	28	7	9	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518691379	X	94810924	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	94810924	94810934	1	15	321.136	-	-	9	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	2	4	2	5	27	22	28	22	2	5	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518693120	X	102103641	T	TTC	540	PASS	-	-	-	-	-	Ins	-	I	102103641	102103643	2	30	476.587	-	-	0	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	4	7	6	24	20	25	21	7	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518693855	X	105894451	T	TA	840	PASS	CXorf57	CCDS14519.1	r.?	-	-	Ins	intronic	I	105894451	105894460	1	63	748.916	-	-	8	1	1	CXorf57|CCDS14519.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CXorf57|CCDS14519.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	14	14	0	0	./.	6	8	6	12	17	31	17	31	6	12	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518697963	X	124532405	CGAA	C	418	PASS	-	-	-	-	-	Del	-	D	124532405	124532417	3	21	433.801	-	-	3	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	6	4	7	14	24	14	24	4	7	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518699608	X	132006074	A	AG	480	PASS	HS6ST2	CCDS48169.1	r.?	-	-	Ins	intronic	I	132006074	132006080	1	24	428.382	-	-	5	1	1	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	10	0	0	./.	5	3	9	6	25	17	25	17	9	6	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518699790	X	133011765	T	TA	360	PASS	GPC3	CCDS14638.1	r.?	-	-	Ins	intronic	I	133011765	133011773	1	16	321.738	-	-	7	1	1	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC3|CCDS14638.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	3	3	4	4	27	26	27	26	4	4	1	1	1	1	1	1	1	1
2288390	PD17976a	PD17976b	2518702324	X	143948441	AT	A	437	PASS	-	-	-	-	-	Del	-	D	143948441	143948449	1	30	488.026	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	4	5	4	32	24	32	24	5	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707746169	1	2560975	C	CAGGGGAG	377	PASS	MMEL1	CCDS30569.1	r.?	-	-	Ins	intronic	I	2560975	2560995	7	54	639.13	-	-	2	1	1	MMEL1|CCDS30569.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MMEL1|CCDS30569.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	5	8	5	10	15	23	15	23	5	10	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707749344	1	14482131	TTTC	T	300	PASS	C1orf196	ENST00000412667	r.?	-	-	Del	intronic	D	14482131	14482158	3	6	269.207	-	-	8	1	-	C1orf196|ENST00000412667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf196|ENST00000412667|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	0	5	1	5	32	25	32	25	1	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707763509	1	69229024	C	CA	517	PASS	-	-	-	-	-	Ins	-	I	69229024	69229030	1	24	479.154	-	-	5	1	1	-	-	./.	0	0	0	0	11	18	11	19	0	0	./.	7	2	7	5	24	31	24	32	7	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707765290	1	76568792	T	TG	300	PASS	ST6GALNAC3	CCDS672.1	r.?	-	-	Ins	intronic	I	76568792	76568793	1	10	263.187	-	-	0	1	1	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	6	4	32	21	33	21	6	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707788192	1	173409587	G	GA	300	PASS	AL022310.2	ENST00000421168	r.?	-	-	Ins	intronic	I	173409587	173409597	1	12	259.574	-	-	9	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	10	0	0	./.	3	2	3	2	46	29	46	29	3	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707801080	1	214829821	G	GT	360	PASS	CENPF	CCDS31023.1	r.?	-	-	Ins	intronic	I	214829821	214829829	1	15	318.232	-	-	7	1	1	CENPF|CCDS31023.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CENPF|CCDS31023.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	19	0	0	./.	2	4	3	5	34	32	35	33	3	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707801625	1	216700740	AC	A	840	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	216700740	216700743	1	55	753.78	-	-	2	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	10	4	13	6	46	37	46	37	13	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707808396	1	238049360	AG	A	720	PASS	ZP4	CCDS1615.1	r.?	-	-	Del	intronic	D	238049360	238049363	1	48	646.097	-	-	2	1	1	ZP4|CCDS1615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZP4|CCDS1615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	7	5	8	7	28	33	28	33	8	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707818167	10	16602296	CT	C	420	PASS	-	-	-	-	-	Del	-	D	16602296	16602302	1	20	378.337	-	-	5	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	3	6	3	22	23	22	23	6	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707825627	10	42534638	GT	G	284	PASS	-	-	-	-	-	Del	-	D	42534638	42534643	1	12	594.53	-	-	4	1	1	-	-	./.	0	0	0	0	76	1	76	1	0	0	./.	11	0	13	0	301	4	301	4	13	0	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707836785	10	82829581	T	TGA	300	PASS	-	-	-	-	-	Ins	-	I	82829581	82829588	2	12	263.016	-	-	3	1	1	-	-	./.	0	0	0	0	8	16	8	18	0	0	./.	2	3	6	6	20	23	21	23	6	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707837382	10	85518919	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	85518919	85518928	1	18	371.112	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	5	6	7	16	32	16	32	6	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707843122	10	107484291	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	107484291	107484300	1	15	320.677	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	4	2	5	3	26	27	26	27	5	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707846496	10	120455832	T	TA	300	PASS	C10orf46	CCDS41570.1	r.?	-	-	Ins	intronic	I	120455832	120455842	1	12	267.23	-	-	9	1	1	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	2	23	28	23	28	3	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707849688	10	130807987	GA	G	300	PASS	-	-	-	-	-	Del	-	D	130807987	130807996	1	10	269.037	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	5	5	13	27	13	27	5	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707853218	11	7581258	TC	T	660	PASS	PPFIBP2	CCDS31419.1	r.?	-	-	Del	intronic	D	7581258	7581264	1	36	595.719	-	-	5	1	1	PPFIBP2|CCDS31419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPFIBP2|CCDS31419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	8	3	12	8	30	18	30	18	12	8	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707863133	11	40655057	G	GC	540	PASS	-	-	-	-	-	Ins	-	I	40655057	40655064	1	30	478.376	-	-	6	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	4	5	5	6	18	29	18	29	5	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707863335	11	41357792	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	41357792	41357802	1	12	267.771	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	5	6	26	26	26	26	5	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707865712	11	49083432	A	AT	300	PASS	TRIM64C	ENST00000340070	r.?	-	-	Ins	upstream	I	49083432	49083433	1	6	265.965	-	-	0	1	1	TRIM64C|ENST00000340070|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TRIM64C|ENST00000340070|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	13	9	13	0	0	./.	0	5	2	7	21	26	21	26	2	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707900792	12	48265144	TTC	T	360	PASS	VDR	CCDS8757.1	r.?	-	-	Del	intronic	D	48265144	48265162	2	15	324.851	-	-	8	1	-	VDR|CCDS8757.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VDR|CCDS8757.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	4	2	3	2	14	27	14	27	4	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707910984	12	85940615	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	85940615	85940634	2	12	270.709	-	-	9	1	-	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	3	2	33	25	33	25	3	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707912788	12	93016076	GGTGA	G	478	PASS	-	-	-	-	-	Del	-	D	93016076	93016083	4	24	487.277	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	2	7	3	10	19	30	19	30	3	10	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707935376	13	58443462	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	58443462	58443469	1	20	376	-	-	6	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	3	4	6	9	28	32	28	32	6	9	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707937557	13	65567886	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	65567886	65567904	2	12	271.581	-	-	8	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	3	21	19	21	19	2	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707954522	14	31595825	CA	C	300	PASS	HECTD1	CCDS41939.1	r.?	-	-	Del	intronic	D	31595825	31595835	1	10	268.577	-	-	9	1	1	HECTD1|CCDS41939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HECTD1|CCDS41939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	26	7	26	0	0	./.	1	4	2	4	23	40	23	40	2	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707959495	14	48313760	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	48313760	48313764	1	12	268.577	-	-	3	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	3	2	5	2	27	21	27	21	5	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707968655	14	80799133	AAG	A	300	PASS	AC010849.1	ENST00000504475	r.?	-	-	Del	intronic	D	80799133	80799152	2	12	270.986	-	-	9	1	1	AC010849.1|ENST00000504475|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC010849.1|ENST00000504475|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	3	2	0	1	32	19	32	19	3	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707968909	14	81557091	TCA	T	300	PASS	TSHR	CCDS9872.1	r.?	-	-	Del	intronic	D	81557091	81557109	2	12	269.18	-	-	8	1	1	TSHR|CCDS9872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHR|CCDS9872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	5	2	27	16	27	16	5	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707970316	14	86697760	CT	C	480	PASS	-	-	-	-	-	Del	-	D	86697760	86697762	1	25	434.54	-	-	1	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	4	4	6	4	26	23	26	23	6	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2707986293	15	54277159	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	54277159	54277169	1	24	428.778	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	5	4	6	23	37	23	38	4	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708001712	16	7356875	AG	A	540	PASS	-	-	-	-	-	Del	-	D	7356875	7356877	1	28	489.16	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	3	8	5	33	19	33	19	8	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708006014	16	22640718	G	GT	300	PASS	ENSG00000224154	ENST00000430965	r.?	-	-	Ins	intronic	I	22640718	22640728	1	12	267.541	-	-	9	1	1	ENSG00000224154|ENST00000430965|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000224154|ENST00000430965|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	11	27	12	0	0	./.	3	2	3	4	59	54	60	54	3	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708009726	16	33534938	CTCA	CCG	254	PASS	-	-	-	-	-	Complex	-	DI	33534939	33534941	3	21	0	-	-	0	1	1	-	-	./.	0	0	0	0	34	30	34	30	0	0	./.	6	2	0	0	64	65	64	65	6	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708024159	17	7128427	CCA	C	389	PASS	ACADVL	CCDS11090.1	r.2131_2132delCA	c.?	p.?	Del	3'UTR variant	D	7128427	7128430	2	18	379.081	-	-	1	1	1	ACADVL|CCDS11090.1|r.2131_2132delCA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ACADVL|CCDS11090.1|r.2131_2132delCA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	5	11	5	0	0	./.	2	5	4	5	15	12	15	12	4	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708036780	17	50927613	A	AC	329	PASS	-	-	-	-	-	Ins	-	I	50927613	50927620	1	12	322.346	-	-	6	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	5	3	5	27	30	27	30	3	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708042334	17	70057480	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	70057480	70057489	1	20	376.071	-	-	8	1	1	-	-	./.	0	0	0	0	21	6	22	6	0	0	./.	3	4	3	5	36	16	36	16	3	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708055647	18	37127361	CTTT	C	567	PASS	AC105201.1	ENST00000510201	r.?	-	-	Del	intronic	D	37127361	37127365	3	42	597.788	-	-	3	1	1	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	6	5	7	8	30	23	30	23	7	8	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708056757	18	41432469	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	41432469	41432486	2	12	271.722	-	-	8	1	-	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	4	25	33	25	33	2	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708072795	19	18720399	T	TA	300	PASS	CRLF1	CCDS32962.1	r.?	-	-	Ins	upstream	I	18720399	18720400	1	10	266.102	-	-	0	1	1	CRLF1|CCDS32962.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CRLF1|CCDS32962.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	4	2	16	12	16	12	4	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708074209	19	22569059	C	CT	365	PASS	ZNF98	CCDS46031.1	r.?	-	-	Ins	downstream	I	22569059	22569066	1	24	429.375	-	-	6	1	1	ZNF98|CCDS46031.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF98|CCDS46031.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	8	7	8	0	0	./.	5	3	5	4	22	29	22	29	5	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708096950	2	42918507	TAC	T	300	PASS	MTA3	CCDS46267.1	r.?	-	-	Del	intronic	D	42918507	42918525	2	10	269.418	-	-	8	1	1	MTA3|CCDS46267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTA3|CCDS46267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	4	1	4	3	29	15	29	15	4	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708102208	2	63411047	GTC	G	360	PASS	C2orf86	CCDS42688.1	r.?	-	-	Del	intronic	D	63411047	63411051	2	16	322.7	-	-	1	1	1	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	11	22	11	0	0	./.	3	3	4	4	23	23	23	23	4	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708106508	2	80272738	CATCATAAATTCTTGAG	C	261	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80272738	80272755	16	28	483.147	-	-	1	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	6	3	5	3	22	21	23	21	6	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708110933	2	99204195	CA	C	300	PASS	INPP4A	CCDS46369.1	r.3452delA	c.?	p.?	Del	3'UTR variant	D	99204195	99204197	1	12	267.612	-	-	1	1	1	INPP4A|CCDS46369.1|r.3452delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	INPP4A|CCDS46369.1|r.3452delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	10	5	28	22	28	22	10	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708113393	2	109248020	TC	T	300	PASS	LIMS1	CCDS2078.1	r.?	-	-	Del	intronic	D	109248020	109248022	1	6	259.183	-	-	1	1	1	LIMS1|CCDS2078.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LIMS1|CCDS2078.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	0	6	0	25	24	25	24	6	0	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708121841	2	139386817	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	139386817	139386824	1	30	479.534	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	4	7	5	27	29	27	29	7	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708124772	2	149904078	AGT	A	300	PASS	LYPD6B	CCDS46423.1	r.?	-	-	Del	intronic	D	149904078	149904097	2	10	269.418	-	-	9	1	-	LYPD6B|CCDS46423.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LYPD6B|CCDS46423.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	5	1	33	17	33	17	5	1	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708126119	2	154561170	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	154561170	154561176	1	40	639.379	-	-	5	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	3	9	7	10	26	28	26	28	7	10	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708131998	2	175050748	GAGACA	G	300	PASS	OLA1	CCDS2255.1	r.?	-	-	Del	intronic	D	175050748	175050759	5	10	269.418	-	-	2	1	1	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	4	1	7	1	29	16	29	16	7	1	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708137466	2	195620683	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	195620683	195620692	1	63	745.942	-	-	8	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	6	8	10	10	44	33	45	33	10	10	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708142828	2	215355439	AC	A	569	PASS	VWC2L	CCDS46509.1	r.?	-	-	Del	intronic	D	215355439	215355441	1	32	534.622	-	-	1	1	1	VWC2L|CCDS46509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VWC2L|CCDS46509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	7	3	11	5	28	19	28	19	11	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708162700	20	45197802	G	GT	480	PASS	SLC13A3	CCDS42886.1	r.?	-	-	Ins	intronic	I	45197802	45197812	1	24	428.639	-	-	9	1	1	SLC13A3|CCDS42886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC13A3|CCDS42886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	5	4	5	20	27	20	27	4	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708165306	20	53948098	GA	G	720	PASS	-	-	-	-	-	Del	-	D	53948098	53948107	1	49	651.387	-	-	8	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	6	6	8	6	34	33	34	33	8	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708195536	3	9695485	T	TG	300	PASS	MTMR14	CCDS43043.1	r.?	-	-	Ins	intronic	I	9695485	9695490	1	10	257.247	-	-	4	1	1	MTMR14|CCDS43043.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTMR14|CCDS43043.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	4	2	21	21	22	22	4	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708198071	3	19849631	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	19849631	19849640	1	30	480.384	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	5	4	6	5	32	19	32	21	6	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708201984	3	33655529	G	GA	480	PASS	CLASP2	ENST00000307312	r.?	-	-	Ins	intronic	I	33655529	33655537	1	21	427.008	-	-	7	1	1	CLASP2|ENST00000307312|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLASP2|ENST00000307312|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	6	2	8	4	27	26	27	26	8	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708206531	3	52936766	T	TG	389	PASS	SFMBT1	CCDS2867.1	r.?	-	-	Ins	downstream	I	52936766	52936772	1	20	368.815	-	-	5	1	1	SFMBT1|CCDS2867.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SFMBT1|CCDS2867.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	15	17	15	17	0	0	./.	4	3	10	5	26	28	27	28	10	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708209403	3	63552984	G	GA	300	PASS	SYNPR	CCDS46859.1	r.?	-	-	Ins	intronic	I	63552984	63552992	1	10	264.472	-	-	7	1	1	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SYNPR|CCDS46859.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	1	4	5	5	18	27	18	27	5	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708229795	3	139004413	TG	T	300	PASS	MRPS22	CCDS3107.1	r.?	-	-	Del	intronic	D	139004413	139004415	1	12	269.89	-	-	1	1	1	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	4	4	25	18	25	18	4	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708237806	3	167691943	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	167691943	167691952	1	30	479.782	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	4	5	6	23	22	23	22	5	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708256755	4	37584635	C	CT	509	PASS	C4orf19	CCDS3442.1	r.?	-	-	Ins	upstream	I	37584635	37584637	1	30	480.027	-	-	1	1	1	C4orf19|CCDS3442.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	C4orf19|CCDS3442.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	17	0	0	./.	4	5	8	6	25	29	27	29	8	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708258213	4	41901829	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	41901829	41901847	2	12	321.222	-	-	8	1	-	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	5	1	5	1	25	15	25	15	5	1	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708258521	4	42890443	TTC	T	300	PASS	GRXCR1	CCDS43225.1	r.?	-	-	Del	upstream	D	42890443	42890461	2	12	267.886	-	-	8	1	-	GRXCR1|CCDS43225.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GRXCR1|CCDS43225.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	17	8	17	0	0	./.	2	3	4	3	33	25	33	25	4	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708263000	4	59608836	CA	C	569	PASS	-	-	-	-	-	Del	-	D	59608836	59608838	1	32	538.18	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	7	3	10	3	23	15	23	15	10	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708265493	4	67177571	ATGTT	A	360	PASS	-	-	-	-	-	Del	-	D	67177571	67177578	4	15	323.631	-	-	1	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	4	2	5	3	22	27	22	27	5	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708277706	4	112743140	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	112743140	112743147	1	21	425.487	-	-	6	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	2	6	4	10	29	35	29	36	4	10	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708284397	4	136202792	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	136202792	136202802	1	10	266.682	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	1	4	3	6	16	32	16	33	3	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708289917	4	156918681	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	156918681	156918689	1	30	480.027	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	4	5	5	27	27	27	27	5	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708291175	4	160891845	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	160891845	160891865	2	10	267.886	-	-	9	1	-	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	4	1	4	1	34	23	34	23	4	1	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708296738	4	178559032	CT	C	480	PASS	-	-	-	-	-	Del	-	D	178559032	178559034	1	25	431.507	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	4	4	6	8	15	27	15	27	6	8	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708297534	4	180771918	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	180771918	180771925	1	14	373.355	-	-	6	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	6	1	7	1	26	5	27	5	7	1	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708303564	5	4047124	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	4047124	4047134	1	12	318.808	-	-	9	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	1	5	2	7	21	33	21	33	2	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708306231	5	13307563	CTG	C	540	PASS	-	-	-	-	-	Del	-	D	13307563	13307569	2	28	486.34	-	-	2	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	6	3	9	4	26	29	26	29	9	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708320028	5	64607932	G	GATA	745	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Ins	intronic	I	64607932	64607937	3	72	783.474	-	-	1	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	8	7	10	9	37	26	37	26	10	9	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708335544	5	124050963	C	CA	629	PASS	ZNF608	CCDS34219.1	r.?	-	-	Ins	intronic	I	124050963	124050973	1	42	581.17	-	-	9	1	1	ZNF608|CCDS34219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF608|CCDS34219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	6	5	8	5	25	27	25	27	8	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708352003	6	5608671	AAGTTTCCAAGTTCATTCTTACT	A	261	PASS	FARS2	CCDS4494.1	r.?	-	-	Del	intronic	D	5608671	5608695	22	30	486.239	-	-	1	1	1	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	4	4	2	20	20	21	21	5	4	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708363760	6	41526598	TAA	T	720	PASS	FOXP4	CCDS34447.1	r.?	-	-	Del	intronic	D	41526598	41526601	2	45	648.318	-	-	2	1	1	FOXP4|CCDS34447.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FOXP4|CCDS34447.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	8	4	9	22	30	22	30	4	9	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708371780	6	69605672	G	GT	300	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	69605672	69605682	1	12	266.52	-	-	9	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	3	2	4	3	30	28	32	28	4	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708376713	6	87792781	TC	T	540	PASS	CGA	CCDS5007.1	r.?	-	-	Del	downstream	D	87792781	87792785	1	30	483.228	-	-	3	1	1	CGA|CCDS5007.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CGA|CCDS5007.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	22	7	22	0	0	./.	5	4	8	6	24	30	24	30	8	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708386974	6	125463161	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	125463161	125463171	1	30	480.82	-	-	9	1	1	-	-	./.	0	0	0	0	14	9	15	9	0	0	./.	5	4	6	7	25	18	25	18	6	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708390131	6	138723044	G	GA	360	PASS	HEBP2	CCDS5191.1	r.?	-	-	Ins	upstream	I	138723044	138723054	1	16	320.547	-	-	9	1	1	HEBP2|CCDS5191.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	HEBP2|CCDS5191.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	6	3	26	21	26	21	6	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708421600	7	76552532	CA	C	564	PASS	-	-	-	-	-	Del	-	D	76552532	76552537	1	77	865.219	-	-	4	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	10	6	11	7	35	37	35	37	11	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708427495	7	99031746	TA	T	480	PASS	PTCD1	CCDS34691.1	r.?	-	-	Del	intronic	D	99031746	99031748	1	24	426.589	-	-	1	1	1	PTCD1|CCDS34691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTCD1|CCDS34691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	3	5	7	5	24	17	24	17	7	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708428938	7	104761791	C	CA	300	PASS	SRPK2	CCDS5735.1	r.?	-	-	Ins	intronic	I	104761791	104761799	1	12	265.565	-	-	7	1	1	SRPK2|CCDS5735.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRPK2|CCDS5735.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	19	10	0	0	./.	3	2	6	2	19	15	19	15	6	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708474458	8	120875461	C	CT	360	PASS	AP005717.2	ENST00000500705	r.?	-	-	Ins	downstream	I	120875461	120875470	1	15	321.167	-	-	8	1	1	AP005717.2|ENST00000500705|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	AP005717.2|ENST00000500705|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	9	7	9	7	0	0	./.	2	4	4	6	14	25	14	26	4	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708477716	8	133470232	A	AC	420	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Ins	intronic	I	133470232	133470235	1	18	372.889	-	-	2	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	5	3	5	22	19	22	19	3	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708478220	8	135490793	CGAT	C	509	PASS	ZFAT	CCDS47924.1	r.3836_3838delAUC	c.3661_3663delATC	p.I1221delI	Del	inframe	D	135490793	135490799	3	30	475.128	-	-	1	1	1	ZFAT|CCDS47924.1|r.3836_3838delAUC|c.3661_3663delATC|p.I1221delI|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	ZFAT|CCDS47924.1|r.3836_3838delAUC|c.3661_3663delATC|p.I1221delI|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	6	10	6	10	0	0	./.	4	5	6	9	18	28	18	28	6	9	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708482477	9	5627206	TC	T	598	PASS	KIAA1432	CCDS47949.1	r.?	-	-	Del	upstream	D	5627206	5627208	1	42	593.098	-	-	1	1	1	KIAA1432|CCDS47949.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KIAA1432|CCDS47949.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	17	16	17	0	0	./.	5	6	8	7	23	20	23	20	8	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708495699	9	71882012	A	AC	329	PASS	-	-	-	-	-	Ins	-	I	71882012	71882013	1	12	314.313	-	-	0	1	-	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	1	5	1	5	4	16	4	16	1	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708498812	9	83041730	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	83041730	83041739	1	10	267.948	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	16	0	0	./.	1	4	2	5	25	23	26	23	2	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708501489	9	93174640	TA	T	295	PASS	-	-	-	-	-	Del	-	D	93174640	93174649	1	12	270.356	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	5	3	32	23	32	23	5	3	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708521392	X	39104786	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	39104786	39104795	1	12	321.771	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	5	4	6	21	26	22	26	4	6	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708528475	X	82571670	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	82571670	82571680	1	10	265.734	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	4	1	4	32	27	33	29	1	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708531173	X	94445577	AG	A	480	PASS	-	-	-	-	-	Del	-	D	94445577	94445584	1	21	433.845	-	-	6	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	6	2	7	2	21	23	21	23	7	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708532771	X	102447986	AAT	A	300	PASS	ENSG00000226623	ENST00000416953	r.?	-	-	Del	intronic	D	102447986	102448001	2	12	271.153	-	-	7	1	1	ENSG00000226623|ENST00000416953|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000226623|ENST00000416953|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	3	2	28	28	28	28	3	2	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708533773	X	108874841	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	108874841	108874850	1	16	315.148	-	-	8	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	3	3	6	5	20	21	20	23	6	5	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708534706	X	114034578	C	CA	480	PASS	HTR2C	CCDS14564.1	r.?	-	-	Ins	intronic	I	114034578	114034585	1	21	428.426	-	-	6	1	1	HTR2C|CCDS14564.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HTR2C|CCDS14564.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	2	6	5	7	22	25	22	25	5	7	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708536996	X	124015269	CT	C	480	PASS	ODZ1	CCDS14609.1	r.?	-	-	Del	intronic	D	124015269	124015279	1	16	433.845	-	-	9	1	1	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	1	7	3	9	21	33	21	33	3	9	1	1	1	1	1	1	1	1
2661549	PD17982a	PD17982b	2708537891	X	127410906	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	127410906	127410916	1	12	268.143	-	-	9	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	2	3	2	5	30	36	30	36	2	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728471750	1	28116579	G	GA	300	PASS	STX12	CCDS310.1	r.?	-	-	Ins	intronic	I	28116579	28116589	1	6	265.713	-	-	9	1	1	STX12|CCDS310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STX12|CCDS310.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	5	0	5	0	29	42	30	43	5	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728476106	1	42435437	CA	C	360	PASS	-	-	-	-	-	Del	-	D	42435437	42435439	1	15	322.468	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	4	2	5	2	51	30	51	30	5	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728476217	1	42787066	AT	A	360	PASS	FOXJ3	CCDS30689.1	r.?	-	-	Del	intronic	D	42787066	42787070	1	16	322.468	-	-	3	1	1	FOXJ3|CCDS30689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FOXJ3|CCDS30689.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	3	3	4	4	38	37	38	37	4	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728477756	1	47109164	GTTAT	G	538	PASS	ATPAF1	CCDS541.1	r.?	-	-	Del	intronic	D	47109164	47109171	4	36	537.446	-	-	1	1	1	ATPAF1|CCDS541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATPAF1|CCDS541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	5	5	6	30	45	30	45	5	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728490801	1	89007148	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	89007148	89007165	2	10	266.315	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	2	4	27	32	27	32	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728507923	1	158602183	AAT	A	420	PASS	SPTA1	CCDS41423.1	r.?	-	-	Del	intronic	D	158602183	158602188	2	20	374.406	-	-	2	1	1	SPTA1|CCDS41423.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPTA1|CCDS41423.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	4	3	5	6	44	30	44	30	5	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728509471	1	163510977	TCA	T	300	PASS	-	-	-	-	-	Del	-	D	163510977	163510997	2	10	268.723	-	-	9	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	4	1	6	2	38	38	38	38	6	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728513427	1	176065404	C	CT	300	PASS	RFWD2	CCDS30944.1	r.?	-	-	Ins	intronic	I	176065404	176065414	1	10	264.509	-	-	9	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	15	16	0	0	./.	1	4	1	4	46	39	48	39	1	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728513970	1	178204734	CGT	C	300	PASS	RASAL2	CCDS1321.1	r.?	-	-	Del	intronic	D	178204734	178204753	2	6	268.723	-	-	9	1	-	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	0	5	1	7	25	43	25	43	1	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728516746	1	186199410	GA	G	300	PASS	-	-	-	-	-	Del	-	D	186199410	186199420	1	10	266.315	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	1	4	1	44	39	44	39	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728518201	1	189557013	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	189557013	189557029	2	15	317.651	-	-	7	1	-	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	4	2	42	25	42	25	4	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728519017	1	191684255	GTGT	G	569	PASS	-	-	-	-	-	Del	-	D	191684255	191684262	3	32	537.446	-	-	2	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	7	3	10	4	58	45	58	45	10	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728532556	1	230969971	GAT	G	300	PASS	C1orf198	CCDS1587.1	r.?	-	-	Del	downstream	D	230969971	230969988	2	12	268.723	-	-	8	1	1	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	3	2	38	37	38	37	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728532637	1	231128629	CCATGATGTCCAGTCTAT	C	493	PASS	ARV1	CCDS1589.1	r.?	-	-	Del	intronic	D	231128629	231128648	17	84	913.057	-	-	1	1	1	ARV1|CCDS1589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARV1|CCDS1589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	20	5	20	0	0	./.	11	6	11	6	39	44	40	44	12	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728534001	1	234960475	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	234960475	234960479	2	12	266.917	-	-	1	1	-	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	3	29	38	29	38	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728534940	1	236929066	TGCCATCTG	T	261	PASS	ACTN2	CCDS1613.1	r.?	-	-	Del	downstream	D	236929066	236929076	8	28	482.497	-	-	1	1	1	ACTN2|CCDS1613.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ACTN2|CCDS1613.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	23	12	23	12	0	0	./.	3	6	3	6	45	37	45	37	3	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728535501	1	238132757	AAGATAGTTT	A	261	PASS	-	-	-	-	-	Del	-	D	238132757	238132767	9	30	483.702	-	-	1	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	5	4	5	4	40	55	40	55	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728535914	1	239089212	AC	A	269	PASS	-	-	-	-	-	Del	-	D	239089212	239089214	1	6	260.896	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	0	7	0	41	23	41	23	7	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728536023	1	239333167	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	239333167	239333185	2	16	322.468	-	-	8	1	-	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	6	3	46	39	46	39	6	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728536587	1	240697512	C	CA	420	PASS	GREM2	CCDS31070.1	r.?	-	-	Ins	intronic	I	240697512	240697520	1	14	371.998	-	-	7	1	1	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	21	19	21	0	0	./.	1	6	5	9	32	39	32	40	5	9	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728538324	1	244796930	GCA	G	300	PASS	C1orf101	CCDS44340.1	r.?	-	-	Del	intronic	D	244796930	244796946	2	6	268.723	-	-	7	1	-	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	0	5	0	5	37	46	37	46	0	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728546575	10	16088215	CT	C	540	PASS	-	-	-	-	-	Del	-	D	16088215	16088220	1	24	485.644	-	-	4	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	7	5	11	43	43	43	43	5	11	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728554290	10	37680230	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	37680230	37680233	2	15	323.161	-	-	1	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	3	4	28	37	28	37	3	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728555723	10	42401835	AC	A	261	PASS	-	-	-	-	-	Del	-	D	42401835	42401838	1	30	483.236	-	-	2	1	1	-	-	./.	0	0	0	0	25	14	26	66	0	0	./.	5	4	7	5	76	24	76	53	7	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728563558	10	66723442	TC	T	300	PASS	-	-	-	-	-	Del	-	D	66723442	66723444	1	12	269.802	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	1	39	36	39	36	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728566154	10	74015750	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	74015750	74015759	1	6	260.169	-	-	8	1	-	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	0	5	3	6	25	39	26	39	3	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728566901	10	76667743	TGATTG	T	300	PASS	MYST4	CCDS7345.1	r.?	-	-	Del	intronic	D	76667743	76667752	5	12	269.802	-	-	1	1	1	MYST4|CCDS7345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYST4|CCDS7345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	2	3	26	28	26	28	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728572302	10	95717010	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	95717010	95717013	2	16	319.548	-	-	2	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	3	3	3	28	29	28	29	3	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728580070	10	121790158	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	121790158	121790162	1	36	586.942	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	8	3	10	3	29	33	29	34	10	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728591496	11	22638122	TC	T	300	PASS	-	-	-	-	-	Del	-	D	22638122	22638124	1	6	267.677	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	5	0	6	0	36	32	36	32	6	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728594580	11	31180199	GAGA	G	258	PASS	ENSG00000226746	ENST00000399333	r.?	-	-	Del	intronic	D	31180199	31180210	3	12	270.085	-	-	3	1	1	ENSG00000226746|ENST00000399333|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000226746|ENST00000399333|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	3	2	3	28	30	28	30	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728594608	11	31312549	TACTA	T	300	PASS	DCDC1	CCDS7872.1	r.?	-	-	Del	intronic	D	31312549	31312557	4	12	270.085	-	-	1	1	1	DCDC1|CCDS7872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCDC1|CCDS7872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	4	32	29	32	29	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728597707	11	40867585	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	40867585	40867589	2	6	264.667	-	-	1	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	5	0	7	0	53	50	53	50	7	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728598802	11	43989202	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	43989202	43989212	1	10	267.075	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	16	16	0	0	./.	4	1	4	1	28	37	28	37	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728601902	11	57288961	TA	T	300	PASS	-	-	-	-	-	Del	-	D	57288961	57288963	1	12	269.483	-	-	1	1	1	-	-	./.	0	0	0	0	10	24	10	24	0	0	./.	2	3	3	3	33	41	33	41	3	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728604328	11	65199241	CGTT	C	300	PASS	-	-	-	-	-	Del	-	D	65199241	65199252	3	6	270.085	-	-	3	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	5	0	5	1	32	33	32	33	5	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728605604	11	69003581	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	69003581	69003583	1	12	265.269	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	2	3	25	28	25	29	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728610402	11	84013975	CA	C	300	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	84013975	84013985	1	10	270.085	-	-	9	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	4	1	4	1	30	19	30	19	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728612788	11	90907152	TGCTTCTGGGGAGGCCTCAAGGCACTTCTGATCATGGCAGAAAGCAAAAGGG	T	348	PASS	-	-	-	-	-	Del	-	D	90907152	90907205	51	48	648.205	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	7	5	3	1	29	27	34	31	8	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728617980	11	106329403	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	106329403	106329404	1	10	239.982	-	-	0	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	1	4	1	5	37	24	37	25	1	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728620773	11	114453258	TGCACTCCA	T	290	PASS	FAM55D	CCDS41718.1	r.755_762delUGGAGUGC	c.574_581delTGGAGTGC	p.W192fs*6	Del	frameshift	D	114453258	114453268	8	35	529.334	-	-	1	1	1	FAM55D|CCDS41718.1|r.755_762delUGGAGUGC|c.574_581delTGGAGTGC|p.W192fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FAM55D|CCDS41718.1|r.755_762delUGGAGUGC|c.574_581delTGGAGTGC|p.W192fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	15	7	15	7	0	0	./.	4	6	6	6	27	32	27	32	6	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728622930	11	120885347	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	120885347	120885357	1	10	267.075	-	-	9	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	1	4	1	4	35	37	35	37	1	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728623312	11	122178307	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	122178307	122178325	2	12	270.085	-	-	8	1	-	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	3	32	31	32	31	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728644160	12	52861338	TC	T	420	PASS	KRT6C	CCDS8829.1	r.?	-	-	Del	downstream	D	52861338	52861341	1	20	378.406	-	-	2	1	1	KRT6C|CCDS8829.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KRT6C|CCDS8829.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	17	15	17	0	0	./.	3	4	4	6	30	40	30	40	4	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728647837	12	65173597	CACTTA	C	613	PASS	TBC1D30	ENST00000229088	r.?	-	-	Del	upstream	D	65173597	65173606	5	98	1026.5	-	-	1	1	1	TBC1D30|ENST00000229088|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TBC1D30|ENST00000229088|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	16	14	16	0	0	./.	13	6	15	7	45	37	45	37	15	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728649702	12	70931603	TG	T	600	PASS	PTPRB	CCDS44943.1	r.?	-	-	Del	intronic	D	70931603	70931607	1	36	539.375	-	-	3	1	1	PTPRB|CCDS44943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRB|CCDS44943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	5	6	6	34	19	34	19	6	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728652950	12	82410381	AGCAGCCTCAGGAAACTTACAATCCCG	A	261	PASS	-	-	-	-	-	Del	-	D	82410381	82410412	26	28	486.522	-	-	1	1	1	-	-	./.	0	0	0	0	6	22	6	22	0	0	./.	3	6	2	4	24	33	25	35	3	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728655306	12	91209734	TTAAC	T	389	PASS	-	-	-	-	-	Del	-	D	91209734	91209743	4	20	378.406	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	4	5	4	43	24	43	24	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728669415	13	19866712	CTTTCC	CCTT	269	PASS	-	-	-	-	-	Complex	-	DI	19866713	19866717	5	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	0	0	44	47	44	47	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728671142	13	23700955	GA	G	480	PASS	-	-	-	-	-	Del	-	D	23700955	23700957	1	16	433.109	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	1	7	4	7	31	45	31	45	4	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728675388	13	34598465	GAC	G	269	PASS	-	-	-	-	-	Del	-	D	34598465	34598485	2	12	256.846	-	-	9	1	-	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	4	31	36	31	36	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728676165	13	37116789	CA	C	540	PASS	-	-	-	-	-	Del	-	D	37116789	37116794	1	30	487.248	-	-	4	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	5	7	6	40	30	40	30	7	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728676213	13	37320847	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	37320847	37320856	1	15	313.393	-	-	8	1	1	-	-	./.	0	0	0	0	13	18	14	18	0	0	./.	2	4	6	5	34	31	36	31	6	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728683214	13	58971198	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	58971198	58971208	1	15	321.219	-	-	9	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	4	2	4	2	31	29	32	29	4	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728683336	13	59317775	AGCCTAT	A	261	PASS	-	-	-	-	-	Del	-	D	59317775	59317784	6	30	487.248	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	5	4	5	4	34	41	34	41	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728685135	13	64271275	AT	A	298	PASS	-	-	-	-	-	Del	-	D	64271275	64271283	1	15	324.832	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	5	4	25	27	25	27	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728689867	13	78265847	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	78265847	78265855	1	25	428.293	-	-	7	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	4	4	4	8	27	45	27	45	4	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728689881	13	78304729	TA	T	660	PASS	SLAIN1	CCDS31995.1	r.?	-	-	Del	intronic	D	78304729	78304733	1	42	595.525	-	-	3	1	1	SLAIN1|CCDS31995.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLAIN1|CCDS31995.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	6	5	9	6	35	33	35	33	9	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728690095	13	78988535	TATC	T	269	PASS	-	-	-	-	-	Del	-	D	78988535	78988541	3	12	270.693	-	-	1	1	1	-	-	./.	0	0	0	0	22	26	22	26	0	0	./.	2	3	2	4	25	27	25	27	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728694905	13	93608317	C	CGT	300	PASS	-	-	-	-	-	Ins	-	I	93608317	93608333	2	10	263.468	-	-	7	1	-	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	1	4	2	3	25	26	25	26	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728697264	13	100393822	GGGGGACGGAGTCCCACTCC	G	377	PASS	CLYBL	ENST00000376360	r.?	-	-	Del	intronic	D	100393822	100393843	19	56	696.577	-	-	1	1	1	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLYBL|ENST00000376360|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	6	7	5	7	34	25	35	26	6	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728701555	13	112846957	ATTCTTT	ATCCT	389	PASS	AL162499.2	ENST00000507553	r.?	-	-	Complex	upstream	DI	112846958	112846963	6	18	0	-	-	0	1	1	AL162499.2|ENST00000507553|r.?|-|-|non_protein_coding:indel:5KB_upstream_variant|SO:0000011:SO:1000032:SO:0001635	AL162499.2|ENST00000507553|r.?|-|-|non_protein_coding:indel:5KB_upstream_variant|SO:0000011:SO:1000032:SO:0001635	./.	0	0	0	0	12	8	12	8	0	0	./.	5	2	0	0	32	21	32	21	5	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728710495	14	42399006	AATCTGTGTATTTCTTATTAAATTTAAGGGAAACTCTTAAAAATGAAAAGG	A	290	PASS	-	-	-	-	-	Del	-	D	42399006	42399057	50	36	539.643	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	5	0	1	27	34	32	38	5	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728725222	14	87868140	AAAGATAAAATGTC	A	319	PASS	-	-	-	-	-	Del	-	D	87868140	87868157	13	42	596.256	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	5	6	5	7	31	47	31	47	5	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728727238	14	93741036	AG	A	360	PASS	BTBD7	CCDS32146.1	r.?	-	-	Del	intronic	D	93741036	93741038	1	15	324.629	-	-	1	1	1	BTBD7|CCDS32146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD7|CCDS32146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	4	4	5	24	24	24	24	4	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728727916	14	96044872	C	CT	326	PASS	-	-	-	-	-	Ins	-	I	96044872	96044881	1	15	321.618	-	-	8	1	1	-	-	./.	0	0	0	0	3	18	3	18	0	0	./.	2	4	4	6	21	34	21	34	4	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728728189	14	96904144	CT	C	300	PASS	AK7	CCDS9945.1	r.?	-	-	Del	intronic	D	96904144	96904154	1	12	271.026	-	-	9	1	1	AK7|CCDS9945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK7|CCDS9945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	4	4	27	23	27	23	4	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728731164	14	106819938	T	TA	267	PASS	-	-	-	-	-	Ins	-	I	106819938	106819946	1	15	321.618	-	-	7	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	2	4	4	35	23	35	23	4	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728734236	15	26366401	A	AAGATAT	261	PASS	-	-	-	-	-	Ins	-	I	26366401	26366409	6	24	453.938	-	-	1	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	7	2	7	2	33	28	33	28	7	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728734282	15	26541248	TGGC	TTG	360	PASS	-	-	-	-	-	Complex	-	DI	26541249	26541251	3	16	0	-	-	0	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	3	3	0	0	31	33	31	33	3	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728753185	15	85969696	GCA	G	300	PASS	AKAP13	CCDS32320.1	r.?	-	-	Del	intronic	D	85969696	85969701	2	12	271.253	-	-	2	1	1	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	2	3	2	4	27	44	27	44	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728768480	16	29431153	CA	C	319	PASS	-	-	-	-	-	Del	-	D	29431153	29431161	1	12	596.385	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	11	0	21	0	54	27	54	27	21	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728773544	16	51667827	C	CAAAT	420	PASS	-	-	-	-	-	Ins	-	I	51667827	51667855	4	18	361.456	-	-	6	1	-	-	-	./.	0	0	0	0	12	10	14	10	0	0	./.	5	2	5	3	30	26	30	27	5	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728776326	16	59938177	TA	T	300	PASS	AC009094.1	ENST00000500445	r.?	-	-	Del	intronic	D	59938177	59938183	1	10	271.084	-	-	5	1	1	AC009094.1|ENST00000500445|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC009094.1|ENST00000500445|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	1	4	2	33	24	33	24	4	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728805459	17	59641071	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	59641071	59641081	1	42	579.599	-	-	9	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	5	6	5	6	34	50	34	50	5	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728807076	17	64304367	AT	A	540	PASS	PRKCA	CCDS11664.1	r.?	-	-	Del	intronic	D	64304367	64304375	1	28	487.408	-	-	7	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	3	6	3	7	29	34	29	34	3	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728809893	17	71475483	CGT	C	300	PASS	SDK2	CCDS45769.1	r.?	-	-	Del	intronic	D	71475483	71475500	2	10	269.913	-	-	8	1	-	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	1	4	1	4	28	25	28	25	1	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728816327	18	7546973	AC	A	360	PASS	-	-	-	-	-	Del	-	D	7546973	7546977	1	16	325.314	-	-	3	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	3	3	4	4	46	32	46	32	4	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728822552	18	28011652	AAGACGATGAAGTAGGGACTTACAGTTAAAAT	A	290	PASS	-	-	-	-	-	Del	-	D	28011652	28011686	31	35	542.19	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	6	4	5	1	46	35	47	38	6	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728826323	18	40283358	ACT	A	420	PASS	-	-	-	-	-	Del	-	D	40283358	40283368	2	20	379.533	-	-	4	1	1	-	-	./.	0	0	0	0	9	25	9	25	0	0	./.	3	4	3	4	26	36	26	36	3	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728829410	18	50662331	CT	C	480	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50662331	50662334	1	9	433.752	-	-	2	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	25	21	25	0	0	./.	0	8	1	8	28	43	28	43	1	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728830134	18	52867423	G	GAAAGA	329	PASS	-	-	-	-	-	Ins	-	I	52867423	52867431	5	12	307.252	-	-	1	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	1	5	2	41	23	41	24	5	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728845045	19	16919360	A	AAAAAG	389	PASS	NWD1	CCDS32945.1	r.?	-	-	Ins	intronic	I	16919360	16919386	5	20	358.42	-	-	5	1	-	NWD1|CCDS32945.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NWD1|CCDS32945.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	10	8	10	0	0	./.	3	4	4	5	29	26	30	26	4	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728861516	2	5002313	ACTAATTCAGGAATTCCTAC	A	435	PASS	-	-	-	-	-	Del	-	D	5002313	5002333	19	72	806.678	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	8	7	8	32	30	32	30	7	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728865284	2	15431548	ATTGTGGTCTTAGAAACAAAACATCTCTAC	A	348	PASS	NBAS	CCDS1685.1	r.?	-	-	Del	intronic	D	15431548	15431580	29	40	645.342	-	-	1	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	9	3	8	3	32	41	33	41	9	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728867089	2	21475962	GCTGCTCTGAATGT	G	290	PASS	-	-	-	-	-	Del	-	D	21475962	21475979	13	32	537.785	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	7	2	7	18	45	19	45	3	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728871903	2	35967374	CTGTCTCCTACAAATAG	C	348	PASS	-	-	-	-	-	Del	-	D	35967374	35967393	16	48	643.536	-	-	1	1	1	-	-	./.	0	0	0	0	6	20	6	20	0	0	./.	5	7	5	8	44	35	44	35	5	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728873462	2	40121474	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	40121474	40121484	1	10	264.678	-	-	9	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	4	1	4	1	34	27	34	27	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728873668	2	40849930	AAT	A	540	PASS	-	-	-	-	-	Del	-	D	40849930	40849941	2	30	480.394	-	-	5	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	5	8	7	38	35	38	35	8	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728876883	2	50696310	TG	T	480	PASS	NRXN1	CCDS46282.1	r.?	-	-	Del	intronic	D	50696310	50696316	1	25	427.218	-	-	5	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	4	4	8	8	41	31	41	31	8	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728877187	2	51800681	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	51800681	51800696	2	12	268.893	-	-	7	1	1	-	-	./.	0	0	0	0	20	10	20	10	0	0	./.	3	2	3	2	29	26	29	26	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728879403	2	58523512	TC	T	300	PASS	-	-	-	-	-	Del	-	D	58523512	58523514	1	10	260.464	-	-	1	1	-	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	1	6	1	44	35	44	35	6	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728881967	2	66687871	TTTG	T	300	PASS	MEIS1	CCDS46309.1	r.?	-	-	Del	intronic	D	66687871	66687901	3	12	268.893	-	-	9	1	-	MEIS1|CCDS46309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEIS1|CCDS46309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	2	5	3	32	30	32	30	5	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728882641	2	68578431	ATCACAGTACAATATGCCATACTGCACTGG	A	377	PASS	-	-	-	-	-	Del	-	D	68578431	68578464	29	54	697.917	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	8	5	6	34	42	34	44	5	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728883829	2	72829635	TATCAATTAATTAAAATCTTTCAA	T	319	PASS	EXOC6B	CCDS46333.1	r.?	-	-	Del	intronic	D	72829635	72829661	23	40	580.727	-	-	1	1	1	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	7	4	6	4	33	41	34	41	7	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728894755	2	110097850	TC	T	300	PASS	SH3RF3	ENST00000309415	r.?	-	-	Del	intronic	D	110097850	110097853	1	6	268.893	-	-	2	1	1	SH3RF3|ENST00000309415|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3RF3|ENST00000309415|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	5	0	6	0	33	15	33	15	6	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728906438	2	147248399	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	147248399	147248414	2	10	268.893	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	1	4	1	35	29	35	29	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728915382	2	176336073	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	176336073	176336075	1	6	264.678	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	12	0	0	./.	0	5	0	1	25	28	25	28	0	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728920494	2	193707194	TGAAA	T	327	PASS	-	-	-	-	-	Del	-	D	193707194	193707199	4	18	376.45	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	2	5	3	7	31	31	31	31	3	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728923900	2	204849035	AGT	A	389	PASS	-	-	-	-	-	Del	-	D	204849035	204849039	2	20	376.45	-	-	1	1	1	-	-	./.	0	0	0	0	20	5	20	5	0	0	./.	4	3	4	5	24	41	24	41	4	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728938739	20	7389863	AC	A	480	PASS	-	-	-	-	-	Del	-	D	7389863	7389867	1	24	434.699	-	-	3	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	3	5	3	5	34	31	34	31	3	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728939117	20	8645093	GA	G	300	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8645093	8645103	1	12	271.085	-	-	9	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	2	4	35	36	35	36	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728941911	20	16962960	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	16962960	16962967	1	12	322.412	-	-	6	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	1	5	2	5	16	49	18	50	2	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728943957	20	24132945	AG	A	420	PASS	-	-	-	-	-	Del	-	D	24132945	24132948	1	8	380.362	-	-	2	1	1	-	-	./.	0	0	0	0	21	8	21	8	0	0	./.	7	0	8	1	41	38	41	38	8	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728946401	20	29905669	TTCTGTTTAGCCACCTAAATTTAGGTCTCCTTACAATACTCCAAAAGTCATATATATCATATGAA	T	261	PASS	-	-	-	-	-	Del	-	D	29905669	29905736	64	28	487.832	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	6	3	0	0	43	30	49	33	6	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728949652	20	40810539	T	TA	300	PASS	PTPRT	CCDS42874.1	r.?	-	-	Ins	intronic	I	40810539	40810549	1	12	266.87	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	11	24	11	0	0	./.	2	3	4	3	52	32	52	32	4	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728959519	21	10793946	C	CGAATAGAATGGACTT	283	PASS	ENSG00000232449	ENST00000422789	r.75+3_75+4insgaauagaauggacuu	c.75+3_75+4insGAATAGAATGGACTT	p.?	Ins	ess splice	I	10793946	10793957	15	42	498.04	-	-	0	1	1	ENSG00000232449|ENST00000422789|r.75+3_75+4insgaauagaauggacuu|c.75+3_75+4insGAATAGAATGGACTT|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	ENSG00000232449|ENST00000422789|r.75+3_75+4insgaauagaauggacuu|c.75+3_75+4insGAATAGAATGGACTT|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	./.	0	0	0	0	35	19	38	22	0	0	./.	6	5	0	0	83	51	86	57	6	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728963300	21	20947707	TC	T	300	PASS	-	-	-	-	-	Del	-	D	20947707	20947710	1	10	269.402	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	1	4	3	4	34	32	34	32	3	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728967641	21	32141873	CAAAT	C	478	PASS	-	-	-	-	-	Del	-	D	32141873	32141883	4	30	486.85	-	-	2	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	5	4	5	4	33	34	33	34	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728973053	21	47544462	CG	C	300	PASS	COL6A2	CCDS13728.1	r.?	-	-	Del	intronic	D	47544462	47544464	1	6	259.167	-	-	1	1	1	COL6A2|CCDS13728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL6A2|CCDS13728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	5	0	10	0	37	18	37	18	10	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728974139	22	17745499	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	17745499	17745516	2	16	321.124	-	-	8	1	-	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	3	4	3	27	32	27	32	4	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728977620	22	27781233	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	27781233	27781241	1	15	324.134	-	-	7	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	2	5	2	37	26	37	26	5	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728987007	3	4796630	TCC	T	480	PASS	ITPR1	CCDS46740.1	r.?	-	-	Del	intronic	D	4796630	4796635	2	21	430.189	-	-	4	1	1	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	2	6	4	7	22	37	22	37	4	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728987228	3	5331307	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	5331307	5331324	2	12	267.439	-	-	8	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	3	33	49	33	49	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728990466	3	14029174	CT	C	416	PASS	TPRXL	ENST00000326972	r.?	-	-	Del	intronic	D	14029174	14029180	1	54	695.22	-	-	5	1	1	TPRXL|ENST00000326972|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TPRXL|ENST00000326972|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	8	5	9	5	39	29	39	29	9	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728994983	3	27316266	GGAAATGCTGAT	G	319	PASS	NEK10	CCDS46781.1	r.?	-	-	Del	intronic	D	27316266	27316280	11	40	586.318	-	-	1	1	1	NEK10|CCDS46781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK10|CCDS46781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	7	4	7	4	27	45	28	45	8	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728995662	3	29432480	ATC	A	900	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29432480	29432486	2	70	807.132	-	-	2	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	9	6	11	10	31	47	31	47	11	10	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728995908	3	30122973	TATTTA	T	360	PASS	-	-	-	-	-	Del	-	D	30122973	30122985	5	15	323.094	-	-	2	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	2	4	4	5	13	10	13	10	4	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2728998836	3	39494468	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	39494468	39494472	2	6	268.643	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	0	8	0	43	40	43	40	8	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729002401	3	51435619	ATATAT	A	269	PASS	RBM15B	CCDS33764.1	r.?	-	-	Del	downstream	D	51435619	51435631	5	12	269.245	-	-	2	1	1	RBM15B|CCDS33764.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	VPRBP|ENST00000273612|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	6	5	6	0	0	./.	2	3	2	5	8	21	8	21	2	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729011684	3	78227737	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	78227737	78227753	2	10	269.245	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	1	5	32	50	32	50	1	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729023201	3	117467062	CA	C	300	PASS	-	-	-	-	-	Del	-	D	117467062	117467064	1	12	269.245	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	4	32	36	32	36	3	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729034065	3	151777065	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	151777065	151777074	1	40	638.963	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	3	9	5	14	43	54	43	54	5	14	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729034431	3	152803553	CTATGCA	C	305	PASS	-	-	-	-	-	Del	-	D	152803553	152803564	6	36	591.134	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	3	8	4	8	34	35	34	35	4	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729035858	3	157382422	CATA	C	389	PASS	C3orf55	ENST00000461040	r.?	-	-	Del	intronic	D	157382422	157382428	3	18	376.943	-	-	1	1	1	C3orf55|ENST00000461040|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	C3orf55|ENST00000461040|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	2	6	2	40	25	40	25	6	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729038163	3	164741600	TA	T	960	PASS	SI	CCDS3196.1	r.?	-	-	Del	intronic	D	164741600	164741603	1	81	861.583	-	-	2	1	1	SI|CCDS3196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SI|CCDS3196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	8	8	9	8	45	48	45	48	9	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729038926	3	167068012	A	ATACTAATCTAGACTCT	261	PASS	ZBBX	CCDS3199.2	r.?	-	-	Ins	intronic	I	167068012	167068013	16	28	397.944	-	-	0	1	1	ZBBX|CCDS3199.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZBBX|CCDS3199.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	12	0	0	./.	3	6	2	6	36	46	36	47	3	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729043604	3	181244957	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	181244957	181244972	2	12	268.041	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	2	3	40	43	40	43	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729046554	3	189309682	GACAA	G	689	PASS	-	-	-	-	-	Del	-	D	189309682	189309690	4	48	646.187	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	7	8	10	49	45	49	45	8	10	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729048253	3	193894724	TC	T	780	PASS	-	-	-	-	-	Del	-	D	193894724	193894727	1	56	697.628	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	6	8	8	45	39	45	39	8	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729055288	4	16962794	CA	C	300	PASS	-	-	-	-	-	Del	-	D	16962794	16962801	1	12	269.215	-	-	6	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	3	2	3	2	38	35	38	35	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729060482	4	32962009	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	32962009	32962019	1	10	266.205	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	1	4	1	5	38	46	38	46	1	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729096112	4	145298727	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	145298727	145298735	1	20	372.687	-	-	7	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	3	4	4	6	34	46	35	48	4	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729099240	4	155588401	G	GA	300	PASS	LRAT	ENST00000502525	r.?	-	-	Ins	intronic	I	155588401	155588411	1	12	266.205	-	-	9	1	1	LRAT|ENST00000502525|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRAT|ENST00000502525|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	3	2	3	2	39	44	39	44	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729113544	5	1206354	TTC	T	269	PASS	SLC6A19	CCDS34130.1	r.?	-	-	Del	intronic	D	1206354	1206371	2	6	268.441	-	-	8	1	1	SLC6A19|CCDS34130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC6A19|CCDS34130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	0	5	1	6	32	36	32	36	1	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729124043	5	29586860	AG	A	600	PASS	-	-	-	-	-	Del	-	D	29586860	29586862	1	35	539.291	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	6	6	8	41	36	41	36	6	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729133231	5	60204519	GAA	G	300	PASS	ERCC8	CCDS3978.1	r.?	-	-	Del	intronic	D	60204519	60204524	2	6	269.645	-	-	4	1	1	ERCC8|CCDS3978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERCC8|CCDS3978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	1	15	1	0	0	./.	5	0	6	0	36	0	36	0	6	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729138437	5	79262280	TG	T	300	PASS	-	-	-	-	-	Del	-	D	79262280	79262282	1	12	269.645	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	5	18	35	18	35	3	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729147089	5	108968782	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	108968782	108968792	1	9	415.177	-	-	9	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	0	8	1	8	9	19	9	19	1	9	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729147314	5	110189039	ATTAAG	A	300	PASS	-	-	-	-	-	Del	-	D	110189039	110189049	5	10	268.441	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	4	2	34	28	34	28	4	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729155689	5	140364875	AGTGTTGGCTGATAGCCTGGTGGCCAG	A	261	PASS	PCDHA11	CCDS47284.1	r.?	-	-	Del	intronic	D	140364875	140364902	26	30	485.362	-	-	1	1	1	PCDHA11|CCDS47284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDHA11|CCDS47284.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	5	4	4	34	27	35	28	5	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729158094	5	148533695	C	CA	420	PASS	ABLIM3	CCDS4294.1	r.?	-	-	Ins	intronic	I	148533695	148533698	1	14	373.289	-	-	2	1	1	ABLIM3|CCDS4294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABLIM3|CCDS4294.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	8	24	8	0	0	./.	6	1	10	4	34	21	34	21	10	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729189688	6	58355068	C	CAG	259	PASS	-	-	-	-	-	Ins	-	I	58355068	58355087	2	8	368.903	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	7	0	7	0	33	20	33	20	7	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729191347	6	66555869	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	66555869	66555878	1	12	266.512	-	-	8	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	2	3	4	3	41	42	42	42	4	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729195769	6	79741200	ACTTGAAAACAC	A	319	PASS	PHIP	CCDS4987.1	r.?	-	-	Del	intronic	D	79741200	79741212	11	40	590.541	-	-	1	1	1	PHIP|CCDS4987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHIP|CCDS4987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	7	4	7	4	43	41	43	41	7	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729198870	6	90222307	AG	A	420	PASS	ANKRD6	CCDS47460.1	r.?	-	-	Del	intronic	D	90222307	90222309	1	20	377.331	-	-	1	1	1	ANKRD6|CCDS47460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANKRD6|CCDS47460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	5	4	32	38	32	38	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729201633	6	99495612	ATCCTAATAACCTTG	A	261	PASS	-	-	-	-	-	Del	-	D	99495612	99495628	14	28	485.14	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	6	3	7	39	42	39	42	3	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729202283	6	101348729	GC	G	300	PASS	-	-	-	-	-	Del	-	D	101348729	101348731	1	10	269.522	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	1	4	1	7	30	52	30	52	1	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729203238	6	104452145	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	104452145	104452161	2	12	268.92	-	-	7	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	2	3	2	3	46	37	46	37	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729206966	6	115586980	AT	A	300	PASS	-	-	-	-	-	Del	-	D	115586980	115586985	1	12	269.522	-	-	4	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	3	2	6	2	33	21	33	21	6	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729210269	6	125612918	C	CTCTG	358	PASS	HDDC2	CCDS43503.1	r.?	-	-	Ins	intronic	I	125612918	125612923	4	20	360.474	-	-	1	1	1	HDDC2|CCDS43503.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDDC2|CCDS43503.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	15	14	0	0	./.	4	3	5	3	45	35	46	35	5	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729215353	6	141343338	AG	A	360	PASS	-	-	-	-	-	Del	-	D	141343338	141343340	1	7	311.988	-	-	1	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	6	0	9	0	60	37	60	37	9	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729217087	6	147200876	TCTGCTAAAGAATCCCCAGCCCAGCGTTTTTTTGGTGGGGG	T	290	PASS	-	-	-	-	-	Del	-	D	147200876	147200918	40	32	537.239	-	-	1	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	7	3	4	0	36	33	39	36	7	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729221048	6	158652312	CT	C	300	PASS	-	-	-	-	-	Del	-	D	158652312	158652322	1	12	268.92	-	-	9	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	2	3	36	36	36	36	2	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729223338	6	164783031	AATATCATGGTTTTT	A	319	PASS	-	-	-	-	-	Del	-	D	164783031	164783049	14	42	592.949	-	-	1	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	5	6	5	5	38	37	38	38	5	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729225246	6	170692564	GT	G	327	PASS	FAM120B	CCDS5314.1	r.?	-	-	Del	intronic	D	170692564	170692567	1	20	376.127	-	-	2	1	1	FAM120B|CCDS5314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM120B|CCDS5314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	7	4	41	30	41	30	7	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729230817	7	15294985	TAA	T	480	PASS	TMEM195	CCDS34604.1	r.?	-	-	Del	intronic	D	15294985	15294993	2	24	431.49	-	-	7	1	1	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM195|CCDS34604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	3	6	4	29	35	29	35	6	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729231589	7	17686154	AGTCAT	A	356	PASS	-	-	-	-	-	Del	-	D	17686154	17686161	5	24	431.49	-	-	1	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	5	3	5	4	26	42	26	42	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729233696	7	23836167	C	CT	900	PASS	STK31	CCDS43556.1	r.?	-	-	Ins	intronic	I	23836167	23836176	1	72	797.605	-	-	8	1	1	STK31|CCDS43556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STK31|CCDS43556.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	8	7	10	8	37	38	38	39	10	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729233988	7	24700162	AAC	A	300	PASS	MPP6	CCDS5388.1	r.?	-	-	Del	intronic	D	24700162	24700181	2	10	269.079	-	-	9	1	1	MPP6|CCDS5388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MPP6|CCDS5388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	10	21	10	0	0	./.	1	4	1	4	34	41	34	41	1	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729234854	7	27241164	TAGTGCTGGGGAG	T	319	PASS	HOXA13	CCDS5412.1	r.?	-	-	Del	upstream	D	27241164	27241185	12	42	581.258	-	-	1	1	1	HOXA13|CCDS5412.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	HOXA13|CCDS5412.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	8	9	8	0	0	./.	6	5	7	3	25	32	25	32	7	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729235174	7	28154228	TC	T	300	PASS	JAZF1	CCDS5416.1	r.?	-	-	Del	intronic	D	28154228	28154230	1	6	255.232	-	-	1	1	1	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	0	7	0	31	38	31	38	7	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729236589	7	32558266	A	AT	780	PASS	AVL9	CCDS34613.1	r.?	-	-	Ins	intronic	I	32558266	32558274	1	36	692.141	-	-	7	1	1	AVL9|CCDS34613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AVL9|CCDS34613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	11	2	14	4	42	23	42	23	14	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729238526	7	37897899	C	CT	300	PASS	TXNDC3	CCDS5452.1	r.?	-	-	Ins	intronic	I	37897899	37897906	1	12	266.671	-	-	6	1	1	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	2	23	2	0	0	./.	3	2	6	2	29	11	29	12	6	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729238955	7	39024432	TCTAAAAA	T	261	PASS	POU6F2	ENST00000403058	r.?	-	-	Del	intronic	D	39024432	39024442	7	24	482.416	-	-	1	1	1	POU6F2|ENST00000403058|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	POU6F2|ENST00000403058|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	2	11	4	46	32	46	32	11	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729239700	7	41382294	AG	A	757	PASS	ENSG00000236089	ENST00000443116	r.?	-	-	Del	intronic	D	41382294	41382296	1	54	700.57	-	-	1	1	1	ENSG00000236089|ENST00000443116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000236089|ENST00000443116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	5	8	7	9	25	28	25	28	7	9	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729239797	7	41755102	G	GGTGCT	385	PASS	-	-	-	-	-	Ins	-	I	41755102	41755110	5	18	458.334	-	-	1	1	1	-	-	./.	0	0	0	0	12	26	12	26	0	0	./.	8	1	8	2	35	30	35	30	8	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729242174	7	49464025	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	49464025	49464029	1	16	320.005	-	-	3	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	3	3	5	25	32	25	33	3	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729245867	7	61528551	GC	G	300	PASS	-	-	-	-	-	Del	-	D	61528551	61528553	1	12	269.079	-	-	1	1	1	-	-	./.	0	0	0	0	26	23	26	23	0	0	./.	2	3	4	6	49	81	49	81	4	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729250118	7	70681222	AAG	A	300	PASS	WBSCR17	CCDS5540.1	r.?	-	-	Del	intronic	D	70681222	70681240	2	10	269.682	-	-	8	1	1	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	2	4	28	26	28	26	2	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729252389	7	77227228	T	TA	480	PASS	PTPN12	CCDS5592.1	r.?	-	-	Ins	intronic	I	77227228	77227230	1	24	426.674	-	-	1	1	1	PTPN12|CCDS5592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPN12|CCDS5592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	5	4	6	26	43	26	44	4	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729253463	7	79989842	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	79989842	79989860	2	12	269.682	-	-	8	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	4	4	31	37	31	37	4	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729253508	7	80163750	AAG	A	300	PASS	CD36	CCDS34673.1	r.?	-	-	Del	intronic	D	80163750	80163754	2	6	264.865	-	-	1	1	1	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	5	0	3	0	41	28	41	28	5	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729261265	7	104735521	A	AT	420	PASS	MLL5	CCDS34723.1	r.?	-	-	Ins	intronic	I	104735521	104735525	1	18	373.34	-	-	3	1	1	MLL5|CCDS34723.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MLL5|CCDS34723.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	2	5	2	5	11	28	11	28	2	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729270675	7	134595403	TAC	T	329	PASS	CALD1	CCDS5836.1	r.?	-	-	Del	intronic	D	134595403	134595422	2	15	313.985	-	-	9	1	-	CALD1|CCDS5836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALD1|CCDS5836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	4	3	30	25	30	25	4	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729273889	7	144712307	TC	T	449	PASS	-	-	-	-	-	Del	-	D	144712307	144712309	1	25	431.49	-	-	1	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	4	4	5	5	26	32	26	32	5	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729281887	8	8137573	CGT	C	420	PASS	-	-	-	-	-	Del	-	D	8137573	8137590	2	18	378.109	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	2	5	1	41	25	41	25	5	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729294537	8	51199267	TGTTGTCTGGGTTAAG	T	319	PASS	-	-	-	-	-	Del	-	D	51199267	51199287	15	40	594.171	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	7	4	9	4	41	37	41	37	9	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729297683	8	60885266	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	60885266	60885270	2	10	270.078	-	-	1	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	4	1	4	1	49	33	49	33	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729298887	8	64804697	AT	A	480	PASS	-	-	-	-	-	Del	-	D	64804697	64804703	1	24	432.124	-	-	5	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	5	3	5	4	46	37	46	37	5	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729304842	8	84969708	GT	G	300	PASS	-	-	-	-	-	Del	-	D	84969708	84969710	1	6	262.853	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	0	5	0	17	31	17	31	5	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729305095	8	85778021	ACT	A	420	PASS	RALYL	ENST00000399361	r.?	-	-	Del	intronic	D	85778021	85778026	2	18	376.905	-	-	2	1	1	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	5	4	8	24	30	24	30	4	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729307211	8	93550179	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	93550179	93550189	1	10	264.659	-	-	9	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	4	1	4	1	45	42	45	43	4	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729312528	8	111393418	TTAGAAATATGTAAGAATCCTCTCCCAGCCATTGAAACCATAGGATACACTGATG	T	261	PASS	-	-	-	-	-	Del	-	D	111393418	111393475	54	30	486.14	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	5	0	1	34	29	38	33	4	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729319031	8	131839307	TA	T	300	PASS	ADCY8	CCDS6363.1	r.?	-	-	Del	intronic	D	131839307	131839316	1	12	269.476	-	-	8	1	1	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY8|CCDS6363.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	7	19	7	0	0	./.	2	3	2	5	39	38	39	38	2	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729320279	8	136169994	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	136169994	136169998	1	12	256.832	-	-	3	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	3	3	30	30	30	30	3	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729321384	8	139368523	G	GAA	300	PASS	FAM135B	CCDS6375.2	r.?	-	-	Ins	intronic	I	139368523	139368525	2	12	262.853	-	-	1	1	1	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	18	12	0	0	./.	3	2	4	2	42	28	42	29	4	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729322472	8	143088811	GA	G	360	PASS	-	-	-	-	-	Del	-	D	143088811	143088813	1	16	323.491	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	3	4	4	20	42	20	42	4	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729328228	9	14923929	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	14923929	14923939	1	12	266.81	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	20	0	0	./.	3	2	3	1	46	45	46	46	3	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729329413	9	18316802	TAA	T	258	PASS	-	-	-	-	-	Del	-	D	18316802	18316805	2	10	270.422	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	1	4	1	6	32	25	32	25	1	6	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729342653	9	78144722	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	78144722	78144739	2	12	270.422	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	2	3	3	3	40	41	40	41	3	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729343059	9	79329057	GATT	G	420	PASS	PRUNE2	CCDS47982.1	r.?	-	-	Del	intronic	D	79329057	79329068	3	14	375.581	-	-	3	1	1	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	1	6	2	7	31	39	31	39	2	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729344902	9	85442528	GACA	G	360	PASS	-	-	-	-	-	Del	-	D	85442528	85442535	3	15	324.506	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	4	2	25	30	25	30	4	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729349494	9	101781255	AAG	A	300	PASS	COL15A1	CCDS35081.1	r.?	-	-	Del	intronic	D	101781255	101781273	2	6	270.422	-	-	8	1	-	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL15A1|CCDS35081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	5	0	5	2	30	36	30	36	5	2	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729352107	9	110930408	CA	C	420	PASS	-	-	-	-	-	Del	-	D	110930408	110930410	1	18	376.785	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	5	2	7	38	40	38	40	2	7	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729355804	9	121398899	CT	C	360	PASS	-	-	-	-	-	Del	-	D	121398899	121398905	1	16	320.894	-	-	5	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	3	3	3	3	40	27	40	27	3	3	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729356971	9	125592190	CT	C	420	PASS	PDCL	CCDS6845.1	r.?	-	-	Del	upstream	D	125592190	125592192	1	20	378.591	-	-	1	1	1	PDCL|CCDS6845.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PDCL|CCDS6845.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	7	4	29	15	29	15	7	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729364778	X	13941296	A	AG	300	PASS	GPM6B	CCDS48084.1	r.?	-	-	Ins	intronic	I	13941296	13941298	1	12	263.477	-	-	1	1	1	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	2	3	5	5	38	30	38	31	5	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729370596	X	38263186	AAGAGATAGTCTTGGCTGATGCCTTTTATTCTATGAGTT	A	290	PASS	OTC	CCDS14247.1	r.?	-	-	Del	intronic	D	38263186	38263227	38	36	540.801	-	-	1	1	1	OTC|CCDS14247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTC|CCDS14247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	25	14	25	0	0	./.	5	5	4	1	28	33	29	37	5	5	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729370597	X	38263737	GA	G	420	PASS	OTC	CCDS14247.1	r.?	-	-	Del	intronic	D	38263737	38263741	1	14	378.38	-	-	3	1	1	OTC|CCDS14247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTC|CCDS14247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	1	6	1	8	18	51	18	51	1	8	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729373457	X	49527979	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	49527979	49527987	1	6	267.691	-	-	7	1	1	-	-	./.	0	0	0	0	9	19	9	20	0	0	./.	5	0	5	1	28	30	28	30	5	1	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729381288	X	90526386	TA	T	360	PASS	-	-	-	-	-	Del	-	D	90526386	90526388	1	7	323.036	-	-	1	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	6	0	10	0	33	23	33	23	10	0	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729381479	X	91485116	G	GATT	269	PASS	PCDH11X	CCDS14461.1	r.?	-	-	Ins	intronic	I	91485116	91485119	3	10	261.671	-	-	0	1	1	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	11	2	11	0	0	./.	1	4	1	4	4	41	4	41	1	4	1	1	1	1	1	1	1	1
2662780	PD17986a	PD17986b	2729388734	X	123791298	GA	G	360	PASS	ODZ1	CCDS14609.1	r.?	-	-	Del	intronic	D	123791298	123791308	1	15	324.842	-	-	9	1	1	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ1|CCDS14609.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	4	2	4	2	29	34	29	34	4	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711574302	1	4470577	CA	C	569	PASS	-	-	-	-	-	Del	-	D	4470577	4470580	1	35	525.805	-	-	2	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	6	4	7	5	25	22	25	22	7	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711580514	1	23615685	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	23615685	23615695	1	10	265.009	-	-	9	1	1	-	-	./.	0	0	0	0	9	19	9	20	0	0	./.	4	1	4	2	36	40	36	42	4	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711582215	1	28690086	GA	G	300	PASS	-	-	-	-	-	Del	-	D	28690086	28690093	1	10	266.816	-	-	6	1	-	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	1	4	3	7	23	19	23	19	3	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711587723	1	54941170	CG	C	449	PASS	-	-	-	-	-	Del	-	D	54941170	54941175	1	24	428.952	-	-	4	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	5	3	8	4	18	10	18	10	8	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711589676	1	64395094	TTC	T	269	PASS	ROR1	CCDS626.1	r.?	-	-	Del	intronic	D	64395094	64395113	2	10	261.999	-	-	9	1	1	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	4	1	4	1	13	20	13	20	4	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711594929	1	89099428	TTTGTAGTGTTGCCCAGGCTG	T	348	PASS	-	-	-	-	-	Del	-	D	89099428	89099449	20	49	643.127	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	6	6	6	4	13	9	13	11	6	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711599832	1	108160441	TC	T	300	PASS	VAV3	CCDS785.1	r.?	-	-	Del	intronic	D	108160441	108160443	1	12	269.224	-	-	1	1	1	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VAV3|CCDS785.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	3	5	16	24	16	24	3	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711601219	1	113931552	C	CGAA	1047	PASS	MAGI3	CCDS860.1	r.?	-	-	Ins	upstream	I	113931552	113931553	3	108	985.723	-	-	0	1	1	MAGI3|CCDS860.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	MAGI3|CCDS860.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	15	10	16	0	0	./.	11	8	12	11	26	18	27	18	12	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711601236	1	114074138	GTGT	G	538	PASS	MAGI3	CCDS860.1	r.?	-	-	Del	intronic	D	114074138	114074147	3	20	532.427	-	-	2	1	1	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	1	9	1	11	4	22	4	22	1	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711613782	1	173280190	GT	G	780	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173280190	173280196	1	54	699.982	-	-	5	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	8	5	8	6	28	23	28	23	8	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711615807	1	180418761	TTGA	T	840	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180418761	180418765	3	63	752.021	-	-	1	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	6	8	9	13	26	31	26	31	9	13	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711617539	1	186415428	AT	A	300	PASS	PDC	CCDS1370.1	r.?	-	-	Del	intronic	D	186415428	186415438	1	12	269.224	-	-	9	1	1	PDC|CCDS1370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDC|CCDS1370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	3	2	39	33	39	33	3	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711619636	1	192360981	TTG	T	929	PASS	-	-	-	-	-	Del	-	D	192360981	192360984	2	80	860.914	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	7	9	9	9	31	27	31	27	9	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711623876	1	205584356	T	TA	399	PASS	ELK4	CCDS1456.1	r.2953_2954insu	c.?	p.?	Ins	3'UTR variant	I	205584356	205584362	1	30	479.184	-	-	5	1	1	ELK4|CCDS1456.1|r.2953_2954insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ELK4|CCDS1456.1|r.2953_2954insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	10	16	10	16	0	0	./.	4	5	4	5	22	18	22	18	4	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711624001	1	205916019	CCA	C	269	PASS	SLC26A9	CCDS30990.1	r.?	-	-	Del	upstream	D	205916019	205916034	2	12	269.224	-	-	7	1	1	SLC26A9|CCDS30990.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SLC26A9|CCDS30990.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	2	3	30	26	30	26	2	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711627944	1	219325441	AT	A	1440	PASS	-	-	-	-	-	Del	-	D	219325441	219325447	1	168	1292.27	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	13	11	15	14	36	29	36	29	15	14	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711627955	1	219357145	AAC	A	480	PASS	LYPLAL1	CCDS1522.1	r.?	-	-	Del	intronic	D	219357145	219357151	2	21	430.758	-	-	2	1	1	LYPLAL1|CCDS1522.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LYPLAL1|CCDS1522.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	23	11	23	0	0	./.	6	2	9	3	32	25	32	25	9	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711632818	1	235818592	TC	T	300	PASS	GNG4	CCDS1607.1	r.?	-	-	Del	upstream	D	235818592	235818599	1	6	269.224	-	-	6	1	1	GNG4|CCDS1607.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GNG4|CCDS1607.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	0	10	0	10	0	0	./.	0	5	0	6	1	25	1	25	0	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711633507	1	237363264	TATA	T	600	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237363264	237363271	3	36	538.448	-	-	2	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	5	5	9	6	40	26	40	26	9	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711634585	1	240332946	A	AT	300	PASS	FMN2	CCDS31069.2	r.?	-	-	Ins	intronic	I	240332946	240332956	1	12	263.805	-	-	9	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	2	3	3	3	37	27	37	27	3	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711640326	10	7909257	C	CA	480	PASS	TAF3	CCDS41487.1	r.?	-	-	Ins	intronic	I	7909257	7909265	1	24	418.023	-	-	7	1	1	TAF3|CCDS41487.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TAF3|CCDS41487.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	16	7	16	0	0	./.	3	5	7	9	24	17	24	17	7	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711645577	10	27136553	T	TA	900	PASS	ABI1	CCDS7150.1	r.?	-	-	Ins	intronic	I	27136553	27136562	1	66	799.447	-	-	8	1	1	ABI1|CCDS7150.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABI1|CCDS7150.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	5	10	6	12	22	28	23	29	6	12	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711658369	10	76132490	GATATTT	G	319	PASS	ADK	CCDS7344.1	r.?	-	-	Del	intronic	D	76132490	76132497	6	36	593.446	-	-	1	1	1	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	8	3	8	5	17	16	17	16	8	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711659093	10	79795532	CGTT	C	958	PASS	RPS24	CCDS44443.1	r.?	-	-	Del	intronic	D	79795532	79795538	3	88	919.004	-	-	1	1	1	RPS24|CCDS44443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS24|CCDS44443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	10	7	13	7	22	20	22	20	13	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711659962	10	84148405	T	TA	540	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	84148405	84148412	1	30	479.909	-	-	6	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	4	5	5	10	13	28	14	28	5	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711666244	10	109965368	CA	C	1140	PASS	-	-	-	-	-	Del	-	D	109965368	109965370	1	104	1026.52	-	-	1	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	7	12	11	12	17	25	17	25	11	12	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711678615	11	18437915	CTAAGAAGCCTCAGATAATTAGGAAACATAATTAT	C	435	PASS	LDHC	CCDS7840.1	r.?	-	-	Del	intronic	D	18437915	18437951	34	72	811.074	-	-	1	1	1	LDHC|CCDS7840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDHC|CCDS7840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	8	7	5	4	32	20	35	23	8	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711686969	11	44311437	GT	G	629	PASS	ALX4	CCDS31468.1	r.?	-	-	Del	intronic	D	44311437	44311439	1	42	589.811	-	-	1	1	1	ALX4|CCDS31468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALX4|CCDS31468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	5	10	7	20	21	20	21	10	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711688571	11	49493451	TTCTA	T	400	PASS	-	-	-	-	-	Del	-	D	49493451	49493461	4	45	649.341	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	8	4	10	5	25	22	25	22	10	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711693836	11	70855179	AG	A	689	PASS	SHANK2	ENST00000338508	r.?	-	-	Del	intronic	D	70855179	70855181	1	49	644.524	-	-	1	1	1	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHANK2|ENST00000338508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	6	6	11	9	21	19	21	19	11	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711696070	11	80753284	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	80753284	80753290	1	70	802.043	-	-	5	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	6	9	6	10	15	21	15	22	6	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711696532	11	82260873	GACA	G	269	PASS	-	-	-	-	-	Del	-	D	82260873	82260880	3	6	270.559	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	0	5	1	6	16	22	16	22	1	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711704100	11	112043298	CTT	C	840	PASS	BCO2	CCDS41716.1	r.?	-	-	Del	upstream	D	112043298	112043305	2	60	756.962	-	-	6	1	1	BCO2|CCDS41716.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BCO2|CCDS41716.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	10	13	10	0	0	./.	9	5	12	10	19	15	19	15	12	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711714894	12	13623012	T	TTATATA	261	PASS	-	-	-	-	-	Ins	-	I	13623012	13623029	6	18	452.189	-	-	8	1	1	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	1	8	2	9	6	19	6	19	2	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711719028	12	27015561	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	27015561	27015576	2	15	324.739	-	-	7	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	2	4	2	4	27	24	27	24	2	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711731315	12	72956847	ATAT	A	600	PASS	TRHDE	CCDS9004.1	r.?	-	-	Del	intronic	D	72956847	72956852	3	35	541.232	-	-	1	1	1	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRHDE|CCDS9004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	6	10	10	37	32	37	32	10	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711733231	12	80477393	GC	G	471	PASS	-	-	-	-	-	Del	-	D	80477393	80477396	1	25	432.985	-	-	2	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	4	4	5	5	21	20	21	20	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711738169	12	97103935	CT	C	540	PASS	C12orf63	CCDS9062.1	r.?	-	-	Del	intronic	D	97103935	97103937	1	30	485.904	-	-	1	1	1	C12orf63|CCDS9062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf63|CCDS9062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	5	7	6	15	19	15	19	7	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711742602	12	113136900	A	AT	269	PASS	MIR1302-1	ENST00000408633	r.?	-	-	Ins	upstream	I	113136900	113136907	1	10	266.401	-	-	6	1	1	MIR1302-1|ENST00000408633|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	MIR1302-1|ENST00000408633|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	14	9	14	9	0	0	./.	4	1	6	3	16	8	17	8	6	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711746594	12	125642069	TG	T	900	PASS	-	-	-	-	-	Del	-	D	125642069	125642072	1	72	810.643	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	7	8	12	9	37	20	37	20	12	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711752956	13	29504249	AATGT	A	269	PASS	-	-	-	-	-	Del	-	D	29504249	29504255	4	10	269.143	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	1	4	1	6	9	16	9	16	1	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711753521	13	31181462	AAGG	A	300	PASS	HMGB1	CCDS9335.1	r.?	-	-	Del	intronic	D	31181462	31181468	3	12	266.132	-	-	1	1	1	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	3	2	16	18	16	18	3	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711768871	13	89781596	AT	A	420	PASS	-	-	-	-	-	Del	-	D	89781596	89781604	1	20	379.569	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	3	5	4	11	16	11	16	5	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711769682	13	92449347	T	TA	360	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	92449347	92449357	1	12	322.249	-	-	9	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	1	5	5	20	19	20	19	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711777067	14	22570811	G	GAC	360	PASS	TRAC	ENST00000446346	r.?	-	-	Ins	intronic	I	22570811	22570822	2	7	318.489	-	-	5	1	-	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	5	14	5	0	0	./.	0	6	0	1	22	29	22	29	0	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711777566	14	23644423	GTGTT	G	480	PASS	SLC7A8	CCDS9590.1	r.?	-	-	Del	intronic	D	23644423	23644444	4	16	434.285	-	-	5	1	-	SLC7A8|CCDS9590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC7A8|CCDS9590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	7	1	9	3	30	24	30	24	9	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711778845	14	28063343	C	CT	509	PASS	-	-	-	-	-	Ins	-	I	28063343	28063351	1	30	483.152	-	-	7	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	5	6	5	31	28	32	28	6	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711796849	14	87330743	AT	A	420	PASS	-	-	-	-	-	Del	-	D	87330743	87330745	1	20	379.398	-	-	1	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	3	4	8	7	28	23	28	23	8	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711808754	15	37196393	G	GA	300	PASS	MEIS2	CCDS45217.1	r.?	-	-	Ins	intronic	I	37196393	37196403	1	12	266.022	-	-	9	1	1	MEIS2|CCDS45217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MEIS2|CCDS45217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	2	37	36	37	37	3	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711822814	15	81582241	ACAGAAGGAAGAAATGGAGG	A	464	PASS	IL16	CCDS42069.1	r.?	-	-	Del	intronic	D	81582241	81582262	19	56	868.608	-	-	1	1	1	IL16|CCDS42069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL16|ENST00000394655|r.1709-3_1724del19|c.1333-3_1348del19|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	17	3	17	3	0	0	./.	13	3	13	3	36	17	36	17	13	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711827758	15	98010067	A	AAG	361	PASS	-	-	-	-	-	Ins	-	I	98010067	98010079	2	8	368.577	-	-	5	1	-	-	-	./.	0	0	0	0	12	6	13	6	0	0	./.	7	0	0	1	42	20	43	20	7	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711839144	16	26385591	GT	G	300	PASS	-	-	-	-	-	Del	-	D	26385591	26385593	1	6	269.513	-	-	1	1	-	-	-	./.	0	0	0	0	24	8	24	8	0	0	./.	5	0	7	0	50	37	50	37	7	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711842415	16	33541326	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	33541326	33541331	1	8	375.632	-	-	4	1	1	-	-	./.	0	0	0	0	22	33	22	33	0	0	./.	0	7	8	9	70	110	70	110	8	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711848022	16	64039604	AT	A	420	PASS	-	-	-	-	-	Del	-	D	64039604	64039607	1	20	379.847	-	-	2	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	4	3	5	10	22	20	22	20	5	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711858405	17	13376847	TA	T	720	PASS	-	-	-	-	-	Del	-	D	13376847	13376857	1	33	651.11	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	10	10	13	20	30	20	30	10	13	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711863033	17	32159483	CT	C	449	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	32159483	32159486	1	25	434.474	-	-	2	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	4	5	5	24	25	24	25	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711864195	17	36552121	GA	G	420	PASS	SOCS7	CCDS32637.1	r.1770delA	c.1647delA	p.K550fs*15	Del	frameshift	D	36552121	36552125	1	18	375.951	-	-	3	1	1	SOCS7|CCDS32637.1|r.1770delA|c.1647delA|p.K550fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SOCS7|CCDS32637.1|r.1770delA|c.1647delA|p.K550fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	10	8	10	0	0	./.	5	2	6	2	30	26	30	26	6	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711864263	17	36797117	A	AAC	418	PASS	-	-	-	-	-	Ins	-	I	36797117	36797119	2	9	397.749	-	-	0	1	-	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	0	8	0	1	24	16	24	19	0	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711865905	17	42222599	T	TG	629	PASS	C17orf53	CCDS11477.1	r.217_218insg	c.32_33insG	p.E12fs*5	Ins	frameshift	I	42222599	42222602	1	42	590.78	-	-	2	1	1	C17orf53|CCDS11477.1|r.217_218insg|c.32_33insG|p.E12fs*5|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	C17orf53|CCDS11477.1|r.217_218insg|c.32_33insG|p.E12fs*5|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	15	13	15	13	0	0	./.	6	5	8	5	30	28	31	28	8	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711869073	17	51443745	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	51443745	51443748	1	25	429.658	-	-	2	1	1	-	-	./.	0	0	0	0	17	11	18	11	0	0	./.	4	4	6	6	27	24	27	24	6	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711871143	17	59276547	CTTCT	C	389	PASS	BCAS3	CCDS45749.1	r.?	-	-	Del	intronic	D	59276547	59276552	4	18	380.165	-	-	1	1	1	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	5	2	5	3	21	36	21	36	5	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711876854	17	76647900	C	CT	956	PASS	-	-	-	-	-	Ins	-	I	76647900	76647905	1	96	966.73	-	-	4	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	11	7	12	9	28	24	28	24	12	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711877664	17	79369710	TCTGAGCG	T	464	PASS	BAHCC1	ENST00000436173	r.?	-	-	Del	upstream	D	79369710	79369720	7	81	862.326	-	-	1	1	1	BAHCC1|ENST00000436173|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BAHCC1|ENST00000436173|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	4	14	4	0	0	./.	8	8	9	9	26	18	26	18	9	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711881184	18	8028002	C	CT	600	PASS	PTPRM	CCDS11840.1	r.?	-	-	Ins	intronic	I	8028002	8028011	1	35	536.784	-	-	8	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	6	5	9	31	27	31	27	5	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711882792	18	13345975	CTTT	C	362	PASS	C18orf1	CCDS32793.1	r.?	-	-	Del	intronic	D	13345975	13345979	3	48	651.365	-	-	3	1	1	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	5	7	8	8	31	31	31	31	8	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711883267	18	14677422	C	CA	317	PASS	-	-	-	-	-	Ins	-	I	14677422	14677432	1	20	366.115	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	18	0	0	./.	4	3	9	5	34	31	34	31	9	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711886389	18	27592698	CA	C	420	PASS	-	-	-	-	-	Del	-	D	27592698	27592708	1	20	379.963	-	-	9	1	1	-	-	./.	0	0	0	0	1	15	1	15	0	0	./.	4	3	5	7	13	30	13	30	5	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711887633	18	32027682	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	32027682	32027700	2	12	270.198	-	-	8	1	-	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	5	5	24	37	24	37	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711896191	18	61358431	AG	A	900	PASS	ENSG00000234045	ENST00000447812	r.?	-	-	Del	intronic	D	61358431	61358434	1	72	812.4	-	-	2	1	1	ENSG00000234045|ENST00000447812|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000234045|ENST00000447812|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	7	18	7	0	0	./.	8	7	9	8	32	24	32	24	9	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711900845	18	75403449	TC	T	780	PASS	-	-	-	-	-	Del	-	D	75403449	75403455	1	14	705.645	-	-	5	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	13	0	15	1	42	11	42	11	15	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711905606	19	11836341	TAAC	T	689	PASS	ZNF823	CCDS45981.1	r.?	-	-	Del	intronic	D	11836341	11836346	3	49	650.484	-	-	1	1	1	ZNF823|CCDS45981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF823|CCDS45981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	6	6	6	7	27	32	27	32	6	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711907985	19	19713483	A	AT	480	PASS	PBX4	CCDS12406.1	r.?	-	-	Ins	intronic	I	19713483	19713485	1	24	429.643	-	-	1	1	1	PBX4|CCDS12406.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX4|CCDS12406.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	3	8	7	27	21	27	21	8	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711912580	19	36481713	G	GAGGAGGA	300	PASS	SDHAF1	CCDS32999.1	r.?	-	-	Ins	upstream	I	36481713	36481737	7	6	250.465	-	-	3	1	1	SDHAF1|CCDS32999.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SDHAF1|CCDS32999.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	5	13	5	0	0	./.	5	0	0	2	41	22	42	23	5	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711917710	19	50161902	CCT	C	869	PASS	SCAF1	CCDS33074.1	r.?	-	-	Del	downstream	D	50161902	50161905	2	70	810.998	-	-	1	1	1	SCAF1|CCDS33074.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	SCAF1|CCDS33074.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	13	11	13	11	0	0	./.	6	9	7	10	100	98	100	98	7	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711917864	19	50382864	T	TG	300	PASS	AKT1S1	CCDS12784.1	r.?	-	-	Ins	upstream	I	50382864	50382865	1	6	259.496	-	-	0	1	-	AKT1S1|CCDS12784.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TBC1D17|CCDS12785.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	20	8	20	0	0	./.	0	5	14	8	93	135	93	135	14	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711917907	19	50442823	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	50442823	50442824	1	16	315.609	-	-	0	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	5	5	64	51	64	52	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711918035	19	50602013	TA	T	667	PASS	-	-	-	-	-	Del	-	D	50602013	50602023	1	24	1249.07	-	-	9	1	1	-	-	./.	0	0	0	0	21	1	22	1	0	0	./.	23	0	28	0	395	5	395	5	28	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711918528	19	51910628	AG	A	300	PASS	SIGLEC10	CCDS12832.1	r.?	-	-	Del	downstream	D	51910628	51910630	1	6	260.7	-	-	1	1	-	SIGLEC10|CCDS12832.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SIGLEC10|CCDS12832.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	6	9	6	0	0	./.	5	0	21	0	90	60	90	60	21	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711921843	2	724133	TC	T	840	PASS	-	-	-	-	-	Del	-	D	724133	724136	1	55	753.78	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	10	11	15	28	31	28	31	11	15	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711925431	2	14285436	AT	A	720	PASS	-	-	-	-	-	Del	-	D	14285436	14285442	1	45	646.613	-	-	5	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	8	4	9	8	31	20	31	20	9	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711925820	2	15666685	T	TA	420	PASS	NBAS	CCDS1685.1	r.?	-	-	Ins	intronic	I	15666685	15666695	1	20	372.976	-	-	9	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	15	5	0	0	./.	4	3	9	7	32	29	32	29	9	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711928459	2	26003945	AG	A	360	PASS	ASXL2	ENST00000435504	r.?	-	-	Del	intronic	D	26003945	26003947	1	7	314.276	-	-	1	1	-	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	6	0	10	0	30	11	30	11	10	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711935494	2	50723429	GT	G	360	PASS	NRXN1	CCDS46282.1	r.?	-	-	Del	intronic	D	50723429	50723434	1	15	323.306	-	-	4	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	4	2	5	4	31	26	31	26	5	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711938345	2	62228765	G	GA	480	PASS	COMMD1	CCDS1869.1	r.?	-	-	Ins	intronic	I	62228765	62228775	1	25	425.657	-	-	9	1	1	COMMD1|CCDS1869.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COMMD1|CCDS1869.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	4	4	5	4	37	33	37	33	5	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711943485	2	81993621	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	81993621	81993623	1	36	584.902	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	8	7	11	22	29	23	29	7	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711943964	2	84083938	C	CTT	600	PASS	-	-	-	-	-	Ins	-	I	84083938	84083942	2	35	526.201	-	-	3	1	1	-	-	./.	0	0	0	0	18	13	20	13	0	0	./.	6	4	6	6	34	22	34	22	6	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711947378	2	99034984	T	TG	1140	PASS	-	-	-	-	-	Ins	-	I	99034984	99034993	1	110	1002.73	-	-	8	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	9	10	12	12	35	28	35	28	13	13	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711951193	2	114709903	C	CTT	300	PASS	ACTR3	CCDS33277.1	r.?	-	-	Ins	intronic	I	114709903	114709905	2	10	262.799	-	-	1	1	1	ACTR3|CCDS33277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACTR3|CCDS33277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	1	4	1	5	20	25	20	26	1	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711951356	2	115481607	A	AT	1260	PASS	DPP10	CCDS46400.1	r.?	-	-	Ins	intronic	I	115481607	115481614	1	130	1116.52	-	-	6	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	12	9	15	13	41	25	42	25	15	13	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711957969	2	139921902	CG	C	360	PASS	-	-	-	-	-	Del	-	D	139921902	139921909	1	15	323.306	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	6	3	25	21	25	21	6	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711964629	2	165283134	C	CA	989	PASS	-	-	-	-	-	Ins	-	I	165283134	165283142	1	60	901.585	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	14	3	20	4	42	22	42	23	20	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711973773	2	198018044	C	CCAAACTT	290	PASS	ANKRD44	CCDS33355.1	r.?	-	-	Ins	intronic	I	198018044	198018053	7	27	496.7	-	-	1	1	1	ANKRD44|CCDS33355.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD44|CCDS33355.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	8	2	10	2	41	18	41	18	10	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711978231	2	213828598	GT	G	697	PASS	-	-	-	-	-	Del	-	D	213828598	213828602	1	49	646.613	-	-	3	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	6	6	8	11	29	26	29	26	8	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711988811	20	7691122	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	7691122	7691132	1	10	257.635	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	1	4	1	34	24	35	25	4	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711989106	20	8788285	G	GA	509	PASS	PLCB1	CCDS13103.1	r.?	-	-	Ins	intronic	I	8788285	8788292	1	30	482.527	-	-	6	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	4	5	5	9	11	21	11	22	5	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2711997235	20	39645533	AT	A	300	PASS	-	-	-	-	-	Del	-	D	39645533	39645535	1	6	265.462	-	-	1	1	1	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	5	0	13	0	50	27	50	27	13	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712003857	20	60784817	T	TC	2069	PASS	-	-	-	-	-	Ins	-	I	60784817	60784822	1	322	1872.68	-	-	4	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	13	22	20	32	40	54	40	55	20	32	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712018661	22	18408428	A	AT	360	PASS	ENSG00000093100	CCDS46659.1	r.?	-	-	Ins	intronic	I	18408428	18408438	1	15	324.311	-	-	9	1	1	ENSG00000093100|CCDS46659.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000093100|CCDS46659.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	14	15	0	0	./.	2	4	8	8	28	35	28	36	8	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712023483	22	33458042	TG	T	300	PASS	SYN3	CCDS13908.1	r.?	-	-	Del	upstream	D	33458042	33458044	1	6	251.595	-	-	1	1	1	SYN3|CCDS13908.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SYN3|CCDS13908.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	13	10	13	0	0	./.	5	0	9	0	24	30	24	30	9	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712026083	22	41603098	TAGAGCCAGGATTCAAACTC	T	290	PASS	L3MBTL2	CCDS14011.1	r.?	-	-	Del	intronic	D	41603098	41603120	19	32	546.539	-	-	1	1	1	L3MBTL2|CCDS14011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	L3MBTL2|CCDS14011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	7	4	7	21	30	21	30	4	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712029224	3	713530	CTG	C	449	PASS	-	-	-	-	-	Del	-	D	713530	713535	2	25	429.394	-	-	2	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	4	6	6	31	27	31	27	6	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712050457	3	76434935	C	CA	300	PASS	ROBO2	ENST00000487694	r.?	-	-	Ins	intronic	I	76434935	76434944	1	12	266.264	-	-	8	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	2	3	4	3	22	34	22	35	4	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712052627	3	85301972	GGTCAGTA	G	319	PASS	CADM2	ENST00000383699	r.?	-	-	Del	intronic	D	85301972	85301983	7	42	593.728	-	-	1	1	1	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	5	6	7	7	28	23	28	23	7	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712052818	3	85795601	CA	C	1380	PASS	CADM2	CCDS33792.1	r.?	-	-	Del	intronic	D	85795601	85795607	1	126	1240.23	-	-	5	1	1	CADM2|CCDS33792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM2|CCDS33792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	6	17	10	24	26	41	26	41	10	24	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712054466	3	95061474	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	95061474	95061484	1	28	479.757	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	6	3	10	3	34	29	34	29	10	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712054853	3	96228908	TA	T	480	PASS	-	-	-	-	-	Del	-	D	96228908	96228918	1	24	431.802	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	3	7	8	21	35	21	35	7	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712055287	3	98515897	A	AC	300	PASS	DCBLD2	CCDS46878.1	r.5009_5010insg	c.?	p.?	Ins	3'UTR variant	I	98515897	98515898	1	10	262.652	-	-	0	1	-	DCBLD2|CCDS46878.1|r.5009_5010insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	DCBLD2|CCDS46878.1|r.5009_5010insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	8	13	8	0	0	./.	1	4	1	6	20	30	20	30	1	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712058659	3	109872239	TA	T	600	PASS	-	-	-	-	-	Del	-	D	109872239	109872248	1	35	539.753	-	-	8	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	4	6	6	8	24	25	24	25	6	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712064090	3	130268403	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	130268403	130268413	1	10	266.264	-	-	9	1	1	-	-	./.	0	0	0	0	12	18	13	18	0	0	./.	1	4	1	4	29	31	30	31	1	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712066361	3	139022365	GA	G	660	PASS	MRPS22	CCDS3107.1	r.?	-	-	Del	intronic	D	139022365	139022367	1	42	591.922	-	-	1	1	1	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	6	7	8	23	15	23	15	7	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712067422	3	142953800	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	142953800	142953809	1	24	480.359	-	-	8	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	7	2	9	2	25	22	25	23	9	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712071650	3	158749412	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	158749412	158749415	1	7	317.229	-	-	2	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	0	8	2	35	28	35	29	8	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712075816	3	174925274	A	AT	540	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Ins	intronic	I	174925274	174925280	1	24	480.359	-	-	5	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	23	18	23	0	0	./.	2	7	6	10	19	24	19	25	6	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712082969	4	1111849	TG	T	720	PASS	RNF212	CCDS3345.1	r.?	-	-	Del	upstream	D	1111849	1111851	1	45	646.083	-	-	1	1	1	RNF212|CCDS3345.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RNF212|CCDS3345.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	9	12	9	0	0	./.	4	8	5	10	23	34	23	34	5	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712089943	4	23994724	CA	C	625	PASS	-	-	-	-	-	Del	-	D	23994724	23994733	1	54	700.575	-	-	8	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	5	8	10	8	37	31	37	31	10	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712112462	4	95209930	CACTA	C	896	PASS	SMARCAD1	CCDS47101.1	r.?	-	-	Del	intronic	D	95209930	95209939	4	88	914.932	-	-	2	1	1	SMARCAD1|CCDS47101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCAD1|CCDS47101.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	10	7	14	9	41	27	41	27	14	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712114983	4	104129980	ATTG	A	600	PASS	-	-	-	-	-	Del	-	D	104129980	104129986	3	35	538.904	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	6	4	9	4	31	27	31	27	9	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712120681	4	123315020	A	AT	780	PASS	ADAD1	CCDS34058.1	r.?	-	-	Ins	intronic	I	123315020	123315030	1	56	690.34	-	-	9	1	1	ADAD1|CCDS34058.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAD1|CCDS34058.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	14	0	0	./.	7	6	9	10	36	32	36	32	9	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712124362	4	135485769	GT	G	660	PASS	-	-	-	-	-	Del	-	D	135485769	135485775	1	42	592.794	-	-	5	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	5	6	9	8	21	24	21	24	9	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712125261	4	138432824	TC	T	300	PASS	-	-	-	-	-	Del	-	D	138432824	138432827	1	12	268.85	-	-	2	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	3	2	3	3	26	24	26	25	3	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712125880	4	140299909	GAA	G	780	PASS	NAA15	CCDS43270.1	r.2380_2381delAA	c.2057_2058delAA	p.K687fs*15	Del	frameshift	D	140299909	140299914	2	54	700.575	-	-	4	1	1	NAA15|CCDS43270.1|r.2380_2381delAA|c.2057_2058delAA|p.K687fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	NAA15|CCDS43270.1|r.2380_2381delAA|c.2057_2058delAA|p.K687fs*15|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	10	10	10	0	0	./.	5	8	9	9	26	37	26	37	9	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712127290	4	145466486	ATCACAGATCAACACTAATTCATT	A	435	PASS	-	-	-	-	-	Del	-	D	145466486	145466511	23	66	808.356	-	-	1	1	1	-	-	./.	0	0	0	0	14	4	14	4	0	0	./.	5	10	3	11	32	29	34	29	5	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712128232	4	148814214	A	AC	300	PASS	ARHGAP10	CCDS34075.1	r.?	-	-	Ins	intronic	I	148814214	148814215	1	12	263.431	-	-	0	1	1	ARHGAP10|CCDS34075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP10|CCDS34075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	4	14	21	14	21	2	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712131293	4	159124200	C	CCT	300	PASS	TMEM144	ENST00000505189	r.?	-	-	Ins	intronic	I	159124200	159124201	2	12	255.605	-	-	0	1	-	TMEM144|ENST00000505189|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMEM144|ENST00000505189|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	2	3	1	1	27	20	28	20	3	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712132443	4	162435639	G	GA	300	PASS	FSTL5	CCDS3802.1	r.?	-	-	Ins	intronic	I	162435639	162435645	1	12	266.442	-	-	5	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	4	29	28	30	29	2	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712133964	4	166677467	TAGA	TC	689	PASS	-	-	-	-	-	Complex	-	DI	166677468	166677470	3	33	0	-	-	0	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	10	2	0	0	34	16	34	16	10	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712136109	4	173366004	G	GA	300	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Ins	intronic	I	173366004	173366014	1	12	266.442	-	-	9	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	2	3	24	21	24	21	2	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712142407	4	190122128	TGG	T	1200	PASS	-	-	-	-	-	Del	-	D	190122128	190122131	2	117	1074.8	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	12	8	12	9	35	34	35	34	12	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712143838	5	164036	GTGTTAGGGGTTAGAAGGCGCAC	G	377	PASS	PLEKHG4B	CCDS34124.1	r.?	-	-	Del	intronic	D	164036	164059	22	54	696.972	-	-	1	1	1	PLEKHG4B|CCDS34124.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHG4B|CCDS34124.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	8	5	7	5	30	21	31	21	8	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712146432	5	8039179	TA	T	540	PASS	-	-	-	-	-	Del	-	D	8039179	8039184	1	28	484.047	-	-	4	1	-	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	6	3	10	8	30	24	30	24	10	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712148976	5	16545338	GA	G	780	PASS	FAM134B	CCDS43304.1	r.?	-	-	Del	intronic	D	16545338	16545343	1	50	700.584	-	-	4	1	1	FAM134B|CCDS43304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM134B|CCDS43304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	9	6	14	18	39	18	39	6	14	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712154824	5	33728128	A	AT	1020	PASS	ADAMTS12	ENST00000504830	r.?	-	-	Ins	intronic	I	33728128	33728133	1	90	907.488	-	-	4	1	1	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	8	9	12	10	24	31	24	31	12	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712155355	5	35122332	TTTC	T	269	PASS	PRLR	CCDS3909.1	r.?	-	-	Del	intronic	D	35122332	35122338	3	6	260.888	-	-	1	1	1	PRLR|CCDS3909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRLR|CCDS3909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	5	0	9	1	45	30	45	30	9	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712157416	5	42323530	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	42323530	42323540	1	10	265.102	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	4	1	32	30	32	31	4	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712160113	5	54592929	A	AT	600	PASS	DHX29	CCDS34158.1	r.?	-	-	Ins	intronic	I	54592929	54592934	1	32	533.816	-	-	4	1	1	DHX29|CCDS34158.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DHX29|CCDS34158.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	7	3	10	3	33	19	34	19	10	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712162517	5	62525501	TA	T	1039	PASS	-	-	-	-	-	Del	-	D	62525501	62525503	1	104	1025.69	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	12	7	12	11	30	40	30	40	12	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712163008	5	64342623	GC	G	569	PASS	-	-	-	-	-	Del	-	D	64342623	64342628	1	35	534.418	-	-	4	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	6	4	11	9	40	23	40	23	11	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712170492	5	90721615	GTCTT	G	298	PASS	-	-	-	-	-	Del	-	D	90721615	90721626	4	15	323.902	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	4	3	6	31	28	31	28	3	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712172831	5	99339947	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	99339947	99339952	2	10	269.918	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	1	5	3	35	30	35	30	5	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712176975	5	114414524	CA	C	420	PASS	-	-	-	-	-	Del	-	D	114414524	114414528	1	20	374.876	-	-	3	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	3	4	5	8	38	24	38	24	5	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712181864	5	131832260	T	TATCTCACCCTGCGAGATG	377	PASS	-	-	-	-	-	Ins	-	I	131832260	131832279	18	44	559.702	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	10	3	3	0	32	13	39	16	10	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712183795	5	139186986	TCTC	T	389	PASS	PSD2	CCDS4216.1	r.?	-	-	Del	intronic	D	139186986	139186996	3	8	376.682	-	-	3	1	1	PSD2|CCDS4216.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PSD2|CCDS4216.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	0	7	0	8	14	30	14	30	0	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712191757	5	168602908	AC	A	480	PASS	SLIT3	CCDS4369.1	r.?	-	-	Del	intronic	D	168602908	168602910	1	21	430.665	-	-	1	1	1	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT3|CCDS4369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	6	2	11	3	24	20	24	20	11	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712195625	5	180388393	AT	A	720	PASS	-	-	-	-	-	Del	-	D	180388393	180388402	1	48	647.804	-	-	8	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	5	7	10	8	25	36	25	36	10	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712216628	6	66175210	A	AT	1020	PASS	EYS	CCDS47445.1	r.?	-	-	Ins	intronic	I	66175210	66175219	1	88	907.019	-	-	8	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	7	10	7	10	21	30	21	30	7	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712219379	6	75421853	GAA	G	420	PASS	-	-	-	-	-	Del	-	D	75421853	75421858	2	18	378.189	-	-	4	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	5	2	7	4	38	33	38	33	7	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712232775	6	127000928	GA	G	759	PASS	-	-	-	-	-	Del	-	D	127000928	127000933	1	44	701.146	-	-	4	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	10	3	13	4	34	13	34	13	13	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712232918	6	128193418	T	TA	900	PASS	THEMIS	CCDS34534.1	r.?	-	-	Ins	intronic	I	128193418	128193425	1	72	794.751	-	-	6	1	1	THEMIS|CCDS34534.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THEMIS|CCDS34534.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	8	7	10	11	31	23	31	23	10	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712233864	6	132716302	G	GA	660	PASS	MOXD1	CCDS5152.2	r.?	-	-	Ins	intronic	I	132716302	132716311	1	42	586.47	-	-	8	1	1	MOXD1|CCDS5152.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MOXD1|CCDS5152.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	15	0	0	./.	6	5	9	7	25	25	25	25	9	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712237546	6	150354727	GT	G	300	PASS	-	-	-	-	-	Del	-	D	150354727	150354729	1	6	258.094	-	-	1	1	-	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	0	5	0	16	14	16	14	5	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712246630	7	12728977	GAGTA	G	960	PASS	ARL4A	CCDS5359.1	r.1581_1584delAGUA	c.?	p.?	Del	3'UTR variant	D	12728977	12728986	4	99	959.899	-	-	2	1	1	ARL4A|CCDS5359.1|r.1581_1584delAGUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ARL4A|CCDS5359.1|r.1581_1584delAGUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	12	6	12	0	0	./.	10	8	14	10	42	31	42	31	14	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712249440	7	21441033	CCAAAGT	C	290	PASS	-	-	-	-	-	Del	-	D	21441033	21441040	6	36	539.967	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	5	5	5	31	22	31	22	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712251572	7	27979923	GT	G	300	PASS	JAZF1	CCDS5416.1	r.?	-	-	Del	intronic	D	27979923	27979925	1	6	269.381	-	-	1	1	1	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	5	0	6	0	36	24	36	24	6	0	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712259661	7	53996920	CTGTT	C	1347	PASS	-	-	-	-	-	Del	-	D	53996920	53996927	4	153	1286.89	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	8	16	9	17	22	32	22	32	9	17	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712262614	7	63529685	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	63529685	63529691	1	21	426.555	-	-	5	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	6	3	7	26	40	27	40	3	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712270136	7	85476670	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	85476670	85476688	2	12	269.983	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	3	33	29	33	29	2	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712270549	7	86852490	A	AACTT	898	PASS	C7orf23	CCDS5602.1	r.?	-	-	Ins	upstream	I	86852490	86852498	4	77	825.415	-	-	1	1	1	C7orf23|CCDS5602.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C7orf23|CCDS5602.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	22	15	22	15	0	0	./.	6	10	7	10	35	26	35	26	7	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712270576	7	86968733	TTAAC	T	958	PASS	-	-	-	-	-	Del	-	D	86968733	86968741	4	88	917.944	-	-	1	1	1	-	-	./.	0	0	0	0	8	21	8	21	0	0	./.	7	10	8	12	23	33	23	33	8	12	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712273044	7	96080087	CT	C	449	PASS	-	-	-	-	-	Del	-	D	96080087	96080089	1	24	430.769	-	-	1	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	5	3	9	7	23	22	23	22	9	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712273312	7	96928413	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	96928413	96928423	1	12	266.973	-	-	9	1	1	-	-	./.	0	0	0	0	15	20	15	21	0	0	./.	3	2	7	7	22	28	24	28	7	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712277913	7	112110592	TTGCGGGAAGGTTTGTTGTTTTGTTTTGTTCTAGATACTAGAGACAATTTATGGAGAAGGAACCTGTGGAGAAAGGAGCATCTGAAAATGTAGTCTGTTCTTAATATCCATGAGGCATTGGTTCCAGGATCCCCCTCAGATACCAAAATTTGAGTATTCAAGTCCCTGATATAAAATGGCATAGTATTTGCATATAACCTATGCACGTATACTTTAAATCATCTGTAGATTACTTATAATACCTAATACAATGTAAGTGCTATGTAAATAGTTGTTATACTTTATTGTTTAGGGAATAGTGGAAAGAAAGAATAGTCTATACATGTTCAGTATAGTTGCAATTTTTTTCTGAATATTTTCAGTCCATGGTTGGTTGAATCCGTGATGCAGAACCAACCAGATATGGAGGATTGACTATATATGTAAAAGATTGAGATTAACCTTGAATTGTGGAGGGACAGAGG	T	319	PASS	IFRD1	CCDS34736.1	r.?	-	-	Del	intronic	D	112110592	112111057	463	42	593.964	-	-	1	1	1	IFRD1|CCDS34736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFRD1|CCDS34736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	5	0	0	12	18	18	23	6	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712278088	7	112672634	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	112672634	112672643	1	64	745.116	-	-	8	1	1	-	-	./.	0	0	0	0	9	19	10	19	0	0	./.	7	7	12	11	36	46	36	48	12	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712278816	7	115419391	ATG	A	1320	PASS	-	-	-	-	-	Del	-	D	115419391	115419397	2	135	1187.93	-	-	2	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	14	8	16	12	34	25	34	25	16	12	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712279806	7	119396482	T	TAC	749	PASS	-	-	-	-	-	Ins	-	I	119396482	119396500	2	50	683.895	-	-	8	1	1	-	-	./.	0	0	0	0	19	16	19	17	0	0	./.	4	9	6	10	32	38	32	39	6	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712280390	7	121797041	TG	T	480	PASS	-	-	-	-	-	Del	-	D	121797041	121797048	1	25	430.167	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	4	7	5	18	17	18	17	7	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712281671	7	125775612	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	125775612	125775613	1	20	533.344	-	-	0	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	9	1	10	2	32	19	32	19	10	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712282880	7	129439831	TG	T	360	PASS	-	-	-	-	-	Del	-	D	129439831	129439834	1	15	320.97	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	6	7	16	20	16	20	6	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712286768	7	141354211	TTTTA	T	1163	PASS	AGK	CCDS5865.1	r.3017_3020delUUUA	c.?	p.?	Del	3'UTR variant	D	141354211	141354216	4	156	1241.92	-	-	1	1	1	AGK|CCDS5865.1|r.3017_3020delUUUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AGK|CCDS5865.1|r.3017_3020delUUUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	20	13	20	13	0	0	./.	12	11	15	13	36	33	36	33	15	13	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712293760	8	3730896	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	3730896	3730906	1	42	580.229	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	6	5	5	24	35	24	35	5	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712293788	8	3777378	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	3777378	3777385	1	42	588.055	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	6	6	11	17	29	17	29	6	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712293955	8	4136995	G	GT	807	PASS	-	-	-	-	-	Ins	-	I	4136995	4137002	1	72	802.715	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	7	8	8	10	35	30	35	31	8	10	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712299308	8	21423484	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	21423484	21423503	2	12	270.582	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	3	3	3	23	21	23	21	3	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712303764	8	36980487	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	36980487	36980496	1	20	369.784	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	17	12	0	0	./.	3	4	4	5	39	39	40	39	4	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712304350	8	39298494	AT	A	660	PASS	-	-	-	-	-	Del	-	D	39298494	39298499	1	40	594.678	-	-	4	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	7	6	9	23	22	23	22	6	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712308701	8	58953941	TC	T	480	PASS	FAM110B	CCDS6170.1	r.?	-	-	Del	intronic	D	58953941	58953944	1	24	432.931	-	-	2	1	1	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM110B|CCDS6170.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	3	8	8	25	22	25	22	8	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712313569	8	79015311	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	79015311	79015318	1	20	373.998	-	-	6	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	3	6	3	23	23	23	23	6	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712314485	8	82858674	C	CTG	360	PASS	-	-	-	-	-	Ins	-	I	82858674	82858689	2	16	317.473	-	-	7	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	6	3	28	23	30	23	6	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712314639	8	83431459	CTTTTTGCCTCTTTATTTCAATTCACCCTCCTTTTCCTTTATAAAAACACGTGTCA	C	319	PASS	-	-	-	-	-	Del	-	D	83431459	83431517	55	36	595.28	-	-	1	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	8	3	0	0	18	19	26	22	8	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712317299	8	94336032	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	94336032	94336036	2	10	270.582	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	4	1	5	1	33	20	33	20	5	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712319083	8	100541012	TTTCA	T	269	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100541012	100541021	4	12	270.582	-	-	2	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	3	2	5	5	11	26	11	26	5	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712321307	8	108746063	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	108746063	108746065	1	50	695.686	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	9	4	11	9	20	27	20	28	11	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712324252	8	120091944	C	CA	660	PASS	COLEC10	CCDS6327.1	r.?	-	-	Ins	intronic	I	120091944	120091952	1	30	580.229	-	-	7	1	1	COLEC10|CCDS6327.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COLEC10|CCDS6327.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	10	8	0	0	./.	9	2	15	5	38	14	38	14	15	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712328638	8	137214788	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	137214788	137214798	1	12	320.484	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	9	12	0	0	./.	1	5	3	5	19	32	19	32	3	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712330994	9	208556	ATATT	A	509	PASS	C9orf66	CCDS6439.1	r.?	-	-	Del	downstream	D	208556	208561	4	28	479.606	-	-	1	1	1	C9orf66|CCDS6439.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C9orf66|CCDS6439.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	7	14	7	0	0	./.	3	6	5	7	17	24	17	24	5	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712334104	9	11700454	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	11700454	11700460	1	10	268.12	-	-	5	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	4	1	5	1	16	10	16	10	5	1	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712337451	9	25436036	TATAATGACCAGA	T	290	PASS	-	-	-	-	-	Del	-	D	25436036	25436050	12	35	542.261	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	6	4	6	4	18	17	18	17	6	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712337658	9	26258507	ATCT	A	420	PASS	-	-	-	-	-	Del	-	D	26258507	26258516	3	20	378.981	-	-	2	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	3	5	23	15	23	15	3	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712339214	9	31338855	ATTAT	A	480	PASS	-	-	-	-	-	Del	-	D	31338855	31338867	4	25	433.809	-	-	2	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	4	8	5	19	17	19	17	8	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712340919	9	37936272	CAG	C	300	PASS	SHB	CCDS43806.1	r.?	-	-	Del	intronic	D	37936272	37936276	2	10	271.13	-	-	1	1	1	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	4	1	4	3	30	14	30	14	4	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712346172	9	76286712	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	76286712	76286721	1	30	482.616	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	4	5	7	7	22	26	22	26	7	7	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712354182	9	109048841	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	109048841	109048857	2	12	271.13	-	-	7	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	3	3	3	19	26	19	26	3	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712357007	9	119323844	CAG	C	600	PASS	ASTN2	CCDS48009.1	r.?	-	-	Del	intronic	D	119323844	119323848	2	35	538.649	-	-	1	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	6	4	10	4	28	13	28	13	10	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712357929	9	122924035	CAG	C	480	PASS	-	-	-	-	-	Del	-	D	122924035	122924039	2	21	433.207	-	-	1	1	1	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	6	2	7	3	20	12	20	12	7	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712360339	9	132812138	CTTTTT	C	269	PASS	GPR107	CCDS48041.1	r.?	-	-	Del	upstream	D	132812138	132812146	5	10	271.13	-	-	7	1	1	GPR107|CCDS48041.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GPR107|CCDS48041.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	13	13	13	0	0	./.	4	1	5	2	23	9	23	9	5	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712365572	X	14229231	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	14229231	14229241	1	24	426.161	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	5	3	8	5	24	39	25	39	8	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712366018	X	16302020	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	16302020	16302030	1	12	263.641	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	5	4	37	30	37	30	5	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712368070	X	25542226	G	GT	1260	PASS	-	-	-	-	-	Ins	-	I	25542226	25542234	1	132	1120.78	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	11	10	15	13	36	43	37	43	15	13	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712368897	X	29274124	GT	G	720	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	29274124	29274130	1	49	648.272	-	-	5	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	6	6	7	9	21	23	21	23	7	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712369210	X	30561674	TG	T	1227	PASS	-	-	-	-	-	Del	-	D	30561674	30561677	1	144	1188.8	-	-	2	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	11	11	17	14	35	28	35	28	17	14	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712371091	X	39654588	GGGA	G	440	PASS	-	-	-	-	-	Del	-	D	39654588	39654593	3	30	486.957	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	5	4	6	13	20	13	20	4	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712372268	X	44705894	GGT	G	269	PASS	DUSP21	CCDS14264.1	r.?	-	-	Del	downstream	D	44705894	44705914	2	12	270.264	-	-	9	1	-	DUSP21|CCDS14264.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DUSP21|CCDS14264.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	18	32	18	32	2	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712373776	X	50884290	G	GA	869	PASS	-	-	-	-	-	Ins	-	I	50884290	50884300	1	72	802.965	-	-	9	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	7	8	8	11	32	35	32	35	8	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712374597	X	55549812	C	CACACATATATGTATATATATGTATATATATACACATATGTGTGTGT	300	PASS	-	-	-	-	-	Ins	-	I	55549812	55549823	46	12	132.392	-	-	0	1	-	-	-	./.	0	0	0	0	11	9	12	9	0	0	./.	3	2	0	0	30	38	30	39	3	2	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712375309	X	61972388	CT	C	840	PASS	-	-	-	-	-	Del	-	D	61972388	61972391	1	60	758.425	-	-	2	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	9	5	10	9	35	27	35	27	10	9	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712379486	X	82001295	C	CT	749	PASS	-	-	-	-	-	Ins	-	I	82001295	82001302	1	44	673.546	-	-	6	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	10	5	11	29	36	30	36	5	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712379957	X	83924540	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	83924540	83924560	2	10	270.866	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	1	4	2	4	24	30	24	30	2	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712382698	X	95331972	GA	G	840	PASS	-	-	-	-	-	Del	-	D	95331972	95331982	1	60	758.425	-	-	9	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	9	5	9	6	33	35	33	35	9	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712385326	X	106948444	TAC	T	269	PASS	-	-	-	-	-	Del	-	D	106948444	106948461	2	12	259.427	-	-	8	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	2	3	27	33	27	33	2	3	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712385769	X	109177995	CT	C	540	PASS	-	-	-	-	-	Del	-	D	109177995	109178005	1	30	486.957	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	5	4	7	8	32	30	32	30	7	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712386186	X	111668126	A	AT	989	PASS	-	-	-	-	-	Ins	-	I	111668126	111668133	1	90	904.689	-	-	6	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	8	9	9	11	28	28	28	28	9	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712389731	X	125693528	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	125693528	125693544	2	6	269.06	-	-	7	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	0	5	0	5	28	30	28	30	0	5	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712389996	X	126982143	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	126982143	126982153	1	20	368.375	-	-	9	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	3	4	6	8	30	20	30	20	6	8	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712390712	X	130887413	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	130887413	130887422	1	16	319.621	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	9	6	20	41	20	42	9	6	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712394055	X	145803661	AT	A	418	PASS	-	-	-	-	-	Del	-	D	145803661	145803664	1	35	533.303	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	6	8	11	33	31	33	31	8	11	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712395241	X	151014179	C	CAT	480	PASS	-	-	-	-	-	Ins	-	I	151014179	151014192	2	25	421.946	-	-	6	1	1	-	-	./.	0	0	0	0	17	9	18	9	0	0	./.	4	4	7	3	42	29	42	29	7	4	1	1	1	1	1	1	1	1
2662677	PD17996a	PD17996b	2712395441	X	152177879	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	152177879	152177888	1	36	533.905	-	-	8	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	5	5	8	8	32	39	34	39	8	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713449031	1	50019807	AAC	A	300	PASS	AGBL4	CCDS44137.1	r.?	-	-	Del	intronic	D	50019807	50019825	2	12	268.576	-	-	8	1	1	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	2	3	2	34	24	34	24	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713451456	1	57637104	TTC	T	300	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	57637104	57637107	2	12	268.576	-	-	1	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	2	3	4	3	30	39	30	39	4	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713459869	1	82953447	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	82953447	82953455	1	36	564.979	-	-	7	1	1	-	-	./.	0	0	0	0	32	21	33	21	0	0	./.	3	8	9	12	39	40	39	40	9	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713462639	1	91181683	GT	G	300	PASS	BARHL2	CCDS730.1	r.?	-	-	Del	intronic	D	91181683	91181685	1	6	268.576	-	-	1	1	1	BARHL2|CCDS730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BARHL2|CCDS730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	0	6	0	23	22	23	22	6	0	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713464399	1	95690963	CT	C	614	PASS	-	-	-	-	-	Del	-	D	95690963	95690966	1	36	590.867	-	-	2	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	8	7	12	29	32	29	32	7	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713464681	1	96587878	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	96587878	96587888	1	24	424.905	-	-	9	1	1	-	-	./.	0	0	0	0	22	27	24	27	0	0	./.	3	5	8	10	34	41	35	41	8	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713471711	1	118321590	GA	G	766	PASS	-	-	-	-	-	Del	-	D	118321590	118321592	1	72	805.728	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	7	8	8	10	28	32	28	32	8	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713480006	1	156714123	GCT	G	300	PASS	HDGF	CCDS44247.1	r.452_453delAG	c.367_368delAG	p.S123fs*6	Del	frameshift	D	156714123	156714128	2	12	267.974	-	-	2	1	1	HDGF|CCDS44247.1|r.452_453delAG|c.367_368delAG|p.S123fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HDGF|CCDS44247.1|r.452_453delAG|c.367_368delAG|p.S123fs*6|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	5	2	10	21	10	21	5	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713483060	1	166061347	CA	C	1109	PASS	FAM78B	CCDS30931.1	r.?	-	-	Del	intronic	D	166061347	166061349	1	108	1003.73	-	-	1	1	1	FAM78B|CCDS30931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM78B|CCDS30931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	8	11	9	12	25	37	25	37	9	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713485233	1	172183911	A	AT	696	PASS	DNM3	CCDS44276.1	r.?	-	-	Ins	intronic	I	172183911	172183920	1	49	637.358	-	-	8	1	1	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	18	21	19	0	0	./.	6	6	8	7	33	41	33	41	8	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713486935	1	177234687	CATCAT	C	267	PASS	FAM5B	CCDS1320.1	r.?	-	-	Del	intronic	D	177234687	177234700	5	15	321.689	-	-	2	1	1	FAM5B|CCDS1320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM5B|CCDS1320.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	2	4	3	4	27	26	27	26	3	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713491251	1	190320027	AC	A	540	PASS	FAM5C	CCDS1373.1	r.?	-	-	Del	intronic	D	190320027	190320029	1	28	483.437	-	-	1	1	1	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	17	26	17	0	0	./.	6	3	6	5	36	28	36	28	6	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713500154	1	216423955	CA	C	1140	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216423955	216423957	1	110	1020.59	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	10	9	14	16	35	37	35	37	14	16	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713500195	1	216617510	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	216617510	216617520	1	12	265.566	-	-	9	1	1	-	-	./.	0	0	0	0	20	28	21	28	0	0	./.	3	2	3	2	45	28	45	30	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713502098	1	222170760	CAAAAA	C	269	PASS	-	-	-	-	-	Del	-	D	222170760	222170770	5	12	268.576	-	-	9	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	3	2	3	3	27	34	27	34	3	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713506593	1	235457011	GGAAAGGGCCAA	G	493	PASS	ARID4B	CCDS31061.1	r.?	-	-	Del	intronic	D	235457011	235457023	11	60	912.556	-	-	1	1	1	ARID4B|CCDS31061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID4B|CCDS31061.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	14	3	15	5	38	18	38	18	15	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713517763	10	12924052	AAAG	A	598	PASS	-	-	-	-	-	Del	-	D	12924052	12924058	3	36	591.254	-	-	1	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	3	8	4	12	22	31	22	31	4	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713520315	10	19389719	G	GT	300	PASS	ENSG00000234778	ENST00000455529	r.?	-	-	Ins	intronic	I	19389719	19389729	1	10	265.687	-	-	9	1	1	ENSG00000234778|ENST00000455529|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000234778|ENST00000455529|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	1	4	1	4	22	42	24	42	1	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713534553	10	59002728	TTTTG	T	358	PASS	-	-	-	-	-	Del	-	D	59002728	59002748	4	20	375.815	-	-	4	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	3	9	7	30	26	30	26	9	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713543238	10	83642157	ATG	A	300	PASS	NRG3	CCDS31233.1	r.?	-	-	Del	intronic	D	83642157	83642173	2	10	269.299	-	-	7	1	-	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	27	16	27	0	0	./.	1	4	1	5	30	34	30	34	1	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713543745	10	85327614	GA	G	540	PASS	-	-	-	-	-	Del	-	D	85327614	85327617	1	30	484.738	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	5	11	8	29	24	29	24	11	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713551592	10	108601900	A	AT	840	PASS	SORCS1	CCDS7559.1	r.?	-	-	Ins	intronic	I	108601900	108601909	1	48	745.608	-	-	8	1	1	SORCS1|CCDS7559.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SORCS1|CCDS7559.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	26	15	27	0	0	./.	3	11	4	15	16	40	17	40	4	15	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713554099	10	116646181	G	GA	300	PASS	FAM160B1	CCDS44480.1	r.?	-	-	Ins	intronic	I	116646181	116646191	1	10	263.278	-	-	9	1	1	FAM160B1|CCDS44480.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM160B1|CCDS44480.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	4	1	4	1	35	31	35	31	4	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713555784	10	121442499	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	121442499	121442506	1	10	263.278	-	-	6	1	-	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	1	4	2	4	28	38	29	38	2	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713569721	11	24822102	C	CCA	300	PASS	LUZP2	CCDS31446.1	r.?	-	-	Ins	intronic	I	24822102	24822103	2	10	262.63	-	-	0	1	-	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	4	1	0	0	37	24	39	25	4	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713589743	11	86026243	CGAGA	C	480	PASS	C11orf73	CCDS8275.1	r.?	-	-	Del	intronic	D	86026243	86026254	4	21	431.767	-	-	5	1	1	C11orf73|CCDS8275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf73|CCDS8275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	6	2	9	3	24	22	24	22	9	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713591343	11	90269966	AT	A	720	PASS	-	-	-	-	-	Del	-	D	90269966	90269976	1	49	647.65	-	-	9	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	6	6	8	8	46	48	46	48	8	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713593225	11	95880655	A	AT	300	PASS	MAML2	CCDS44714.1	r.?	-	-	Ins	intronic	I	95880655	95880663	1	12	266.844	-	-	7	1	1	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAML2|CCDS44714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	24	18	24	0	0	./.	3	2	5	2	27	26	28	26	5	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713593336	11	96191657	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	96191657	96191674	2	6	264.436	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	0	5	0	6	39	35	39	35	0	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713604814	11	127964600	TA	T	900	PASS	-	-	-	-	-	Del	-	D	127964600	127964602	1	72	807.757	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	8	7	11	11	26	29	26	29	11	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713608387	12	3790098	CAG	C	300	PASS	EFCAB4B	CCDS44803.1	r.?	-	-	Del	intronic	D	3790098	3790114	2	10	269.336	-	-	7	1	1	EFCAB4B|CCDS44803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFCAB4B|CCDS44803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	1	4	1	4	24	25	24	25	1	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713608462	12	3983133	CT	C	360	PASS	PARP11	CCDS8523.2	r.?	-	-	Del	upstream	D	3983133	3983135	1	15	323.925	-	-	1	1	1	PARP11|CCDS8523.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PARP11|CCDS8523.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	21	11	21	11	0	0	./.	2	4	2	4	32	25	32	25	2	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713610187	12	8346254	ATG	A	268	PASS	ENSG00000226711	ENST00000456135	r.?	-	-	Del	intronic	D	8346254	8346270	2	10	263.917	-	-	7	1	1	ENSG00000226711|ENST00000456135|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000226711|ENST00000456135|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	25	27	25	0	0	./.	4	1	3	1	30	31	30	31	4	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713617029	12	25700570	G	GA	300	PASS	IFLTD1	CCDS44849.1	r.?	-	-	Ins	intronic	I	25700570	25700580	1	12	266.928	-	-	9	1	1	IFLTD1|CCDS44849.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IFLTD1|CCDS44849.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	2	3	2	3	41	32	41	33	2	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713632952	12	74141231	CTATT	C	387	PASS	-	-	-	-	-	Del	-	D	74141231	74141238	4	21	431.901	-	-	1	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	2	6	3	6	20	44	20	44	3	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713635751	12	82878285	G	GA	1289	PASS	-	-	-	-	-	Ins	-	I	82878285	82878292	1	140	1171.47	-	-	6	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	13	9	13	10	27	31	27	31	13	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713640792	12	97819918	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	97819918	97819937	2	12	267.53	-	-	9	1	-	-	-	./.	0	0	0	0	25	11	25	11	0	0	./.	3	2	5	3	43	39	43	39	5	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713647419	12	117988038	TC	T	840	PASS	KSR2	ENST00000425217	r.?	-	-	Del	intronic	D	117988038	117988040	1	60	755.826	-	-	1	1	1	KSR2|ENST00000425217|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KSR2|ENST00000425217|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	9	5	14	7	42	34	42	34	14	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713652457	12	130316386	A	AT	389	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Ins	intronic	I	130316386	130316396	1	14	364.668	-	-	9	1	-	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	27	9	27	0	0	./.	1	6	6	12	26	52	26	52	6	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713664455	13	45100499	T	TA	300	PASS	TSC22D1	CCDS31966.1	r.?	-	-	Ins	intronic	I	45100499	45100509	1	12	262.013	-	-	9	1	1	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	3	2	3	2	37	30	37	30	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713665125	13	47049123	AC	A	600	PASS	-	-	-	-	-	Del	-	D	47049123	47049125	1	32	540.884	-	-	1	1	1	-	-	./.	0	0	0	0	22	6	22	6	0	0	./.	7	3	7	5	26	18	26	18	7	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713674298	13	72702998	CTCTT	C	749	PASS	-	-	-	-	-	Del	-	D	72702998	72703003	4	56	702.548	-	-	1	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	7	6	10	9	30	30	30	30	10	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713679939	13	89173604	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	89173604	89173612	1	25	427.891	-	-	7	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	4	4	5	4	39	34	39	34	5	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713680173	13	89946247	AAAAC	A	323	PASS	-	-	-	-	-	Del	-	D	89946247	89946255	4	28	483.183	-	-	1	1	1	-	-	./.	0	0	0	0	25	22	25	22	0	0	./.	3	6	5	7	29	21	29	21	5	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713688418	13	112111596	GA	G	809	PASS	-	-	-	-	-	Del	-	D	112111596	112111599	1	60	757.238	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	5	9	7	12	21	30	21	30	7	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713692500	14	27808863	CCT	C	420	PASS	-	-	-	-	-	Del	-	D	27808863	27808882	2	18	379.037	-	-	9	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	2	5	2	5	32	35	32	35	2	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713693011	14	29240133	AAG	A	269	PASS	FOXG1	CCDS9636.1	r.?	-	-	Del	downstream	D	29240133	29240148	2	12	262.914	-	-	7	1	-	FOXG1|CCDS9636.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C14orf23|ENST00000399387|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	20	12	20	0	0	./.	2	3	1	3	35	45	35	45	2	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713699974	14	48526003	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	48526003	48526007	2	6	269.536	-	-	1	1	-	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	0	3	0	41	23	41	23	6	0	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713710217	14	76527973	A	AT	1020	PASS	C14orf179	CCDS9847.1	r.?	-	-	Ins	intronic	I	76527973	76527981	1	78	909.079	-	-	7	1	1	C14orf179|CCDS9847.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C14orf179|CCDS9847.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	22	17	0	0	./.	12	5	16	8	45	34	46	34	16	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713713135	14	84985449	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	84985449	84985459	1	12	260.505	-	-	9	1	1	-	-	./.	0	0	0	0	17	28	17	28	0	0	./.	3	2	4	2	42	37	43	37	4	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713714250	14	87901062	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	87901062	87901070	1	63	749.043	-	-	7	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	8	6	9	9	32	37	32	37	9	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713717966	14	98477355	A	AT	298	PASS	-	-	-	-	-	Ins	-	I	98477355	98477365	1	15	309.235	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	13	0	0	./.	2	4	3	6	29	38	29	40	3	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713718600	14	100534421	AT	A	300	PASS	EVL	CCDS9955.1	r.?	-	-	Del	intronic	D	100534421	100534423	1	12	267.128	-	-	1	1	1	EVL|CCDS9955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EVL|CCDS9955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	6	4	22	17	22	17	6	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713725900	15	32236484	CA	C	600	PASS	-	-	-	-	-	Del	-	D	32236484	32236488	1	35	541.28	-	-	3	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	6	4	8	4	35	27	35	27	8	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713727322	15	35610194	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	35610194	35610204	1	10	267.931	-	-	9	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	1	4	1	4	30	45	30	47	1	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713731833	15	48905686	CAT	C	300	PASS	FBN1	CCDS32232.1	r.?	-	-	Del	intronic	D	48905686	48905703	2	10	270.339	-	-	8	1	1	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	22	16	22	0	0	./.	1	4	1	4	32	31	32	31	1	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713736502	15	60865647	ATAAT	A	478	PASS	RORA	CCDS10177.1	r.?	-	-	Del	intronic	D	60865647	60865655	4	28	484.684	-	-	1	1	1	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RORA|CCDS10177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	3	6	3	7	25	25	25	25	3	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713747527	15	93444560	C	CT	300	PASS	CHD2	CCDS10374.2	r.?	-	-	Ins	intronic	I	93444560	93444570	1	12	264.921	-	-	9	1	1	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	21	26	21	0	0	./.	3	2	4	2	29	27	29	27	4	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713756836	16	14610436	CTCAAAGAAAGAACATTTGAA	C	348	PASS	PARN	CCDS45419.1	r.?	-	-	Del	intronic	D	14610436	14610461	20	40	649.524	-	-	1	1	1	PARN|CCDS45419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARN|CCDS45419.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	3	9	3	8	20	28	20	28	3	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713757271	16	15949669	AC	A	1140	PASS	MYH11	CCDS45424.1	r.?	-	-	Del	intronic	D	15949669	15949671	1	110	1023.6	-	-	1	1	1	MYH11|CCDS45424.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MYH11|CCDS45424.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	9	10	10	15	27	33	27	33	10	15	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713760249	16	24383094	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	24383094	24383104	1	10	267.625	-	-	9	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	1	4	1	4	30	36	30	37	1	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713772675	16	64944567	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	64944567	64944575	1	18	374.073	-	-	7	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	5	3	6	28	29	28	29	3	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713773688	16	68531767	ACT	A	869	PASS	-	-	-	-	-	Del	-	D	68531767	68531770	2	42	805.282	-	-	1	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	13	2	17	4	32	14	32	14	17	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713787671	17	13597334	AT	A	1140	PASS	-	-	-	-	-	Del	-	D	13597334	13597342	1	108	1028.83	-	-	7	1	1	-	-	./.	0	0	0	0	28	21	28	21	0	0	./.	11	8	12	14	38	44	38	44	12	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713796517	17	38989269	AACTCTT	A	551	PASS	TMEM99	CCDS42319.1	r.?	-	-	Del	intronic	D	38989269	38989276	6	110	1028.83	-	-	1	1	1	TMEM99|CCDS42319.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMEM99|CCDS42319.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	9	10	9	16	20	35	20	36	9	17	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713800499	17	49075383	ATTTTTTTTTTTTTTT	A	261	PASS	SPAG9	CCDS45740.1	r.?	-	-	Del	intronic	D	49075383	49075413	15	18	484.933	-	-	1	1	-	SPAG9|CCDS45740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG9|CCDS45740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	29	19	29	0	0	./.	1	8	2	8	12	43	12	43	2	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713814964	18	4443868	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	4443868	4443871	1	70	803.48	-	-	2	1	1	-	-	./.	0	0	0	0	16	25	16	25	0	0	./.	9	6	11	8	39	35	40	35	11	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713816371	18	8649210	G	GA	492	PASS	-	-	-	-	-	Ins	-	I	8649210	8649219	1	30	482.088	-	-	8	1	-	-	-	./.	0	0	0	0	14	21	14	22	0	0	./.	5	4	9	8	34	28	34	28	9	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713816401	18	8718952	A	AT	389	PASS	KIAA0802	CCDS11841.1	r.?	-	-	Ins	intronic	I	8718952	8718961	1	20	372.549	-	-	8	1	1	KIAA0802|CCDS11841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0802|CCDS11841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	29	21	29	0	0	./.	3	4	6	4	39	46	39	47	6	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713818815	18	14852496	A	AAT	389	PASS	ENSG00000180777	ENST00000320584	r.4376_4377insau	c.?	p.?	Ins	3'UTR variant	I	14852496	14852512	2	18	370.743	-	-	7	1	1	ENSG00000180777|ENST00000320584|r.4376_4377insau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ENSG00000180777|ENST00000320584|r.4376_4377insau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	22	17	22	17	0	0	./.	2	5	4	7	41	23	45	23	4	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713829970	18	50419596	G	GA	660	PASS	DCC	CCDS11952.1	r.?	-	-	Ins	intronic	I	50419596	50419605	1	40	583.8	-	-	8	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	7	4	8	6	36	33	36	34	8	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713831708	18	55239831	GT	G	300	PASS	FECH	CCDS11964.1	r.?	-	-	Del	intronic	D	55239831	55239833	1	6	268.429	-	-	1	1	-	FECH|CCDS11964.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FECH|CCDS11964.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	5	0	11	0	33	16	33	16	11	0	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713833000	18	58191110	A	AT	385	PASS	-	-	-	-	-	Ins	-	I	58191110	58191118	1	28	482.088	-	-	7	1	1	-	-	./.	0	0	0	0	17	21	17	23	0	0	./.	3	6	8	10	37	40	37	40	8	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713844878	19	10504776	AAAC	A	629	PASS	MIR1181	CCDS12237.1	r.?	-	-	Del	intronic	D	10504776	10504791	3	42	594.149	-	-	4	1	1	MIR1181|CCDS12237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR1181|CCDS12237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	6	5	11	5	31	21	31	21	11	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713849237	19	20374630	TA	T	1049	PASS	ZNF90	ENST00000427401	r.?	-	-	Del	intronic	D	20374630	20374637	1	99	971.368	-	-	6	1	1	ZNF90|ENST00000427401|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ZNF90|ENST00000427401|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	16	27	16	0	0	./.	8	10	10	12	32	29	32	29	10	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713859476	19	48035966	CAT	C	300	PASS	ZNF541	CCDS46133.1	r.?	-	-	Del	intronic	D	48035966	48035983	2	12	271.162	-	-	8	1	1	ZNF541|CCDS46133.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF541|CCDS46133.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	2	3	2	22	26	22	26	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713860848	19	51188588	TC	T	480	PASS	SHANK1	CCDS12799.1	r.?	-	-	Del	intronic	D	51188588	51188595	1	24	429.044	-	-	6	1	1	SHANK1|CCDS12799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHANK1|CCDS12799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	23	22	23	0	0	./.	3	5	3	6	21	27	21	27	3	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713872971	2	25981554	T	TG	480	PASS	ASXL2	ENST00000435504	r.?	-	-	Ins	intronic	I	25981554	25981555	1	25	422.678	-	-	0	1	1	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	24	14	24	0	0	./.	4	4	4	4	24	32	25	32	4	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713874952	2	31481698	GA	G	1049	PASS	EHD3	CCDS1774.1	r.?	-	-	Del	intronic	D	31481698	31481702	1	99	966.679	-	-	3	1	1	EHD3|CCDS1774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EHD3|CCDS1774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	7	24	7	0	0	./.	8	10	15	13	32	24	32	24	15	13	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713876981	2	36945973	C	CA	660	PASS	VIT	CCDS33180.1	r.?	-	-	Ins	intronic	I	36945973	36945981	1	42	584.494	-	-	7	1	1	VIT|CCDS33180.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VIT|CCDS33180.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	6	5	7	5	25	21	25	22	7	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713883253	2	55116299	CAT	C	360	PASS	EML6	CCDS46286.1	r.?	-	-	Del	intronic	D	55116299	55116303	2	15	322.427	-	-	1	1	1	EML6|CCDS46286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EML6|CCDS46286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	21	24	21	0	0	./.	4	2	4	2	23	32	23	32	4	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713883380	2	55425734	C	CA	540	PASS	C2orf63	CCDS33201.1	r.?	-	-	Ins	intronic	I	55425734	55425743	1	30	467.987	-	-	8	1	1	C2orf63|CCDS33201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C2orf63|CCDS33201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	26	20	26	0	0	./.	5	4	8	6	33	30	33	30	8	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713885638	2	62346610	C	CA	540	PASS	COMMD1	CCDS1869.1	r.?	-	-	Ins	intronic	I	62346610	62346618	1	30	477.018	-	-	7	1	1	COMMD1|CCDS1869.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COMMD1|CCDS1869.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	20	25	20	0	0	./.	4	5	10	9	31	31	31	31	10	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713906888	2	131498080	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	131498080	131498089	1	20	371.951	-	-	8	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	4	3	10	7	36	38	36	39	10	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713909656	2	137865449	T	TA	478	PASS	THSD7B	ENST00000409968	r.?	-	-	Ins	intronic	I	137865449	137865456	1	28	478.222	-	-	6	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	16	23	16	0	0	./.	6	3	8	4	29	23	30	24	8	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713919669	2	168035259	C	CT	720	PASS	XIRP2	CCDS42769.1	r.?	-	-	Ins	intronic	I	168035259	168035267	1	48	636.425	-	-	7	1	1	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	7	5	8	5	34	37	35	38	8	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713920120	2	169422241	A	AT	1169	PASS	LASS6	CCDS2228.1	r.?	-	-	Ins	intronic	I	169422241	169422250	1	117	1059.71	-	-	8	1	1	LASS6|CCDS2228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LASS6|CCDS2228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	23	22	23	0	0	./.	12	8	13	8	36	31	37	31	13	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713922677	2	175910825	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	175910825	175910834	1	36	531.358	-	-	8	1	-	-	-	./.	0	0	0	0	15	28	15	28	0	0	./.	5	5	7	12	25	46	26	46	7	13	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713945282	2	241930031	ACT	A	300	PASS	ENSG00000226321	ENST00000443866	r.?	-	-	Del	intronic	D	241930031	241930036	2	10	257.852	-	-	2	1	1	ENSG00000226321|ENST00000443866|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000226321|ENST00000443866|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	11	26	11	0	0	./.	4	1	5	2	33	24	33	24	5	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713960047	20	41976268	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	41976268	41976276	1	24	428.375	-	-	7	1	1	-	-	./.	0	0	0	0	18	26	18	26	0	0	./.	5	3	13	7	30	33	30	33	13	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713960884	20	44466896	C	CT	418	PASS	SNX21	CCDS13377.1	r.?	-	-	Ins	intronic	I	44466896	44466905	1	24	406.098	-	-	8	1	1	SNX21|CCDS13377.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNX21|CCDS13377.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	5	3	7	4	23	17	23	17	7	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2713981332	21	38821463	T	TA	929	PASS	DYRK1A	CCDS13653.1	r.?	-	-	Ins	intronic	I	38821463	38821465	1	77	858.235	-	-	1	1	1	DYRK1A|CCDS13653.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DYRK1A|CCDS13653.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	6	10	9	13	25	33	25	34	9	13	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714003780	3	15689826	GAGAC	G	507	PASS	BTD	CCDS2628.1	r.?	-	-	Del	downstream	D	15689826	15689832	4	35	538.018	-	-	1	1	1	BTD|CCDS2628.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	BTD|CCDS2628.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	27	20	27	20	0	0	./.	6	4	12	16	33	22	33	22	12	16	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714007376	3	26076435	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	26076435	26076444	1	35	531.998	-	-	8	1	1	-	-	./.	0	0	0	0	19	32	20	32	0	0	./.	6	4	6	4	30	38	32	38	6	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714011396	3	37857203	CA	C	300	PASS	ITGA9	CCDS2669.1	r.?	-	-	Del	intronic	D	37857203	37857212	1	10	269.009	-	-	8	1	1	ITGA9|CCDS2669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA9|CCDS2669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	4	1	4	1	38	35	38	35	4	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714017417	3	56421186	TAATA	T	509	PASS	ERC2	CCDS46851.1	r.?	-	-	Del	intronic	D	56421186	56421199	4	30	484.216	-	-	3	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	28	28	28	0	0	./.	5	4	6	7	28	42	28	42	6	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714019234	3	60963945	TA	T	300	PASS	FHIT	CCDS2894.1	r.?	-	-	Del	intronic	D	60963945	60963950	1	6	269.009	-	-	4	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	25	24	25	0	0	./.	0	5	3	5	20	33	20	33	3	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714022253	3	69853162	CT	C	600	PASS	MITF	CCDS43106.1	r.?	-	-	Del	intronic	D	69853162	69853164	1	35	537.416	-	-	1	1	1	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	6	4	7	5	33	27	33	27	7	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714026874	3	79585196	C	CA	300	PASS	ROBO1	ENST00000464233	r.?	-	-	Ins	intronic	I	79585196	79585203	1	12	265.397	-	-	6	1	1	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	25	22	25	0	0	./.	2	3	3	3	40	37	40	37	3	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714027864	3	82521416	GC	G	869	PASS	-	-	-	-	-	Del	-	D	82521416	82521421	1	70	806.425	-	-	4	1	1	-	-	./.	0	0	0	0	22	25	22	25	0	0	./.	6	9	10	14	30	38	30	38	10	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714052158	3	156220541	G	GTA	780	PASS	KCNAB1	CCDS33882.1	r.?	-	-	Ins	intronic	I	156220541	156220544	2	56	683.77	-	-	1	1	1	KCNAB1|CCDS33882.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNAB1|CCDS33882.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	6	7	9	9	44	32	44	32	9	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714075954	4	24189701	CA	C	840	PASS	-	-	-	-	-	Del	-	D	24189701	24189703	1	55	753.01	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	4	10	6	11	31	38	31	38	6	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714078525	4	31256448	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	31256448	31256456	1	54	686.58	-	-	7	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	5	8	11	11	49	30	50	30	11	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714080313	4	36179303	ATCACTATTTCTTTGGTATATTTAG	A	580	PASS	ARAP2	CCDS3441.1	r.?	-	-	Del	intronic	D	36179303	36179329	24	117	1075.73	-	-	1	1	1	ARAP2|CCDS3441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARAP2|CCDS3441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	24	22	24	0	0	./.	8	12	7	9	27	28	28	31	8	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714081610	4	39499707	T	TTC	509	PASS	UGDH	CCDS3455.1	r.?	-	-	Ins	downstream	I	39499707	39499709	2	28	472.037	-	-	0	1	1	UGDH|CCDS3455.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	UGDH|CCDS3455.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	23	19	23	0	0	./.	6	3	6	3	36	34	36	34	6	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714091376	4	65761825	CT	C	360	PASS	-	-	-	-	-	Del	-	D	65761825	65761828	1	15	322.117	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	4	6	9	29	37	29	37	6	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714091909	4	67236006	C	CT	1140	PASS	-	-	-	-	-	Ins	-	I	67236006	67236016	1	104	1002.68	-	-	9	1	1	-	-	./.	0	0	0	0	15	30	15	30	0	0	./.	12	7	19	11	39	42	39	42	19	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714108323	4	117421263	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	117421263	117421271	1	10	265.922	-	-	7	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	1	5	3	30	19	31	19	5	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714109048	4	119472173	C	CA	285	PASS	-	-	-	-	-	Ins	-	I	119472173	119472180	1	28	478.659	-	-	6	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	6	3	8	7	18	33	18	33	8	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714115119	4	136522496	CA	C	480	PASS	-	-	-	-	-	Del	-	D	136522496	136522498	1	25	430.291	-	-	1	1	1	-	-	./.	0	0	0	0	28	24	28	24	0	0	./.	4	4	7	9	31	31	31	31	7	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714116986	4	142026049	GTC	G	360	PASS	RNF150	ENST00000306799	r.?	-	-	Del	intronic	D	142026049	142026065	2	16	322.719	-	-	7	1	1	RNF150|ENST00000306799|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF150|ENST00000306799|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	3	3	4	4	34	38	34	38	4	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714128044	4	173344876	ATC	A	780	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Del	intronic	D	173344876	173344882	2	44	699.224	-	-	2	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	10	3	10	6	44	29	44	29	10	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714128995	4	175899449	CTTG	C	300	PASS	ADAM29	CCDS3823.1	r.?	-	-	Del	downstream	D	175899449	175899457	3	10	264.116	-	-	2	1	1	ADAM29|CCDS3823.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ADAM29|CCDS3823.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	30	15	30	15	0	0	./.	4	1	6	1	38	19	38	19	6	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714129855	4	178138446	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	178138446	178138450	1	48	637.61	-	-	3	1	1	-	-	./.	0	0	0	0	23	23	23	24	0	0	./.	7	5	9	7	25	20	25	20	9	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714139430	5	7855444	GA	G	1020	PASS	FASTKD3	CCDS3873.1	r.?	-	-	Del	downstream	D	7855444	7855452	1	88	916.036	-	-	7	1	1	FASTKD3|CCDS3873.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C5orf49|CCDS43300.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	23	17	23	0	0	./.	10	7	10	14	28	35	28	35	10	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714140484	5	10716387	ACTTTTCAGG	A	539	PASS	DAP	CCDS3880.1	r.?	-	-	Del	intronic	D	10716387	10716397	9	98	1023.81	-	-	1	1	1	DAP|CCDS3880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAP|CCDS3880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	6	13	7	14	29	48	29	48	7	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714151169	5	39320036	ACCCAAGGACTC	A	435	PASS	C9	CCDS3929.1	r.?	-	-	Del	intronic	D	39320036	39320049	11	72	807.665	-	-	1	1	1	C9|CCDS3929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9|CCDS3929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	7	8	8	9	17	26	17	26	8	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714165703	5	86840233	AT	A	360	PASS	-	-	-	-	-	Del	-	D	86840233	86840235	1	16	323.307	-	-	1	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	3	3	3	3	44	30	44	30	3	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714165722	5	86941106	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	86941106	86941115	1	40	577.076	-	-	8	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	4	7	4	11	29	40	29	40	4	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714175392	5	117315020	AT	A	1138	PASS	-	-	-	-	-	Del	-	D	117315020	117315024	1	105	1077.09	-	-	3	1	1	-	-	./.	0	0	0	0	19	26	19	26	0	0	./.	6	14	10	17	32	44	32	44	10	17	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714175562	5	117804276	C	CA	360	PASS	ENSG00000232769	ENST00000428465	r.?	-	-	Ins	intronic	I	117804276	117804283	1	15	319.093	-	-	6	1	1	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	4	2	7	5	31	25	31	26	7	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714178645	5	127115386	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	127115386	127115393	1	25	426.26	-	-	6	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	4	4	7	4	26	19	26	19	7	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714178783	5	127675328	CAACT	C	327	PASS	FBN2	CCDS34222.1	r.?	-	-	Del	intronic	D	127675328	127675333	4	18	376.589	-	-	1	1	1	FBN2|CCDS34222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBN2|CCDS34222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	5	2	6	2	35	28	35	28	6	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714179652	5	130572900	GAA	G	780	PASS	-	-	-	-	-	Del	-	D	130572900	130572904	2	56	699.896	-	-	3	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	7	6	12	10	40	29	40	29	12	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714179953	5	131337120	CCTCTTGGGTTTTA	C	406	PASS	ACSL6	CCDS34229.1	r.?	-	-	Del	intronic	D	131337120	131337134	13	60	753.179	-	-	1	1	1	ACSL6|CCDS34229.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACSL6|CCDS34229.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	9	5	8	5	28	24	29	24	9	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714183081	5	141544269	CT	C	540	PASS	-	-	-	-	-	Del	-	D	141544269	141544271	1	30	484.961	-	-	1	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	4	5	8	5	24	18	24	18	8	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714183857	5	144331862	A	AG	660	PASS	-	-	-	-	-	Ins	-	I	144331862	144331863	1	40	586.107	-	-	0	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	4	7	4	11	31	39	31	39	4	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714189597	5	162174142	C	CAT	509	PASS	-	-	-	-	-	Ins	-	I	162174142	162174154	2	28	474.123	-	-	5	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	6	4	8	28	39	28	39	4	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714189996	5	163224445	A	AT	689	PASS	-	-	-	-	-	Ins	-	I	163224445	163224453	1	48	636.379	-	-	7	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	5	7	11	12	36	36	36	37	11	12	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714192045	5	169396448	C	CA	540	PASS	DOCK2	CCDS4371.1	r.?	-	-	Ins	intronic	I	169396448	169396455	1	30	478.338	-	-	6	1	1	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	23	11	23	0	0	./.	4	5	6	11	28	29	29	29	6	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714194377	5	176060619	GC	G	840	PASS	EIF4E1B	CCDS47345.1	r.?	-	-	Del	intronic	D	176060619	176060623	1	60	753.179	-	-	3	1	1	EIF4E1B|CCDS47345.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EIF4E1B|CCDS47345.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	26	18	26	0	0	./.	5	9	8	11	26	37	26	37	8	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714201944	6	14915677	AG	A	269	PASS	-	-	-	-	-	Del	-	D	14915677	14915679	1	12	262.116	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	2	3	2	22	10	22	10	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714212956	6	42413017	A	AC	300	PASS	TRERF1	CCDS4867.1	r.?	-	-	Ins	intronic	I	42413017	42413018	1	12	265.127	-	-	0	1	1	TRERF1|CCDS4867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TRERF1|CCDS4867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	2	3	3	16	26	16	26	3	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714214296	6	46134098	ATAGCTCACTG	A	377	PASS	ENPP5	CCDS4915.1	r.?	-	-	Del	intronic	D	46134098	46134111	10	56	698.48	-	-	1	1	1	ENPP5|CCDS4915.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENPP5|CCDS4915.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	6	7	6	7	29	27	29	27	6	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714217795	6	56621889	G	GA	300	PASS	DST	CCDS47441.1	r.?	-	-	Ins	intronic	I	56621889	56621899	1	12	265.127	-	-	9	1	1	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	32	13	32	0	0	./.	3	2	3	2	29	38	29	39	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714229868	6	91480141	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	91480141	91480149	1	18	372.863	-	-	7	1	1	-	-	./.	0	0	0	0	11	19	11	20	0	0	./.	5	2	6	2	35	25	36	25	6	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714230922	6	94832046	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	94832046	94832056	1	10	263.922	-	-	9	1	1	-	-	./.	0	0	0	0	25	14	25	14	0	0	./.	4	1	4	1	52	42	52	42	4	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714231568	6	97167137	AG	A	1020	PASS	-	-	-	-	-	Del	-	D	97167137	97167140	1	90	915.759	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	9	8	10	14	34	31	34	31	10	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714231947	6	98282252	GA	G	600	PASS	-	-	-	-	-	Del	-	D	98282252	98282262	1	35	538.08	-	-	9	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	6	4	8	8	42	26	42	26	8	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714232551	6	100000028	G	GA	300	PASS	CCNC	CCDS34502.1	r.?	-	-	Ins	intronic	I	100000028	100000038	1	12	265.729	-	-	9	1	1	CCNC|CCDS34502.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCNC|CCDS34502.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	2	3	3	6	20	38	20	38	3	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714235074	6	107162246	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	107162246	107162254	1	28	471.568	-	-	7	1	1	-	-	./.	0	0	0	0	14	21	14	22	0	0	./.	6	3	12	3	30	27	30	27	12	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714235823	6	109244810	CT	C	269	PASS	ARMC2	CCDS5069.2	r.?	-	-	Del	intronic	D	109244810	109244812	1	6	260.912	-	-	1	1	1	ARMC2|CCDS5069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARMC2|CCDS5069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	0	5	0	10	25	23	25	23	0	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714238175	6	117053938	C	CA	720	PASS	KPNA5	CCDS5111.1	r.2220_2221insa	c.?	p.?	Ins	3'UTR variant	I	117053938	117053945	1	48	639.193	-	-	6	1	1	KPNA5|CCDS5111.1|r.2220_2221insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	KPNA5|CCDS5111.1|r.2220_2221insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	21	18	21	0	0	./.	7	5	11	7	40	31	41	32	11	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714238935	6	119351743	GATCAACTGAT	G	261	PASS	FAM184A	CCDS43500.1	r.?	-	-	Del	intronic	D	119351743	119351754	10	30	484.814	-	-	1	1	1	FAM184A|CCDS43500.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM184A|CCDS43500.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	22	26	22	0	0	./.	4	5	5	5	31	25	31	25	5	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714250129	6	153778001	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	153778001	153778007	1	77	845.033	-	-	5	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	10	6	13	8	28	37	28	37	13	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714252633	6	160797090	C	CA	840	PASS	SLC22A3	CCDS5277.1	r.?	-	-	Ins	intronic	I	160797090	160797098	1	63	745.726	-	-	7	1	1	SLC22A3|CCDS5277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC22A3|CCDS5277.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	23	22	23	0	0	./.	8	6	11	10	34	40	35	40	11	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714255459	6	168442049	GT	G	600	PASS	KIF25	CCDS5305.1	r.?	-	-	Del	intronic	D	168442049	168442053	1	36	533.865	-	-	3	1	1	KIF25|CCDS5305.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF25|CCDS5305.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	5	5	7	6	25	21	25	21	7	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714265688	7	24167069	AACTATTGC	A	348	PASS	-	-	-	-	-	Del	-	D	24167069	24167080	8	48	646.397	-	-	1	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	5	7	7	9	28	33	28	33	7	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714266197	7	25589136	CTG	C	540	PASS	-	-	-	-	-	Del	-	D	25589136	25589140	2	28	484.798	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	6	3	8	4	38	37	38	37	8	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714269553	7	34989522	TAA	T	420	PASS	DPY19L1	CCDS43567.1	r.?	-	-	Del	intronic	D	34989522	34989526	2	14	376.463	-	-	3	1	1	DPY19L1|CCDS43567.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPY19L1|CCDS43567.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	30	15	30	0	0	./.	1	6	2	8	34	37	34	37	2	8	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714276165	7	53226558	GATAC	G	256	PASS	-	-	-	-	-	Del	-	D	53226558	53226566	4	35	538.664	-	-	1	1	1	-	-	./.	0	0	0	0	25	55	25	55	0	0	./.	4	6	4	6	47	95	47	95	4	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714277926	7	57595107	G	GA	1229	PASS	-	-	-	-	-	Ins	-	I	57595107	57595114	1	132	1109.52	-	-	6	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	10	11	11	14	29	43	30	43	12	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714278997	7	61788601	G	GAATGGAATCATCATCGAATGGAATCT	290	PASS	-	-	-	-	-	Ins	-	I	61788601	61788616	26	32	381.526	-	-	0	1	1	-	-	./.	0	0	0	0	38	42	39	42	0	0	./.	3	7	0	0	92	85	94	85	3	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714283961	7	71368957	G	GGACATGCAAA	348	PASS	CALN1	CCDS47603.1	r.?	-	-	Ins	intronic	I	71368957	71368968	10	48	574.15	-	-	1	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	17	19	0	0	./.	7	5	7	3	43	43	43	45	7	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714286566	7	77963831	G	GT	480	PASS	MAGI2	CCDS5594.1	r.?	-	-	Ins	intronic	I	77963831	77963838	1	25	426.115	-	-	6	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	4	4	5	4	27	30	29	30	5	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714289782	7	86817375	C	CA	480	PASS	DMTF1	CCDS5601.1	r.?	-	-	Ins	intronic	I	86817375	86817378	1	25	426.115	-	-	2	1	1	DMTF1|CCDS5601.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMTF1|ENST00000425406|r.1571_1572insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	14	11	14	0	0	./.	4	4	5	7	30	38	30	38	5	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714291809	7	93309598	T	TA	900	PASS	GNGT1	ENST00000455502	r.?	-	-	Ins	intronic	I	93309598	93309607	1	70	798.965	-	-	8	1	1	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	25	26	25	0	0	./.	6	9	11	15	48	42	49	43	11	15	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714298988	7	113004694	ATC	A	298	PASS	-	-	-	-	-	Del	-	D	113004694	113004697	2	15	321.392	-	-	1	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	2	4	3	4	35	35	35	35	3	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714301296	7	120524265	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	120524265	120524281	2	12	269.332	-	-	7	1	-	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	2	3	2	4	29	45	29	45	2	4	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714303481	7	126398660	TG	T	300	PASS	GRM8	CCDS5794.1	r.?	-	-	Del	intronic	D	126398660	126398663	1	12	269.332	-	-	2	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	2	3	2	3	26	36	26	36	2	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714315389	7	157952478	G	GA	660	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Ins	intronic	I	157952478	157952487	1	30	577.479	-	-	8	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	16	23	16	0	0	./.	2	9	5	9	31	34	31	35	5	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714319158	8	8987111	CTG	C	900	PASS	-	-	-	-	-	Del	-	D	8987111	8987118	2	70	809.608	-	-	3	1	1	-	-	./.	0	0	0	0	16	26	16	26	0	0	./.	9	6	9	7	27	29	27	29	9	7	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714321993	8	15757698	AG	A	300	PASS	-	-	-	-	-	Del	-	D	15757698	15757700	1	12	268.665	-	-	1	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	3	2	3	2	39	37	39	37	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714323894	8	20993009	GT	G	300	PASS	-	-	-	-	-	Del	-	D	20993009	20993011	1	6	259.634	-	-	1	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	0	6	0	25	24	25	24	6	0	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714337471	8	65739049	TA	T	300	PASS	-	-	-	-	-	Del	-	D	65739049	65739051	1	10	266.859	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	4	1	23	21	23	21	4	1	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714341135	8	76885504	CATATAACAAACCTTATTAACAA	C	551	PASS	-	-	-	-	-	Del	-	D	76885504	76885530	22	108	1025.5	-	-	1	1	1	-	-	./.	0	0	0	0	29	23	29	23	0	0	./.	8	11	8	11	37	35	37	35	8	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714364153	9	4591899	C	CT	389	PASS	SLC1A1	CCDS6452.1	r.?	-	-	Ins	downstream	I	4591899	4591901	1	18	369.194	-	-	1	1	1	SLC1A1|CCDS6452.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C9orf68|ENST00000381900|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	2	5	4	6	22	28	23	28	4	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714364368	9	5267782	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	5267782	5267791	1	55	748.021	-	-	8	1	1	-	-	./.	0	0	0	0	23	27	23	27	0	0	./.	4	10	7	11	29	45	29	45	7	11	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714365319	9	8040126	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	8040126	8040136	1	16	315.764	-	-	9	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	3	3	3	6	32	45	32	45	3	6	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714366420	9	10839174	G	GGT	298	PASS	-	-	-	-	-	Ins	-	I	10839174	10839175	2	16	316.366	-	-	0	1	1	-	-	./.	0	0	0	0	16	20	16	21	0	0	./.	3	3	1	0	25	34	25	34	4	3	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714370344	9	21775417	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	21775417	21775424	1	24	480.87	-	-	6	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	2	7	3	9	9	36	9	36	3	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714383641	9	79838414	TAAG	T	958	PASS	VPS13A	CCDS6655.1	r.?	-	-	Del	intronic	D	79838414	79838420	3	84	917.342	-	-	1	1	1	VPS13A|CCDS6655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13A|CCDS6655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	6	11	8	13	26	35	26	35	8	13	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714384346	9	82250820	AG	A	629	PASS	TLE4	CCDS43837.1	r.?	-	-	Del	intronic	D	82250820	82250824	1	36	594.353	-	-	3	1	1	TLE4|CCDS43837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLE4|CCDS43837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	8	5	9	37	38	37	38	5	9	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714385577	9	85782755	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	85782755	85782757	1	45	636.946	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	4	8	4	10	15	28	15	28	4	10	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714390933	9	102529238	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	102529238	102529258	2	15	324.193	-	-	9	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	4	2	4	2	23	32	23	32	4	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714392053	9	105772277	G	GTA	300	PASS	CYLC2	CCDS35085.1	r.?	-	-	Ins	intronic	I	105772277	105772294	2	12	264.14	-	-	8	1	-	CYLC2|CCDS35085.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	CYLC2|CCDS35085.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	32	22	32	22	0	0	./.	3	2	3	2	34	51	34	52	3	2	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714408103	X	27804720	TC	T	720	PASS	-	-	-	-	-	Del	-	D	27804720	27804722	1	45	651.715	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	8	4	11	5	18	9	18	9	11	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714416438	X	88120258	GA	G	1440	PASS	-	-	-	-	-	Del	-	D	88120258	88120263	1	168	1300.42	-	-	4	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	13	11	17	14	25	20	25	20	17	14	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714416586	X	88955678	T	TA	807	PASS	-	-	-	-	-	Ins	-	I	88955678	88955685	1	90	911.824	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	9	17	21	26	30	26	30	17	21	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714417416	X	94229076	GTTGT	G	1376	PASS	-	-	-	-	-	Del	-	D	94229076	94229083	4	176	1355.93	-	-	1	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	10	15	11	19	21	25	21	25	11	19	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714426124	X	149943329	C	CT	660	PASS	CD99L2	CCDS35427.1	r.?	-	-	Ins	intronic	I	149943329	149943331	1	30	590.181	-	-	1	1	1	CD99L2|CCDS35427.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CD99L2|CCDS35427.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	9	2	10	5	12	10	13	10	10	5	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714429170	Y	13691738	AAAACGAATGGAATGG	A	261	PASS	-	-	-	-	-	Del	-	D	13691738	13691771	15	10	493.364	-	-	2	1	1	-	-	./.	0	0	0	0	93	65	141	66	0	0	./.	9	0	16	0	342	109	438	115	18	0	1	1	1	1	1	1	1	1
2662649	PD18006a	PD18006b	2714429226	Y	13712148	AAATGG	A	277	PASS	-	-	-	-	-	Del	-	D	13712148	13712176	5	13	657.217	-	-	5	1	1	-	-	./.	0	0	0	0	27	36	27	36	0	0	./.	0	12	0	16	64	130	64	131	0	20	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716734078	1	7892077	GTTTTCTTGGTGAGGAGGATTTTAACAACAAATTTAAATATTTTAATATATATGGGTCTAATCAGGTTATCAGTTTCTTAGTGATCTTTGGTAATTTGTATCTTTCAAGAAATGTATCTA	G	319	PASS	PER3	CCDS89.1	r.?	-	-	Del	intronic	D	7892077	7892201	119	40	591.103	-	-	1	1	1	PER3|CCDS89.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PER3|CCDS89.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	17	25	17	0	0	./.	7	4	0	0	15	30	22	34	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716738049	1	19016077	C	CA	540	PASS	PAX7	CCDS44074.1	r.?	-	-	Ins	intronic	I	19016077	19016087	1	18	471.588	-	-	9	1	1	PAX7|CCDS44074.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PAX7|CCDS44074.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	1	8	6	12	17	38	17	38	6	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716740324	1	25404592	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	25404592	25404599	1	20	371.942	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	3	4	4	5	31	12	31	12	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716740456	1	25920758	AT	A	420	PASS	-	-	-	-	-	Del	-	D	25920758	25920768	1	20	376.156	-	-	9	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	4	3	9	6	21	18	21	18	9	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716740487	1	26108578	G	GA	300	PASS	MAN1C1	CCDS265.1	r.?	-	-	Ins	intronic	I	26108578	26108588	1	12	262.06	-	-	9	1	1	MAN1C1|CCDS265.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAN1C1|CCDS265.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	24	18	24	0	0	./.	2	3	0	1	20	34	20	34	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716743510	1	36163893	GT	G	600	PASS	-	-	-	-	-	Del	-	D	36163893	36163903	1	27	537.366	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	8	2	11	5	24	23	24	23	11	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716743857	1	37550082	AG	A	840	PASS	-	-	-	-	-	Del	-	D	37550082	37550085	1	63	733.047	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	6	8	9	9	34	33	34	33	9	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716745604	1	43159704	T	TG	269	PASS	YBX1	CCDS470.1	r.?	-	-	Ins	intronic	I	43159704	43159705	1	10	258.448	-	-	0	1	1	YBX1|CCDS470.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	YBX1|CCDS470.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	17	23	17	0	0	./.	4	1	4	2	31	24	31	24	4	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716745770	1	43756160	AGACTG	A	298	PASS	-	-	-	-	-	Del	-	D	43756160	43756168	5	15	321.216	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	2	7	3	34	23	34	23	7	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716751933	1	64443079	AG	A	360	PASS	ROR1	CCDS626.1	r.?	-	-	Del	intronic	D	64443079	64443081	1	16	322.42	-	-	1	1	1	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	3	3	4	4	30	22	30	22	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716752399	1	65830790	CT	C	300	PASS	DNAJC6	CCDS30739.1	r.?	-	-	Del	intronic	D	65830790	65830800	1	10	268.683	-	-	9	1	1	DNAJC6|CCDS30739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC6|CCDS30739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	4	1	4	1	32	27	32	27	4	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716752410	1	65859548	CTTGTGATAG	C	261	PASS	DNAJC6	CCDS30739.1	r.?	-	-	Del	intronic	D	65859548	65859560	9	30	480.619	-	-	1	1	1	DNAJC6|CCDS30739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC6|CCDS30739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	5	4	5	4	27	17	27	17	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716752483	1	66077551	ATT	A	447	PASS	LEPR	CCDS631.1	r.?	-	-	Del	intronic	D	66077551	66077555	2	30	480.619	-	-	3	1	1	LEPR|CCDS631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LEPR|CCDS631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	5	4	5	5	30	25	30	25	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716753752	1	70596173	ATTTCTCC	A	261	PASS	-	-	-	-	-	Del	-	D	70596173	70596184	7	28	482.425	-	-	1	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	3	6	3	7	31	29	31	29	3	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716754336	1	72524822	A	AG	420	PASS	NEGR1	CCDS661.1	r.?	-	-	Ins	intronic	I	72524822	72524823	1	20	371.942	-	-	0	1	1	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	4	3	5	3	30	27	30	27	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716754960	1	74113592	GGAGTTGACAGC	GACAA	319	PASS	-	-	-	-	-	Complex	-	DI	74113593	74113603	11	40	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	4	7	0	0	23	28	23	28	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716756511	1	79092363	A	AT	660	PASS	IFI44L	CCDS687.2	r.?	-	-	Ins	intronic	I	79092363	79092372	1	30	583.878	-	-	8	1	1	IFI44L|CCDS687.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	IFI44L|CCDS687.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	20	18	20	0	0	./.	9	2	14	4	27	26	27	29	14	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716758015	1	83788343	GA	G	512	PASS	-	-	-	-	-	Del	-	D	83788343	83788347	1	42	591.103	-	-	3	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	6	5	9	6	17	30	17	30	9	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716758519	1	85450498	CA	C	300	PASS	MCOLN2	CCDS30762.1	r.?	-	-	Del	intronic	D	85450498	85450503	1	12	268.683	-	-	4	1	1	MCOLN2|CCDS30762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCOLN2|CCDS30762.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	5	3	34	25	34	25	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716758556	1	85547737	CA	C	420	PASS	WDR63	CCDS702.1	r.?	-	-	Del	intronic	D	85547737	85547743	1	18	376.156	-	-	5	1	1	WDR63|CCDS702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR63|CCDS702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	25	27	25	0	0	./.	2	5	4	7	23	38	23	38	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716759207	1	87728791	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	87728791	87728798	1	20	371.942	-	-	6	1	1	-	-	./.	0	0	0	0	15	20	16	21	0	0	./.	4	3	4	6	32	33	32	33	4	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716767155	1	113758893	TGAGATTTGGGTG	T	464	PASS	-	-	-	-	-	Del	-	D	113758893	113758907	12	80	858.582	-	-	1	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	7	9	8	9	23	35	23	35	8	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716770333	1	142685917	AC	A	266	PASS	-	-	-	-	-	Del	-	D	142685917	142685923	1	30	483.027	-	-	5	1	1	-	-	./.	0	0	0	0	25	44	25	44	0	0	./.	4	5	4	5	53	83	53	83	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716773520	1	148894493	GGAAGGTT	GGTAA	259	PASS	-	-	-	-	-	Complex	-	DI	148894494	148894500	7	21	0	-	-	0	1	1	-	-	./.	0	0	0	0	38	16	38	16	0	0	./.	6	2	0	0	78	66	78	66	6	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716774490	1	151275424	CCCA	C	358	PASS	PI4KB	CCDS993.1	r.?	-	-	Del	intronic	D	151275424	151275430	3	20	361.707	-	-	1	1	1	PI4KB|CCDS993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI4KB|CCDS993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	3	4	4	25	27	25	27	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716778549	1	163266580	C	CCCAAAATATGACTG	493	PASS	-	-	-	-	-	Ins	-	I	163266580	163266595	14	84	770.232	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	11	6	7	4	34	32	39	34	11	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716779012	1	164625533	C	CA	540	PASS	PBX1	CCDS1246.1	r.?	-	-	Ins	intronic	I	164625533	164625535	1	24	478.211	-	-	1	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	2	7	3	13	21	39	22	41	3	13	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716780473	1	169002013	CTTTATTAAAAG	C	290	PASS	-	-	-	-	-	Del	-	D	169002013	169002027	11	36	537.366	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	5	5	5	5	35	29	35	29	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716781883	1	173217720	GA	G	300	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173217720	173217727	1	12	268.683	-	-	6	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	2	6	4	39	34	39	34	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716781886	1	173252214	AG	A	480	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173252214	173252217	1	25	428.689	-	-	2	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	4	7	4	17	24	17	24	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716782310	1	174355019	AGCTCTTAAAAATAGTTTT	A	290	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Del	intronic	D	174355019	174355041	18	32	533.754	-	-	1	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	3	7	4	7	35	40	35	40	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716784873	1	181622819	CTCTTTT	C	377	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181622819	181622828	6	56	698.576	-	-	1	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	7	6	8	11	21	33	21	33	8	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716787814	1	190465042	ACATAAATGACATTTTAGAAAAAATT	A	290	PASS	-	-	-	-	-	Del	-	D	190465042	190465070	25	36	537.366	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	5	4	4	43	36	44	37	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716788161	1	191415740	TTTTTTGTTTTCCATTTGCTTTGTAGATC	T	304	PASS	-	-	-	-	-	Del	-	D	191415740	191415771	28	42	591.103	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	6	5	4	3	20	29	22	31	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716788226	1	191667220	T	TG	900	PASS	-	-	-	-	-	Ins	-	I	191667220	191667222	1	70	796.416	-	-	1	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	6	9	13	11	30	30	30	31	13	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716788237	1	191710727	CACTAATGAGTAA	CAAAT	348	PASS	-	-	-	-	-	Complex	-	DI	191710728	191710739	12	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	11	1	0	0	38	19	38	19	11	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716788571	1	192758151	GTTTA	G	809	PASS	-	-	-	-	-	Del	-	D	192758151	192758159	4	64	750.506	-	-	1	1	-	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	7	7	9	8	26	47	26	47	9	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716788827	1	193550940	GT	G	960	PASS	-	-	-	-	-	Del	-	D	193550940	193550949	1	80	858.582	-	-	8	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	7	9	13	10	36	31	36	31	13	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716788920	1	193745456	GATTAACATTTGGCTCCTC	G	290	PASS	-	-	-	-	-	Del	-	D	193745456	193745479	18	36	537.366	-	-	1	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	5	5	5	4	27	24	27	25	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716789270	1	194634168	TA	T	1080	PASS	-	-	-	-	-	Del	-	D	194634168	194634176	1	100	966.657	-	-	7	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	9	9	12	11	37	27	37	27	12	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716791986	1	201705592	CTCCCATAAACTATCTT	C	522	PASS	NAV1	CCDS1414.1	r.?	-	-	Del	intronic	D	201705592	201705611	16	91	964.249	-	-	1	1	1	NAV1|CCDS1414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAV1|CCDS1414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	12	6	12	7	34	36	34	36	12	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716793239	1	204449746	TGG	T	480	PASS	PIK3C2B	CCDS1446.1	r.?	-	-	Del	intronic	D	204449746	204449751	2	25	429.893	-	-	4	1	1	PIK3C2B|CCDS1446.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PIK3C2B|CCDS1446.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	4	4	5	6	22	31	22	31	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716793641	1	205580854	AATTC	A	716	PASS	ELK4	CCDS1456.1	r.6452_6455delGAAU	c.?	p.?	Del	3'UTR variant	D	205580854	205580862	4	55	752.312	-	-	1	1	1	ELK4|CCDS1456.1|r.6452_6455delGAAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ELK4|CCDS1456.1|r.6452_6455delGAAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	22	18	22	18	0	0	./.	10	4	12	4	36	28	36	28	12	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716793642	1	205581273	AATGGATTATTAT	A	725	PASS	ELK4	CCDS1456.1	r.6025_6036delAUAAUAAUCCAU	c.?	p.?	Del	3'UTR variant	D	205581273	205581286	12	170	1343.42	-	-	1	1	1	ELK4|CCDS1456.1|r.6025_6036delAUAAUAAUCCAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ELK4|CCDS1456.1|r.6025_6036delAUAAUAAUCCAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	16	17	16	0	0	./.	16	9	16	10	37	35	37	35	16	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716794844	1	209715394	AGCTGCCCACACTTGTTCTT	A	377	PASS	-	-	-	-	-	Del	-	D	209715394	209715416	19	50	693.759	-	-	1	1	1	-	-	./.	0	0	0	0	17	26	17	26	0	0	./.	4	9	4	8	30	36	30	37	4	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716797272	1	216293328	G	GT	300	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	216293328	216293338	1	12	263.867	-	-	9	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	3	36	44	36	44	2	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716797532	1	217023522	CAAAT	C	269	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	217023522	217023532	4	12	268.683	-	-	2	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	2	3	3	6	40	34	40	34	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716797931	1	218102746	CCATCAAACTGCC	CTGA	377	PASS	-	-	-	-	-	Complex	-	DI	218102747	218102758	12	54	0	-	-	0	1	1	-	-	./.	0	0	0	0	8	23	8	23	0	0	./.	8	5	0	0	27	33	27	33	8	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716798282	1	219123528	AGCAAATGATT	A	319	PASS	-	-	-	-	-	Del	-	D	219123528	219123541	10	42	588.694	-	-	1	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	5	6	5	6	41	38	41	38	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716798802	1	220625095	TTGAGCAAGGACAAGAAACTTTGCCTTTGATCTCTCCAGCAGTGCCTGGCTCTAGCAGACTCTCTTCTCTCGAAGTATGTGAATCTATTTAAATGTTATCTAACCACTCTCTGTATGCTGA	T	551	PASS	-	-	-	-	-	Del	-	D	220625095	220625218	120	98	1021	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	6	13	0	0	24	32	30	45	6	13	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716799622	1	223059211	TAC	T	300	PASS	DISP1	ENST00000360254	r.?	-	-	Del	intronic	D	223059211	223059229	2	10	266.275	-	-	8	1	-	DISP1|ENST00000360254|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DISP1|ENST00000360254|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	4	2	4	35	33	35	33	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716801916	1	228971906	GTCCTTCCGCGTGGC	G	261	PASS	-	-	-	-	-	Del	-	D	228971906	228971923	14	30	483.629	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	4	4	33	19	34	19	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716802236	1	229942420	GCTGGTTATTTATCAGGGAGAATGTGTTGTGAAACTGATGAGCTGCCATGTCGAGGCTGCAAGAAGGGACGGGAGTCTGGCTGGGGCATCTGGTGATTGGCTAAAGTCAGCGATGGAGCAAACCTTCTGTTTTTGTTTTTCCAGGGCTAGCTTCTGTTTAACTCTTAGGAAATAATCCAGTATAAGTTAACAAGGAAGGAAGTATACTGAGGTGTCACTGACCTCCCTTCTTGTCATGGAATTTAGTTTTCCAAGTTTTTTCTGGGGCATCCTTGGCCAAGCAGGGTTCATTCGCTCTGTTGGCAGGGCTCAAGATTTTATTTTTATTTCACACTCAGAAGGGGCCCGACGCTTAGGATTCACCACCTCCTCAGGAAATCTGCCTGTGCTCTGTGGGATATGGTGGCATTTCTATGGGGGATGTTTCTCGGCCACTTGTGGCCCTTAGTTCTTGGGTCTTGAGTCCCCTCAACCATCCCCACCTGCCCAAGTCTCTCACAACTTCATTCTTCCTCTTTTTATGAGGTAGCAAGATAAGTTCTGCTCTGTACTCTTGGCCTCAGTGTCCTCTTCTGTAATGTGGGGATTTAGGATGTTATCTCTTAGAAAACATCTGAAACATACTTGGCTCTCAAAGAATGCTATCCGGTGCCTATTTCTCAAACCACGTGCCCAGATTCCTGACCAATCAGCTGCTCATATTTCTATGTCTGGTTCCAGAACAAAATTTTGTCACAGCTAAGAATTATAAAATTTGTACCCCTCAGCCTATAGTGTAAAAATAGCTGCCAGAAGAGGCCATAGATATATCCAGAACAGAGATTAGAATGCTTCACTGAAGACTTGTTTATTGTAGTAAATGACCCAAACTTAAATCTTAAATGTCCAGCCAGAAGAGATGAGTAAACCTAAGGTAACATTATACAATGGAATACATGACAACTACCAAACTCATTTTAAATATTAATAGATTGCATAATATATTGCCAAGTGAATAATACAGGTGACAGAACTGTATTTACAATCTTATTTCATTTTTGTAAAATAAATACTTCACACACACAACACACACACACACACACACACCGCACAGTGTTGCAGGAAGCATATGCACCAGATGTTACCTGTGGTTATCAGAAGGATGAGGCAAGGGGCCATGTTCTTGTCTTGCTGACCTGCATTTCCTATAAGGTTGCAGTGGAGGAGGCCCCTCAGGGCACCACACCCGGGCCCTCTCCTTTCCTCTGCCCAACCCCACTTCAAGCTTATAATCAAATTCTAATCAGCAAGTGGGTACTCAATTGCCGAATGTTTTTGGGCTCATGTTTGCCAATTTAAAAACAGCAGACGTTTCTAGCCAATTATTGCAGTGACTCTAGAAGAGTGATTACTTTCTCCGTCTTGTGGCTCTGATGATTCTTCAGGAAATTGAGCTGAGAGTTTAATGTCAAGTGGCTTTGTGAACAGCATTTTTATTGGAAGTTGAGCCTTTGATTTCTGAGTTGTGAAGCAACTCTGTTCTATTCGAGAGAATGTTTTCTTTGACCATGGAAGACATCAAATTTGGTTCAAACAAGAGGACCTTGTGTGAGGACTACATACACAGGTGATCCTAAAGTATCAGCTTGACCCCAATCACAGTGTTTACGTGTTTAGGTAGCTCCAAAATGTTTGAAGCAGCTTCCTAATGAGCAGCTGGTTTTGTTGTGAAATTGTGTTTCTAAACAGCAACCTCTCAGAGCAGCTGAGAAATAATTGTAAAATAATAATTATTAATAATTGTATGTAAATAATGATTAATTAATCATTAATAATGAATGATAAATAATTATTAAGAATAATTGAAATGATTCCTAATGTTTTTATTCTGTTTTACTAATAATAAGTAAAGATTTGACTTTTGTGTTTTATTTTATAGTTTGCAAACTACTTTTTAAAAACAACTTTATTGGGATATAATTTTCATACCATACAACTAACTCCCTTTTTTTTGAGACGGGTTTTTGCTCTGGCACCTGGGCTTCTGGTAGCGCAGTCATGGCTCACTGCAGCTTCAATCTCCCAAACCCAAATGATCCTCCCGTCTCAGCCTTCCCAGAAGCTGGGACTATAGGTGTGTGCCGCCACGCCTGGCTAATTTTAAAATTTTTGTAGAGATAGAATCTCCCTATGTTGCCCAGGCTGGCCTCAAACTGCTGGGCTCAAGTGATCCTCCTTCCTCAACCTCCCAAAGTACTGGGATTACAGGCATGAGCCACTGTACCCAGCCAATTTGCCCATTTAAAGTGTACAATCTAATGGTTTTGAGTATATTTGCAGAGTTGTGCAACCATCACCACAATCTAACTTCAGAACAATTTTTTCACCTCAAGAAGAAATTCTGCCTAATTGCAGTCACTTCGTATTCTCCATCTCAACTCTCATTCCTAGTCTTATGAAATGTAGGGGATAAGAGAAAACTTCCCCTTCACCCTTTGAAGGTTCTCTAACAAAAGGCAGAATAACAGGAGAAAAGGTACACACATTTATTAACGTGTATGGTGGGGTTGGGATGTGGGCAGGGGAGTAGTGGATCACAGGGGGATTGCCCACCAACCCAGTGTGGCACAGAAGCTTTACGGGGAAGAGAGGAGATGGAGA	G	319	PASS	-	-	-	-	-	Del	-	D	229942420	229945063	2639	42	591.103	-	-	1	1	-	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	6	5	0	0	24	28	30	33	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716802375	1	230365612	GTAGTT	G	749	PASS	GALNT2	CCDS1582.1	r.?	-	-	Del	intronic	D	230365612	230365620	5	56	698.576	-	-	1	1	1	GALNT2|CCDS1582.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT2|CCDS1582.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	7	6	8	7	48	35	48	35	8	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716802613	1	231032960	GTGTT	G	745	PASS	-	-	-	-	-	Del	-	D	231032960	231032973	4	60	804.243	-	-	3	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	11	4	15	6	44	31	44	31	16	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716803630	1	233991957	TATA	T	300	PASS	-	-	-	-	-	Del	-	D	233991957	233991961	3	12	268.683	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	3	3	21	28	21	28	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716803946	1	234891362	CGGTCACGT	C	435	PASS	-	-	-	-	-	Del	-	D	234891362	234891373	8	60	806.049	-	-	1	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	11	4	12	4	43	32	43	32	12	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716803947	1	234891984	GA	G	360	PASS	-	-	-	-	-	Del	-	D	234891984	234891993	1	12	322.42	-	-	8	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	1	5	5	7	36	38	36	38	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716803948	1	234892254	CG	C	420	PASS	-	-	-	-	-	Del	-	D	234892254	234892258	1	20	372.544	-	-	3	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	4	3	7	7	34	30	34	30	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716805331	1	237963793	GTCACCT	G	377	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237963793	237963802	6	56	697.974	-	-	1	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	6	7	6	7	25	27	25	27	6	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716805523	1	238544454	GTGG	GA	805	PASS	-	-	-	-	-	Complex	-	DI	238544455	238544457	3	80	0	-	-	0	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	9	7	0	0	37	31	37	31	9	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716805821	1	239226709	CTGTTCTATTTTATACACT	C	261	PASS	-	-	-	-	-	Del	-	D	239226709	239226730	18	30	483.629	-	-	1	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	4	5	3	3	28	26	29	28	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716805992	1	239765228	CT	C	269	PASS	-	-	-	-	-	Del	-	D	239765228	239765231	1	6	268.081	-	-	2	1	1	-	-	./.	0	0	0	0	1	10	1	10	0	0	./.	0	5	0	6	1	32	1	32	0	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716806545	1	240917197	CT	C	389	PASS	-	-	-	-	-	Del	-	D	240917197	240917207	1	20	376.156	-	-	9	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	3	4	9	13	17	30	17	30	9	13	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716806612	1	241142021	ATAGT	A	656	PASS	RGS7	CCDS31071.1	r.?	-	-	Del	intronic	D	241142021	241142032	4	54	698.576	-	-	2	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	8	5	13	7	39	34	39	34	13	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716807087	1	242138632	CATGGCAGGATCT	CATGA	348	PASS	-	-	-	-	-	Complex	-	DI	242138633	242138644	12	45	0	-	-	0	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	8	0	0	28	29	29	29	4	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716809324	1	247325986	C	CA	809	PASS	ZNF124	CCDS31089.1	r.?	-	-	Ins	intronic	I	247325986	247325994	1	60	731.24	-	-	7	1	1	ZNF124|CCDS31089.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF124|CCDS31089.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	20	17	0	0	./.	9	5	10	5	49	28	50	28	10	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716809366	1	247378223	G	GT	1260	PASS	-	-	-	-	-	Ins	-	I	247378223	247378231	1	120	1115.22	-	-	7	1	1	-	-	./.	0	0	0	0	22	19	23	19	0	0	./.	14	7	17	14	46	42	46	42	17	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716814231	10	11117083	AGTGAATGGTCTTGTCCCTTGTCAAGTGTGGCTTGATT	A	406	PASS	CELF2	CCDS44354.1	r.?	-	-	Del	intronic	D	11117083	11117123	37	63	754.01	-	-	1	1	1	CELF2|CCDS44354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELF2|CCDS44354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	8	6	4	3	20	12	25	15	9	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716816461	10	16960910	T	TA	1140	PASS	CUBN	CCDS7113.1	r.?	-	-	Ins	intronic	I	16960910	16960917	1	110	1008.46	-	-	6	1	1	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	20	22	20	0	0	./.	10	9	14	12	33	25	33	26	14	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716817808	10	20754863	T	TA	1080	PASS	-	-	-	-	-	Ins	-	I	20754863	20754871	1	75	959.378	-	-	7	1	1	-	-	./.	0	0	0	0	24	30	24	31	0	0	./.	4	14	6	19	30	42	30	42	6	19	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716819485	10	26328539	TGGTA	T	360	PASS	MYO3A	CCDS7148.1	r.?	-	-	Del	intronic	D	26328539	26328547	4	12	323.405	-	-	1	1	1	MYO3A|CCDS7148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO3A|CCDS7148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	5	1	5	2	29	18	29	18	5	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716819745	10	27042537	AAATACTTATT	A	261	PASS	ABI1	CCDS7150.1	r.?	-	-	Del	intronic	D	27042537	27042552	10	30	485.108	-	-	1	1	1	ABI1|CCDS7150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABI1|CCDS7150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	4	5	5	5	28	39	28	39	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716819847	10	27190312	TG	T	600	PASS	-	-	-	-	-	Del	-	D	27190312	27190315	1	27	539.008	-	-	2	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	8	3	9	27	38	27	38	3	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716820817	10	29134667	TGATGGTACGA	T	290	PASS	C10orf126	ENST00000375520	r.?	-	-	Del	upstream	D	29134667	29134681	10	27	539.008	-	-	1	1	1	C10orf126|ENST00000375520|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C10orf126|ENST00000375520|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	19	15	19	15	0	0	./.	8	2	12	2	32	19	32	20	12	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716823645	10	36102881	TTGCTTTTGCTGTGGGGAG	T	406	PASS	-	-	-	-	-	Del	-	D	36102881	36102902	18	60	752.806	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	9	5	8	4	28	26	29	27	9	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716823685	10	36204208	TC	T	780	PASS	-	-	-	-	-	Del	-	D	36204208	36204212	1	44	700.711	-	-	3	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	3	10	6	16	28	35	28	35	6	16	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716824612	10	38985787	AGATTTGCTAGTCT	A	522	PASS	-	-	-	-	-	Del	-	D	38985787	38985803	13	100	965.399	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	9	9	9	8	47	20	47	20	9	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716826251	10	42823808	TTA	T	420	PASS	-	-	-	-	-	Del	-	D	42823808	42823813	2	20	377.306	-	-	2	1	1	-	-	./.	0	0	0	0	24	18	24	18	0	0	./.	4	3	5	5	37	34	37	34	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716829973	10	56554682	T	TA	720	PASS	PCDH15	CCDS44404.1	r.?	-	-	Ins	intronic	I	56554682	56554685	1	48	639.585	-	-	2	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	5	7	7	10	26	39	26	39	7	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716830813	10	58741435	TAA	T	660	PASS	-	-	-	-	-	Del	-	D	58741435	58741439	2	40	592.307	-	-	3	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	4	7	7	12	32	52	32	52	7	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716834694	10	69540884	TCCCTAGCAGAG	T	464	PASS	-	-	-	-	-	Del	-	D	69540884	69540899	11	72	861.209	-	-	1	1	1	-	-	./.	0	0	0	0	12	28	12	28	0	0	./.	11	5	11	5	36	33	36	33	11	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716835878	10	72027290	GCTGGCCCTGCT	G	261	PASS	NPFFR1	ENST00000277942	r.?	-	-	Del	upstream	D	72027290	72027305	11	24	485.108	-	-	1	1	1	NPFFR1|ENST00000277942|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NPFFR1|ENST00000277942|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	14	13	14	0	0	./.	7	2	7	2	33	24	33	24	7	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716837184	10	75917076	CA	C	600	PASS	ADK	CCDS7343.1	r.?	-	-	Del	intronic	D	75917076	75917083	1	27	539.008	-	-	6	1	1	ADK|CCDS7343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADK|CCDS7343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	2	8	5	9	35	40	35	40	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716837658	10	77358059	GA	G	900	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	intronic	D	77358059	77358062	1	66	805.502	-	-	2	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	5	10	7	11	28	40	28	40	7	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716839163	10	82734564	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	82734564	82734565	1	12	266.494	-	-	0	1	1	-	-	./.	0	0	0	0	24	17	25	17	0	0	./.	2	3	0	0	22	27	22	27	2	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716842671	10	94054790	T	TA	329	PASS	CPEB3	CCDS31246.1	r.?	-	-	Ins	upstream	I	94054790	94054800	1	12	319.793	-	-	9	1	1	CPEB3|CCDS31246.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	MARCH5|CCDS7420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	22	14	22	0	0	./.	1	5	4	8	14	40	14	41	4	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716844679	10	99626300	ATGTGTGTAAGTGCAG	A	493	PASS	GOLGA7B	CCDS31265.1	r.1413_1427delUGUGUGUAAGUGCAG	c.?	p.?	Del	3'UTR variant	D	99626300	99626320	15	78	915.712	-	-	1	1	-	GOLGA7B|CCDS31265.1|r.1413_1427delUGUGUGUAAGUGCAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GOLGA7B|CCDS31265.1|r.1413_1427delUGUGUGUAAGUGCAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	24	17	24	0	0	./.	12	5	10	6	36	22	38	22	12	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716844939	10	100561223	CCCCATCAAAAAACTAT	C	493	PASS	HPSE2	CCDS7477.1	r.?	-	-	Del	intronic	D	100561223	100561241	16	88	916.314	-	-	1	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	23	24	23	0	0	./.	10	7	10	7	37	22	37	22	10	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716846521	10	104804337	CT	C	480	PASS	CNNM2	CCDS44474.1	r.?	-	-	Del	intronic	D	104804337	104804343	1	25	422.778	-	-	5	1	1	CNNM2|CCDS44474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNNM2|CCDS44474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	4	4	10	8	41	17	41	17	10	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716847350	10	107476279	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	107476279	107476285	2	7	323.405	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	0	6	0	7	21	32	21	32	0	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716849982	10	115587838	AAGAACATAACT	A	551	PASS	-	-	-	-	-	Del	-	D	115587838	115587853	11	110	1024.12	-	-	1	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	9	10	9	11	33	26	33	26	9	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716856083	10	132354125	GAGATGCGT	G	290	PASS	-	-	-	-	-	Del	-	D	132354125	132354139	8	35	539.008	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	6	4	6	4	30	21	30	21	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716864593	11	23026372	AAAAAGTTGAAAAAT	A	319	PASS	-	-	-	-	-	Del	-	D	23026372	23026389	14	42	594.521	-	-	1	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	5	7	6	28	33	28	33	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716864669	11	23166561	GAGTT	GA	689	PASS	-	-	-	-	-	Complex	-	DI	23166562	23166565	4	33	0	-	-	0	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	2	10	0	0	17	26	17	26	2	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716865625	11	25608900	CA	C	780	PASS	-	-	-	-	-	Del	-	D	25608900	25608905	1	54	702.616	-	-	4	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	5	8	5	9	19	24	19	24	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716865688	11	25722486	GCATAAAACATGCCTTATTATGA	G	406	PASS	-	-	-	-	-	Del	-	D	25722486	25722512	22	60	755.459	-	-	1	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	5	9	4	8	20	19	21	20	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716866165	11	26946472	AT	A	600	PASS	-	-	-	-	-	Del	-	D	26946472	26946477	1	35	539.872	-	-	4	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	4	10	5	26	23	26	23	10	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716867694	11	32346344	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	32346344	32346345	1	16	320.672	-	-	0	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	3	5	3	9	25	10	25	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716874804	11	57707227	TA	T	509	PASS	-	-	-	-	-	Del	-	D	57707227	57707232	1	28	486.426	-	-	4	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	6	3	9	4	25	25	25	25	9	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716874964	11	58175995	TAATTTAATTTTTATTTTACTTTTTTTGATTTTTCTCTAAGATATCTCCTTACCGATTTTCTTAACACTTATCTACCTTATCACCACAATTCTGGCCTGGGAATGCTTTTCTTTTCCAAAAAAGGAGACAGATTCATCCTTTTGCACACAGATTCATCGCTTTGCACTGTTGCTTCTGAGCCCACACCACACTCCCAAGCAGACTTATCACATCTCTCTTAGTACAAGCCAGTGTCATGATTAAACATTTGTTCTGTACACCAAGGTTGTTGCTTCACCTCAAATTTGAGTAAGAAATGTAGCCTTTTCAAACTTCAGCTTCTCTTCTGTAAGGAAGAAGAAAATACTATCTTGTCATTCTCATAATATTTTCAA	T	261	PASS	-	-	-	-	-	Del	-	D	58175995	58176372	374	28	484.62	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	3	6	0	0	16	9	19	15	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716875651	11	60375443	GTTTCTCTTTAGTGTCC	G	406	PASS	-	-	-	-	-	Del	-	D	60375443	60375464	16	64	756.663	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	7	7	7	7	24	20	24	20	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716877783	11	67367489	TG	T	300	PASS	C11orf72	ENST00000333139	r.?	-	-	Del	downstream	D	67367489	67367491	1	12	270.237	-	-	1	1	1	C11orf72|ENST00000333139|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C11orf72|ENST00000333139|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	9	12	9	0	0	./.	3	2	5	5	24	28	24	28	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716878448	11	69283014	CCTCTGCAAGACAGGG	CTA	261	PASS	-	-	-	-	-	Complex	-	DI	69283015	69283029	15	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	12	23	12	23	0	0	./.	3	6	0	0	13	17	13	18	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716882382	11	83421649	AC	A	809	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	83421649	83421651	1	55	756.663	-	-	1	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	10	4	14	5	27	14	27	14	14	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716898489	12	5124872	ATGGGAGTGT	A	609	PASS	-	-	-	-	-	Del	-	D	5124872	5124884	9	126	1132.57	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	8	13	11	14	23	20	23	20	11	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716902814	12	18986878	GT	G	480	PASS	-	-	-	-	-	Del	-	D	18986878	18986882	1	21	431.31	-	-	3	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	6	2	7	4	20	15	20	15	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716905044	12	25669507	AAT	A	478	PASS	IFLTD1	CCDS44849.1	r.?	-	-	Del	intronic	D	25669507	25669514	2	28	485.901	-	-	3	1	1	IFLTD1|CCDS44849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFLTD1|CCDS44849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	3	6	4	7	27	18	27	18	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716905234	12	26366886	GGCACATGGTA	G	493	PASS	SSPN	CCDS8707.1	r.?	-	-	Del	intronic	D	26366886	26366898	10	88	917.813	-	-	1	1	1	SSPN|CCDS8707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSPN|CCDS8707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	10	7	11	7	19	15	20	15	12	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716906708	12	31174844	TA	T	1080	PASS	AC008013.1	ENST00000500527	r.883delU	-	-	Del	non-coding variant	D	31174844	31174847	1	100	971.802	-	-	2	1	1	AC008013.1|ENST00000500527|r.883delU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	AC008013.1|ENST00000500527|r.883delU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	11	25	11	25	0	0	./.	9	9	11	10	21	20	21	20	11	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716908741	12	39339146	TAAGA	T	300	PASS	-	-	-	-	-	Del	-	D	39339146	39339159	4	12	269.945	-	-	3	1	1	-	-	./.	0	0	0	0	29	19	29	19	0	0	./.	3	2	4	3	36	16	36	16	4	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716910770	12	45670660	ATAAT	A	807	PASS	ANO6	CCDS31782.1	r.?	-	-	Del	intronic	D	45670660	45670667	4	60	792.978	-	-	1	1	1	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	11	4	12	18	34	18	34	4	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716910910	12	46164910	TATTTCTTTTCC	T	377	PASS	ARID2	CCDS31783.1	r.?	-	-	Del	intronic	D	46164910	46164929	11	54	701.255	-	-	1	1	1	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	21	23	21	0	0	./.	5	8	7	9	32	42	32	42	7	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716910949	12	46347160	ATATT	A	389	PASS	SFRS2IP	CCDS8748.2	r.?	-	-	Del	intronic	D	46347160	46347167	4	20	377.923	-	-	1	1	1	SFRS2IP|CCDS8748.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS2IP|CCDS8748.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	4	3	4	29	32	29	32	3	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716913094	12	51664135	AGCAGAGGCCGAACGAGGACCCCGAGCGGAGGAAGCCGCGGGTGGCGCGCGGGGTTGGC	A	522	PASS	SMAGP	CCDS44889.1	r.10_67del58	c.?	p.?	Del	5'UTR variant	D	51664135	51664204	58	100	964.578	-	-	1	1	1	SMAGP|CCDS44889.1|r.10_67del58|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	SMAGP|CCDS44889.1|r.10_67del58|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	16	15	16	15	0	0	./.	9	9	0	0	20	19	29	28	9	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716917603	12	64194346	G	GA	300	PASS	TMEM5	CCDS8966.1	r.?	-	-	Ins	intronic	I	64194346	64194354	1	12	266.333	-	-	7	1	1	TMEM5|CCDS8966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM5|CCDS8966.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	3	2	8	3	30	50	31	50	8	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716918858	12	67294364	CTCTAGAGCCTA	C	435	PASS	-	-	-	-	-	Del	-	D	67294364	67294379	11	70	809.835	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	9	6	11	8	46	34	46	34	11	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716919620	12	69551835	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	69551835	69551842	1	30	480.483	-	-	6	1	1	-	-	./.	0	0	0	0	26	14	26	19	0	0	./.	4	5	6	9	44	36	45	39	6	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716919709	12	69721706	GGAGCTTGCAGT	G	493	PASS	-	-	-	-	-	Del	-	D	69721706	69721722	11	84	903.364	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	6	11	7	11	26	30	26	30	7	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716921356	12	74962618	TCA	T	360	PASS	-	-	-	-	-	Del	-	D	74962618	74962623	2	16	323.934	-	-	2	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	3	3	4	5	32	39	32	39	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716921696	12	75889789	G	GGT	300	PASS	GLIPR1	CCDS9011.1	r.?	-	-	Ins	intronic	I	75889789	75889790	2	6	259.108	-	-	0	1	-	GLIPR1|CCDS9011.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GLIPR1|CCDS9011.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	0	5	1	4	19	39	19	39	1	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716922338	12	77453007	G	GA	300	PASS	E2F7	CCDS9016.1	r.?	-	-	Ins	intronic	I	77453007	77453017	1	10	266.935	-	-	9	1	1	E2F7|CCDS9016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	E2F7|CCDS9016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	16	0	0	./.	4	1	5	1	58	50	59	50	5	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716926084	12	88559722	CAA	C	360	PASS	TMTC3	CCDS9032.1	r.?	-	-	Del	intronic	D	88559722	88559727	2	15	323.934	-	-	4	1	1	TMTC3|CCDS9032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC3|CCDS9032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	4	2	4	2	41	43	41	43	4	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716927740	12	93335913	CTGGGCACGG	C	638	PASS	-	-	-	-	-	Del	-	D	93335913	93335926	9	108	1187.76	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	17	5	0	0	52	27	52	27	17	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716933557	12	107377904	CTGCTCCTG	C	290	PASS	MTERFD3	CCDS9111.1	r.?	-	-	Del	intronic	D	107377904	107377917	8	32	539.89	-	-	1	1	1	MTERFD3|CCDS9111.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MTERFD3|CCDS9111.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	7	4	8	20	26	20	26	4	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716937798	12	119032420	ATGGTTTCTCAG	A	493	PASS	-	-	-	-	-	Del	-	D	119032420	119032432	11	90	917.813	-	-	1	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	9	8	11	9	31	33	31	33	11	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716938304	12	120320900	TAGCCACAAAGTGGAAACTACCCAA	T	406	PASS	-	-	-	-	-	Del	-	D	120320900	120320926	24	55	755.846	-	-	1	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	10	4	10	4	43	16	43	16	10	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716943521	12	132871430	TGCCGTGGGC	T	261	PASS	GALNT9	CCDS41866.1	r.?	-	-	Del	intronic	D	132871430	132871443	9	30	485.901	-	-	1	1	1	GALNT9|CCDS41866.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GALNT9|CCDS41866.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	14	24	14	0	0	./.	5	4	5	5	35	23	35	23	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716948684	13	28950057	TTTTGCAAAAGATA	T	771	PASS	FLT1	CCDS9330.1	r.?	-	-	Del	intronic	D	28950057	28950075	13	204	1461.64	-	-	1	1	1	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	18	28	18	0	0	./.	16	11	16	11	63	60	63	60	17	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716951846	13	37987563	ACATTC	AGAT	956	PASS	-	-	-	-	-	Complex	-	DI	37987564	37987568	5	99	0	-	-	0	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	10	8	0	0	22	17	22	17	10	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716954391	13	46895973	CCTTG	CA	596	PASS	-	-	-	-	-	Complex	-	DI	46895974	46895977	4	49	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	31	13	31	0	0	./.	6	6	0	0	17	10	17	10	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716956908	13	54942241	CT	C	689	PASS	-	-	-	-	-	Del	-	D	54942241	54942245	1	48	649.886	-	-	3	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	5	7	6	9	21	20	21	20	6	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716957369	13	56299320	TC	T	480	PASS	-	-	-	-	-	Del	-	D	56299320	56299323	1	25	433.258	-	-	2	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	4	7	7	20	26	20	26	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716958526	13	60291382	AT	A	1080	PASS	DIAPH3	CCDS41898.1	r.?	-	-	Del	intronic	D	60291382	60291388	1	100	974.83	-	-	5	1	1	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	24	10	24	0	0	./.	9	9	10	12	31	31	31	31	10	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716959241	13	62614099	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	62614099	62614119	2	15	322.535	-	-	9	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	2	4	3	5	17	38	17	38	3	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716964421	13	79066338	GACT	G	509	PASS	-	-	-	-	-	Del	-	D	79066338	79066345	3	30	486.211	-	-	2	1	1	-	-	./.	0	0	0	0	32	15	32	15	0	0	./.	4	5	5	6	25	27	25	27	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716964497	13	79336674	TACTGTGGAGATAAAC	T	348	PASS	-	-	-	-	-	Del	-	D	79336674	79336692	15	49	649.886	-	-	1	1	1	-	-	./.	0	0	0	0	25	20	25	20	0	0	./.	6	6	6	6	17	22	17	22	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716964570	13	79734540	GTTA	G	960	PASS	-	-	-	-	-	Del	-	D	79734540	79734545	3	77	865.913	-	-	1	1	1	-	-	./.	0	0	0	0	22	24	22	24	0	0	./.	6	10	8	16	21	28	21	28	8	16	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716964948	13	81027418	ATG	A	689	PASS	-	-	-	-	-	Del	-	D	81027418	81027422	2	48	649.886	-	-	1	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	5	7	7	9	23	23	23	23	7	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716965616	13	83314964	GGCCTATCTCT	G	522	PASS	-	-	-	-	-	Del	-	D	83314964	83314979	10	96	974.227	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	11	9	10	24	20	24	21	9	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716968689	13	93958338	CACAT	C	569	PASS	GPC6	CCDS9469.1	r.?	-	-	Del	intronic	D	93958338	93958344	4	35	541.572	-	-	1	1	1	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	6	5	6	25	30	25	30	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716970775	13	100235401	GA	G	900	PASS	-	-	-	-	-	Del	-	D	100235401	100235403	1	72	811.756	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	7	8	9	11	19	30	19	30	9	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716971401	13	102038322	A	AT	300	PASS	NALCN	CCDS9498.1	r.?	-	-	Ins	intronic	I	102038322	102038332	1	12	267.776	-	-	9	1	1	NALCN|CCDS9498.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NALCN|CCDS9498.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	19	22	0	0	./.	3	2	4	2	31	23	31	23	4	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716971498	13	102322014	ATTGTAAAAC	A	319	PASS	ITGBL1	CCDS9499.1	r.?	-	-	Del	intronic	D	102322014	102322028	9	36	595.127	-	-	1	1	1	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	3	8	5	8	13	34	13	35	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716972399	13	105236176	AATATAAGTTGGTAGAAACCTTAGCC	A	406	PASS	-	-	-	-	-	Del	-	D	105236176	105236205	25	55	758.201	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	4	10	4	9	23	29	23	31	4	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716972879	13	106686564	G	GA	389	PASS	-	-	-	-	-	Ins	-	I	106686564	106686572	1	20	374.886	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	4	3	6	26	30	27	30	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716977529	14	23831020	TTTAA	T	449	PASS	EFS	CCDS9595.1	r.?	-	-	Del	intronic	D	23831020	23831027	4	24	434.054	-	-	1	1	1	EFS|CCDS9595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFS|CCDS9595.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	3	5	5	7	27	26	27	26	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716981280	14	36504451	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	36504451	36504459	1	6	268.273	-	-	7	1	1	-	-	./.	0	0	0	0	13	5	14	5	0	0	./.	5	0	6	0	23	1	23	1	6	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716982567	14	41289685	TTCA	T	420	PASS	-	-	-	-	-	Del	-	D	41289685	41289691	3	18	379.797	-	-	1	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	2	5	3	7	18	27	18	27	3	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716986163	14	52803371	AG	A	480	PASS	-	-	-	-	-	Del	-	D	52803371	52803373	1	25	433.452	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	4	4	5	17	23	17	23	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716988489	14	60694831	TG	T	780	PASS	-	-	-	-	-	Del	-	D	60694831	60694834	1	54	705.337	-	-	2	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	5	8	5	8	21	36	21	36	5	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716996205	14	87186706	AC	A	480	PASS	-	-	-	-	-	Del	-	D	87186706	87186708	1	21	434.054	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	2	6	3	10	23	25	23	25	3	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716997470	14	91840132	AGCT	A	600	PASS	CCDC88C	CCDS45151.1	r.?	-	-	Del	intronic	D	91840132	91840137	3	35	542.567	-	-	1	1	1	CCDC88C|CCDS45151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC88C|CCDS45151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	6	4	7	6	24	14	24	14	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716997587	14	92080642	C	CC	538	PASS	CATSPERB	CCDS32142.1	r.?	-	-	Ins	intronic	I	92080641	92080643	1	36	536.547	-	-	1	1	1	CATSPERB|CCDS32142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CATSPERB|CCDS32142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	12	0	0	./.	5	5	0	1	20	25	20	25	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2716997966	14	93129365	AG	A	540	PASS	RIN3	CCDS32144.1	r.?	-	-	Del	intronic	D	93129365	93129368	1	28	488.311	-	-	2	1	1	RIN3|CCDS32144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIN3|CCDS32144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	17	29	17	0	0	./.	3	6	4	7	16	19	16	19	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717005269	15	26663007	CTAAAGTGTATGCACCTAAAAACAAGCACCAAAATA	C	435	PASS	-	-	-	-	-	Del	-	D	26663007	26663045	35	66	813.158	-	-	1	1	1	-	-	./.	0	0	0	0	24	14	24	14	0	0	./.	10	5	8	4	38	31	40	32	10	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717006509	15	30335958	CTGAACAAT	C	551	PASS	ENSG00000215315	ENST00000400005	r.?	-	-	Del	upstream	D	30335958	30335969	8	104	1030	-	-	1	1	1	ENSG00000215315|ENST00000400005|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000215315|ENST00000400005|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	19	13	19	13	0	0	./.	7	12	9	12	28	29	28	29	9	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717006861	15	31720029	GAGAGAGGGGAAGTGCTACACTTTTAAACAACCAGATCTTCCA	G	261	PASS	-	-	-	-	-	Del	-	D	31720029	31720074	42	30	486.691	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	5	3	1	21	26	22	30	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717007008	15	32193386	TGAGGGTTTTG	T	319	PASS	-	-	-	-	-	Del	-	D	32193386	32193400	10	42	596.316	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	5	6	5	21	29	21	29	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717008009	15	34797874	AC	A	300	PASS	-	-	-	-	-	Del	-	D	34797874	34797879	1	10	266.838	-	-	4	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	5	1	31	20	31	20	5	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717010927	15	42805981	T	TG	300	PASS	SNAP23	CCDS10087.1	r.?	-	-	Ins	intronic	I	42805981	42805986	1	10	268.042	-	-	4	1	1	SNAP23|CCDS10087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNAP23|CCDS10087.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	18	0	0	./.	4	1	5	1	35	26	35	26	5	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717011790	15	45451006	ATC	A	269	PASS	DUOX1	CCDS32221.1	r.?	-	-	Del	intronic	D	45451006	45451012	2	10	271.053	-	-	2	1	1	DUOX1|CCDS32221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DUOX1|CCDS32221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	1	6	33	20	33	20	1	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717012476	15	47564344	ATGGAAAAGTTAGTT	A	290	PASS	-	-	-	-	-	Del	-	D	47564344	47564363	14	35	540.299	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	4	6	4	6	32	40	32	40	4	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717016091	15	57476927	GA	G	960	PASS	TCF12	CCDS10159.1	r.?	-	-	Del	intronic	D	57476927	57476930	1	80	860.143	-	-	2	1	1	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	11	24	11	0	0	./.	9	7	14	9	28	34	28	34	14	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717022518	15	74699140	TCCCACCTCCCACCTAGGAC	T	406	PASS	SEMA7A	CCDS10262.1	r.?	-	-	Del	downstream	D	74699140	74699161	19	63	756.539	-	-	1	1	1	SEMA7A|CCDS10262.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SEMA7A|CCDS10262.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	16	16	16	0	0	./.	6	8	6	6	30	24	30	26	6	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717025237	15	82153819	GTCTCCTCCTGACTGCCCA	G	290	PASS	-	-	-	-	-	Del	-	D	82153819	82153839	18	35	542.105	-	-	1	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	6	4	7	3	49	24	49	25	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717036064	16	11200149	CAAACTTTTTTGTGGGG	C	522	PASS	CLEC16A	CCDS45409.1	r.?	-	-	Del	intronic	D	11200149	11200166	16	91	971.661	-	-	1	1	1	CLEC16A|CCDS45409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLEC16A|CCDS45409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	6	12	7	13	38	51	38	51	7	13	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717036281	16	11611228	CTAATGTCAGTT	C	481	PASS	ENSG00000228070	ENST00000412978	r.?	-	-	Del	intronic	D	11611228	11611242	11	90	918.115	-	-	1	1	1	ENSG00000228070|ENST00000412978|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000228070|ENST00000412978|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	9	8	14	10	37	26	37	26	14	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717038970	16	17838013	TAAAGGGACAGAGACAC	T	406	PASS	-	-	-	-	-	Del	-	D	17838013	17838034	16	64	755.67	-	-	1	1	-	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	7	7	9	6	48	27	48	28	9	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717043818	16	30084056	TAAA	T	447	PASS	ALDOA	CCDS10668.1	r.?	-	-	Del	downstream	D	30084056	30084063	3	28	478.305	-	-	6	1	1	ALDOA|CCDS10668.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PPP4C|CCDS10669.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	28	25	28	25	0	0	./.	3	6	4	9	30	25	30	25	4	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717053294	16	63237337	ATAA	AAG	720	PASS	-	-	-	-	-	Complex	-	DI	63237338	63237340	3	49	0	-	-	0	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	6	6	0	0	27	27	27	27	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717054466	16	68195966	G	GA	569	PASS	NFATC3	CCDS10862.1	r.?	-	-	Ins	intronic	I	68195966	68195968	1	36	529.443	-	-	1	1	1	NFATC3|CCDS10862.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFATC3|CCDS10862.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	5	5	6	7	11	19	11	19	6	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717055269	16	70967606	TA	T	300	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Del	intronic	D	70967606	70967608	1	12	270.742	-	-	1	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	32	25	32	0	0	./.	3	2	4	5	46	61	46	61	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717060250	16	87924283	GCCATCTCAGCTCACTGCAACCTCCGCCTT	G	435	PASS	CA5A	CCDS10965.1	r.?	-	-	Del	intronic	D	87924283	87924316	29	66	811.624	-	-	1	1	1	CA5A|CCDS10965.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA5A|CCDS10965.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	10	5	12	3	27	13	29	15	14	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717063822	17	8216300	TG	T	598	PASS	ARHGEF15	CCDS11139.1	r.815delG	c.663delG	p.E222fs*114	Del	frameshift	D	8216300	8216303	1	36	596.085	-	-	2	1	1	ARHGEF15|CCDS11139.1|r.815delG|c.663delG|p.E222fs*114|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ARHGEF15|CCDS11139.1|r.815delG|c.663delG|p.E222fs*114|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	11	8	11	0	0	./.	3	8	4	10	18	16	18	16	4	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717070004	17	28113616	TTA	T	658	PASS	SSH2	CCDS11253.1	r.?	-	-	Del	intronic	D	28113616	28113620	2	48	638.836	-	-	1	1	1	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSH2|CCDS11253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	5	7	7	10	34	41	34	41	7	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717073904	17	38746233	CTA	C	900	PASS	-	-	-	-	-	Del	-	D	38746233	38746237	2	66	811.639	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	10	5	11	9	27	35	27	35	11	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717075970	17	43518161	CTA	C	812	PASS	PLEKHM1	CCDS32671.1	r.?	-	-	Del	intronic	D	43518161	43518164	2	77	865.227	-	-	1	1	1	PLEKHM1|CCDS32671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHM1|CCDS32671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	10	6	11	8	18	18	18	18	11	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717078038	17	47815610	CA	C	900	PASS	FAM117A	CCDS11553.1	r.?	-	-	Del	intronic	D	47815610	47815614	1	70	811.037	-	-	3	1	1	FAM117A|CCDS11553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM117A|CCDS11553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	6	9	9	11	24	33	24	33	9	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717078996	17	50398231	CT	C	420	PASS	-	-	-	-	-	Del	-	D	50398231	50398236	1	20	379.327	-	-	4	1	1	-	-	./.	0	0	0	0	28	16	28	16	0	0	./.	4	3	12	6	37	15	37	15	12	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717079005	17	50421272	ATCGCCACACTGTCT	A	392	PASS	-	-	-	-	-	Del	-	D	50421272	50421289	14	60	758.052	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	9	5	9	5	22	25	22	25	9	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717081836	17	58558841	AACTATTCAGATAT	A	493	PASS	APPBP2	CCDS32699.1	r.?	-	-	Del	intronic	D	58558841	58558856	13	84	921.223	-	-	1	1	1	APPBP2|CCDS32699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APPBP2|CCDS32699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	25	21	25	0	0	./.	11	6	11	6	33	22	33	22	11	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717083923	17	64248376	CAA	C	269	PASS	-	-	-	-	-	Del	-	D	64248376	64248380	2	10	261.917	-	-	3	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	4	1	6	1	27	26	27	26	6	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717086030	17	69854362	GA	G	300	PASS	-	-	-	-	-	Del	-	D	69854362	69854371	1	10	269.744	-	-	8	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	1	5	3	24	27	24	27	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717087817	17	74438345	TATTAGG	T	580	PASS	UBE2O	CCDS32742.1	r.?	-	-	Del	intronic	D	74438345	74438354	6	112	1082.59	-	-	1	1	1	UBE2O|CCDS32742.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2O|CCDS32742.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	7	13	8	15	24	35	24	35	8	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717094604	18	10250823	ACATCAG	A	261	PASS	-	-	-	-	-	Del	-	D	10250823	10250831	6	24	472.677	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	7	2	11	12	46	37	46	37	11	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717096175	18	14235869	AC	A	662	PASS	-	-	-	-	-	Del	-	D	14235869	14235872	1	48	650.305	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	5	7	9	9	27	27	27	27	9	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717096324	18	14611051	ACC	A	691	PASS	-	-	-	-	-	Del	-	D	14611051	14611055	2	120	1083.84	-	-	3	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	11	9	13	12	34	39	34	39	13	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717096823	18	15289935	G	GT	275	PASS	-	-	-	-	-	Ins	-	I	15289935	15289943	1	18	482.31	-	-	7	1	1	-	-	./.	0	0	0	0	18	19	20	19	0	0	./.	1	8	3	13	34	37	34	38	3	13	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717101369	18	31837551	CCTT	C	360	PASS	-	-	-	-	-	Del	-	D	31837551	31837558	3	15	325.153	-	-	2	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	2	4	3	4	36	26	36	26	3	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717102501	18	36016208	AACAATACGCTTATTC	A	377	PASS	-	-	-	-	-	Del	-	D	36016208	36016227	15	54	703.895	-	-	1	1	1	-	-	./.	0	0	0	0	20	28	20	28	0	0	./.	5	8	5	8	22	35	22	35	5	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717102539	18	36137965	A	AC	780	PASS	-	-	-	-	-	Ins	-	I	36137965	36137971	1	50	695.466	-	-	5	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	9	4	12	8	31	28	31	30	12	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717103166	18	38175231	AAGTCCTTATACATTTTATATCTCCAGTATTGGAAATGATGTGAAGGTAAAATACATAACATAGCCAACTGTAAAAAATAACACTGACAATTTAAAAT	A	377	PASS	-	-	-	-	-	Del	-	D	38175231	38175332	97	54	704.497	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	5	8	0	0	21	22	26	30	5	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717103811	18	40032783	GC	G	720	PASS	-	-	-	-	-	Del	-	D	40032783	40032785	1	48	650.305	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	7	8	9	32	28	32	28	8	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717105033	18	44404582	GTGAGATATTTTT	G	261	PASS	PIAS2	CCDS32824.1	r.?	-	-	Del	intronic	D	44404582	44404597	12	24	487.729	-	-	1	1	1	PIAS2|CCDS32824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIAS2|CCDS32824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	26	15	26	0	0	./.	2	7	5	8	17	32	17	32	5	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717105510	18	45972147	TAGTA	T	329	PASS	-	-	-	-	-	Del	-	D	45972147	45972157	4	16	322.744	-	-	2	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	3	3	4	5	27	37	27	37	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717105885	18	47165399	GC	G	509	PASS	-	-	-	-	-	Del	-	D	47165399	47165406	1	30	482.912	-	-	6	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	4	5	10	6	33	13	33	13	10	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717107225	18	51246160	CA	C	420	PASS	-	-	-	-	-	Del	-	D	51246160	51246167	1	20	379.345	-	-	6	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	3	4	3	5	20	31	20	31	3	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717107606	18	52598290	C	CA	349	PASS	CCDC68	CCDS11959.1	r.?	-	-	Ins	intronic	I	52598290	52598299	1	12	321.54	-	-	8	1	1	CCDC68|CCDS11959.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC68|CCDS11959.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	5	1	6	3	27	7	27	7	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717107925	18	53723733	CA	C	540	PASS	ENSG00000206129	ENST00000382897	r.?	-	-	Del	intronic	D	53723733	53723741	1	28	487.729	-	-	7	1	1	ENSG00000206129|ENST00000382897|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000206129|ENST00000382897|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	6	3	7	5	23	23	23	23	7	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717108186	18	54535506	T	TA	420	PASS	WDR7	CCDS11962.1	r.?	-	-	Ins	intronic	I	54535506	54535514	1	20	375.13	-	-	7	1	1	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR7|CCDS11962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	20	24	20	0	0	./.	4	3	7	5	27	29	27	29	7	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717112246	18	65608710	TTCAAAAACTA	T	348	PASS	-	-	-	-	-	Del	-	D	65608710	65608724	10	48	649.703	-	-	1	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	7	5	7	6	28	24	28	24	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717113251	18	68086299	AGGGTTTGTGCTTTATAATCT	A	290	PASS	AC013558.1	ENST00000511515	r.?	-	-	Del	intronic	D	68086299	68086321	20	35	540.115	-	-	1	1	1	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	14	26	14	0	0	./.	6	4	5	3	23	19	25	20	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717114405	18	71264576	AAATT	A	358	PASS	-	-	-	-	-	Del	-	D	71264576	71264581	4	20	379.345	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	3	6	3	30	24	30	24	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717116169	18	76313382	G	GA	297	PASS	-	-	-	-	-	Ins	-	I	76313382	76313391	1	12	267.348	-	-	8	1	1	-	-	./.	0	0	0	0	19	10	20	10	0	0	./.	2	3	7	9	33	34	33	34	7	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717118965	19	6296722	TTTTC	T	478	PASS	-	-	-	-	-	Del	-	D	6296722	6296731	4	24	488.255	-	-	2	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	2	10	3	29	21	29	21	10	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717124954	19	21142803	TA	T	300	PASS	-	-	-	-	-	Del	-	D	21142803	21142810	1	10	269.446	-	-	6	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	1	4	2	8	7	27	7	27	2	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717125135	19	21475506	TATA	T	389	PASS	ZNF708	CCDS32980.1	r.2457_2459delUAU	c.?	p.?	Del	3'UTR variant	D	21475506	21475513	3	20	379.151	-	-	2	1	1	ZNF708|CCDS32980.1|r.2457_2459delUAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ZNF708|CCDS32980.1|r.2457_2459delUAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	15	17	15	0	0	./.	3	4	4	4	24	31	24	31	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717126062	19	23563292	GC	G	518	PASS	ZNF91	CCDS42541.1	r.?	-	-	Del	intronic	D	23563292	23563296	1	15	759.507	-	-	3	1	1	ZNF91|CCDS42541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF91|CCDS42541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	20	0	0	./.	0	14	0	1	25	22	25	38	0	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717126830	19	27744848	TA	T	960	PASS	-	-	-	-	-	Del	-	D	27744848	27744854	1	80	865.6	-	-	5	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	9	7	11	10	26	19	26	19	11	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717128110	19	31482348	AT	A	480	PASS	-	-	-	-	-	Del	-	D	31482348	31482352	1	21	433.402	-	-	3	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	2	6	2	7	31	42	31	42	2	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717128175	19	31740299	TGCAGTCCTTG	T	290	PASS	-	-	-	-	-	Del	-	D	31740299	31740313	10	32	533.474	-	-	1	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	7	3	8	3	36	14	36	14	8	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717130490	19	37202977	CCTGCT	C	447	PASS	ZNF567	CCDS12495.1	r.?	-	-	Del	intronic	D	37202977	37202986	5	28	484.642	-	-	1	1	1	ZNF567|CCDS12495.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF567|CCDS12495.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	6	3	6	3	35	31	35	31	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717135544	19	49293216	GT	G	358	PASS	-	-	-	-	-	Del	-	D	49293216	49293218	1	8	347.844	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	7	0	7	0	22	20	22	20	7	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717137673	19	54228654	AG	A	900	PASS	MIR520G	ENST00000385064	r.?	-	-	Del	downstream	D	54228654	54228656	1	70	813.758	-	-	1	1	1	MIR520G|ENST00000385064|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	MIR518E|ENST00000385252|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	25	15	25	15	0	0	./.	9	6	14	6	30	28	30	28	14	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717139993	2	476788	AAGGAAAAATTAAAACTTTCTACTTGCAGATGGCATGACTGTCTATGTGTGAAATCCCT	A	261	PASS	-	-	-	-	-	Del	-	D	476788	476848	58	28	483.236	-	-	1	1	1	-	-	./.	0	0	0	0	29	22	29	22	0	0	./.	6	3	0	0	36	40	42	43	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717140865	2	3022847	TA	T	360	PASS	-	-	-	-	-	Del	-	D	3022847	3022851	1	12	322.559	-	-	3	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	5	1	5	3	34	35	34	35	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717141107	2	3795084	CCGTTAGTGGCAGCTGCTTGCCCCAGTGGA	C	609	PASS	ENSG00000214866	ENST00000423741	r.?	-	-	Del	intronic	D	3795084	3795117	29	130	1128.35	-	-	1	1	1	ENSG00000214866|ENST00000423741|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000214866|ENST00000423741|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	12	9	11	6	30	23	30	26	12	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717144825	2	14133486	TCCTTCTCTTCCTGGAAGAGATATGG	TTGAAA	261	PASS	-	-	-	-	-	Complex	-	DI	14133487	14133511	25	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	28	23	28	23	0	0	./.	5	4	0	0	43	31	46	32	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717145634	2	16570453	ATCTG	A	420	PASS	-	-	-	-	-	Del	-	D	16570453	16570461	4	20	376.318	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	3	5	7	26	51	26	51	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717150277	2	30035778	TAC	T	1049	PASS	ALK	CCDS33172.1	r.?	-	-	Del	intronic	D	30035778	30035784	2	96	965.267	-	-	2	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	12	23	12	0	0	./.	11	7	16	7	40	34	40	34	16	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717154906	2	42243990	GCTGGGCACGGTGGCTCATGC	G	406	PASS	-	-	-	-	-	Del	-	D	42243990	42244014	20	63	750.83	-	-	1	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	8	6	8	4	31	23	31	25	8	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717154955	2	42354369	G	GT	358	PASS	-	-	-	-	-	Ins	-	I	42354369	42354375	1	20	372.104	-	-	5	1	1	-	-	./.	0	0	0	0	27	15	27	15	0	0	./.	3	4	4	4	33	28	34	29	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717158152	2	50901716	TGGAAAATGGTATGT	TTCA	394	PASS	NRXN1	CCDS46282.1	r.?	-	-	Complex	intronic	DI	50901717	50901730	14	60	0	-	-	0	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	9	5	0	0	36	29	37	29	9	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717158594	2	52367950	TTTGTTTTGGCCA	T	290	PASS	-	-	-	-	-	Del	-	D	52367950	52367963	12	36	537.598	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	5	5	5	5	20	23	20	23	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717159037	2	53914005	CT	C	869	PASS	ASB3	CCDS1847.1	r.?	-	-	Del	intronic	D	53914005	53914008	1	72	800.978	-	-	2	1	1	ASB3|CCDS1847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB3|CCDS1847.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	7	8	9	9	29	31	29	31	9	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717159326	2	54436299	AT	A	300	PASS	ACYP2	CCDS1850.1	r.?	-	-	Del	intronic	D	54436299	54436305	1	12	268.799	-	-	5	1	1	ACYP2|CCDS1850.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACYP2|CCDS1850.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	3	2	3	3	22	35	22	35	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717162061	2	62372422	GCCCCCAACT	G	319	PASS	AC107081.2	ENST00000506268	r.?	-	-	Del	intronic	D	62372422	62372435	9	42	591.357	-	-	1	1	1	AC107081.2|ENST00000506268|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC107081.2|ENST00000506268|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	5	6	6	6	35	38	35	38	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717166242	2	75462163	TGGTCTAATA	T	435	PASS	-	-	-	-	-	Del	-	D	75462163	75462174	9	72	805.192	-	-	1	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	7	8	8	8	35	33	35	33	8	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717166346	2	75762917	AGAGG	A	300	PASS	FAM176A	CCDS1959.1	r.?	-	-	Del	intronic	D	75762917	75762925	4	12	268.799	-	-	1	1	1	FAM176A|CCDS1959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM176A|CCDS1959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	3	3	36	25	36	25	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717166893	2	77329761	CAAGAAACTCTTCTGT	C	319	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Del	intronic	D	77329761	77329781	15	42	590.755	-	-	1	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	13	23	13	0	0	./.	6	5	6	5	32	30	32	30	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717167065	2	77839185	A	AG	720	PASS	-	-	-	-	-	Ins	-	I	77839185	77839191	1	48	628.861	-	-	5	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	5	7	8	12	21	42	21	43	8	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717167225	2	78461552	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	78461552	78461559	1	16	425.262	-	-	6	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	1	7	4	7	37	38	38	39	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717167239	2	78531845	GTAGGCACATGGATGCCTCATAGGCAGTGAGACTGCTTCA	G	551	PASS	-	-	-	-	-	Del	-	D	78531845	78531888	39	108	1019.03	-	-	1	1	1	-	-	./.	0	0	0	0	24	18	24	18	0	0	./.	8	11	6	5	18	25	20	31	8	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717167926	2	80519899	ATGT	A	420	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80519899	80519906	3	20	376.318	-	-	2	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	26	14	26	0	0	./.	3	4	5	4	28	39	28	39	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717173428	2	99185276	CAG	C	300	PASS	INPP4A	CCDS46369.1	r.?	-	-	Del	intronic	D	99185276	99185292	2	10	268.799	-	-	7	1	1	INPP4A|CCDS46369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INPP4A|CCDS46369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	1	4	2	4	28	37	28	37	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717174270	2	101651770	CTTTGCTCCAAGGAGCAAGT	C	261	PASS	TBC1D8	CCDS46375.1	r.?	-	-	Del	intronic	D	101651770	101651790	19	30	483.838	-	-	1	1	1	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D8|CCDS46375.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	4	5	4	3	30	32	30	34	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717175377	2	105594154	AT	A	360	PASS	-	-	-	-	-	Del	-	D	105594154	105594160	1	16	322.559	-	-	5	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	3	3	3	3	32	24	32	24	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717175842	2	106747319	T	TA	261	PASS	UXS1	CCDS46378.1	r.?	-	-	Ins	intronic	I	106747319	106747320	1	12	265.788	-	-	0	1	1	UXS1|CCDS46378.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UXS1|CCDS46378.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	14	19	0	0	./.	2	3	3	8	17	25	17	25	3	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717176072	2	107520289	TCTATTGAGTCTTCTAATCCATAA	TTCTTGACTCTATTGTC	319	PASS	-	-	-	-	-	Complex	-	DI	107520290	107520312	23	42	0	-	-	0	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	6	5	0	0	14	25	16	25	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717176209	2	108198017	TGCACCCTGCA	T	261	PASS	-	-	-	-	-	Del	-	D	108198017	108198031	10	30	483.838	-	-	1	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	5	4	5	4	28	31	28	31	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717176267	2	108372367	GAATATCTTTTGGGAGGGGGGCATTTTTT	G	435	PASS	-	-	-	-	-	Del	-	D	108372367	108372398	28	66	805.192	-	-	1	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	10	5	9	2	21	15	22	18	10	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717176500	2	109259898	CCATG	C	360	PASS	LIMS1	CCDS2078.1	r.?	-	-	Del	intronic	D	109259898	109259905	4	16	315.936	-	-	1	1	1	LIMS1|CCDS2078.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LIMS1|CCDS2078.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	3	3	4	3	24	18	24	18	4	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717176630	2	109592760	G	GT	900	PASS	EDAR	CCDS2081.1	r.?	-	-	Ins	intronic	I	109592760	109592766	1	72	795.559	-	-	5	1	1	EDAR|CCDS2081.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	EDAR|CCDS2081.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	24	20	24	0	0	./.	8	7	10	9	31	27	31	27	10	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717178642	2	116927172	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	116927172	116927181	1	18	478.419	-	-	8	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	1	8	7	9	34	31	35	31	7	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717178648	2	116940207	TTTTAACTTCGTGTGATCCCG	T	377	PASS	-	-	-	-	-	Del	-	D	116940207	116940231	20	56	697.071	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	6	7	7	6	19	26	19	27	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717181398	2	126628636	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	126628636	126628641	1	15	318.344	-	-	4	1	1	-	-	./.	0	0	0	0	23	24	23	24	0	0	./.	4	2	5	5	36	28	36	28	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717185137	2	137580979	G	GT	540	PASS	THSD7B	ENST00000409968	r.?	-	-	Ins	intronic	I	137580979	137580985	1	28	478.419	-	-	5	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	6	3	6	3	31	30	31	30	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717187930	2	146690559	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	146690559	146690577	2	12	268.799	-	-	8	1	-	-	-	./.	0	0	0	0	25	22	25	22	0	0	./.	2	3	2	4	31	32	31	32	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717188350	2	148352263	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	148352263	148352274	2	10	268.799	-	-	5	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	1	4	2	4	23	24	23	24	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717197557	2	177960100	GGGAGGGGAGCCAGT	G	377	PASS	-	-	-	-	-	Del	-	D	177960100	177960116	14	44	695.265	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	10	3	11	3	31	26	31	26	11	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717197789	2	178580141	ATCTGGAGAATCAATTTCT	A	348	PASS	PDE11A	CCDS42786.1	r.?	-	-	Del	intronic	D	178580141	178580162	18	49	645.117	-	-	1	1	1	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	6	6	7	7	19	27	19	28	7	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717198810	2	182184746	AT	A	420	PASS	-	-	-	-	-	Del	-	D	182184746	182184748	1	14	375.114	-	-	1	1	1	-	-	./.	0	0	0	0	27	16	27	16	0	0	./.	1	6	2	7	28	41	28	41	2	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717199593	2	184691187	AGCTCTGCT	AAGCAGAG	580	PASS	-	-	-	-	-	Complex	-	DI	184691188	184691195	8	120	0	-	-	0	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	11	9	0	0	40	29	40	29	11	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717199867	2	185493716	CTTTTTTCAT	C	290	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Del	intronic	D	185493716	185493727	9	32	537.598	-	-	1	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	7	3	8	5	28	31	28	31	8	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717202371	2	194010614	TTAAA	T	329	PASS	-	-	-	-	-	Del	-	D	194010614	194010626	4	16	322.559	-	-	2	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	3	3	4	3	27	31	27	31	4	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717202372	2	194012043	GA	G	540	PASS	-	-	-	-	-	Del	-	D	194012043	194012047	1	28	480.828	-	-	3	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	6	3	9	6	31	24	31	24	9	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717203335	2	197261179	ATTCCC	A	623	PASS	HECW2	CCDS33354.1	r.?	-	-	Del	intronic	D	197261179	197261186	5	64	752.637	-	-	1	1	1	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	7	7	7	8	20	24	20	24	7	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717207474	2	210315264	AT	A	420	PASS	MAP2	CCDS33369.1	r.?	-	-	Del	intronic	D	210315264	210315270	1	18	376.318	-	-	5	1	1	MAP2|CCDS33369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP2|CCDS33369.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	5	2	5	28	20	28	20	2	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717208813	2	214699479	ATCATTTTCTGAG	A	261	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	214699479	214699494	12	24	483.838	-	-	1	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	25	16	25	0	0	./.	2	7	2	7	16	22	16	22	2	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717208992	2	215158500	GTGGCAGCTCTGGTAGCAGTGGCCCCAGGGCAGAA	G	261	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	215158500	215158537	34	28	483.838	-	-	1	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	6	3	1	3	28	18	33	18	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717210037	2	218102917	TAATATTTCTAGTGTTTTTACACTGTAATCAGAGAGTGTTCTTTATA	T	406	PASS	-	-	-	-	-	Del	-	D	218102917	218102965	46	55	752.035	-	-	1	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	10	1	3	13	16	16	23	4	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717211340	2	222134659	AAATTTAAAATAAATTTTATACCAAAGCAAGCATAAT	A	278	PASS	-	-	-	-	-	Del	-	D	222134659	222134697	36	32	535.791	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	3	7	1	4	18	28	20	31	3	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717220452	20	6310925	AT	A	900	PASS	-	-	-	-	-	Del	-	D	6310925	6310935	1	70	811.705	-	-	9	1	1	-	-	./.	0	0	0	0	20	35	20	35	0	0	./.	6	9	8	14	38	34	38	34	8	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717220678	20	7034374	ATCCATGATA	AATC	406	PASS	-	-	-	-	-	Complex	-	DI	7034375	7034383	9	63	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	8	6	0	0	30	25	30	25	8	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717221367	20	9458000	GAATTGCCTCAGACAAATGAGAATGAATGGTCACCCAACTCATATAAGAACTTAGCTGTTGGAATAGTCTTGTAATGTCCTATGATTCTTCCTTCTACACCGTGGTCAATACTTTCTTCAGAAGCTAAAGGGGGACAAGCACAGAGAATCATTTGCTACTATTTACCGAACTTGGAAGTATTTAATTTCCA	GATAATATGCTGGATAAT	522	PASS	PLCB4	CCDS13104.1	r.?	-	-	Complex	intronic	DI	9458001	9458190	190	99	0	-	-	0	1	1	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	8	10	0	0	21	32	29	42	8	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717221861	20	11054794	TTTTGCCCTTTC	T	290	PASS	-	-	-	-	-	Del	-	D	11054794	11054809	11	35	541.337	-	-	1	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	4	6	4	6	38	40	38	40	4	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717223129	20	14652077	A	AT	420	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	14652077	14652086	1	20	375.986	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	19	27	19	0	0	./.	4	3	6	6	31	41	31	41	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717224557	20	18731502	TTGACTTAGCTGCTGTAATTAGGGTGTGAGAGGAGTGTGCTCC	T	406	PASS	DTD1	CCDS13138.1	r.?	-	-	Del	intronic	D	18731502	18731550	42	60	759.799	-	-	1	1	1	DTD1|CCDS13138.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	DTD1|CCDS13138.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	9	1	6	29	28	33	31	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717226159	20	24983370	CCGAG	C	481	PASS	ACSS1	CCDS13167.1	r.?	-	-	Del	downstream	D	24983370	24983375	4	42	596.856	-	-	1	1	1	ACSS1|CCDS13167.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ACSS1|CCDS13167.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	13	11	13	0	0	./.	5	6	5	7	26	27	26	27	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717232576	20	42426021	AACT	AGG	1136	PASS	-	-	-	-	-	Complex	-	DI	42426022	42426024	3	120	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	7	14	0	0	31	42	31	42	7	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717234365	20	47471571	ATAACATACTTAAAG	A	435	PASS	-	-	-	-	-	Del	-	D	47471571	47471587	14	70	784.01	-	-	1	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	6	9	7	10	30	35	30	35	7	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717237787	20	55882734	TTTCCTCATCTGCTAA	T	377	PASS	-	-	-	-	-	Del	-	D	55882734	55882752	15	50	705.484	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	9	4	9	23	27	23	27	4	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717247581	21	24493460	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	24493460	24493461	1	7	314.446	-	-	0	1	-	-	-	./.	0	0	0	0	15	1	15	1	0	0	./.	6	0	11	0	24	0	24	0	11	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717247582	21	24493847	CCCAAGGTAATCACATATGTAATTTACTGTTACTTAACAAGGAGTGCATTTATTTTTTAATGTTCACGTACGTGTCTGAGCATCACTTTCTAGAAATTCTGTTTAGTAGCACAGTGTGTAATTTTAAATATAAGCTTGTTATTATTTTTAGTTGGGAGAGATTAGGAGACAAATTTCCTCTAAGATTCCTTTAAAACAG	C	493	PASS	-	-	-	-	-	Del	-	D	24493847	24494051	198	90	923.341	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	9	8	0	0	21	25	30	33	9	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717248498	21	26642897	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	26642897	26642899	1	20	375.383	-	-	1	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	3	4	5	7	39	45	39	45	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717249283	21	28389913	AC	A	900	PASS	-	-	-	-	-	Del	-	D	28389913	28389916	1	72	813.508	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	8	7	12	9	32	34	32	34	12	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717250188	21	30454252	CGAGCCTGCTTACGTACAATATTGAACCCAGTCCTGATTCTTATGTAGAATTTGCATCTTAACACCAGTGCAAAGACCTGGGTTTGATAAGTTAAATGGTTATTTCAAAAT	C	464	PASS	C21orf7	CCDS13584.1	r.?	-	-	Del	intronic	D	30454252	30454365	110	77	869.026	-	-	1	1	1	C21orf7|CCDS13584.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C21orf7|CCDS13584.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	6	10	0	0	25	21	31	31	6	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717252724	21	36796396	TC	T	1020	PASS	-	-	-	-	-	Del	-	D	36796396	36796399	1	88	919.728	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	10	7	11	9	41	31	41	31	11	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717254120	21	39917721	AG	A	420	PASS	ERG	CCDS13657.1	r.?	-	-	Del	intronic	D	39917721	39917723	1	20	380.199	-	-	1	1	1	ERG|CCDS13657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERG|CCDS13657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	3	4	5	4	35	33	35	33	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717255001	21	42029675	TATTTGTTTTGTGTATATACAAGAGA	T	261	PASS	DSCAM	CCDS42929.1	r.?	-	-	Del	intronic	D	42029675	42029705	25	28	485.215	-	-	1	1	1	DSCAM|CCDS42929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSCAM|CCDS42929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	6	3	4	26	27	26	29	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717255855	21	44232730	G	GT	900	PASS	-	-	-	-	-	Ins	-	I	44232730	44232739	1	72	805.681	-	-	8	1	1	-	-	./.	0	0	0	0	23	11	23	11	0	0	./.	8	7	11	11	32	42	32	42	11	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717257625	22	16999329	TG	T	811	PASS	-	-	-	-	-	Del	-	D	16999329	16999334	1	72	816.373	-	-	4	1	1	-	-	./.	0	0	0	0	34	20	34	20	0	0	./.	7	8	8	11	54	44	54	44	8	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717262200	22	30048163	A	AC	420	PASS	NF2	CCDS13861.1	r.?	-	-	Ins	intronic	I	30048163	30048171	1	20	378.164	-	-	7	1	1	NF2|CCDS13861.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NF2|CCDS13861.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	22	10	25	0	0	./.	3	4	7	7	17	20	17	21	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717269253	3	2180535	TTC	T	420	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2180535	2180553	2	20	376.898	-	-	8	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	4	3	6	44	51	44	51	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717275472	3	17823943	TGATTAAAAAAAGTTTACA	T	522	PASS	-	-	-	-	-	Del	-	D	17823943	17823964	18	91	966.155	-	-	1	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	12	6	11	5	41	36	42	37	12	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717275664	3	18505979	GTTTTTCAT	G	406	PASS	-	-	-	-	-	Del	-	D	18505979	18505992	8	60	753.795	-	-	1	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	9	5	11	6	50	29	50	29	11	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717278261	3	25778358	ACAAGACCTAGTGTTTGATAGATCAATAGGGTGTTTACAGTTTACAATAATC	A	348	PASS	NGLY1	CCDS46778.1	r.?	-	-	Del	intronic	D	25778358	25778412	51	45	646.11	-	-	1	1	1	NGLY1|CCDS46778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NGLY1|CCDS46778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	8	4	0	1	28	28	36	31	8	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717278281	3	25815538	AC	A	960	PASS	NGLY1	CCDS46778.1	r.?	-	-	Del	intronic	D	25815538	25815541	1	65	860.276	-	-	2	1	1	NGLY1|CCDS46778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NGLY1|CCDS46778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	12	4	18	5	41	23	41	23	18	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717279246	3	28862206	TTTCAGCTGGACATAGCTGTTTTGGGGGACCGCTA	T	290	PASS	-	-	-	-	-	Del	-	D	28862206	28862244	34	35	538.425	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	6	4	1	2	23	33	28	35	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717279411	3	29327551	TC	T	840	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29327551	29327554	1	64	753.193	-	-	2	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	7	7	10	16	30	40	30	40	10	16	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717279520	3	29660121	AGTTCTT	A	348	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29660121	29660132	6	48	640.089	-	-	1	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	5	7	5	7	26	31	26	31	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717281624	3	35291522	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	35291522	35291530	1	25	425.924	-	-	7	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	4	4	7	6	31	30	32	30	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717282120	3	36959281	AATGTTTACTCTTTTC	A	377	PASS	-	-	-	-	-	Del	-	D	36959281	36959300	15	56	699.351	-	-	1	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	7	6	7	6	37	45	37	45	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717283004	3	39553231	TC	T	300	PASS	MOBP	CCDS2687.1	r.?	-	-	Del	intronic	D	39553231	39553238	1	12	269.213	-	-	6	1	1	MOBP|CCDS2687.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MOBP|CCDS2687.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	3	4	31	26	31	26	3	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717283241	3	40251760	CAATCAGGAA	C	348	PASS	MYRIP	CCDS2689.1	r.?	-	-	Del	intronic	D	40251760	40251772	9	40	646.11	-	-	1	1	1	MYRIP|CCDS2689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYRIP|CCDS2689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	9	3	9	3	43	34	43	34	9	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717285577	3	47035222	GAGCTGCTCAGAGAGGGCCCTAGGTCA	G	348	PASS	NBEAL2	CCDS46817.1	r.?	-	-	Del	intronic	D	47035222	47035249	26	40	646.11	-	-	1	1	1	NBEAL2|CCDS46817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEAL2|CCDS46817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	9	3	8	3	32	31	34	31	10	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717287133	3	50984541	G	GT	360	PASS	DOCK3	CCDS46835.1	r.?	-	-	Ins	intronic	I	50984541	50984551	1	7	310.412	-	-	9	1	1	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	23	18	23	0	0	./.	0	6	1	9	22	41	22	41	1	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717288261	3	54519923	A	AC	1320	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Ins	intronic	I	54519923	54519930	1	140	1169.48	-	-	6	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	13	9	14	13	32	37	33	37	14	13	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717288858	3	56419437	GGTGGTGAGTGGATGGAAAATACAGCCAAA	G	319	PASS	ERC2	CCDS46851.1	r.?	-	-	Del	intronic	D	56419437	56419469	29	36	592.268	-	-	1	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	8	3	6	40	41	40	43	3	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717288872	3	56460027	ACACAGCTC	A	406	PASS	ERC2	CCDS46851.1	r.?	-	-	Del	intronic	D	56460027	56460039	8	55	753.193	-	-	1	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	4	10	4	11	19	45	19	45	4	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717289927	3	59457939	AG	A	840	PASS	-	-	-	-	-	Del	-	D	59457939	59457941	1	63	753.795	-	-	1	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	8	6	12	6	26	24	26	24	12	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717290099	3	60013410	T	TC	720	PASS	FHIT	CCDS2894.1	r.?	-	-	Ins	intronic	I	60013410	60013412	1	48	638.885	-	-	1	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	5	7	8	11	23	40	23	40	8	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717291438	3	63800553	TA	T	480	PASS	C3orf49	ENST00000295896	r.?	-	-	Del	upstream	D	63800553	63800562	1	25	430.74	-	-	8	1	1	C3orf49|ENST00000295896|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C3orf49|ENST00000295896|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	21	8	21	8	0	0	./.	4	4	8	6	33	36	33	36	8	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717294507	3	73194041	GGACGTATGGCCACCTA	G	261	PASS	AC103560.1	ENST00000509224	r.?	-	-	Del	intronic	D	73194041	73194060	16	28	484.583	-	-	1	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	6	3	6	3	26	23	26	23	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717296722	3	76109459	G	GA	900	PASS	ROBO2	ENST00000487694	r.?	-	-	Ins	intronic	I	76109459	76109467	1	42	798.005	-	-	7	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	20	25	20	0	0	./.	13	2	14	2	35	29	35	29	14	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717298536	3	81730793	CTGGTTTTCAACAAGGATGGTTCAA	C	638	PASS	GBE1	ENST00000429644	r.?	-	-	Del	intronic	D	81730793	81730829	24	128	1182.73	-	-	1	1	1	GBE1|ENST00000429644|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GBE1|ENST00000429644|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	15	7	12	6	57	30	60	31	15	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717301096	3	89975049	GTTGCAAAGAGAGC	G	319	PASS	-	-	-	-	-	Del	-	D	89975049	89975065	13	42	591.666	-	-	1	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	6	5	6	4	32	25	32	26	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717304528	3	103973255	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	103973255	103973262	1	24	425.322	-	-	6	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	5	3	7	3	36	31	36	32	7	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717305420	3	106461367	GC	G	300	PASS	-	-	-	-	-	Del	-	D	106461367	106461369	1	12	269.213	-	-	1	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	3	2	4	2	26	27	26	27	4	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717305931	3	107996359	AGAGAGAAT	A	261	PASS	-	-	-	-	-	Del	-	D	107996359	107996372	8	30	483.378	-	-	1	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	5	5	5	37	40	37	40	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717306852	3	110215335	GA	G	720	PASS	-	-	-	-	-	Del	-	D	110215335	110215340	1	45	644.906	-	-	4	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	8	4	15	8	39	25	39	25	15	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717309322	3	117833346	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	117833346	117833352	1	24	425.924	-	-	5	1	1	-	-	./.	0	0	0	0	19	16	19	17	0	0	./.	3	5	7	10	23	29	23	30	7	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717309595	3	118744520	A	ATGG	318	PASS	IGSF11	CCDS2983.1	r.?	-	-	Ins	intronic	I	118744520	118744524	3	15	312.218	-	-	1	1	1	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	13	20	15	0	0	./.	4	2	4	2	39	35	39	36	4	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717312538	3	127100647	AGGCTAAAAAGGAG	A	290	PASS	-	-	-	-	-	Del	-	D	127100647	127100665	13	32	537.823	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	7	3	7	3	34	19	34	19	7	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717312561	3	127208340	AAGGGGCAGCAAG	A	406	PASS	ENSG00000230883	ENST00000455379	r.?	-	-	Del	intronic	D	127208340	127208356	12	60	748.979	-	-	1	1	1	ENSG00000230883|ENST00000455379|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000230883|ENST00000455379|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	15	25	15	0	0	./.	5	9	5	9	20	29	20	29	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717314755	3	135043603	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	135043603	135043604	1	20	368.469	-	-	0	1	-	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	3	4	5	6	26	28	26	29	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717316453	3	140779635	A	AT	480	PASS	SPSB4	CCDS3115.1	r.?	-	-	Ins	intronic	I	140779635	140779643	1	24	425.924	-	-	7	1	1	SPSB4|CCDS3115.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SPSB4|CCDS3115.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	24	24	24	0	0	./.	3	5	7	5	36	37	36	38	7	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717320602	3	153454980	GCAT	G	420	PASS	-	-	-	-	-	Del	-	D	153454980	153454986	3	18	376.898	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	2	5	3	7	18	24	18	24	3	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717321265	3	156127244	GC	G	300	PASS	KCNAB1	CCDS33882.1	r.?	-	-	Del	intronic	D	156127244	156127246	1	12	269.213	-	-	1	1	1	KCNAB1|CCDS33882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNAB1|CCDS33882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	3	2	6	4	30	24	30	24	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717324268	3	166778912	AGAGAG	A	294	PASS	-	-	-	-	-	Del	-	D	166778912	166778918	5	24	430.74	-	-	1	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	3	5	5	8	31	27	31	27	5	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717324749	3	168872015	AAC	A	360	PASS	MECOM	ENST00000494292	r.?	-	-	Del	intronic	D	168872015	168872031	2	16	323.055	-	-	7	1	1	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	3	2	23	31	23	31	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717331650	3	191494855	GTATTTCCCA	G	319	PASS	-	-	-	-	-	Del	-	D	191494855	191494867	9	42	592.268	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	5	6	5	7	36	30	36	30	5	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717335571	4	4436914	CTTAAAGTATGTT	C	377	PASS	STX18	CCDS3377.1	r.?	-	-	Del	intronic	D	4436914	4436930	12	56	699.614	-	-	1	1	1	STX18|CCDS3377.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STX18|CCDS3377.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	7	6	7	7	24	39	24	39	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717337493	4	10539101	C	CA	660	PASS	CLNK	CCDS47024.1	r.?	-	-	Ins	intronic	I	10539101	10539109	1	30	585.358	-	-	7	1	1	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLNK|CCDS47024.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	2	9	2	9	17	27	17	27	2	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717340205	4	19179988	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	19179988	19179995	1	64	744.399	-	-	6	1	1	-	-	./.	0	0	0	0	29	20	30	20	0	0	./.	7	7	10	8	36	26	37	26	10	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717341464	4	23389279	AT	A	600	PASS	-	-	-	-	-	Del	-	D	23389279	23389286	1	27	538.164	-	-	6	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	8	2	11	2	39	22	39	22	11	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717342105	4	25090135	GCCGCGATGGGTCCCAGTCATTAA	G	510	PASS	-	-	-	-	-	Del	-	D	25090135	25090160	23	96	967.492	-	-	1	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	11	7	9	7	21	30	24	30	12	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717342922	4	27406841	AATCAACAGAGTCTCCAT	A	522	PASS	-	-	-	-	-	Del	-	D	27406841	27406863	17	99	968.696	-	-	1	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	8	10	8	9	29	26	29	27	8	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717343954	4	30193311	CTCAAAATATTTTCTTAG	C	377	PASS	ENSG00000237496	ENST00000424014	r.?	-	-	Del	intronic	D	30193311	30193333	17	54	699.614	-	-	1	1	1	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237496|ENST00000424014|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	11	23	11	0	0	./.	5	8	5	9	24	29	24	29	5	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717344924	4	33004053	GCAATCCAAGCCTCTGATAAAATAGACTT	G	348	PASS	-	-	-	-	-	Del	-	D	33004053	33004085	28	49	645.797	-	-	1	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	6	6	6	4	22	31	23	33	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717354095	4	58259823	TC	T	509	PASS	-	-	-	-	-	Del	-	D	58259823	58259828	1	28	483.746	-	-	4	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	3	6	4	7	43	26	43	26	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717354284	4	58752768	GA	G	277	PASS	-	-	-	-	-	Del	-	D	58752768	58752774	1	12	268.48	-	-	5	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	3	2	5	33	44	33	44	2	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717355249	4	61416788	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	61416788	61416795	1	72	798.215	-	-	6	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	8	7	8	11	38	37	38	37	8	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717357862	4	68740383	CAATA	C	480	PASS	TMPRSS11D	CCDS3518.1	r.?	-	-	Del	intronic	D	68740383	68740394	4	21	430.531	-	-	2	1	1	TMPRSS11D|CCDS3518.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMPRSS11D|CCDS3518.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	6	2	8	2	36	14	36	14	8	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717360170	4	75723928	TA	T	780	PASS	BTC	CCDS3566.1	r.?	-	-	Del	upstream	D	75723928	75723930	1	44	696.603	-	-	1	1	1	BTC|CCDS3566.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BTC|CCDS3566.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	23	17	23	17	0	0	./.	10	3	11	8	35	34	35	34	11	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717361753	4	80050471	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	80050471	80050481	1	21	425.113	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	6	6	7	30	31	31	31	6	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717363903	4	87361829	TA	T	449	PASS	MAPK10	CCDS43247.1	r.?	-	-	Del	intronic	D	87361829	87361834	1	25	388.387	-	-	4	1	1	MAPK10|CCDS43247.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAPK10|CCDS43247.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	4	8	4	32	24	32	24	8	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717366087	4	94246166	GT	G	554	PASS	GRID2	CCDS3637.1	r.?	-	-	Del	intronic	D	94246166	94246173	1	143	1182.76	-	-	6	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	19	27	19	0	0	./.	10	12	12	12	42	34	42	37	12	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717366665	4	95963571	C	CA	903	PASS	BMPR1B	ENST00000515059	r.?	-	-	Ins	intronic	I	95963571	95963580	1	72	846.011	-	-	8	1	1	BMPR1B|ENST00000515059|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BMPR1B|ENST00000515059|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	19	17	0	0	./.	5	11	6	11	31	26	35	27	6	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717367425	4	98787995	CAG	C	689	PASS	C4orf37	CCDS3645.1	r.?	-	-	Del	intronic	D	98787995	98787999	2	40	645.797	-	-	1	1	1	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	9	3	13	5	34	26	34	26	13	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717372519	4	115814740	ATG	A	661	PASS	NDST4	CCDS3706.1	r.?	-	-	Del	intronic	D	115814740	115814746	2	33	645.797	-	-	2	1	1	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDST4|CCDS3706.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	26	20	26	0	0	./.	2	10	2	14	24	35	24	35	2	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717372907	4	117537143	GGGGTGCACTGGCGCAATCTCAGATCTTGGCTCACTGCAACCTCCTCTTCCT	G	290	PASS	-	-	-	-	-	Del	-	D	117537143	117537199	51	27	538.164	-	-	1	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	8	2	0	0	20	13	28	15	8	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717376661	4	128170547	CA	C	1078	PASS	-	-	-	-	-	Del	-	D	128170547	128170549	1	108	1022.51	-	-	1	1	1	-	-	./.	0	0	0	0	24	12	24	12	0	0	./.	11	8	17	8	45	36	45	36	17	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717376892	4	128988878	TC	T	315	PASS	LARP1B	CCDS3738.1	r.?	-	-	Del	intronic	D	128988878	128988880	1	7	312.664	-	-	1	1	1	LARP1B|CCDS3738.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LARP1B|CCDS3738.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	6	0	8	0	24	33	24	33	8	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717376950	4	129094263	TTATGA	T	447	PASS	LARP1B	CCDS3738.1	r.?	-	-	Del	intronic	D	129094263	129094270	5	30	484.348	-	-	1	1	1	LARP1B|CCDS3738.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARP1B|CCDS3738.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	16	25	16	0	0	./.	5	4	8	7	20	19	20	19	8	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717377580	4	130977044	TA	T	780	PASS	-	-	-	-	-	Del	-	D	130977044	130977046	1	56	698.409	-	-	1	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	7	6	12	9	26	29	26	29	12	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717378502	4	133469094	AGAACTT	A	290	PASS	-	-	-	-	-	Del	-	D	133469094	133469103	6	32	533.348	-	-	1	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	3	7	4	7	11	21	11	21	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717385509	4	156489586	TA	T	300	PASS	-	-	-	-	-	Del	-	D	156489586	156489591	1	12	269.082	-	-	4	1	1	-	-	./.	0	0	0	0	24	30	24	30	0	0	./.	3	2	4	4	25	29	25	29	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717387086	4	161304324	AT	A	389	PASS	-	-	-	-	-	Del	-	D	161304324	161304329	1	20	376.113	-	-	4	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	3	4	8	33	31	33	31	4	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717389184	4	166959649	A	AT	480	PASS	TLL1	CCDS3811.1	r.?	-	-	Ins	intronic	I	166959649	166959650	1	25	425.715	-	-	0	1	1	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	22	30	22	0	0	./.	4	4	6	8	25	29	25	29	6	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717389594	4	168230615	AAAT	A	358	PASS	-	-	-	-	-	Del	-	D	168230615	168230623	3	20	376.715	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	3	5	4	27	26	27	26	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717390372	4	170406013	A	AG	300	PASS	NEK1	CCDS47162.1	r.?	-	-	Ins	intronic	I	170406013	170406017	1	10	265.47	-	-	3	1	1	NEK1|CCDS47162.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEK1|CCDS47162.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	1	4	1	36	36	37	36	4	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717392060	4	175771589	A	AT	629	PASS	-	-	-	-	-	Ins	-	I	175771589	175771599	1	36	582.348	-	-	9	1	1	-	-	./.	0	0	0	0	25	29	25	30	0	0	./.	3	8	7	7	23	24	23	24	7	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717392375	4	176812940	GGAATAGCAGAATCAGAGACTAGTCTGAAGCTTCAACTCATAATTTCAAAGCTCATTTAGATAATTATAGTACTAAATAAAGAATAAAATGAAAAGGCAAGGCTATGATTCATAATATTGCAAGCTGTGATGCTGCAGGATTGCCAGGAACAGAGATCAACAAGCAGTACAGCAAACTTCAATGTGGCTTTTGCCCGTTGTTATCTTGCATGTTGTATGTGTGTTGACACAGACTCAATAAAAATCAGAGGGCTTGTTTGGGAAGCAGTCTAGTACTTTAAAACTACTATCAAGCATGTAACTTTGCCACCTTTTGGTAACTAAAGCGAACTACAATTTACATTCTCAAGAACAAAATTAACCAAATGGCATCTTGCTCATATGAATCCTACCTAATTGAGAGATAATATCACAGTCATTTATTATTTACATAATTAAAATCCTTAAATAGGGACTCAAGATACCCTCTTATTTCATTCGAACTTACTTCATTAACCTTAAAAAATACATCTAGAAAAACAATCTGCTACTTATTGTTCCCTATCCCTTCCCTACTTTTTCTCACTTCTTGGTCATTATTTGTGCTTTCTTCTCTCTCAAATGTCCAATACTGTCTATCCTTCAACTTGTAATTCATGTGTCAACTATTTCATGAATTCGTAAGCAGCCCCAACTGGAGTAATGGTCACTACTGTGAAATCCTGTTGCACTCTATTTTTACTTCTTATACTTATTGTTCATTCTTTCATTCCTTTATTCAATAAATATTTTCATCCACTTTGTAAGAGAGAGTGAAGGACTAAATTTTCCACTACGGCTCTTTCATTTGCTTGATCCCTACAGCTGTCTCTTCCTCCCATCCCCTCTGGCACATGACCTTCACCCAATTGCCCCTTCTCACCCTGTTGACATAATCCAAATTCCTCAAACAATGGCAGTGAATATACAAGAATCATCTTTGAGCAACTATTCCCAAAACTAGGTGAACTTCAACTACTTCCTCTTGCTAAACTCAATAAAAGCTCCGTCTTCCAGATTTTTACCTATATTGTTCTGACTGATTTTCTTCCAGGGTTTCAATGTCAAGACTCAGATCAGGACTGTGTTTTTGGGTGCTTGGCATTTCATCATGCCAGACACTCTGTTGATGTCTCCTCTCTTTGGAGTCCCAGTGACTAGACAGTTGGGCTGGTCCTGCTCCTGACCACTGTTCTGCTCCCTTTGCTTGAAAGCACTATCTAAGCTTTTATTCTTCCATCTTAATTGTCCTTGGTGTAAGCTTTTTCATTTGCACTGTTTCGCTACTTAATGGGTCTCCCCCATGGATAAGACAGGCATTGGAGACAGTGATGGTAAACCTACGAGCCTGATGCTCAGGTTCTCTTATTTTGAATCAATGTACTTGTGGGCTGCTATCCAGCTTCTTAAACTGTGGCAGGCTTTTATTAAGAACAACTTTGAACTTTATTGATAATACTAGAAAAACTTGGAATATGAAGAAAATAATCCTTTGTGATATGCCGTAGGAAAGGAGAAGTTTCAAAATTTCAACTATTCAATGATCAGCGTTTTTTATTTTTTGAAGTAGCCTCTACAACTTAAGAAATTTCTAAAACTGATTCCCTTAAGAACTCCTTAGAAAAGGTAATAAAAGCATGGAGTACCTAAAATCCTAAGTTAAACACTTCTCCCTTTCTCCTGACCTTACTCTGATCAGCCTCCCTCCTGGCCTCCCTTAAGCTGACTGCCTTTTTCCTCTTGTTCTATTCTTCCTCCTGATCCTCCAGCACCTTCATGGGGTCCTCCTTTCTTTCCTCGGCCAGTTTTTCTTAAACTACCCCCTGAATAGATAATATTCCTTCTTAATGTCTTATAAGACAGGTGGGGATGATAACTAACCTCATTCGTTTTATATCTTCAAATCTTTGTTCAGATCAGATTTGCATAATCTAGTTACGTTTCCTAACCTTCCTAAGTAAAAACAGAAGTTCACTGAAGAATATAAGTTTATTCTAGGAATGTGTAGTCTAAGATAACCTGATATCTATCAACTCATCTCTTTGTAGGACATGAAGGTGCTAAAACTCGGTAAGAAAAAGCGATATAAATTAATTAACAAAATGATATAAAATATAATGATCAACATTTGAGAGAGCTGCACACCTCACATTCTATCTCTGAGATCATTCCTGTTGAAATGGATTGGTCAAAAATCCAATCCTTAAAAAAGACAGAGATTAAAAATAAATTAATCTCTTATTTCAGAGACCCCTTAACTCCTACTTCTGAGAATACTGTTGTCTCAGTGTGGCTGATAATTTCACAAGTGCTTTATCCACCTTCTTTGTTGATCTTAAAACTGAGATGGCAGATATAATTGGAAAACAGAAGATAAGATAGCAGACCGTCCTCATGTTAGAATTACATTTTTTTTTAGTTCTTTGAAGATACTTTTGCTCAGAAAAAAAAGGAAAAGTGATAGACCAAATTAAGTGTTCTCAGCAACTACTAAGTCCAAGTGGGAAATCATCTATATCTAATCTATAGGAAGATACTTCTGTATATAGCGAAAAAGCGAGGAAGGGGTGCTAAAGAACAATTGCTCTGCCTTAGCTCGAAAGACAGAGTCACAAAATATAAAAGACTAACTCTGTCTGATAGAGTGACTCCCCTCTGAGGAAATAGCTGCTCCATTCTGCCCACAATTGCTTTTCATGAAAAGAAAGAGATTTTTATGCATGCAAAAA	G	435	PASS	GPM6A	CCDS3824.1	r.?	-	-	Del	intronic	D	176812940	176815689	2746	72	806.644	-	-	1	1	1	GPM6A|CCDS3824.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GPM6A|CCDS3824.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	22	27	22	0	0	./.	7	8	0	0	34	26	41	34	7	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717393539	4	179901647	ATAAAATTTTTTG	A	406	PASS	-	-	-	-	-	Del	-	D	179901647	179901661	12	60	752.226	-	-	1	1	1	-	-	./.	0	0	0	0	17	4	17	4	0	0	./.	9	5	10	5	23	21	23	21	10	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717395567	4	185082463	CG	C	720	PASS	ENPP6	CCDS3834.1	r.?	-	-	Del	intronic	D	185082463	185082468	1	49	645.797	-	-	4	1	1	ENPP6|CCDS3834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENPP6|CCDS3834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	26	24	26	0	0	./.	6	6	10	7	34	31	34	31	10	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717396734	4	188008086	CGGTGAGAGTCCGA	C	261	PASS	-	-	-	-	-	Del	-	D	188008086	188008102	13	30	484.348	-	-	1	1	1	-	-	./.	0	0	0	0	13	26	13	26	0	0	./.	4	5	4	4	27	18	27	19	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717399402	5	637491	GTGCGTGTACATATGTAAGTGTGCGTGTGTGTCCATGTGTGTATATACATGGGCACACACATGCCTTTTAAAAGTTACAGTGCTGAACACTGCACCCAGAGAATTTGGCCTGACGTGCGCCCCATCCTCTCTATATCTCAGACTCCATGGATACCGAGGACTCGGCCTCTTCTCAGAAGTTGGATTTGTCAGGAGAAATGGTGCCTGGTCCCCTGCCAGCCCCCGGAAAGTGCAGGAAGCGAAGAATGCCTGTTGGAAGATTCCAGACGTTTTCGGACCAGGAGGGTTTGGGCTGCCCGGAGAGAACTCATGGGTCCTCCGTGCCCAAGGAGAGCCTGAGCAGACAGGACAGCTCAGAAAGCAGGAACGGGAGGACCTTGTCTCAGCCTGAGGCCTCGGAGACTGAGGAGCAGAGGTCTCGGGGTGTGACCGACACCAGAGAGGTGAGAGAAGGGCTGGGGAGCAGCAGGCCCACGGCACTGCCTCCCTAATGTGGGGCTGTTACGGCTTTGGCGGGGCCGTGATTACGCCTGCGGCACTGACTGTGTCCCTCCCTGATGCAGGGCTGTTACGGCGGTGCCGTGATTACGCCTACGGCACTGACCGTGTCCCTCCCTGATGCGGGGCTGTTACGGCTTTGGCGGTGCCGTGATTACGCCTACGGCACTGACCGTGTCCCAGGATAAAGGGAATCATCACACTTAGGGTTCCAGGGTGCTTGCTGCTGCGTTTTGTTGGACGTGTGCCTCTGTGCCACACGCTGTCCTGCGCTGCTGTTCTGAGTGGAAGCCCCGTGGTGGAGAGAGGGGACTCTGCCTTACGGTGCACAGGGCATTTGTCTCCAAAGCTGGAATCGGGCATCTTGGCCGGCTGAGCCATTGATGACCCT	G	261	PASS	CEP72	CCDS34126.1	r.995-140_1296+446del888	c.905-140_1206+446del888	p.?	Del	ess splice	D	637491	638381	888	24	484.383	-	-	1	1	-	CEP72|CCDS34126.1|r.995-140_1296+446del888|c.905-140_1206+446del888|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	CEP72|CCDS34126.1|r.995-140_1296+446del888|c.905-140_1206+446del888|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	15	7	15	7	0	0	./.	2	7	0	0	22	14	24	21	2	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717399404	5	641129	GCAAGTTACCC	G	261	PASS	CEP72	CCDS34126.1	r.?	-	-	Del	intronic	D	641129	641143	10	30	484.985	-	-	1	1	1	CEP72|CCDS34126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP72|CCDS34126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	4	6	4	23	28	23	28	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717400554	5	3493736	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	3493736	3493741	1	28	479.566	-	-	4	1	1	-	-	./.	0	0	0	0	16	13	16	14	0	0	./.	6	3	6	6	33	23	33	24	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717403043	5	10826957	CA	C	1409	PASS	-	-	-	-	-	Del	-	D	10826957	10826965	1	169	1292.69	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	12	12	16	15	36	35	36	35	16	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717407050	5	22523554	A	AT	1020	PASS	CDH12	CCDS3890.1	r.?	-	-	Ins	intronic	I	22523554	22523562	1	60	905.848	-	-	7	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	3	14	5	14	24	43	24	43	5	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717408131	5	25781502	AGATGT	A	269	PASS	-	-	-	-	-	Del	-	D	25781502	25781510	5	10	269.436	-	-	1	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	1	4	2	6	17	33	17	33	2	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717408421	5	26572323	C	CG	1200	PASS	-	-	-	-	-	Ins	-	I	26572323	26572324	1	117	1065.7	-	-	0	1	1	-	-	./.	0	0	0	0	23	19	23	20	0	0	./.	8	12	9	14	40	32	40	33	9	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717408443	5	26704375	ATTT	A	696	PASS	-	-	-	-	-	Del	-	D	26704375	26704380	3	64	754.421	-	-	4	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	7	7	10	7	26	28	26	28	10	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717408816	5	27918517	A	AAGTACATAT	348	PASS	-	-	-	-	-	Ins	-	I	27918517	27918529	9	45	581.624	-	-	1	1	1	-	-	./.	0	0	0	0	8	21	8	22	0	0	./.	4	8	4	7	27	34	27	35	4	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717408817	5	27918770	GAGCCAACACGCTTGGCCTTAAA	G	394	PASS	-	-	-	-	-	Del	-	D	27918770	27918796	22	63	750.206	-	-	1	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	6	8	6	7	37	29	37	30	6	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717409687	5	29979856	C	CT	658	PASS	-	-	-	-	-	Ins	-	I	29979856	29979866	1	48	635.207	-	-	9	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	7	5	8	7	24	25	24	25	8	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717411802	5	35099954	ATG	A	660	PASS	PRLR	CCDS3909.1	r.?	-	-	Del	intronic	D	35099954	35099960	2	40	592.759	-	-	2	1	1	PRLR|CCDS3909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRLR|CCDS3909.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	4	7	10	10	31	41	31	41	10	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717413280	5	39746187	CA	C	960	PASS	-	-	-	-	-	Del	-	D	39746187	39746190	1	80	862.195	-	-	2	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	9	7	11	9	26	31	26	31	11	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717414941	5	44923470	TTTGAAATGTGAGGACATGAGATTTGGGAGGGGCCAGGAG	T	522	PASS	-	-	-	-	-	Del	-	D	44923470	44923511	39	100	969.97	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	9	9	5	3	27	31	31	37	9	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717414992	5	45214068	GGATTATAAAAATCATCCAACT	G	493	PASS	-	-	-	-	-	Del	-	D	45214068	45214092	21	78	916.082	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	12	5	9	3	30	27	33	29	12	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717415513	5	50169123	AG	A	540	PASS	-	-	-	-	-	Del	-	D	50169123	50169125	1	28	484.985	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	6	3	8	8	25	34	25	34	8	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717417315	5	55203156	ACTTACACTTTTTTTT	A	290	PASS	IL31RA	CCDS3970.2	r.?	-	-	Del	intronic	D	55203156	55203175	15	27	538.872	-	-	1	1	1	IL31RA|CCDS3970.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL31RA|CCDS3970.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	8	2	8	2	34	31	34	31	8	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717418137	5	57534316	CTTAT	C	877	PASS	-	-	-	-	-	Del	-	D	57534316	57534328	4	70	807.706	-	-	2	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	6	9	7	9	30	31	30	31	7	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717418749	5	59442781	GA	G	300	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59442781	59442789	1	6	269.436	-	-	7	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	5	0	6	2	23	24	23	24	6	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717424642	5	79099145	GGCG	GTT	300	PASS	CMYA5	CCDS47238.1	r.?	-	-	Complex	downstream	DI	79099146	79099148	3	12	0	-	-	0	1	1	CMYA5|CCDS47238.1|r.?|-|-|protein_coding:indel:5KB_downstream_variant|SO:0000010:SO:1000032:SO:0001633	CMYA5|CCDS47238.1|r.?|-|-|protein_coding:indel:5KB_downstream_variant|SO:0000010:SO:1000032:SO:0001633	./.	0	0	0	0	14	23	14	23	0	0	./.	2	3	0	0	32	35	32	35	2	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717426688	5	84846478	AG	A	837	PASS	-	-	-	-	-	Del	-	D	84846478	84846480	1	64	754.421	-	-	1	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	7	7	12	11	35	34	35	34	12	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717428177	5	90057117	G	GA	1500	PASS	GPR98	CCDS47246.1	r.?	-	-	Ins	intronic	I	90057117	90057126	1	182	1324.3	-	-	8	1	1	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	12	13	13	18	31	34	31	34	13	18	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717428708	5	91942110	GA	G	960	PASS	-	-	-	-	-	Del	-	D	91942110	91942115	1	72	862.195	-	-	4	1	1	-	-	./.	0	0	0	0	28	12	28	12	0	0	./.	11	5	13	7	39	26	39	26	13	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717431056	5	99946752	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	99946752	99946760	1	56	689.095	-	-	7	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	7	6	8	8	29	36	30	36	8	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717436815	5	117467474	GT	G	1440	PASS	-	-	-	-	-	Del	-	D	117467474	117467479	1	160	1286.07	-	-	4	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	15	9	16	10	42	28	42	28	16	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717437589	5	120254250	GT	G	300	PASS	-	-	-	-	-	Del	-	D	120254250	120254256	1	10	269.436	-	-	5	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	4	1	5	3	50	37	50	37	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717439163	5	124935175	GC	G	989	PASS	-	-	-	-	-	Del	-	D	124935175	124935177	1	90	916.082	-	-	1	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	8	9	10	11	33	27	33	27	10	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717441624	5	133081967	C	CTT	300	PASS	-	-	-	-	-	Ins	-	I	133081967	133081971	2	12	263.415	-	-	3	1	1	-	-	./.	0	0	0	0	28	21	28	22	0	0	./.	2	3	2	4	34	24	34	24	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717442136	5	134812434	CTCAGAGGAA	C	406	PASS	-	-	-	-	-	Del	-	D	134812434	134812446	9	60	747.798	-	-	1	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	5	9	5	11	38	34	38	34	5	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717442679	5	136929600	TTTTTATAATTTTATGAC	T	290	PASS	-	-	-	-	-	Del	-	D	136929600	136929627	17	35	538.872	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	6	4	5	41	33	41	34	4	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717443228	5	138097799	TAA	T	600	PASS	CTNNA1	CCDS34243.1	r.?	-	-	Del	intronic	D	138097799	138097802	2	36	538.872	-	-	2	1	1	CTNNA1|CCDS34243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTNNA1|CCDS34243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	5	5	8	5	50	42	50	42	8	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717446434	5	147158092	G	GT	420	PASS	JAKMIP2	CCDS4285.1	r.?	-	-	Ins	intronic	I	147158092	147158093	1	18	372.394	-	-	0	1	1	JAKMIP2|CCDS4285.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	JAKMIP2|CCDS4285.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	20	19	0	0	./.	2	5	2	5	32	47	32	47	2	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717446439	5	147178445	AT	A	360	PASS	-	-	-	-	-	Del	-	D	147178445	147178452	1	12	323.323	-	-	6	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	1	5	2	5	47	38	47	38	2	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717446565	5	147527029	GT	G	300	PASS	-	-	-	-	-	Del	-	D	147527029	147527034	1	12	268.834	-	-	4	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	3	2	18	8	40	37	40	37	18	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717447496	5	150544884	TGAATTAGAAAAAGCAGG	T	551	PASS	-	-	-	-	-	Del	-	D	150544884	150544903	17	110	1017.84	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	9	10	9	9	22	36	22	37	9	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717449048	5	155107464	TGGAGAGGGGGCTCAA	T	278	PASS	-	-	-	-	-	Del	-	D	155107464	155107483	15	32	538.872	-	-	1	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	3	7	4	7	21	33	21	33	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717450233	5	158672114	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	158672114	158672132	2	12	322.721	-	-	8	1	-	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	1	5	3	7	32	37	32	37	3	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717450234	5	158672370	CTCCTGTCTTGGCA	C	319	PASS	-	-	-	-	-	Del	-	D	158672370	158672387	13	36	592.759	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	8	3	8	32	33	32	33	3	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717450703	5	160065309	GTGCCTTATCTTGTCCTGTGACCTTTTAATCAT	G	406	PASS	ATP10B	CCDS43394.1	r.?	-	-	Del	intronic	D	160065309	160065343	32	60	748.4	-	-	1	1	1	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	20	25	20	0	0	./.	9	5	6	5	35	39	38	39	9	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717451047	5	161160443	GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	G	300	PASS	-	-	-	-	-	Del	-	D	161160443	161160487	41	10	269.436	-	-	1	1	-	-	-	./.	0	0	0	0	31	18	31	18	0	0	./.	4	1	0	0	57	28	57	28	4	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717451101	5	161311429	AT	A	1140	PASS	GABRA1	CCDS4357.1	r.?	-	-	Del	intronic	D	161311429	161311437	1	98	1023.86	-	-	7	1	1	GABRA1|CCDS4357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABRA1|CCDS4357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	13	6	14	8	47	38	47	38	14	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717451973	5	163738660	CT	C	300	PASS	-	-	-	-	-	Del	-	D	163738660	163738664	1	10	269.436	-	-	3	1	1	-	-	./.	0	0	0	0	23	26	23	26	0	0	./.	1	4	1	4	43	31	43	31	1	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717452594	5	165633610	AATTGCCATGGC	A	493	PASS	-	-	-	-	-	Del	-	D	165633610	165633629	11	78	916.082	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	12	5	14	6	36	31	36	31	14	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717463841	6	17712781	C	CTATA	449	PASS	-	-	-	-	-	Ins	-	I	17712781	17712786	4	21	410.423	-	-	2	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	6	2	6	4	22	19	22	19	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717464312	6	18981505	CA	C	900	PASS	-	-	-	-	-	Del	-	D	18981505	18981511	1	70	808.451	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	6	9	10	12	28	20	28	20	10	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717467034	6	26499467	AAAAAAAAAAGAAAAGAAAAG	A	290	PASS	BTN1A1	CCDS4614.1	r.?	-	-	Del	upstream	D	26499467	26499491	20	36	533.95	-	-	1	1	-	BTN1A1|CCDS4614.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	BTN1A1|CCDS4614.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	23	15	23	0	0	./.	5	5	5	5	27	27	27	27	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717467574	6	28445891	TGCTATACAGACAAAACAAA	T	377	PASS	-	-	-	-	-	Del	-	D	28445891	28445912	19	54	701.179	-	-	1	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	8	5	8	5	37	25	37	25	8	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717475412	6	48804384	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	48804384	48804393	1	42	586.683	-	-	8	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	5	6	8	6	40	29	41	29	8	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717479353	6	57798600	CCACCTAAAATTAAGATCTAGGGACAACATCAGGAGGCTGAGTCAGGAGAATGGTATGAACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGGTCGTGCCACTG	C	349	PASS	-	-	-	-	-	Del	-	D	57798600	57798705	101	56	700.577	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	7	6	0	0	24	13	31	19	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717480694	6	64949392	ACAAGTGATCATGAGCTTTTTTT	A	276	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	64949392	64949417	22	32	538.767	-	-	1	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	18	26	18	0	0	./.	7	3	6	3	31	32	32	32	7	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717481424	6	66955874	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	66955874	66955882	1	16	426.678	-	-	7	1	1	-	-	./.	0	0	0	0	19	26	19	26	0	0	./.	7	1	11	7	41	24	41	25	11	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717485020	6	79199718	ACTCCAGTCACATT	A	261	PASS	-	-	-	-	-	Del	-	D	79199718	79199736	13	30	485.432	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	4	5	4	15	26	15	26	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717486930	6	87144548	TG	T	720	PASS	-	-	-	-	-	Del	-	D	87144548	87144553	1	45	645.436	-	-	4	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	8	4	9	5	15	13	15	13	9	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717487971	6	90821855	ATCTCTTTG	A	290	PASS	BACH2	CCDS5026.1	r.?	-	-	Del	intronic	D	90821855	90821869	8	35	534.552	-	-	1	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	6	4	7	5	30	23	30	23	7	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717493502	6	112487984	AG	A	360	PASS	LAMA4	CCDS34514.1	r.?	-	-	Del	intronic	D	112487984	112487986	1	12	323.621	-	-	1	1	1	LAMA4|CCDS34514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMA4|CCDS34514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	1	5	5	5	23	21	23	21	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717496857	6	124155685	TC	T	540	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124155685	124155689	1	30	485.432	-	-	3	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	25	18	25	0	0	./.	5	4	8	9	28	27	28	27	8	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717497524	6	126941478	TCTTGGAAAATCATAT	TATTCCTC	319	PASS	-	-	-	-	-	Complex	-	DI	126941479	126941493	15	42	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	5	0	0	21	20	21	20	6	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717502049	6	144376769	TTCACTTTCATCCTTAGCA	T	290	PASS	PLAGL1	CCDS5202.1	r.?	-	-	Del	intronic	D	144376769	144376788	18	35	538.767	-	-	1	1	1	PLAGL1|CCDS5202.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLAGL1|CCDS5202.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	6	4	7	13	17	13	17	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717505038	6	154463414	A	AGAGGCAGTCTCTCCTGGAGGGGTGGGGTGGGGAGTCCTGTCCTGCCCTGCTCATGCCTGTGGGTAGCTCATCAGGCAT	290	PASS	OPRM1	CCDS43517.1	r.?	-	-	Ins	intronic	I	154463414	154463429	78	27	69.7619	-	-	0	1	1	OPRM1|CCDS43517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OPRM1|CCDS43517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	8	2	0	0	18	16	27	18	8	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717507253	6	161142783	ATTTTTCAGTGTTCTTGTGCCTCCTTCTGATGGAACTTGTACCTGTGGTGGGTTTGGAAAGAAAGAGTAGTAGGCTTCT	A	377	PASS	PLG	CCDS5279.1	r.?	-	-	Del	intronic	D	161142783	161142862	78	56	701.179	-	-	1	1	1	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	22	22	22	0	0	./.	7	6	0	0	23	26	30	32	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717509142	6	166209583	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	166209583	166209584	1	12	258.245	-	-	0	1	-	-	-	./.	0	0	0	0	10	18	10	19	0	0	./.	2	3	3	4	24	36	24	36	3	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717509552	6	167419671	TGTA	T	594	PASS	FGFR1OP	CCDS5296.1	r.?	-	-	Del	intronic	D	167419671	167419679	3	56	701.179	-	-	2	1	1	FGFR1OP|CCDS5296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGFR1OP|CCDS5296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	7	6	9	7	38	33	38	33	9	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717509631	6	167636501	GTTCTGGTAAAATCTGCC	G	261	PASS	-	-	-	-	-	Del	-	D	167636501	167636519	17	10	485.432	-	-	1	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	9	0	8	0	43	18	45	18	10	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717510157	6	169167752	GT	G	1769	PASS	-	-	-	-	-	Del	-	D	169167752	169167759	1	255	1610.88	-	-	6	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	16	14	18	21	51	43	51	43	18	21	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717510207	6	169277127	GGGAGGCCTGGCGGGT	G	1160	PASS	-	-	-	-	-	Del	-	D	169277127	169277148	15	432	2132.19	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	23	17	22	17	37	33	38	33	23	17	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717510392	6	169690108	TATTTG	T	476	PASS	-	-	-	-	-	Del	-	D	169690108	169690118	5	32	536.358	-	-	1	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	7	3	8	4	39	32	39	32	8	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717514717	7	9426811	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	9426811	9426821	1	36	526.817	-	-	9	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	5	5	8	7	56	49	57	49	8	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717514744	7	9551138	TTGC	T	629	PASS	-	-	-	-	-	Del	-	D	9551138	9551142	3	30	592.142	-	-	1	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	9	2	9	3	48	28	48	28	9	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717514903	7	9961080	GTTAGGATTTTGCA	G	870	PASS	-	-	-	-	-	Del	-	D	9961080	9961095	13	256	1606.34	-	-	1	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	15	15	15	14	34	37	34	38	15	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717516871	7	14802135	AAAAT	A	1525	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14802135	14802148	4	221	1508.8	-	-	3	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	32	22	32	0	0	./.	16	12	17	17	37	27	37	27	17	17	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717517641	7	16848008	TGTGAGGGTTAAGAGGGCAAGCTGTAGATTCAGATAGGTTCGAGTTTGAATCAAGTTTCCTGACTGTTACATACTCTACTAATCCAGGCAACTTACTTAACTTCTCTGTGCTTTAGTTGTCTCACTTGTAGGTCTTCCTATCCCTACTTTTTTACTATATAGGATCTGTGGAAGATTACATAAGATAATAGACATAAAGTGCTTAGAATGGTACATAACACATAGTAAGCACTCAAAAATATTAGTTAGTAATACAGAATGTATTACTTCTCTGTATTATGATCATTTAGGTCTCAGTCTATGACAGCAGAATCTTTGTTGGATTACCCTTTGATTATAGCCTATCACAAGTCTTAAACTTTTCACATATATTCATTGGAAATATTCATTTGTCATTATAACAATCTCACCAGACTTCATTATTTTCTTTTAAAAAAGTA	T	261	PASS	AGR2	CCDS5364.1	r.?	-	-	Del	upstream	D	16848008	16848448	439	30	484.973	-	-	1	1	1	AGR2|CCDS5364.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AGR2|ENST00000412973|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	4	5	0	0	36	30	40	35	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717520880	7	25567277	CT	C	420	PASS	-	-	-	-	-	Del	-	D	25567277	25567282	1	18	377.201	-	-	4	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	3	5	30	16	30	16	3	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717522877	7	31065237	TG	T	300	PASS	AC006978.1	ENST00000507825	r.?	-	-	Del	intronic	D	31065237	31065242	1	6	264.613	-	-	4	1	1	AC006978.1|ENST00000507825|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC006978.1|ENST00000507825|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	0	5	0	6	37	41	37	41	0	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717522956	7	31265476	TTTTTCATTCATAATTTGAACAG	T	261	PASS	-	-	-	-	-	Del	-	D	31265476	31265501	22	30	484.973	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	5	4	5	4	48	44	48	44	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717523206	7	31813834	AG	A	840	PASS	PDE1C	ENST00000396193	r.?	-	-	Del	intronic	D	31813834	31813837	1	63	751.391	-	-	2	1	1	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	8	6	12	11	64	61	64	61	12	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717523423	7	32415775	AG	A	300	PASS	-	-	-	-	-	Del	-	D	32415775	32415777	1	10	269.429	-	-	1	1	-	-	-	./.	0	0	0	0	24	12	24	12	0	0	./.	4	1	5	1	43	51	43	51	5	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717526018	7	38687911	T	TA	1469	PASS	-	-	-	-	-	Ins	-	I	38687911	38687918	1	176	1330.89	-	-	6	1	1	-	-	./.	0	0	0	0	14	23	15	23	0	0	./.	15	10	28	20	58	42	59	43	28	20	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717526187	7	39087244	CA	C	1020	PASS	POU6F2	CCDS34620.2	r.?	-	-	Del	intronic	D	39087244	39087253	1	70	914.855	-	-	8	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	13	4	15	6	56	45	56	45	15	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717526325	7	39508698	TGAAAGAG	T	464	PASS	POU6F2	CCDS34620.2	r.?	-	-	Del	downstream	D	39508698	39508708	7	77	862.173	-	-	1	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	22	11	22	0	0	./.	6	10	7	10	36	39	36	39	7	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717528408	7	44192023	TTCTAAAGGCACAGAGAGAAGTGTGTCAGCCTCAGGGACACCCACAGGCTGGCCTTGGGCTGGGTGGGCCCCAGGTGACTGAGCCCGGATATTACAAAGAGGAGGAGGGAAGGCACAAGGGACTAAGGGAGCTGGACAAGGGGCCACCAGACACCTGGGGACACCAGTGTCAACTGTGGAAGGGGTCAAAGGTCAACCAGGGAAAAGTCAATGGGAAACTCCTGCCCTGGACAGTCACCGAGAGCCCAGGGACCAACTGAGGA	T	493	PASS	GCK	CCDS5480.1	r.374-261_374del262	c.212-261_212del262	p.?	Del	ess splice	D	44192023	44192290	262	48	912.447	-	-	1	1	1	GCK|CCDS5480.1|r.374-261_374del262|c.212-261_212del262|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	GCK|CCDS5480.1|r.374-261_374del262|c.212-261_212del262|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	12	19	12	19	0	0	./.	2	15	0	0	22	22	24	37	2	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717528410	7	44192634	ACAGGGGTGAGCCACTGCACCTGGC	A	377	PASS	GCK	CCDS5479.1	r.?	-	-	Del	intronic	D	44192634	44192663	24	50	695.097	-	-	1	1	1	GCK|CCDS5479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GCK|CCDS5479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	9	4	9	3	34	17	34	18	9	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717528421	7	44227601	GCCATCTTT	G	464	PASS	GCK	CCDS5479.1	r.?	-	-	Del	intronic	D	44227601	44227611	8	80	862.173	-	-	1	1	1	GCK|CCDS5479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GCK|CCDS5479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	7	9	10	15	42	48	42	48	10	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717529028	7	45800175	CA	C	522	PASS	-	-	-	-	-	Del	-	D	45800175	45800179	1	70	915.457	-	-	3	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	13	6	14	40	62	40	62	6	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717530346	7	49381194	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	49381194	49381203	1	56	692.087	-	-	8	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	6	7	9	12	46	66	46	66	9	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717531002	7	51249916	G	GA	360	PASS	COBL	CCDS34637.1	r.?	-	-	Ins	intronic	I	51249916	51249926	1	15	314.886	-	-	9	1	1	COBL|CCDS34637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COBL|CCDS34637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	24	17	24	0	0	./.	2	4	2	4	47	52	48	52	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717531358	7	52028059	AT	A	300	PASS	-	-	-	-	-	Del	-	D	52028059	52028064	1	10	268.225	-	-	4	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	4	1	4	1	32	45	32	45	4	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717532648	7	54961855	ATTCATGTATTGCTG	A	667	PASS	-	-	-	-	-	Del	-	D	54961855	54961872	14	144	1237.57	-	-	1	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	8	15	8	15	43	37	43	37	8	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717532669	7	55054470	CG	C	540	PASS	-	-	-	-	-	Del	-	D	55054470	55054479	1	30	482.564	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	5	4	8	4	31	33	31	33	8	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717534961	7	61822337	TG	T	259	PASS	-	-	-	-	-	Del	-	D	61822337	61822341	1	49	640.609	-	-	3	1	1	-	-	./.	0	0	0	0	61	98	61	98	0	0	./.	6	6	7	6	141	174	141	174	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717535337	7	62302717	GTTTCTTGTCATTCAGCAGTTTGGAAACAC	G	377	PASS	-	-	-	-	-	Del	-	D	62302717	62302750	29	50	700.516	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	9	3	8	33	30	34	31	4	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717539411	7	69878163	CAAAAGCA	C	377	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69878163	69878173	7	50	699.312	-	-	1	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	9	4	10	7	40	23	40	23	10	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717546070	7	88790810	A	AAT	360	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Ins	intronic	I	88790810	88790818	2	15	316.09	-	-	3	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	13	23	14	0	0	./.	2	4	6	4	43	30	43	30	6	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717548381	7	96881428	TCATGAGAAGAATCTATCTTTC	T	261	PASS	-	-	-	-	-	Del	-	D	96881428	96881454	21	28	484.973	-	-	1	1	1	-	-	./.	0	0	0	0	27	15	27	15	0	0	./.	3	6	3	6	26	36	26	36	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717551235	7	103861224	CCAAGCTTG	CATAA	776	PASS	-	-	-	-	-	Complex	-	DI	103861225	103861232	8	224	0	-	-	0	1	1	-	-	./.	0	0	0	0	25	18	25	18	0	0	./.	13	15	0	0	24	30	24	31	13	15	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717552437	7	107446755	GGGATTACA	G	290	PASS	SLC26A3	CCDS5748.1	r.?	-	-	Del	upstream	D	107446755	107446767	8	27	537.654	-	-	1	1	1	SLC26A3|CCDS5748.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SLC26A3|CCDS5748.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	24	14	24	0	0	./.	2	8	3	9	12	29	12	29	3	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717553397	7	110713680	TC	T	300	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Del	intronic	D	110713680	110713684	1	12	269.429	-	-	3	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	28	17	28	0	0	./.	2	3	2	6	34	47	34	47	2	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717555276	7	117373707	ATTTAAATATAACATG	A	261	PASS	CTTNBP2	CCDS5774.1	r.?	-	-	Del	intronic	D	117373707	117373723	15	30	480.156	-	-	1	1	1	CTTNBP2|CCDS5774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTTNBP2|CCDS5774.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	4	5	4	29	36	29	36	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717558126	7	126974981	CCATATCATCCAGCAGTCT	C	261	PASS	-	-	-	-	-	Del	-	D	126974981	126975002	18	28	484.973	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	6	3	5	3	23	24	24	24	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717558800	7	128871079	C	CA	300	PASS	AHCYL2	CCDS5812.1	r.?	-	-	Ins	intronic	I	128871079	128871088	1	12	265.215	-	-	8	1	1	AHCYL2|CCDS5812.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AHCYL2|CCDS5812.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	2	3	5	3	23	21	23	21	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717561375	7	136121244	CCTTT	C	389	PASS	-	-	-	-	-	Del	-	D	136121244	136121256	4	20	377.201	-	-	2	1	1	-	-	./.	0	0	0	0	27	23	27	23	0	0	./.	3	4	3	4	35	26	35	26	3	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717564525	7	147107107	GAC	G	360	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147107107	147107111	2	16	323.315	-	-	1	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	3	3	3	3	28	24	28	24	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717564649	7	147360865	TATAC	T	389	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147360865	147360877	4	18	377.201	-	-	2	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	2	5	4	6	26	21	26	21	4	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717565971	7	151538510	AGGGATGGTAGTGATAGTAGGTAGGGATGGTAGTGATAGTAGTGATGGTAGGTAATGATGATGGTAGTGATGGTAGGTT	A	383	PASS	PRKAG2	CCDS43683.1	r.?	-	-	Del	intronic	D	151538510	151538603	78	32	532.236	-	-	1	1	-	PRKAG2|CCDS43683.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PRKAG2|CCDS43683.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	3	7	0	0	39	24	39	24	3	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717568797	8	567019	AG	A	300	PASS	-	-	-	-	-	Del	-	D	567019	567021	1	12	269.215	-	-	1	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	2	3	2	4	19	19	19	19	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717579244	8	34947764	AGTGT	A	689	PASS	-	-	-	-	-	Del	-	D	34947764	34947770	4	40	646.115	-	-	2	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	9	3	11	5	37	24	37	24	11	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717579487	8	35981419	CT	C	360	PASS	-	-	-	-	-	Del	-	D	35981419	35981423	1	16	322.455	-	-	3	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	3	3	5	24	25	24	25	3	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717582663	8	48521284	TTTTTTTA	T	319	PASS	KIAA0146	CCDS43737.1	r.?	-	-	Del	intronic	D	48521284	48521305	7	42	592.272	-	-	2	1	1	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0146|CCDS43737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	6	6	8	25	35	25	35	6	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717582857	8	49273379	CA	C	780	PASS	-	-	-	-	-	Del	-	D	49273379	49273381	1	56	699.958	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	6	7	7	9	43	52	43	52	7	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717583088	8	50205717	TGGCA	T	598	PASS	-	-	-	-	-	Del	-	D	50205717	50205723	4	42	588.66	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	5	6	5	10	27	29	27	29	5	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717584049	8	52816694	CA	C	1229	PASS	PCMTD1	CCDS6148.1	r.?	-	-	Del	upstream	D	52816694	52816700	1	126	1130.1	-	-	5	1	1	PCMTD1|CCDS6148.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000228801|ENST00000423716|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	8	13	10	17	39	48	39	48	10	17	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717584942	8	55164145	AG	A	900	PASS	-	-	-	-	-	Del	-	D	55164145	55164147	1	70	807.643	-	-	1	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	6	9	8	12	47	37	47	37	8	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717585042	8	55371938	GGC	G	300	PASS	SOX17	CCDS6159.1	r.833_834delGC	c.629_630delGC	p.P212fs*152	Del	frameshift	D	55371938	55371945	2	12	260.184	-	-	3	1	1	SOX17|CCDS6159.1|r.833_834delGC|c.629_630delGC|p.P212fs*152|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SOX17|CCDS6159.1|r.833_834delGC|c.629_630delGC|p.P212fs*152|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	21	12	21	0	0	./.	2	3	2	4	38	58	38	58	2	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717585263	8	55960197	AAGTTGTCACAAC	A	319	PASS	-	-	-	-	-	Del	-	D	55960197	55960212	12	42	592.272	-	-	1	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	6	5	6	6	58	39	58	39	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717586156	8	58658341	AGGTCGGATTTTGGATTTTCAGATTAAGGATGTTTAACTGGTAAGTATAATGCAAATATTTCAAAATCTGAAAAAACATCTGAAATCTGAAACACTTCT	A	580	PASS	-	-	-	-	-	Del	-	D	58658341	58658444	98	121	1075.05	-	-	1	1	1	-	-	./.	0	0	0	0	13	26	13	26	0	0	./.	10	10	0	0	36	27	46	37	10	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717588006	8	63989578	GAC	G	2460	PASS	TTPA	CCDS6178.1	r.?	-	-	Del	intronic	D	63989578	63989581	2	450	2206.96	-	-	1	1	1	TTPA|CCDS6178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTPA|CCDS6178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	24	17	37	22	57	41	57	41	37	22	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717589692	8	68203193	GT	G	360	PASS	ARFGEF1	CCDS6199.1	r.?	-	-	Del	intronic	D	68203193	68203198	1	16	323.057	-	-	4	1	1	ARFGEF1|CCDS6199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARFGEF1|CCDS6199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	3	3	3	3	42	38	42	38	3	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717590640	8	70461154	TC	T	1827	PASS	SULF1	CCDS6204.1	r.?	-	-	Del	intronic	D	70461154	70461159	1	189	1721.17	-	-	4	1	1	SULF1|CCDS6204.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SULF1|CCDS6204.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	26	6	29	11	80	45	80	45	29	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717590777	8	70759643	T	TG	313	PASS	-	-	-	-	-	Ins	-	I	70759643	70759646	1	42	585.649	-	-	2	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	5	6	6	6	61	68	61	68	6	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717590829	8	70832785	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	70832785	70832804	2	16	323.057	-	-	9	1	-	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	4	4	64	58	64	58	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717591949	8	73221034	TG	T	360	PASS	-	-	-	-	-	Del	-	D	73221034	73221036	1	12	322.455	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	5	1	8	1	50	42	50	42	8	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717594239	8	77996331	AT	A	300	PASS	-	-	-	-	-	Del	-	D	77996331	77996336	1	10	268.01	-	-	4	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	1	4	8	5	69	57	69	57	8	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717594529	8	78541575	GTTGCTTTCAAACT	GGTAC	261	PASS	-	-	-	-	-	Complex	-	DI	78541576	78541588	13	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	7	0	0	54	79	54	79	2	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717595282	8	80430879	GA	G	629	PASS	-	-	-	-	-	Del	-	D	80430879	80430887	1	40	592.272	-	-	7	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	7	4	10	5	85	61	85	61	10	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717596991	8	84087611	AAGGGCTAGATATTAAATAAATT	A	841	PASS	-	-	-	-	-	Del	-	D	84087611	84087637	22	234	1561.44	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	12	17	11	16	49	59	50	60	12	17	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717598760	8	88206043	AAATAAAGAG	A	290	PASS	-	-	-	-	-	Del	-	D	88206043	88206056	9	36	538.429	-	-	1	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	5	7	6	57	89	57	89	7	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717598761	8	88206171	TG	T	600	PASS	-	-	-	-	-	Del	-	D	88206171	88206175	1	27	537.827	-	-	3	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	8	2	12	3	83	47	83	47	12	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717599523	8	90060746	TC	T	1140	PASS	-	-	-	-	-	Del	-	D	90060746	90060748	1	80	1021.81	-	-	1	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	4	15	7	19	58	90	58	90	7	19	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717600218	8	91636961	TAAAA	T	664	PASS	TMEM64	CCDS34920.2	r.2255_2258delUUUU	c.?	p.?	Del	3'UTR variant	D	91636961	91636968	4	54	699.958	-	-	6	1	1	TMEM64|CCDS34920.2|r.2255_2258delUUUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TMEM64|CCDS34920.2|r.2255_2258delUUUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	27	21	27	21	0	0	./.	8	5	9	7	64	61	64	61	9	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717601102	8	93602012	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	93602012	93602028	2	15	321.251	-	-	7	1	-	-	-	./.	0	0	0	0	11	24	11	24	0	0	./.	2	4	2	6	56	77	56	77	2	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717601386	8	94291367	TTTGTTACC	T	261	PASS	-	-	-	-	-	Del	-	D	94291367	94291377	8	10	484.586	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	9	0	11	0	87	59	87	59	11	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717601442	8	94444095	TTC	T	269	PASS	AC011118.2	ENST00000501400	r.?	-	-	Del	intronic	D	94444095	94444114	2	10	267.408	-	-	9	1	1	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	4	1	6	2	58	67	58	67	6	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717601638	8	94775860	C	CT	300	PASS	TMEM67	CCDS47893.1	r.?	-	-	Ins	intronic	I	94775860	94775870	1	6	266.204	-	-	9	1	1	TMEM67|CCDS47893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM67|CCDS47893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	5	0	7	0	107	93	107	93	7	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717603358	8	97682565	TG	T	360	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Del	intronic	D	97682565	97682568	1	16	321.251	-	-	2	1	-	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	28	19	28	0	0	./.	3	3	5	6	85	94	85	94	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717603970	8	98821194	G	GA	269	PASS	LAPTM4B	CCDS6275.1	r.?	-	-	Ins	intronic	I	98821194	98821200	1	6	259.582	-	-	5	1	1	LAPTM4B|CCDS6275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LAPTM4B|CCDS6275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	5	0	8	2	74	81	76	81	8	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717605772	8	102156183	GTGCAGTGGACTCTGTACTCTGATGAGGCCTCAGGAGGTGTGGTCAGAGAATCAACACCAGATGGTCCTAGAAGAACTGATTGTGAACTGTTATTGTCAAAGAAATCATCATAGGAGAACTGTAACTGTTGGTCAATCTGCTGATGTTTTATTCATGCACTTCATTATTCAGTCAAGAAACTTTTTTTGTATTAGATTCTGAGAACATAGAGATGGGCAAATTACCATCCTGCCCTCTAGGACCCCACATTTCTGT	G	377	PASS	-	-	-	-	-	Del	-	D	102156183	102156444	255	54	699.958	-	-	1	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	8	5	0	0	75	58	83	63	8	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717606228	8	103109763	ATGTAGATGC	A	319	PASS	NCALD	CCDS6292.1	r.?	-	-	Del	intronic	D	103109763	103109776	9	36	591.67	-	-	1	1	1	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	8	3	10	3	87	63	87	63	10	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717606647	8	103692646	AG	A	567	PASS	-	-	-	-	-	Del	-	D	103692646	103692648	1	40	589.262	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	7	7	12	65	65	65	65	7	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717606798	8	103896386	GGCAGGAGAA	GTAC	261	PASS	-	-	-	-	-	Complex	-	DI	103896387	103896395	9	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	6	3	0	0	75	67	75	67	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717607796	8	105793921	AG	A	420	PASS	-	-	-	-	-	Del	-	D	105793921	105793924	1	18	376.9	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	2	8	2	80	63	80	63	8	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717608062	8	106274394	TGA	T	1020	PASS	-	-	-	-	-	Del	-	D	106274394	106274398	2	84	912.921	-	-	1	1	1	-	-	./.	0	0	0	0	13	24	13	24	0	0	./.	6	11	9	12	78	90	78	90	9	12	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717610182	8	110659013	ATCGTGGACTTTTTTC	A	377	PASS	ENSG00000147642	CCDS47912.1	r.?	-	-	Del	intronic	D	110659013	110659031	15	44	692.733	-	-	1	1	1	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AC079061.3|ENST00000499579|r.1776_1790delUCGUGGACUUUUUUC|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	20	16	20	16	0	0	./.	3	10	3	10	67	78	67	78	3	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717610590	8	111643219	GGCTCAT	G	435	PASS	-	-	-	-	-	Del	-	D	111643219	111643228	6	70	804.031	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	9	6	9	8	71	77	71	77	9	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717610999	8	112482534	TG	T	449	PASS	-	-	-	-	-	Del	-	D	112482534	112482536	1	9	407.865	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	8	0	20	0	75	69	75	69	20	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717611417	8	113422073	G	GT	397	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113422073	113422083	1	18	372.686	-	-	9	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	25	13	25	0	0	./.	2	5	3	5	72	75	72	76	3	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717613058	8	117080227	CCT	C	420	PASS	AF130342.1	ENST00000505156	r.?	-	-	Del	intronic	D	117080227	117080244	2	20	376.298	-	-	8	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	3	4	3	6	80	86	80	86	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717613556	8	118018174	AAAGT	A	509	PASS	SLC30A8	CCDS6322.1	r.?	-	-	Del	intronic	D	118018174	118018184	4	30	484.586	-	-	2	1	1	SLC30A8|CCDS6322.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC30A8|CCDS6322.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	5	4	7	7	71	88	71	88	7	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717615350	8	121523154	A	AG	480	PASS	MTBP	CCDS6333.1	r.?	-	-	Ins	intronic	I	121523154	121523155	1	24	416.896	-	-	0	1	1	MTBP|CCDS6333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTBP|CCDS6333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	5	3	7	4	63	94	63	94	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717615451	8	121732380	ACCTAT	A	358	PASS	SNTB1	CCDS6334.1	r.?	-	-	Del	intronic	D	121732380	121732386	5	18	376.9	-	-	1	1	1	SNTB1|CCDS6334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTB1|CCDS6334.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	10	22	10	0	0	./.	2	5	2	5	50	84	50	84	2	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717615917	8	122690347	CGAGAG	C	360	PASS	-	-	-	-	-	Del	-	D	122690347	122690355	5	7	323.057	-	-	1	1	1	-	-	./.	0	0	0	0	20	6	20	6	0	0	./.	6	0	10	1	65	67	65	67	10	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717615922	8	122693307	ATGGTGCAGCATC	A	1450	PASS	-	-	-	-	-	Del	-	D	122693307	122693321	12	672	2683.72	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	27	23	29	23	66	51	66	53	29	25	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717617059	8	124704122	TAC	T	360	PASS	ANXA13	CCDS34939.1	r.?	-	-	Del	intronic	D	124704122	124704137	2	16	320.649	-	-	7	1	1	ANXA13|CCDS34939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANXA13|CCDS34939.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	3	3	4	4	78	65	78	65	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717617083	8	124750663	TTAAGGGAGAACATGTGATATTTGTTA	T	261	PASS	ANXA13	CCDS34939.1	r.?	-	-	Del	upstream	D	124750663	124750714	26	30	482.78	-	-	1	1	1	ANXA13|CCDS34939.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ANXA13|CCDS34939.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	18	16	18	0	0	./.	4	5	1	3	51	77	54	79	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717617572	8	125677198	ATTTTAGTTGGCAGGATTT	A	348	PASS	MTSS1	CCDS6353.1	r.?	-	-	Del	intronic	D	125677198	125677221	18	40	644.911	-	-	1	1	1	MTSS1|CCDS6353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTSS1|CCDS6353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	3	9	4	9	91	85	91	85	4	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717619118	8	128564785	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	128564785	128564795	1	18	371.482	-	-	9	1	1	-	-	./.	0	0	0	0	20	12	20	13	0	0	./.	2	5	4	5	84	86	86	86	4	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717622121	8	134897584	TAAGTCTGAGAAAGAGCC	T	290	PASS	-	-	-	-	-	Del	-	D	134897584	134897606	17	32	533.613	-	-	1	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	7	3	5	4	87	58	87	58	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717622293	8	135382009	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	135382009	135382013	1	10	261.388	-	-	3	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	5	3	70	60	70	61	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717622613	8	136240510	CT	C	540	PASS	-	-	-	-	-	Del	-	D	136240510	136240512	1	24	477.963	-	-	1	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	2	7	2	8	53	48	53	48	2	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717622771	8	136693647	TCTGCTGG	T	1479	PASS	-	-	-	-	-	Del	-	D	136693647	136693656	7	682	2735.15	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	30	21	41	27	67	47	67	47	41	27	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717622871	8	136949438	TGATGGCTACAGTCACTAGGTGGTAGGGATTTCTCAGCTTCATTATAATCTCAAGG	T	261	PASS	-	-	-	-	-	Del	-	D	136949438	136949501	55	30	484.586	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	4	0	0	45	35	50	39	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717623360	8	138203742	GTGAATCAGTATTGAGAATACGGTCTGAATGGTGCTATTT	G	551	PASS	-	-	-	-	-	Del	-	D	138203742	138203784	39	104	1023.02	-	-	1	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	12	7	7	1	44	53	49	59	12	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717624465	8	140596680	GT	G	360	PASS	-	-	-	-	-	Del	-	D	140596680	140596682	1	16	322.455	-	-	1	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	3	3	5	3	52	40	52	40	5	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717629177	9	8277542	ATTTC	A	600	PASS	-	-	-	-	-	Del	-	D	8277542	8277549	4	32	539.795	-	-	1	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	3	7	4	8	23	30	23	30	4	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717630855	9	13276387	CTGTACTTATATAA	C	261	PASS	-	-	-	-	-	Del	-	D	13276387	13276401	13	28	485.695	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	6	3	6	23	31	23	31	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717631313	9	14841512	ATTTCTCCACCA	ATTCAT	319	PASS	FREM1	CCDS47952.1	r.2393_2403delUGGUGGAGAAAinsaugaa	c.1803_1813delTGGTGGAGAAAinsATGAA	p.F601_E604delinsL*	Complex	nonsense	DI	14841513	14841523	11	40	0	-	-	0	1	1	FREM1|CCDS47952.1|r.2393_2403delUGGUGGAGAAAinsaugaa|c.1803_1813delTGGTGGAGAAAinsATGAA|p.F601_E604delinsL*|protein_coding:CDS:exon:indel:inframe_variant:stop_gained|SO:0000010:SO:0000316:SO:0000147:SO:1000032:SO:0001650:SO:0001587	FREM1|CCDS47952.1|r.2393_2403delUGGUGGAGAAAinsaugaa|c.1803_1813delTGGTGGAGAAAinsATGAA|p.F601_E604delinsL*|protein_coding:CDS:exon:indel:inframe_variant:stop_gained|SO:0000010:SO:0000316:SO:0000147:SO:1000032:SO:0001650:SO:0001587	./.	0	0	0	0	16	25	16	25	0	0	./.	4	7	0	0	21	26	22	27	4	7	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717631338	9	14912399	ACAA	AG	985	PASS	FREM1	CCDS47952.1	r.?	-	-	Complex	upstream	DI	14912400	14912402	3	110	0	-	-	0	1	1	FREM1|CCDS47952.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	FREM1|CCDS47952.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	22	17	22	17	0	0	./.	9	10	0	0	32	26	32	26	9	10	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717631465	9	15262634	GAAAA	G	418	PASS	TTC39B	CCDS6477.1	r.?	-	-	Del	intronic	D	15262634	15262640	4	21	432.799	-	-	5	1	1	TTC39B|CCDS6477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC39B|CCDS6477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	2	6	3	6	27	23	27	23	3	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717631850	9	16577907	A	AG	300	PASS	BNC2	CCDS6482.2	r.?	-	-	Ins	intronic	I	16577907	16577908	1	6	267.489	-	-	0	1	1	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BNC2|CCDS6482.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	15	0	0	./.	0	5	0	5	17	30	17	30	0	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717632128	9	17105127	TA	T	840	PASS	-	-	-	-	-	Del	-	D	17105127	17105131	1	63	757.399	-	-	3	1	1	-	-	./.	0	0	0	0	32	23	32	23	0	0	./.	8	6	13	9	27	26	27	26	13	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717633126	9	20225943	A	AAG	300	PASS	-	-	-	-	-	Ins	-	I	20225943	20225954	2	6	264.479	-	-	5	1	1	-	-	./.	0	0	0	0	23	6	23	6	0	0	./.	5	0	6	2	34	12	35	12	6	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717635144	9	27976921	AT	A	749	PASS	LINGO2	CCDS6524.1	r.?	-	-	Del	intronic	D	27976921	27976931	1	56	702.095	-	-	9	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	7	6	7	11	23	28	23	28	7	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717640211	9	66465718	C	CTTCAACAG	278	PASS	-	-	-	-	-	Ins	-	I	66465718	66465727	8	24	591.401	-	-	1	1	1	-	-	./.	0	0	0	0	99	84	99	87	0	0	./.	11	1	11	1	191	108	192	108	11	1	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717648306	9	87571777	TC	T	300	PASS	NTRK2	CCDS6671.1	r.?	-	-	Del	intronic	D	87571777	87571779	1	6	260.265	-	-	1	1	1	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	5	0	6	0	18	26	18	26	6	0	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717650047	9	94158431	AG	A	420	PASS	-	-	-	-	-	Del	-	D	94158431	94158433	1	20	378.7	-	-	1	1	1	-	-	./.	0	0	0	0	18	30	18	30	0	0	./.	4	3	6	3	28	33	28	33	6	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717658809	9	125186113	CCCA	CTT	300	PASS	-	-	-	-	-	Complex	-	DI	125186114	125186116	3	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	3	2	0	0	16	20	16	20	3	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717663857	X	5466647	CCT	C	629	PASS	-	-	-	-	-	Del	-	D	5466647	5466652	2	36	596.218	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	8	3	9	11	31	11	31	3	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717666500	X	30711653	C	CTTTATTTA	319	PASS	GK	CCDS48090.1	r.?	-	-	Ins	intronic	I	30711653	30711665	8	22	545.043	-	-	2	1	1	GK|CCDS48090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GK|CCDS48090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	10	1	10	2	29	28	29	28	11	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717667140	X	33761012	CCAAGAAGAGATGTCGGTTTATTTAATGTACTTTATTAAG	C	319	PASS	-	-	-	-	-	Del	-	D	33761012	33761057	39	36	597.422	-	-	1	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	8	3	2	0	27	16	33	19	8	3	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717669061	X	46919763	CTCTT	C	329	PASS	PHF16	CCDS14271.1	r.4055_4058delUCUU	c.?	p.?	Del	3'UTR variant	D	46919763	46919772	4	15	326.195	-	-	2	1	1	PHF16|CCDS14271.1|r.4055_4058delUCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PHF16|CCDS14271.1|r.4055_4058delUCUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	4	4	22	13	22	13	4	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717669557	X	50652804	GGCCGA	G	809	PASS	BMP15	CCDS14334.1	r.?	-	-	Del	upstream	D	50652804	50652813	5	63	761.121	-	-	1	1	1	BMP15|CCDS14334.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	BMP15|CCDS14334.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	8	8	8	0	0	./.	8	6	8	8	18	12	18	12	8	8	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717670008	X	54458829	ATGGCAAGC	A	290	PASS	-	-	-	-	-	Del	-	D	54458829	54458838	8	35	543.658	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	6	5	6	14	8	14	8	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717674050	X	87953230	GACAAAGTGC	G	464	PASS	-	-	-	-	-	Del	-	D	87953230	87953241	9	80	869.853	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	7	9	7	10	10	21	10	22	7	11	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717676506	X	104462774	TCCCAGAACTTAAAAAAAAAATCTGTCCA	T	319	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104462774	104462807	28	30	595.616	-	-	1	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	9	2	8	0	12	2	13	4	9	2	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717679461	X	126668457	TAGCCAGCA	T	377	PASS	-	-	-	-	-	Del	-	D	126668457	126668468	8	54	706.755	-	-	1	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	8	5	10	5	17	10	18	10	11	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717679489	X	126792441	TC	T	420	PASS	-	-	-	-	-	Del	-	D	126792441	126792444	1	20	380.561	-	-	2	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	4	3	5	4	8	13	8	13	5	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717680931	X	137624772	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	137624772	137624780	1	20	371.53	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	5	6	19	20	19	20	5	6	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717680967	X	138078839	AG	A	300	PASS	FGF13	ENST00000436198	r.?	-	-	Del	intronic	D	138078839	138078841	1	12	270.625	-	-	1	1	1	FGF13|ENST00000436198|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF13|ENST00000436198|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	2	3	3	4	12	16	12	16	3	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717680997	X	138239940	TGGGTA	T	509	PASS	FGF13	ENST00000436198	r.?	-	-	Del	intronic	D	138239940	138239949	5	24	483.874	-	-	1	1	1	FGF13|ENST00000436198|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF13|ENST00000436198|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	7	2	7	4	19	20	19	20	7	4	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717681558	X	141744189	CCCTTCCTTGCA	C	493	PASS	-	-	-	-	-	Del	-	D	141744189	141744205	11	70	924.219	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	13	7	14	12	27	12	27	7	14	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717682204	X	145280667	GTAAAATTATGAAAAAAGATT	G	290	PASS	-	-	-	-	-	Del	-	D	145280667	145280693	20	36	543.658	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	5	5	5	5	23	9	23	9	5	5	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717682387	X	146174570	C	CA	1320	PASS	-	-	-	-	-	Ins	-	I	146174570	146174579	1	135	1182.2	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	16	0	0	./.	8	14	10	18	14	29	14	29	10	18	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717683527	X	153599938	AAGGATGCTCCCAGCCCCGCAGCCTCGCGTTGGCGCTGCAGGAAACGCGCCCTAGAGCGAGGAAAGGCTGAGCAGTGTCTGGCGCGGGACTGCTTGGCCTGCAGCCGGCGCGCCTTACAAGGGACTTTCCTTCCCCAGGGCCCCTGCGGGGGGTGGGGTGGCTCTCTTCCCTAAGTCACTTGGGCTCTGCCCCGTCCCTGCACATCCCTACCCCCCGCCGTCATCCCCCTTCCCCGGGCCCCCAGGGCCTAGGGTTCCCCGGCGGCATCCCCGTCCGCCGGCCCGGC	A	319	PASS	FLNA	CCDS44021.1	r.?	-	-	Del	intronic	D	153599938	153600227	286	30	593.207	-	-	1	1	1	FLNA|CCDS44021.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FLNA|CCDS44021.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	2	9	0	0	5	5	7	14	2	9	1	1	1	1	1	1	1	1
2662688	PD18007a	PD18007b	2717686288	Y	16559360	TG	T	360	PASS	-	-	-	-	-	Del	-	D	16559360	16559363	1	15	328.372	-	-	2	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	2	5	5	16	12	16	12	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720767935	1	7050746	AC	A	360	PASS	CAMTA1	CCDS30576.1	r.?	-	-	Del	intronic	D	7050746	7050752	1	15	321.002	-	-	5	1	1	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	1	16	1	16	0	0	./.	2	4	2	7	5	39	5	39	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720771376	1	16979401	T	TAA	305	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16979401	16979409	2	10	472.471	-	-	7	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	20	15	0	0	./.	9	0	10	0	45	26	45	26	10	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720772133	1	18974486	TG	T	300	PASS	PAX7	CCDS44074.1	r.?	-	-	Del	intronic	D	18974486	18974489	1	12	263.688	-	-	2	1	1	PAX7|CCDS44074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAX7|CCDS44074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	2	3	4	3	23	16	23	16	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720773695	1	23503576	GT	G	360	PASS	-	-	-	-	-	Del	-	D	23503576	23503578	1	7	321.604	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	6	0	7	0	29	14	29	14	7	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720775832	1	29472723	AAACTCT	A	261	PASS	SFRS4	CCDS333.1	r.?	-	-	Del	downstream	D	29472723	29472736	6	10	483.309	-	-	2	1	1	SFRS4|CCDS333.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SFRS4|CCDS333.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	21	20	21	20	0	0	./.	9	0	10	0	33	22	33	22	10	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720775833	1	29472870	TGATCCCA	T	261	PASS	SFRS4	CCDS333.1	r.?	-	-	Del	downstream	D	29472870	29472881	7	10	483.309	-	-	1	1	1	SFRS4|CCDS333.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SFRS4|CCDS333.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	19	14	19	0	0	./.	9	0	10	0	35	27	35	27	10	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720777336	1	33751945	T	TC	300	PASS	ZNF362	CCDS377.1	r.?	-	-	Ins	intronic	I	33751945	33751948	1	12	265.494	-	-	2	1	1	ZNF362|CCDS377.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF362|CCDS377.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	9	0	0	./.	2	3	2	3	35	28	35	31	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720777404	1	33934388	TC	T	720	PASS	ZSCAN20	CCDS41300.1	r.?	-	-	Del	upstream	D	33934388	33934394	1	45	640.197	-	-	5	1	1	ZSCAN20|CCDS41300.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZSCAN20|CCDS41300.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	19	16	19	16	0	0	./.	8	4	9	8	28	32	28	32	9	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720777872	1	35529583	GC	G	360	PASS	ZMYM1	ENST00000417119	r.?	-	-	Del	intronic	D	35529583	35529587	1	12	322.206	-	-	3	1	1	ZMYM1|ENST00000417119|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZMYM1|ENST00000417119|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	1	5	2	6	27	46	27	46	2	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720779123	1	38833722	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	38833722	38833741	2	10	268.505	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	4	1	4	44	39	44	39	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720780467	1	41714477	CCA	C	720	PASS	-	-	-	-	-	Del	-	D	41714477	41714484	2	45	644.411	-	-	3	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	8	4	8	4	39	31	39	31	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720783719	1	51045739	CA	C	420	PASS	FAF1	CCDS554.1	r.?	-	-	Del	intronic	D	51045739	51045746	1	18	374.703	-	-	6	1	1	FAF1|CCDS554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAF1|CCDS554.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	17	5	17	0	0	./.	2	5	4	10	10	37	10	37	4	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720785464	1	55266040	CA	C	660	PASS	TTC22	CCDS44152.1	r.?	-	-	Del	intronic	D	55266040	55266045	1	36	588.302	-	-	4	1	1	TTC22|CCDS44152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC22|CCDS44152.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	23	27	23	0	0	./.	8	3	9	6	46	34	46	34	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720786553	1	58645479	TG	T	480	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	58645479	58645481	1	21	424.791	-	-	1	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	6	2	8	3	46	26	46	26	8	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720787705	1	61974502	T	TTA	269	PASS	-	-	-	-	-	Ins	-	I	61974502	61974515	2	10	262.484	-	-	6	1	-	-	-	./.	0	0	0	0	6	4	7	4	0	0	./.	4	1	6	2	27	16	27	16	6	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720789141	1	65007997	A	AT	480	PASS	CACHD1	CCDS628.2	r.?	-	-	Ins	intronic	I	65007997	65008007	1	24	422.383	-	-	9	1	1	CACHD1|CCDS628.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACHD1|CCDS628.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	15	0	0	./.	3	5	5	7	30	39	30	39	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720789356	1	65590812	CTGGATTCA	C	398	PASS	AC099680.1	ENST00000500320	r.?	-	-	Del	intronic	D	65590812	65590827	8	77	855.603	-	-	1	1	1	AC099680.1|ENST00000500320|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC099680.1|ENST00000500320|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	10	6	11	4	46	27	46	30	11	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720789848	1	67211497	AAT	A	960	PASS	SGIP1	CCDS30744.1	r.?	-	-	Del	downstream	D	67211497	67211501	2	72	859.215	-	-	1	1	1	SGIP1|CCDS30744.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SGIP1|ENST00000371038|r.5473_5474delAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	7	19	7	19	0	0	./.	5	11	10	16	30	41	30	41	10	16	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720794335	1	79914653	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	79914653	79914663	1	10	263.688	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	16	0	0	./.	1	4	1	4	27	32	27	32	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720797014	1	86953112	AGT	A	300	PASS	CLCA1	CCDS709.1	r.?	-	-	Del	intronic	D	86953112	86953118	2	10	268.505	-	-	2	1	1	CLCA1|CCDS709.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLCA1|CCDS709.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	1	4	1	4	28	29	28	29	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720798115	1	90462381	ATATAT	A	805	PASS	ZNF326	CCDS727.1	r.?	-	-	Del	intronic	D	90462381	90462390	5	77	856.205	-	-	1	1	1	ZNF326|CCDS727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF326|CCDS727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	10	6	14	8	52	35	52	35	14	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720800576	1	96493228	GA	G	480	PASS	-	-	-	-	-	Del	-	D	96493228	96493230	1	21	424.189	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	2	6	4	7	25	37	25	37	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720800846	1	97289889	GAT	G	900	PASS	-	-	-	-	-	Del	-	D	97289889	97289895	2	70	805.514	-	-	2	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	6	9	8	13	28	28	28	28	8	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720801435	1	99251792	AG	A	300	PASS	-	-	-	-	-	Del	-	D	99251792	99251795	1	6	268.505	-	-	2	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	5	0	5	1	32	22	32	22	5	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720808623	1	119764885	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	119764885	119764893	1	30	477.89	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	5	5	5	32	33	32	34	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720816788	1	157566168	CGTAGGCGAAGA	C	348	PASS	FCRL4	CCDS1166.1	r.?	-	-	Del	intronic	D	157566168	157566182	11	48	643.809	-	-	1	1	1	FCRL4|CCDS1166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FCRL4|CCDS1166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	5	7	5	8	39	23	39	23	5	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720816866	1	157861494	AT	A	600	PASS	-	-	-	-	-	Del	-	D	157861494	157861499	1	32	533.397	-	-	4	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	7	3	9	3	38	36	38	36	9	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720817095	1	158479166	GA	G	480	PASS	-	-	-	-	-	Del	-	D	158479166	158479170	1	25	429.608	-	-	3	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	4	5	5	36	32	36	32	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720817730	1	160293553	GC	G	660	PASS	COPA	CCDS1202.1	r.?	-	-	Del	intronic	D	160293553	160293556	1	36	590.71	-	-	2	1	1	COPA|CCDS1202.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COPA|CCDS1202.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	8	3	8	10	32	41	32	41	8	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720817866	1	160716568	GTCTTACATGATTATTCATAAGA	G	406	PASS	SLAMF7	CCDS1209.1	r.?	-	-	Del	intronic	D	160716568	160716591	22	64	751.813	-	-	1	1	1	SLAMF7|CCDS1209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLAMF7|CCDS1209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	7	7	6	5	26	22	27	25	7	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720821569	1	170245975	ATCTGATAGT	A	319	PASS	-	-	-	-	-	Del	-	D	170245975	170245989	9	40	588.904	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	7	4	9	5	45	26	45	26	9	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720825574	1	180820310	CAAACTTCTATTTAACTCATGAATTA	C	261	PASS	XPR1	CCDS1340.1	r.?	-	-	Del	intronic	D	180820310	180820338	25	30	483.309	-	-	1	1	1	XPR1|CCDS1340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XPR1|CCDS1340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	4	5	4	3	32	27	32	29	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720825906	1	181692568	TACTCATCAACAATTAATGCAGAAG	T	725	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181692568	181692596	24	176	1338.31	-	-	1	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	15	10	10	9	34	39	39	40	15	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720828623	1	189171542	GAGAT	G	1138	PASS	-	-	-	-	-	Del	-	D	189171542	189171549	4	120	1074.02	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	11	9	12	14	39	49	39	49	12	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720828939	1	190187695	A	AT	600	PASS	FAM5C	CCDS1373.1	r.?	-	-	Ins	intronic	I	190187695	190187703	1	32	529.785	-	-	7	1	1	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	20	13	20	0	0	./.	3	7	10	8	32	32	32	32	10	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720829110	1	190653028	TTATC	T	689	PASS	-	-	-	-	-	Del	-	D	190653028	190653036	4	40	643.207	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	9	4	12	22	32	22	32	4	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720829728	1	192461978	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	192461978	192461994	2	12	268.505	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	2	4	37	34	37	34	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720830047	1	193438783	AAC	A	269	PASS	-	-	-	-	-	Del	-	D	193438783	193438787	2	10	267.301	-	-	1	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	1	4	0	0	41	41	41	41	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720831971	1	198627699	TG	T	600	PASS	PTPRC	CCDS1397.1	r.?	-	-	Del	intronic	D	198627699	198627702	1	32	537.01	-	-	2	1	1	PTPRC|CCDS1397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRC|CCDS1397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	7	3	9	5	40	55	40	55	9	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720835754	1	208358093	TAC	T	329	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208358093	208358112	2	16	313.175	-	-	9	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	24	14	24	0	0	./.	3	3	3	2	30	34	30	34	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720835801	1	208533604	AGCCCAGGCTC	A	319	PASS	-	-	-	-	-	Del	-	D	208533604	208533618	10	40	590.108	-	-	1	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	4	7	4	7	33	37	33	37	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720835832	1	208627374	A	AT	449	PASS	-	-	-	-	-	Ins	-	I	208627374	208627381	1	25	424.791	-	-	6	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	4	4	7	5	50	36	52	36	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720835836	1	208628146	CAGAACAGGCT	C	261	PASS	-	-	-	-	-	Del	-	D	208628146	208628158	10	24	481.502	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	2	9	2	35	21	35	21	9	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720836481	1	210493418	TC	T	300	PASS	-	-	-	-	-	Del	-	D	210493418	210493420	1	6	260.076	-	-	1	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	5	0	9	0	49	35	49	35	9	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720839620	1	218286189	GAATTAAA	G	377	PASS	-	-	-	-	-	Del	-	D	218286189	218286200	7	44	696.908	-	-	1	1	1	-	-	./.	0	0	0	0	6	19	6	19	0	0	./.	3	10	4	13	31	42	31	42	4	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720840695	1	220825002	AAAAATGACTCCAGTCAT	A	290	PASS	MARK1	CCDS31029.2	r.?	-	-	Del	intronic	D	220825002	220825022	17	36	537.009	-	-	1	1	1	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARK1|CCDS31029.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	5	5	5	5	41	40	41	40	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720840968	1	221573849	GAAACAAA	G	261	PASS	-	-	-	-	-	Del	-	D	221573849	221573857	7	24	483.309	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	7	2	7	2	36	44	36	44	7	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720843083	1	226519670	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	226519670	226519680	1	6	264.892	-	-	9	1	1	-	-	./.	0	0	0	0	13	14	14	14	0	0	./.	0	5	0	8	42	57	43	58	0	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720844380	1	229525762	TGGTCC	T	1167	PASS	-	-	-	-	-	Del	-	D	229525762	229525769	5	130	1125.91	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	12	9	13	10	38	25	38	25	13	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720849344	1	240586746	TG	T	569	PASS	FMN2	CCDS31069.2	r.?	-	-	Del	intronic	D	240586746	240586748	1	27	537.01	-	-	1	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	8	2	9	4	49	40	49	40	9	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720857328	10	8105044	TTTTG	T	269	PASS	GATA3	CCDS31143.1	r.?	-	-	Del	intronic	D	8105044	8105058	4	10	265.341	-	-	3	1	1	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GATA3|CCDS31143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	1	4	3	7	35	47	35	47	3	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720858169	10	9894628	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	9894628	9894635	1	15	319.854	-	-	6	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	2	4	5	5	27	44	27	44	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720859304	10	12474045	TG	T	360	PASS	CAMK1D	CCDS7091.1	r.?	-	-	Del	intronic	D	12474045	12474048	1	16	322.262	-	-	2	1	1	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	3	4	5	22	34	22	34	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720859440	10	12766272	GT	G	720	PASS	CAMK1D	CCDS7091.1	r.?	-	-	Del	intronic	D	12766272	12766278	1	49	645.728	-	-	5	1	1	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	6	6	9	8	33	35	33	35	9	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720861493	10	17171192	GT	G	660	PASS	CUBN	CCDS7113.1	r.245delA	c.179delA	p.N60fs*14	Del	frameshift	D	17171192	17171197	1	40	591.817	-	-	4	1	1	CUBN|CCDS7113.1|r.245delA|c.179delA|p.N60fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CUBN|CCDS7113.1|r.245delA|c.179delA|p.N60fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	10	17	10	0	0	./.	7	4	7	5	38	28	38	28	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720864102	10	24250844	CTG	C	540	PASS	KIAA1217	CCDS41496.1	r.?	-	-	Del	intronic	D	24250844	24250850	2	30	485.199	-	-	2	1	1	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS41496.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	5	4	6	5	28	44	28	44	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720867693	10	31805663	CT	C	360	PASS	ZEB1	CCDS44370.1	r.?	-	-	Del	intronic	D	31805663	31805670	1	16	323.466	-	-	6	1	1	ZEB1|CCDS44370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZEB1|CCDS44370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	3	3	3	24	23	24	23	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720870782	10	39105542	A	ATCCATTCCATTCAATTCCATTGAATTCCATTCCATTCCATTCAATTCCATTGAATTCCAT	290	PASS	-	-	-	-	-	Ins	-	I	39105542	39105584	60	32	177.874	-	-	0	1	1	-	-	./.	0	0	0	0	34	48	34	48	0	0	./.	3	7	0	0	71	114	71	117	3	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720874915	10	52521426	G	GACAA	252	PASS	ASAH2B	ENST00000374007	r.?	-	-	Ins	downstream	I	52521426	52521430	4	10	459.31	-	-	0	1	1	ASAH2B|ENST00000374007|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ASAH2B|ENST00000374007|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	16	11	16	0	0	./.	9	0	9	0	45	27	45	27	9	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720883974	10	75533271	TGAG	T	360	PASS	FUT11	CCDS7333.1	r.1076_1078delGAG	c.1033_1035delGAG	p.E346delE	Del	inframe	D	75533271	75533278	3	15	323.466	-	-	2	1	1	FUT11|CCDS7333.1|r.1076_1078delGAG|c.1033_1035delGAG|p.E346delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	FUT11|CCDS7333.1|r.1076_1078delGAG|c.1033_1035delGAG|p.E346delE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	20	20	20	20	0	0	./.	4	2	5	2	30	17	30	17	5	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720884851	10	78204824	TG	T	300	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	78204824	78204827	1	10	266.545	-	-	2	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	8	25	8	0	0	./.	4	1	6	1	35	7	35	7	6	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720891498	10	98322078	GAAGCC	G	329	PASS	TM9SF3	CCDS7450.1	r.?	-	-	Del	intronic	D	98322078	98322088	5	15	322.864	-	-	1	1	1	TM9SF3|CCDS7450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TM9SF3|CCDS7450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	2	4	3	6	25	28	25	28	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720891764	10	99071296	AG	A	300	PASS	-	-	-	-	-	Del	-	D	99071296	99071299	1	12	267.147	-	-	2	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	2	3	2	4	33	32	33	32	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720892201	10	100432609	G	GA	300	PASS	HPSE2	CCDS7477.1	r.?	-	-	Ins	intronic	I	100432609	100432619	1	10	266.545	-	-	9	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	23	12	23	0	0	./.	4	1	4	1	35	31	36	31	4	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720894012	10	105243916	TC	T	329	PASS	CALHM3	CCDS44476.1	r.?	-	-	Del	upstream	D	105243916	105243920	1	15	323.466	-	-	3	1	1	CALHM3|CCDS44476.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CALHM3|CCDS44476.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	20	7	20	7	0	0	./.	4	2	6	2	26	20	26	20	6	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720896799	10	114863050	TC	T	900	PASS	TCF7L2	CCDS7576.1	r.?	-	-	Del	intronic	D	114863050	114863053	1	70	804.451	-	-	2	1	1	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	6	9	9	14	21	28	21	28	9	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720898377	10	120480765	TTTAA	TG	658	PASS	C10orf46	CCDS41570.1	r.?	-	-	Complex	intronic	DI	120480766	120480769	4	48	0	-	-	0	1	1	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	7	5	0	0	28	20	28	20	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720901358	10	129370243	ACATAT	A	269	PASS	-	-	-	-	-	Del	-	D	129370243	129370249	5	12	269.555	-	-	1	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	3	2	3	3	22	19	22	19	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720902162	10	132325279	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	132325279	132325286	1	12	319.854	-	-	6	1	1	-	-	./.	0	0	0	0	18	14	18	15	0	0	./.	5	1	6	3	27	22	27	22	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720904387	11	4071293	TC	T	569	PASS	STIM1	CCDS7749.1	r.?	-	-	Del	intronic	D	4071293	4071297	1	32	540.166	-	-	3	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	15	30	15	0	0	./.	3	7	5	9	26	23	26	23	5	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720904388	11	4071976	TG	T	780	PASS	STIM1	CCDS7749.1	r.?	-	-	Del	intronic	D	4071976	4071978	1	50	702.216	-	-	1	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	4	9	5	14	18	35	18	35	5	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720904389	11	4072322	G	GA	480	PASS	STIM1	CCDS7749.1	r.?	-	-	Ins	intronic	I	4072322	4072332	1	21	427.316	-	-	9	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	2	6	7	24	20	24	20	6	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720909014	11	16593155	TTTTG	T	1349	PASS	-	-	-	-	-	Del	-	D	16593155	16593184	4	136	1235.16	-	-	7	1	-	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	16	8	17	29	43	29	43	9	17	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720912620	11	25913836	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	25913836	25913845	1	12	267.073	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	2	3	6	5	27	21	27	21	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720913754	11	29070834	TGCAGA	T	556	PASS	-	-	-	-	-	Del	-	D	29070834	29070841	5	56	701.614	-	-	1	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	7	6	7	6	41	25	41	25	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720915000	11	32962396	CT	C	720	PASS	QSER1	CCDS41631.1	r.?	-	-	Del	intronic	D	32962396	32962402	1	45	646.393	-	-	5	1	1	QSER1|CCDS41631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	QSER1|CCDS41631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	1	24	1	24	0	0	./.	4	8	7	12	23	34	23	34	7	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720915660	11	34521124	CAGAATGCAAAATTTGCAGG	C	261	PASS	ELF5	CCDS7892.1	r.?	-	-	Del	intronic	D	34521124	34521144	19	30	484.945	-	-	1	1	1	ELF5|CCDS7892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELF5|CCDS7892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	5	4	5	4	40	22	40	22	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720917693	11	40188235	TGCA	T	449	PASS	LRRC4C	CCDS31464.1	r.?	-	-	Del	intronic	D	40188235	40188241	3	16	432.133	-	-	1	1	1	LRRC4C|CCDS31464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRRC4C|CCDS31464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	1	7	2	9	32	30	32	30	2	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720917961	11	40926295	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	40926295	40926310	2	12	270.083	-	-	7	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	2	3	28	32	28	32	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720921839	11	55436379	TAG	T	900	PASS	OR4C6	CCDS31506.1	r.?	-	-	Del	downstream	D	55436379	55436382	2	66	810.249	-	-	1	1	1	OR4C6|CCDS31506.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR4C6|CCDS31506.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	19	17	19	0	0	./.	5	10	6	13	23	42	23	42	6	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720922472	11	57496795	G	GT	300	PASS	TMX2	CCDS7967.1	r.?	-	-	Ins	intronic	I	57496795	57496805	1	12	261.654	-	-	9	1	1	TMX2|CCDS7967.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMX2|CCDS7967.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	4	3	43	39	43	39	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720922912	11	58745721	AATTTTTTCATC	A	348	PASS	-	-	-	-	-	Del	-	D	58745721	58745739	11	48	648.199	-	-	1	1	1	-	-	./.	0	0	0	0	22	7	22	7	0	0	./.	7	5	13	5	36	39	36	39	13	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720923882	11	61818653	G	GT	1380	PASS	-	-	-	-	-	Ins	-	I	61818653	61818655	1	156	1228.53	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	11	12	12	13	26	36	26	36	12	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720927423	11	71438675	TCAA	T	417	PASS	-	-	-	-	-	Del	-	D	71438675	71438683	3	24	432.133	-	-	2	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	5	3	5	3	34	25	34	25	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720929162	11	77009143	GT	G	300	PASS	-	-	-	-	-	Del	-	D	77009143	77009151	1	12	270.083	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	4	2	35	23	35	23	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720929225	11	77170071	TA	T	360	PASS	PAK1	CCDS44687.1	r.?	-	-	Del	intronic	D	77170071	77170076	1	15	316.273	-	-	4	1	1	PAK1|CCDS44687.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAK1|CCDS44687.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	17	25	17	0	0	./.	2	4	2	6	26	26	26	26	2	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720929820	11	79323276	CA	C	300	PASS	-	-	-	-	-	Del	-	D	79323276	79323280	1	12	270.083	-	-	3	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	3	2	4	3	23	20	23	20	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720930120	11	80569748	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	80569748	80569750	1	15	319.885	-	-	1	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	4	2	4	5	27	20	27	20	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720931106	11	83427112	AATGCCCACC	A	290	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	83427112	83427127	9	36	540.166	-	-	1	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	5	5	6	5	28	23	28	23	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720932690	11	88351188	CAACTTTTGAGAACTCAACTATGGGATGGAACAATG	CAGAGTCTTT	377	PASS	GRM5	CCDS44694.1	r.?	-	-	Complex	intronic	DI	88351189	88351223	35	56	0	-	-	0	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	25	23	25	23	0	0	./.	7	6	0	0	30	24	33	26	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720933537	11	90833572	AT	A	269	PASS	-	-	-	-	-	Del	-	D	90833572	90833576	1	12	259.848	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	2	3	1	30	27	30	28	3	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720934312	11	93318040	CTTT	C	269	PASS	-	-	-	-	-	Del	-	D	93318040	93318048	3	12	270.083	-	-	7	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	4	4	22	34	22	34	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720939078	11	107355486	TA	T	420	PASS	-	-	-	-	-	Del	-	D	107355486	107355490	1	18	376.31	-	-	3	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	2	5	4	6	34	27	34	27	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720940998	11	113194110	GGAGGAT	G	435	PASS	TTC12	CCDS8360.2	r.211_216delGAGGAU	c.160_165delGAGGAT	p.D55_E56delDE	Del	inframe	D	113194110	113194119	6	66	810.249	-	-	1	1	1	TTC12|CCDS8360.2|r.211_216delGAGGAU|c.160_165delGAGGAT|p.D55_E56delDE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	TTC12|CCDS8360.2|r.211_216delGAGGAU|c.160_165delGAGGAT|p.D55_E56delDE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	8	8	8	8	0	0	./.	5	10	5	13	16	32	17	32	6	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720943605	11	121289968	AC	A	420	PASS	-	-	-	-	-	Del	-	D	121289968	121289970	1	20	378.116	-	-	1	1	1	-	-	./.	0	0	0	0	12	25	12	25	0	0	./.	4	3	6	3	29	33	29	33	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720944720	11	124338000	CCCTT	CA	358	PASS	-	-	-	-	-	Complex	-	DI	124338001	124338004	4	20	0	-	-	0	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	3	4	0	0	26	32	26	32	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720951433	12	9195105	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	9195105	9195108	1	45	640.658	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	8	4	11	6	34	46	35	46	11	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720953927	12	16050801	TAA	T	358	PASS	STRAP	CCDS8676.1	r.?	-	-	Del	intronic	D	16050801	16050805	2	20	377.932	-	-	3	1	1	STRAP|CCDS8676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STRAP|CCDS8676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	3	4	4	13	18	13	18	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720959358	12	30387641	ACTTAAAAAAGATTAAGT	A	290	PASS	-	-	-	-	-	Del	-	D	30387641	30387663	17	32	539.902	-	-	1	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	7	3	6	3	43	43	44	43	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720960914	12	33517789	TCTAATTATC	T	406	PASS	-	-	-	-	-	Del	-	D	33517789	33517802	9	55	755.863	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	4	10	4	11	33	29	33	29	4	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720963261	12	43223364	A	AT	457	PASS	-	-	-	-	-	Ins	-	I	43223364	43223372	1	25	427.105	-	-	7	1	1	-	-	./.	0	0	0	0	19	17	20	17	0	0	./.	4	4	6	5	40	35	40	35	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720964169	12	46242435	GTTAATCTATTGAT	G	319	PASS	ARID2	CCDS31783.1	r.?	-	-	Del	intronic	D	46242435	46242457	13	30	593.291	-	-	1	1	1	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID2|CCDS31783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	23	22	23	0	0	./.	2	9	3	9	28	39	28	39	3	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720964683	12	47790748	TGCATGAGGGCTCTGCCTCCATGACCAAGTACTTCCCACAG	T	261	PASS	-	-	-	-	-	Del	-	D	47790748	47790791	40	28	484.106	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	6	2	3	26	27	27	30	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720965210	12	49153507	AG	A	300	PASS	-	-	-	-	-	Del	-	D	49153507	49153509	1	12	262.124	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	3	3	4	31	39	31	39	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720966958	12	53565428	GC	G	360	PASS	CSAD	CCDS8848.2	r.?	-	-	Del	intronic	D	53565428	53565434	1	15	311.298	-	-	5	1	1	CSAD|CCDS8848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSAD|CCDS8848.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	2	4	3	7	24	35	24	35	3	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720970306	12	63091596	AATATG	A	863	PASS	PPM1H	CCDS44934.1	r.?	-	-	Del	intronic	D	63091596	63091603	5	84	971.222	-	-	1	1	1	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	5	13	6	17	33	42	33	42	6	17	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720970333	12	63151532	C	CG	1140	PASS	PPM1H	CCDS44934.1	r.?	-	-	Ins	intronic	I	63151532	63151533	1	80	1011.97	-	-	0	1	1	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPM1H|CCDS44934.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	4	15	5	18	35	48	36	48	5	18	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720971257	12	65439089	TACTGAATCCTTTC	T	464	PASS	-	-	-	-	-	Del	-	D	65439089	65439105	13	56	863.844	-	-	1	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	3	13	3	13	29	44	29	44	3	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720974540	12	74767152	GCCTTACTGTCCCTAAGAGTCTGGCATACTGTCTCCAAGCCCCTCCAAATATTCAGATACTAA	G	406	PASS	-	-	-	-	-	Del	-	D	74767152	74767218	62	63	755.863	-	-	1	1	1	-	-	./.	0	0	0	0	26	19	26	19	0	0	./.	8	6	0	0	31	29	39	35	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720975026	12	76107225	AT	A	780	PASS	-	-	-	-	-	Del	-	D	76107225	76107229	1	56	701.873	-	-	3	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	7	6	7	6	34	35	36	36	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720975647	12	77755488	CT	C	720	PASS	-	-	-	-	-	Del	-	D	77755488	77755493	1	40	647.883	-	-	4	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	9	3	13	8	36	39	36	39	13	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720977002	12	81779589	TTAA	T	360	PASS	PPFIA2	ENST00000443686	r.?	-	-	Del	intronic	D	81779589	81779599	3	15	323.941	-	-	3	1	1	PPFIA2|ENST00000443686|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPFIA2|ENST00000443686|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	2	4	3	5	31	43	31	43	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720978371	12	85666054	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	85666054	85666061	1	63	746.832	-	-	6	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	6	8	7	8	51	41	52	42	7	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720978393	12	85756247	C	CA	1440	PASS	-	-	-	-	-	Ins	-	I	85756247	85756256	1	168	1265.66	-	-	8	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	11	13	16	15	49	49	49	49	16	15	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720978569	12	86256822	GTGATATCCCATTTATCATTTTTTAATGTGTCTGTT	G	348	PASS	-	-	-	-	-	Del	-	D	86256822	86256862	35	48	647.883	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	7	5	6	3	37	34	38	36	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720979102	12	87785650	AT	A	658	PASS	-	-	-	-	-	Del	-	D	87785650	87785652	1	33	646.679	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	10	2	12	18	47	18	47	2	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720982020	12	95697002	C	CA	300	PASS	VEZT	CCDS44954.1	r.?	-	-	Ins	downstream	I	95697002	95697012	1	12	257.91	-	-	9	1	1	VEZT|CCDS44954.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	VEZT|CCDS44954.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	19	17	19	17	0	0	./.	2	3	2	3	39	41	39	41	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720983258	12	98720538	TGA	T	360	PASS	-	-	-	-	-	Del	-	D	98720538	98720557	2	12	322.737	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	1	5	2	6	34	42	34	42	2	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720983527	12	99369565	TGA	T	300	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99369565	99369581	2	6	269.951	-	-	7	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	0	5	0	5	27	24	27	24	0	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720988056	12	111603434	TG	T	420	PASS	CUX2	CCDS41837.1	r.?	-	-	Del	intronic	D	111603434	111603440	1	20	377.932	-	-	5	1	1	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	3	4	3	5	38	31	38	31	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720988632	12	113360517	ACATATCCACTCCTCTT	A	290	PASS	OAS1	CCDS41838.1	r.?	-	-	Del	downstream	D	113360517	113360536	16	27	539.902	-	-	1	1	1	OAS1|CCDS41838.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OAS1|ENST00000377508|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	8	2	7	26	32	26	33	2	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720996631	12	131574660	TCAGTGA	T	435	PASS	GPR133	CCDS9272.1	r.?	-	-	Del	intronic	D	131574660	131574669	6	52	805.639	-	-	1	1	1	GPR133|CCDS9272.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR133|CCDS9272.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	3	12	5	13	28	34	28	34	5	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2720998254	13	20514220	CTAAG	C	420	PASS	-	-	-	-	-	Del	-	D	20514220	20514227	4	8	379.223	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	7	0	9	3	27	26	27	26	9	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721001612	13	28657007	C	CT	268	PASS	FLT3	CCDS31953.1	r.?	-	-	Ins	intronic	I	28657007	28657017	1	12	306.385	-	-	9	1	1	FLT3|CCDS31953.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FLT3|CCDS31953.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	11	24	0	0	./.	5	1	6	10	22	28	22	31	6	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721002537	13	31040184	CG	C	420	PASS	HMGB1	CCDS9335.1	r.?	-	-	Del	intronic	D	31040184	31040189	1	20	373.805	-	-	4	1	1	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HMGB1|CCDS9335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	4	3	5	5	11	17	11	17	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721009152	13	51180226	AG	A	480	PASS	-	-	-	-	-	Del	-	D	51180226	51180233	1	21	433.398	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	2	9	2	25	15	25	15	9	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721011407	13	58956068	AT	A	300	PASS	-	-	-	-	-	Del	-	D	58956068	58956078	1	12	270.874	-	-	9	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	3	2	4	4	14	8	14	8	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721014247	13	66102589	CT	C	720	PASS	-	-	-	-	-	Del	-	D	66102589	66102592	1	33	650.097	-	-	2	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	10	2	11	2	30	23	30	23	11	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721019699	13	82530352	CCCTGAGAAACTCAAATA	C	261	PASS	-	-	-	-	-	Del	-	D	82530352	82530372	17	24	487.573	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	7	2	7	24	36	24	36	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721020482	13	84991633	AAAGGGTGTGACC	A	290	PASS	-	-	-	-	-	Del	-	D	84991633	84991648	12	35	541.145	-	-	1	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	6	4	6	5	27	34	27	34	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721023897	13	94576742	GA	G	420	PASS	GPC6	CCDS9469.1	r.?	-	-	Del	intronic	D	94576742	94576750	1	18	379.223	-	-	7	1	1	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC6|CCDS9469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	5	2	6	29	24	29	24	2	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721024092	13	95168201	CAGAGAGAACATATGCAGAAA	C	377	PASS	-	-	-	-	-	Del	-	D	95168201	95168224	20	56	700.659	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	7	6	7	6	41	25	41	25	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721024939	13	97200557	CTCAGAGACA	C	377	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Del	intronic	D	97200557	97200569	9	56	704.272	-	-	1	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	7	6	10	6	31	23	31	23	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721026980	13	102414819	CCTT	C	298	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102414819	102414825	3	15	325.048	-	-	1	1	1	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	2	4	3	4	29	23	29	23	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721027981	13	105233483	TATCTGGAACTTTCCTTTTTTGAAATCCAACTTTGCCTTGACCACTGAAGCTGGGTTTAGCTCTCCCTCCCTCATAATTTCCACGGTGCTTATCTGTTTGCATTTAACACTTGCATGGAGACTTTAGGATTCCAACCCTCATGCATATCTGACCTCCCAGACTTGAGTTTAATATTTGAAGATACTTAATCCAGTTTGTTAACTACTTTCACTAGCATCACCTCCAGGCTCTAGACTCTCTGACAATCTGTTCATTTGTTTTTTTGTCTTCCTATTCTGGAGTGAAATTTTCATAAACATAACGAGGTATTGGTTATAGTTGCTGCTAG	T	696	PASS	-	-	-	-	-	Del	-	D	105233483	105233816	328	165	1294.78	-	-	1	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	10	14	0	0	20	11	30	25	10	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721028279	13	106096497	CTTAAATA	C	609	PASS	-	-	-	-	-	Del	-	D	106096497	106096507	7	130	1137.67	-	-	1	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	9	12	12	16	26	30	26	30	12	16	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721029730	13	109925188	TCAGTCA	T	261	PASS	-	-	-	-	-	Del	-	D	109925188	109925195	6	28	486.971	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	6	3	7	3	35	31	35	31	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721029970	13	110691917	C	CT	254	PASS	-	-	-	-	-	Ins	-	I	110691917	110691927	1	10	267.863	-	-	9	1	1	-	-	./.	0	0	0	0	23	18	24	18	0	0	./.	1	4	1	4	34	33	34	33	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721030876	13	113945771	TCA	T	294	PASS	-	-	-	-	-	Del	-	D	113945771	113945776	2	12	270.874	-	-	2	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	3	2	3	3	18	26	18	26	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721034653	14	27569972	CTT	C	600	PASS	-	-	-	-	-	Del	-	D	27569972	27569982	2	32	541.984	-	-	9	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	7	3	9	3	25	21	25	21	9	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721034793	14	27990553	ATCTTGTGGGATTTC	A	435	PASS	-	-	-	-	-	Del	-	D	27990553	27990570	14	60	812.976	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	11	4	12	5	35	30	35	30	12	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721035015	14	28514082	ATCAGGGTTTACTTTT	A	261	PASS	-	-	-	-	-	Del	-	D	28514082	28514100	15	28	487.785	-	-	1	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	6	3	6	3	38	31	38	31	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721035425	14	29889070	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	29889070	29889080	1	10	267.982	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	1	4	2	4	41	45	41	46	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721035906	14	31383413	CTA	C	900	PASS	STRN3	CCDS41938.1	r.?	-	-	Del	intronic	D	31383413	31383419	2	66	811.771	-	-	2	1	1	STRN3|CCDS41938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STRN3|CCDS41938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	10	5	12	8	33	33	33	33	12	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721036983	14	33813917	AT	A	1740	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	33813917	33813921	1	210	1571.75	-	-	3	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	20	9	23	14	54	48	54	48	23	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721039450	14	39680619	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	39680619	39680629	1	10	267.982	-	-	9	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	1	4	2	5	35	47	35	48	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721040480	14	42197072	TA	T	300	PASS	LRFN5	CCDS9678.1	r.?	-	-	Del	intronic	D	42197072	42197074	1	12	270.992	-	-	1	1	1	LRFN5|CCDS9678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LRFN5|CCDS9678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	3	11	3	0	0	./.	3	2	5	2	39	19	39	19	5	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721041584	14	45545873	AAAATGTT	A	290	PASS	FAM179B	CCDS9681.1	r.?	-	-	Del	downstream	D	45545873	45545886	7	27	541.984	-	-	1	1	1	FAM179B|CCDS9681.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAM179B|CCDS9681.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	2	8	2	9	33	52	33	52	2	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721042236	14	47374570	A	AT	300	PASS	MDGA2	CCDS41948.1	r.?	-	-	Ins	intronic	I	47374570	47374580	1	12	267.982	-	-	9	1	1	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	2	3	2	3	47	36	48	36	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721046908	14	58750694	CA	C	1620	PASS	-	-	-	-	-	Del	-	D	58750694	58750700	1	180	1462.75	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	19	8	22	12	55	31	55	31	22	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721047341	14	59805426	C	CT	300	PASS	DAAM1	CCDS9737.1	r.?	-	-	Ins	intronic	I	59805426	59805436	1	12	263.165	-	-	9	1	1	DAAM1|CCDS9737.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAAM1|CCDS9737.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	3	2	3	2	45	35	46	35	3	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721047513	14	60416003	G	GT	261	PASS	-	-	-	-	-	Ins	-	I	60416003	60416006	1	10	482.367	-	-	2	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	9	0	10	0	59	36	59	36	10	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721052230	14	74207014	CATCAGCACAAGTGT	C	261	PASS	C14orf43	CCDS9819.1	r.?	-	-	Del	intronic	D	74207014	74207030	14	30	487.183	-	-	1	1	1	C14orf43|CCDS9819.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C14orf43|CCDS9819.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	5	4	5	5	15	17	15	17	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721055734	14	86717844	AT	A	540	PASS	-	-	-	-	-	Del	-	D	86717844	86717848	1	30	487.183	-	-	3	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	4	7	4	15	13	15	13	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721060154	14	102415610	GGCCTCCAAAAAAAACAACTTCC	G	261	PASS	-	-	-	-	-	Del	-	D	102415610	102415639	22	28	487.785	-	-	1	1	1	-	-	./.	0	0	0	0	19	26	19	26	0	0	./.	3	6	3	6	24	41	24	41	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721062444	15	20109538	CT	C	264	PASS	-	-	-	-	-	Del	-	D	20109538	20109545	1	11	542.174	-	-	6	1	1	-	-	./.	0	0	0	0	31	96	31	96	0	0	./.	0	10	2	14	83	230	83	230	2	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721064320	15	24203087	TAC	T	660	PASS	-	-	-	-	-	Del	-	D	24203087	24203091	2	40	593.984	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	7	4	8	5	31	36	31	36	8	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721065213	15	26782107	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	26782107	26782109	1	24	427.117	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	16	0	0	./.	3	5	3	6	27	37	27	37	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721065710	15	28075423	GA	G	960	PASS	OCA2	CCDS10020.1	r.?	-	-	Del	intronic	D	28075423	28075425	1	45	866.275	-	-	1	1	1	OCA2|CCDS10020.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OCA2|CCDS10020.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	2	14	4	17	17	34	17	34	4	17	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721068145	15	35051542	AAATT	A	478	PASS	GJD2	CCDS10040.1	r.?	-	-	Del	upstream	D	35051542	35051549	4	24	487.957	-	-	1	1	1	GJD2|CCDS10040.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AC087457.1|ENST00000503496|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	7	2	8	3	40	28	40	28	8	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721072054	15	45832488	A	AT	540	PASS	C15orf21	ENST00000409454	r.?	-	-	Ins	intronic	I	45832488	45832498	1	18	478.324	-	-	9	1	1	C15orf21|ENST00000409454|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C15orf21|ENST00000409454|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	8	1	9	3	32	16	33	16	9	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721072678	15	47455255	AGTGTTTTT	A	348	PASS	-	-	-	-	-	Del	-	D	47455255	47455266	8	49	650.007	-	-	1	1	1	-	-	./.	0	0	0	0	15	26	15	26	0	0	./.	6	6	8	8	42	32	42	32	8	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721073388	15	49917564	TCTA	T	658	PASS	DTWD1	CCDS10132.1	r.434_436delCUA	c.201_203delCTA	p.Y68delY	Del	inframe	D	49917564	49917570	3	48	650.609	-	-	1	1	1	DTWD1|CCDS10132.1|r.434_436delCUA|c.201_203delCTA|p.Y68delY|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	DTWD1|CCDS10132.1|r.434_436delCUA|c.201_203delCTA|p.Y68delY|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	10	16	10	16	0	0	./.	7	5	7	6	21	38	21	38	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721074928	15	53791692	GGTTTT	G	267	PASS	-	-	-	-	-	Del	-	D	53791692	53791701	5	15	324.1	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	5	4	37	28	37	28	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721075355	15	54955029	TTATTG	T	387	PASS	-	-	-	-	-	Del	-	D	54955029	54955038	5	24	433.74	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	3	5	5	37	27	37	27	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721077537	15	60558643	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	60558643	60558653	1	16	320.488	-	-	9	1	1	-	-	./.	0	0	0	0	23	9	23	9	0	0	./.	3	3	3	3	31	39	33	39	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721080518	15	67780289	AG	A	360	PASS	IQCH	CCDS32273.1	r.?	-	-	Del	intronic	D	67780289	67780292	1	12	320.488	-	-	2	1	1	IQCH|CCDS32273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCH|CCDS32273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	5	1	6	2	36	39	36	39	6	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721082404	15	73222467	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	73222467	73222472	1	64	750.013	-	-	4	1	1	-	-	./.	0	0	0	0	30	15	30	15	0	0	./.	7	7	7	9	41	34	41	34	7	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721082887	15	74998611	TG	T	297	PASS	-	-	-	-	-	Del	-	D	74998611	74998613	1	12	266.873	-	-	1	1	1	-	-	./.	0	0	0	0	30	14	30	14	0	0	./.	3	2	5	3	39	30	39	30	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721086773	15	87983641	AT	A	360	PASS	-	-	-	-	-	Del	-	D	87983641	87983649	1	15	325.305	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	2	6	3	28	12	28	12	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721087073	15	89275897	ATTCCACCATGAGTTAAATGCTCTTACAT	A	261	PASS	-	-	-	-	-	Del	-	D	89275897	89275928	28	28	487.957	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	3	4	3	40	23	42	23	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721089296	15	95088621	ACTGTTTGCTTATTGG	A	580	PASS	-	-	-	-	-	Del	-	D	95088621	95088641	15	121	1082.54	-	-	1	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	10	10	11	10	24	33	25	33	12	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721090326	15	98156144	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	98156144	98156154	1	24	477.12	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	7	4	7	31	38	31	38	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721092037	16	209405	T	TG	269	PASS	HBZ	CCDS10397.1	r.?	-	-	Ins	downstream	I	209405	209412	1	12	267.076	-	-	6	1	1	HBZ|CCDS10397.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HBZ|CCDS10397.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	10	19	10	0	0	./.	3	2	3	3	36	36	37	38	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721092578	16	1411644	C	CA	300	PASS	UNKL	CCDS10437.2	r.?	-	-	Ins	downstream	I	1411644	1411654	1	10	266.474	-	-	9	1	1	UNKL|CCDS10437.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GNPTG|CCDS10436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	1	4	1	4	34	46	34	46	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721093665	16	3759248	AG	A	300	PASS	TRAP1	CCDS10508.1	r.?	-	-	Del	intronic	D	3759248	3759250	1	6	265.27	-	-	1	1	-	TRAP1|CCDS10508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAP1|CCDS10508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	5	0	9	0	55	24	55	24	9	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721094171	16	4610546	CA	C	329	PASS	ENSG00000205832	ENST00000444310	r.?	-	-	Del	intronic	D	4610546	4610555	1	16	322.418	-	-	8	1	1	ENSG00000205832|ENST00000444310|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000205832|ENST00000444310|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	3	4	50	49	50	49	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721101331	16	19020474	CTT	C	420	PASS	TMC7	CCDS10573.1	r.?	-	-	Del	intronic	D	19020474	19020478	2	18	378.362	-	-	3	1	1	TMC7|CCDS10573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMC7|CCDS10573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	5	2	7	3	52	43	52	43	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721103764	16	24665113	AG	A	300	PASS	-	-	-	-	-	Del	-	D	24665113	24665115	1	6	263.464	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	0	8	0	51	29	51	29	8	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721106765	16	31799631	CT	C	1320	PASS	-	-	-	-	-	Del	-	D	31799631	31799635	1	108	1191.03	-	-	3	1	1	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	5	17	9	22	34	49	34	49	9	22	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721109582	16	34660941	TGATA	T	267	PASS	-	-	-	-	-	Del	-	D	34660941	34660949	4	16	324.826	-	-	1	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	3	3	5	3	29	35	29	35	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721110557	16	46836598	G	GT	300	PASS	C16orf87	CCDS10724.1	r.838_839insa	c.?	p.?	Ins	3'UTR variant	I	46836598	46836608	1	12	267.076	-	-	9	1	1	C16orf87|CCDS10724.1|r.838_839insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	C16orf87|CCDS10724.1|r.838_839insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	2	3	29	34	30	34	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721114948	16	61143279	CA	C	718	PASS	-	-	-	-	-	Del	-	D	61143279	61143285	1	54	702.586	-	-	5	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	8	5	16	9	34	19	34	19	16	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721115356	16	62819291	TTTA	T	389	PASS	-	-	-	-	-	Del	-	D	62819291	62819300	3	20	378.964	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	4	5	18	19	18	19	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721127114	17	8555467	GCGCGATCTCA	G	435	PASS	-	-	-	-	-	Del	-	D	8555467	8555478	10	72	811.633	-	-	1	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	8	7	8	8	28	16	28	16	8	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721128927	17	12915290	TG	T	420	PASS	ELAC2	CCDS11164.1	r.?	-	-	Del	intronic	D	12915290	12915292	1	20	374.828	-	-	1	1	1	ELAC2|CCDS11164.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELAC2|CCDS11164.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	4	3	4	3	23	21	23	21	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721130734	17	17292126	TC	T	420	PASS	-	-	-	-	-	Del	-	D	17292126	17292130	1	18	379.043	-	-	3	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	5	2	8	2	28	22	28	22	8	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721133697	17	25819970	CT	C	300	PASS	KSR1	ENST00000319524	r.?	-	-	Del	intronic	D	25819970	25819976	1	12	270.143	-	-	5	1	1	KSR1|ENST00000319524|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KSR1|ENST00000319524|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	2	3	2	5	28	26	28	26	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721134852	17	29163150	A	AT	300	PASS	ATAD5	CCDS11260.1	r.?	-	-	Ins	intronic	I	29163150	29163160	1	10	262.316	-	-	9	1	1	ATAD5|CCDS11260.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATAD5|CCDS11260.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	25	11	25	0	0	./.	1	4	1	2	25	49	25	50	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721136471	17	33811081	TC	T	1260	PASS	SLFN12L	CCDS45649.1	r.?	-	-	Del	intronic	D	33811081	33811083	1	132	1135.32	-	-	1	1	1	SLFN12L|CCDS45649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLFN12L|CCDS45649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	11	10	11	10	33	30	33	30	11	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721139688	17	41708013	TTGAGCC	TCCAA	536	PASS	-	-	-	-	-	Complex	-	DI	41708014	41708019	6	42	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	6	5	0	0	32	18	32	18	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721142144	17	47026711	TA	T	360	PASS	SNF8	ENST00000502492	r.?	-	-	Del	upstream	D	47026711	47026713	1	7	318.271	-	-	1	1	1	SNF8|ENST00000502492|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SNF8|ENST00000502492|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	9	10	9	0	0	./.	6	0	11	0	31	39	31	39	11	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721143615	17	50317087	TC	T	300	PASS	-	-	-	-	-	Del	-	D	50317087	50317090	1	12	270.745	-	-	2	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	3	4	5	35	41	35	41	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721148704	17	61730883	ATTCCTGATGTTTCT	A	261	PASS	MAP3K3	CCDS32701.1	r.?	-	-	Del	intronic	D	61730883	61730900	14	30	486.739	-	-	1	1	1	MAP3K3|CCDS32701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP3K3|CCDS32701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	5	4	5	4	56	43	56	43	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721149717	17	64063722	GCTAAT	G	505	PASS	CCDC46	CCDS32710.1	r.?	-	-	Del	intronic	D	64063722	64063730	5	42	595.639	-	-	1	1	1	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	5	6	5	7	31	39	31	39	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721150451	17	65506806	CG	C	1380	PASS	PITPNC1	ENST00000423236	r.?	-	-	Del	intronic	D	65506806	65506811	1	156	1240.01	-	-	4	1	1	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	11	12	17	15	53	49	53	49	17	15	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721150618	17	65783533	T	TTTTA	869	PASS	-	-	-	-	-	Ins	-	I	65783533	65783557	4	72	774.907	-	-	5	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	8	7	12	7	48	40	49	41	12	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721151719	17	68041385	TAACA	T	629	PASS	-	-	-	-	-	Del	-	D	68041385	68041394	4	36	595.639	-	-	2	1	1	-	-	./.	0	0	0	0	28	19	28	19	0	0	./.	8	3	8	4	52	45	52	45	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721154181	17	73394513	A	AT	300	PASS	GRB2	CCDS11721.1	r.?	-	-	Ins	intronic	I	73394513	73394523	1	12	265.326	-	-	9	1	1	GRB2|CCDS11721.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GRB2|CCDS11721.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	2	3	36	31	36	31	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721155696	17	76324664	CA	C	540	PASS	-	-	-	-	-	Del	-	D	76324664	76324674	1	24	487.341	-	-	9	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	7	2	11	4	42	30	42	30	11	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721155927	17	76837037	CCGCCGCTTCCGTGT	C	493	PASS	USP36	CCDS32755.1	r.?	-	-	Del	upstream	D	76837037	76837056	14	88	911.502	-	-	1	1	1	USP36|CCDS32755.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	USP36|CCDS32755.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	21	17	21	0	0	./.	10	7	13	7	34	34	34	34	13	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721156166	17	77636790	TC	T	420	PASS	-	-	-	-	-	Del	-	D	77636790	77636794	1	20	376.033	-	-	3	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	4	6	5	24	13	24	13	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721158914	18	2721538	AC	A	420	PASS	ENSG00000101596	CCDS45822.1	r.?	-	-	Del	intronic	D	2721538	2721541	1	20	377.58	-	-	2	1	1	ENSG00000101596|CCDS45822.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000101596|CCDS45822.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	3	4	4	5	24	26	24	26	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721166211	18	24435182	CT	C	900	PASS	AQP4	CCDS11889.1	r.2060delA	c.?	p.?	Del	3'UTR variant	D	24435182	24435184	1	66	812.368	-	-	1	1	1	AQP4|CCDS11889.1|r.2060delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AQP4|CCDS11889.1|r.2060delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	20	22	20	22	0	0	./.	5	10	7	15	36	40	36	40	7	15	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721166739	18	26145963	GGTTAGTAGATATTATT	G	348	PASS	-	-	-	-	-	Del	-	D	26145963	26145981	16	48	650.376	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	7	5	7	5	38	25	38	25	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721167433	18	28195165	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	28195165	28195174	1	7	320.973	-	-	8	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	6	0	6	0	38	28	38	28	6	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721173822	18	48479911	ATTACACCAAAAAGTCTCAGTAGCCAATTCACTAACATCTTTTGATTTGGTAATC	A	377	PASS	-	-	-	-	-	Del	-	D	48479911	48479968	54	56	704.574	-	-	1	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	6	7	0	1	31	28	37	34	6	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721174878	18	51230585	CT	C	420	PASS	-	-	-	-	-	Del	-	D	51230585	51230592	1	20	376.376	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	4	6	6	38	24	38	24	6	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721178404	18	60980321	ACTTATAGTTATTTGCTTTTTTCCTCTAAGT	A	261	PASS	BCL2	CCDS11981.1	r.?	-	-	Del	intronic	D	60980321	60980354	30	28	487.782	-	-	1	1	1	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	6	3	4	3	33	33	35	33	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721178484	18	61174314	C	CTA	420	PASS	SERPINB5	CCDS32839.1	r.?	-	-	Ins	downstream	I	61174314	61174316	2	18	370.957	-	-	0	1	1	SERPINB5|CCDS32839.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SERPINB5|CCDS32839.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	7	13	7	0	0	./.	2	5	3	5	26	21	26	21	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721180804	18	67056716	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	67056716	67056721	2	12	265.571	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	2	4	2	38	22	38	22	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721183493	18	74450217	CTCTGACGGTTCTTCCAAT	C	261	PASS	-	-	-	-	-	Del	-	D	74450217	74450237	18	30	487.782	-	-	1	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	5	4	5	4	30	32	30	32	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721184285	18	76604890	ATC	A	420	PASS	-	-	-	-	-	Del	-	D	76604890	76604908	2	18	379.386	-	-	8	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	5	2	5	2	38	40	38	40	5	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721188971	19	8258164	T	TC	269	PASS	-	-	-	-	-	Ins	-	I	8258164	8258165	1	12	268.021	-	-	0	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	2	3	2	5	29	38	31	38	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721190635	19	11114943	TG	T	300	PASS	SMARCA4	CCDS45971.1	r.?	-	-	Del	intronic	D	11114943	11114945	1	6	260.796	-	-	1	1	1	SMARCA4|CCDS45971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCA4|CCDS45971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	5	0	7	0	44	27	44	27	7	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721190991	19	11780375	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	11780375	11780385	1	12	265.612	-	-	9	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	2	3	3	3	33	63	33	63	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721191857	19	13559695	CAAAAGTCAGGTTAGAGAA	C	377	PASS	CACNA1A	CCDS45998.1	r.?	-	-	Del	intronic	D	13559695	13559715	18	44	704.681	-	-	1	1	1	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1A|CCDS45998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	17	5	17	0	0	./.	3	10	3	10	29	48	29	48	3	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721192781	19	15140678	GAGATTGCACCACTGCACTCGAGCCTGGGCGAC	G	302	PASS	-	-	-	-	-	Del	-	D	15140678	15140714	32	30	596.268	-	-	1	1	1	-	-	./.	0	0	0	0	4	26	4	26	0	0	./.	2	9	1	8	9	33	10	34	2	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721198401	19	28552877	TACCA	T	478	PASS	-	-	-	-	-	Del	-	D	28552877	28552884	4	30	487.254	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	5	5	5	25	25	25	25	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721199669	19	31850127	GGT	G	420	PASS	ENSG00000232700	ENST00000441786	r.?	-	-	Del	intronic	D	31850127	31850131	2	18	378.841	-	-	1	1	1	ENSG00000232700|ENST00000441786|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232700|ENST00000441786|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	2	5	5	5	27	30	27	30	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721200259	19	33310395	TA	T	300	PASS	TDRD12	ENST00000444215	r.?	-	-	Del	intronic	D	33310395	33310399	1	12	271.031	-	-	3	1	1	TDRD12|ENST00000444215|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TDRD12|ENST00000444215|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	3	2	4	2	16	28	16	28	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721200310	19	33405632	G	GA	300	PASS	CCDC123	CCDS32987.1	r.?	-	-	Ins	intronic	I	33405632	33405642	1	6	268.021	-	-	9	1	1	CCDC123|CCDS32987.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC123|CCDS32987.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	5	0	5	0	33	21	33	21	5	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721202003	19	37041551	CTGACATCTATGGAACGCAAATACATTTGTCTCATAAAAAGTAAAAACTTAAATGCTTTTTTTTAAAAAAGTAAAAATAACCAATGTATAAAGAACAG	C	278	PASS	ZNF529	ENST00000334116	r.?	-	-	Del	intronic	D	37041551	37041653	97	32	542.062	-	-	1	1	1	ZNF529|ENST00000334116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF529|ENST00000334116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	7	3	0	0	19	30	26	33	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721202005	19	37049395	G	GA	540	PASS	ZNF529	ENST00000334116	r.?	-	-	Ins	intronic	I	37049395	37049403	1	28	482.437	-	-	7	1	1	ZNF529|ENST00000334116|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF529|ENST00000334116|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	6	4	7	31	26	32	26	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721204485	19	43438697	ATCTGTGAATAAATGTTAAATTATTCACAGTCACCTGACCTAATGCGTAGCACTGTGGAAATGTTCACCAAACAGCATTTATTATTAATTTGCTTCCATGAGAAAGCACCTTTACGTCAGATCCCTGTGGACAAGCTGCTACCTGGTACATCTTCTCTCTTCTGTTTCTGCTTCTGGGGATATTAGACTTTCTATGGAGTGTCCTAGGCCTCCTAAGGCAGTTGGCTGATGGCCTACAAAGCTTGTCTTTCTGTCCTCTCCACTCTGAGTGTCAGGTGAAGAAAGC	A	261	PASS	PSG1	ENST00000449000	r.?	-	-	Del	intronic	D	43438697	43438988	285	30	487.856	-	-	1	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	27	17	27	0	0	./.	4	5	0	0	14	25	18	30	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721206036	19	46765406	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	46765406	46765407	1	12	321.625	-	-	0	1	1	-	-	./.	0	0	0	0	3	14	3	14	0	0	./.	1	5	1	5	4	26	4	26	1	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721209068	19	52865154	GT	G	749	PASS	ZNF610	CCDS12851.1	r.?	-	-	Del	intronic	D	52865154	52865157	1	54	704.681	-	-	2	1	1	ZNF610|CCDS12851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF610|CCDS12851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	11	21	11	0	0	./.	8	5	12	8	40	29	40	29	12	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721210528	19	55194794	GC	G	627	PASS	-	-	-	-	-	Del	-	D	55194794	55194798	1	48	649.27	-	-	3	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	7	5	11	6	54	46	54	46	11	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721211014	19	55985538	TG	T	300	PASS	ZNF628	CCDS33116.2	r.?	-	-	Del	upstream	D	55985538	55985548	1	12	265.01	-	-	9	1	1	ZNF628|CCDS33116.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF628|CCDS33116.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	17	10	17	0	0	./.	2	3	2	3	43	37	43	37	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721211714	19	57378968	TTGCAGATCTC	T	290	PASS	-	-	-	-	-	Del	-	D	57378968	57378981	10	32	542.062	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	7	3	8	3	57	37	57	37	8	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721212595	19	59068569	AAG	A	300	PASS	MZF1	CCDS12988.1	r.?	-	-	Del	downstream	D	59068569	59068584	2	12	262	-	-	7	1	1	MZF1|CCDS12988.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	UBE2MP1|CCDS12987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	3	21	28	21	28	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721215662	2	8213213	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	8213213	8213223	1	10	265.81	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	4	1	1	39	37	39	37	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721217020	2	11351857	TTATCTGCTAGTCGTGCC	T	667	PASS	ROCK2	CCDS42654.1	r.2585_2601del17	c.2136_2152del17	p.A713fs*2	Del	frameshift	D	11351857	11351876	17	150	1232.36	-	-	1	1	1	ROCK2|CCDS42654.1|r.2585_2601del17|c.2136_2152del17|p.A713fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ROCK2|CCDS42654.1|r.2585_2601del17|c.2136_2152del17|p.A713fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	8	10	8	10	0	0	./.	9	14	9	14	29	35	29	35	9	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721217794	2	13375519	TC	T	480	PASS	-	-	-	-	-	Del	-	D	13375519	13375521	1	24	429.51	-	-	1	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	5	3	7	3	37	36	37	36	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721217828	2	13542834	AG	A	480	PASS	-	-	-	-	-	Del	-	D	13542834	13542837	1	24	430.112	-	-	2	1	1	-	-	./.	0	0	0	0	22	5	22	5	0	0	./.	5	3	7	3	32	30	32	30	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721218082	2	14260870	ATATT	A	420	PASS	-	-	-	-	-	Del	-	D	14260870	14260882	4	20	376.348	-	-	2	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	3	5	3	35	27	35	27	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721218343	2	15007088	AATAATAATATATGCCTGACTTTTTTAGTCACAGAAAACCC	A	261	PASS	-	-	-	-	-	Del	-	D	15007088	15007132	40	30	483.876	-	-	1	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	4	5	2	2	31	25	33	28	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721218747	2	16041453	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	16041453	16041470	2	12	268.82	-	-	8	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	2	3	2	3	46	34	46	34	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721219728	2	19098159	AG	A	660	PASS	-	-	-	-	-	Del	-	D	19098159	19098161	1	36	591.404	-	-	1	1	1	-	-	./.	0	0	0	0	20	7	20	7	0	0	./.	8	3	10	3	47	28	47	28	10	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721226219	2	36585002	TGTTTA	T	414	PASS	CRIM1	CCDS1783.1	r.?	-	-	Del	intronic	D	36585002	36585010	5	36	536.436	-	-	1	1	1	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	5	5	6	5	34	31	34	31	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721227132	2	38918881	T	TA	300	PASS	GALM	CCDS1797.1	r.?	-	-	Ins	intronic	I	38918881	38918888	1	10	264.004	-	-	6	1	1	GALM|CCDS1797.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALM|CCDS1797.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	1	4	1	4	28	27	28	27	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721229536	2	45620871	TA	T	600	PASS	SRBD1	CCDS1823.1	r.?	-	-	Del	intronic	D	45620871	45620877	1	27	537.038	-	-	5	1	1	SRBD1|CCDS1823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRBD1|CCDS1823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	22	22	22	0	0	./.	8	2	9	3	47	23	47	23	9	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721231292	2	50758803	C	CT	420	PASS	NRXN1	CCDS46282.1	r.?	-	-	Ins	intronic	I	50758803	50758813	1	18	370.93	-	-	9	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	22	27	22	0	0	./.	2	5	4	6	37	36	38	37	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721231424	2	51211832	CTGTA	C	507	PASS	NRXN1	CCDS46282.1	r.?	-	-	Del	intronic	D	51211832	51211838	4	20	537.64	-	-	1	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	9	1	10	6	46	30	46	30	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721231735	2	52240007	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	52240007	52240017	1	16	318.37	-	-	9	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	3	3	6	4	42	34	42	34	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721231988	2	53065546	AAAGTCAA	ATG	464	PASS	-	-	-	-	-	Complex	-	DI	53065547	53065553	7	77	0	-	-	0	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	10	6	0	0	36	40	36	40	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721233986	2	59171267	ACT	A	420	PASS	-	-	-	-	-	Del	-	D	59171267	59171272	2	20	366.113	-	-	2	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	4	3	7	4	31	31	31	31	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721236380	2	66035630	AGAAAT	A	776	PASS	-	-	-	-	-	Del	-	D	66035630	66035637	5	42	806.461	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	13	2	16	3	44	24	44	24	16	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721239199	2	73616102	TG	T	600	PASS	ALMS1	CCDS42697.1	r.?	-	-	Del	intronic	D	73616102	73616106	1	35	537.64	-	-	3	1	1	ALMS1|CCDS42697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALMS1|CCDS42697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	4	6	6	36	34	36	34	6	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721239320	2	73939085	CA	C	569	PASS	AC092653.2	ENST00000502958	r.?	-	-	Del	downstream	D	73939085	73939087	1	35	537.038	-	-	1	1	1	AC092653.2|ENST00000502958|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC092653.2|ENST00000502958|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	18	17	18	17	0	0	./.	6	4	7	4	31	22	31	22	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721240545	2	77592656	CGTAT	C	329	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Del	intronic	D	77592656	77592664	4	12	310.543	-	-	1	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	22	3	22	0	0	./.	1	5	2	7	22	41	22	41	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721240907	2	78645334	AGTCAC	A	319	PASS	-	-	-	-	-	Del	-	D	78645334	78645342	5	30	591.404	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	9	3	10	37	31	37	31	3	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721241191	2	79433386	AG	A	480	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	79433386	79433388	1	25	427.704	-	-	1	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	4	4	7	8	39	30	39	30	7	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721242018	2	82136177	AG	A	720	PASS	-	-	-	-	-	Del	-	D	82136177	82136179	1	48	644.566	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	7	5	9	6	31	30	31	30	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721242528	2	83974501	GAAGAAGTTAGTCATCTACAAACCAAGGAGA	G	261	PASS	-	-	-	-	-	Del	-	D	83974501	83974535	30	28	483.274	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	6	3	3	2	29	34	32	35	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721244801	2	91704476	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	91704476	91704483	1	18	367.919	-	-	6	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	5	7	7	29	34	30	34	7	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721248623	2	103636803	TA	T	540	PASS	-	-	-	-	-	Del	-	D	103636803	103636806	1	24	483.274	-	-	2	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	7	2	7	2	39	22	39	22	7	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721254347	2	122634030	TTGTGAACTTTTAC	T	348	PASS	-	-	-	-	-	Del	-	D	122634030	122634048	13	49	645.168	-	-	1	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	6	6	7	7	42	34	42	34	7	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721254660	2	123778058	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	123778058	123778059	1	12	315.359	-	-	0	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	1	5	1	5	25	29	26	29	1	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721255273	2	125623345	AC	A	420	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	125623345	125623350	1	20	375.746	-	-	4	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	3	4	4	4	21	28	21	28	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721261243	2	141868516	ACATATCAAAACAAAATAGCCACCTGGGGAAAATAGCCTCTTC	A	406	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141868516	141868562	42	63	752.094	-	-	1	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	8	6	2	2	30	25	36	29	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721265095	2	154068679	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	154068679	154068689	1	12	265.81	-	-	9	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	2	3	2	3	28	35	28	36	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721266176	2	158034425	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	158034425	158034435	1	12	260.993	-	-	9	1	1	-	-	./.	0	0	0	0	23	18	25	18	0	0	./.	2	3	2	3	26	35	26	36	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721274706	2	184839844	CT	C	360	PASS	-	-	-	-	-	Del	-	D	184839844	184839853	1	15	322.584	-	-	8	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	4	2	5	3	36	20	36	20	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721275010	2	185717346	G	GT	389	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Ins	intronic	I	185717346	185717352	1	20	372.134	-	-	5	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	3	4	3	5	27	31	27	32	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721277365	2	192967097	CA	C	360	PASS	TMEFF2	CCDS2314.1	r.?	-	-	Del	intronic	D	192967097	192967101	1	16	321.38	-	-	3	1	1	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	3	4	8	18	24	18	24	4	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721278005	2	195128906	TTTGGTAACTGAATA	T	423	PASS	-	-	-	-	-	Del	-	D	195128906	195128925	14	72	806.461	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	7	8	10	11	25	35	25	35	10	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721279131	2	198329133	GGTGCAGCTCTCAGAT	G	290	PASS	COQ10B	CCDS2319.1	r.?	-	-	Del	intronic	D	198329133	198329153	15	36	537.64	-	-	1	1	1	COQ10B|CCDS2319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COQ10B|CCDS2319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	4	19	4	0	0	./.	5	5	6	5	31	15	31	15	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721280266	2	201920928	T	TAAATAAATA	290	PASS	FAM126B	CCDS2335.1	r.?	-	-	Ins	intronic	I	201920928	201920936	9	35	482.853	-	-	0	1	-	FAM126B|CCDS2335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM126B|CCDS2335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	6	4	4	4	24	18	25	18	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721283287	2	210707423	TTCTA	T	298	PASS	UNC80	CCDS46504.1	r.?	-	-	Del	intronic	D	210707423	210707430	4	15	318.972	-	-	1	1	1	UNC80|CCDS46504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC80|CCDS46504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	2	5	2	31	32	31	32	5	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721290467	2	230903211	CA	C	540	PASS	SLC16A14	CCDS2473.1	r.?	-	-	Del	intronic	D	230903211	230903215	1	30	483.876	-	-	3	1	1	SLC16A14|CCDS2473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC16A14|CCDS2473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	5	5	5	27	23	27	23	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721297292	20	6801889	CTGTTAAATAA	C	406	PASS	-	-	-	-	-	Del	-	D	6801889	6801903	10	60	759.519	-	-	1	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	9	5	9	8	44	45	44	45	9	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721297454	20	7244431	GT	G	660	PASS	-	-	-	-	-	Del	-	D	7244431	7244433	1	42	595.432	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	5	6	5	8	35	52	35	52	5	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721298865	20	11592254	GGA	G	269	PASS	-	-	-	-	-	Del	-	D	11592254	11592257	2	12	261.839	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	2	4	35	25	35	25	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721300728	20	16572739	TC	T	360	PASS	-	-	-	-	-	Del	-	D	16572739	16572742	1	15	325.766	-	-	2	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	2	4	3	5	21	47	21	47	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721302159	20	20677992	TA	T	360	PASS	RALGAPA2	CCDS46584.1	r.?	-	-	Del	intronic	D	20677992	20678000	1	16	325.766	-	-	7	1	1	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	3	3	5	5	31	30	31	30	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721304712	20	29509411	ACAC	ATG	357	PASS	-	-	-	-	-	Complex	-	DI	29509412	29509414	3	16	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	0	0	16	34	16	34	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721307791	20	35373104	TTTAAATCATGGGAGGCTTCTTAAA	T	464	PASS	NDRG3	CCDS13285.1	r.?	-	-	Del	intronic	D	35373104	35373131	24	45	864.496	-	-	1	1	1	NDRG3|CCDS13285.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NDRG3|CCDS13285.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	24	9	24	0	0	./.	2	14	3	10	18	41	18	45	3	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721309433	20	41676610	CAAATGA	CTCAG	985	PASS	PTPRT	CCDS42874.1	r.?	-	-	Complex	intronic	DI	41676611	41676616	6	104	0	-	-	0	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	7	12	0	0	26	43	26	43	7	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721310241	20	44204233	ACCCAGAACCTATCTTTTTG	A	290	PASS	WFDC8	CCDS13361.1	r.?	-	-	Del	intronic	D	44204233	44204258	19	32	542.944	-	-	1	1	1	WFDC8|CCDS13361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WFDC8|CCDS13361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	7	3	6	3	35	19	36	19	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721311679	20	47942184	G	GATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACGGGGTTATTAGATGGATGTTGTGAGA	261	PASS	ENSG00000236127	ENST00000422874	r.?	-	-	Ins	upstream	I	47942184	47942259	82	18	44.3291	-	-	0	1	1	ENSG00000236127|ENST00000422874|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000236127|ENST00000422874|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	25	36	25	36	0	0	./.	1	8	0	0	62	54	64	62	1	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721314698	20	54711753	TC	T	660	PASS	-	-	-	-	-	Del	-	D	54711753	54711760	1	42	593.626	-	-	6	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	6	5	10	9	28	31	28	31	10	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721315809	20	57714833	CT	C	420	PASS	-	-	-	-	-	Del	-	D	57714833	57714839	1	18	380.061	-	-	5	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	5	2	7	3	47	37	47	37	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721319794	21	10618773	T	TGGTGTATATACACACATATGCATATA	348	PASS	-	-	-	-	-	Ins	-	I	10618773	10618774	26	14	270.728	-	-	0	1	-	-	-	./.	0	0	0	0	16	34	16	34	0	0	./.	1	6	0	0	61	69	62	69	1	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721325333	21	23467213	A	AAAG	447	PASS	-	-	-	-	-	Ins	-	I	23467213	23467220	3	28	472.705	-	-	2	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	3	6	5	6	43	39	43	39	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721325580	21	24067721	GCCATCTGCA	G	319	PASS	-	-	-	-	-	Del	-	D	24067721	24067733	9	40	597.618	-	-	1	1	1	-	-	./.	0	0	0	0	18	23	18	23	0	0	./.	7	4	7	6	29	29	29	29	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721327393	21	28477042	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	28477042	28477051	1	60	751.574	-	-	8	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	5	9	7	10	41	38	41	41	7	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721327750	21	29226383	TA	T	480	PASS	-	-	-	-	-	Del	-	D	29226383	29226386	1	24	434.632	-	-	2	1	1	-	-	./.	0	0	0	0	13	24	13	24	0	0	./.	3	5	5	9	24	28	24	28	5	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721328822	21	31944893	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	31944893	31944902	1	16	322.361	-	-	8	1	1	-	-	./.	0	0	0	0	30	11	30	11	0	0	./.	3	3	3	4	26	37	26	38	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721330359	21	35418348	TCTATTGGATTACC	T	319	PASS	-	-	-	-	-	Del	-	D	35418348	35418364	13	42	597.618	-	-	1	1	1	-	-	./.	0	0	0	0	9	24	9	24	0	0	./.	5	6	5	6	46	29	46	29	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721330724	21	36471635	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	36471635	36471650	2	12	323.565	-	-	7	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	1	5	1	6	27	54	27	54	1	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721331486	21	38337489	AAACCTGAG	A	319	PASS	HLCS	CCDS13647.1	r.?	-	-	Del	intronic	D	38337489	38337499	8	36	595.21	-	-	1	1	1	HLCS|CCDS13647.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HLCS|CCDS13647.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	3	8	3	8	24	31	24	31	3	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721332417	21	40502763	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	40502763	40502769	1	25	429.815	-	-	5	1	1	-	-	./.	0	0	0	0	21	12	21	13	0	0	./.	4	4	7	6	36	40	36	40	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721341408	22	31310253	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	31310253	31310260	1	15	323.237	-	-	6	1	1	-	-	./.	0	0	0	0	10	12	11	12	0	0	./.	4	2	6	4	20	20	20	20	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721343924	22	38146534	TG	T	329	PASS	TRIOBP	CCDS43015.1	r.?	-	-	Del	intronic	D	38146534	38146538	1	12	326.849	-	-	3	1	1	TRIOBP|CCDS43015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIOBP|CCDS43015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	1	5	2	5	20	22	20	22	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721344440	22	39560233	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	39560233	39560243	2	16	327.451	-	-	9	1	1	-	-	./.	0	0	0	0	19	5	19	5	0	0	./.	3	3	5	5	40	25	40	25	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721348029	22	49939992	TG	T	389	PASS	-	-	-	-	-	Del	-	D	49939992	49939995	1	20	382.026	-	-	2	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	4	3	6	18	24	18	24	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721348561	3	255416	TG	T	389	PASS	CHL1	CCDS2556.1	r.?	-	-	Del	intronic	D	255416	255419	1	20	373.312	-	-	2	1	1	CHL1|CCDS2556.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHL1|CCDS2556.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	25	18	25	0	0	./.	3	4	5	4	32	39	32	39	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721351530	3	8195829	AGATAGGTTTT	A	290	PASS	-	-	-	-	-	Del	-	D	8195829	8195842	10	35	537.259	-	-	1	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	6	4	8	5	21	22	21	22	8	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721354138	3	16662334	A	AT	269	PASS	DAZL	ENST00000454457	r.?	-	-	Ins	intronic	I	16662334	16662342	1	10	260.803	-	-	7	1	1	DAZL|ENST00000454457|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAZL|ENST00000454457|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	1	4	2	7	19	32	19	32	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721354761	3	19303006	GTTTGAAATTTTTTTTCTCAA	G	261	PASS	KCNH8	CCDS2632.1	r.?	-	-	Del	intronic	D	19303006	19303031	20	24	484.617	-	-	1	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	29	20	29	0	0	./.	2	7	2	7	28	27	28	27	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721356721	3	25784260	C	CAATA	420	PASS	NGLY1	CCDS46778.1	r.?	-	-	Ins	intronic	I	25784260	25784263	4	20	360.067	-	-	0	1	1	NGLY1|CCDS46778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NGLY1|CCDS46778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	13	0	0	./.	4	3	8	6	23	23	23	23	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721357836	3	29489133	GAGTACCCAGTA	G	290	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29489133	29489149	11	27	538.464	-	-	1	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	2	8	3	8	35	39	35	39	3	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721358812	3	32614999	G	GGT	360	PASS	DYNC1LI1	CCDS2654.1	r.?	-	-	Ins	upstream	I	32614999	32615003	2	15	315.853	-	-	1	1	1	DYNC1LI1|CCDS2654.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	DYNC1LI1|CCDS2654.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	17	8	17	0	0	./.	2	4	4	5	15	23	15	23	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721359385	3	34884642	TATTCA	T	507	PASS	-	-	-	-	-	Del	-	D	34884642	34884648	5	36	532.443	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	5	5	8	6	31	27	31	27	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721359801	3	36422277	CA	C	269	PASS	STAC	CCDS2662.1	r.?	-	-	Del	intronic	D	36422277	36422281	1	12	269.232	-	-	3	1	1	STAC|CCDS2662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAC|CCDS2662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	3	2	3	3	16	15	16	15	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721362670	3	47855938	AG	A	300	PASS	DHX30	CCDS2759.1	r.?	-	-	Del	intronic	D	47855938	47855940	1	6	251.17	-	-	1	1	-	DHX30|CCDS2759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DHX30|CCDS2759.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	5	0	6	0	22	11	22	11	6	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721379686	3	105007308	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	105007308	105007315	1	35	532.443	-	-	6	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	6	4	8	6	27	25	27	25	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721380909	3	108507703	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	108507703	108507723	2	15	323.078	-	-	9	1	-	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	4	2	35	44	35	44	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721382754	3	112957722	AC	A	480	PASS	BOC	CCDS2971.1	r.?	-	-	Del	intronic	D	112957722	112957725	1	21	430.771	-	-	2	1	1	BOC|CCDS2971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BOC|CCDS2971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	2	6	2	7	33	44	33	44	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721384664	3	118227562	CA	C	509	PASS	-	-	-	-	-	Del	-	D	118227562	118227564	1	30	469.566	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	5	5	6	41	33	41	33	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721384725	3	118388465	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	118388465	118388475	1	14	360.067	-	-	9	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	1	6	1	7	45	40	45	41	1	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721385917	3	121487309	C	CT	300	PASS	IQCB1	CCDS33837.1	r.?	-	-	Ins	downstream	I	121487309	121487310	1	10	263.211	-	-	0	1	1	IQCB1|CCDS33837.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	IQCB1|CCDS33837.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	6	16	6	16	0	0	./.	1	4	0	0	36	35	36	35	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721387006	3	124452109	ATC	A	269	PASS	UMPS	CCDS3029.1	r.?	-	-	Del	intronic	D	124452109	124452117	2	12	269.232	-	-	3	1	1	UMPS|CCDS3029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UMPS|CCDS3029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	2	3	3	4	45	41	45	41	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721397498	3	151556261	CCAGAACCGTTTATTAATAAAATA	C	319	PASS	-	-	-	-	-	Del	-	D	151556261	151556286	23	42	592.31	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	5	6	5	6	40	61	40	61	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721397828	3	152466612	CA	C	420	PASS	-	-	-	-	-	Del	-	D	152466612	152466616	1	20	376.924	-	-	3	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	4	3	5	4	47	48	47	48	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721398431	3	153876163	GTT	G	480	PASS	ENSG00000114790	CCDS46938.1	r.?	-	-	Del	intronic	D	153876163	153876167	2	24	430.771	-	-	3	1	1	ENSG00000114790|CCDS46938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000114790|CCDS46938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	25	18	25	0	0	./.	5	3	8	6	52	36	52	36	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721398640	3	154580699	CTCCATGACTTTCAAAA	C	261	PASS	-	-	-	-	-	Del	-	D	154580699	154580720	16	30	481.005	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	5	4	5	51	38	51	38	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721402225	3	163753580	AG	A	480	PASS	-	-	-	-	-	Del	-	D	163753580	163753582	1	25	430.771	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	4	6	9	36	37	36	37	6	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721402544	3	164601285	TC	T	300	PASS	-	-	-	-	-	Del	-	D	164601285	164601288	1	12	268.028	-	-	2	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	5	3	31	48	31	48	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721403169	3	166529056	GAGGGAGGCA	G	464	PASS	-	-	-	-	-	Del	-	D	166529056	166529068	9	77	854.317	-	-	1	1	1	-	-	./.	0	0	0	0	26	14	26	14	0	0	./.	6	10	7	11	39	29	39	29	7	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721403307	3	166853357	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	166853357	166853367	1	12	266.221	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	14	18	0	0	./.	2	3	2	3	57	34	58	34	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721403799	3	168248472	AT	A	840	PASS	-	-	-	-	-	Del	-	D	168248472	168248474	1	55	753.849	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	4	10	5	12	38	40	38	40	5	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721405785	3	173107318	TTTG	T	389	PASS	-	-	-	-	-	Del	-	D	173107318	173107334	3	20	376.924	-	-	5	1	1	-	-	./.	0	0	0	0	25	11	25	11	0	0	./.	4	3	5	3	39	38	39	38	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721405859	3	173271890	A	AT	480	PASS	NLGN1	CCDS3222.1	r.?	-	-	Ins	intronic	I	173271890	173271897	1	24	425.954	-	-	6	1	1	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NLGN1|CCDS3222.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	24	10	25	0	0	./.	5	3	7	5	38	40	38	40	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721406642	3	174913185	GA	G	540	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Del	intronic	D	174913185	174913191	1	30	482.209	-	-	5	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	4	5	5	7	34	41	34	41	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721406751	3	175151482	C	CT	600	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Ins	intronic	I	175151482	175151492	1	20	524.616	-	-	9	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	17	0	0	./.	9	1	9	2	58	43	58	43	9	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721407458	3	176769471	AG	A	689	PASS	TBL1XR1	CCDS46961.1	r.507delC	c.247delC	p.L83fs*1	Del	frameshift	D	176769471	176769475	1	49	645.554	-	-	3	1	1	TBL1XR1|CCDS46961.1|r.507delC|c.247delC|p.L83fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TBL1XR1|CCDS46961.1|r.507delC|c.247delC|p.L83fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	11	14	11	0	0	./.	6	6	7	8	37	27	37	27	7	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721407857	3	177584766	GAGTA	G	358	PASS	-	-	-	-	-	Del	-	D	177584766	177584771	4	18	376.924	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	2	5	3	5	37	34	37	34	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721408297	3	178849196	G	GT	651	PASS	-	-	-	-	-	Ins	-	I	178849196	178849206	1	45	634.115	-	-	9	1	1	-	-	./.	0	0	0	0	20	19	21	19	0	0	./.	8	4	11	6	37	55	37	55	11	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721408883	3	180116338	G	GTGTA	300	PASS	-	-	-	-	-	Ins	-	I	180116338	180116340	4	6	256.589	-	-	0	1	-	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	0	5	0	1	32	34	32	34	0	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721409944	3	182885923	C	CA	540	PASS	LAMP3	ENST00000476015	r.?	-	-	Ins	upstream	I	182885923	182885925	1	30	479.199	-	-	1	1	1	LAMP3|ENST00000476015|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	LAMP3|ENST00000476015|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	17	19	17	0	0	./.	4	5	6	5	44	31	45	31	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721414504	3	193856979	CAGTT	C	1196	PASS	HES1	CCDS3305.1	r.?	-	-	Del	downstream	D	193856979	193856990	4	144	1184.62	-	-	2	1	1	HES1|CCDS3305.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	HES1|CCDS3305.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	19	16	19	16	0	0	./.	11	11	16	12	49	38	50	38	17	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721418858	4	7221146	AG	A	600	PASS	SORCS2	CCDS47008.1	r.?	-	-	Del	intronic	D	7221146	7221150	1	35	535.835	-	-	3	1	1	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	4	6	6	7	27	25	27	25	6	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721419414	4	9111055	TAC	T	600	PASS	-	-	-	-	-	Del	-	D	9111055	9111061	2	32	536.437	-	-	2	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	7	3	8	3	29	28	29	28	8	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721420850	4	13745946	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	13745946	13745947	1	25	425.778	-	-	0	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	4	4	6	4	40	33	41	33	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721421761	4	16458745	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	16458745	16458755	1	12	263.703	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	6	3	35	28	36	28	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721423461	4	21626281	TA	T	689	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21626281	21626283	1	40	643.483	-	-	1	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	9	3	9	4	44	36	44	36	9	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721423549	4	21825660	TC	T	420	PASS	KCNIP4	CCDS43216.1	r.?	-	-	Del	intronic	D	21825660	21825662	1	18	376.77	-	-	1	1	1	KCNIP4|CCDS43216.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43216.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	5	2	6	3	31	31	31	31	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721423663	4	22256209	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	22256209	22256218	1	15	318.731	-	-	8	1	1	-	-	./.	0	0	0	0	22	13	22	14	0	0	./.	4	2	4	3	39	31	39	31	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721427058	4	32257356	AAACT	A	540	PASS	-	-	-	-	-	Del	-	D	32257356	32257364	4	24	484.419	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	7	2	9	5	38	32	38	32	9	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721427713	4	34553387	GATAGTCTATAATTTTAAATATATTTTAAAAACA	G	290	PASS	-	-	-	-	-	Del	-	D	34553387	34553423	33	35	538.243	-	-	1	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	6	4	0	0	34	22	36	22	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721432282	4	46818663	A	AT	840	PASS	COX7B2	CCDS3472.2	r.?	-	-	Ins	intronic	I	46818663	46818672	1	48	743.907	-	-	8	1	1	COX7B2|CCDS3472.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	COX7B2|CCDS3472.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	11	26	11	0	0	./.	3	11	11	15	37	37	37	38	11	15	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721434113	4	49635504	T	TGAATGGAATGGAACGGAAC	297	PASS	ENSG00000233000	ENST00000413383	r.?	-	-	Ins	upstream	I	49635504	49635506	19	143	930.667	-	-	0	1	1	ENSG00000233000|ENST00000413383|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000233000|ENST00000413383|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	62	61	64	65	0	0	./.	10	12	1	2	185	161	190	178	10	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721435686	4	57013128	GGTTTAAGAAAGAAAAGGT	G	348	PASS	-	-	-	-	-	Del	-	D	57013128	57013149	18	48	644.687	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	7	5	8	5	34	22	34	22	8	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721436620	4	59354464	AC	A	420	PASS	-	-	-	-	-	Del	-	D	59354464	59354469	1	20	374.362	-	-	4	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	4	3	5	24	33	24	33	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721437203	4	60788138	G	GATGTAAGAATCGTTCTATAT	356	PASS	-	-	-	-	-	Ins	-	I	60788138	60788162	20	45	500.795	-	-	1	1	1	-	-	./.	0	0	0	0	24	16	25	16	0	0	./.	8	4	3	2	48	39	55	42	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721437732	4	62208413	TCTAGCACCCGTCTCATAGCTTTTGTCTTGCCAAACCCTTAAACTTCTTTTCAGTGACTTCAAACAGCCATAATTTTAACACATTTCAGTTCTTTGGCTTAACCATCTCTAGTAGCCTCACCA	T	261	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62208413	62208538	122	28	481.408	-	-	1	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	6	0	0	16	22	19	28	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721438217	4	63542150	TG	T	480	PASS	-	-	-	-	-	Del	-	D	63542150	63542155	1	24	430.594	-	-	4	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	3	7	3	32	33	32	33	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721438268	4	63735185	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	63735185	63735194	1	20	372.556	-	-	8	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	4	3	4	4	39	29	39	29	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721438372	4	64035126	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	64035126	64035136	1	16	318.731	-	-	9	1	1	-	-	./.	0	0	0	0	12	6	13	6	0	0	./.	3	3	5	4	34	24	34	24	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721438534	4	64485238	CCTCACTATGCAAACGTTATTCAAGCTTCCACTTGTATCAGATGTGCTGCTATCTCCCTGTCCAAACTCAGATTCAATGTGAGAATATAGATGGATATCAGAAAGCACGACATCACTGGCCCATTCTACAACATTCCACTATAATGATGTCATTAATGGATAATAACAGAATCCAAATAAATAAATTATGGGAAGAAAATGCCTTGCAACCAAACTTCCCTGTAATCTCTAAAAGTTGTCTCTTTGTTGCTCAGAAAATTAG	CTACCTCATCATA	493	PASS	-	-	-	-	-	Complex	-	DI	64485239	64485499	261	88	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	10	7	0	0	15	19	25	26	10	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721441079	4	71094889	TTGC	T	569	PASS	C4orf7	CCDS3537.1	r.?	-	-	Del	intronic	D	71094889	71094897	3	35	538.243	-	-	2	1	1	C4orf7|CCDS3537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf7|CCDS3537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	4	6	5	8	42	30	42	30	5	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721441202	4	71362710	AATTA	AC	261	PASS	-	-	-	-	-	Complex	-	DI	71362711	71362714	4	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	5	4	0	0	33	29	33	29	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721441507	4	72235647	T	TAC	480	PASS	SLC4A4	CCDS3549.1	r.?	-	-	Ins	intronic	I	72235647	72235660	2	21	420.961	-	-	6	1	1	SLC4A4|CCDS3549.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC4A4|CCDS3549.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	6	5	7	32	31	32	32	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721441910	4	73412352	GA	G	329	PASS	ADAMTS3	CCDS3553.1	r.?	-	-	Del	intronic	D	73412352	73412360	1	15	322.946	-	-	7	1	1	ADAMTS3|CCDS3553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS3|CCDS3553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	2	4	3	7	36	41	36	41	3	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721444401	4	80788506	ATTGAAATCATAGACCTAAATGTCATCT	A	406	PASS	-	-	-	-	-	Del	-	D	80788506	80788538	27	63	753.54	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	6	8	4	6	24	26	26	28	6	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721444671	4	81700936	TGAGAA	T	540	PASS	C4orf22	CCDS3587.1	r.?	-	-	Del	intronic	D	81700936	81700944	5	30	484.419	-	-	1	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	28	15	28	0	0	./.	4	5	5	5	24	36	24	36	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721447495	4	89478285	TC	T	389	PASS	HERC3	ENST00000513325	r.?	-	-	Del	intronic	D	89478285	89478287	1	18	376.168	-	-	1	1	1	HERC3|ENST00000513325|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HERC3|ENST00000513325|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	2	5	2	9	24	35	24	35	2	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721451286	4	101780973	TG	T	780	PASS	-	-	-	-	-	Del	-	D	101780973	101780976	1	56	699.716	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	6	7	8	10	38	42	38	42	8	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721453531	4	109393484	AAT	A	329	PASS	-	-	-	-	-	Del	-	D	109393484	109393489	2	15	322.946	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	2	4	4	4	23	30	23	30	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721453708	4	109804606	T	TA	300	PASS	COL25A1	CCDS43258.1	r.?	-	-	Ins	intronic	I	109804606	109804614	1	12	266.111	-	-	7	1	1	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	3	2	5	5	36	36	36	36	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721453952	4	110616559	AAGACCC	A	290	PASS	CASP6	CCDS3684.1	r.?	-	-	Del	intronic	D	110616559	110616569	6	32	538.243	-	-	1	1	1	CASP6|CCDS3684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASP6|CCDS3684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	7	3	7	3	27	24	27	24	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721454463	4	111950893	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	111950893	111950900	1	45	638.667	-	-	6	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	8	4	10	9	37	31	38	31	10	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721456381	4	117335240	AC	A	600	PASS	-	-	-	-	-	Del	-	D	117335240	117335246	1	32	536.437	-	-	5	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	7	3	9	6	36	32	36	32	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721456652	4	118030793	AT	A	540	PASS	-	-	-	-	-	Del	-	D	118030793	118030800	1	28	484.419	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	6	9	6	31	27	31	27	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721457181	4	119685654	CTGTACGGAACTACTGCATTAAGAACCAGGTATATTCTGTCTGGCAAGGACATAAAAAATTATTGTTTT	C	290	PASS	SEC24D	CCDS3710.1	r.?	-	-	Del	intronic	D	119685654	119685723	68	35	538.243	-	-	1	1	1	SEC24D|CCDS3710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC24D|CCDS3710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	17	23	17	0	0	./.	6	4	0	0	23	26	29	30	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721459115	4	124808940	TGGGAAAAA	T	290	PASS	-	-	-	-	-	Del	-	D	124808940	124808951	8	35	538.243	-	-	1	1	1	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	4	6	4	6	24	24	24	24	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721459560	4	126272573	A	AT	420	PASS	FAT4	CCDS3732.3	r.?	-	-	Ins	intronic	I	126272573	126272579	1	14	372.556	-	-	5	1	1	FAT4|CCDS3732.3|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAT4|CCDS3732.3|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	1	6	1	7	29	37	30	38	1	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721461069	4	130786906	AG	A	360	PASS	-	-	-	-	-	Del	-	D	130786906	130786909	1	16	322.344	-	-	2	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	3	3	3	4	42	35	42	35	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721461318	4	131581793	CTACGTTTCTACTAGGAAGACAGATTGATATAGTAAATAATACCATTTCAGTATATTTTTTAAAAGACTGTGTTTAAAGACATTGATTGCTGGCAATTTTCTTCTAAATAATAAATAGCCTTGATAATTAATTATGCGGGTGTTTATACATTATTTCCAGCATGCAAAGTCCATGCTAGCATTCCTAATTCACATCAGAGGAGGTAATGTTGTTATAAGTAAAATATATATAATTCTGATTTTAAATATTCTACTAAATGGTAAAGAAATCAATATTCCCATTATCTCTAGATATTGAGAAAAAAGAAATACACCCATTTAAAAACATAGGAAAAACTTAATTAATGTGCAAATAATGTAATAATGTGGGATAGATAATTGTAAACACAATGCATACAAATTGAAAAAATAAAACCTTCAAAGCCAGACACATTGCATCTCTCTGACCCTTCTGTGGTCACATTTCCCCTTTCATTACAATAAGGAAATATTCTTAGCTTTTAAGGATACATGTGATTAGATTGCATGTCCAGAAAATTCTGGCTGTTCTCTCCATCTCATGG	C	319	PASS	-	-	-	-	-	Del	-	D	131581793	131582357	562	42	592.067	-	-	1	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	6	5	0	0	22	25	28	30	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721462252	4	133998495	TA	T	360	PASS	-	-	-	-	-	Del	-	D	133998495	133998497	1	15	322.946	-	-	1	1	1	-	-	./.	0	0	0	0	27	13	27	13	0	0	./.	4	2	5	3	30	38	30	38	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721463710	4	138391868	GTTCTT	G	449	PASS	-	-	-	-	-	Del	-	D	138391868	138391877	5	24	428.788	-	-	1	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	3	5	5	5	29	40	29	40	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721463968	4	139141557	TC	T	300	PASS	SLC7A11	CCDS3742.1	r.?	-	-	Del	intronic	D	139141557	139141560	1	6	269.121	-	-	2	1	1	SLC7A11|CCDS3742.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC7A11|CCDS3742.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	5	0	8	1	30	22	30	22	8	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721464006	4	139241120	GC	G	1260	PASS	-	-	-	-	-	Del	-	D	139241120	139241123	1	130	1130.31	-	-	2	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	12	9	14	12	33	33	33	33	14	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721466219	4	146022186	CGATAGATGT	C	377	PASS	ABCE1	CCDS34071.1	r.?	-	-	Del	intronic	D	146022186	146022197	9	50	699.716	-	-	1	1	1	ABCE1|CCDS34071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABCE1|CCDS34071.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	4	9	5	9	23	34	23	34	5	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721466820	4	148168030	GC	G	780	PASS	-	-	-	-	-	Del	-	D	148168030	148168033	1	44	699.716	-	-	2	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	3	10	3	13	24	33	24	33	3	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721467465	4	149935343	TA	T	780	PASS	-	-	-	-	-	Del	-	D	149935343	149935347	1	50	699.716	-	-	3	1	1	-	-	./.	0	0	0	0	4	18	4	18	0	0	./.	4	9	5	10	23	36	23	36	5	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721468183	4	152102888	G	GA	360	PASS	SH3D19	CCDS47144.1	r.?	-	-	Ins	intronic	I	152102888	152102896	1	15	319.333	-	-	7	1	1	SH3D19|CCDS47144.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SH3D19|CCDS47144.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	2	4	4	4	23	21	23	22	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721468385	4	152566263	TTTCATGAAACTGCGCTTATGAAAACAGCTGCCACCACATCAGACCTGCAGGGTGTGTCTGGTTCTTACTGACAGCAGGTTCAAAATATATA	T	377	PASS	FAM160A1	CCDS47146.1	r.?	-	-	Del	intronic	D	152566263	152566356	91	54	698.512	-	-	1	1	1	FAM160A1|CCDS47146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM160A1|CCDS47146.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	8	5	0	0	29	23	37	28	8	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721469547	4	156068362	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	156068362	156068369	1	10	266.111	-	-	6	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	1	4	2	28	31	28	33	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721469670	4	156391836	TC	T	360	PASS	-	-	-	-	-	Del	-	D	156391836	156391840	1	16	322.946	-	-	3	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	3	3	6	5	26	34	26	34	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721470703	4	159381248	TA	T	420	PASS	RXFP1	ENST00000460056	r.?	-	-	Del	intronic	D	159381248	159381253	1	18	376.77	-	-	4	1	1	RXFP1|ENST00000460056|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RXFP1|ENST00000460056|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	23	6	23	0	0	./.	2	5	3	6	26	37	26	37	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721471580	4	161535769	CT	C	300	PASS	-	-	-	-	-	Del	-	D	161535769	161535776	1	12	269.121	-	-	6	1	1	-	-	./.	0	0	0	0	14	26	14	26	0	0	./.	2	3	5	5	33	31	33	31	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721472051	4	162696645	GTTCGGTAGTGCCCTTGAATA	G	261	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162696645	162696668	20	28	484.419	-	-	1	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	6	2	5	30	43	31	44	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721472123	4	162889505	T	TA	840	PASS	FSTL5	CCDS3802.1	r.?	-	-	Ins	intronic	I	162889505	162889515	1	60	743.907	-	-	9	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	9	5	13	6	45	28	45	28	13	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721473982	4	167503529	AAGTT	A	507	PASS	-	-	-	-	-	Del	-	D	167503529	167503536	4	36	535.835	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	5	6	9	16	22	16	22	6	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721476693	4	174989834	TG	T	600	PASS	-	-	-	-	-	Del	-	D	174989834	174989838	1	27	537.641	-	-	3	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	8	9	11	40	41	40	41	9	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721477262	4	176551612	G	GA	480	PASS	GPM6A	CCDS3824.1	r.?	-	-	Ins	downstream	I	176551612	176551620	1	24	425.778	-	-	7	1	1	GPM6A|CCDS3824.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GPM6A|CCDS3824.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	20	19	20	0	0	./.	5	3	7	4	47	42	49	42	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721480417	4	184517133	GA	G	300	PASS	-	-	-	-	-	Del	-	D	184517133	184517138	1	10	269.121	-	-	4	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	1	4	1	6	21	24	21	24	1	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721484458	5	1360387	AT	A	540	PASS	ENSG00000227483	ENST00000446513	r.?	-	-	Del	intronic	D	1360387	1360389	1	28	483.826	-	-	1	1	1	ENSG00000227483|ENST00000446513|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227483|ENST00000446513|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	3	8	6	42	25	42	25	8	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721485114	5	3172801	AAGAT	A	329	PASS	-	-	-	-	-	Del	-	D	3172801	3172808	4	12	323.353	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	1	5	2	6	20	30	20	30	2	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721485691	5	4644812	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	4644812	4644819	1	14	371.225	-	-	6	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	1	6	2	7	28	30	28	31	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721487487	5	9913243	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	9913243	9913263	2	6	269.461	-	-	9	1	-	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	0	5	0	41	29	41	29	5	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721493002	5	23833358	GA	G	1020	PASS	-	-	-	-	-	Del	-	D	23833358	23833366	1	84	915.566	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	6	11	8	15	42	53	42	53	8	15	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721493726	5	25701113	T	TA	478	PASS	-	-	-	-	-	Ins	-	I	25701113	25701122	1	30	479.612	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	4	8	4	50	40	50	40	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494183	5	26714462	TA	T	420	PASS	-	-	-	-	-	Del	-	D	26714462	26714472	1	20	375.439	-	-	9	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	4	3	4	5	40	38	40	38	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494256	5	26838867	AT	A	538	PASS	-	-	-	-	-	Del	-	D	26838867	26838873	1	35	537.718	-	-	5	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	6	4	7	6	43	33	43	33	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494278	5	26905433	AAT	A	360	PASS	CDH9	CCDS3893.1	r.?	-	-	Del	intronic	D	26905433	26905436	2	15	323.353	-	-	1	1	1	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	4	3	4	38	33	38	33	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494281	5	26906232	A	AT	360	PASS	CDH9	CCDS3893.1	r.819_820insa	c.646_647insA	p.I216fs*14	Ins	frameshift	I	26906232	26906234	1	12	319.741	-	-	1	1	1	CDH9|CCDS3893.1|r.819_820insa|c.646_647insA|p.I216fs*14|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	CDH9|CCDS3893.1|r.819_820insa|c.646_647insA|p.I216fs*14|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	8	16	8	16	0	0	./.	5	1	7	3	39	42	41	43	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494361	5	27055212	G	GT	517	PASS	CDH9	ENST00000513289	r.?	-	-	Ins	intronic	I	27055212	27055219	1	28	477.805	-	-	6	1	1	CDH9|ENST00000513289|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH9|ENST00000513289|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	6	3	7	9	34	46	34	46	7	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494373	5	27113608	TTATGAAACAAGAGATGCTG	TTCTCC	435	PASS	CDH9	ENST00000513289	r.?	-	-	Complex	intronic	DI	27113609	27113627	19	72	0	-	-	0	1	1	CDH9|ENST00000513289|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	CDH9|ENST00000513289|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	7	8	0	0	40	36	41	37	7	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721494743	5	28060647	AC	A	418	PASS	-	-	-	-	-	Del	-	D	28060647	28060649	1	21	431.138	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	2	6	3	10	38	35	38	35	3	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721495014	5	28641828	GGTCTTGATTTCCTGACCTCGTGATCTGCCC	G	290	PASS	-	-	-	-	-	Del	-	D	28641828	28641860	30	32	535.912	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	7	3	6	26	41	26	42	3	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721495024	5	28686315	TA	T	420	PASS	-	-	-	-	-	Del	-	D	28686315	28686324	1	20	377.246	-	-	8	1	1	-	-	./.	0	0	0	0	26	28	26	28	0	0	./.	4	3	8	5	41	42	41	42	8	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721497360	5	33765819	G	GA	540	PASS	ADAMTS12	ENST00000504830	r.?	-	-	Ins	intronic	I	33765819	33765829	1	28	477.805	-	-	9	1	1	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	26	21	26	0	0	./.	3	6	4	7	34	48	34	48	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721500943	5	42404720	TCTCTTGAGCTAAA	T	435	PASS	-	-	-	-	-	Del	-	D	42404720	42404736	13	60	800.557	-	-	1	1	1	-	-	./.	0	0	0	0	21	27	21	27	0	0	./.	11	4	11	4	50	35	50	35	11	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721502641	5	50950048	AAGATTG	A	319	PASS	-	-	-	-	-	Del	-	D	50950048	50950057	6	42	591.61	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	5	6	5	6	39	36	39	36	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721502869	5	51587076	GT	G	300	PASS	-	-	-	-	-	Del	-	D	51587076	51587084	1	10	269.461	-	-	7	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	4	1	6	2	30	29	30	29	6	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721505453	5	58023102	TAC	T	300	PASS	RAB3C	CCDS3976.1	r.?	-	-	Del	intronic	D	58023102	58023120	2	6	268.257	-	-	8	1	1	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	5	0	5	0	42	27	42	27	5	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721511299	5	77983486	GCAACC	G	433	PASS	-	-	-	-	-	Del	-	D	77983486	77983495	5	30	485.03	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	4	5	5	5	17	16	17	17	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721515695	5	93210537	AG	A	360	PASS	MIR2277	CCDS4069.1	r.?	-	-	Del	intronic	D	93210537	93210539	1	15	323.353	-	-	1	1	1	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	4	5	5	18	12	18	12	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721519095	5	104348515	T	TGC	540	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Ins	intronic	I	104348515	104348516	2	30	473.591	-	-	0	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	5	4	5	29	35	30	35	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721519546	5	105857446	TAGGTCTTCTA	T	261	PASS	-	-	-	-	-	Del	-	D	105857446	105857460	10	24	482.02	-	-	1	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	7	2	7	2	35	35	35	35	7	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721523560	5	119028468	G	GTA	360	PASS	-	-	-	-	-	Ins	-	I	119028468	119028482	2	12	313.72	-	-	6	1	1	-	-	./.	0	0	0	0	16	19	18	19	0	0	./.	1	5	3	6	24	30	24	30	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721523786	5	119935855	A	AT	540	PASS	PRR16	CCDS4127.1	r.?	-	-	Ins	intronic	I	119935855	119935865	1	28	472.989	-	-	9	1	1	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	6	3	7	7	50	30	50	30	7	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721523880	5	120132440	GA	G	720	PASS	-	-	-	-	-	Del	-	D	120132440	120132443	1	48	646.707	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	7	7	10	28	35	28	35	7	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721526783	5	128680907	GGCTAT	G	478	PASS	-	-	-	-	-	Del	-	D	128680907	128680913	5	30	483.826	-	-	1	1	1	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	5	4	5	5	31	33	31	33	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721527882	5	132103775	TG	T	900	PASS	SEPT8	CCDS43360.1	r.?	-	-	Del	intronic	D	132103775	132103781	1	72	808.384	-	-	5	1	1	SEPT8|CCDS43360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPT8|CCDS43360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	8	9	10	30	22	30	22	9	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721529305	5	136838685	CT	C	480	PASS	SPOCK1	CCDS4191.1	r.?	-	-	Del	upstream	D	136838685	136838693	1	24	430.536	-	-	7	1	1	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	17	16	17	0	0	./.	3	5	4	6	24	34	24	34	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721530187	5	138784035	G	GA	300	PASS	DNAJC18	ENST00000515581	r.?	-	-	Ins	upstream	I	138784035	138784045	1	12	265.849	-	-	9	1	1	DNAJC18|ENST00000515581|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	DNAJC18|ENST00000515581|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	5	35	37	37	38	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721530880	5	140835991	T	TTA	354	PASS	PCDHGA12	CCDS47291.1	r.?	-	-	Ins	intronic	I	140835991	140835996	2	16	313.118	-	-	2	1	1	PCDHGA12|CCDS47291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDHGA12|CCDS47291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	3	6	28	33	30	33	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721531830	5	143710423	TC	T	418	PASS	KCTD16	CCDS34260.1	r.?	-	-	Del	intronic	D	143710423	143710427	1	21	431.138	-	-	3	1	1	KCTD16|CCDS34260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCTD16|CCDS34260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	6	2	7	2	25	42	25	42	7	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721532402	5	145424628	TG	T	300	PASS	SH3RF2	CCDS4280.1	r.?	-	-	Del	intronic	D	145424628	145424631	1	6	269.461	-	-	2	1	1	SH3RF2|CCDS4280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3RF2|CCDS4280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	12	24	12	0	0	./.	0	5	3	6	37	29	37	29	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721533268	5	148131790	C	CT	297	PASS	-	-	-	-	-	Ins	-	I	148131790	148131799	1	12	266.451	-	-	8	1	1	-	-	./.	0	0	0	0	20	18	20	19	0	0	./.	3	2	6	3	31	46	31	46	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721534711	5	152521716	TAGTAATGATAATAGCA	T	493	PASS	-	-	-	-	-	Del	-	D	152521716	152521735	16	70	916.168	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	13	4	13	4	48	32	49	32	14	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721534712	5	152523870	G	GAAAAAGA	725	PASS	-	-	-	-	-	Ins	-	I	152523870	152523880	7	182	1238.33	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	13	12	13	12	45	72	45	72	13	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721536037	5	155922912	TTGC	T	1165	PASS	SGCD	CCDS47325.1	r.?	-	-	Del	intronic	D	155922912	155922917	3	143	1185.63	-	-	1	1	1	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	10	12	12	12	40	32	40	32	12	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721537030	5	158280025	GTGGGTGGTCTACA	G	319	PASS	EBF1	CCDS4343.1	r.?	-	-	Del	intronic	D	158280025	158280042	13	40	592.815	-	-	1	1	1	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	7	4	0	0	56	55	56	55	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721540610	5	167538545	CCT	C	300	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167538545	167538559	2	6	267.655	-	-	6	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	5	0	5	0	51	31	51	31	5	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721541239	5	169252048	GA	G	586	PASS	DOCK2	CCDS4371.1	r.?	-	-	Del	intronic	D	169252048	169252052	1	238	1562.27	-	-	3	1	1	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	16	13	19	13	53	42	53	47	19	18	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721541371	5	169746059	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	169746059	169746072	2	12	269.461	-	-	6	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	2	3	2	4	41	43	41	43	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721542007	5	171412835	CA	C	389	PASS	FBXW11	CCDS34289.1	r.?	-	-	Del	intronic	D	171412835	171412838	1	20	377.246	-	-	2	1	1	FBXW11|CCDS34289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW11|CCDS34289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	11	27	11	0	0	./.	4	3	7	4	47	42	47	42	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721543124	5	173757207	AGATGGTGCAAGGTAGGAAGAGCTAG	A	261	PASS	-	-	-	-	-	Del	-	D	173757207	173757234	25	24	482.02	-	-	1	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	2	7	2	5	53	46	53	48	2	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721545039	5	177770014	GAGTACCGA	G	406	PASS	COL23A1	CCDS4436.1	r.?	-	-	Del	intronic	D	177770014	177770026	8	48	749.675	-	-	1	1	1	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL23A1|CCDS4436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	11	4	14	41	54	41	54	4	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721546177	5	179869523	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	179869523	179869540	2	10	269.461	-	-	8	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	1	4	1	4	39	44	39	44	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721547536	6	2649817	TA	T	360	PASS	-	-	-	-	-	Del	-	D	2649817	2649821	1	15	322.992	-	-	3	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	3	4	30	23	30	23	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721553843	6	18460857	GCT	G	300	PASS	RNF144B	CCDS34345.1	r.?	-	-	Del	intronic	D	18460857	18460872	2	12	269.662	-	-	7	1	1	RNF144B|CCDS34345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF144B|CCDS34345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	3	2	3	3	26	21	26	21	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721560554	6	33700955	CTG	C	780	PASS	IP6K3	CCDS34435.1	r.?	-	-	Del	intronic	D	33700955	33700962	2	44	699.315	-	-	3	1	1	IP6K3|CCDS34435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IP6K3|CCDS34435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	3	10	6	12	23	41	23	41	6	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721561425	6	35862828	CAAG	C	958	PASS	SRPK1	CCDS47415.1	r.?	-	-	Del	intronic	D	35862828	35862834	3	90	909.625	-	-	1	1	1	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	9	8	9	11	26	44	26	44	9	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721563341	6	41408261	AATTTTTGT	A	290	PASS	-	-	-	-	-	Del	-	D	41408261	41408277	8	35	536.313	-	-	1	1	1	-	-	./.	0	0	0	0	19	6	19	6	0	0	./.	4	6	7	6	28	17	28	17	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721563674	6	42252187	AGCATTCAACAGTGAAAAATGTGTCGCCTGTCACACATTCTCAGCTGAGGTAGAACAAGGTGACTCTTACTTTTCACTGAAATAGCACTTCTCTTTCTTTTTT	A	261	PASS	TRERF1	CCDS4867.1	r.?	-	-	Del	intronic	D	42252187	42252297	102	28	479.371	-	-	1	1	1	TRERF1|CCDS4867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRERF1|CCDS4867.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	3	6	0	0	29	23	32	29	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721564772	6	45228306	G	GTC	360	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Ins	intronic	I	45228306	45228313	2	16	316.369	-	-	3	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	3	3	3	3	33	33	33	33	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721565870	6	48598120	TCA	T	780	PASS	-	-	-	-	-	Del	-	D	48598120	48598125	2	50	698.712	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	9	5	9	33	28	33	28	5	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721566887	6	51858759	G	GA	300	PASS	PKHD1	CCDS4935.1	r.?	-	-	Ins	intronic	I	51858759	51858769	1	12	263.039	-	-	9	1	1	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	28	18	28	0	0	./.	3	2	4	2	28	38	29	38	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721567610	6	53848603	C	CT	360	PASS	C6orf142	ENST00000505762	r.?	-	-	Ins	intronic	I	53848603	53848612	1	16	316.972	-	-	8	1	1	C6orf142|ENST00000505762|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf142|ENST00000505762|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	3	3	3	5	44	36	44	36	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721570535	6	63035206	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	63035206	63035215	1	12	265.447	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	2	4	29	31	30	32	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721571451	6	65831481	TG	T	360	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	65831481	65831488	1	15	323.594	-	-	6	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	2	4	4	4	40	30	40	30	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721572818	6	69199674	GATTTTCCA	G	261	PASS	-	-	-	-	-	Del	-	D	69199674	69199688	8	30	485.391	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	5	4	7	26	39	26	39	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721572893	6	69460480	A	AT	300	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	69460480	69460487	1	10	266.652	-	-	6	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	20	16	0	0	./.	1	4	2	5	18	41	18	42	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721574126	6	73367973	AT	A	540	PASS	KCNQ5	CCDS4976.1	r.?	-	-	Del	intronic	D	73367973	73367979	1	10	485.391	-	-	5	1	1	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	1	22	1	22	0	0	./.	0	9	0	9	2	35	2	35	0	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721577787	6	85932778	T	TA	449	PASS	-	-	-	-	-	Ins	-	I	85932778	85932786	1	24	426.04	-	-	7	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	5	3	8	4	29	19	29	19	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721578414	6	88217656	CTTCAG	C	449	PASS	SLC35A1	CCDS5010.1	r.?	-	-	Del	intronic	D	88217656	88217664	5	25	430.255	-	-	1	1	1	SLC35A1|CCDS5010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35A1|CCDS5010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	4	4	5	5	25	24	25	24	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721581409	6	98642773	TG	T	360	PASS	-	-	-	-	-	Del	-	D	98642773	98642779	1	15	322.992	-	-	5	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	2	4	3	4	26	16	26	16	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721585502	6	111776169	G	GT	300	PASS	REV3L	CCDS5091.2	r.?	-	-	Ins	intronic	I	111776169	111776176	1	12	265.447	-	-	6	1	1	REV3L|CCDS5091.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	REV3L|CCDS5091.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	20	0	0	./.	2	3	2	3	25	20	25	21	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721587423	6	118825681	ATC	A	540	PASS	C6orf204	CCDS43498.1	r.?	-	-	Del	intronic	D	118825681	118825686	2	28	485.391	-	-	2	1	1	C6orf204|CCDS43498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf204|CCDS43498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	3	7	4	24	22	24	22	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721588367	6	121692593	TCAAGGAGGTGGGTTTTTGAAAAGATTAACAAAAGAGCTAGACCACTAGCCAGACTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGACACACA	T	261	PASS	-	-	-	-	-	Del	-	D	121692593	121692691	94	28	484.789	-	-	1	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	3	6	0	0	24	19	27	25	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721590029	6	127796017	TATGG	T	476	PASS	C6orf174	CCDS34531.1	r.?	-	-	Del	intronic	D	127796017	127796024	4	20	535.109	-	-	1	1	1	C6orf174|CCDS34531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C6orf174|CCDS34531.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	9	1	12	2	34	15	34	15	12	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721590326	6	129012799	CTT	C	300	PASS	-	-	-	-	-	Del	-	D	129012799	129012802	2	12	268.458	-	-	2	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	3	2	4	2	31	31	31	31	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721590695	6	130048860	ATGATAAAAT	A	377	PASS	-	-	-	-	-	Del	-	D	130048860	130048872	9	56	700.519	-	-	1	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	7	6	9	6	29	20	29	20	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721591259	6	131968945	GT	G	780	PASS	ENPP3	CCDS5148.1	r.?	-	-	Del	intronic	D	131968945	131968950	1	50	700.519	-	-	4	1	1	ENPP3|CCDS5148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENPP3|CCDS5148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	9	4	10	6	33	19	33	19	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721591899	6	134135346	TCAGGAC	T	261	PASS	-	-	-	-	-	Del	-	D	134135346	134135353	6	30	485.391	-	-	1	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	5	4	5	5	17	20	18	20	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721596038	6	149613458	ACT	A	480	PASS	-	-	-	-	-	Del	-	D	149613458	149613463	2	25	431.459	-	-	2	1	1	-	-	./.	0	0	0	0	8	22	8	22	0	0	./.	4	4	4	6	30	39	30	39	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721597761	6	154232605	C	CCAA	300	PASS	-	-	-	-	-	Ins	-	I	154232605	154232612	3	10	260.631	-	-	2	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	4	1	4	1	27	39	27	39	4	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721602029	6	166642322	AT	A	840	PASS	-	-	-	-	-	Del	-	D	166642322	166642325	1	63	753.247	-	-	2	1	1	-	-	./.	0	0	0	0	25	18	25	18	0	0	./.	6	8	6	9	23	37	23	37	6	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721608925	7	13234661	GCCTCCCGAGTAGCTGGGA	G	377	PASS	-	-	-	-	-	Del	-	D	13234661	13234681	18	56	698.216	-	-	1	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	6	7	5	6	21	25	22	26	6	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721609015	7	13439817	CA	C	689	PASS	-	-	-	-	-	Del	-	D	13439817	13439823	1	48	646.128	-	-	5	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	7	5	10	6	41	38	41	38	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721609410	7	14395534	GACTTTTTTTGGTTGGTAGGCTATTAATTACTGCCTCAATTTCAGA	G	261	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14395534	14395584	45	30	482.64	-	-	1	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	4	5	3	0	35	25	36	30	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721611078	7	19080212	TGGATGTATGATGAGA	T	435	PASS	-	-	-	-	-	Del	-	D	19080212	19080230	15	70	807.811	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	9	6	9	6	43	32	43	32	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721612634	7	23239758	G	GT	300	PASS	NUPL2	CCDS5379.1	r.?	-	-	Ins	intronic	I	23239758	23239767	1	12	258.634	-	-	8	1	-	NUPL2|CCDS5379.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUPL2|CCDS5379.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	19	25	19	0	0	./.	3	2	4	2	52	43	53	43	4	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721612879	7	23649448	TCCAGC	T	896	PASS	CCDC126	CCDS5384.1	r.?	-	-	Del	intronic	D	23649448	23649455	5	88	916.201	-	-	1	1	1	CCDC126|CCDS5384.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC126|CCDS5384.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	10	7	13	8	30	37	30	37	13	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721615220	7	29680118	TTGGA	T	507	PASS	-	-	-	-	-	Del	-	D	29680118	29680123	4	27	536.534	-	-	1	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	8	2	11	3	37	17	37	17	11	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721617376	7	36185551	CACATAAATATAGTCA	C	261	PASS	-	-	-	-	-	Del	-	D	36185551	36185569	15	30	485.048	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	4	5	4	29	25	29	25	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721618336	7	38676494	CG	C	300	PASS	-	-	-	-	-	Del	-	D	38676494	38676498	1	10	269.471	-	-	3	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	1	4	1	36	23	36	23	4	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721619331	7	41297197	TAGTGAAAAGAG	T	551	PASS	-	-	-	-	-	Del	-	D	41297197	41297212	11	110	1023.99	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	9	10	8	11	30	28	30	28	9	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721621805	7	48821931	CACTTTCAGGA	C	348	PASS	-	-	-	-	-	Del	-	D	48821931	48821943	10	45	646.73	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	8	4	9	5	33	27	33	27	9	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721623595	7	54134964	CA	C	420	PASS	-	-	-	-	-	Del	-	D	54134964	54134968	1	20	377.259	-	-	3	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	4	3	4	6	35	25	35	25	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721625470	7	57789473	TTAGA	T	252	PASS	-	-	-	-	-	Del	-	D	57789473	57789478	4	12	269.471	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	6	2	30	31	30	31	6	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721625783	7	61300353	GC	G	313	PASS	-	-	-	-	-	Del	-	D	61300353	61300355	1	40	589.826	-	-	1	1	1	-	-	./.	0	0	0	0	36	18	36	18	0	0	./.	7	4	8	4	86	68	86	68	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721626464	7	62418768	AT	A	720	PASS	-	-	-	-	-	Del	-	D	62418768	62418773	1	48	646.73	-	-	4	1	1	-	-	./.	0	0	0	0	22	28	22	28	0	0	./.	7	5	11	9	41	31	41	31	11	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721629587	7	68557197	AG	A	360	PASS	-	-	-	-	-	Del	-	D	68557197	68557199	1	15	323.365	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	2	4	2	4	32	25	32	25	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721634673	7	82437581	TATTAA	T	360	PASS	PCLO	CCDS47630.1	r.?	-	-	Del	intronic	D	82437581	82437593	5	15	323.365	-	-	2	1	1	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCLO|CCDS47630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	2	4	3	4	23	26	23	26	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721635602	7	84870523	TACG	T	300	PASS	-	-	-	-	-	Del	-	D	84870523	84870527	3	10	269.471	-	-	1	1	1	-	-	./.	0	0	0	0	0	17	0	17	0	0	./.	1	4	2	6	11	32	11	32	2	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721636337	7	86896584	AAGGAAATTAGC	A	580	PASS	-	-	-	-	-	Del	-	D	86896584	86896598	11	117	1076.08	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	12	8	13	10	41	31	41	31	13	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721636456	7	87325524	GAATAACATTTCTTC	G	348	PASS	ABCB1	CCDS5608.1	r.?	-	-	Del	intronic	D	87325524	87325541	14	45	646.73	-	-	1	1	1	ABCB1|CCDS5608.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ABCB1|CCDS5608.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	8	4	8	43	62	43	62	4	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721637341	7	89924619	C	CA	720	PASS	C7orf63	CCDS43613.1	r.?	-	-	Ins	intronic	I	89924619	89924622	1	45	638.302	-	-	2	1	1	C7orf63|CCDS43613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf63|CCDS43613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	4	8	7	14	38	41	38	41	7	14	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721639110	7	95423833	AGAC	A	1318	PASS	DYNC1I1	CCDS5644.1	r.?	-	-	Del	intronic	D	95423833	95423840	3	150	1238.96	-	-	2	1	1	DYNC1I1|CCDS5644.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DYNC1I1|CCDS5644.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	9	14	13	18	37	38	37	38	13	18	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721639534	7	96576545	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	96576545	96576553	1	15	319.753	-	-	7	1	-	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	4	2	8	2	41	37	42	38	8	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721641764	7	101171093	AG	A	600	PASS	EMID2	ENST00000397927	r.?	-	-	Del	intronic	D	101171093	101171098	1	35	537.136	-	-	4	1	1	EMID2|ENST00000397927|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EMID2|ENST00000397927|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	6	4	8	31	51	31	51	4	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721643179	7	104222022	CTGCC	CTA	449	PASS	LHFPL3	ENST00000424859	r.?	-	-	Complex	intronic	DI	104222023	104222026	4	25	0	-	-	0	1	1	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	4	0	0	42	43	42	43	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721644235	7	106506327	GT	G	300	PASS	PIK3CG	CCDS5739.1	r.?	-	-	Del	intronic	D	106506327	106506332	1	12	269.471	-	-	4	1	1	PIK3CG|CCDS5739.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PIK3CG|CCDS5739.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	28	14	28	0	0	./.	3	2	5	3	58	52	58	52	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721645405	7	109519985	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	109519985	109519995	1	20	530.513	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	9	1	10	6	57	39	58	40	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721646850	7	114013159	TG	T	1169	PASS	FOXP2	ENST00000324462	r.?	-	-	Del	intronic	D	114013159	114013161	1	121	1076.08	-	-	1	1	1	FOXP2|ENST00000324462|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FOXP2|ENST00000324462|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	10	10	14	16	29	32	29	32	14	16	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721646851	7	114014738	T	TC	540	PASS	FOXP2	ENST00000324462	r.?	-	-	Ins	intronic	I	114014738	114014746	1	28	479.629	-	-	7	1	1	FOXP2|ENST00000324462|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FOXP2|ENST00000324462|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	6	3	7	3	37	37	37	38	7	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721647487	7	115874929	AATACT	AG	269	PASS	TES	CCDS5763.1	r.?	-	-	Complex	intronic	DI	115874930	115874934	5	10	0	-	-	0	1	1	TES|CCDS5763.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	TES|CCDS5763.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	1	4	0	0	39	53	39	53	1	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721648369	7	118673336	GT	G	420	PASS	-	-	-	-	-	Del	-	D	118673336	118673340	1	20	377.259	-	-	3	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	4	3	6	26	36	26	36	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721648911	7	120840350	AATT	A	656	PASS	C7orf58	CCDS34739.1	r.?	-	-	Del	intronic	D	120840350	120840354	3	54	700.625	-	-	1	1	1	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	5	8	5	10	32	37	32	37	5	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721648912	7	120840712	AAAAG	A	538	PASS	C7orf58	CCDS34739.1	r.?	-	-	Del	intronic	D	120840712	120840722	4	27	538.942	-	-	2	1	1	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	8	2	10	3	34	35	34	35	10	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721651476	7	127966807	AC	A	1049	PASS	RBM28	CCDS5801.1	r.?	-	-	Del	intronic	D	127966807	127966810	1	100	969.494	-	-	2	1	1	RBM28|CCDS5801.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM28|CCDS5801.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	9	9	11	13	32	37	32	37	11	13	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721652755	7	130337665	CAAAT	C	269	PASS	COPG2	ENST00000330992	r.?	-	-	Del	intronic	D	130337665	130337671	4	12	269.471	-	-	1	1	1	COPG2|ENST00000330992|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COPG2|ENST00000330992|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	4	3	47	36	47	36	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721654073	7	133774645	TA	T	600	PASS	-	-	-	-	-	Del	-	D	133774645	133774649	1	27	537.738	-	-	3	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	8	2	9	4	29	30	29	30	9	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721654706	7	135361577	G	GT	300	PASS	SLC13A4	CCDS5840.1	r.?	-	-	Ins	downstream	I	135361577	135361578	1	12	266.461	-	-	0	1	1	SLC13A4|CCDS5840.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SLC13A4|CCDS5840.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	27	17	27	0	0	./.	3	2	5	4	41	39	42	40	5	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721655423	7	137444602	G	GA	264	PASS	DGKI	CCDS5845.1	r.?	-	-	Ins	intronic	I	137444602	137444612	1	12	266.461	-	-	9	1	1	DGKI|CCDS5845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DGKI|CCDS5845.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	2	29	34	29	35	3	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721658433	7	145324090	TGCCTTCTTGTTTCTAAAACG	T	522	PASS	-	-	-	-	-	Del	-	D	145324090	145324116	20	99	970.096	-	-	1	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	10	8	9	4	30	20	31	24	10	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721658840	7	146611563	A	AT	420	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	146611563	146611571	1	18	371.841	-	-	7	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	14	0	0	./.	2	5	4	7	33	41	34	41	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721660185	7	150077260	AACTGTTCCCATGTTCATCTGTAAAATGAAGAGATTAGATGGCAGTTGTCTCCTTTCAGCTTGAAGGTTCATGCTTCCGTGCTTCAAATCTGTTTTGTACTGAAATTTCTTTTATTTAAGTGTTCCCTTATGACAGTTTTTATTAATGGATTACTGTGTGTGGAGCCTGT	A	377	PASS	ZNF775	CCDS43678.1	r.?	-	-	Del	intronic	D	150077260	150077434	169	54	695.808	-	-	1	1	1	ZNF775|CCDS43678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF775|CCDS43678.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	20	22	20	0	0	./.	5	8	0	0	8	14	13	22	5	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721660305	7	150315989	G	GCTTT	536	PASS	-	-	-	-	-	Ins	-	I	150315989	150315994	4	40	566.346	-	-	1	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	4	7	9	8	24	19	25	19	9	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721664218	8	2985846	TA	T	600	PASS	CSMD1	ENST00000318252	r.?	-	-	Del	intronic	D	2985846	2985848	1	27	539.456	-	-	1	1	1	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD1|ENST00000318252|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	8	2	8	3	35	22	35	22	8	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721665563	8	6104392	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	6104392	6104400	1	18	373.405	-	-	7	1	1	-	-	./.	0	0	0	0	25	20	26	20	0	0	./.	5	2	8	4	32	29	33	29	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721665767	8	6503078	CTT	C	480	PASS	MCPH1	CCDS43689.1	r.5085_5086delUU	c.?	p.?	Del	3'UTR variant	D	6503078	6503082	2	16	429.156	-	-	3	1	1	MCPH1|CCDS43689.1|r.5085_5086delUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MCPH1|CCDS43689.1|r.5085_5086delUU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	21	14	21	0	0	./.	7	1	10	3	37	21	37	21	10	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721666385	8	8714266	CTGGTCAATTAATGAGTTAA	C	278	PASS	MFHAS1	CCDS34844.1	r.?	-	-	Del	intronic	D	8714266	8714289	19	35	538.854	-	-	1	1	1	MFHAS1|CCDS34844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MFHAS1|CCDS34844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	6	4	4	4	34	30	36	30	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721669987	8	17700246	GCTGTTTAAAAACA	G	319	PASS	-	-	-	-	-	Del	-	D	17700246	17700262	13	42	592.799	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	5	7	5	22	18	22	18	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721672245	8	24203619	AT	A	540	PASS	ADAM28	CCDS34865.1	r.?	-	-	Del	intronic	D	24203619	24203625	1	28	484.908	-	-	5	1	1	ADAM28|CCDS34865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM28|CCDS34865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	3	6	5	7	28	35	28	35	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721678351	8	40440964	C	CA	660	PASS	ZMAT4	CCDS34885.1	r.?	-	-	Ins	intronic	I	40440964	40440970	1	30	584.972	-	-	5	1	1	ZMAT4|CCDS34885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZMAT4|CCDS34885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	24	21	24	0	0	./.	2	9	2	10	34	39	34	39	2	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721678500	8	40806085	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	40806085	40806086	1	12	266.717	-	-	0	1	1	-	-	./.	0	0	0	0	20	18	22	18	0	0	./.	2	3	4	4	23	33	23	33	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721679671	8	47028586	TC	T	600	PASS	-	-	-	-	-	Del	-	D	47028586	47028588	1	35	538.854	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	6	4	7	5	28	26	28	26	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721680270	8	49728663	CTGCAA	C	627	PASS	-	-	-	-	-	Del	-	D	49728663	49728671	5	45	646.143	-	-	1	1	1	-	-	./.	0	0	0	0	27	15	27	15	0	0	./.	8	4	9	4	43	35	43	35	9	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721681690	8	54197583	GCTTTTCGGTATACGCACAC	G	464	PASS	-	-	-	-	-	Del	-	D	54197583	54197603	19	77	863.129	-	-	1	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	10	6	9	6	26	24	27	24	10	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721683693	8	61008905	CA	C	360	PASS	-	-	-	-	-	Del	-	D	61008905	61008910	1	12	323.673	-	-	4	1	1	-	-	./.	0	0	0	0	18	22	18	22	0	0	./.	5	1	8	2	33	33	33	33	8	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721683818	8	61344924	CAAAACAAATTAAATGT	C	348	PASS	-	-	-	-	-	Del	-	D	61344924	61344945	16	40	647.347	-	-	1	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	9	3	0	0	31	32	31	32	9	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721684533	8	63744520	T	TA	300	PASS	NKAIN3	ENST00000328472	r.?	-	-	Ins	intronic	I	63744520	63744528	1	10	266.717	-	-	7	1	1	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	1	4	3	5	33	35	35	35	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721687496	8	72746041	GT	G	300	PASS	-	-	-	-	-	Del	-	D	72746041	72746043	1	10	268.524	-	-	1	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	4	1	6	3	46	37	46	37	6	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721687632	8	73282510	GACTGGCTATTATCA	G	348	PASS	-	-	-	-	-	Del	-	D	73282510	73282527	14	45	646.745	-	-	1	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	8	4	8	4	32	44	32	44	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721689113	8	77238123	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	77238123	77238143	2	16	321.265	-	-	9	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	3	3	3	3	42	36	42	36	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721689324	8	77995007	C	CA	833	PASS	-	-	-	-	-	Ins	-	I	77995007	77995008	1	60	795.938	-	-	0	1	1	-	-	./.	0	0	0	0	6	27	6	27	0	0	./.	4	11	7	10	22	43	22	44	7	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721689506	8	78553745	T	TGAAATAGTATG	435	PASS	-	-	-	-	-	Ins	-	I	78553745	78553759	11	66	708.639	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	10	5	8	5	45	39	49	39	10	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721690143	8	80499836	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	80499836	80499845	1	12	313.438	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	1	8	4	35	46	35	46	8	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721691203	8	83726229	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	83726229	83726239	1	24	426.748	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	16	16	0	0	./.	3	5	5	5	45	34	45	36	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721693012	8	89088355	A	AT	360	PASS	MMP16	CCDS6246.1	r.?	-	-	Ins	intronic	I	89088355	89088364	1	16	314.642	-	-	8	1	1	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	3	3	4	3	37	28	38	28	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721693801	8	91504953	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	91504953	91504963	1	12	265.513	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	19	0	0	./.	3	2	4	3	49	54	49	56	4	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721694186	8	92874516	TTTTGTTAAATCATAGTTGAATACATCTGGAAATCAAAACTTAGAAGAAAGGAAGACATGGCATTTTCTCTTAAGAGAGAGTGCTAAAATGTTTCTTCAAATGGGGTAGAGGAGAAAACGTGGAAGTTATAAGATTTTGATTACTTTTAGTGGTCTTTCCTCTGGACGC	T	348	PASS	-	-	-	-	-	Del	-	D	92874516	92874689	168	48	647.347	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	7	0	0	34	27	39	34	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721695782	8	96772397	AGTTTGAACTTTCTAAATATTAATGAAAGGAATGAATTAACTAATATTTCTGCCTCATATTATCACCAAAAGAAAAGTGACTGGTGCCCAGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGTGGATCACGAGATCAGGGGTTCAAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACGAAAAATACAAAAATTAGCCAAGTGTGGTGGCAGGTGCCTGTAATCCCAGCTACCCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTG	A	261	PASS	-	-	-	-	-	Del	-	D	96772397	96772687	288	28	485.51	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	3	6	0	0	40	43	43	49	3	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721696509	8	98703489	G	GA	300	PASS	MTDH	CCDS6274.1	r.?	-	-	Ins	intronic	I	98703489	98703499	1	12	266.717	-	-	9	1	1	MTDH|CCDS6274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTDH|CCDS6274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	2	4	66	52	67	53	2	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721699801	8	106566839	CT	C	480	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Del	intronic	D	106566839	106566843	1	25	431.564	-	-	3	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	4	4	7	4	53	51	53	51	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721700604	8	108627368	ATCTGATAATTCTT	A	580	PASS	-	-	-	-	-	Del	-	D	108627368	108627385	13	120	1077.71	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	9	11	12	12	50	34	50	34	12	12	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721700655	8	108750703	TCATGTTAAAATGT	TATA	319	PASS	-	-	-	-	-	Complex	-	DI	108750704	108750716	13	42	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	5	6	0	0	52	56	52	56	5	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721700972	8	109699161	AG	A	689	PASS	-	-	-	-	-	Del	-	D	109699161	109699163	1	45	646.143	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	4	8	7	10	54	55	54	55	7	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721701312	8	110534246	TCCTCCCCTCATTAATATGACTGCTGTGTTTTG	T	435	PASS	PKHD1L1	CCDS47911.1	r.?	-	-	Del	intronic	D	110534246	110534280	32	72	809.183	-	-	1	1	1	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	8	7	5	2	40	32	43	37	8	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721701603	8	111369465	CTAGATTGGCTAAAACCAATA	C	290	PASS	-	-	-	-	-	Del	-	D	111369465	111369489	20	36	539.456	-	-	1	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	5	5	4	5	54	41	55	41	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721701941	8	112291309	TA	T	300	PASS	-	-	-	-	-	Del	-	D	112291309	112291319	1	12	267.32	-	-	9	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	2	3	2	3	29	52	29	52	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721702198	8	112873272	GC	G	480	PASS	-	-	-	-	-	Del	-	D	112873272	112873274	1	24	431.565	-	-	1	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	3	5	7	40	56	40	56	5	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721702674	8	114172172	AAT	A	360	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	114172172	114172189	2	16	318.857	-	-	8	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	3	3	3	52	57	52	57	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721703293	8	115721469	TAAATA	T	540	PASS	-	-	-	-	-	Del	-	D	115721469	115721477	5	18	485.51	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	1	8	2	10	43	51	43	51	2	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721703342	8	115900167	TA	T	540	PASS	-	-	-	-	-	Del	-	D	115900167	115900175	1	28	485.51	-	-	7	1	1	-	-	./.	0	0	0	0	20	6	20	6	0	0	./.	6	3	7	4	45	29	45	29	7	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721707295	8	125030781	TATGCT	TGA	383	PASS	FER1L6	CCDS43767.1	r.?	-	-	Complex	intronic	DI	125030782	125030786	5	35	0	-	-	0	1	1	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	24	22	24	22	0	0	./.	4	6	0	0	57	49	57	49	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721708826	8	128552153	AG	A	540	PASS	-	-	-	-	-	Del	-	D	128552153	128552155	1	28	485.51	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	3	6	9	7	42	70	42	70	9	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721710552	8	133290619	GAAACATCTACCAGTGCTGCGTCGACACATGCTTCCTGGTATTCCTGTCTGAAAGAGCAGCTTCCTATGGGCTAGTGATCCTTGGGCAGTAAGACCAACTCTCAACTTTCCCACGACAGTTTATTTTGATGTAAGTGGAAAGGGACCCTTGAGTCAGACCTTCTGAACACAGTTCGATGGGACTGAAAGTCCATAAGTAGGACTCTGGGGTGTT	GACAATGTCCACAATC	377	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Complex	intronic	DI	133290620	133290832	213	36	0	-	-	0	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	11	2	0	0	48	31	59	33	11	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721710623	8	133555155	TTACA	T	720	PASS	-	-	-	-	-	Del	-	D	133555155	133555161	4	48	647.347	-	-	1	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	5	7	5	9	39	47	39	47	5	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721712580	8	138747164	T	TAACAG	778	PASS	-	-	-	-	-	Ins	-	I	138747164	138747175	5	64	713.094	-	-	2	1	1	-	-	./.	0	0	0	0	21	12	22	12	0	0	./.	7	7	7	7	59	53	59	54	7	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721712976	8	139787989	CACAACTT	C	261	PASS	COL22A1	CCDS6376.1	r.?	-	-	Del	intronic	D	139787989	139788000	7	28	485.51	-	-	1	1	1	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	6	4	7	15	26	15	26	4	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721717119	9	4892539	C	CA	1320	PASS	-	-	-	-	-	Ins	-	I	4892539	4892546	1	119	1176.02	-	-	6	1	1	-	-	./.	0	0	0	0	23	6	23	6	0	0	./.	16	6	22	9	58	19	58	19	22	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721718913	9	9361524	C	CT	300	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	9361524	9361534	1	12	258.848	-	-	9	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	3	40	48	40	49	2	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721719561	9	10927973	TTTCCTAAGGATTGGAGCTATGA	T	522	PASS	-	-	-	-	-	Del	-	D	10927973	10927998	22	99	973.034	-	-	1	1	1	-	-	./.	0	0	0	0	28	10	28	10	0	0	./.	8	10	5	9	37	37	40	38	8	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721722447	9	17888312	TC	T	480	PASS	-	-	-	-	-	Del	-	D	17888312	17888316	1	25	432.46	-	-	3	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	4	4	4	4	29	31	29	31	4	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721723406	9	20662308	CG	C	300	PASS	KIAA1797	CCDS34993.1	r.?	-	-	Del	intronic	D	20662308	20662310	1	6	270.287	-	-	1	1	1	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	0	5	2	5	17	25	17	25	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721725310	9	27924909	GC	G	540	PASS	-	-	-	-	-	Del	-	D	27924909	27924911	1	28	482.905	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	3	6	3	8	27	31	27	31	3	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721735584	9	75678958	TC	T	300	PASS	ALDH1A1	ENST00000419959	r.?	-	-	Del	intronic	D	75678958	75678960	1	6	269.083	-	-	1	1	1	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ALDH1A1|ENST00000419959|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	5	0	7	0	26	18	26	18	7	0	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721736327	9	77774955	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	77774955	77774957	1	18	359.136	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	2	5	2	5	29	37	29	37	2	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721736441	9	77992686	TG	T	480	PASS	-	-	-	-	-	Del	-	D	77992686	77992688	1	25	432.46	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	4	4	5	29	28	29	28	4	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721737768	9	82009958	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	82009958	82009968	1	20	371.178	-	-	9	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	3	4	3	4	29	42	29	42	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721738670	9	84671767	AC	A	300	PASS	FAM75B	ENST00000376458	r.?	-	-	Del	downstream	D	84671767	84671774	1	6	269.685	-	-	6	1	1	FAM75B|ENST00000376458|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAM75B|ENST00000376458|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	10	10	10	0	0	./.	0	5	3	5	15	23	15	23	3	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721742622	9	97004987	ATGTC	A	567	PASS	-	-	-	-	-	Del	-	D	97004987	97004992	4	36	591.622	-	-	1	1	1	-	-	./.	0	0	0	0	29	33	29	33	0	0	./.	3	8	3	10	27	31	27	31	3	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721745619	9	106071698	AAT	A	360	PASS	-	-	-	-	-	Del	-	D	106071698	106071713	2	16	324.345	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	3	4	33	33	33	33	3	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721746440	9	108694116	ATTTTCCTT	A	348	PASS	-	-	-	-	-	Del	-	D	108694116	108694126	8	48	648.088	-	-	1	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	5	7	6	11	29	38	29	38	6	11	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721750682	9	121198725	TTGTG	T	658	PASS	-	-	-	-	-	Del	-	D	121198725	121198731	4	45	648.69	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	8	4	10	8	28	23	28	23	10	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721751136	9	122895397	GAAACTCCCATTTTTA	G	261	PASS	-	-	-	-	-	Del	-	D	122895397	122895417	15	28	481.099	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	3	6	3	7	16	27	16	27	3	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721752507	9	127588827	TTCATTTGAAATTTTAGTTTC	T	406	PASS	-	-	-	-	-	Del	-	D	127588827	127588850	20	63	753.192	-	-	1	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	8	6	9	6	36	35	36	35	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721753517	9	130584419	CT	C	718	PASS	ENG	CCDS6880.1	r.?	-	-	Del	intronic	D	130584419	130584427	1	56	702.747	-	-	7	1	1	ENG|CCDS6880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENG|CCDS6880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	6	7	12	10	39	28	39	28	12	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721754223	9	132401300	CCT	C	360	PASS	ASB6	CCDS6924.1	r.?	-	-	Del	intronic	D	132401300	132401307	2	15	324.345	-	-	3	1	1	ASB6|CCDS6924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB6|CCDS6924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	24	18	24	0	0	./.	4	2	7	2	26	16	26	16	7	2	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721758303	X	10362291	GCTGATGATCTAAACCC	G	290	PASS	-	-	-	-	-	Del	-	D	10362291	10362312	16	36	543.097	-	-	1	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	5	5	5	5	18	19	18	19	5	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721758835	X	14200790	TC	T	720	PASS	-	-	-	-	-	Del	-	D	14200790	14200792	1	48	651.837	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	7	5	9	6	15	11	15	11	9	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721758867	X	14654270	G	GAAA	420	PASS	GLRA2	CCDS48085.1	r.?	-	-	Ins	intronic	I	14654270	14654277	3	18	367.946	-	-	6	1	1	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GLRA2|CCDS48085.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	5	2	5	3	19	17	20	17	5	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721761796	X	36150577	GCATTTTCAACAAGCTTC	G	348	PASS	CXorf59	CCDS14238.1	r.?	-	-	Del	intronic	D	36150577	36150600	17	48	652.439	-	-	1	1	1	CXorf59|CCDS14238.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CXorf59|CCDS14238.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	7	5	7	5	20	10	20	10	7	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721762035	X	38879344	TCCGTAGCTCACAGCTGCTGAACCCAAATCCCTACTTGCCCC	T	319	PASS	-	-	-	-	-	Del	-	D	38879344	38879387	41	36	598.069	-	-	1	1	1	-	-	./.	0	0	0	0	5	15	5	15	0	0	./.	8	3	1	2	8	6	15	7	8	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721762667	X	43468533	GT	G	360	PASS	-	-	-	-	-	Del	-	D	43468533	43468539	1	16	323.209	-	-	5	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	3	3	3	3	14	13	14	13	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721762847	X	44587468	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	44587468	44587478	1	10	265.829	-	-	9	1	1	-	-	./.	0	0	0	0	9	5	9	6	0	0	./.	4	1	4	1	23	19	23	24	4	1	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721762918	X	44982102	CCAGTTATTAATCCCTTGT	C	319	PASS	-	-	-	-	-	Del	-	D	44982102	44982124	18	36	598.069	-	-	1	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	3	8	3	8	17	18	17	18	3	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721763062	X	45744972	TC	T	360	PASS	-	-	-	-	-	Del	-	D	45744972	45744974	1	16	326.219	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	3	3	3	3	14	15	14	15	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721764871	X	64059481	CA	C	300	PASS	-	-	-	-	-	Del	-	D	64059481	64059486	1	12	270.645	-	-	4	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	3	2	4	6	23	15	23	15	4	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721766107	X	73739980	TTGA	T	327	PASS	SLC16A2	CCDS14426.1	r.?	-	-	Del	intronic	D	73739980	73739996	3	14	380.589	-	-	5	1	1	SLC16A2|CCDS14426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC16A2|CCDS14426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	6	1	9	12	29	12	29	1	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721766871	X	79556240	TATCCATTCAT	TATG	435	PASS	-	-	-	-	-	Complex	-	DI	79556241	79556250	10	70	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	6	9	0	0	13	14	14	14	6	9	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721767024	X	80736479	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	80736479	80736487	1	12	322.005	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	5	1	4	14	14	14	14	1	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721768504	X	89891275	AC	A	300	PASS	-	-	-	-	-	Del	-	D	89891275	89891280	1	12	271.85	-	-	4	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	2	3	3	3	17	19	17	19	3	3	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721768848	X	92464342	TAA	T	600	PASS	-	-	-	-	-	Del	-	D	92464342	92464349	2	36	543.699	-	-	6	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	5	5	9	8	19	12	19	12	9	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721769769	X	98546495	GT	G	780	PASS	-	-	-	-	-	Del	-	D	98546495	98546504	1	56	705.605	-	-	8	1	1	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	6	7	8	7	16	17	16	17	8	7	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721772886	X	125885502	GAGAATGAGATGGAGGATAACAATGAAGCAAGCACATGTTTGTTTCTAGGACCTAGAGAATTGTCAGAAATAACAACTACCAAGTAGCTCTAAAAGTCTGGATGTGGGCATGGTTGAAGAAAACAAACACACAAACAAGAAGATTGTTTAACAGTCTGTGTAGGAGTAGTTAGACCTCCAGATGCACTATAAAATGGCAGAGATTAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGACAGATCACGAGTGCAAGAGATCGAGACCATGCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGTTGAGTGTGGTGGCATGCACCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGCAACAGAGCAAGACTCTGTCTCAAAAAAGAAAAAATGGCAAAGATTAAAATGAGGGGATTCTGGACCTGGGGATTACTGCACAATTTAGAATGAGGATTTCACAACTAAAACTAAGATATGATCTGAGAATCTACATGCTGAGTGATAAAATACTCTCAGCTCTTTCTGTCTTTCAATTTCTAGAGCACTGGCAATCAAGATTAAAAATCCCAGGAAAGTGATTGGTGGATACATTTCTACCTGGGAAGATTGGCTAACCTAGAAAAGATAATGCACATGCAGAGATGGTAATCAGCAATTCAACCTCACCCCTGAATATGAAGAAACAACCAAGAATAAGTTTGTGAAAAACTTCTAAAACGAAAAATAGACCAAAATAGACAAAAAGGGAAATTTAGAGGAAACAGAGACAGTACAAGGAGCAAGAGAGAATGTCATCATCATCATCATCATCATCTTCATCATGGTCATCATGATCACATCATAATAAAATAGATCAATAGAATGTTTCGAAGAATAAGTTGATAAAACTACACAGAAAATAGATAAAATATCTAACCTGGAAACAATAGAAGAGTTAACAAAGCAAATCAGTTCAGAAGGTCCTACTCCATCAGAATATATTTTCTGGAAAAGCATGACAATAAATCACAGAGGAGGAAATTATCAATAAAATCATAAAATCGAATGTCTCATAAATGAAGGACTTGAGCTTCCCAAATGAAGAAAACCTACACAATGTCACATTATTGTGAAATTTCAGAGAACTGGGGCAAAAAGAAGATTCTAAAAGCTTCCCTAGAGAAAATAAAACAAACAAACCAAGTGTCATACAAAGGATCAAAAACAACAATGACATTTGATTTATCAACAGGAACACTGGAAGGTAGACGGTATTTGAAAACTACCTTCAAAATTCAAAGAAATAATTGAATAATTGTTTGCAACCTAAAAATTTATATCTAGCTAAAGAATAAAAAAATGAAAGTAAATGCCTTTTCAGACATGAAAAATCTAAAAAAAAAATGCAGGTTCTCTCAAGGAGCTACTTGAATATGTATTCCATGGAATCGAGAGAGAATGCAGATCCAGGAAATAGAGGAATGAGGCAAACACAAGCCTAAAAATGATGCTTAAGAAAATTTCTTATGTCTCAAACTAAAAAGTCAGGACATAATATGTAAAACTAAAAACTAAGAAATAAAAATATAAGTATGTTATTTCAAAGTAACAAAATAAATATCAAAAGAAATAACTAAAAGAGTTGAAAGCAATTAGCCTGGGGAATTGTACTGAGCATTGAGATAGGGTACAGAAGTAGACTACTGCTTTTCTTTCTTTGACTTTTAAAGCAGTGGTCATGTGTTATTCATAAAAATAAAAACTACATAAAAAGAAATATGATGACTTCAAAGGGATTTACTTTTGAATCTCAACACCAACTTATCCCAGTTTTAAGGTAACTATACCATTGGTATGAAGAAGCTAGTCACCTTTTACTAAGATAATATAAACTGTTGCAGAATAATCTAGCAAGGTTTTAAAATATTTTGCTCACTAA	G	327	PASS	-	-	-	-	-	Del	-	D	125885502	125887529	2024	42	598.069	-	-	1	1	-	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	6	5	0	0	9	6	15	11	6	5	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721773523	X	132172466	AT	A	900	PASS	USP26	CCDS14635.1	r.?	-	-	Del	intronic	D	132172466	132172469	1	66	815.549	-	-	2	1	1	USP26|CCDS14635.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	USP26|CCDS14635.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	10	5	11	8	26	30	26	30	11	8	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721776557	X	147375283	TTA	T	900	PASS	-	-	-	-	-	Del	-	D	147375283	147375289	2	66	811.936	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	5	10	7	10	30	29	30	29	7	10	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721777694	X	153193679	CCGGTGCCGGGG	C	290	PASS	ARHGAP4	CCDS14736.1	r.?	-	-	Del	upstream	D	153193679	153193693	11	35	543.699	-	-	1	1	1	ARHGAP4|CCDS14736.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ARHGAP4|ENST00000442262|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	6	4	0	0	27	19	27	22	6	4	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721777695	X	153193680	CGGTGCCGGGGCGCGGCCG	CGCACCCT	725	PASS	ARHGAP4	CCDS14736.1	r.?	-	-	Complex	upstream	DI	153193681	153193698	18	176	0	-	-	0	1	1	ARHGAP4|CCDS14736.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	ARHGAP4|ENST00000442262|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	10	15	0	0	26	19	26	22	10	15	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721778169	Y	6642090	GA	G	660	PASS	-	-	-	-	-	Del	-	D	6642090	6642092	1	42	601.648	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	5	7	6	11	11	11	11	7	6	1	1	1	1	1	1	1	1
2662728	PD18008a	PD18008b	2721778215	Y	7615601	GA	G	420	PASS	-	-	-	-	-	Del	-	D	7615601	7615610	1	14	384.016	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	6	1	6	3	15	10	15	10	6	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710661259	1	1376676	C	CGGT	445	PASS	VWA1	CCDS27.1	r.2925_2926insggu	c.?	p.?	Ins	3'UTR variant	I	1376676	1376677	3	36	505.106	-	-	0	1	1	VWA1|CCDS27.1|r.2925_2926insggu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	VWA1|CCDS27.1|r.2925_2926insggu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	28	14	28	14	0	0	./.	5	5	6	9	20	21	21	22	6	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710665706	1	16509820	GTTCA	G	387	PASS	-	-	-	-	-	Del	-	D	16509820	16509829	4	25	424.073	-	-	2	1	-	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	4	4	6	8	16	23	16	23	6	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710669437	1	27109263	TA	T	780	PASS	ARID1A	CCDS285.1	r.?	-	-	Del	downstream	D	27109263	27109269	1	56	695.892	-	-	5	1	1	ARID1A|CCDS285.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PIGV|ENST00000430292|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	10	12	10	0	0	./.	6	7	15	7	26	19	26	19	15	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710673564	1	41141506	AG	A	869	PASS	-	-	-	-	-	Del	-	D	41141506	41141509	1	66	802.211	-	-	2	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	10	5	13	8	29	18	29	18	13	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710678172	1	58194265	C	CA	660	PASS	DAB1	CCDS607.1	r.?	-	-	Ins	intronic	I	58194265	58194275	1	42	569.705	-	-	9	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	18	14	0	0	./.	6	5	14	10	27	30	28	31	14	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710685367	1	81745038	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	81745038	81745048	1	12	265.798	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	2	35	36	36	38	3	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710694975	1	113653382	CT	C	720	PASS	LRIG2	CCDS30808.1	r.?	-	-	Del	intronic	D	113653382	113653386	1	49	644.539	-	-	3	1	1	LRIG2|CCDS30808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRIG2|CCDS30808.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	6	6	8	7	21	24	21	24	8	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710702854	1	153819469	A	AT	1560	PASS	GATAD2B	CCDS1054.1	r.?	-	-	Ins	intronic	I	153819469	153819472	1	132	1380.95	-	-	2	1	1	GATAD2B|CCDS1054.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GATAD2B|CCDS1054.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	21	5	30	11	54	23	55	24	30	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710703979	1	156428706	T	TG	300	PASS	MEF2D	CCDS1143.1	r.?	-	-	Ins	downstream	I	156428706	156428707	1	6	264.594	-	-	0	1	1	MEF2D|CCDS1143.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MEF2D|CCDS1143.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	14	19	15	0	0	./.	0	5	0	5	28	36	29	36	0	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710704982	1	159430905	G	GT	2040	PASS	-	-	-	-	-	Ins	-	I	159430905	159430913	1	323	1805.62	-	-	7	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	18	16	25	26	50	52	50	52	25	26	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710705379	1	160602011	GAC	G	300	PASS	SLAMF1	CCDS1207.1	r.?	-	-	Del	intronic	D	160602011	160602026	2	10	268.809	-	-	7	1	1	SLAMF1|CCDS1207.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLAMF1|CCDS1207.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	4	1	4	1	33	38	33	38	4	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710708515	1	168976192	T	TG	1440	PASS	-	-	-	-	-	Ins	-	I	168976192	168976198	1	160	1274.03	-	-	5	1	1	-	-	./.	0	0	0	0	11	18	12	18	0	0	./.	9	15	10	17	40	50	40	51	10	18	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710711195	1	176584613	A	AT	989	PASS	PAPPA2	CCDS41438.1	r.?	-	-	Ins	intronic	I	176584613	176584623	1	88	891.071	-	-	9	1	1	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	23	18	23	0	0	./.	10	7	15	15	34	40	35	40	15	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710714015	1	184067185	CTCAGGAGGAGCTGAGAGATTGG	C	319	PASS	-	-	-	-	-	Del	-	D	184067185	184067210	22	40	591.379	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	7	4	6	3	28	28	29	29	7	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710714599	1	186094260	A	AT	360	PASS	HMCN1	CCDS30956.1	r.?	-	-	Ins	intronic	I	186094260	186094270	1	16	317.754	-	-	9	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	20	13	20	0	0	./.	3	3	5	1	60	52	61	53	5	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710715091	1	187407938	TCAG	T	2069	PASS	-	-	-	-	-	Del	-	D	187407938	187407944	3	340	1881.66	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	16	19	23	24	43	36	43	36	23	24	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710716005	1	189852023	C	CT	1380	PASS	-	-	-	-	-	Ins	-	I	189852023	189852030	1	144	1222.07	-	-	6	1	1	-	-	./.	0	0	0	0	11	16	12	16	0	0	./.	8	15	11	21	28	41	30	41	11	21	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710717476	1	193958347	GA	G	1800	PASS	-	-	-	-	-	Del	-	D	193958347	193958356	1	247	1611.05	-	-	8	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	12	18	24	22	46	47	46	47	24	22	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710722955	1	209212287	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	209212287	209212307	2	12	268.809	-	-	9	1	-	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	4	36	33	36	33	2	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710727899	1	222428235	T	TG	1465	PASS	-	-	-	-	-	Ins	-	I	222428235	222428244	1	210	1416.04	-	-	8	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	13	14	20	21	33	35	33	36	20	21	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710730741	1	230575810	TTCTTTC	T	300	PASS	-	-	-	-	-	Del	-	D	230575810	230575820	6	12	268.809	-	-	1	1	-	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	1	0	20	27	20	27	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710730862	1	230969971	GAT	G	269	PASS	C1orf198	CCDS1587.1	r.?	-	-	Del	downstream	D	230969971	230969988	2	6	268.809	-	-	8	1	1	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C1orf198|CCDS1587.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	15	8	15	0	0	./.	0	5	0	7	30	45	30	45	0	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710734619	1	240327529	TTTTTTGTTTTTTGGTACTTTCACCTATTTCCTGACAAATTAAGCAACCTTAAGACCTGTTTCCAGACAAATTAAGCAACCTTGAGATTCCCTAACTTAATAAA	T	348	PASS	FMN2	CCDS31069.2	r.?	-	-	Del	intronic	D	240327529	240327636	103	48	643.936	-	-	1	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	7	0	0	26	19	31	26	5	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710758750	10	73771096	C	CT	600	PASS	CHST3	CCDS7312.1	r.4744_4745insu	c.?	p.?	Ins	3'UTR variant	I	73771096	73771098	1	35	533.714	-	-	1	1	1	CHST3|CCDS7312.1|r.4744_4745insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CHST3|CCDS7312.1|r.4744_4745insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	16	15	16	15	0	0	./.	4	6	7	7	20	17	20	17	7	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710759323	10	75093382	A	AC	269	PASS	TTC18	CCDS7324.2	r.?	-	-	Ins	intronic	I	75093382	75093386	1	6	239.764	-	-	3	1	1	TTC18|CCDS7324.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC18|CCDS7324.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	26	14	26	0	0	./.	0	5	0	4	30	28	30	29	0	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710759767	10	76299454	G	GA	300	PASS	ADK	CCDS7344.1	r.?	-	-	Ins	intronic	I	76299454	76299464	1	10	262.041	-	-	9	1	1	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADK|CCDS7344.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	4	1	37	28	38	28	4	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710764145	10	92856028	GTAATTTATAAAGG	GTTTAGTTTAAT	348	PASS	-	-	-	-	-	Complex	-	DI	92856029	92856041	13	48	0	-	-	0	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	5	7	0	0	18	28	19	28	5	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710777165	10	135491035	AG	A	377	PASS	-	-	-	-	-	Del	-	D	135491035	135491039	1	56	693.829	-	-	3	1	1	-	-	./.	0	0	0	0	110	101	110	101	0	0	./.	7	6	8	6	154	135	154	135	8	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710778152	11	3175044	ACGGGTGGG	A	377	PASS	OSBPL5	CCDS31344.1	r.?	-	-	Del	intronic	D	3175044	3175053	8	26	687.282	-	-	1	1	1	OSBPL5|CCDS31344.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OSBPL5|CCDS31344.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	1	12	4	13	9	26	9	26	4	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710786955	11	30346098	T	TG	720	PASS	C11orf46	CCDS7869.1	r.?	-	-	Ins	intronic	I	30346098	30346107	1	33	640.434	-	-	8	1	1	C11orf46|CCDS7869.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C11orf46|CCDS7869.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	10	2	12	3	26	14	26	14	12	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710787159	11	31209546	A	AT	540	PASS	ENSG00000226746	ENST00000399333	r.?	-	-	Ins	intronic	I	31209546	31209555	1	30	469.79	-	-	8	1	1	ENSG00000226746|ENST00000399333|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000226746|ENST00000399333|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	10	8	0	0	./.	4	5	5	7	23	29	23	29	5	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710792889	11	49364222	G	GT	397	PASS	-	-	-	-	-	Ins	-	I	49364222	49364232	1	21	427.157	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	6	3	11	19	29	20	30	3	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710793133	11	49958431	TC	T	1080	PASS	-	-	-	-	-	Del	-	D	49958431	49958435	1	100	968.478	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	9	9	12	10	22	26	22	26	12	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710793389	11	50682450	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	50682450	50682456	1	24	426.555	-	-	5	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	5	7	10	18	10	18	5	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710793839	11	55358177	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	55358177	55358186	1	36	695.108	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	11	8	13	25	36	25	36	8	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710801238	11	79737304	GC	G	1380	PASS	-	-	-	-	-	Del	-	D	79737304	79737307	1	156	1243.05	-	-	2	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	11	12	13	16	31	30	31	30	13	16	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710804864	11	91598422	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	91598422	91598423	1	12	311.788	-	-	0	1	-	-	-	./.	0	0	0	0	14	11	14	12	0	0	./.	1	5	2	11	25	23	26	23	2	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710807431	11	99771050	A	AT	749	PASS	CNTN5	ENST00000279463	r.?	-	-	Ins	intronic	I	99771050	99771057	1	50	692.098	-	-	6	1	1	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	9	9	12	22	26	23	26	9	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710812154	11	115159028	CCAGAAGTCCAGGAGAAAAAATTACATTTTA	C	406	PASS	CADM1	CCDS8373.1	r.?	-	-	Del	intronic	D	115159028	115159062	30	64	757.007	-	-	1	1	1	CADM1|CCDS8373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM1|CCDS8373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	7	7	6	6	30	26	31	27	7	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710812968	11	117947547	A	AG	300	PASS	TMPRSS4	CCDS31684.1	r.?	-	-	Ins	upstream	I	117947547	117947555	1	12	265.543	-	-	7	1	1	TMPRSS4|CCDS31684.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TMPRSS4|CCDS31684.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	14	16	14	0	0	./.	3	2	4	5	13	16	13	17	4	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710813544	11	119526755	TCAC	T	569	PASS	PVRL1	CCDS8426.1	r.?	-	-	Del	downstream	D	119526755	119526762	3	35	539.515	-	-	2	1	1	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PVRL1|CCDS8425.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	4	6	7	18	14	18	14	6	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710816053	11	127342016	CCTGT	C	327	PASS	-	-	-	-	-	Del	-	D	127342016	127342026	4	20	374.289	-	-	2	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	3	5	5	16	23	16	23	5	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710817759	11	134061472	C	CT	1200	PASS	NCAPD3	CCDS31723.1	r.?	-	-	Ins	intronic	I	134061472	134061479	1	117	1063.38	-	-	6	1	1	NCAPD3|CCDS31723.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCAPD3|CCDS31723.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	12	8	13	14	28	34	28	34	13	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710822787	12	12863648	A	AT	716	PASS	-	-	-	-	-	Ins	-	I	12863648	12863656	1	55	748.885	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	4	10	7	10	20	24	20	24	7	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710823080	12	13761442	CA	C	840	PASS	GRIN2B	CCDS8662.1	r.?	-	-	Del	intronic	D	13761442	13761448	1	63	756.11	-	-	5	1	1	GRIN2B|CCDS8662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN2B|CCDS8662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	8	6	11	8	23	26	23	26	11	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710827667	12	27886343	C	CT	838	PASS	MRPS35	CCDS8714.1	r.?	-	-	Ins	intronic	I	27886343	27886351	1	72	798.765	-	-	7	1	1	MRPS35|CCDS8714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MRPS35|CCDS8714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	7	8	11	11	25	28	26	28	11	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710830049	12	34162126	TTTTA	T	656	PASS	-	-	-	-	-	Del	-	D	34162126	34162135	4	54	702.618	-	-	2	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	5	8	9	12	19	29	19	29	9	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710831206	12	40818564	CA	C	300	PASS	MUC19	ENST00000425730	r.?	-	-	Del	intronic	D	40818564	40818574	1	12	267.459	-	-	9	1	1	MUC19|ENST00000425730|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MUC19|ENST00000425730|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	19	5	19	0	0	./.	3	2	3	2	29	20	29	20	3	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710832824	12	47119409	CA	C	360	PASS	-	-	-	-	-	Del	-	D	47119409	47119413	1	15	324.563	-	-	3	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	4	2	5	4	15	27	15	27	5	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710833042	12	47752652	TAC	T	625	PASS	-	-	-	-	-	Del	-	D	47752652	47752656	2	56	702.618	-	-	1	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	6	7	13	9	23	18	23	18	13	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710833577	12	49637948	AG	A	300	PASS	-	-	-	-	-	Del	-	D	49637948	49637950	1	6	259.632	-	-	1	1	-	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	0	8	0	37	19	37	19	8	0	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710837202	12	61833310	TC	T	780	PASS	-	-	-	-	-	Del	-	D	61833310	61833312	1	54	703.22	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	8	5	10	11	27	26	27	26	10	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710842451	12	80587299	GTAA	G	300	PASS	-	-	-	-	-	Del	-	D	80587299	80587324	3	12	270.469	-	-	8	1	-	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	2	3	3	3	19	21	19	21	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710854896	12	122698636	AC	A	540	PASS	DIABLO	CCDS9228.1	r.?	-	-	Del	intronic	D	122698636	122698638	1	28	486.243	-	-	1	1	-	DIABLO|CCDS9228.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIABLO|CCDS9228.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	6	8	9	19	23	19	23	8	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710855527	12	124180507	CA	C	569	PASS	TCTN2	CCDS9253.1	r.?	-	-	Del	intronic	D	124180507	124180509	1	36	536.122	-	-	1	1	1	TCTN2|CCDS9253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCTN2|CCDS9253.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	5	5	8	5	21	12	21	12	8	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710856462	12	127064165	TA	T	720	PASS	-	-	-	-	-	Del	-	D	127064165	127064172	1	40	649.126	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	9	7	10	17	23	17	23	7	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710856986	12	128279891	C	CTATTA	360	PASS	-	-	-	-	-	Ins	-	I	128279891	128279912	5	16	306.501	-	-	4	1	-	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	3	3	4	3	14	24	14	25	4	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710864778	13	34740489	T	TTA	300	PASS	-	-	-	-	-	Ins	-	I	34740489	34740505	2	12	265.016	-	-	7	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	2	3	2	7	17	23	17	23	2	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710865045	13	35758324	AGATAT	A	687	PASS	NBEA	CCDS45026.1	r.?	-	-	Del	intronic	D	35758324	35758336	5	56	704.695	-	-	2	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	7	6	8	10	23	23	23	23	8	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710870175	13	51101360	T	TC	269	PASS	-	-	-	-	-	Ins	-	I	51101360	51101370	1	10	262.608	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	5	2	17	13	17	13	5	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710870352	13	51740479	C	CA	358	PASS	-	-	-	-	-	Ins	-	I	51740479	51740487	1	72	801.671	-	-	7	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	8	7	12	8	29	27	29	28	12	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710871862	13	56934750	T	TA	1140	PASS	-	-	-	-	-	Ins	-	I	56934750	56934758	1	54	1018.5	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	17	4	22	19	33	19	33	4	22	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710873489	13	61888996	A	AT	926	PASS	-	-	-	-	-	Ins	-	I	61888996	61889005	1	77	857.082	-	-	8	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	6	10	8	12	16	31	16	32	8	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710874237	13	63800272	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	63800272	63800282	1	40	642.059	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	9	3	11	5	37	28	37	28	11	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710874730	13	65680195	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	65680195	65680205	1	48	637.243	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	17	0	0	./.	7	5	9	7	27	26	27	26	9	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710875515	13	68424720	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	68424720	68424728	1	42	588.454	-	-	7	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	6	5	9	9	18	25	18	27	9	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710881727	13	89095438	AG	A	420	PASS	-	-	-	-	-	Del	-	D	89095438	89095440	1	18	379.451	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	2	6	6	21	14	21	14	6	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710881964	13	89940590	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	89940590	89940597	1	90	911.289	-	-	6	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	8	9	9	10	19	30	19	31	9	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710891267	14	22564472	AT	A	900	PASS	TRAC	ENST00000446346	r.?	-	-	Del	intronic	D	22564472	22564475	1	70	813.374	-	-	2	1	1	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	9	6	10	10	31	25	31	25	10	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710892387	14	25906233	CA	C	600	PASS	-	-	-	-	-	Del	-	D	25906233	25906243	1	36	542.651	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	5	5	8	5	27	22	27	22	8	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710894953	14	34151605	TA	T	1080	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	34151605	34151609	1	84	976.771	-	-	3	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	13	5	16	8	28	29	28	29	16	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710897015	14	39778266	C	CT	780	PASS	CTAGE5	CCDS9674.1	r.?	-	-	Ins	intronic	I	39778266	39778268	1	44	697.619	-	-	1	1	1	CTAGE5|CCDS9674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTAGE5|CCDS9674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	10	3	12	9	23	23	24	23	12	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710906247	14	69145998	ACAAACAAAAAACCCC	A	290	PASS	RAD51L1	ENST00000488612	r.?	-	-	Del	intronic	D	69145998	69146014	15	35	542.049	-	-	1	1	-	RAD51L1|ENST00000488612|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	RAD51L1|ENST00000488612|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	4	6	3	5	23	31	23	31	4	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710909410	14	78578144	CT	C	449	PASS	-	-	-	-	-	Del	-	D	78578144	78578154	1	24	432.917	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	5	4	9	17	26	17	26	4	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710909941	14	80852710	CA	C	1020	PASS	AC010849.1	ENST00000504475	r.?	-	-	Del	intronic	D	80852710	80852712	1	88	916.486	-	-	1	1	1	AC010849.1|ENST00000504475|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC010849.1|ENST00000504475|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	10	7	15	9	33	23	33	23	15	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710910024	14	81256071	AATG	A	1167	PASS	C14orf145	CCDS32130.1	r.?	-	-	Del	intronic	D	81256071	81256077	3	126	1138.36	-	-	1	1	1	C14orf145|CCDS32130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C14orf145|CCDS32130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	8	13	8	14	21	31	21	31	8	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710910167	14	81629193	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	81629193	81629201	1	10	268.315	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	12	9	0	0	./.	1	4	2	5	21	23	21	23	2	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710912642	14	89770437	C	CA	900	PASS	FOXN3	CCDS32138.1	r.?	-	-	Ins	intronic	I	89770437	89770439	1	72	804.945	-	-	1	1	1	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	16	0	0	./.	8	7	11	7	27	23	28	23	11	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710912924	14	90534786	G	GA	569	PASS	KCNK13	CCDS9889.1	r.?	-	-	Ins	intronic	I	90534786	90534793	1	35	522.783	-	-	6	1	1	KCNK13|CCDS9889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNK13|CCDS9889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	23	12	23	0	0	./.	6	4	9	9	24	27	26	27	9	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710918217	15	20117552	AG	A	632	PASS	-	-	-	-	-	Del	-	D	20117552	20117555	1	54	705.24	-	-	2	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	8	8	11	27	25	27	25	8	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710920701	15	26602891	AT	A	1140	PASS	-	-	-	-	-	Del	-	D	26602891	26602900	1	110	1031.61	-	-	8	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	9	10	12	13	32	35	32	35	12	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710922394	15	33165066	G	GAC	1020	PASS	FMN1	CCDS45209.1	r.?	-	-	Ins	intronic	I	33165066	33165068	2	88	898.942	-	-	0	1	1	FMN1|CCDS45209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN1|CCDS45209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	7	10	11	13	25	26	25	26	11	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710926675	15	46586963	ATATCT	A	987	PASS	-	-	-	-	-	Del	-	D	46586963	46586977	5	96	977.319	-	-	2	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	11	7	13	9	20	25	20	25	13	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710930107	15	57516096	A	AT	1016	PASS	TCF12	CCDS10159.1	r.?	-	-	Ins	intronic	I	57516096	57516103	1	104	1020.18	-	-	6	1	1	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	8	0	0	./.	12	7	17	11	27	19	28	19	17	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710933343	15	67211827	AG	A	660	PASS	-	-	-	-	-	Del	-	D	67211827	67211829	1	42	579.791	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	5	10	8	26	20	26	20	10	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710940027	15	90163945	T	TTTTG	389	PASS	C15orf42	CCDS10352.2	r.?	-	-	Ins	intronic	I	90163945	90163969	4	14	363.211	-	-	5	1	-	C15orf42|CCDS10352.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C15orf42|CCDS10352.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	1	6	3	7	26	26	26	26	3	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710940525	15	91390699	GA	G	660	PASS	-	-	-	-	-	Del	-	D	91390699	91390708	1	42	596.649	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	6	8	10	23	30	23	30	8	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710943002	15	99231584	A	ACC	269	PASS	IGF1R	CCDS10378.1	r.?	-	-	Ins	intronic	I	99231584	99231586	2	6	251.61	-	-	1	1	1	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	0	5	1	5	26	20	27	20	1	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710948078	16	11509362	A	AGAG	476	PASS	-	-	-	-	-	Ins	-	I	11509362	11509368	3	36	490.265	-	-	1	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	5	5	6	7	17	23	17	24	6	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710948159	16	11698990	CCT	C	329	PASS	-	-	-	-	-	Del	-	D	11698990	11699010	2	15	324.021	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	2	4	18	14	18	14	2	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710960686	16	57913628	GT	G	538	PASS	CNGB1	CCDS42169.1	r.?	-	-	Del	downstream	D	57913628	57913638	1	35	541.44	-	-	9	1	1	CNGB1|CCDS42169.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CNGB1|CCDS42169.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	11	10	11	0	0	./.	4	6	5	8	15	23	15	23	5	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710961164	16	59018146	G	GA	300	PASS	AC106793.1	ENST00000500117	r.?	-	-	Ins	intronic	I	59018146	59018156	1	12	268.011	-	-	9	1	1	AC106793.1|ENST00000500117|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC106793.1|ENST00000500117|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	13	15	0	0	./.	2	3	4	4	31	25	31	25	4	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710968134	16	81410489	TC	T	360	PASS	GAN	CCDS10935.1	r.?	-	-	Del	intronic	D	81410489	81410492	1	15	323.419	-	-	2	1	1	GAN|CCDS10935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAN|CCDS10935.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	3	13	3	0	0	./.	4	2	6	3	17	16	17	16	6	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710972127	17	3198253	G	GT	540	PASS	OR3A1	CCDS11023.1	r.?	-	-	Ins	upstream	I	3198253	3198262	1	30	482.218	-	-	8	1	1	OR3A1|CCDS11023.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	OR3A1|CCDS11023.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	12	14	12	0	0	./.	5	4	5	6	27	22	28	22	5	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710976271	17	14160141	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	14160141	14160151	1	12	315.258	-	-	9	1	1	-	-	./.	0	0	0	0	23	20	23	21	0	0	./.	1	5	3	8	30	27	30	27	3	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2710985995	17	46840191	GA	G	1200	PASS	TTLL6	CCDS45724.1	r.2855delU	c.?	p.?	Del	3'UTR variant	D	46840191	46840194	1	112	1082.57	-	-	2	1	1	TTLL6|CCDS45724.1|r.2855delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TTLL6|CCDS45724.1|r.2855delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	25	17	25	0	0	./.	13	7	16	9	24	19	24	19	16	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711003583	18	20572190	G	GTTTC	420	PASS	RBBP8	CCDS11875.1	r.?	-	-	Ins	intronic	I	20572190	20572197	4	20	363.109	-	-	1	1	1	RBBP8|CCDS11875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBBP8|CCDS11875.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	14	10	0	0	./.	4	3	6	4	28	17	28	17	6	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711007109	18	32766442	ACAT	A	838	PASS	-	-	-	-	-	Del	-	D	32766442	32766449	3	70	811.807	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	9	8	13	22	31	22	31	8	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711008827	18	38787760	G	GC	840	PASS	-	-	-	-	-	Ins	-	I	38787760	38787761	1	39	750.301	-	-	0	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	12	2	15	6	29	23	29	23	15	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711012504	18	51098925	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	51098925	51098933	1	10	268.395	-	-	7	1	1	-	-	./.	0	0	0	0	17	28	17	28	0	0	./.	4	1	5	1	36	31	37	31	5	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711014494	18	57413560	CTTTGTATAT	C	348	PASS	-	-	-	-	-	Del	-	D	57413560	57413574	9	49	648.362	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	6	6	8	23	24	23	24	6	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711018621	18	69551103	CACTATGTCAAAAGGCACAAAA	C	609	PASS	-	-	-	-	-	Del	-	D	69551103	69551125	21	130	1139.3	-	-	1	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	9	12	7	9	23	21	25	24	9	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711038019	19	49991972	G	GT	1020	PASS	SNORD32A	CCDS12768.1	r.?	-	-	Ins	intronic	I	49991972	49991979	1	88	913.346	-	-	6	1	1	SNORD32A|CCDS12768.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNORD32A|CCDS12768.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	7	10	11	13	32	24	32	24	11	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711042414	2	2378279	TAGTTCTTTTAATTGTGATGGTAAGGTTTCGATTTTAGATCTTTCCTGCTTTCTCTTGTGGACATTTAGTACTATAAATTTCTCTCTAAACACTGCTTTAGCTGTGTCCCAGAGATTCTGGTATGTTGTGTCTTTGTTCTCATTGGTTTCAAAGAACTTATTTATTTCTGCCTTAATTTCATTATTTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGTGCAGTTTTGAGTGAGTTTCTTAATCCTGAGTTCTAATTTGATTGTACTGTGGTCTGAGAGACTGTTATGATTTCCATTCTTTTACATTTGCTGAGGAGTGTTTTACCTCCAATTATGTGGTCAATTTTAGAATAAGTGTGATGTGGTCCTGAGAAAAATGTATATTCTGTTGACATGGGGTAAAGAGTTCTGTAGATGTCTATTAGGTCTCCTTGGTCCAGAGCTG	T	551	PASS	-	-	-	-	-	Del	-	D	2378279	2378744	459	104	1021.28	-	-	1	1	1	-	-	./.	0	0	0	0	15	25	15	25	0	0	./.	7	12	0	0	21	25	28	37	7	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711046259	2	14002893	GAAAGC	G	869	PASS	-	-	-	-	-	Del	-	D	14002893	14002901	5	70	800.855	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	9	8	9	30	27	30	27	8	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711047131	2	16416788	CCTT	C	586	PASS	-	-	-	-	-	Del	-	D	16416788	16416797	3	60	747.705	-	-	2	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	9	5	13	5	28	21	28	22	13	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711055882	2	41338121	TG	T	360	PASS	-	-	-	-	-	Del	-	D	41338121	41338130	1	15	322.509	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	2	6	3	32	32	32	32	6	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711061278	2	57508256	CA	C	360	PASS	-	-	-	-	-	Del	-	D	57508256	57508265	1	15	322.509	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	3	5	26	20	26	20	3	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711066182	2	72044574	ACT	A	780	PASS	-	-	-	-	-	Del	-	D	72044574	72044578	2	54	698.77	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	8	5	9	7	32	17	32	17	9	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711067368	2	76442164	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	76442164	76442183	2	15	320.703	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	2	5	4	28	34	28	34	5	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711069014	2	81487367	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	81487367	81487376	1	36	531.495	-	-	8	1	1	-	-	./.	0	0	0	0	5	21	7	21	0	0	./.	5	5	7	11	29	41	29	41	7	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711069619	2	83151354	GA	G	1260	PASS	-	-	-	-	-	Del	-	D	83151354	83151364	1	126	1126.37	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	13	8	21	12	36	28	36	28	21	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711076002	2	104342218	TA	T	660	PASS	-	-	-	-	-	Del	-	D	104342218	104342220	1	42	591.267	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	6	7	9	42	50	42	50	7	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711082198	2	123627862	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	123627862	123627880	2	16	322.509	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	3	3	3	43	28	43	28	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711082761	2	125239005	AGTTT	A	1287	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	125239005	125239010	4	156	1236.29	-	-	1	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	11	12	13	12	30	39	31	39	14	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711083815	2	128368505	A	AC	360	PASS	MYO7B	CCDS46405.1	r.?	-	-	Ins	intronic	I	128368505	128368514	1	16	300.835	-	-	8	1	1	MYO7B|CCDS46405.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO7B|CCDS46405.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	14	0	0	./.	3	3	6	4	31	40	31	40	6	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711084098	2	129112485	AT	A	1560	PASS	-	-	-	-	-	Del	-	D	129112485	129112491	1	195	1395.13	-	-	5	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	14	12	16	16	27	37	27	37	16	16	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711086138	2	133617672	TA	T	1140	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Del	intronic	D	133617672	133617676	1	108	1021.28	-	-	3	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	8	11	18	16	44	36	44	36	18	16	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711092947	2	153569198	G	GA	300	PASS	PRPF40A	CCDS46430.1	r.?	-	-	Ins	intronic	I	153569198	153569208	1	12	265.145	-	-	9	1	1	PRPF40A|CCDS46430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRPF40A|CCDS46430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	5	2	35	36	36	36	5	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711095476	2	161124209	TAAAAC	T	1138	PASS	RBMS1	CCDS2213.1	r.?	-	-	Del	downstream	D	161124209	161124224	5	117	1075.03	-	-	2	1	-	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	23	15	23	15	0	0	./.	12	8	18	11	45	37	45	37	18	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711096246	2	163630262	C	CA	1620	PASS	KCNH7	CCDS2219.1	r.?	-	-	Ins	intronic	I	163630262	163630269	1	204	1433.23	-	-	6	1	1	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	11	16	18	18	40	41	41	42	18	18	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711100361	2	175071116	C	CA	900	PASS	OLA1	CCDS2255.1	r.?	-	-	Ins	intronic	I	175071116	175071126	1	66	792.426	-	-	9	1	1	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OLA1|CCDS2255.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	17	0	0	./.	10	5	14	10	39	39	39	39	14	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711107144	2	195685141	G	GA	1140	PASS	-	-	-	-	-	Ins	-	I	195685141	195685149	1	108	1004.42	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	11	15	17	42	38	42	39	15	17	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711107405	2	196451207	A	ATATTTAG	493	PASS	SLC39A10	ENST00000458054	r.?	-	-	Ins	intronic	I	196451207	196451216	7	88	840.325	-	-	1	1	1	SLC39A10|ENST00000458054|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SLC39A10|ENST00000458054|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	7	10	7	9	27	32	27	34	7	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711111661	2	208196173	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	208196173	208196182	1	56	668.065	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	7	12	10	30	43	30	44	12	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711117108	2	223070335	TAATA	T	449	PASS	PAX3	CCDS42826.1	r.?	-	-	Del	intronic	D	223070335	223070345	4	24	423.39	-	-	2	1	1	PAX3|CCDS42826.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAX3|CCDS42826.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	3	5	4	40	33	40	33	5	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711125785	20	4339851	TTTCCCCAGCTGC	T	348	PASS	-	-	-	-	-	Del	-	D	4339851	4339864	12	40	652.828	-	-	1	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	9	3	9	4	22	14	22	14	9	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711128950	20	14994579	AT	A	660	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14994579	14994583	1	40	596.017	-	-	3	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	7	4	8	5	28	24	28	24	8	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711136889	20	41392103	TA	T	480	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41392103	41392113	1	21	433.412	-	-	9	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	9	3	9	0	0	./.	6	2	8	4	22	19	22	19	8	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711138742	20	47533185	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	47533185	47533200	2	12	272.012	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	27	23	27	23	2	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711142632	20	59439999	GA	G	660	PASS	-	-	-	-	-	Del	-	D	59439999	59440008	1	42	597.823	-	-	8	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	6	5	7	8	25	21	25	21	7	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711145535	21	10616698	CA	C	610	PASS	-	-	-	-	-	Del	-	D	10616698	10616702	1	56	677.795	-	-	3	1	1	-	-	./.	0	0	0	0	37	45	37	45	0	0	./.	6	7	12	10	78	66	78	66	12	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711147297	21	14361006	AAAGT	A	809	PASS	-	-	-	-	-	Del	-	D	14361006	14361011	4	60	760.499	-	-	1	1	1	-	-	./.	0	0	0	0	45	54	45	59	0	0	./.	5	9	6	13	84	117	84	125	6	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711149198	21	20140975	G	GAATTACTTAAACAACAATTTGTTTAAGTAACTTAAACAATTTGTA	319	PASS	-	-	-	-	-	Ins	-	I	20140975	20140977	45	42	297.451	-	-	0	1	1	-	-	./.	0	0	0	0	4	5	5	5	0	0	./.	5	6	0	0	17	13	25	20	5	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711149418	21	20677182	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	20677182	20677192	1	40	645.664	-	-	9	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	9	3	13	7	31	27	31	27	13	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711150048	21	22139793	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	22139793	22139803	1	21	429.238	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	2	9	3	30	21	32	23	9	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711150496	21	23169487	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	23169487	23169497	1	48	629.408	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	5	7	8	10	19	22	19	22	8	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711155204	21	36000637	AT	A	540	PASS	-	-	-	-	-	Del	-	D	36000637	36000641	1	30	489.064	-	-	3	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	5	7	9	14	25	14	25	7	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711157187	21	41753754	T	TA	300	PASS	DSCAM	CCDS42929.1	r.?	-	-	Ins	intronic	I	41753754	41753762	1	12	269.027	-	-	7	1	1	DSCAM|CCDS42929.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DSCAM|CCDS42929.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	2	3	3	28	27	28	27	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711158558	21	45746461	CCACGGATACCGAGATGTTCAGACAGAGGGGCATGCACAGGCTGCAGGGTCGGGGGGGGTGGGGGGGCTGGGGACGTGGCTGAAGAGCTGCCCTGACCCCTGACTCCCCATCATCCTCCCATCCCCGTCCTGCACAGGCACCGCATGCCACGGGAGCAGTGGTGGCTGAGCCTGCGGCTCATGCTGAAGATGCTGG	C	261	PASS	PFKL	CCDS33582.1	r.2251-136_2309del195	c.2196-136_2254del195	p.?	Del	ess splice	D	45746461	45746660	195	28	488.462	-	-	1	1	1	PFKL|CCDS33582.1|r.2251-136_2309del195|c.2196-136_2254del195|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	PFKL|CCDS33582.1|r.2251-136_2309del195|c.2196-136_2254del195|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	10	9	10	9	0	0	./.	3	6	0	0	8	6	11	12	3	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711160249	22	17969179	T	TG	600	PASS	CECR2	ENST00000400579	r.?	-	-	Ins	intronic	I	17969179	17969180	1	36	539.173	-	-	0	1	-	CECR2|ENST00000400579|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CECR2|ENST00000400579|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	5	5	8	8	21	19	21	19	8	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711162322	22	24550505	CCCTTGTCCTCACACAG	C	348	PASS	CABIN1	CCDS13823.1	r.?	-	-	Del	intronic	D	24550505	24550527	16	48	654.473	-	-	1	1	1	CABIN1|CCDS13823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CABIN1|CCDS13823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	5	7	6	7	20	17	20	17	6	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711171878	3	2663911	AGAATAACTTCCAGATGAAAGTCCAGCTGAAAACATAGTCTCCTTTGGACAAGAATATAAAGACTTCAGTCTGCCAGAGTAGCATTACTAGACACCTGGCTGCAGGAAATGTGATGTTACTTTTTTGACATCTCTGCTCACTGCAACTTCTGCCACCCGGGTTCCAGTGATTCTCGTGCCTCAACTCCCCAAGCAGTTGGGATTACAAGTGTGTGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGTTGGACAGGCTGGTCTCGAACTCCTGACCTCAGCCCACCTCGGCCTCCCAGAGCTTGCTGGGATTACAGGTGTGAGCCACCACGCTCAGCTGGACAAGCAAGTTTTGAAGCAGAGGAGTTGTCTGCAAAATCTGGAATATGGGGGCAGTTATGGAGAAATAATAATTAGTACTGTTCATTGAATGTTTTAATGTTTGCCAGACCTTTTGAGTTCTTCATATACATTATCTTAGCCTACCTAAAGCAACCATGTAAGGATGTGTGTTAATATATCCATTTACAGATGAAGTAATGGAAACTCAGATAAGTAGATATTTCATGCAAGATCACGCAGCTGGTGTGGAAAAGCTGAGATCTGAGACTGGTGCACTCTGACTCAAAAGCCAGCACTCTTAGGGATTAGATTTCCTTGTGTG	A	290	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2663911	2664585	673	35	539.381	-	-	1	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	6	0	0	13	16	17	22	4	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711174730	3	11229846	A	AT	600	PASS	HRH1	CCDS2604.1	r.?	-	-	Ins	intronic	I	11229846	11229855	1	35	532.758	-	-	8	1	1	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	6	4	12	6	30	27	30	27	12	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711176410	3	16631752	T	TCAACTTTAAGTATGTTTACTTAAACATACTTAACATACTTAAA	290	PASS	DAZL	CCDS43059.1	r.?	-	-	Ins	intronic	I	16631752	16631773	43	27	279.893	-	-	0	1	1	DAZL|CCDS43059.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAZL|CCDS43059.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	8	2	0	0	12	11	20	13	8	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711178216	3	23213357	GA	G	749	PASS	-	-	-	-	-	Del	-	D	23213357	23213367	1	36	687.348	-	-	9	1	1	-	-	./.	0	0	0	0	16	4	16	4	0	0	./.	11	2	15	4	28	18	28	18	15	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711180668	3	31975828	T	TG	1020	PASS	OSBPL10	CCDS2651.1	r.?	-	-	Ins	intronic	I	31975828	31975833	1	78	892.263	-	-	4	1	1	OSBPL10|CCDS2651.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OSBPL10|CCDS2651.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	5	12	9	18	23	36	24	36	9	18	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711181075	3	33188646	A	AC	720	PASS	SUSD5	CCDS46787.1	r.?	-	-	Ins	downstream	I	33188646	33188647	1	48	637.624	-	-	0	1	1	SUSD5|CCDS46787.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SUSD5|CCDS46787.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	11	11	12	0	0	./.	5	7	8	9	21	28	21	28	8	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711181838	3	35641163	GGGCTAT	G	464	PASS	-	-	-	-	-	Del	-	D	35641163	35641172	6	65	862.408	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	12	7	12	21	20	21	20	7	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711185692	3	50029744	G	GA	660	PASS	RBM6	CCDS2809.1	r.?	-	-	Ins	intronic	I	50029744	50029753	1	40	586.094	-	-	8	1	1	RBM6|CCDS2809.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM6|CCDS2809.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	9	0	0	./.	7	4	13	6	34	17	35	17	13	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711191366	3	69854817	TC	T	360	PASS	MITF	CCDS43106.1	r.?	-	-	Del	intronic	D	69854817	69854819	1	16	323.027	-	-	1	1	1	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MITF|CCDS43106.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	3	3	19	36	19	36	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711194612	3	76967771	G	GT	540	PASS	ROBO2	ENST00000487694	r.?	-	-	Ins	intronic	I	76967771	76967779	1	30	480.024	-	-	7	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	5	8	5	21	22	22	23	8	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711196104	3	82008036	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	82008036	82008054	2	10	267.282	-	-	8	1	-	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	1	4	1	32	23	32	23	4	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711196234	3	82549176	TTTTAGAC	T	261	PASS	-	-	-	-	-	Del	-	D	82549176	82549184	7	30	485.443	-	-	1	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	4	5	5	5	17	18	17	18	5	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711199185	3	95940098	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	95940098	95940106	1	30	479.422	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	5	4	8	6	24	20	24	20	8	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711199349	3	96586165	ATAT	A	929	PASS	EPHA6	CCDS46876.1	r.?	-	-	Del	intronic	D	96586165	96586172	3	81	863.01	-	-	2	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	8	8	12	8	23	20	23	20	12	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711200041	3	99294751	A	ATCATCTC	406	PASS	-	-	-	-	-	Ins	-	I	99294751	99294760	7	64	696.131	-	-	1	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	7	7	9	7	25	24	25	24	9	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711200308	3	100427565	TCGTC	T	658	PASS	TFG	CCDS2939.1	r.?	-	-	Del	upstream	D	100427565	100427570	4	48	645.451	-	-	1	1	1	TFG|CCDS2939.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TFG|CCDS2939.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	12	11	12	0	0	./.	5	7	5	8	26	26	26	26	5	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711201582	3	104382226	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	104382226	104382232	1	40	640.032	-	-	5	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	9	3	13	5	31	26	31	27	13	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711208794	3	128361550	AAGAAT	A	449	PASS	RPN1	CCDS3051.1	r.?	-	-	Del	intronic	D	128361550	128361559	5	25	423.076	-	-	1	1	1	RPN1|CCDS3051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPN1|CCDS3051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	4	4	4	8	12	25	12	25	4	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711209947	3	132573079	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	132573079	132573086	1	15	318.812	-	-	6	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	4	2	6	4	26	18	26	18	6	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711213782	3	145739565	G	GA	1020	PASS	-	-	-	-	-	Ins	-	I	145739565	145739572	1	90	904.906	-	-	6	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	9	8	11	9	30	24	31	24	11	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711215457	3	151126267	G	GA	300	PASS	MED12L	CCDS33876.1	r.?	-	-	Ins	intronic	I	151126267	151126277	1	12	266.68	-	-	9	1	1	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	17	17	0	0	./.	2	3	2	3	23	29	23	29	2	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711215869	3	152176745	C	CGT	480	PASS	MBNL1	CCDS3165.1	r.?	-	-	Ins	intronic	I	152176745	152176764	2	9	421.27	-	-	9	1	1	MBNL1|CCDS3165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBNL1|CCDS3165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	0	8	3	14	18	28	18	28	3	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711217135	3	156562982	C	CT	300	PASS	LEKR1	CCDS33883.1	r.?	-	-	Ins	intronic	I	156562982	156562992	1	12	266.68	-	-	9	1	1	LEKR1|CCDS33883.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LEKR1|CCDS33883.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	2	3	2	3	34	31	34	31	2	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711225014	3	184126202	TG	T	540	PASS	EIF2B5	ENST00000444495	r.?	-	-	Del	intronic	D	184126202	184126205	1	24	484.841	-	-	2	1	1	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	7	2	10	6	18	28	18	28	10	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711226431	3	188409925	C	CA	840	PASS	LPP	CCDS3291.1	r.?	-	-	Ins	intronic	I	188409925	188409932	1	63	746.102	-	-	6	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	6	8	11	9	25	22	25	23	11	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711234104	4	14426272	AT	A	344	PASS	-	-	-	-	-	Del	-	D	14426272	14426277	1	15	320.99	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	2	6	3	19	32	19	32	6	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711236712	4	23135238	GTCTTGAACTCCTGACCTCAAGTGATCT	G	504	PASS	-	-	-	-	-	Del	-	D	23135238	23135266	27	99	963.572	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	10	8	8	4	20	12	22	16	10	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711237547	4	25521379	TG	T	776	PASS	-	-	-	-	-	Del	-	D	25521379	25521381	1	72	808.495	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	8	7	10	9	24	20	24	20	10	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711238614	4	28718742	T	TA	1140	PASS	-	-	-	-	-	Ins	-	I	28718742	28718747	1	108	1010.85	-	-	4	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	8	11	8	14	23	28	24	28	8	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711240193	4	34113821	C	CAT	660	PASS	-	-	-	-	-	Ins	-	I	34113821	34113832	2	40	579.651	-	-	5	1	-	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	4	7	6	12	20	34	20	34	6	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711243214	4	43102072	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	43102072	43102079	1	49	639.572	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	6	6	9	8	24	30	25	30	9	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711243551	4	44221873	AT	A	720	PASS	KCTD8	CCDS3467.1	r.?	-	-	Del	intronic	D	44221873	44221875	1	48	645.592	-	-	1	1	1	KCTD8|CCDS3467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCTD8|CCDS3467.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	7	5	7	5	32	19	32	19	7	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711247820	4	58634515	G	GT	344	PASS	-	-	-	-	-	Ins	-	I	58634515	58634522	1	40	585.672	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	4	14	6	33	23	33	24	14	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711248403	4	60249751	CA	C	660	PASS	-	-	-	-	-	Del	-	D	60249751	60249757	1	40	588.682	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	7	8	10	26	27	26	27	8	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711254369	4	79118317	TGGGTCTACTC	T	377	PASS	FRAS1	ENST00000264895	r.?	-	-	Del	intronic	D	79118317	79118328	10	44	700.696	-	-	1	1	1	FRAS1|ENST00000264895|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRAS1|ENST00000264895|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	10	3	14	6	30	22	30	22	14	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711254871	4	80812824	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	80812824	80812834	1	70	798.862	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	14	18	0	0	./.	6	9	10	9	26	41	26	42	10	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711257586	4	89665711	G	GA	600	PASS	FAM13A	CCDS34029.1	r.?	-	-	Ins	intronic	I	89665711	89665719	1	35	532.374	-	-	7	1	1	FAM13A|CCDS34029.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM13A|CCDS34029.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	12	0	0	./.	4	6	7	10	21	36	21	36	7	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711258390	4	92542203	A	AT	960	PASS	-	-	-	-	-	Ins	-	I	92542203	92542212	1	81	848.548	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	8	8	10	14	34	41	34	41	10	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711259934	4	98646813	T	TA	360	PASS	C4orf37	CCDS3645.1	r.?	-	-	Ins	intronic	I	98646813	98646823	1	12	319.786	-	-	9	1	1	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	1	10	3	27	19	27	20	10	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711260666	4	101279017	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	101279017	101279027	1	10	264.682	-	-	9	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	4	1	4	1	31	30	31	30	4	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711260736	4	101531286	AC	A	780	PASS	-	-	-	-	-	Del	-	D	101531286	101531288	1	54	700.696	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	8	5	8	7	28	25	28	25	8	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711262921	4	109573861	CAT	C	1200	PASS	OSTC	CCDS3681.1	r.?	-	-	Del	intronic	D	109573861	109573866	2	121	1077.99	-	-	2	1	1	OSTC|CCDS3681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSTC|CCDS3681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	10	10	10	12	26	34	26	34	10	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711264592	4	115350863	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	115350863	115350873	1	18	373.083	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	5	2	12	4	25	25	26	25	12	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711265449	4	118151834	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	118151834	118151843	1	48	633.551	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	14	0	0	./.	5	7	7	9	30	23	30	23	7	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711265589	4	118562350	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	118562350	118562360	1	63	746.167	-	-	9	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	6	8	8	12	21	38	22	38	8	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711268079	4	126179671	A	AT	279	PASS	-	-	-	-	-	Ins	-	I	126179671	126179678	1	36	586.274	-	-	6	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	3	8	3	7	28	24	28	26	3	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711268803	4	128320616	AAAGCTTCATCCC	A	580	PASS	-	-	-	-	-	Del	-	D	128320616	128320629	12	121	1076.79	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	10	10	10	11	28	32	28	32	10	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711271859	4	138061651	AT	A	960	PASS	-	-	-	-	-	Del	-	D	138061651	138061658	1	77	862.395	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	10	6	10	9	29	25	29	25	10	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711275390	4	150817835	AGT	A	670	PASS	-	-	-	-	-	Del	-	D	150817835	150817840	2	56	696.482	-	-	2	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	6	7	8	11	21	27	21	27	8	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711275397	4	150872191	TTA	T	1020	PASS	-	-	-	-	-	Del	-	D	150872191	150872197	2	78	912.682	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	12	6	15	22	29	22	29	6	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711275649	4	151673635	T	TA	360	PASS	LRBA	CCDS3773.1	r.?	-	-	Ins	intronic	I	151673635	151673645	1	15	319.786	-	-	9	1	1	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRBA|CCDS3773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	4	2	7	5	28	15	28	15	7	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711275890	4	152310132	AG	A	300	PASS	-	-	-	-	-	Del	-	D	152310132	152310136	1	6	269.498	-	-	3	1	-	-	-	./.	0	0	0	0	4	14	4	14	0	0	./.	0	5	2	6	5	18	5	18	2	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711280680	4	166832404	CT	C	929	PASS	TLL1	CCDS3811.1	r.?	-	-	Del	intronic	D	166832404	166832413	1	77	849.752	-	-	8	1	1	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	10	6	14	6	22	16	22	16	14	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711280830	4	167295101	G	GT	1073	PASS	-	-	-	-	-	Ins	-	I	167295101	167295103	1	96	958.755	-	-	1	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	7	11	10	15	29	26	29	26	10	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711284981	4	180303489	AT	A	840	PASS	-	-	-	-	-	Del	-	D	180303489	180303491	1	60	753.994	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	5	9	6	11	14	23	14	23	6	11	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711285963	4	182874843	AAAAG	A	540	PASS	-	-	-	-	-	Del	-	D	182874843	182874859	4	30	484.495	-	-	3	1	-	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	4	5	5	6	26	24	26	24	5	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711292389	5	7051788	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	7051788	7051795	1	63	745.662	-	-	6	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	6	8	10	10	26	29	26	31	10	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711297311	5	22079860	T	TTCACTTATCTA	493	PASS	CDH12	CCDS3890.1	r.?	-	-	Ins	intronic	I	22079860	22079872	11	78	804.085	-	-	1	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	12	5	10	4	21	23	23	24	12	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711298149	5	24853131	CT	C	780	PASS	-	-	-	-	-	Del	-	D	24853131	24853138	1	54	701.904	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	8	5	14	10	30	27	30	27	14	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711299383	5	28897736	TATC	T	418	PASS	-	-	-	-	-	Del	-	D	28897736	28897742	3	24	431.941	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	3	7	5	26	21	26	21	7	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711303139	5	40614487	A	AAG	900	PASS	-	-	-	-	-	Ins	-	I	40614487	40614494	2	60	791.827	-	-	3	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	11	4	12	6	25	13	27	13	12	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711306269	5	55137784	AT	A	269	PASS	-	-	-	-	-	Del	-	D	55137784	55137792	1	12	256.116	-	-	7	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	3	23	22	23	22	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711306833	5	56649240	TTTTCCAGATATACAATCA	T	293	PASS	-	-	-	-	-	Del	-	D	56649240	56649260	18	45	647.911	-	-	1	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	4	8	1	8	15	14	18	14	4	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711308897	5	64502467	CA	C	600	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Del	intronic	D	64502467	64502469	1	27	536.314	-	-	1	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	19	7	19	0	0	./.	2	8	4	10	12	18	12	18	4	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711312333	5	76610513	C	CT	780	PASS	PDE8B	CCDS4037.1	r.?	-	-	Ins	intronic	I	76610513	76610522	1	56	694.077	-	-	8	1	1	PDE8B|CCDS4037.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE8B|CCDS4037.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	20	24	20	0	0	./.	6	7	11	9	26	34	26	36	11	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711313215	5	79293211	A	ATG	389	PASS	-	-	-	-	-	Ins	-	I	79293211	79293229	2	18	369.519	-	-	8	1	-	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	5	2	7	2	28	25	29	25	7	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711315732	5	87177960	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	87177960	87177969	1	48	640.687	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	7	5	10	10	25	36	25	36	10	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711315820	5	87581985	AAATTTATGG	A	319	PASS	-	-	-	-	-	Del	-	D	87581985	87581995	9	36	593.919	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	8	3	10	4	23	13	23	13	10	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711322324	5	110994461	ATG	A	300	PASS	C5orf13	ENST00000514515	r.?	-	-	Del	downstream	D	110994461	110994478	2	12	269.963	-	-	8	1	-	C5orf13|ENST00000514515|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C5orf13|ENST00000514515|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	13	5	13	0	0	./.	3	2	3	2	25	27	25	27	3	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711323025	5	113269441	G	GT	629	PASS	-	-	-	-	-	Ins	-	I	113269441	113269442	1	42	586.694	-	-	0	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	6	5	8	7	20	19	21	19	8	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711323770	5	116121858	AG	A	660	PASS	-	-	-	-	-	Del	-	D	116121858	116121860	1	42	591.51	-	-	1	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	5	6	7	6	19	13	19	13	7	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711325755	5	123061862	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	123061862	123061878	2	12	269.963	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	3	2	25	30	25	30	3	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711327899	5	130661142	CT	C	540	PASS	CDC42SE2	CCDS34224.1	r.?	-	-	Del	intronic	D	130661142	130661147	1	28	484.729	-	-	4	1	1	CDC42SE2|CCDS34224.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDC42SE2|CCDS34224.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	6	8	13	25	29	25	29	8	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711330167	5	139825768	ATTTATTGGGTTAACTGTGAAGTTAACC	A	290	PASS	ANKHD1	CCDS4224.1	r.?	-	-	Del	intronic	D	139825768	139825796	27	32	539.926	-	-	1	1	1	ANKHD1|CCDS4224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKHD1|CCDS4224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	7	3	6	17	21	17	22	3	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711334553	5	155825135	GT	G	720	PASS	SGCD	CCDS47325.1	r.?	-	-	Del	intronic	D	155825135	155825139	1	49	646.707	-	-	3	1	1	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	6	8	8	20	28	20	28	8	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711335737	5	160011754	GT	G	840	PASS	ATP10B	CCDS43394.1	r.?	-	-	Del	intronic	D	160011754	160011756	1	60	755.897	-	-	1	1	1	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	9	11	12	24	23	24	23	11	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711341866	5	179892330	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	179892330	179892338	1	16	319.741	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	7	6	21	18	21	18	7	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711342494	6	963022	AC	A	2040	PASS	-	-	-	-	-	Del	-	D	963022	963025	1	320	1824.1	-	-	2	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	15	19	20	22	44	40	44	40	20	22	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711345894	6	9519550	ATTC	A	749	PASS	-	-	-	-	-	Del	-	D	9519550	9519559	3	56	698.493	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	6	7	8	8	38	37	38	37	8	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711346253	6	10416393	CG	C	1320	PASS	TFAP2A	CCDS4510.1	r.?	-	-	Del	upstream	D	10416393	10416397	1	144	1184.94	-	-	3	1	1	TFAP2A|CCDS4510.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TFAP2A|ENST00000482890|r.30delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	19	16	19	16	0	0	./.	11	11	17	15	31	28	31	28	17	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711360909	6	47807251	GT	G	1138	PASS	-	-	-	-	-	Del	-	D	47807251	47807253	1	117	1075.3	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	12	8	19	14	31	26	31	26	19	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711361154	6	48704511	A	AT	1260	PASS	-	-	-	-	-	Ins	-	I	48704511	48704517	1	132	1118.98	-	-	5	1	1	-	-	./.	0	0	0	0	7	24	7	24	0	0	./.	11	10	14	13	53	36	53	37	14	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711363156	6	54298973	CT	C	2160	PASS	-	-	-	-	-	Del	-	D	54298973	54298980	1	352	1939.15	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	21	15	28	21	52	41	52	41	28	21	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711363517	6	55083131	G	GT	2069	PASS	HCRTR2	CCDS4956.1	r.?	-	-	Ins	intronic	I	55083131	55083133	1	330	1862.36	-	-	1	1	1	HCRTR2|CCDS4956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HCRTR2|CCDS4956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	15	0	0	./.	21	14	26	15	43	31	43	31	26	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711366103	6	62861618	TAC	T	300	PASS	KHDRBS2	CCDS4963.1	r.?	-	-	Del	intronic	D	62861618	62861636	2	6	268.975	-	-	8	1	1	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	0	5	0	5	31	32	31	32	0	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711367177	6	65911706	T	TTG	929	PASS	EYS	CCDS47445.1	r.?	-	-	Ins	intronic	I	65911706	65911725	2	77	842.178	-	-	9	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	6	10	13	17	37	34	37	34	13	17	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711370796	6	75146139	TA	T	329	PASS	-	-	-	-	-	Del	-	D	75146139	75146141	1	7	315.666	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	6	0	9	0	37	23	37	23	9	0	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711371076	6	76230709	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	76230709	76230724	2	12	323.493	-	-	7	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	1	5	1	5	26	33	26	33	1	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711372078	6	78941257	A	ATATT	298	PASS	-	-	-	-	-	Ins	-	I	78941257	78941275	4	12	309.043	-	-	4	1	1	-	-	./.	0	0	0	0	5	8	5	15	0	0	./.	1	5	3	5	16	21	16	32	3	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711373630	6	83217180	AG	A	600	PASS	-	-	-	-	-	Del	-	D	83217180	83217182	1	32	539.155	-	-	1	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	7	3	8	4	38	47	38	47	8	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711375429	6	88549211	A	AT	596	PASS	-	-	-	-	-	Ins	-	I	88549211	88549219	1	40	638.557	-	-	7	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	9	3	13	5	39	32	39	32	13	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711377673	6	95095357	A	AT	2520	PASS	-	-	-	-	-	Ins	-	I	95095357	95095365	1	484	2235.55	-	-	7	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	21	21	29	26	59	44	59	44	29	26	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711377764	6	95334239	G	GT	1560	PASS	-	-	-	-	-	Ins	-	I	95334239	95334248	1	195	1386.15	-	-	8	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	12	14	18	17	39	33	39	33	18	17	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711378232	6	97020985	AATTC	A	540	PASS	FHL5	CCDS5035.1	r.?	-	-	Del	intronic	D	97020985	97021000	4	30	485.239	-	-	3	1	-	FHL5|CCDS5035.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FHL5|CCDS5035.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	4	5	8	10	34	35	34	35	8	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711378468	6	97738946	CAG	C	1380	PASS	-	-	-	-	-	Del	-	D	97738946	97738953	2	150	1235.24	-	-	3	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	9	14	14	19	23	33	23	33	14	19	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711384382	6	116226119	C	CA	1740	PASS	-	-	-	-	-	Ins	-	I	116226119	116226126	1	234	1534.65	-	-	6	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	17	12	22	15	29	22	29	22	22	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711384823	6	117931073	TC	T	1529	PASS	-	-	-	-	-	Del	-	D	117931073	117931079	1	171	1391.57	-	-	5	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	18	8	25	12	29	15	29	15	25	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711386559	6	124229503	TA	T	1620	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124229503	124229510	1	208	1455.72	-	-	6	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	15	12	22	16	29	17	29	17	22	16	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711387354	6	127933833	G	GA	1320	PASS	-	-	-	-	-	Ins	-	I	127933833	127933841	1	135	1169.28	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	14	8	23	13	34	21	34	21	23	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711388342	6	131744420	CACAT	C	300	PASS	-	-	-	-	-	Del	-	D	131744420	131744428	4	10	269.577	-	-	1	1	-	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	1	4	1	22	21	22	21	4	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711397047	6	165393180	A	AAT	300	PASS	-	-	-	-	-	Ins	-	I	165393180	165393190	2	12	263.557	-	-	4	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	2	3	4	5	9	9	9	9	4	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711401910	7	7270874	G	GT	300	PASS	C1GALT1	CCDS5355.1	r.?	-	-	Ins	intronic	I	7270874	7270884	1	12	265.889	-	-	9	1	1	C1GALT1|CCDS5355.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C1GALT1|CCDS5355.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	5	2	52	58	52	58	5	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711403135	7	10155432	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	10155432	10155442	1	12	261.072	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	4	2	54	55	54	55	4	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711403922	7	12149524	CT	C	1740	PASS	-	-	-	-	-	Del	-	D	12149524	12149531	1	238	1563.11	-	-	6	1	1	-	-	./.	0	0	0	0	8	22	8	22	0	0	./.	16	13	24	19	40	27	40	27	24	19	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711405378	7	15734012	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	15734012	15734017	2	12	323.402	-	-	2	1	1	-	-	./.	0	0	0	0	7	20	7	20	0	0	./.	1	5	2	5	40	64	40	64	2	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711405866	7	16928215	AT	A	360	PASS	-	-	-	-	-	Del	-	D	16928215	16928217	1	12	316.177	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	5	1	5	27	44	27	44	1	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711406088	7	17561791	G	GA	2516	PASS	-	-	-	-	-	Ins	-	I	17561791	17561797	1	520	2342.71	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	12	14	0	0	./.	25	19	31	23	57	35	58	37	31	23	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711406758	7	19214417	AG	A	1020	PASS	-	-	-	-	-	Del	-	D	19214417	19214420	1	84	915.702	-	-	2	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	11	6	15	7	55	57	55	57	15	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711409738	7	26047688	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	26047688	26047694	1	18	364.659	-	-	5	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	5	3	7	28	39	28	40	3	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711411255	7	29599320	TTG	T	300	PASS	PRR15	CCDS5421.1	r.?	-	-	Del	upstream	D	29599320	29599338	2	10	269.501	-	-	8	1	1	PRR15|CCDS5421.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PRR15|CCDS5421.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	7	18	7	0	0	./.	1	4	1	5	38	45	38	45	1	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711412471	7	32807807	C	CA	300	PASS	AVL9	ENST00000404479	r.?	-	-	Ins	intronic	I	32807807	32807817	1	6	266.491	-	-	9	1	1	AVL9|ENST00000404479|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AVL9|ENST00000404479|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	0	5	0	5	42	52	42	52	0	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711416689	7	43135422	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	43135422	43135438	2	12	267.093	-	-	7	1	-	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	2	3	42	24	42	24	2	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711423219	7	57847103	A	AT	1655	PASS	-	-	-	-	-	Ins	-	I	57847103	57847113	1	234	1531.8	-	-	9	1	1	-	-	./.	0	0	0	0	14	29	14	29	0	0	./.	12	17	26	29	54	72	54	73	26	29	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711423349	7	57946374	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	57946374	57946381	1	20	373.087	-	-	6	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	3	7	12	48	51	49	51	7	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711427493	7	69569777	C	CT	300	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	69569777	69569787	1	12	265.889	-	-	9	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	4	49	46	49	46	2	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711433249	7	84919325	TA	T	1709	PASS	-	-	-	-	-	Del	-	D	84919325	84919330	1	228	1549.86	-	-	4	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	18	11	20	14	39	29	39	29	20	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711443166	7	113288847	G	GA	1020	PASS	-	-	-	-	-	Ins	-	I	113288847	113288853	1	90	906.069	-	-	5	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	8	9	12	9	38	37	38	38	12	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711444706	7	118360355	C	CTC	329	PASS	-	-	-	-	-	Ins	-	I	118360353	118360356	2	15	316.177	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	2	0	1	37	31	38	31	4	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711446616	7	125367718	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	125367718	125367728	1	12	266.491	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	4	2	40	45	40	45	4	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711449614	7	134622067	TCAATCAGATACTCCCAGGAATGAGTGAGC	T	406	PASS	CALD1	CCDS5836.1	r.?	-	-	Del	intronic	D	134622067	134622098	29	60	748.583	-	-	1	1	1	CALD1|CCDS5836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALD1|CCDS5836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	9	5	8	4	22	16	23	17	9	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711451105	7	139405748	C	CGTACGAAGACAA	257	PASS	HIPK2	ENST00000406875	r.?	-	-	Ins	intronic	I	139405748	139405761	12	32	465.551	-	-	1	1	1	HIPK2|ENST00000406875|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HIPK2|ENST00000406875|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	23	12	0	0	./.	7	3	2	1	20	21	25	23	7	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711452599	7	144679275	GTT	G	300	PASS	-	-	-	-	-	Del	-	D	144679275	144679281	2	12	269.501	-	-	5	1	1	-	-	./.	0	0	0	0	21	2	21	2	0	0	./.	3	2	5	5	18	15	18	15	5	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711452736	7	145033359	G	GA	694	PASS	-	-	-	-	-	Ins	-	I	145033359	145033367	1	64	746.175	-	-	7	1	1	-	-	./.	0	0	0	0	19	17	20	18	0	0	./.	7	7	13	12	28	32	28	32	13	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711454593	7	150960857	GTCTC	G	658	PASS	SMARCD3	CCDS5924.1	r.?	-	-	Del	intronic	D	150960857	150960867	4	40	644.395	-	-	4	1	1	SMARCD3|CCDS5924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCD3|CCDS5924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	3	9	7	14	14	33	14	33	7	14	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711456898	7	157409808	T	TG	360	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Ins	intronic	I	157409808	157409816	1	16	318.585	-	-	7	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000222012|ENST00000409610|r.1807_1808insg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	11	18	11	0	0	./.	3	3	4	4	16	15	16	15	4	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711461574	8	16683573	T	TAC	360	PASS	-	-	-	-	-	Ins	-	I	16683573	16683584	2	16	316.504	-	-	5	1	-	-	-	./.	0	0	0	0	17	10	18	11	0	0	./.	3	3	5	8	14	14	14	14	5	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711465743	8	36189056	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	36189056	36189073	2	12	269.172	-	-	8	1	-	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	3	28	28	28	28	2	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711466825	8	39922541	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	39922541	39922543	1	12	320.116	-	-	1	1	1	-	-	./.	0	0	0	0	3	12	3	12	0	0	./.	1	5	1	6	26	36	26	36	1	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711467801	8	42917509	C	CT	1260	PASS	FNTA	CCDS6140.1	r.?	-	-	Ins	intronic	I	42917509	42917511	1	130	1116.19	-	-	1	1	1	FNTA|CCDS6140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FNTA|CCDS6140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	9	12	11	13	19	22	19	22	11	13	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711468656	8	48718012	ACACTT	A	598	PASS	PRKDC	ENST00000314191	r.?	-	-	Del	intronic	D	48718012	48718020	5	36	593.503	-	-	1	1	1	PRKDC|ENST00000314191|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKDC|ENST00000314191|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	22	14	22	0	0	./.	3	8	5	9	38	51	38	51	5	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711469050	8	49955027	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	49955027	49955047	2	15	322.525	-	-	9	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	2	4	4	4	54	36	54	36	4	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711470062	8	52708918	A	AC	300	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	intronic	I	52708918	52708921	1	6	260.141	-	-	2	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	0	7	3	51	56	51	56	7	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711470068	8	52724133	C	CAT	449	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	upstream	I	52724133	52724139	2	24	422.005	-	-	2	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	9	13	9	0	0	./.	5	3	8	5	52	49	53	49	8	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711473636	8	62027922	T	TTTTA	367	PASS	-	-	-	-	-	Ins	-	I	62027922	62027946	4	18	463.919	-	-	5	1	-	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	8	1	11	2	25	22	25	22	11	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711474546	8	64515310	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	64515310	64515317	1	90	906.996	-	-	6	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	8	9	11	9	65	63	65	63	11	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711474912	8	65864874	TA	T	600	PASS	-	-	-	-	-	Del	-	D	65864874	65864884	1	32	532.323	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	3	11	7	44	57	44	57	11	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711477401	8	72113666	ACT	A	300	PASS	EYA1	CCDS34906.1	r.?	-	-	Del	intronic	D	72113666	72113681	2	12	269.774	-	-	7	1	1	EYA1|CCDS34906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYA1|CCDS34906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	3	60	45	60	45	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711477770	8	73230798	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	73230798	73230807	1	24	426.22	-	-	8	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	6	7	50	60	50	63	6	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711479649	8	77793717	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	77793717	77793735	2	12	323.729	-	-	8	1	-	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	1	5	1	48	36	48	36	5	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711480224	8	79251054	G	GT	2609	PASS	-	-	-	-	-	Ins	-	I	79251054	79251062	1	513	2316.21	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	10	0	0	./.	26	18	35	23	64	40	65	40	35	23	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711484941	8	92131238	GACTA	G	449	PASS	LRRC69	CCDS47890.1	r.?	-	-	Del	intronic	D	92131238	92131247	4	24	431.036	-	-	2	1	1	LRRC69|CCDS47890.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC69|CCDS47890.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	3	7	6	58	55	58	55	7	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711486589	8	95960960	TCCAACGG	T	319	PASS	TP53INP1	CCDS47899.1	r.?	-	-	Del	intronic	D	95960960	95960970	7	40	583.87	-	-	1	1	1	TP53INP1|CCDS47899.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TP53INP1|CCDS47899.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	7	4	9	32	46	32	46	4	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711488364	8	100029733	TA	T	300	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100029733	100029735	1	10	259.539	-	-	1	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	5	2	37	41	37	41	5	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711488740	8	101060199	GT	G	360	PASS	RGS22	CCDS43758.1	r.?	-	-	Del	intronic	D	101060199	101060201	1	7	322.525	-	-	1	1	1	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	6	0	7	0	53	37	53	37	7	0	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711492840	8	110801951	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	110801951	110801966	2	12	269.774	-	-	7	1	-	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	3	3	50	53	50	53	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711493864	8	113554060	G	GA	720	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113554060	113554069	1	45	640.233	-	-	8	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	22	17	0	0	./.	8	4	9	5	55	43	56	43	9	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711494280	8	114720144	CT	C	300	PASS	-	-	-	-	-	Del	-	D	114720144	114720154	1	6	269.774	-	-	9	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	0	5	1	6	54	55	54	55	1	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711494512	8	115205341	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	115205341	115205350	1	30	480.174	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	16	14	0	0	./.	5	4	7	7	60	47	61	48	7	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711495025	8	116694834	TAC	T	300	PASS	TRPS1	ENST00000422939	r.?	-	-	Del	intronic	D	116694834	116694849	2	12	268.57	-	-	7	1	1	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	2	3	4	3	41	40	41	40	4	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711496922	8	121335504	G	GT	420	PASS	COL14A1	CCDS34938.1	r.?	-	-	Ins	intronic	I	121335504	121335514	1	20	370.459	-	-	9	1	1	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	26	21	26	0	0	./.	3	4	3	4	58	58	59	58	3	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711498094	8	124312221	TAC	T	329	PASS	-	-	-	-	-	Del	-	D	124312221	124312238	2	16	314.698	-	-	8	1	-	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	3	3	3	3	52	56	52	56	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711498471	8	125248866	A	AT	420	PASS	ENSG00000214803	ENST00000399016	r.?	-	-	Ins	intronic	I	125248866	125248868	1	20	368.653	-	-	1	1	1	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000214803|ENST00000399016|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	13	9	0	0	./.	4	3	5	4	62	54	63	55	5	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711498686	8	125718799	C	CT	780	PASS	MTSS1	CCDS6353.1	r.?	-	-	Ins	intronic	I	125718799	125718801	1	56	693.585	-	-	1	1	1	MTSS1|CCDS6353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTSS1|CCDS6353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	7	6	8	9	37	61	39	63	8	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711499391	8	127309627	AG	A	300	PASS	-	-	-	-	-	Del	-	D	127309627	127309629	1	6	257.733	-	-	1	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	5	0	7	0	51	50	51	50	7	0	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711501122	8	131524222	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	131524222	131524236	2	12	262.549	-	-	6	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	2	3	2	47	49	47	49	3	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711502579	8	135806054	GC	G	3240	PASS	-	-	-	-	-	Del	-	D	135806054	135806059	1	703	2903.93	-	-	4	1	1	-	-	./.	0	0	0	0	12	9	12	10	0	0	./.	36	18	47	28	66	40	66	40	47	28	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711504879	8	141806970	TAC	T	329	PASS	PTK2	CCDS6381.1	r.?	-	-	Del	intronic	D	141806970	141806988	2	15	323.729	-	-	8	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	15	3	15	0	0	./.	2	4	5	10	51	71	51	71	5	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711507665	9	5318601	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	5318601	5318607	1	40	589.045	-	-	5	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	7	8	9	30	30	30	30	8	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711508675	9	9093668	G	GC	1080	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	9093668	9093670	1	84	963.892	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	11	12	0	0	./.	5	13	9	15	28	25	28	25	9	15	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711510149	9	14408699	AT	A	2040	PASS	-	-	-	-	-	Del	-	D	14408699	14408704	1	315	1836.94	-	-	4	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	20	14	24	23	27	26	27	26	25	23	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711521621	9	76728405	CAA	C	600	PASS	-	-	-	-	-	Del	-	D	76728405	76728408	2	35	540.312	-	-	2	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	4	6	4	6	20	32	20	32	4	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711523106	9	81642726	ATAT	A	540	PASS	-	-	-	-	-	Del	-	D	81642726	81642734	3	30	487.365	-	-	2	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	5	4	5	4	22	22	22	22	5	4	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711524914	9	87571323	TC	T	600	PASS	NTRK2	CCDS6671.1	r.?	-	-	Del	intronic	D	87571323	87571325	1	36	541.516	-	-	1	1	1	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	5	7	7	16	21	16	21	7	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711525686	9	90219464	A	AT	600	PASS	DAPK1	CCDS43842.1	r.?	-	-	Ins	intronic	I	90219464	90219474	1	36	533.689	-	-	9	1	1	DAPK1|CCDS43842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAPK1|CCDS43842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	5	5	7	8	34	20	35	20	7	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711527948	9	98674659	TTG	T	269	PASS	C9orf102	CCDS35072.1	r.?	-	-	Del	intronic	D	98674659	98674675	2	12	270.758	-	-	7	1	-	C9orf102|CCDS35072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C9orf102|CCDS35072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	2	3	27	30	27	30	2	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711528951	9	102419089	AG	A	300	PASS	-	-	-	-	-	Del	-	D	102419089	102419092	1	12	270.758	-	-	2	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	5	26	25	26	25	3	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711530521	9	107725160	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	107725160	107725163	1	65	856.191	-	-	2	1	1	-	-	./.	0	0	0	0	10	2	10	2	0	0	./.	12	4	15	8	32	20	33	20	15	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711542649	X	9211595	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	9211595	9211605	1	12	258.927	-	-	9	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	3	2	2	1	31	26	31	26	4	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711543904	X	15193421	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	15193421	15193430	1	24	476.303	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	7	2	13	7	27	22	28	22	13	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711546231	X	24970657	GA	G	689	PASS	POLA1	CCDS14214.1	r.?	-	-	Del	intronic	D	24970657	24970667	1	48	650.323	-	-	9	1	1	POLA1|CCDS14214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLA1|CCDS14214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	7	5	9	8	18	25	18	25	9	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711548161	X	33118024	C	CA	660	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	33118024	33118033	1	36	589.506	-	-	8	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	8	3	10	7	29	31	29	31	10	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711548262	X	33472869	CTAA	C	807	PASS	-	-	-	-	-	Del	-	D	33472869	33472874	3	70	812.301	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	9	6	11	8	27	26	27	26	11	8	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711548962	X	37073277	TAATATTTCAAAAAGTTGATTTAA	T	261	PASS	-	-	-	-	-	Del	-	D	37073277	37073308	23	24	487.742	-	-	1	1	1	-	-	./.	0	0	0	0	15	5	15	5	0	0	./.	7	2	4	2	22	22	25	22	7	2	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711551312	X	47827765	C	CAT	420	PASS	ZNF81	ENST00000376950	r.?	-	-	Ins	intronic	I	47827765	47827776	2	18	370.926	-	-	5	1	-	ZNF81|ENST00000376950|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF81|ENST00000376950|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	2	5	8	10	30	35	30	35	8	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711553334	X	57606942	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	57606942	57606952	1	10	267.958	-	-	9	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	1	4	4	6	25	21	26	21	4	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711553892	X	64786497	CT	C	420	PASS	-	-	-	-	-	Del	-	D	64786497	64786507	1	20	379.355	-	-	9	1	1	-	-	./.	0	0	0	0	25	23	25	23	0	0	./.	4	3	11	5	29	16	29	16	11	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711554164	X	66185843	AT	A	389	PASS	-	-	-	-	-	Del	-	D	66185843	66185853	1	20	379.355	-	-	9	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	3	4	4	9	20	28	20	28	4	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711555716	X	73765219	A	AATGGG	480	PASS	-	-	-	-	-	Ins	-	I	73765219	73765249	5	24	409.466	-	-	5	1	-	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	3	6	3	31	26	31	26	6	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711555819	X	74384621	TA	T	900	PASS	-	-	-	-	-	Del	-	D	74384621	74384631	1	66	812.903	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	10	9	12	28	29	28	29	9	12	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711556542	X	78196917	A	AT	600	PASS	P2RY10	CCDS14442.1	r.?	-	-	Ins	upstream	I	78196917	78196924	1	27	535.313	-	-	6	1	1	P2RY10|CCDS14442.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	P2RY10|CCDS14442.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	11	19	11	0	0	./.	8	2	11	5	29	23	29	23	11	5	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711557240	X	81245054	AATGC	A	538	PASS	-	-	-	-	-	Del	-	D	81245054	81245061	4	36	541.936	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	5	5	6	6	28	26	28	26	6	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711557568	X	82623818	GA	G	300	PASS	-	-	-	-	-	Del	-	D	82623818	82623824	1	12	270.968	-	-	5	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	3	2	3	3	18	42	18	42	3	3	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711560279	X	93243779	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	93243779	93243786	1	35	534.711	-	-	6	1	1	-	-	./.	0	0	0	0	12	12	12	13	0	0	./.	4	6	6	7	28	29	29	29	6	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711563589	X	109715870	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	109715870	109715880	1	63	747.873	-	-	9	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	8	6	9	10	30	27	30	27	9	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711563745	X	110878884	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	110878884	110878902	2	12	323.957	-	-	8	1	-	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	5	1	5	1	22	23	22	23	5	1	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711563780	X	111057226	AT	A	480	PASS	TRPC5	CCDS14561.1	r.?	-	-	Del	intronic	D	111057226	111057228	1	16	433.549	-	-	1	1	1	TRPC5|CCDS14561.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPC5|CCDS14561.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	1	7	2	9	16	20	16	20	2	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711566661	X	123086443	T	TA	537	PASS	-	-	-	-	-	Ins	-	I	123086443	123086445	1	30	482.324	-	-	1	1	-	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	5	6	9	18	23	18	23	6	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711566679	X	123191804	G	GT	629	PASS	STAG2	CCDS43990.1	r.1903_1904insu	c.1393_1394insT	p.F468fs*5	Ins	frameshift	I	123191804	123191812	1	42	589.507	-	-	7	1	1	STAG2|CCDS43990.1|r.1903_1904insu|c.1393_1394insT|p.F468fs*5|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	STAG2|CCDS43990.1|r.1903_1904insu|c.1393_1394insT|p.F468fs*5|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	9	13	9	13	0	0	./.	6	5	8	6	19	18	19	18	8	6	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711567390	X	126282717	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	126282717	126282724	1	80	857.464	-	-	6	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	9	7	15	10	29	26	31	26	15	10	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711567435	X	126494329	A	AAT	480	PASS	-	-	-	-	-	Ins	-	I	126494329	126494340	2	21	422.711	-	-	5	1	1	-	-	./.	0	0	0	0	12	14	13	14	0	0	./.	2	6	4	7	18	31	18	31	4	7	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711569588	X	137607190	AAG	A	960	PASS	-	-	-	-	-	Del	-	D	137607190	137607195	2	77	862.281	-	-	2	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	10	6	11	9	25	24	25	24	11	9	1	1	1	1	1	1	1	1
2662629	PD18010a	PD18010b	2711571169	X	144583504	AC	A	420	PASS	-	-	-	-	-	Del	-	D	144583504	144583514	1	20	379.355	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	4	3	4	10	13	10	13	3	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719831839	1	7588485	GT	G	329	PASS	CAMTA1	CCDS30576.1	r.?	-	-	Del	intronic	D	7588485	7588492	1	12	322.128	-	-	6	1	1	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	1	5	2	5	20	21	20	21	2	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719836057	1	18680354	AC	A	689	PASS	IGSF21	CCDS184.1	r.?	-	-	Del	intronic	D	18680354	18680356	1	40	635.224	-	-	1	1	1	IGSF21|CCDS184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGSF21|CCDS184.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	9	7	9	21	30	21	30	7	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719841085	1	32466314	CTACT	C	387	PASS	-	-	-	-	-	Del	-	D	32466314	32466321	4	25	423.483	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	4	7	4	22	21	22	21	7	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719842498	1	37118055	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	37118055	37118061	1	64	736.579	-	-	5	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	7	7	10	7	28	25	28	25	10	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719844701	1	43466303	TATTTA	T	418	PASS	-	-	-	-	-	Del	-	D	43466303	43466312	5	24	425.289	-	-	1	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	3	5	4	6	21	30	21	30	4	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719859798	1	90975433	CTT	C	517	PASS	-	-	-	-	-	Del	-	D	90975433	90975437	2	28	483.191	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	6	6	10	18	28	18	28	6	10	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719868719	1	119451431	G	GCA	420	PASS	TBX15	CCDS30816.1	r.?	-	-	Ins	intronic	I	119451431	119451446	2	20	367.387	-	-	7	1	-	TBX15|CCDS30816.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBX15|CCDS30816.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	3	4	6	8	30	26	30	26	6	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719875129	1	152007997	AAATT	A	447	PASS	S100A11	CCDS1009.1	r.?	-	-	Del	intronic	D	152007997	152008004	4	28	483.191	-	-	1	1	1	S100A11|CCDS1009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	S100A11|CCDS1009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	6	3	7	3	33	27	33	27	7	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719876460	1	155691193	A	ATG	300	PASS	DAP3	CCDS1120.1	r.?	-	-	Ins	intronic	I	155691193	155691195	2	10	262.419	-	-	0	1	-	DAP3|CCDS1120.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAP3|CCDS1120.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	4	1	12	6	37	23	37	23	12	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719876856	1	156590184	GC	G	360	PASS	HAPLN2	CCDS1148.1	r.?	-	-	Del	intronic	D	156590184	156590187	1	16	322.128	-	-	2	1	1	HAPLN2|CCDS1148.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HAPLN2|CCDS1148.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	3	3	5	4	34	22	34	22	5	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719878706	1	162398073	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	162398073	162398082	1	15	315.505	-	-	8	1	1	-	-	./.	0	0	0	0	10	22	11	22	0	0	./.	2	4	3	7	28	30	28	30	3	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719883108	1	174315067	G	GT	300	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Ins	intronic	I	174315067	174315077	1	12	264.827	-	-	9	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	17	0	0	./.	2	3	2	3	32	34	32	34	2	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719885771	1	180937853	C	CA	300	PASS	STX6	CCDS1341.1	r.?	-	-	Ins	downstream	I	180937853	180937863	1	12	265.429	-	-	9	1	1	STX6|CCDS1341.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	STX6|CCDS1341.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	13	8	40	30	41	31	13	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719886667	1	183465973	C	CA	600	PASS	SMG7	CCDS1355.1	r.?	-	-	Ins	intronic	I	183465973	183465982	1	32	529.655	-	-	8	1	1	SMG7|CCDS1355.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMG7|CCDS1355.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	7	10	9	37	33	37	34	10	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719889680	1	191261898	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	191261898	191261902	1	9	422.279	-	-	3	1	1	-	-	./.	0	0	0	0	8	20	8	20	0	0	./.	0	8	3	9	29	49	29	49	3	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719898222	1	212499938	CA	C	300	PASS	PPP2R5A	CCDS1503.1	r.?	-	-	Del	intronic	D	212499938	212499948	1	10	268.44	-	-	9	1	1	PPP2R5A|CCDS1503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R5A|CCDS1503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	4	1	4	1	37	49	37	49	4	1	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719905364	1	230495806	AT	A	300	PASS	PGBD5	CCDS1583.1	r.?	-	-	Del	intronic	D	230495806	230495809	1	6	267.838	-	-	2	1	1	PGBD5|CCDS1583.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGBD5|CCDS1583.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	0	5	1	6	26	45	26	45	1	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719907736	1	236249974	CCGGAAGTACTGGAGGA	C	319	PASS	-	-	-	-	-	Del	-	D	236249974	236249991	16	36	589.965	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	8	3	8	15	30	15	30	3	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719908811	1	238049426	GC	G	1169	PASS	ZP4	CCDS1615.1	r.?	-	-	Del	intronic	D	238049426	238049429	1	120	1073.16	-	-	2	1	1	ZP4|CCDS1615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZP4|CCDS1615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	11	9	18	14	42	37	42	37	18	14	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719919138	10	12978986	CT	C	360	PASS	CCDC3	CCDS7093.1	r.?	-	-	Del	intronic	D	12978986	12978989	1	7	323.437	-	-	2	1	1	CCDC3|CCDS7093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC3|CCDS7093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	6	0	6	3	21	25	21	25	6	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719928285	10	37209644	A	ATT	360	PASS	-	-	-	-	-	Ins	-	I	37209644	37209647	2	12	316.212	-	-	2	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	1	5	2	8	14	35	15	36	2	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719928376	10	37528526	CAG	C	780	PASS	-	-	-	-	-	Del	-	D	37528526	37528531	2	44	700.781	-	-	2	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	10	5	11	25	31	25	31	5	11	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719934259	10	57492982	AC	A	389	PASS	-	-	-	-	-	Del	-	D	57492982	57492987	1	20	376.741	-	-	4	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	6	3	22	14	22	14	6	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719958623	10	131468959	AG	A	360	PASS	MGMT	CCDS7660.2	r.?	-	-	Del	intronic	D	131468959	131468961	1	16	323.437	-	-	1	1	1	MGMT|CCDS7660.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MGMT|CCDS7660.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	3	8	5	24	29	24	29	8	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719962445	11	7770735	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	7770735	7770744	1	18	373.248	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	5	5	8	24	24	24	24	5	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719979225	11	58685192	AC	A	360	PASS	-	-	-	-	-	Del	-	D	58685192	58685194	1	15	322.851	-	-	1	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	2	4	4	7	15	29	15	29	4	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719981706	11	65777962	TG	T	360	PASS	CST6	CCDS8126.1	r.?	-	-	Del	upstream	D	65777962	65777967	1	15	324.055	-	-	4	1	1	CST6|CCDS8126.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CST6|CCDS8126.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	6	4	18	15	18	15	6	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2719986415	11	80293669	TA	T	389	PASS	-	-	-	-	-	Del	-	D	80293669	80293673	1	18	378.064	-	-	3	1	1	-	-	./.	0	0	0	0	1	15	1	15	0	0	./.	2	5	2	8	9	23	9	23	2	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720005294	12	4110841	GT	G	420	PASS	-	-	-	-	-	Del	-	D	4110841	4110846	1	20	377.588	-	-	4	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	4	5	6	28	28	28	28	5	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720014139	12	27571998	AT	A	420	PASS	ARNTL2	CCDS8712.1	r.?	-	-	Del	intronic	D	27571998	27572002	1	18	376.384	-	-	3	1	1	ARNTL2|CCDS8712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARNTL2|CCDS8712.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	2	5	4	9	30	23	30	23	4	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720016158	12	32300365	AT	A	540	PASS	BICD1	CCDS8726.1	r.?	-	-	Del	intronic	D	32300365	32300369	1	30	486.245	-	-	3	1	1	BICD1|CCDS8726.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BICD1|CCDS8726.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	5	6	7	18	27	18	27	6	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720016940	12	34718145	TC	T	366	PASS	-	-	-	-	-	Del	-	D	34718145	34718147	1	20	376.986	-	-	1	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	3	7	5	21	27	21	27	7	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720019360	12	45490751	AG	A	660	PASS	-	-	-	-	-	Del	-	D	45490751	45490753	1	40	594.299	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	7	4	8	7	23	30	23	30	8	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720020090	12	47952599	CTT	C	540	PASS	-	-	-	-	-	Del	-	D	47952599	47952604	2	30	486.245	-	-	4	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	4	6	5	20	18	20	18	6	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720021839	12	51972856	AG	A	300	PASS	-	-	-	-	-	Del	-	D	51972856	51972859	1	12	270.136	-	-	2	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	4	13	20	13	20	2	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720024609	12	60294138	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	60294138	60294140	1	20	373.976	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	15	9	0	0	./.	3	4	5	5	15	19	15	19	5	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720030981	12	80029154	CT	C	480	PASS	PAWR	CCDS31863.1	r.?	-	-	Del	intronic	D	80029154	80029156	1	25	432.217	-	-	1	1	1	PAWR|CCDS31863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAWR|CCDS31863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	4	6	5	16	23	16	23	6	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720032512	12	85754091	TA	T	300	PASS	-	-	-	-	-	Del	-	D	85754091	85754099	1	6	265.922	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	0	5	1	8	18	23	18	23	1	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720047218	13	19263715	C	CT	391	PASS	-	-	-	-	-	Ins	-	I	19263715	19263719	1	25	427.103	-	-	3	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	4	4	4	4	32	36	34	36	4	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720053480	13	34127429	TA	T	360	PASS	-	-	-	-	-	Del	-	D	34127429	34127432	1	7	324.842	-	-	2	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	0	6	2	7	13	25	13	25	2	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720058813	13	49566718	TTAG	T	627	PASS	FNDC3A	CCDS41886.1	r.?	-	-	Del	intronic	D	49566718	49566725	3	48	649.685	-	-	2	1	1	FNDC3A|CCDS41886.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FNDC3A|CCDS41886.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	5	7	7	8	30	26	30	26	7	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720062891	13	61521571	AC	A	337	PASS	-	-	-	-	-	Del	-	D	61521571	61521578	1	16	324.842	-	-	6	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	5	6	21	18	21	18	5	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720083722	14	26101067	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	26101067	26101077	1	36	582.868	-	-	9	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	8	3	10	6	28	29	28	29	10	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720084704	14	29127127	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	29127127	29127132	1	20	375.13	-	-	4	1	1	-	-	./.	0	0	0	0	20	17	21	17	0	0	./.	3	4	6	4	26	27	26	27	6	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720087727	14	38011305	CA	C	329	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Del	intronic	D	38011305	38011308	1	12	323.346	-	-	2	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	1	5	3	6	20	20	20	20	3	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720097839	14	69259420	C	CA	360	PASS	ZFP36L1	CCDS9791.1	r.?	-	-	Ins	intronic	I	69259420	69259424	1	15	306.489	-	-	3	1	1	ZFP36L1|CCDS9791.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFP36L1|CCDS9791.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	14	12	0	0	./.	2	4	4	4	20	15	21	15	4	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720118821	15	41883328	GC	G	348	PASS	-	-	-	-	-	Del	-	D	41883328	41883336	1	18	379.51	-	-	7	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	2	6	3	22	11	22	11	6	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720125725	15	62676774	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	62676774	62676782	1	10	266.864	-	-	7	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	1	4	3	8	26	33	26	33	3	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720135877	15	93445934	G	GT	360	PASS	CHD2	CCDS10374.2	r.?	-	-	Ins	intronic	I	93445934	93445942	1	16	320.477	-	-	7	1	1	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	3	3	5	3	15	24	15	25	5	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720143439	16	11293728	CCT	C	720	PASS	-	-	-	-	-	Del	-	D	11293728	11293732	2	48	649.036	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	7	5	8	5	23	10	23	10	8	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720145963	16	17964485	AGTTT	A	257	PASS	-	-	-	-	-	Del	-	D	17964485	17964494	4	10	268.525	-	-	2	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	1	4	1	6	17	27	17	27	1	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720151374	16	32509336	G	GT	437	PASS	-	-	-	-	-	Ins	-	I	32509336	32509343	1	28	481.659	-	-	6	1	1	-	-	./.	0	0	0	0	33	33	35	34	0	0	./.	3	6	5	8	52	62	52	62	5	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720153179	16	35122520	T	TTA	420	PASS	-	-	-	-	-	Ins	-	I	35122520	35122532	2	14	370.878	-	-	5	1	1	-	-	./.	0	0	0	0	10	12	11	12	0	0	./.	1	6	3	7	19	26	20	27	3	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720159656	16	68846091	GT	G	480	PASS	CDH1	CCDS10869.1	r.1254delU	c.1063delT	p.L355fs*1	Del	frameshift	D	68846091	68846094	1	24	431.687	-	-	2	1	1	CDH1|CCDS10869.1|r.1254delU|c.1063delT|p.L355fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CDH1|CCDS10869.1|r.1254delU|c.1063delT|p.L355fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	5	12	5	0	0	./.	3	5	3	6	10	20	10	20	3	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720198208	18	20067570	T	TTG	269	PASS	-	-	-	-	-	Ins	-	I	20067570	20067572	2	6	256.985	-	-	0	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	5	0	1	0	18	11	18	11	5	0	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720199863	18	26221744	GT	G	300	PASS	-	-	-	-	-	Del	-	D	26221744	26221750	1	10	271.435	-	-	5	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	4	1	5	3	18	14	18	14	5	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720202979	18	38216995	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	38216995	38217002	1	12	268.424	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	3	3	6	13	21	13	21	3	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720203590	18	40345143	GA	G	360	PASS	RIT2	CCDS11921.1	r.?	-	-	Del	intronic	D	40345143	40345151	1	12	325.722	-	-	7	1	1	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	1	7	4	26	9	26	9	7	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720206075	18	49774265	CT	C	660	PASS	-	-	-	-	-	Del	-	D	49774265	49774272	1	42	597.156	-	-	6	1	1	-	-	./.	0	0	0	0	4	16	4	16	0	0	./.	6	5	6	5	15	15	15	15	6	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720208596	18	57622453	ACCT	A	538	PASS	-	-	-	-	-	Del	-	D	57622453	57622460	3	36	542.869	-	-	2	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	5	5	5	16	18	16	18	5	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720233135	19	45938844	ACAAG	A	360	PASS	-	-	-	-	-	Del	-	D	45938844	45938849	4	15	325.316	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	2	6	3	19	13	19	13	6	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720249604	2	32616896	GCCA	G	269	PASS	BIRC6	CCDS33175.2	r.?	-	-	Del	intronic	D	32616896	32616903	3	12	268.856	-	-	2	1	1	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	5	2	21	17	21	17	5	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720257054	2	54924957	CTGTT	C	509	PASS	-	-	-	-	-	Del	-	D	54924957	54924971	4	28	481.532	-	-	3	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	6	3	6	6	21	28	21	28	7	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720257197	2	55339454	A	AT	480	PASS	RTN4	ENST00000427710	r.?	-	-	Ins	intronic	I	55339454	55339459	1	24	421.741	-	-	4	1	1	RTN4|ENST00000427710|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RTN4|ENST00000427710|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	5	4	7	22	16	22	16	4	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720266749	2	86752135	CTA	C	749	PASS	VPS24	CCDS33236.1	r.?	-	-	Del	intronic	D	86752135	86752144	2	54	697.821	-	-	4	1	1	VPS24|CCDS33236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS24|CCDS33236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	8	5	8	6	22	31	22	31	8	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720285790	2	151113701	CTT	C	720	PASS	-	-	-	-	-	Del	-	D	151113701	151113704	2	45	643.448	-	-	2	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	8	4	10	21	28	21	28	4	10	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720288399	2	159521313	AATAAAGTGAATATTAATACCTGCCTT	A	290	PASS	PKP4	CCDS33306.1	r.?	-	-	Del	intronic	D	159521313	159521348	26	35	534.099	-	-	1	1	1	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKP4|CCDS33306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	4	6	4	5	19	21	19	22	4	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720290923	2	167732028	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	167732028	167732030	1	20	372.184	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	11	0	0	./.	3	4	5	4	28	16	29	16	5	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720298080	2	190724999	AC	A	300	PASS	PMS1	CCDS2302.1	r.?	-	-	Del	intronic	D	190724999	190725001	1	12	268.856	-	-	1	1	1	PMS1|CCDS2302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PMS1|CCDS2302.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	8	4	28	24	28	24	8	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720304357	2	209421613	CAG	C	389	PASS	-	-	-	-	-	Del	-	D	209421613	209421618	2	20	375.796	-	-	2	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	4	3	6	7	20	26	20	26	6	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720304805	2	210914440	CAG	C	329	PASS	C2orf67	CCDS33370.1	r.?	-	-	Del	intronic	D	210914440	210914444	2	16	319.015	-	-	1	1	1	C2orf67|CCDS33370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf67|CCDS33370.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	3	6	5	28	22	28	22	6	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720311350	2	230554244	G	GA	269	PASS	DNER	CCDS33390.1	r.?	-	-	Ins	intronic	I	230554244	230554254	1	12	262.233	-	-	9	1	1	DNER|CCDS33390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNER|CCDS33390.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	17	9	0	0	./.	3	2	3	2	18	22	18	22	3	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720311550	2	231186037	AATGC	A	415	PASS	SP140	ENST00000420434	r.?	-	-	Del	intronic	D	231186037	231186043	4	14	376.398	-	-	1	1	1	SP140|ENST00000420434|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP140|ENST00000420434|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	1	6	1	6	16	27	16	27	1	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720320884	20	16488042	GCATT	G	267	PASS	KIF16B	CCDS13122.1	r.?	-	-	Del	intronic	D	16488042	16488050	4	15	326.062	-	-	1	1	1	KIF16B|CCDS13122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF16B|CCDS13122.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	2	5	4	18	16	18	16	5	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720329013	20	42380650	CCTT	C	480	PASS	-	-	-	-	-	Del	-	D	42380650	42380656	3	24	430.535	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	5	5	5	19	17	19	17	5	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720345967	21	32549920	T	TC	420	PASS	TIAM1	CCDS13609.1	r.?	-	-	Ins	intronic	I	32549920	32549928	1	14	371.734	-	-	7	1	1	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TIAM1|CCDS13609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	14	0	0	./.	1	6	2	6	12	33	12	33	2	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720363652	3	1045518	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	1045518	1045533	2	12	269.318	-	-	7	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	2	3	2	21	12	21	12	3	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720369920	3	19488936	TCTTA	T	809	PASS	KCNH8	CCDS2632.1	r.?	-	-	Del	intronic	D	19488936	19488944	4	60	754.09	-	-	1	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	9	5	9	6	21	26	21	26	9	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720372871	3	28964047	AT	A	360	PASS	-	-	-	-	-	Del	-	D	28964047	28964057	1	15	323.181	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	5	2	20	30	20	30	5	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720375496	3	36868391	G	GA	300	PASS	TRANK1	CCDS46789.1	r.8804_8805insu	c.?	p.?	Ins	3'UTR variant	I	36868391	36868401	1	12	266.308	-	-	9	1	1	TRANK1|CCDS46789.1|r.8804_8805insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TRANK1|CCDS46789.1|r.8804_8805insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	10	10	11	10	0	0	./.	3	2	4	2	18	28	19	28	4	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720389029	3	76556928	TA	T	540	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76556928	76556934	1	28	483.568	-	-	5	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	3	6	4	6	16	21	16	21	4	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720391554	3	85152180	CCAAGG	C	538	PASS	CADM2	ENST00000383699	r.?	-	-	Del	intronic	D	85152180	85152186	5	35	538.636	-	-	1	1	1	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	4	6	4	9	28	20	28	20	4	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720395413	3	100800097	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	100800097	100800107	1	10	255.47	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	6	17	26	17	26	1	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720397311	3	106471677	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	106471677	106471683	1	18	372.831	-	-	5	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	5	2	7	18	33	18	33	2	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720405929	3	133632911	GT	G	600	PASS	-	-	-	-	-	Del	-	D	133632911	133632920	1	32	537.432	-	-	8	1	1	-	-	./.	0	0	0	0	1	15	1	15	0	0	./.	3	7	6	8	23	19	23	19	6	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720406353	3	135221332	TG	T	300	PASS	-	-	-	-	-	Del	-	D	135221332	135221335	1	12	269.318	-	-	2	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	3	4	13	21	13	21	3	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720408213	3	141490138	CA	C	360	PASS	-	-	-	-	-	Del	-	D	141490138	141490141	1	16	322.579	-	-	2	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	3	3	5	8	12	18	12	18	5	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720410209	3	147270991	CT	C	389	PASS	-	-	-	-	-	Del	-	D	147270991	147271001	1	20	376.443	-	-	9	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	3	5	4	21	26	21	26	5	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720415295	3	163335468	AG	A	449	PASS	-	-	-	-	-	Del	-	D	163335468	163335472	1	21	429.102	-	-	3	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	2	6	2	9	20	25	20	25	2	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720420714	3	180664839	TTTTTA	T	507	PASS	FXR1	CCDS33894.1	r.?	-	-	Del	intronic	D	180664839	180664849	5	35	536.83	-	-	1	1	1	FXR1|CCDS33894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FXR1|CCDS33894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	4	6	5	7	26	20	26	21	5	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720433504	4	20771445	TTC	T	358	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	20771445	20771454	2	20	375.13	-	-	4	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	4	3	6	16	18	16	18	3	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720433658	4	21224235	AAT	A	300	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21224235	21224240	2	10	269.24	-	-	2	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	1	4	1	5	18	18	18	18	1	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720436755	4	30591503	T	TAC	540	PASS	-	-	-	-	-	Ins	-	I	30591503	30591519	2	18	473.795	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	12	9	0	0	./.	8	1	0	2	26	17	27	17	8	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720438213	4	35536089	AC	A	360	PASS	-	-	-	-	-	Del	-	D	35536089	35536091	1	15	321.884	-	-	1	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	4	2	8	3	31	18	31	18	8	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720441611	4	44036120	AT	A	360	PASS	-	-	-	-	-	Del	-	D	44036120	44036122	1	12	311.649	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	5	5	10	26	24	26	24	5	10	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720447020	4	61057950	TG	T	360	PASS	-	-	-	-	-	Del	-	D	61057950	61057960	1	16	321.884	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	3	6	4	20	29	20	29	6	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720448347	4	64685758	ATCT	AT	300	PASS	-	-	-	-	-	Complex	-	DI	64685759	64685761	3	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	2	0	0	31	18	31	18	3	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720449983	4	69143824	AC	A	300	PASS	-	-	-	-	-	Del	-	D	69143824	69143826	1	12	268.638	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	3	3	4	31	36	31	36	3	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720461127	4	104089459	A	AGG	600	PASS	CENPE	CCDS34042.1	r.?	-	-	Ins	intronic	I	104089459	104089462	2	32	525.837	-	-	2	1	1	CENPE|CCDS34042.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CENPE|CCDS34042.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	7	4	8	21	19	21	19	4	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720462463	4	109079828	C	CA	660	PASS	LEF1	CCDS3679.1	r.?	-	-	Ins	intronic	I	109079828	109079838	1	42	580.287	-	-	9	1	1	LEF1|CCDS3679.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LEF1|CCDS3679.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	6	6	7	23	29	23	29	6	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720469237	4	130581306	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	130581306	130581316	2	12	269.24	-	-	4	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	4	5	26	22	26	22	4	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720473097	4	142631583	C	CT	300	PASS	IL15	CCDS3755.1	r.?	-	-	Ins	intronic	I	142631583	142631592	1	12	264.424	-	-	8	1	1	IL15|CCDS3755.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	IL15|CCDS3755.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	27	23	27	0	0	./.	3	2	7	2	30	29	31	29	7	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720483227	4	174103301	ACTT	A	300	PASS	GALNT7	CCDS3815.1	r.?	-	-	Del	intronic	D	174103301	174103308	3	10	267.434	-	-	2	1	1	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	1	4	1	6	19	20	19	20	1	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720492563	5	5473949	G	GT	360	PASS	KIAA0947	CCDS47187.1	r.?	-	-	Ins	intronic	I	5473949	5473953	1	12	319.344	-	-	3	1	1	KIAA0947|CCDS47187.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0947|CCDS47187.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	1	5	4	8	30	35	30	35	4	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720493737	5	8722414	TG	T	480	PASS	-	-	-	-	-	Del	-	D	8722414	8722417	1	25	431.411	-	-	2	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	4	4	4	19	29	19	29	4	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720499232	5	24972721	AT	A	360	PASS	-	-	-	-	-	Del	-	D	24972721	24972727	1	12	323.559	-	-	5	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	5	1	6	9	21	9	21	1	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720504781	5	40799706	T	TG	480	PASS	PRKAA1	CCDS3932.2	r.?	-	-	Ins	upstream	I	40799706	40799713	1	16	426.595	-	-	6	1	1	PRKAA1|CCDS3932.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PRKAA1|CCDS3932.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	17	17	17	17	0	0	./.	1	7	2	9	25	31	25	31	2	9	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720510158	5	62315945	TCTC	T	420	PASS	-	-	-	-	-	Del	-	D	62315945	62315952	3	18	377.485	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	2	5	2	27	27	27	27	5	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720511440	5	66261608	CTTGAA	C	269	PASS	MAST4	CCDS47225.1	r.?	-	-	Del	intronic	D	66261608	66261615	5	10	269.632	-	-	1	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	4	1	4	1	32	10	32	10	4	1	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720512532	5	70817603	CAG	C	958	PASS	BDP1	CCDS43328.1	r.?	-	-	Del	intronic	D	70817603	70817606	2	90	916.749	-	-	1	1	1	BDP1|CCDS43328.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BDP1|CCDS43328.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	9	8	10	11	29	29	29	29	10	11	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720521548	5	101330053	TA	T	360	PASS	-	-	-	-	-	Del	-	D	101330053	101330059	1	15	323.559	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	2	5	3	25	20	25	20	5	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720523317	5	107364094	GAT	G	360	PASS	FBXL17	ENST00000359660	r.?	-	-	Del	intronic	D	107364094	107364099	2	16	323.559	-	-	2	1	1	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXL17|ENST00000359660|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	3	3	3	4	25	19	25	19	3	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720524229	5	110618390	AT	A	420	PASS	CAMK4	CCDS4103.1	r.?	-	-	Del	intronic	D	110618390	110618396	1	18	377.485	-	-	5	1	1	CAMK4|CCDS4103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK4|CCDS4103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	5	2	6	3	23	29	23	29	6	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720525969	5	116438411	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	116438411	116438431	2	10	269.632	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	1	4	3	22	23	22	23	4	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720529621	5	128512830	C	CT	449	PASS	-	-	-	-	-	Ins	-	I	128512830	128512840	1	21	424.789	-	-	9	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	6	2	7	5	26	16	27	17	7	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720534379	5	145029569	ACT	A	329	PASS	-	-	-	-	-	Del	-	D	145029569	145029574	2	16	323.559	-	-	2	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	3	3	4	4	21	19	21	19	4	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720541146	5	167486737	CTTG	C	300	PASS	ODZ2	ENST00000403607	r.?	-	-	Del	intronic	D	167486737	167486745	3	6	269.632	-	-	2	1	1	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ2|ENST00000403607|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	5	0	8	1	29	13	29	13	8	1	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720560315	6	37992082	T	TA	420	PASS	ZFAND3	CCDS4836.1	r.?	-	-	Ins	intronic	I	37992082	37992089	1	20	372.727	-	-	6	1	1	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	16	10	0	0	./.	4	3	4	6	16	20	16	20	4	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720565996	6	57035072	C	CT	900	PASS	ZNF451	CCDS43477.1	r.5235_5236insu	c.?	p.?	Ins	3'UTR variant	I	57035072	57035073	1	70	798.787	-	-	0	1	1	ZNF451|CCDS43477.1|r.5235_5236insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ZNF451|CCDS43477.1|r.5235_5236insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	9	15	9	15	0	0	./.	9	6	11	11	32	39	32	39	11	11	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720574915	6	86388184	TC	T	329	PASS	SNORD50A	ENST00000384338	r.?	-	-	Del	upstream	D	86388184	86388186	1	16	321.803	-	-	1	1	1	SNORD50A|ENST00000384338|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	SNORD50A|ENST00000384338|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	3	5	16	10	16	10	3	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720575645	6	89015553	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	89015553	89015557	1	28	475.178	-	-	3	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	3	6	8	11	18	24	18	24	8	11	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720581297	6	109950833	G	GA	360	PASS	AKD1	CCDS5077.1	r.?	-	-	Ins	downstream	I	109950833	109950839	1	16	317.588	-	-	5	1	1	AKD1|CCDS5077.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	AKD1|ENST00000341338|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	3	3	4	3	23	34	23	34	4	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720583673	6	116915989	T	TA	360	PASS	RWDD1	CCDS34520.1	r.2536_2537insa	c.?	p.?	Ins	3'UTR variant	I	116915989	116915996	1	15	319.394	-	-	6	1	1	RWDD1|CCDS34520.1|r.2536_2537insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	RWDD1|CCDS34520.1|r.2536_2537insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	15	14	15	0	0	./.	4	2	4	2	18	15	18	15	4	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720584933	6	120805478	TAATAG	T	540	PASS	-	-	-	-	-	Del	-	D	120805478	120805488	5	30	485.413	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	4	5	4	6	18	26	18	26	4	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720587239	6	128672162	TAA	T	600	PASS	PTPRK	CCDS47473.1	r.?	-	-	Del	intronic	D	128672162	128672167	2	36	539.348	-	-	4	1	1	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	5	7	7	22	25	22	25	7	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720588589	6	133253790	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	133253790	133253791	1	10	266.664	-	-	0	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	4	1	5	1	23	13	23	13	5	1	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720591268	6	142565465	A	AC	480	PASS	-	-	-	-	-	Ins	-	I	142565465	142565466	1	21	426.06	-	-	0	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	6	4	7	19	20	19	21	4	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720592612	6	147503891	CATGGA	C	387	PASS	-	-	-	-	-	Del	-	D	147503891	147503900	5	24	429.672	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	5	3	7	13	25	13	25	3	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720594496	6	152312928	GT	G	420	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152312928	152312931	1	14	377.544	-	-	2	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	6	1	7	3	23	14	23	14	7	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720598052	6	162791347	AT	A	569	PASS	PARK2	CCDS5281.1	r.?	-	-	Del	intronic	D	162791347	162791357	1	35	538.746	-	-	9	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	6	4	7	4	19	21	19	21	7	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720603473	7	7794468	A	AT	660	PASS	ENSG00000219545	ENST00000433511	r.?	-	-	Ins	intronic	I	7794468	7794476	1	42	586.562	-	-	7	1	1	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000219545|ENST00000433511|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	16	0	0	./.	6	5	10	5	33	27	34	28	10	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720604890	7	12240704	TAA	T	689	PASS	-	-	-	-	-	Del	-	D	12240704	12240708	2	48	645.906	-	-	3	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	7	6	13	29	33	29	33	6	13	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720643684	7	130541722	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	130541722	130541726	2	10	267.823	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	1	11	3	19	13	19	13	11	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720648901	7	146862143	A	AT	600	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	146862143	146862145	1	36	532.636	-	-	1	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	5	5	6	8	26	19	26	19	6	8	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720652786	7	157328597	GTC	G	1320	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	downstream	D	157328597	157328603	2	140	1182.76	-	-	2	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	15	16	15	0	0	./.	9	13	13	17	26	26	26	26	13	17	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720654264	8	2678118	C	CT	389	PASS	-	-	-	-	-	Ins	-	I	2678118	2678127	1	20	373.239	-	-	8	1	1	-	-	./.	0	0	0	0	24	19	24	20	0	0	./.	4	3	4	6	31	26	32	26	4	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720659521	8	16813022	CATA	C	298	PASS	AC079193.1	ENST00000513892	r.?	-	-	Del	intronic	D	16813022	16813028	3	16	315.016	-	-	1	1	1	AC079193.1|ENST00000513892|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC079193.1|ENST00000513892|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	3	3	3	21	23	21	23	3	3	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720659698	8	17302285	G	GT	298	PASS	-	-	-	-	-	Ins	-	I	17302285	17302294	1	15	315.618	-	-	8	1	1	-	-	./.	0	0	0	0	18	14	19	14	0	0	./.	2	4	2	5	23	30	23	30	2	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720676922	8	76610815	CT	C	389	PASS	-	-	-	-	-	Del	-	D	76610815	76610818	1	20	378.055	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	4	4	25	29	25	29	4	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720681005	8	90583371	ATTC	A	387	PASS	-	-	-	-	-	Del	-	D	90583371	90583377	3	21	432.063	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	2	6	6	7	18	34	18	34	6	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720686488	8	108985509	T	TG	480	PASS	RSPO2	CCDS6307.1	r.?	-	-	Ins	intronic	I	108985509	108985518	1	25	423.634	-	-	8	1	1	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	4	4	5	15	19	16	19	4	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720688827	8	116655578	C	CA	300	PASS	TRPS1	CCDS6318.2	r.?	-	-	Ins	intronic	I	116655578	116655581	1	10	267.029	-	-	2	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	1	6	4	30	13	30	13	6	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720690834	8	123199309	TG	T	720	PASS	-	-	-	-	-	Del	-	D	123199309	123199312	1	49	646.89	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	6	6	7	7	26	30	26	30	7	7	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720710408	9	38059379	C	CA	480	PASS	SHB	CCDS43806.1	r.?	-	-	Ins	intronic	I	38059379	38059381	1	21	427.771	-	-	1	1	1	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	10	0	0	./.	6	2	10	4	23	15	23	15	10	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720718475	9	83155627	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	83155627	83155629	1	24	427.169	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	15	11	0	0	./.	5	3	6	4	25	23	25	23	6	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720719924	9	87605642	T	TG	300	PASS	NTRK2	CCDS6671.1	r.?	-	-	Ins	intronic	I	87605642	87605647	1	12	267.357	-	-	4	1	1	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NTRK2|CCDS6671.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	3	4	23	21	24	21	3	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720728871	9	116330364	TATAG	T	329	PASS	RGS3	CCDS43869.1	r.?	-	-	Del	intronic	D	116330364	116330382	4	16	322.032	-	-	4	1	1	RGS3|CCDS43869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS3|CCDS43869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	3	6	4	23	17	23	17	7	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720731891	9	126221831	AT	A	300	PASS	DENND1A	CCDS35133.1	r.?	-	-	Del	intronic	D	126221831	126221833	1	10	269.163	-	-	1	1	1	DENND1A|CCDS35133.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DENND1A|CCDS35133.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	4	1	20	21	20	21	4	1	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720736439	9	138524454	AC	A	389	PASS	GLT6D1	CCDS43900.1	r.?	-	-	Del	intronic	D	138524454	138524456	1	20	378.514	-	-	1	1	1	GLT6D1|CCDS43900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLT6D1|CCDS43900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	3	4	3	6	16	25	16	25	3	6	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720738538	X	7022946	GT	G	300	PASS	HDHD1A	CCDS48075.1	r.?	-	-	Del	intronic	D	7022946	7022955	1	12	268.417	-	-	8	1	1	HDHD1A|CCDS48075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HDHD1A|CCDS48075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	3	2	4	2	25	18	25	18	4	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720744069	X	35988480	A	AT	300	PASS	CXorf22	CCDS14237.2	r.?	-	-	Ins	intronic	I	35988480	35988490	1	12	267.815	-	-	9	1	1	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	3	2	3	2	27	17	27	19	3	2	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720747318	X	54026131	CAGAA	C	478	PASS	PHF8	CCDS14355.1	r.?	-	-	Del	intronic	D	54026131	54026143	4	30	487.486	-	-	2	1	1	PHF8|CCDS14355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHF8|CCDS14355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	5	4	6	5	12	17	12	17	6	5	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720752035	X	83849856	TA	T	329	PASS	-	-	-	-	-	Del	-	D	83849856	83849866	1	16	324.99	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	3	3	7	4	22	15	22	15	7	4	1	1	1	1	1	1	1	1
2662672	PD18170a	PD18170b	2720760837	X	127380739	AG	A	360	PASS	-	-	-	-	-	Del	-	D	127380739	127380741	1	15	324.99	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	5	4	17	14	17	14	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714431792	1	5011116	G	GT	720	PASS	-	-	-	-	-	Ins	-	I	5011116	5011126	1	48	638.05	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	9	7	0	0	./.	7	5	10	5	24	21	25	21	10	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714442962	1	35535545	A	ATG	540	PASS	ZMYM1	ENST00000417119	r.?	-	-	Ins	intronic	I	35535545	35535557	2	30	473.119	-	-	5	1	1	ZMYM1|ENST00000417119|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZMYM1|ENST00000417119|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	4	5	5	9	28	35	28	35	5	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714443770	1	37944183	AG	A	600	PASS	ZC3H12A	CCDS417.1	r.?	-	-	Del	intronic	D	37944183	37944187	1	27	537.729	-	-	3	1	1	ZC3H12A|CCDS417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZC3H12A|CCDS417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	8	2	10	3	20	10	20	10	10	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714444868	1	40805511	CT	C	420	PASS	-	-	-	-	-	Del	-	D	40805511	40805515	1	14	374.002	-	-	3	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	6	1	11	2	20	16	20	16	11	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714447954	1	51299074	T	TG	660	PASS	FAF1	CCDS554.1	r.?	-	-	Ins	intronic	I	51299074	51299080	1	30	574.644	-	-	5	1	1	FAF1|CCDS554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAF1|CCDS554.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	9	4	11	21	28	21	29	4	11	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714448270	1	52357639	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	52357639	52357648	1	24	425.367	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	5	5	10	25	34	25	34	5	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714454731	1	72858949	TC	T	660	PASS	-	-	-	-	-	Del	-	D	72858949	72858951	1	40	590.297	-	-	1	1	1	-	-	./.	0	0	0	0	1	11	1	11	0	0	./.	4	7	7	8	23	30	23	30	7	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714456321	1	77913479	CAA	C	720	PASS	AK5	CCDS676.1	r.?	-	-	Del	intronic	D	77913479	77913483	2	33	645.274	-	-	3	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	10	5	17	17	31	17	31	5	17	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714458410	1	84322147	C	CT	900	PASS	-	-	-	-	-	Ins	-	I	84322147	84322157	1	70	796.358	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	9	6	12	10	35	29	35	30	12	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714464086	1	102244022	AT	A	300	PASS	-	-	-	-	-	Del	-	D	102244022	102244032	1	12	267.058	-	-	9	1	1	-	-	./.	0	0	0	0	10	2	10	2	0	0	./.	3	2	4	5	22	18	22	18	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714469969	1	121312413	AC	A	598	PASS	-	-	-	-	-	Del	-	D	121312413	121312416	1	36	591.502	-	-	2	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	8	3	10	4	31	33	31	33	10	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714477508	1	160204439	AACTT	A	478	PASS	DCAF8	CCDS1200.1	r.?	-	-	Del	intronic	D	160204439	160204447	4	28	483.956	-	-	1	1	1	DCAF8|CCDS1200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF8|CCDS1200.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	6	4	7	17	26	17	26	4	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714482701	1	176980698	TAC	T	300	PASS	ASTN1	CCDS1319.1	r.?	-	-	Del	intronic	D	176980698	176980718	2	6	268.262	-	-	9	1	-	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	0	6	0	21	12	21	12	6	0	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714484151	1	181069105	TCA	T	660	PASS	-	-	-	-	-	Del	-	D	181069105	181069108	2	42	591.502	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	5	6	7	19	15	19	15	6	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714485185	1	184561866	GTGACAAAAATTACCTAACTCA	G	261	PASS	C1orf21	CCDS1362.1	r.?	-	-	Del	intronic	D	184561866	184561889	21	30	483.354	-	-	1	1	1	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	5	4	5	4	18	16	18	16	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714486599	1	188990673	CA	C	480	PASS	-	-	-	-	-	Del	-	D	188990673	188990676	1	25	430.183	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	4	4	7	29	36	29	36	4	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714486875	1	189705523	GT	G	540	PASS	-	-	-	-	-	Del	-	D	189705523	189705532	1	30	483.956	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	5	4	6	27	21	27	21	4	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714487215	1	190716671	CT	C	780	PASS	-	-	-	-	-	Del	-	D	190716671	190716678	1	54	699.047	-	-	6	1	1	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	5	8	9	10	23	23	23	23	9	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714489061	1	196083982	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	196083982	196083991	1	15	318.423	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	13	0	0	./.	2	4	3	5	23	29	23	29	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714496950	1	219991713	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	219991713	219991729	2	12	265.854	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	2	4	3	20	30	20	30	4	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714498631	1	225195228	G	GA	360	PASS	DNAH14	CCDS44321.1	r.1304_1305insa	c.1089_1090insA	p.S365fs*11	Ins	frameshift	I	225195228	225195233	1	15	319.025	-	-	4	1	1	DNAH14|CCDS44321.1|r.1304_1305insa|c.1089_1090insA|p.S365fs*11|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	DNAH14|CCDS44321.1|r.1304_1305insa|c.1089_1090insA|p.S365fs*11|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	8	6	8	6	0	0	./.	4	2	4	3	18	31	18	31	4	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714504836	1	242316501	GT	G	845	PASS	PLD5	CCDS1621.1	r.?	-	-	Del	intronic	D	242316501	242316511	1	80	859.764	-	-	9	1	1	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	4	6	4	0	0	./.	7	9	13	13	26	28	26	28	13	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714508166	10	1859080	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	1859080	1859086	1	30	480.069	-	-	5	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	5	4	7	4	32	22	32	22	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714511579	10	9920291	GC	G	269	PASS	-	-	-	-	-	Del	-	D	9920291	9920296	1	12	263.093	-	-	4	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	2	3	6	3	20	15	20	15	6	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714516804	10	25002733	ATATCCATTTGT	A	464	PASS	ARHGAP21	CCDS7144.2	r.?	-	-	Del	intronic	D	25002733	25002745	11	72	863.089	-	-	1	1	1	ARHGAP21|CCDS7144.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP21|CCDS7144.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	11	5	13	5	30	17	30	17	13	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714519758	10	32160669	ACTAT	A	447	PASS	ARHGAP12	CCDS7170.1	r.?	-	-	Del	intronic	D	32160669	32160680	4	30	485.488	-	-	2	1	1	ARHGAP12|CCDS7170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP12|CCDS7170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	4	5	6	6	24	22	24	22	6	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714520979	10	35792787	TAAC	T	538	PASS	CCNY	CCDS7189.1	r.?	-	-	Del	intronic	D	35792787	35792792	3	32	539.431	-	-	1	1	1	CCNY|CCDS7189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCNY|CCDS7189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	7	6	10	16	23	16	23	6	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714521584	10	37703777	TTGG	T	896	PASS	-	-	-	-	-	Del	-	D	37703777	37703783	3	90	915.828	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	9	8	10	9	29	33	29	33	10	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714529083	10	62124691	A	AT	300	PASS	ANK3	CCDS7258.1	r.?	-	-	Ins	intronic	I	62124691	62124701	1	12	266.705	-	-	9	1	1	ANK3|CCDS7258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANK3|CCDS7258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	12	6	30	21	30	21	12	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714529358	10	63324214	GA	G	780	PASS	-	-	-	-	-	Del	-	D	63324214	63324223	1	50	700.056	-	-	8	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	9	4	15	6	28	15	28	15	15	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714529475	10	63679876	A	AT	660	PASS	ARID5B	CCDS31208.1	r.?	-	-	Ins	intronic	I	63679876	63679886	1	40	584.945	-	-	9	1	1	ARID5B|CCDS31208.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARID5B|CCDS31208.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	17	11	0	0	./.	4	7	7	8	25	31	25	31	7	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714536622	10	83856362	C	CAA	420	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	83856362	83856369	2	18	368.571	-	-	6	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	5	3	5	32	31	32	32	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714537719	10	87656352	AAATAGAAGTAGACGTGATGATCAATCAAGAAATATTAAAAGTGTTTGACTTAGCTAATAAGC	A	319	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	87656352	87656417	62	30	592.772	-	-	1	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	9	2	0	0	22	7	31	9	9	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714539828	10	94581187	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	94581187	94581194	1	48	638.888	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	5	7	10	11	23	36	23	38	10	11	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714544065	10	106643735	A	AGG	269	PASS	SORCS3	CCDS7558.1	r.?	-	-	Ins	intronic	I	106643735	106643744	2	12	262.491	-	-	8	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	3	2	1	0	17	30	17	30	4	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714545493	10	111215286	T	TA	898	PASS	-	-	-	-	-	Ins	-	I	111215286	111215289	1	81	845.027	-	-	2	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	8	8	11	9	22	21	22	22	11	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714551775	10	129908646	ACT	A	600	PASS	MKI67	CCDS7659.1	r.2786_2787delAG	c.2410_2411delAG	p.S804fs*18	Del	frameshift	D	129908646	129908653	2	36	538.227	-	-	3	1	1	MKI67|CCDS7659.1|r.2786_2787delAG|c.2410_2411delAG|p.S804fs*18|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MKI67|CCDS7659.1|r.2786_2787delAG|c.2410_2411delAG|p.S804fs*18|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	15	14	15	14	0	0	./.	5	5	6	5	24	27	24	27	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714562210	11	27895721	GTTGT	G	484	PASS	-	-	-	-	-	Del	-	D	27895721	27895730	4	32	541.089	-	-	2	1	1	-	-	./.	0	0	0	0	4	16	4	16	0	0	./.	3	7	5	7	16	15	16	15	5	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714564868	11	37463747	G	GA	389	PASS	-	-	-	-	-	Ins	-	I	37463747	37463755	1	20	374.547	-	-	7	1	1	-	-	./.	0	0	0	0	3	22	3	22	0	0	./.	4	3	4	4	17	17	17	17	4	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714567413	11	45618524	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	45618524	45618532	1	18	372.741	-	-	7	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	5	9	5	24	15	24	15	9	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714579101	11	88849780	AG	A	389	PASS	-	-	-	-	-	Del	-	D	88849780	88849788	1	20	378.762	-	-	7	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	3	4	4	5	18	22	18	22	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714588421	11	119604291	CAG	C	840	PASS	PVRL1	CCDS8426.1	r.?	-	-	Del	upstream	D	119604291	119604295	2	64	752.707	-	-	1	1	1	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PVRL1|CCDS8426.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	8	12	8	0	0	./.	7	7	10	8	17	16	17	16	10	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714589214	11	122865690	GA	G	749	PASS	-	-	-	-	-	Del	-	D	122865690	122865696	1	54	701.609	-	-	5	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	8	5	9	7	15	15	15	15	9	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714589504	11	123831924	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	123831924	123831933	1	24	426.85	-	-	8	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	3	8	5	19	12	19	12	8	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714589950	11	125500972	G	GA	540	PASS	CHEK1	CCDS8459.1	r.?	-	-	Ins	intronic	I	125500972	125500980	1	28	481.561	-	-	7	1	1	CHEK1|CCDS8459.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHEK1|CCDS8459.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	6	5	8	23	31	23	31	5	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714600312	12	20799550	TG	T	480	PASS	PDE3A	CCDS31754.1	r.?	-	-	Del	intronic	D	20799550	20799552	1	25	432.34	-	-	1	1	1	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	5	4	24	29	24	29	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714603528	12	29487951	AG	A	360	PASS	FAR2	CCDS8717.1	r.?	-	-	Del	downstream	D	29487951	29487953	1	16	324.255	-	-	1	1	1	FAR2|CCDS8717.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAR2|CCDS8717.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	4	8	4	8	0	0	./.	3	3	4	5	20	23	20	23	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714606580	12	41152113	TA	T	689	PASS	-	-	-	-	-	Del	-	D	41152113	41152116	1	45	644.898	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	8	11	13	30	30	30	30	11	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714606910	12	41985715	GA	G	360	PASS	-	-	-	-	-	Del	-	D	41985715	41985718	1	7	323.653	-	-	2	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	0	6	1	7	18	20	18	20	1	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714610158	12	51744206	CTTGT	C	420	PASS	GALNT6	CCDS8813.1	r.?	-	-	Del	downstream	D	51744206	51744225	4	18	378.298	-	-	4	1	1	GALNT6|CCDS8813.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CELA1|CCDS8812.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	6	9	17	19	17	19	6	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714615133	12	67231045	TTAGAG	T	412	PASS	-	-	-	-	-	Del	-	D	67231045	67231053	5	40	594.468	-	-	1	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	4	7	3	7	17	22	18	22	4	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714616091	12	69974934	A	AT	780	PASS	FRS2	CCDS41809.1	r.?	-	-	Ins	downstream	I	69974934	69974937	1	50	694.726	-	-	2	1	1	FRS2|CCDS41809.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CCT2|CCDS8991.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	8	11	8	0	0	./.	4	9	10	12	21	27	21	27	10	12	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714617700	12	75498586	T	TA	689	PASS	KCNC2	CCDS9005.1	r.?	-	-	Ins	intronic	I	75498586	75498588	1	49	636.469	-	-	1	1	1	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	6	6	9	8	26	24	26	24	9	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714620514	12	85491720	AG	A	600	PASS	LRRIQ1	CCDS41816.1	r.?	-	-	Del	intronic	D	85491720	85491723	1	35	540.426	-	-	2	1	1	LRRIQ1|CCDS41816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRIQ1|CCDS41816.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	6	4	7	6	27	25	27	25	7	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714620549	12	85641916	TATA	T	592	PASS	LRRIQ1	CCDS41816.1	r.?	-	-	Del	downstream	D	85641916	85641926	3	45	648.511	-	-	3	1	1	LRRIQ1|CCDS41816.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LRRIQ1|CCDS41816.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	4	10	4	0	0	./.	4	8	7	9	17	26	17	27	7	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714622959	12	93997960	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	93997960	93997968	1	21	427.524	-	-	7	1	-	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	6	2	7	4	33	30	33	30	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714626270	12	103409358	TTCTC	T	358	PASS	-	-	-	-	-	Del	-	D	103409358	103409366	4	18	373.481	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	5	5	5	23	19	23	19	5	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714630192	12	116397572	ATG	A	660	PASS	MED13L	CCDS9177.1	r.8337_8338delCA	c.?	p.?	Del	3'UTR variant	D	116397572	116397576	2	42	592.662	-	-	1	1	1	MED13L|CCDS9177.1|r.8337_8338delCA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MED13L|CCDS9177.1|r.8337_8338delCA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	14	9	14	0	0	./.	5	6	8	7	24	24	24	24	8	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714634778	12	127947823	TTTG	T	360	PASS	-	-	-	-	-	Del	-	D	127947823	127947838	3	15	324.255	-	-	4	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	4	5	8	26	22	26	22	5	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714642074	13	35700672	G	GA	929	PASS	NBEA	CCDS45026.1	r.?	-	-	Ins	intronic	I	35700672	35700681	1	81	854.949	-	-	8	1	1	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NBEA|CCDS45026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	8	8	8	14	11	24	11	25	8	14	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714642524	13	37781685	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	37781685	37781687	1	20	374.417	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	5	3	6	5	6	5	5	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714645081	13	48039044	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	48039044	48039051	1	18	375.621	-	-	6	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	2	8	3	18	14	18	14	8	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714650948	13	71223922	TAA	T	480	PASS	-	-	-	-	-	Del	-	D	71223922	71223927	2	9	434.097	-	-	4	1	1	-	-	./.	0	0	0	0	0	11	0	11	0	0	./.	0	8	0	12	5	21	5	21	0	12	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714653115	13	78936714	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	78936714	78936721	1	10	268.301	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	1	4	4	4	20	25	21	25	4	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714656336	13	89508758	CAT	C	540	PASS	-	-	-	-	-	Del	-	D	89508758	89508762	2	30	488.359	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	4	6	5	28	25	28	25	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714660857	13	102360046	C	CA	480	PASS	ITGBL1	CCDS9499.1	r.?	-	-	Ins	intronic	I	102360046	102360054	1	24	428.679	-	-	7	1	1	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITGBL1|CCDS9499.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	8	5	8	0	0	./.	3	5	3	6	21	24	21	24	3	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714668560	14	29276253	G	GAC	420	PASS	-	-	-	-	-	Ins	-	I	29276253	29276273	2	20	370.319	-	-	9	1	-	-	-	./.	0	0	0	0	3	13	3	13	0	0	./.	3	4	5	8	27	29	28	30	5	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714671449	14	37871292	TAA	T	600	PASS	MIPOL1	CCDS9664.1	r.?	-	-	Del	intronic	D	37871292	37871295	2	32	542.788	-	-	2	1	1	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIPOL1|CCDS9664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	3	7	7	10	19	27	19	27	7	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714671497	14	38058565	AACG	A	569	PASS	FOXA1	CCDS9665.1	r.?	-	-	Del	downstream	D	38058565	38058571	3	35	542.788	-	-	1	1	1	FOXA1|CCDS9665.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FOXA1|CCDS9665.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	13	8	13	0	0	./.	6	4	6	5	26	27	26	27	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714674540	14	47560760	TA	T	480	PASS	MDGA2	CCDS41948.1	r.?	-	-	Del	intronic	D	47560760	47560766	1	25	434.231	-	-	5	1	1	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	4	4	5	5	27	18	27	18	5	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714689467	14	102620562	G	GT	269	PASS	WDR20	CCDS9968.1	r.?	-	-	Ins	intronic	I	102620562	102620564	1	12	268.384	-	-	1	1	1	WDR20|CCDS9968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR20|CCDS9968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	2	3	3	3	11	11	12	11	3	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714691361	15	20854636	TTTCA	T	389	PASS	-	-	-	-	-	Del	-	D	20854636	20854645	4	18	380.191	-	-	2	1	1	-	-	./.	0	0	0	0	24	9	24	9	0	0	./.	5	2	5	3	48	21	49	21	6	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714699525	15	49026409	C	CAT	300	PASS	CEP152	CCDS42033.1	r.?	-	-	Ins	downstream	I	49026409	49026425	2	10	265.544	-	-	7	1	-	CEP152|CCDS42033.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CEP152|CCDS42033.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	9	12	9	0	0	./.	4	1	5	2	15	7	15	7	5	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714703644	15	62067429	AT	A	780	PASS	-	-	-	-	-	Del	-	D	62067429	62067433	1	50	704.865	-	-	3	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	9	4	10	8	26	25	26	25	10	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714707175	15	73030632	AAAGG	A	298	PASS	BBS4	CCDS10246.1	r.2306_2309delAAGG	c.?	p.?	Del	3'UTR variant	D	73030632	73030640	4	15	325.878	-	-	1	1	1	BBS4|CCDS10246.1|r.2306_2309delAAGG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	BBS4|CCDS10246.1|r.2306_2309delAAGG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	6	4	14	16	14	16	6	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714708971	15	79019054	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	79019054	79019056	1	12	268.555	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	3	7	4	13	11	13	11	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714709784	15	81816954	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	81816954	81816962	1	10	268.555	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	1	4	1	5	21	12	21	12	1	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714711137	15	86927057	C	CT	420	PASS	AGBL1	ENST00000421325	r.?	-	-	Ins	intronic	I	86927057	86927065	1	20	375.977	-	-	7	1	1	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	3	6	4	19	14	19	15	6	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714719699	16	8288923	AT	A	749	PASS	-	-	-	-	-	Del	-	D	8288923	8288932	1	54	703.968	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	5	8	7	9	30	27	30	27	7	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714723959	16	17390033	CTGCGGT	CA	551	PASS	XYLT1	CCDS10569.1	r.?	-	-	Complex	intronic	DI	17390034	17390039	6	104	0	-	-	0	1	1	XYLT1|CCDS10569.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	XYLT1|CCDS10569.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	7	12	0	0	14	30	15	30	7	12	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714736963	16	62974495	CA	C	420	PASS	-	-	-	-	-	Del	-	D	62974495	62974504	1	20	379.384	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	3	5	4	17	14	17	14	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714737965	16	68004466	AAAAC	A	449	PASS	SLC12A4	CCDS10855.1	r.?	-	-	Del	upstream	D	68004466	68004486	4	24	431.173	-	-	4	1	1	SLC12A4|CCDS10855.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SLC12A4|CCDS10855.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	16	15	16	0	0	./.	3	5	3	5	9	9	9	9	3	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714747224	17	11220684	CT	C	300	PASS	SHISA6	CCDS45615.1	r.?	-	-	Del	intronic	D	11220684	11220694	1	12	268.35	-	-	9	1	1	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	3	3	6	9	6	9	3	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714749327	17	19832567	G	GA	540	PASS	AKAP10	CCDS11214.1	r.?	-	-	Ins	intronic	I	19832567	19832575	1	30	479.539	-	-	7	1	1	AKAP10|CCDS11214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AKAP10|CCDS11214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	4	7	4	17	13	17	13	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714751225	17	26630706	A	AC	540	PASS	-	-	-	-	-	Ins	-	I	26630706	26630715	1	28	481.345	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	17	0	0	./.	3	6	5	7	13	30	13	31	5	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714761918	17	57097751	G	GA	300	PASS	TRIM37	CCDS32694.1	r.?	-	-	Ins	intronic	I	57097751	57097761	1	12	267.748	-	-	9	1	1	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIM37|CCDS32694.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	20	26	21	0	0	./.	3	2	3	3	50	37	51	37	3	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714767544	17	66215843	T	TTA	420	PASS	-	-	-	-	-	Ins	-	I	66215843	66215845	2	20	370.633	-	-	0	1	1	-	-	./.	0	0	0	0	9	10	9	11	0	0	./.	4	3	8	4	58	53	58	54	8	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714767882	17	66665948	CAG	C	660	PASS	-	-	-	-	-	Del	-	D	66665948	66665953	2	42	595.669	-	-	2	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	6	7	7	50	63	50	63	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714769384	17	70133005	AAAT	A	660	PASS	-	-	-	-	-	Del	-	D	70133005	70133009	3	40	595.669	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	7	5	10	27	37	27	37	5	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714783301	18	25975771	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	25975771	25975779	1	24	429.358	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	5	5	5	21	13	21	13	5	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714784780	18	30995662	TA	T	337	PASS	C18orf34	CCDS42424.1	r.?	-	-	Del	intronic	D	30995662	30995671	1	15	325.631	-	-	8	1	1	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C18orf34|CCDS42424.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	3	4	16	14	16	14	3	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714784966	18	31797240	CT	C	360	PASS	NOL4	CCDS11907.2	r.?	-	-	Del	intronic	D	31797240	31797250	1	12	325.631	-	-	9	1	1	NOL4|CCDS11907.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOL4|CCDS11907.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	1	5	2	8	16	29	16	29	2	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714792521	18	56503960	AT	A	509	PASS	-	-	-	-	-	Del	-	D	56503960	56503964	1	24	484.232	-	-	3	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	2	7	6	6	15	23	15	23	6	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714809146	19	23482038	AAAAC	A	420	PASS	-	-	-	-	-	Del	-	D	23482038	23482056	4	20	380.164	-	-	4	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	6	5	23	13	23	13	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714809603	19	24446830	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	24446830	24446838	1	12	268.535	-	-	7	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	4	2	15	10	15	10	4	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714816505	19	47890109	AAAG	A	389	PASS	DHX34	CCDS12700.1	r.?	-	-	Del	downstream	D	47890109	47890115	3	14	373.541	-	-	1	1	1	DHX34|CCDS12700.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DHX34|CCDS12700.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	17	9	17	0	0	./.	6	1	7	2	17	12	18	12	8	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714820606	19	58008867	TAAG	T	480	PASS	ZNF419	CCDS46211.1	r.?	-	-	Del	downstream	D	58008867	58008873	3	24	434.473	-	-	1	1	1	ZNF419|CCDS46211.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF773|CCDS33134.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	5	5	25	16	25	17	5	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714831885	2	34840181	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	34840181	34840182	1	15	318.091	-	-	0	1	1	-	-	./.	0	0	0	0	16	16	17	16	0	0	./.	4	2	5	5	14	24	14	24	5	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714834191	2	41646237	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	41646237	41646239	1	16	319.295	-	-	1	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	3	3	4	3	19	18	19	19	4	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714834658	2	43029775	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	43029775	43029784	1	12	319.295	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	17	0	0	./.	5	1	6	1	41	26	41	26	6	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714838803	2	56883776	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	56883776	56883784	1	18	372.511	-	-	7	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	5	3	8	24	41	24	41	3	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714838986	2	57535524	A	ACCATC	259	PASS	-	-	-	-	-	Ins	-	I	57535524	57535530	5	32	508.077	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	7	3	7	3	25	24	26	24	8	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714840783	2	63463520	TA	T	360	PASS	C2orf86	CCDS42688.1	r.?	-	-	Del	intronic	D	63463520	63463525	1	16	322.908	-	-	4	1	1	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	3	3	4	5	12	19	12	19	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714845350	2	78713252	CA	C	757	PASS	-	-	-	-	-	Del	-	D	78713252	78713254	1	54	699.634	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	8	5	14	7	27	11	27	11	14	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714848503	2	89844482	ATGGAATCATC	A	261	PASS	-	-	-	-	-	Del	-	D	89844482	89844494	10	18	484.362	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	8	1	0	0	70	38	70	39	8	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714852845	2	106381044	TCAAAGTGCAAA	TCAAAG	261	PASS	NCK2	CCDS33266.1	r.?	-	-	Complex	intronic	DI	106381045	106381055	11	30	0	-	-	0	1	1	NCK2|CCDS33266.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	NCK2|CCDS33266.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	4	0	0	17	10	17	11	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714853284	2	107684015	CT	C	420	PASS	-	-	-	-	-	Del	-	D	107684015	107684023	1	18	376.726	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	5	6	5	26	26	26	26	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714853505	2	108604333	GT	G	300	PASS	SLC5A7	CCDS2074.1	r.?	-	-	Del	intronic	D	108604333	108604343	1	12	269.09	-	-	9	1	1	SLC5A7|CCDS2074.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC5A7|CCDS2074.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	3	3	5	19	27	19	27	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714854030	2	110276667	TGTATTTTTA	T	330	PASS	-	-	-	-	-	Del	-	D	110276667	110276680	9	40	644.611	-	-	1	1	1	-	-	./.	0	0	0	0	9	3	9	3	0	0	./.	9	3	9	3	22	14	22	14	9	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714854088	2	110406500	A	AAT	360	PASS	-	-	-	-	-	Ins	-	I	110406500	110406501	2	12	309.662	-	-	0	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	1	5	2	6	13	20	13	22	2	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714856151	2	118560259	GT	G	720	PASS	-	-	-	-	-	Del	-	D	118560259	118560261	1	45	644.009	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	8	4	9	13	24	13	24	4	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714860106	2	131623958	G	GA	569	PASS	ARHGEF4	ENST00000409359	r.?	-	-	Ins	intronic	I	131623958	131623967	1	35	523.128	-	-	8	1	1	ARHGEF4|ENST00000409359|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ARHGEF4|ENST00000409359|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	6	8	7	19	28	19	28	8	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714860115	2	131663162	GC	G	480	PASS	ARHGEF4	ENST00000409359	r.?	-	-	Del	intronic	D	131663162	131663170	1	16	428.135	-	-	7	1	1	ARHGEF4|ENST00000409359|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ARHGEF4|ENST00000409359|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	1	7	4	7	17	19	17	19	4	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714864751	2	145333135	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	145333135	145333144	1	15	314.479	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	5	4	21	21	21	21	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714865055	2	146437829	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	146437829	146437837	1	60	745.023	-	-	7	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	5	9	7	12	22	26	23	26	7	12	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714876195	2	182225252	CT	C	420	PASS	-	-	-	-	-	Del	-	D	182225252	182225256	1	20	376.726	-	-	3	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	4	3	7	3	27	23	27	23	7	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714877698	2	187489096	C	CT	420	PASS	ITGAV	CCDS2292.1	r.?	-	-	Ins	intronic	I	187489096	187489100	1	20	372.511	-	-	3	1	1	ITGAV|CCDS2292.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITGAV|CCDS2292.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	3	4	4	6	27	31	27	31	4	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714878263	2	189356264	GA	G	840	PASS	GULP1	CCDS2295.1	r.?	-	-	Del	intronic	D	189356264	189356268	1	60	753.452	-	-	3	1	1	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	9	13	13	32	32	32	32	13	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714883494	2	206272533	GA	G	420	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	206272533	206272543	1	20	376.726	-	-	9	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	4	7	18	39	18	39	4	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714886095	2	214381571	G	GA	629	PASS	SPAG16	CCDS2396.1	r.?	-	-	Ins	intronic	I	214381571	214381578	1	42	585.375	-	-	6	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	6	5	9	6	20	20	20	20	9	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714891535	2	230683169	GA	G	300	PASS	TRIP12	CCDS33391.1	r.1544delU	c.1365delT	p.Q456fs*30	Del	frameshift	D	230683169	230683172	1	12	269.09	-	-	2	1	1	TRIP12|CCDS33391.1|r.1544delU|c.1365delT|p.Q456fs*30|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TRIP12|CCDS33391.1|r.1544delU|c.1365delT|p.Q456fs*30|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	3	3	18	24	18	24	3	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714892006	2	231956044	C	CT	360	PASS	PSMD1	CCDS2482.1	r.?	-	-	Ins	intronic	I	231956044	231956047	1	15	318.693	-	-	2	1	1	PSMD1|CCDS2482.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PSMD1|CCDS2482.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	5	3	19	16	19	16	5	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714892528	2	233547573	T	TA	720	PASS	EFHD1	CCDS2497.1	r.?	-	-	Ins	downstream	I	233547573	233547575	1	48	637.387	-	-	1	1	1	EFHD1|CCDS2497.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	EFHD1|CCDS2497.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	11	11	11	11	0	0	./.	7	5	9	9	26	25	26	25	9	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714893669	2	236861254	T	TA	300	PASS	AGAP1	CCDS33408.1	r.?	-	-	Ins	intronic	I	236861254	236861263	1	10	261.865	-	-	8	1	1	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	4	1	4	3	17	29	17	29	4	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714893812	2	237384240	TA	T	660	PASS	IQCA1	CCDS46549.1	r.?	-	-	Del	intronic	D	237384240	237384242	1	42	591.998	-	-	1	1	1	IQCA1|CCDS46549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCA1|CCDS46549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	6	5	8	7	30	19	30	19	8	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714895430	2	243018144	AC	A	840	PASS	-	-	-	-	-	Del	-	D	243018144	243018146	1	55	752.247	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	10	4	11	5	17	26	17	26	11	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714898432	20	6518178	TG	T	600	PASS	-	-	-	-	-	Del	-	D	6518178	6518181	1	27	542.808	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	8	2	12	4	34	22	34	22	12	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714899906	20	10879574	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	10879574	10879589	2	6	271.404	-	-	7	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	0	5	0	44	25	44	25	5	0	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714902425	20	17949497	GC	G	600	PASS	SNX5	CCDS13130.1	r.126delG	c.?	p.?	Del	5'UTR variant	D	17949497	17949499	1	35	539.798	-	-	1	1	1	SNX5|CCDS13130.1|r.126delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	SNX5|CCDS13130.1|r.126delG|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	18	9	18	9	0	0	./.	4	6	7	7	24	23	24	23	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714903818	20	21784817	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	21784817	21784836	2	12	270.802	-	-	9	1	-	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	2	3	2	3	24	31	24	31	2	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714906832	20	29930732	CT	C	627	PASS	-	-	-	-	-	Del	-	D	29930732	29930741	1	45	651.37	-	-	8	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	8	4	11	5	37	34	37	34	11	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714912757	20	45273076	A	AT	300	PASS	SLC13A3	CCDS42886.1	r.?	-	-	Ins	intronic	I	45273076	45273086	1	12	268.394	-	-	9	1	1	SLC13A3|CCDS42886.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SLC13A3|CCDS42886.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	2	3	2	35	30	35	31	3	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714914579	20	49270711	C	CT	660	PASS	FAM65C	CCDS13431.2	r.?	-	-	Ins	intronic	I	49270711	49270721	1	42	586.252	-	-	9	1	1	FAM65C|CCDS13431.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM65C|CCDS13431.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	6	12	9	37	22	37	22	12	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714916793	20	53918612	G	GA	569	PASS	-	-	-	-	-	Ins	-	I	53918612	53918620	1	35	534.981	-	-	7	1	-	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	4	7	4	31	37	31	37	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714918581	20	58952551	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	58952551	58952560	1	50	696.017	-	-	8	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	4	9	10	10	35	40	35	40	10	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714921980	21	10733726	CAAAAAGAATATTTCCAAACTGCTTCATCA	CAAAGAGTATTTACAAACTGCTCAATCA	261	PASS	-	-	-	-	-	Complex	-	DI	10733727	10733755	29	18	0	-	-	0	1	1	-	-	./.	0	0	0	0	45	35	45	37	0	0	./.	8	1	0	0	111	83	111	96	8	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714924631	21	19192347	G	GT	660	PASS	C21orf91	CCDS42907.1	r.?	-	-	Ins	upstream	I	19192347	19192356	1	40	592.34	-	-	8	1	1	C21orf91|CCDS42907.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CHODL|ENST00000427223|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	7	9	9	21	26	21	26	9	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714926134	21	22832544	AT	A	600	PASS	NCAM2	CCDS42910.1	r.?	-	-	Del	intronic	D	22832544	22832548	1	35	543.909	-	-	3	1	1	NCAM2|CCDS42910.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCAM2|CCDS42910.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	6	4	8	8	23	17	23	17	8	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714936447	22	17763889	GT	G	749	PASS	-	-	-	-	-	Del	-	D	17763889	17763898	1	56	709.704	-	-	8	1	-	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	7	6	10	6	18	20	18	20	10	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714946515	22	48613203	CT	C	360	PASS	-	-	-	-	-	Del	-	D	48613203	48613208	1	12	327.834	-	-	4	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	1	5	1	8	9	24	9	24	1	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714951260	3	10167774	C	CA	569	PASS	-	-	-	-	-	Ins	-	I	10167774	10167782	1	32	531.531	-	-	7	1	1	-	-	./.	0	0	0	0	8	12	8	13	0	0	./.	3	7	8	11	18	30	19	30	8	11	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714954971	3	21483631	GA	G	420	PASS	ZNF385D	CCDS2636.1	r.?	-	-	Del	intronic	D	21483631	21483635	1	18	377.55	-	-	3	1	1	ZNF385D|CCDS2636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF385D|CCDS2636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	5	2	6	2	32	29	32	29	6	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714956872	3	27484983	G	GT	300	PASS	SLC4A7	CCDS33721.1	r.?	-	-	Ins	intronic	I	27484983	27484993	1	10	266.668	-	-	9	1	1	SLC4A7|CCDS33721.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC4A7|CCDS33721.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	4	15	4	0	0	./.	4	1	4	1	29	23	29	23	4	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714958383	3	32150236	AT	A	900	PASS	GPD1L	CCDS33729.1	r.?	-	-	Del	intronic	D	32150236	32150242	1	70	806.628	-	-	5	1	1	GPD1L|CCDS33729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPD1L|CCDS33729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	9	6	12	8	22	27	22	27	12	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714963665	3	49763221	C	CT	840	PASS	IP6K1	CCDS33760.1	r.2961_2962insa	c.?	p.?	Ins	3'UTR variant	I	49763221	49763223	1	63	744.865	-	-	1	1	1	IP6K1|CCDS33760.1|r.2961_2962insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	IP6K1|CCDS33760.1|r.2961_2962insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	11	13	12	0	0	./.	6	8	12	10	15	14	15	14	12	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714967018	3	62036252	AG	A	1080	PASS	PTPRG	CCDS2895.1	r.?	-	-	Del	intronic	D	62036252	62036255	1	96	970.241	-	-	2	1	1	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRG|CCDS2895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	7	11	9	17	11	18	11	18	9	17	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714968467	3	67691325	GT	G	360	PASS	SUCLG2	CCDS43104.1	r.?	-	-	Del	intronic	D	67691325	67691331	1	15	323.614	-	-	5	1	1	SUCLG2|CCDS43104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUCLG2|CCDS43104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	2	4	5	8	18	19	18	19	5	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714977926	3	105919284	CATA	C	300	PASS	-	-	-	-	-	Del	-	D	105919284	105919292	3	10	269.679	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	1	4	1	4	22	20	22	20	1	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714980056	3	113484773	C	CA	300	PASS	ATP6V1A	CCDS2976.1	r.?	-	-	Ins	intronic	I	113484773	113484783	1	12	261.852	-	-	9	1	1	ATP6V1A|CCDS2976.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATP6V1A|CCDS2976.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	3	2	32	30	32	30	3	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714980774	3	115966678	TC	T	300	PASS	LSAMP	CCDS2982.1	r.?	-	-	Del	intronic	D	115966678	115966680	1	12	269.679	-	-	1	1	1	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	3	17	12	17	12	3	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714986081	3	137554325	TA	T	1020	PASS	-	-	-	-	-	Del	-	D	137554325	137554334	1	84	915.101	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	6	11	8	14	16	17	16	17	8	14	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714988882	3	148556025	ACT	A	360	PASS	CPB1	CCDS33874.1	r.?	-	-	Del	intronic	D	148556025	148556030	2	15	323.614	-	-	2	1	1	CPB1|CCDS33874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPB1|CCDS33874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	4	2	14	16	14	16	4	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714989574	3	151115890	G	GT	960	PASS	MED12L	CCDS33876.1	r.?	-	-	Ins	intronic	I	151115890	151115892	1	80	853.339	-	-	1	1	1	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	3	9	3	0	0	./.	7	9	8	10	12	18	12	21	8	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2714996270	3	178406611	AG	A	360	PASS	KCNMB2	CCDS3223.1	r.?	-	-	Del	intronic	D	178406611	178406613	1	15	323.614	-	-	1	1	1	KCNMB2|CCDS3223.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KCNMB2|CCDS3223.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	6	3	16	23	16	23	6	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715003892	4	6055360	TA	T	300	PASS	JAKMIP1	CCDS47005.1	r.?	-	-	Del	intronic	D	6055360	6055366	1	10	269.683	-	-	5	1	1	JAKMIP1|CCDS47005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JAKMIP1|CCDS47005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	1	5	2	33	22	33	22	5	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715005856	4	11929583	AC	A	749	PASS	-	-	-	-	-	Del	-	D	11929583	11929586	1	56	701.175	-	-	2	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	7	6	11	7	24	22	24	22	11	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715006984	4	15697136	CG	C	300	PASS	-	-	-	-	-	Del	-	D	15697136	15697142	1	12	269.683	-	-	5	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	2	3	5	3	15	25	15	25	5	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715011338	4	28945142	ATC	A	449	PASS	-	-	-	-	-	Del	-	D	28945142	28945150	2	24	429.084	-	-	3	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	3	6	6	25	34	25	34	6	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715012298	4	32103494	TA	T	300	PASS	-	-	-	-	-	Del	-	D	32103494	32103502	1	12	269.683	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	6	5	22	18	22	18	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715012512	4	32579461	TTTAA	T	329	PASS	-	-	-	-	-	Del	-	D	32579461	32579473	4	12	323.619	-	-	2	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	1	5	1	5	10	15	10	15	1	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715020374	4	57883426	C	CT	300	PASS	POLR2B	CCDS3511.1	r.?	-	-	Ins	intronic	I	57883426	57883429	1	10	266.672	-	-	2	1	1	POLR2B|CCDS3511.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POLR2B|CCDS3511.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	3	10	3	0	0	./.	4	1	5	2	15	12	15	12	5	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715020378	4	57894672	CTATT	C	420	PASS	POLR2B	CCDS3511.1	r.?	-	-	Del	intronic	D	57894672	57894682	4	20	375.75	-	-	2	1	1	POLR2B|CCDS3511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLR2B|CCDS3511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	3	4	3	4	18	27	18	27	3	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715022446	4	64328615	GATAA	G	507	PASS	-	-	-	-	-	Del	-	D	64328615	64328630	4	35	535.753	-	-	3	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	6	4	6	4	18	21	18	21	6	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715027457	4	80879149	TG	T	480	PASS	ANTXR2	CCDS47085.1	r.?	-	-	Del	intronic	D	80879149	80879151	1	24	431.492	-	-	1	1	1	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANTXR2|CCDS47085.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	5	3	7	7	18	21	18	21	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715031652	4	96024398	ACTT	A	569	PASS	BMPR1B	CCDS3642.1	r.?	-	-	Del	upstream	D	96024398	96024404	3	20	539.365	-	-	1	1	1	BMPR1B|CCDS3642.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	BMPR1B|CCDS3642.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	9	1	9	5	23	23	23	23	9	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715036586	4	116184918	G	GT	720	PASS	-	-	-	-	-	Ins	-	I	116184918	116184927	1	49	640.014	-	-	8	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	6	6	11	8	17	22	17	22	11	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715041306	4	132958364	TC	T	360	PASS	-	-	-	-	-	Del	-	D	132958364	132958366	1	15	323.619	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	3	5	14	15	14	15	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715043780	4	141630570	TG	T	389	PASS	TBC1D9	CCDS47136.1	r.?	-	-	Del	intronic	D	141630570	141630572	1	8	375.75	-	-	1	1	1	TBC1D9|CCDS47136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D9|CCDS47136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	7	0	7	2	21	9	21	9	7	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715044207	4	143394508	TTAATG	T	418	PASS	INPP4B	CCDS47112.1	r.?	-	-	Del	intronic	D	143394508	143394516	5	21	431.492	-	-	1	1	1	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	INPP4B|ENST00000508116|r.56_60delCAUUA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	6	11	6	11	0	0	./.	2	6	3	6	15	27	15	27	3	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715044838	4	145765774	AC	A	960	PASS	-	-	-	-	-	Del	-	D	145765774	145765778	1	77	862.985	-	-	3	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	6	10	10	11	17	20	17	20	10	11	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715045298	4	148007619	GTCTCTACCAT	G	551	PASS	-	-	-	-	-	Del	-	D	148007619	148007631	10	110	1024.79	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	10	9	13	9	23	25	23	26	13	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715054773	4	178485856	G	GGT	300	PASS	-	-	-	-	-	Ins	-	I	178485856	178485875	2	12	263.662	-	-	9	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	4	3	13	25	13	25	4	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715056412	4	182771804	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	182771804	182771812	1	12	266.672	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	2	4	16	20	16	20	2	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715066741	5	18960457	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	18960457	18960477	2	12	269.832	-	-	9	1	-	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	2	3	2	3	25	38	25	38	2	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715067433	5	20897719	CT	C	749	PASS	-	-	-	-	-	Del	-	D	20897719	20897728	1	54	701.562	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	8	5	10	5	22	17	22	17	10	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715068811	5	24965788	GT	G	780	PASS	-	-	-	-	-	Del	-	D	24965788	24965796	1	54	699.756	-	-	7	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	5	8	7	11	18	25	18	25	7	11	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715069762	5	27918648	GT	G	360	PASS	-	-	-	-	-	Del	-	D	27918648	27918658	1	15	323.798	-	-	9	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	4	2	6	4	28	25	28	25	6	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715072608	5	36026247	TAG	T	300	PASS	-	-	-	-	-	Del	-	D	36026247	36026267	2	12	269.832	-	-	9	1	-	-	-	./.	0	0	0	0	14	3	14	3	0	0	./.	3	2	3	2	19	22	19	22	3	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715072784	5	36541946	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	36541946	36541953	1	12	320.186	-	-	6	1	-	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	1	8	4	22	13	22	13	8	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715074151	5	40793252	T	TA	509	PASS	PRKAA1	CCDS3932.2	r.?	-	-	Ins	intronic	I	40793252	40793254	1	30	480.278	-	-	1	1	1	PRKAA1|CCDS3932.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKAA1|CCDS3932.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	5	4	9	7	24	26	24	26	9	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715076343	5	52887303	GT	G	300	PASS	NDUFS4	CCDS3960.1	r.?	-	-	Del	intronic	D	52887303	52887305	1	6	268.627	-	-	1	1	1	NDUFS4|CCDS3960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDUFS4|CCDS3960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	5	0	6	0	24	13	24	13	6	0	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715076778	5	53979107	AG	A	480	PASS	-	-	-	-	-	Del	-	D	53979107	53979109	1	24	431.731	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	3	9	6	31	34	31	34	9	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715078943	5	60788781	TC	T	420	PASS	ZSWIM6	CCDS47215.1	r.?	-	-	Del	intronic	D	60788781	60788783	1	18	363.315	-	-	1	1	1	ZSWIM6|CCDS47215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZSWIM6|CCDS47215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	5	2	11	3	32	22	32	22	11	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715079016	5	61176151	AT	A	540	PASS	-	-	-	-	-	Del	-	D	61176151	61176160	1	30	485.697	-	-	8	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	5	4	8	6	25	19	25	19	8	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715081059	5	67586820	TTGAC	T	720	PASS	PIK3R1	CCDS3993.1	r.?	-	-	Del	intronic	D	67586820	67586827	4	48	647.596	-	-	1	1	1	PIK3R1|CCDS3993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3R1|CCDS3993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	3	8	3	0	0	./.	5	7	6	10	21	24	21	24	6	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715081447	5	68658572	TCAAA	T	960	PASS	TAF9	CCDS4001.1	r.?	-	-	Del	intronic	D	68658572	68658589	4	80	861.655	-	-	4	1	1	TAF9|CCDS4001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAF9|CCDS4001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	7	9	8	10	19	22	19	22	8	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715083956	5	77795142	ACT	A	360	PASS	LHFPL2	CCDS4042.1	r.?	-	-	Del	intronic	D	77795142	77795147	2	15	323.798	-	-	2	1	1	LHFPL2|CCDS4042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFPL2|CCDS4042.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	2	7	11	22	11	22	2	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715087398	5	88406419	AG	A	300	PASS	-	-	-	-	-	Del	-	D	88406419	88406421	1	6	259.597	-	-	1	1	-	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	5	0	6	0	28	21	28	21	6	0	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715088275	5	92146381	C	CT	509	PASS	-	-	-	-	-	Ins	-	I	92146381	92146391	1	24	480.278	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	7	2	7	5	25	32	26	33	7	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715088867	5	94736529	AGGTTGAAGTTAGCTTGTGACAGA	ATAGAACTT	348	PASS	FAM81B	CCDS43341.1	r.?	-	-	Complex	intronic	DI	94736530	94736552	23	48	0	-	-	0	1	1	FAM81B|CCDS43341.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	FAM81B|CCDS43341.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	7	5	0	0	17	11	17	11	7	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715099143	5	129557154	TG	T	660	PASS	-	-	-	-	-	Del	-	D	129557154	129557160	1	42	589.415	-	-	5	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	5	6	7	7	19	37	19	37	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715108220	5	161386751	CA	C	600	PASS	-	-	-	-	-	Del	-	D	161386751	161386753	1	27	539.663	-	-	1	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	8	2	13	7	28	17	28	17	13	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715108944	5	163304811	GA	G	360	PASS	-	-	-	-	-	Del	-	D	163304811	163304815	1	15	323.798	-	-	3	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	4	3	6	22	20	22	20	3	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715111196	5	170725488	GT	G	420	PASS	RANBP17	CCDS34287.1	r.?	-	-	Del	intronic	D	170725488	170725495	1	18	376.56	-	-	6	1	1	RANBP17|CCDS34287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP17|CCDS34287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	5	2	7	2	17	18	17	18	7	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715112132	5	173380743	TC	T	300	PASS	CPEB4	CCDS4390.1	r.?	-	-	Del	intronic	D	173380743	173380745	1	6	267.423	-	-	1	1	1	CPEB4|CCDS4390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPEB4|CCDS4390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	5	0	5	1	35	24	35	24	5	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715120284	6	16309211	AC	A	420	PASS	ATXN1	CCDS34342.1	r.?	-	-	Del	intronic	D	16309211	16309213	1	14	377.721	-	-	1	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	1	6	1	6	6	18	6	18	1	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715122453	6	22577750	AT	A	780	PASS	-	-	-	-	-	Del	-	D	22577750	22577760	1	56	701.481	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	6	7	8	9	17	16	17	16	8	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715127708	6	35842970	AC	A	389	PASS	SRPK1	CCDS47415.1	r.?	-	-	Del	intronic	D	35842970	35842973	1	14	377.721	-	-	2	1	1	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	1	6	1	6	19	21	19	21	1	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715127709	6	35848045	T	TAG	420	PASS	SRPK1	CCDS47415.1	r.?	-	-	Ins	intronic	I	35848045	35848048	2	14	369.292	-	-	1	1	1	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	1	6	3	9	9	17	9	17	3	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715128405	6	38122854	C	CT	600	PASS	ZFAND3	CCDS4836.1	r.?	-	-	Ins	downstream	I	38122854	38122858	1	36	532.978	-	-	3	1	1	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	5	15	5	15	0	0	./.	5	5	6	6	17	15	17	15	6	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715138048	6	69108267	GAC	G	600	PASS	-	-	-	-	-	Del	-	D	69108267	69108271	2	35	539.601	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	4	10	6	23	23	23	23	10	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715143207	6	87425737	TTAAC	T	658	PASS	-	-	-	-	-	Del	-	D	87425737	87425747	4	40	647.521	-	-	2	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	9	3	10	3	20	13	20	13	10	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715145829	6	95853336	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	95853336	95853346	1	10	266.79	-	-	9	1	1	-	-	./.	0	0	0	0	4	14	4	14	0	0	./.	1	4	2	5	17	20	17	20	2	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715146422	6	97724966	TC	T	300	PASS	C6orf167	CCDS5039.1	r.?	-	-	Del	intronic	D	97724966	97724971	1	10	269.8	-	-	4	1	1	C6orf167|CCDS5039.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf167|CCDS5039.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	1	4	3	5	21	19	21	19	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715146549	6	98204521	GT	G	540	PASS	-	-	-	-	-	Del	-	D	98204521	98204531	1	30	485.641	-	-	9	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	5	5	6	29	30	29	30	5	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715148152	6	103795997	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	103795997	103796006	1	10	266.188	-	-	8	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	1	4	1	31	23	31	23	4	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715149030	6	106845449	GCTC	G	360	PASS	-	-	-	-	-	Del	-	D	106845449	106845456	3	12	323.76	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	1	5	2	26	22	26	22	5	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715154847	6	124207872	AG	A	420	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124207872	124207874	1	20	377.721	-	-	1	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	3	4	4	5	24	23	24	23	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715155615	6	127319126	CT	C	360	PASS	-	-	-	-	-	Del	-	D	127319126	127319130	1	15	323.76	-	-	3	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	2	4	3	6	20	22	20	22	3	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715157352	6	133471333	GGAT	G	569	PASS	-	-	-	-	-	Del	-	D	133471333	133471337	3	35	538.397	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	6	4	9	7	17	19	17	19	9	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715158038	6	135514224	C	CT	540	PASS	MYB	CCDS47481.1	r.?	-	-	Ins	intronic	I	135514224	135514226	1	28	480.222	-	-	1	1	1	MYB|CCDS47481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYB|CCDS47481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	14	9	0	0	./.	6	3	8	7	16	19	17	20	8	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715160796	6	146314000	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	146314000	146314010	1	30	477.814	-	-	9	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	5	7	7	22	26	22	26	7	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715162550	6	151792626	TTGTA	T	567	PASS	C6orf211	CCDS5233.1	r.?	-	-	Del	downstream	D	151792626	151792634	4	42	591.755	-	-	1	1	1	C6orf211|CCDS5233.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C6orf211|CCDS5233.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	14	15	14	0	0	./.	5	6	7	7	35	28	35	28	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715162704	6	152217798	A	AT	300	PASS	ESR1	CCDS5234.1	r.?	-	-	Ins	intronic	I	152217798	152217808	1	12	266.79	-	-	9	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	6	3	29	38	29	39	6	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715164332	6	157063024	TGTAA	T	586	PASS	-	-	-	-	-	Del	-	D	157063024	157063031	4	42	593.561	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	6	7	7	24	15	24	15	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715166994	6	164564020	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	164564020	164564024	1	35	532.978	-	-	3	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	6	4	6	5	31	24	32	26	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715167138	6	165090294	T	TA	509	PASS	ENSG00000237744	ENST00000425920	r.?	-	-	Ins	intronic	I	165090294	165090302	1	30	479.62	-	-	7	1	1	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	4	5	5	7	26	29	26	29	5	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715168321	6	168484588	TTTAC	T	449	PASS	FRMD1	CCDS5306.1	r.?	-	-	Del	upstream	D	168484588	168484595	4	24	431.681	-	-	1	1	1	FRMD1|CCDS5306.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FRMD1|CCDS5306.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	8	10	8	0	0	./.	5	3	4	4	15	21	16	21	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715169582	7	1619843	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	1619843	1619855	2	15	323.75	-	-	5	1	-	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	4	0	1	28	38	28	38	2	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715170167	7	3128015	TG	T	269	PASS	-	-	-	-	-	Del	-	D	3128015	3128020	1	12	266.781	-	-	4	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	2	3	23	17	23	17	2	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715173496	7	12039380	CT	C	300	PASS	-	-	-	-	-	Del	-	D	12039380	12039390	1	6	269.792	-	-	9	1	1	-	-	./.	0	0	0	0	15	2	15	2	0	0	./.	5	0	6	0	24	15	24	15	6	0	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715174545	7	15048349	TG	T	540	PASS	-	-	-	-	-	Del	-	D	15048349	15048351	1	10	485.625	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	0	9	1	10	11	20	11	20	1	10	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715180871	7	34193502	G	GAA	600	PASS	BMPER	CCDS5442.1	r.3049_3050insaa	c.?	p.?	Ins	3'UTR variant	I	34193502	34193506	2	36	526.94	-	-	3	1	1	BMPER|CCDS5442.1|r.3049_3050insaa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	BMPER|CCDS5442.1|r.3049_3050insaa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	19	8	19	9	0	0	./.	5	5	6	7	15	18	16	18	6	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715181881	7	37703423	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	37703423	37703440	2	12	248.117	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	4	4	19	18	19	18	4	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715202428	7	99547315	TATGA	T	794	PASS	-	-	-	-	-	Del	-	D	99547315	99547323	4	63	755.416	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	8	6	8	7	22	22	23	22	9	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715203893	7	102988811	C	CT	629	PASS	PSMC2	CCDS5731.1	r.?	-	-	Ins	intronic	I	102988811	102988820	1	42	583.306	-	-	8	1	1	PSMC2|CCDS5731.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PSMC2|CCDS5731.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	5	6	7	8	21	26	21	26	7	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715206078	7	109692049	TTA	T	780	PASS	-	-	-	-	-	Del	-	D	109692049	109692057	2	54	701.458	-	-	3	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	8	5	10	6	27	23	27	23	10	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715210778	7	127030831	GTTCTAAGTAGAAC	G	261	PASS	ZNF800	CCDS5795.1	r.?	-	-	Del	intronic	D	127030831	127030846	13	28	485.625	-	-	1	1	1	ZNF800|CCDS5795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF800|CCDS5795.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	6	3	9	2	25	15	25	16	9	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715211686	7	129189194	AT	A	269	PASS	-	-	-	-	-	Del	-	D	129189194	129189203	1	10	269.189	-	-	8	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	1	4	3	21	27	21	27	4	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715216311	7	141900528	TC	T	900	PASS	ENSG00000204987	ENST00000477922	r.?	-	-	Del	intronic	D	141900528	141900531	1	52	808.773	-	-	2	1	1	ENSG00000204987|ENST00000477922|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000204987|ENST00000477922|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	12	6	13	26	30	26	30	6	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715216688	7	143545860	TTATA	T	480	PASS	FAM115A	CCDS5886.1	r.?	-	-	Del	downstream	D	143545860	143545869	4	25	431.666	-	-	4	1	1	FAM115A|CCDS5886.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000170389|ENST00000307248|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	19	15	19	0	0	./.	4	4	5	8	38	47	38	47	5	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715220251	7	153152572	CT	C	600	PASS	-	-	-	-	-	Del	-	D	153152572	153152581	1	27	539.583	-	-	8	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	8	2	8	3	22	12	22	12	8	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715223402	8	4094936	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	4094936	4094943	1	18	373.976	-	-	6	1	1	-	-	./.	0	0	0	0	10	17	10	19	0	0	./.	2	5	3	9	12	16	12	16	3	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715223463	8	4315821	CT	C	300	PASS	-	-	-	-	-	Del	-	D	4315821	4315831	1	12	270.136	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	5	2	8	10	8	10	5	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715223741	8	5339887	AG	A	480	PASS	-	-	-	-	-	Del	-	D	5339887	5339890	1	21	431.615	-	-	2	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	2	6	2	9	8	23	8	23	2	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715224516	8	8806598	C	CATTT	300	PASS	-	-	-	-	-	Ins	-	I	8806598	8806627	4	6	258.095	-	-	7	1	-	-	-	./.	0	0	0	0	15	14	16	14	0	0	./.	0	5	0	5	17	15	17	15	0	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715230492	8	31455481	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	31455481	31455482	1	10	262.309	-	-	0	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	4	5	14	17	14	17	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715230505	8	31483935	TG	T	300	PASS	-	-	-	-	-	Del	-	D	31483935	31483939	1	10	270.136	-	-	3	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	1	4	14	13	14	13	1	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715230842	8	32712625	CT	C	569	PASS	-	-	-	-	-	Del	-	D	32712625	32712635	1	32	539.669	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	7	4	7	10	18	10	18	4	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715233261	8	40922257	AT	A	838	PASS	-	-	-	-	-	Del	-	D	40922257	40922261	1	72	810.407	-	-	3	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	8	7	13	9	35	23	35	23	13	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715234068	8	43509438	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	43509438	43509443	1	24	427.401	-	-	4	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	5	3	6	6	11	14	11	14	6	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715234685	8	49010134	AGAG	A	538	PASS	-	-	-	-	-	Del	-	D	49010134	49010141	3	35	540.271	-	-	2	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	4	6	6	7	18	22	18	22	6	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715238199	8	61370709	AGG	A	540	PASS	-	-	-	-	-	Del	-	D	61370709	61370712	2	28	483.836	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	6	3	6	3	14	13	14	13	6	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715238558	8	62576537	GTAAA	G	269	PASS	ASPH	CCDS34898.1	r.?	-	-	Del	intronic	D	62576537	62576548	4	10	263.513	-	-	2	1	1	ASPH|CCDS34898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASPH|CCDS34898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	4	1	7	3	26	20	26	20	7	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715239057	8	64055366	TGAAGAAA	T	268	PASS	-	-	-	-	-	Del	-	D	64055366	64055375	7	30	594.299	-	-	1	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	9	2	9	1	30	15	30	16	9	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715239159	8	64424370	CT	C	420	PASS	-	-	-	-	-	Del	-	D	64424370	64424380	1	20	377.588	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	3	7	3	15	19	15	19	7	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715239491	8	65919042	TTG	T	609	PASS	-	-	-	-	-	Del	-	D	65919042	65919046	2	40	590.084	-	-	1	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	4	7	6	9	16	18	16	18	6	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715239788	8	66688909	A	AT	600	PASS	PDE7A	CCDS34901.1	r.?	-	-	Ins	intronic	I	66688909	66688911	1	36	534.251	-	-	1	1	1	PDE7A|CCDS34901.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE7A|CCDS34901.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	5	5	7	9	22	25	22	25	7	9	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715240419	8	68966630	C	CAA	269	PASS	PREX2	CCDS6201.1	r.?	-	-	Ins	intronic	I	68966630	68966631	2	12	262.309	-	-	0	1	1	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	3	2	0	0	23	28	23	28	3	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715241932	8	74295034	CA	C	360	PASS	-	-	-	-	-	Del	-	D	74295034	74295038	1	15	324.163	-	-	3	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	3	4	17	16	17	16	3	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715242371	8	75526872	TTTC	T	718	PASS	-	-	-	-	-	Del	-	D	75526872	75526878	3	56	702.353	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	7	7	7	27	34	27	34	7	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715248090	8	94686640	A	AGT	660	PASS	AC011118.2	ENST00000501400	r.?	-	-	Ins	intronic	I	94686640	94686647	2	42	578.645	-	-	3	1	1	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC011118.2|ENST00000501400|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	6	5	7	11	28	52	29	53	7	11	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715252156	8	104846565	T	TC	300	PASS	RIMS2	ENST00000507740	r.?	-	-	Ins	intronic	I	104846565	104846566	1	10	265.921	-	-	0	1	-	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	1	4	5	5	23	26	23	26	5	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715252731	8	106510437	A	AT	360	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Ins	intronic	I	106510437	106510438	1	12	320.551	-	-	0	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	5	1	7	4	33	27	33	27	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715254347	8	110911409	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	110911409	110911425	2	12	270.136	-	-	7	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	2	4	2	26	55	26	55	4	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715261327	8	130905783	T	TA	300	PASS	FAM49B	CCDS6361.1	r.?	-	-	Ins	intronic	I	130905783	130905793	1	12	267.125	-	-	9	1	1	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	9	27	9	0	0	./.	2	3	3	3	43	27	44	27	3	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715262534	8	134727747	CCCCT	C	1037	PASS	-	-	-	-	-	Del	-	D	134727747	134727753	4	168	1264.14	-	-	1	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	13	11	0	2	32	28	33	28	13	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715263181	8	136878033	GGAATCTTTTTGTGT	G	290	PASS	-	-	-	-	-	Del	-	D	136878033	136878051	14	27	540.272	-	-	1	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	8	2	6	2	23	23	25	23	8	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715263374	8	137498557	TA	T	720	PASS	-	-	-	-	-	Del	-	D	137498557	137498559	1	49	648.326	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	6	9	7	29	20	29	20	9	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715263829	8	138652490	CTGTT	C	600	PASS	-	-	-	-	-	Del	-	D	138652490	138652500	4	35	540.271	-	-	2	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	4	6	5	34	30	34	30	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715273283	9	20661894	C	CA	900	PASS	KIAA1797	CCDS34993.1	r.?	-	-	Ins	intronic	I	20661894	20661901	1	70	802.03	-	-	6	1	1	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	9	6	13	13	31	30	31	30	13	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715275518	9	28928722	CT	C	420	PASS	-	-	-	-	-	Del	-	D	28928722	28928731	1	18	378.776	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	2	6	5	27	20	27	20	6	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715275591	9	29231486	CT	C	360	PASS	-	-	-	-	-	Del	-	D	29231486	29231495	1	12	322.257	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	1	5	3	6	16	20	16	20	3	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715286081	9	80665048	ATAC	A	267	PASS	-	-	-	-	-	Del	-	D	80665048	80665054	3	12	324.063	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	3	5	9	12	9	12	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715287481	9	85292559	AT	A	900	PASS	-	-	-	-	-	Del	-	D	85292559	85292562	1	72	811.663	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	8	11	13	24	25	24	25	11	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715287549	9	85603369	C	CT	480	PASS	RASEF	CCDS6662.1	r.?	-	-	Ins	intronic	I	85603369	85603379	1	25	427.468	-	-	9	1	1	RASEF|CCDS6662.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RASEF|CCDS6662.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	4	5	4	16	19	16	19	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715288492	9	88192540	TA	T	960	PASS	AGTPBP1	CCDS6672.1	r.?	-	-	Del	intronic	D	88192540	88192545	1	77	865.773	-	-	4	1	1	AGTPBP1|CCDS6672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGTPBP1|CCDS6672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	10	9	12	22	20	22	20	9	12	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715290884	9	96342282	CGTT	C	300	PASS	PHF2	CCDS35069.1	r.?	-	-	Del	intronic	D	96342282	96342288	3	12	268.146	-	-	1	1	1	PHF2|CCDS35069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHF2|CCDS35069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	3	2	4	2	21	32	21	32	4	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715291525	9	98281428	AAACT	A	776	PASS	PTCH1	CCDS47996.1	r.?	-	-	Del	upstream	D	98281428	98281437	4	30	811.663	-	-	2	1	1	PTCH1|CCDS47996.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PTCH1|CCDS47996.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	4	8	4	0	0	./.	14	1	14	2	30	10	31	10	15	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715297266	9	116380302	TTGA	T	418	PASS	-	-	-	-	-	Del	-	D	116380302	116380310	3	25	432.887	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	4	4	5	16	20	16	20	4	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715299834	9	124609142	CT	C	600	PASS	TTLL11	CCDS48012.1	r.?	-	-	Del	intronic	D	124609142	124609144	1	32	541.108	-	-	1	1	1	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	7	8	16	29	29	29	29	8	16	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715307600	X	8856882	TG	T	420	PASS	-	-	-	-	-	Del	-	D	8856882	8856886	1	18	378.666	-	-	3	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	2	5	2	5	27	24	27	24	2	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715308189	X	11835412	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	11835412	11835420	1	30	481.438	-	-	7	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	5	5	7	23	24	23	24	5	7	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715309779	X	17892307	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	17892307	17892315	1	10	260.241	-	-	7	1	-	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	4	1	32	33	32	33	4	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715311688	X	26276547	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	26276547	26276557	1	12	265.659	-	-	9	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	2	3	2	30	30	30	30	3	2	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715313054	X	31367555	G	GT	449	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	31367555	31367557	1	24	426.139	-	-	1	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	9	0	0	./.	5	3	12	5	23	14	23	15	12	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715314376	X	36986668	AG	A	480	PASS	-	-	-	-	-	Del	-	D	36986668	36986674	1	24	432.159	-	-	5	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	5	3	7	4	22	25	22	25	7	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715315707	X	43044699	TATAA	T	358	PASS	-	-	-	-	-	Del	-	D	43044699	43044707	4	20	378.666	-	-	1	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	4	2	5	11	12	12	12	3	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715315722	X	43147579	TGAA	T	838	PASS	-	-	-	-	-	Del	-	D	43147579	43147583	3	60	810.825	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	11	5	12	19	22	19	23	5	13	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715319809	X	65499687	GA	G	360	PASS	-	-	-	-	-	Del	-	D	65499687	65499693	1	12	324.571	-	-	5	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	1	7	1	21	21	21	21	7	1	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715320422	X	68497544	CT	C	420	PASS	-	-	-	-	-	Del	-	D	68497544	68497546	1	14	378.064	-	-	1	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	1	6	2	8	10	20	10	20	2	8	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715322308	X	77174996	C	CT	480	PASS	ATP7A	CCDS35339.1	r.?	-	-	Ins	intronic	I	77174996	77175006	1	24	426.741	-	-	9	1	1	ATP7A|CCDS35339.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATP7A|CCDS35339.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	11	23	11	0	0	./.	5	3	7	6	26	29	26	29	7	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715326257	X	92987927	AT	A	269	PASS	-	-	-	-	-	Del	-	D	92987927	92987937	1	12	270.476	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	4	6	27	19	27	19	4	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715329172	X	105949616	G	GA	300	PASS	RNF128	CCDS14520.1	r.?	-	-	Ins	intronic	I	105949616	105949626	1	12	267.466	-	-	9	1	1	RNF128|CCDS14520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF128|CCDS14520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	3	12	3	0	0	./.	2	3	8	6	30	23	31	23	8	6	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715329466	X	107179118	A	AC	360	PASS	MID2	ENST00000427119	r.?	-	-	Ins	downstream	I	107179118	107179125	1	15	320.959	-	-	6	1	1	MID2|ENST00000427119|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MID2|ENST00000427119|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	6	4	27	16	27	16	6	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715329525	X	107532792	TA	T	360	PASS	COL4A6	CCDS14542.1	r.?	-	-	Del	intronic	D	107532792	107532802	1	15	324.571	-	-	9	1	-	COL4A6|CCDS14542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A6|CCDS14542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	4	2	5	4	31	23	31	23	5	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715336468	X	131247622	AT	A	420	PASS	FRMD7	CCDS35397.1	r.?	-	-	Del	intronic	D	131247622	131247625	1	20	378.666	-	-	2	1	1	FRMD7|CCDS35397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRMD7|CCDS35397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	4	3	4	35	24	35	24	3	4	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715338348	X	137790169	CA	C	360	PASS	FGF13	CCDS14665.1	r.?	-	-	Del	intronic	D	137790169	137790178	1	16	317.948	-	-	8	1	1	FGF13|CCDS14665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF13|CCDS14665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	6	3	36	23	36	23	6	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715338739	X	139105778	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	139105778	139105794	2	6	270.476	-	-	7	1	1	-	-	./.	0	0	0	0	1	13	1	13	0	0	./.	0	5	0	5	9	42	9	42	0	5	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715342082	X	150593171	G	GAGGAGGAGGAAGAGGAAGAAGAAGAGGAGA	269	PASS	-	-	-	-	-	Ins	-	I	150593171	150593182	30	12	177.157	-	-	0	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	0	0	33	28	33	30	2	3	1	1	1	1	1	1	1	1
2662648	PD18175a	PD18175b	2715342416	X	152051436	TC	T	1709	PASS	-	-	-	-	-	Del	-	D	152051436	152051440	1	238	1563.94	-	-	3	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	13	16	17	21	28	30	28	30	17	21	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721877493	1	1153978	A	ACT	277	PASS	SDF4	CCDS30553.1	r.1034_1035insag	c.771_772insAG	p.F258fs*23	Ins	frameshift	I	1153978	1153982	2	12	261.175	-	-	1	1	1	SDF4|CCDS30553.1|r.1034_1035insag|c.771_772insAG|p.F258fs*23|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	SDF4|CCDS30553.1|r.1034_1035insag|c.771_772insAG|p.F258fs*23|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	16	14	16	14	0	0	./.	3	2	5	3	15	17	15	18	5	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721897406	1	65114769	A	AT	629	PASS	CACHD1	CCDS628.2	r.?	-	-	Ins	intronic	I	65114769	65114778	1	36	583.255	-	-	8	1	1	CACHD1|CCDS628.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACHD1|CCDS628.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	22	16	22	0	0	./.	3	8	6	10	15	18	16	18	6	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721901240	1	78860889	A	AT	360	PASS	PTGFR	CCDS686.1	r.?	-	-	Ins	intronic	I	78860889	78860897	1	15	317.264	-	-	7	1	1	PTGFR|CCDS686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTGFR|CCDS686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	29	15	30	0	0	./.	2	4	2	6	13	20	14	20	2	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721911629	1	114006986	G	GT	540	PASS	MAGI3	CCDS860.1	r.?	-	-	Ins	intronic	I	114006986	114006988	1	28	477.702	-	-	1	1	1	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	19	9	20	0	0	./.	6	3	7	4	25	13	25	13	7	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721912810	1	118803456	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	118803456	118803462	1	30	475.293	-	-	5	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	5	4	5	7	16	12	16	12	5	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721919529	1	152927270	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	152927270	152927289	2	10	267.798	-	-	9	1	-	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	1	4	1	4	27	24	27	24	1	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721927385	1	171749672	GTA	G	269	PASS	METTL13	CCDS1299.1	r.?	-	-	Del	upstream	D	171749672	171749678	2	10	267.798	-	-	2	1	1	METTL13|CCDS1299.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	METTL13|CCDS1299.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	13	17	13	0	0	./.	1	4	1	7	30	39	30	39	1	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721927610	1	172349506	AGTCC	A	298	PASS	DNM3	CCDS44276.1	r.?	-	-	Del	intronic	D	172349506	172349513	4	15	322.08	-	-	1	1	1	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	20	24	20	0	0	./.	4	2	3	3	35	35	36	35	4	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721927879	1	173230989	C	CA	300	PASS	AL022310.2	ENST00000421168	r.?	-	-	Ins	intronic	I	173230989	173230999	1	12	265.39	-	-	9	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	15	26	17	0	0	./.	3	2	3	2	40	37	41	38	3	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721928745	1	175741358	AC	A	637	PASS	-	-	-	-	-	Del	-	D	175741358	175741360	1	42	585.062	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	6	5	11	9	27	25	27	25	11	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721932801	1	185883851	A	AT	1200	PASS	HMCN1	CCDS30956.1	r.?	-	-	Ins	intronic	I	185883851	185883861	1	112	1057.34	-	-	9	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	7	13	10	15	33	48	33	48	10	15	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721934874	1	191096055	C	CAAAT	840	PASS	-	-	-	-	-	Ins	-	I	191096055	191096083	4	63	717.203	-	-	6	1	-	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	8	6	12	27	35	28	35	6	12	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721935142	1	191933420	CTG	C	1117	PASS	-	-	-	-	-	Del	-	D	191933420	191933426	2	98	1015.71	-	-	2	1	1	-	-	./.	0	0	0	0	15	26	15	26	0	0	./.	6	13	9	22	20	30	20	30	9	22	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721937727	1	199208151	C	CT	1109	PASS	-	-	-	-	-	Ins	-	I	199208151	199208158	1	104	1008.48	-	-	6	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	7	12	8	16	22	36	22	36	8	16	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721938892	1	201596207	C	CT	1080	PASS	NAV1	ENST00000367302	r.?	-	-	Ins	intronic	I	201596207	201596215	1	96	949.984	-	-	7	1	1	NAV1|ENST00000367302|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NAV1|ENST00000367302|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	16	24	16	0	0	./.	7	11	9	15	28	33	28	34	9	15	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721940816	1	205423677	TGA	T	300	PASS	LEMD1	CCDS30986.1	r.?	-	-	Del	upstream	D	205423677	205423696	2	10	268.4	-	-	9	1	-	LEMD1|CCDS30986.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LEMD1|CCDS30986.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	11	11	11	0	0	./.	4	1	4	1	39	21	39	21	4	1	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721948124	1	224183860	AACAGA	AAAC	290	PASS	-	-	-	-	-	Complex	-	DI	224183861	224183865	5	14	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	6	1	0	0	51	34	51	34	6	1	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721950317	1	228771163	C	CG	646	PASS	RN5S1	ENST00000363040	r.?	-	-	Ins	upstream	I	228771163	228771170	1	23	1157.48	-	-	6	1	1	RN5S1|ENST00000363040|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	RN5S1|ENST00000363040|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	5	5	5	5	0	0	./.	22	0	27	0	43	14	45	15	28	0	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721962877	10	8111432	TCA	T	300	PASS	GATA3	CCDS31143.1	r.1493-3_1493-2delca	c.925-3_925-2delca	p.?	Del	ess splice	D	8111432	8111435	2	12	269.472	-	-	1	1	1	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	GATA3|CCDS31143.1|r.1493-3_1493-2delca|c.925-3_925-2delca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	27	15	27	15	0	0	./.	2	3	4	3	12	21	12	21	4	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721965195	10	13892285	A	AT	360	PASS	FRMD4A	CCDS7101.1	r.?	-	-	Ins	intronic	I	13892285	13892295	1	16	317.948	-	-	9	1	1	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FRMD4A|CCDS7101.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	22	29	22	0	0	./.	3	3	4	3	17	8	17	8	4	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721971125	10	30821384	GT	G	360	PASS	-	-	-	-	-	Del	-	D	30821384	30821386	1	7	323.366	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	0	6	5	8	13	15	13	15	5	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721982712	10	68302852	TTTTG	T	404	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	68302852	68302872	4	24	431.155	-	-	4	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	9	24	9	0	0	./.	3	5	5	7	12	19	12	19	5	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721991930	10	98564915	GC	G	300	PASS	-	-	-	-	-	Del	-	D	98564915	98564918	1	12	269.472	-	-	2	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	2	4	5	9	22	9	22	4	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2721996988	10	113658078	CCT	C	600	PASS	-	-	-	-	-	Del	-	D	113658078	113658081	2	35	535.331	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	4	6	4	12	10	20	10	20	4	12	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722003810	10	134917018	TC	T	300	PASS	GPR123	CCDS41580.1	r.?	-	-	Del	intronic	D	134917018	134917023	1	6	269.472	-	-	4	1	1	GPR123|CCDS41580.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR123|CCDS41580.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	0	5	2	5	11	16	11	16	2	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722006226	11	6140500	CA	C	807	PASS	-	-	-	-	-	Del	-	D	6140500	6140509	1	72	809.917	-	-	8	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	8	7	10	7	25	15	25	15	10	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722007623	11	9867957	TA	T	420	PASS	SBF2	CCDS31427.1	r.?	-	-	Del	intronic	D	9867957	9867960	1	18	376.155	-	-	2	1	1	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SBF2|CCDS31427.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	5	2	7	3	14	15	14	15	7	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722014348	11	30157284	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	30157284	30157293	1	40	577.081	-	-	8	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	4	7	7	12	23	28	23	28	7	12	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722014893	11	32169307	TCTACTGGTG	T	290	PASS	-	-	-	-	-	Del	-	D	32169307	32169319	9	35	539.945	-	-	1	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	4	6	4	6	16	16	16	17	4	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722017864	11	40735256	CCTT	C	420	PASS	-	-	-	-	-	Del	-	D	40735256	40735262	3	20	377.961	-	-	1	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	4	3	5	3	18	12	18	12	5	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722027589	11	71779206	TGAA	T	329	PASS	NUMA1	CCDS31633.1	r.?	-	-	Del	intronic	D	71779206	71779213	3	15	323.967	-	-	2	1	1	NUMA1|CCDS31633.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NUMA1|CCDS31633.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	4	2	4	3	23	24	23	24	4	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722033994	11	92404204	G	GT	840	PASS	FAT3	CCDS44706.1	r.?	-	-	Ins	intronic	I	92404204	92404211	1	60	742.677	-	-	6	1	1	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAT3|CCDS44706.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	9	5	13	6	27	26	27	26	13	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722036325	11	99699804	C	CA	420	PASS	CNTN5	ENST00000279463	r.?	-	-	Ins	intronic	I	99699804	99699813	1	20	371.941	-	-	8	1	1	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	16	20	0	0	./.	3	4	4	8	11	26	11	26	4	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722036791	11	101007291	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	101007291	101007301	1	12	259.737	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	2	3	29	26	29	26	2	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722039406	11	108758194	T	TA	720	PASS	DDX10	CCDS8342.1	r.?	-	-	Ins	intronic	I	108758194	108758204	1	49	634.086	-	-	9	1	1	DDX10|CCDS8342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DDX10|CCDS8342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	6	6	6	8	20	26	20	26	6	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722041859	11	116625885	TAAG	T	538	PASS	BUD13	CCDS8374.1	r.?	-	-	Del	intronic	D	116625885	116625889	3	32	539.945	-	-	1	1	1	BUD13|CCDS8374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BUD13|CCDS8374.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	7	3	8	3	27	22	27	22	8	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722044268	11	123394368	T	TC	269	PASS	GRAMD1B	ENST00000456860	r.?	-	-	Ins	upstream	I	123394368	123394369	1	12	266.962	-	-	0	1	1	GRAMD1B|ENST00000456860|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	GRAMD1B|ENST00000456860|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	13	12	14	0	0	./.	2	3	3	3	29	19	29	20	3	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722046305	11	129625418	TCAG	T	298	PASS	-	-	-	-	-	Del	-	D	129625418	129625422	3	15	323.967	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	2	4	4	13	15	14	15	5	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722047649	11	134838253	TA	T	420	PASS	-	-	-	-	-	Del	-	D	134838253	134838260	1	20	377.961	-	-	6	1	1	-	-	./.	0	0	0	0	14	25	14	25	0	0	./.	3	4	5	6	15	11	15	11	5	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722051327	12	10094078	CAAT	C	509	PASS	-	-	-	-	-	Del	-	D	10094078	10094084	3	28	484.551	-	-	1	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	6	3	9	7	18	17	18	17	9	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722067850	12	66233398	G	GT	540	PASS	HMGA2	CCDS44936.1	r.?	-	-	Ins	intronic	I	66233398	66233401	1	28	480.939	-	-	2	1	1	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	6	3	9	8	16	8	16	3	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722085981	12	125681673	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	125681673	125681680	1	20	372.859	-	-	6	1	1	-	-	./.	0	0	0	0	11	14	12	15	0	0	./.	4	3	10	4	27	18	28	18	10	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722106951	13	69638447	TATC	T	418	PASS	-	-	-	-	-	Del	-	D	69638447	69638453	3	25	433.022	-	-	1	1	1	-	-	./.	0	0	0	0	17	27	17	27	0	0	./.	4	4	4	5	8	14	9	14	5	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722108887	13	74944331	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	74944331	74944343	2	10	270.037	-	-	5	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	4	1	5	1	15	16	15	16	5	1	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722116056	13	96356123	TC	T	449	PASS	DNAJC3	CCDS9479.1	r.?	-	-	Del	intronic	D	96356123	96356126	1	16	424.594	-	-	2	1	1	DNAJC3|CCDS9479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC3|CCDS9479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	1	7	6	14	17	31	17	31	6	14	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722122048	13	113859578	AG	A	509	PASS	CUL4A	CCDS9533.1	r.?	-	-	Del	upstream	D	113859578	113859581	1	30	478.721	-	-	2	1	1	CUL4A|CCDS9533.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PCID2|CCDS9532.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	4	5	5	8	21	22	21	22	5	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722136158	14	59449735	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	59449735	59449742	1	48	641.743	-	-	6	1	1	-	-	./.	0	0	0	0	13	23	14	25	0	0	./.	7	5	10	6	17	20	17	20	10	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722164325	15	57846378	C	CT	329	PASS	CGNL1	CCDS10161.1	r.?	-	-	Ins	downstream	I	57846378	57846383	1	12	320.044	-	-	4	1	1	CGNL1|CCDS10161.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CGNL1|CCDS10161.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	18	20	18	20	0	0	./.	1	5	3	7	8	17	8	18	3	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722164844	15	59547930	GTTT	G	387	PASS	MYO1E	CCDS32254.1	r.?	-	-	Del	intronic	D	59547930	59547935	3	25	433.95	-	-	4	1	1	MYO1E|CCDS32254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO1E|CCDS32254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	4	4	4	7	10	10	10	10	4	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722178533	16	1458964	C	CTCCA	478	PASS	UNKL	CCDS32359.1	r.?	-	-	Ins	intronic	I	1458964	1458966	4	28	463.644	-	-	0	1	1	UNKL|CCDS32359.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UNKL|CCDS32359.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	7	21	7	0	0	./.	6	3	8	4	21	21	22	21	9	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722183094	16	10557696	T	TTA	1200	PASS	ATF7IP2	CCDS10540.1	r.?	-	-	Ins	intronic	I	10557696	10557701	2	117	1057.82	-	-	2	1	1	ATF7IP2|CCDS10540.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AC131649.1|ENST00000515579|r.1389_1390insua|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	./.	0	0	0	0	26	12	26	12	0	0	./.	8	12	11	17	21	30	21	30	11	17	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722187650	16	20923087	G	GT	540	PASS	LYRM1	CCDS10593.1	r.?	-	-	Ins	intronic	I	20923087	20923094	1	18	481.706	-	-	6	1	1	LYRM1|CCDS10593.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LYRM1|CCDS10593.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	12	25	12	0	0	./.	8	1	9	3	20	20	20	20	9	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722199172	16	62024030	TATG	T	600	PASS	CDH8	CCDS10802.1	r.?	-	-	Del	intronic	D	62024030	62024037	3	20	540.648	-	-	2	1	1	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH8|CCDS10802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	1	9	2	9	8	13	8	13	2	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722200037	16	65289867	AGATC	A	505	PASS	-	-	-	-	-	Del	-	D	65289867	65289872	4	40	594.773	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	7	4	8	6	13	11	13	11	8	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722203099	16	76199707	C	CCA	329	PASS	-	-	-	-	-	Ins	-	I	76199707	76199708	2	16	303.076	-	-	0	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	3	0	0	7	18	8	18	3	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722209363	17	5400409	CTG	C	600	PASS	ENSG00000091592	CCDS32537.1	r.?	-	-	Del	downstream	D	5400409	5400414	2	36	541.423	-	-	2	1	1	ENSG00000091592|CCDS32537.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000091592|CCDS32537.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	9	12	9	0	0	./.	5	5	9	6	16	25	16	25	9	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722212926	17	14061264	TG	T	840	PASS	COX10	CCDS11166.1	r.?	-	-	Del	intronic	D	14061264	14061269	1	64	756.788	-	-	4	1	1	COX10|CCDS11166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COX10|CCDS11166.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	7	7	7	8	21	17	21	17	7	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722233545	17	71415858	C	CA	540	PASS	SDK2	CCDS45769.1	r.?	-	-	Ins	intronic	I	71415858	71415867	1	30	481.862	-	-	8	1	1	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	5	5	8	20	26	21	26	5	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722246837	18	28361027	TATA	T	720	PASS	-	-	-	-	-	Del	-	D	28361027	28361037	3	40	650.52	-	-	3	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	9	3	11	7	23	15	23	15	11	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722249346	18	37213781	C	CT	360	PASS	AC105201.1	ENST00000510201	r.?	-	-	Ins	intronic	I	37213781	37213786	1	15	319.239	-	-	4	1	1	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	2	4	2	4	21	21	21	21	2	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722256185	18	58214019	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	58214019	58214029	1	48	638.479	-	-	9	1	1	-	-	./.	0	0	0	0	27	20	27	20	0	0	./.	7	5	8	5	16	16	16	16	8	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722262220	18	75449931	AC	A	480	PASS	-	-	-	-	-	Del	-	D	75449931	75449936	1	25	431.874	-	-	4	1	1	-	-	./.	0	0	0	0	23	7	23	7	0	0	./.	4	4	6	3	18	23	18	23	6	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722276630	19	32662018	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	32662018	32662026	1	28	482.389	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	6	3	6	5	13	15	13	15	6	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722278412	19	36829747	TAC	T	480	PASS	ZFP14	CCDS33002.1	r.3072_3073delGU	c.?	p.?	Del	3'UTR variant	D	36829747	36829757	2	25	433.607	-	-	4	1	1	ZFP14|CCDS33002.1|r.3072_3073delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ZFP14|CCDS33002.1|r.3072_3073delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	21	17	21	17	0	0	./.	4	4	5	5	19	17	19	17	5	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722289898	2	5229327	GT	G	540	PASS	-	-	-	-	-	Del	-	D	5229327	5229329	1	30	483.782	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	4	8	4	23	18	23	18	8	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722302682	2	43131430	A	AG	660	PASS	-	-	-	-	-	Ins	-	I	43131430	43131437	1	40	584.666	-	-	6	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	7	6	9	20	18	20	18	6	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722305605	2	52120846	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	52120846	52120853	1	28	478.363	-	-	6	1	1	-	-	./.	0	0	0	0	22	27	22	27	0	0	./.	6	3	10	5	39	20	39	21	10	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722321200	2	104861347	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	104861347	104861355	1	60	744.12	-	-	7	1	1	-	-	./.	0	0	0	0	24	21	25	22	0	0	./.	5	9	5	13	20	27	20	29	5	13	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722325538	2	119532777	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	119532777	119532786	1	35	529.106	-	-	8	1	1	-	-	./.	0	0	0	0	24	21	24	23	0	0	./.	4	6	6	7	14	15	14	15	6	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722335152	2	149629672	G	GC	480	PASS	KIF5C	ENST00000435030	r.?	-	-	Ins	upstream	I	149629672	149629682	1	24	424.007	-	-	9	1	1	KIF5C|ENST00000435030|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	KIF5C|ENST00000435030|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	22	13	22	0	0	./.	5	3	7	4	20	20	20	20	7	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722340943	2	169685484	TG	T	720	PASS	NOSTRIN	CCDS42771.1	r.?	-	-	Del	intronic	D	169685484	169685487	1	45	645.042	-	-	2	1	1	NOSTRIN|CCDS42771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOSTRIN|CCDS42771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	8	5	9	15	12	15	12	5	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722346395	2	185778049	TTTTA	T	269	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Del	intronic	D	185778049	185778062	4	12	266.961	-	-	3	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	3	2	7	3	13	14	13	14	7	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722368527	20	8624380	CA	C	426	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8624380	8624387	1	16	433.915	-	-	6	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	1	7	1	7	2	16	2	16	1	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722372295	20	20124652	CAA	C	689	PASS	C20orf26	CCDS33447.1	r.?	-	-	Del	intronic	D	20124652	20124657	2	33	639.734	-	-	4	1	1	C20orf26|CCDS33447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf26|CCDS33447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	10	2	12	2	24	16	24	16	12	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722414247	22	44760807	AAC	A	449	PASS	ENSG00000220702	ENST00000406912	r.?	-	-	Del	upstream	D	44760807	44760812	2	24	432.065	-	-	2	1	1	ENSG00000220702|ENST00000406912|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000220702|ENST00000406912|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	6	3	16	11	16	11	6	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722418847	3	6703629	TG	T	780	PASS	-	-	-	-	-	Del	-	D	6703629	6703634	1	56	699.744	-	-	4	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	7	8	9	21	20	21	20	8	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722427485	3	34998625	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	34998625	34998634	1	25	426.166	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	4	5	5	26	31	26	31	5	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722433546	3	55450002	TC	T	600	PASS	-	-	-	-	-	Del	-	D	55450002	55450005	1	35	538.728	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	6	6	7	23	17	23	17	6	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722438309	3	70607691	AT	A	420	PASS	-	-	-	-	-	Del	-	D	70607691	70607695	1	18	377.11	-	-	3	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	2	7	2	29	7	29	7	7	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722440992	3	75912009	C	CT	259	PASS	-	-	-	-	-	Ins	-	I	75912009	75912010	1	8	372.293	-	-	0	1	1	-	-	./.	0	0	0	0	12	20	12	21	0	0	./.	7	0	3	2	34	21	41	21	10	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722445952	3	96744874	GT	G	420	PASS	EPHA6	CCDS46876.1	r.?	-	-	Del	intronic	D	96744874	96744880	1	18	377.11	-	-	5	1	1	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA6|CCDS46876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	2	5	8	5	29	14	29	14	8	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722454598	3	124926019	GAGCCTGCT	G	261	PASS	SLC12A8	CCDS43143.1	r.?	-	-	Del	intronic	D	124926019	124926028	8	30	484.855	-	-	1	1	1	SLC12A8|CCDS43143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC12A8|CCDS43143.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	5	4	4	13	12	13	13	4	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722456878	3	132575404	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	132575404	132575413	1	18	366.272	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	5	2	5	3	15	15	16	15	6	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722466739	3	166205860	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	166205860	166205867	1	10	266.354	-	-	6	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	4	1	5	3	15	7	15	8	5	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722484038	4	23606967	CT	C	420	PASS	-	-	-	-	-	Del	-	D	23606967	23606970	1	20	376.946	-	-	2	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	3	4	3	6	11	22	11	22	3	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722495500	4	58685232	AT	A	629	PASS	-	-	-	-	-	Del	-	D	58685232	58685235	1	42	592.343	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	6	7	7	12	18	12	18	7	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722498368	4	66944255	T	TA	809	PASS	-	-	-	-	-	Ins	-	I	66944255	66944263	1	60	745.462	-	-	7	1	1	-	-	./.	0	0	0	0	26	24	27	24	0	0	./.	9	5	9	9	24	22	24	22	9	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722503386	4	83012234	AG	A	600	PASS	-	-	-	-	-	Del	-	D	83012234	83012237	1	35	537.29	-	-	2	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	6	6	8	19	22	19	22	6	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722505817	4	90006379	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	90006379	90006389	1	12	266.237	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	2	3	2	3	22	33	23	33	2	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722507121	4	95166040	T	TAA	389	PASS	SMARCAD1	CCDS47101.1	r.?	-	-	Ins	intronic	I	95166040	95166043	2	18	368.517	-	-	2	1	1	SMARCAD1|CCDS47101.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMARCAD1|CCDS47101.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	5	2	9	5	23	18	23	18	9	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722508690	4	101195764	CACTT	C	379	PASS	-	-	-	-	-	Del	-	D	101195764	101195770	4	33	646.192	-	-	1	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	2	10	4	9	13	25	13	27	4	11	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722509402	4	103490478	TGAGA	T	747	PASS	NFKB1	CCDS3657.1	r.?	-	-	Del	intronic	D	103490478	103490486	4	63	753.891	-	-	3	1	1	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	6	8	9	8	18	15	18	15	9	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722511963	4	112916439	AG	A	509	PASS	-	-	-	-	-	Del	-	D	112916439	112916442	1	28	475.613	-	-	2	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	3	6	6	6	18	18	18	18	6	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722513415	4	117651013	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	117651013	117651023	1	6	263.828	-	-	9	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	0	5	1	5	15	22	15	22	1	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722519627	4	137246736	TA	T	600	PASS	-	-	-	-	-	Del	-	D	137246736	137246742	1	35	537.892	-	-	5	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	4	6	6	7	17	18	17	18	6	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722530887	4	174179144	AG	A	780	PASS	GALNT7	CCDS3815.1	r.?	-	-	Del	intronic	D	174179144	174179147	1	44	700.042	-	-	2	1	1	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	10	3	11	3	28	8	28	8	11	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722544825	5	19997391	T	TA	300	PASS	CDH18	CCDS3652.1	r.?	-	-	Ins	intronic	I	19997391	19997397	1	10	266.755	-	-	5	1	1	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH18|CCDS3652.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	25	15	25	0	0	./.	4	1	6	1	24	15	24	15	6	1	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722552799	5	49917997	A	AACT	290	PASS	-	-	-	-	-	Ins	-	I	49917997	49918001	3	11	521.468	-	-	1	1	1	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	10	0	11	0	34	16	34	16	11	0	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722552986	5	50682810	CT	C	300	PASS	ISL1	CCDS43314.1	r.?	-	-	Del	intronic	D	50682810	50682817	1	12	269.765	-	-	6	1	1	ISL1|CCDS43314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ISL1|CCDS43314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	2	3	2	3	8	17	8	17	2	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722557951	5	67596634	ATTGT	A	509	PASS	PIK3R1	CCDS3993.1	r.5423_5426delUUGU	c.?	p.?	Del	3'UTR variant	D	67596634	67596643	4	30	484.975	-	-	2	1	1	PIK3R1|CCDS3993.1|r.5423_5426delUUGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PIK3R1|CCDS3993.1|r.5423_5426delUUGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	21	12	21	0	0	./.	4	5	5	6	13	23	13	23	5	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722558345	5	68683103	T	TA	420	PASS	RAD17	CCDS4004.1	r.?	-	-	Ins	intronic	I	68683103	68683113	1	18	370.446	-	-	9	1	1	RAD17|CCDS4004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAD17|CCDS4004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	22	12	0	0	./.	2	5	3	8	14	21	14	21	3	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722558820	5	72279690	C	CAT	360	PASS	FCHO2	CCDS47230.1	r.?	-	-	Ins	intronic	I	72279690	72279706	2	12	316.493	-	-	7	1	1	FCHO2|CCDS47230.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FCHO2|CCDS47230.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	5	1	6	3	21	13	22	13	6	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722568871	5	108699462	AAACT	A	509	PASS	PJA2	CCDS4099.1	r.?	-	-	Del	intronic	D	108699462	108699473	4	28	482.567	-	-	2	1	1	PJA2|CCDS4099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PJA2|CCDS4099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	15	27	17	0	0	./.	3	6	3	7	15	16	15	18	3	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722574466	5	129201620	GA	G	300	PASS	-	-	-	-	-	Del	-	D	129201620	129201628	1	12	269.765	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	6	3	14	16	14	16	6	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722579302	5	147586976	CA	C	600	PASS	SPINK6	CCDS34268.1	r.?	-	-	Del	intronic	D	147586976	147586978	1	27	539.53	-	-	1	1	1	SPINK6|CCDS34268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPINK6|CCDS34268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	2	8	4	8	16	24	16	24	4	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722591826	6	7246997	CGGGGGCGCGGCCTCGCAGGAGCA	C	261	PASS	RREB1	CCDS34335.1	r.4852_4874del23	c.4315_4337del23	p.G1439fs*49	Del	frameshift	D	7246997	7247022	23	24	485	-	-	1	1	1	RREB1|CCDS34335.1|r.4852_4874del23|c.4315_4337del23|p.G1439fs*49|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	RREB1|CCDS34335.1|r.4852_4874del23|c.4315_4337del23|p.G1439fs*49|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	12	17	12	0	0	./.	2	7	2	5	15	21	15	23	2	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722605983	6	41513941	AAG	A	358	PASS	FOXP4	CCDS34447.1	r.?	-	-	Del	upstream	D	41513941	41513944	2	18	376.018	-	-	1	1	1	FOXP4|CCDS34447.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	FOXP4|CCDS34447.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	23	29	23	29	0	0	./.	2	5	2	5	12	18	12	18	2	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722614081	6	66868104	G	GA	749	PASS	-	-	-	-	-	Ins	-	I	66868104	66868112	1	54	688.514	-	-	7	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	8	5	9	6	22	20	22	20	9	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722615086	6	69364974	T	TG	600	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	69364974	69364975	1	36	532.868	-	-	0	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	18	22	18	0	0	./.	5	5	6	7	14	14	14	14	6	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722618230	6	78640208	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	78640208	78640209	1	15	317.915	-	-	0	1	-	-	-	./.	0	0	0	0	21	11	22	11	0	0	./.	4	2	7	6	29	14	29	14	7	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722621720	6	90951314	CTGTT	C	538	PASS	BACH2	CCDS5026.1	r.?	-	-	Del	intronic	D	90951314	90951319	4	36	538.287	-	-	1	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	8	24	8	0	0	./.	5	5	5	5	15	13	15	13	5	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722622048	6	92170580	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	92170580	92170589	1	50	692.729	-	-	8	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	4	9	7	10	32	25	32	25	7	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722629556	6	115153105	TA	T	660	PASS	-	-	-	-	-	Del	-	D	115153105	115153110	1	36	592.778	-	-	4	1	1	-	-	./.	0	0	0	0	25	15	25	15	0	0	./.	3	8	5	11	16	25	16	25	5	11	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722637515	6	143640810	G	GT	600	PASS	AIG1	CCDS5198.1	r.?	-	-	Ins	intronic	I	143640810	143640820	1	32	532.868	-	-	9	1	1	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AIG1|CCDS5198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	3	7	5	7	18	22	18	22	5	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722637611	6	143927793	ATAGT	A	718	PASS	PHACTR2	CCDS47492.1	r.?	-	-	Del	upstream	D	143927793	143927803	4	54	698.147	-	-	2	1	1	PHACTR2|CCDS47492.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PHACTR2|ENST00000397980|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	5	8	5	10	21	25	21	25	6	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722639252	6	149655329	CTT	C	300	PASS	TAB2	CCDS5214.1	r.?	-	-	Del	intronic	D	149655329	149655332	2	12	269.444	-	-	2	1	1	TAB2|CCDS5214.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TAB2|CCDS5214.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	13	23	13	0	0	./.	3	2	6	3	20	16	20	16	6	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722639298	6	149760740	GGGT	G	1076	PASS	-	-	-	-	-	Del	-	D	149760740	149760745	3	57	1077.78	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	2	18	3	20	14	43	14	43	3	20	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722642887	6	159039954	A	AT	303	PASS	TMEM181	CCDS43520.1	r.?	-	-	Ins	intronic	I	159039954	159039961	1	25	420.876	-	-	6	1	1	TMEM181|CCDS43520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM181|CCDS43520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	4	4	5	8	17	19	17	19	5	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722643534	6	160910751	AG	A	360	PASS	-	-	-	-	-	Del	-	D	160910751	160910754	1	12	323.333	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	18	0	0	./.	1	5	1	7	11	20	11	28	1	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722643686	6	161316325	CT	C	780	PASS	-	-	-	-	-	Del	-	D	161316325	161316328	1	50	700.556	-	-	2	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	9	4	10	7	28	21	28	21	10	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722644331	6	163104588	TA	T	540	PASS	PARK2	CCDS5281.1	r.?	-	-	Del	intronic	D	163104588	163104590	1	18	485	-	-	1	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	8	1	10	4	27	19	27	19	10	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722646262	6	169460217	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	169460217	169460225	1	16	314.302	-	-	7	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	3	3	4	5	19	20	19	22	5	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722650534	7	10182686	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	10182686	10182694	1	10	266.531	-	-	7	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	4	1	5	3	26	15	26	15	5	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722650908	7	11242762	AT	A	689	PASS	-	-	-	-	-	Del	-	D	11242762	11242765	1	48	645.694	-	-	2	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	5	7	6	9	14	25	14	25	6	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722655162	7	23957646	GAAAATTGGAGAAG	GC	336	PASS	-	-	-	-	-	Complex	-	DI	23957647	23957659	13	48	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	7	5	0	0	20	19	24	20	7	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722658313	7	33678870	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	33678870	33678886	2	12	269.541	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	4	3	33	18	33	18	4	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722660708	7	41090692	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	41090692	41090700	1	25	426.449	-	-	7	1	1	-	-	./.	0	0	0	0	15	27	15	27	0	0	./.	4	4	7	7	19	27	19	27	7	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722665541	7	55895495	GCCACTTA	G	290	PASS	SEPT14	CCDS5519.2	r.?	-	-	Del	intronic	D	55895495	55895504	7	36	537.878	-	-	1	1	1	SEPT14|CCDS5519.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPT14|CCDS5519.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	5	6	9	17	19	17	19	6	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722666058	7	56761077	TTCTC	T	447	PASS	-	-	-	-	-	Del	-	D	56761077	56761083	4	24	485.174	-	-	2	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	7	2	8	4	26	20	26	20	8	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722672360	7	73172292	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	73172292	73172302	1	35	527.643	-	-	9	1	1	-	-	./.	0	0	0	0	25	9	25	9	0	0	./.	6	4	8	7	22	22	22	22	8	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722676601	7	84926774	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	84926774	84926783	1	72	799.592	-	-	8	1	1	-	-	./.	0	0	0	0	27	15	27	15	0	0	./.	8	7	10	8	29	29	29	29	10	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722676728	7	85352108	AG	A	420	PASS	-	-	-	-	-	Del	-	D	85352108	85352110	1	20	377.357	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	4	3	6	3	17	8	17	8	6	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722679294	7	94949205	CTG	C	780	PASS	PON1	CCDS5638.1	r.?	-	-	Del	intronic	D	94949205	94949211	2	50	700.204	-	-	2	1	1	PON1|CCDS5638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PON1|CCDS5638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	28	16	28	0	0	./.	9	4	9	5	23	16	23	16	9	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722679495	7	95703705	C	CA	252	PASS	DYNC1I1	CCDS5644.1	r.?	-	-	Ins	intronic	I	95703705	95703714	1	15	319.235	-	-	8	1	1	DYNC1I1|CCDS5644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DYNC1I1|CCDS5644.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	2	7	6	28	22	28	22	7	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722679528	7	95791480	TC	T	420	PASS	SLC25A13	CCDS5645.1	r.?	-	-	Del	intronic	D	95791480	95791482	1	20	377.357	-	-	1	1	1	SLC25A13|CCDS5645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A13|CCDS5645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	4	3	10	4	31	14	31	14	10	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722688149	7	123852320	TAC	T	329	PASS	-	-	-	-	-	Del	-	D	123852320	123852324	2	15	319.235	-	-	1	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	2	4	2	8	12	28	12	28	2	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722690477	7	130089413	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	130089413	130089422	1	48	639.071	-	-	8	1	-	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	7	5	9	5	26	24	26	24	9	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722695764	7	145939336	G	GA	420	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	145939336	145939343	1	20	373.143	-	-	6	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	4	3	7	8	28	24	28	24	7	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722698898	7	154130958	CCTA	C	569	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154130958	154130963	3	32	539.082	-	-	1	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	3	7	5	10	16	18	16	18	5	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722708802	8	22204953	AT	A	420	PASS	PIWIL2	CCDS6029.1	r.?	-	-	Del	intronic	D	22204953	22204955	1	14	377.953	-	-	1	1	1	PIWIL2|CCDS6029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIWIL2|CCDS6029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	1	6	8	8	24	22	24	22	8	8	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722713827	8	36314061	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	36314061	36314068	1	15	311.317	-	-	6	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	4	2	9	3	23	10	23	10	9	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722715093	8	40072435	AAC	A	254	PASS	-	-	-	-	-	Del	-	D	40072435	40072453	2	12	269.967	-	-	8	1	-	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	3	2	3	2	25	22	25	22	3	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722716862	8	49924566	G	GAGAGAGAGAGAAAATGAGAGAGAGAGAGAGAA	360	PASS	-	-	-	-	-	Ins	-	I	49924566	49924576	32	12	208.365	-	-	0	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	1	0	0	26	15	26	15	5	1	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722725840	8	80202467	TCATTAA	T	348	PASS	-	-	-	-	-	Del	-	D	80202467	80202474	6	40	647.92	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	3	9	5	8	17	27	17	29	5	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722729024	8	91864012	TC	T	720	PASS	NECAB1	CCDS47889.1	r.?	-	-	Del	intronic	D	91864012	91864017	1	48	647.92	-	-	4	1	1	NECAB1|CCDS47889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NECAB1|CCDS47889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	5	7	6	10	19	23	19	23	6	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722738834	8	124365605	A	AAAC	840	PASS	ATAD2	CCDS6343.1	r.?	-	-	Ins	intronic	I	124365605	124365629	3	55	730.62	-	-	7	1	-	ATAD2|CCDS6343.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATAD2|CCDS6343.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	10	4	12	4	45	30	45	30	12	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722761286	9	71545738	CCTT	C	447	PASS	PIP5K1B	CCDS6624.1	r.?	-	-	Del	intronic	D	71545738	71545742	3	30	486.685	-	-	1	1	1	PIP5K1B|CCDS6624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIP5K1B|CCDS6624.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	4	5	4	6	20	16	20	16	4	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722770086	9	101092147	C	CT	480	PASS	GABBR2	CCDS6736.1	r.?	-	-	Ins	intronic	I	101092147	101092149	1	24	427.792	-	-	1	1	1	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	6	5	30	21	30	21	6	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722774600	9	115323253	CT	C	633	PASS	KIAA1958	CCDS35108.1	r.?	-	-	Del	intronic	D	115323253	115323257	1	40	594.837	-	-	3	1	1	KIAA1958|CCDS35108.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	KIAA1958|CCDS35108.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	7	4	7	5	18	12	18	12	7	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722776784	9	122294970	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	122294970	122294980	1	14	370.104	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	6	1	7	6	18	12	18	13	7	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722782095	9	137971450	C	CA	540	PASS	OLFM1	CCDS6986.1	r.?	-	-	Ins	intronic	I	137971450	137971459	1	30	477.654	-	-	8	1	1	OLFM1|CCDS6986.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OLFM1|CCDS6986.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	5	5	6	15	16	15	17	5	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722785436	X	11520903	AC	A	660	PASS	ARHGAP6	CCDS14140.1	r.?	-	-	Del	intronic	D	11520903	11520905	1	42	594.934	-	-	1	1	1	ARHGAP6|CCDS14140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP6|CCDS14140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	6	5	10	5	24	15	24	15	10	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722785538	X	12014238	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	12014238	12014248	1	64	748.76	-	-	9	1	1	-	-	./.	0	0	0	0	25	25	25	25	0	0	./.	7	7	7	10	25	32	25	32	7	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722788384	X	23967399	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	23967399	23967409	1	35	533.625	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	10	14	0	0	./.	4	6	8	10	21	34	22	35	8	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722788905	X	25784667	TA	T	480	PASS	-	-	-	-	-	Del	-	D	25784667	25784673	1	21	432.68	-	-	5	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	6	2	6	2	22	5	22	5	6	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722791167	X	35265933	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	35265933	35265941	1	45	641.795	-	-	7	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	8	6	11	12	31	12	31	6	11	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722791184	X	35314355	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	35314355	35314365	1	15	320.295	-	-	9	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	4	2	7	6	21	21	21	22	7	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722791248	X	35610218	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	35610218	35610226	1	20	374.38	-	-	7	1	1	-	-	./.	0	0	0	0	26	10	26	10	0	0	./.	3	4	4	4	18	26	18	27	4	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722793922	X	47066967	CA	C	600	PASS	UBA1	CCDS14275.1	r.?	-	-	Del	intronic	D	47066967	47066969	1	35	540.849	-	-	1	1	1	UBA1|CCDS14275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBA1|CCDS14275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	6	4	8	7	21	25	21	25	8	7	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722795759	X	55150071	TG	T	540	PASS	-	-	-	-	-	Del	-	D	55150071	55150079	1	10	486.764	-	-	7	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	0	9	2	10	23	21	23	21	2	10	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722800968	X	83977757	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	83977757	83977767	1	10	265.608	-	-	9	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	4	1	4	1	37	25	37	26	4	1	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722805499	X	102750391	AC	A	300	PASS	RAB40A	CCDS35357.1	r.?	-	-	Del	downstream	D	102750391	102750395	1	10	267.414	-	-	3	1	1	RAB40A|CCDS35357.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RAB40A|CCDS35357.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	17	12	17	0	0	./.	4	1	7	4	20	24	20	24	7	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722805504	X	102789799	AC	A	300	PASS	-	-	-	-	-	Del	-	D	102789799	102789809	1	12	267.414	-	-	9	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	2	3	2	3	30	22	30	22	2	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722810436	X	123332593	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	123332593	123332594	1	12	266.21	-	-	0	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	3	2	4	4	21	15	21	16	4	4	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722810736	X	124693447	T	TA	749	PASS	-	-	-	-	-	Ins	-	I	124693447	124693456	1	36	694.073	-	-	8	1	1	-	-	./.	0	0	0	0	24	23	24	23	0	0	./.	11	2	11	2	25	20	25	20	11	2	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722810774	X	124788173	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	124788173	124788183	1	18	369.564	-	-	9	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	5	2	8	3	22	10	22	11	8	3	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722813115	X	135392669	G	GA	420	PASS	GPR112	CCDS35409.1	r.?	-	-	Ins	intronic	I	135392669	135392678	1	18	374.38	-	-	8	1	1	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	2	5	3	6	16	13	16	13	3	6	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722813219	X	135808006	G	GA	540	PASS	ARHGEF6	CCDS14660.1	r.?	-	-	Ins	intronic	I	135808006	135808016	1	30	480.142	-	-	9	1	1	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGEF6|CCDS14660.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	5	4	10	5	30	16	30	16	10	5	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722816175	X	147519068	G	GA	817	PASS	-	-	-	-	-	Ins	-	I	147519068	147519078	1	64	748.76	-	-	9	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	7	7	7	9	23	24	24	24	7	9	1	1	1	1	1	1	1	1
2662731	PD18178a	PD18178b	2722817044	X	151274498	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	151274498	151274506	1	49	641.795	-	-	7	1	1	-	-	./.	0	0	0	0	20	30	20	30	0	0	./.	6	6	7	10	23	28	23	30	7	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725232010	1	14897635	TG	T	300	PASS	-	-	-	-	-	Del	-	D	14897635	14897637	1	10	267.219	-	-	1	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	4	1	7	3	23	19	23	19	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725232460	1	15992575	C	CT	420	PASS	DDI2	CCDS30607.1	r.7661_7662insu	c.?	p.?	Ins	3'UTR variant	I	15992575	15992584	1	14	371.578	-	-	8	1	1	DDI2|CCDS30607.1|r.7661_7662insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	DDI2|CCDS30607.1|r.7661_7662insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	16	18	16	0	0	./.	6	1	8	3	28	15	28	15	8	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725234046	1	19980300	AACTT	A	269	PASS	NBL1	CCDS196.1	r.?	-	-	Del	intronic	D	19980300	19980307	4	12	267.219	-	-	1	1	1	NBL1|CCDS196.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NBL1|CCDS196.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	3	3	13	9	13	9	3	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725235062	1	22515041	ACTGCTCAGTG	A	319	PASS	-	-	-	-	-	Del	-	D	22515041	22515054	10	42	589.928	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	6	5	6	17	15	17	16	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725236576	1	26385621	TTC	T	420	PASS	TRIM63	CCDS273.1	r.?	-	-	Del	intronic	D	26385621	26385626	2	18	375.792	-	-	2	1	1	TRIM63|CCDS273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRIM63|CCDS273.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	5	2	8	4	17	19	17	19	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725239071	1	33229086	TAGA	T	276	PASS	KIAA1522	CCDS41298.1	r.?	-	-	Del	intronic	D	33229086	33229093	3	18	373.384	-	-	2	1	1	KIAA1522|CCDS41298.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1522|CCDS41298.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	5	2	8	3	21	11	23	11	10	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725242842	1	44919132	A	AT	540	PASS	RNF220	CCDS510.1	r.?	-	-	Ins	intronic	I	44919132	44919139	1	30	477.743	-	-	6	1	1	RNF220|CCDS510.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF220|CCDS510.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	5	4	7	6	20	25	20	25	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725247432	1	60392611	G	GT	300	PASS	CYP2J2	CCDS613.1	r.?	-	-	Ins	upstream	I	60392611	60392615	1	6	261.198	-	-	3	1	1	CYP2J2|CCDS613.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CYP2J2|CCDS613.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	4	18	4	0	0	./.	5	0	8	1	24	11	24	11	8	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725248468	1	63045498	C	CA	517	PASS	DOCK7	CCDS30734.1	r.?	-	-	Ins	intronic	I	63045498	63045507	1	30	477.743	-	-	8	1	1	DOCK7|CCDS30734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK7|CCDS30734.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	13	18	0	0	./.	5	4	5	6	27	22	27	22	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725251918	1	73480414	C	CA	454	PASS	-	-	-	-	-	Ins	-	I	73480414	73480421	1	24	424.66	-	-	6	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	3	5	4	6	13	22	13	22	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725253178	1	77231467	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	77231467	77231476	1	12	265.413	-	-	8	1	1	-	-	./.	0	0	0	0	28	16	28	16	0	0	./.	2	3	6	5	20	21	21	21	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725255788	1	85493601	C	CA	660	PASS	MCOLN3	CCDS701.1	r.?	-	-	Ins	intronic	I	85493601	85493610	1	42	582.101	-	-	8	1	1	MCOLN3|CCDS701.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCOLN3|CCDS701.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	17	14	17	0	0	./.	6	5	8	6	30	20	30	20	8	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725256716	1	87950492	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	87950492	87950502	1	18	371.578	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	5	2	6	3	18	24	19	24	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725259504	1	96374810	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	96374810	96374819	1	35	526.009	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	6	7	7	22	28	22	28	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725260975	1	101682315	T	TA	1140	PASS	-	-	-	-	-	Ins	-	I	101682315	101682317	1	104	1008.57	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	12	7	12	12	33	24	34	24	12	12	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725263644	1	109749877	GCTTT	G	300	PASS	KIAA1324	CCDS794.1	r.?	-	-	Del	downstream	D	109749877	109749890	4	10	256.984	-	-	3	1	-	KIAA1324|CCDS794.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KIAA1324|CCDS794.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	6	3	27	19	27	19	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725272884	1	151429909	GC	G	480	PASS	POGZ	CCDS997.1	r.?	-	-	Del	intronic	D	151429909	151429916	1	16	429.477	-	-	6	1	1	POGZ|CCDS997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	POGZ|CCDS997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	1	7	3	8	17	26	17	26	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725273320	1	152520263	G	GT	360	PASS	LCE3C	ENST00000419212	r.?	-	-	Ins	intronic	I	152520263	152520271	1	12	318.495	-	-	7	1	1	LCE3C|ENST00000419212|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LCE3C|ENST00000419212|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	1	5	7	8	37	39	38	39	7	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725273916	1	154068829	T	TA	720	PASS	NUP210L	CCDS41399.1	r.?	-	-	Ins	intronic	I	154068829	154068831	1	49	633.98	-	-	1	1	1	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	6	6	7	7	26	26	26	26	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725274172	1	154518726	TTTTAATAGT	TGGC	261	PASS	UBE2Q1	CCDS1069.1	r.?	-	-	Complex	downstream	DI	154518727	154518735	9	24	0	-	-	0	1	1	UBE2Q1|CCDS1069.1|r.?|-|-|protein_coding:indel:5KB_downstream_variant|SO:0000010:SO:1000032:SO:0001633	TDRD10|CCDS30878.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	1	10	1	10	0	0	./.	2	7	0	0	15	24	18	25	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725275540	1	157660985	C	CA	480	PASS	FCRL3	CCDS1167.1	r.?	-	-	Ins	intronic	I	157660985	157660994	1	24	424.66	-	-	8	1	1	FCRL3|CCDS1167.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FCRL3|CCDS1167.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	3	5	5	8	28	45	28	45	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725275627	1	157982325	C	CT	389	PASS	KIRREL	CCDS1172.2	r.?	-	-	Ins	intronic	I	157982325	157982334	1	20	364.353	-	-	8	1	1	KIRREL|CCDS1172.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIRREL|CCDS1172.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	4	3	8	4	31	28	32	28	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725275926	1	158904924	ACT	A	660	PASS	PYHIN1	CCDS1178.1	r.?	-	-	Del	intronic	D	158904924	158904930	2	36	588.724	-	-	2	1	1	PYHIN1|CCDS1178.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PYHIN1|CCDS1178.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	8	3	10	5	44	26	44	26	10	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725276048	1	159245599	G	GA	420	PASS	OR10J3	ENST00000389011	r.?	-	-	Ins	downstream	I	159245599	159245608	1	18	371.578	-	-	8	1	1	OR10J3|ENST00000389011|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	OR10J3|ENST00000389011|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	15	26	15	27	0	0	./.	5	2	9	6	44	28	44	28	9	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725281454	1	172722072	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	172722072	172722082	1	18	370.976	-	-	9	1	1	-	-	./.	0	0	0	0	27	16	27	18	0	0	./.	5	2	8	2	39	32	39	33	8	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725281574	1	173114211	GA	G	420	PASS	-	-	-	-	-	Del	-	D	173114211	173114213	1	18	375.792	-	-	1	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	5	2	7	3	43	35	43	35	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725282833	1	176164204	C	CA	480	PASS	RFWD2	CCDS30944.1	r.?	-	-	Ins	intronic	I	176164204	176164206	1	25	416.231	-	-	1	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	4	4	7	7	25	31	25	33	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725283601	1	178657468	AT	A	420	PASS	-	-	-	-	-	Del	-	D	178657468	178657477	1	20	375.792	-	-	8	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	4	3	5	5	34	52	34	52	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725284010	1	179362869	C	CT	660	PASS	C1orf125	CCDS30948.1	r.?	-	-	Ins	intronic	I	179362869	179362879	1	40	583.908	-	-	9	1	-	C1orf125|CCDS30948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf125|CCDS30948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	14	24	15	0	0	./.	7	4	9	10	48	52	48	52	9	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725284677	1	180671628	A	AT	745	PASS	XPR1	CCDS1340.1	r.?	-	-	Ins	intronic	I	180671628	180671638	1	66	796.238	-	-	9	1	1	XPR1|CCDS1340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XPR1|CCDS1340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	16	27	16	0	0	./.	10	5	12	5	63	34	63	34	12	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725286709	1	186044497	TA	T	749	PASS	HMCN1	CCDS30956.1	r.?	-	-	Del	intronic	D	186044497	186044502	1	56	697.899	-	-	4	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	6	7	8	9	19	21	19	21	8	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725286959	1	186786423	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	186786423	186786433	1	35	530.825	-	-	9	1	1	-	-	./.	0	0	0	0	24	17	25	17	0	0	./.	4	6	10	7	40	52	41	52	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725287107	1	187134402	A	ATCTACCAG	261	PASS	-	-	-	-	-	Ins	-	I	187134402	187134412	8	30	438.609	-	-	1	1	1	-	-	./.	0	0	0	0	24	20	24	20	0	0	./.	5	4	6	3	33	61	33	62	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725291677	1	199722530	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	199722530	199722540	1	12	265.413	-	-	9	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	3	2	4	3	31	57	31	57	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725292789	1	201944816	C	CA	397	PASS	-	-	-	-	-	Ins	-	I	201944816	201944825	1	20	371.578	-	-	8	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	3	4	8	8	43	53	43	53	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725293289	1	202922580	T	TA	780	PASS	ADIPOR1	CCDS1430.1	r.?	-	-	Ins	intronic	I	202922580	202922584	1	44	690.073	-	-	3	1	1	ADIPOR1|CCDS1430.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ADIPOR1|CCDS1430.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	28	12	28	0	0	./.	3	10	8	14	32	33	32	33	8	14	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725294732	1	206500688	AG	A	266	PASS	-	-	-	-	-	Del	-	D	206500688	206500691	1	12	247.953	-	-	2	1	1	-	-	./.	0	0	0	0	3	14	3	14	0	0	./.	2	3	2	5	16	24	16	24	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725295568	1	209171846	TTTGG	T	563	PASS	-	-	-	-	-	Del	-	D	209171846	209171853	4	56	697.297	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	6	8	6	31	43	31	43	8	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725296713	1	211909415	GATA	G	298	PASS	-	-	-	-	-	Del	-	D	211909415	211909423	3	15	317.291	-	-	2	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	2	4	3	5	27	28	27	28	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725297811	1	214303517	GA	G	480	PASS	-	-	-	-	-	Del	-	D	214303517	214303525	1	24	429.477	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	5	5	6	31	33	31	33	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725298729	1	216763821	A	AT	660	PASS	ESRRG	CCDS1517.1	r.?	-	-	Ins	intronic	I	216763821	216763827	1	42	582.704	-	-	5	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	11	23	11	0	0	./.	5	6	8	10	21	34	21	34	8	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725303947	1	229185935	T	TA	577	PASS	-	-	-	-	-	Ins	-	I	229185935	229185942	1	32	530.825	-	-	6	1	1	-	-	./.	0	0	0	0	21	19	21	20	0	0	./.	3	7	7	9	38	46	39	47	7	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725306057	1	234536469	ACAGT	A	298	PASS	TARBP1	CCDS1601.1	r.?	-	-	Del	intronic	D	234536469	234536478	4	16	322.107	-	-	2	1	1	TARBP1|CCDS1601.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TARBP1|CCDS1601.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	3	3	4	4	37	29	37	29	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725307720	1	237635536	A	AT	780	PASS	RYR2	ENST00000366574	r.?	-	-	Ins	intronic	I	237635536	237635544	1	56	688.869	-	-	7	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	13	25	13	0	0	./.	6	7	7	7	40	38	40	39	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725309212	1	240963852	AAC	A	300	PASS	RGS7	CCDS31071.1	r.?	-	-	Del	intronic	D	240963852	240963868	2	12	268.423	-	-	7	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	3	2	3	2	36	35	36	35	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725311449	1	245426131	CAG	C	360	PASS	KIF26B	CCDS44342.1	r.?	-	-	Del	intronic	D	245426131	245426135	2	12	322.107	-	-	1	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	1	5	1	6	26	23	26	23	1	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725311482	1	245483950	G	GT	360	PASS	KIF26B	CCDS44342.1	r.?	-	-	Ins	intronic	I	245483950	245483959	1	15	318.495	-	-	8	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	2	5	29	35	30	35	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725311656	1	245899287	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	245899287	245899297	1	18	367.363	-	-	9	1	1	-	-	./.	0	0	0	0	14	21	14	22	0	0	./.	5	2	6	4	41	31	41	31	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725314388	10	3475716	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	3475716	3475725	1	10	266.733	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	4	2	7	12	15	12	15	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725318464	10	14695227	G	GAACT	689	PASS	FAM107B	CCDS7102.1	r.?	-	-	Ins	intronic	I	14695227	14695232	4	40	618.486	-	-	1	1	1	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM107B|CCDS7102.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	20	25	20	0	0	./.	3	9	3	10	11	23	11	23	3	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725322384	10	27608996	C	CT	420	PASS	ENSG00000223846	ENST00000432349	r.?	-	-	Ins	downstream	I	27608996	27609001	1	20	372.825	-	-	4	1	1	ENSG00000223846|ENST00000432349|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000223846|ENST00000432349|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	15	17	15	0	0	./.	4	3	5	6	13	11	13	11	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725335474	10	70110226	G	GA	480	PASS	RUFY2	CCDS41534.1	r.?	-	-	Ins	intronic	I	70110226	70110235	1	25	426.773	-	-	8	1	1	RUFY2|CCDS41534.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RUFY2|CCDS41534.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	16	16	0	0	./.	4	4	6	5	19	10	19	10	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725336277	10	72337655	C	CT	389	PASS	-	-	-	-	-	Ins	-	I	72337655	72337664	1	20	372.223	-	-	8	1	1	-	-	./.	0	0	0	0	26	12	26	12	0	0	./.	4	3	8	6	15	11	15	11	8	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725341046	10	91274882	AAAAC	A	360	PASS	SLC16A12	CCDS7404.1	r.?	-	-	Del	intronic	D	91274882	91274890	4	15	323.692	-	-	1	1	-	SLC16A12|CCDS7404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC16A12|CCDS7404.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	2	5	1	14	11	14	11	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725342735	10	96753844	TA	T	389	PASS	CYP2C9	CCDS7437.1	r.?	-	-	Del	downstream	D	96753844	96753847	1	18	366.804	-	-	2	1	1	CYP2C9|CCDS7437.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CYP2C9|CCDS7437.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	4	5	7	14	7	14	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725345537	10	107103058	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	107103058	107103064	1	15	320.08	-	-	5	1	1	-	-	./.	0	0	0	0	11	17	13	18	0	0	./.	4	2	6	5	21	6	22	6	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725346374	10	110169678	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	110169678	110169688	1	12	266.733	-	-	9	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	2	3	5	8	10	24	10	24	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725346529	10	110899485	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	110899485	110899495	1	12	266.131	-	-	9	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	3	2	3	2	23	15	23	16	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725347056	10	112840325	TC	T	360	PASS	ADRA2A	CCDS7569.2	r.3537delC	c.?	p.?	Del	3'UTR variant	D	112840325	112840332	1	15	323.09	-	-	6	1	1	ADRA2A|CCDS7569.2|r.3537delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ADRA2A|CCDS7569.2|r.3537delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	20	17	20	0	0	./.	2	4	3	6	14	16	14	16	3	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725347757	10	115760013	A	AAT	269	PASS	-	-	-	-	-	Ins	-	I	115760013	115760024	2	10	263.723	-	-	5	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	3	5	12	11	12	11	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725348658	10	120485031	T	TA	420	PASS	C10orf46	CCDS41570.1	r.?	-	-	Ins	intronic	I	120485031	120485039	1	20	370.416	-	-	7	1	1	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf46|CCDS41570.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	4	6	5	13	8	13	8	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725350826	10	129029021	G	GT	269	PASS	DOCK1	ENST00000398025	r.?	-	-	Ins	intronic	I	129029021	129029030	1	10	262.519	-	-	8	1	-	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	25	21	25	0	0	./.	1	4	6	7	10	12	10	12	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725352936	11	1817223	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	1817223	1817232	1	42	573.895	-	-	8	1	-	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	5	6	6	9	22	32	22	32	6	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725354177	11	5035596	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	5035596	5035606	1	42	583.528	-	-	9	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	5	6	8	8	34	25	34	26	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725358683	11	16821114	C	CA	600	PASS	PLEKHA7	CCDS31434.1	r.?	-	-	Ins	intronic	I	16821114	16821124	1	35	533.764	-	-	9	1	1	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	19	23	19	0	0	./.	4	6	7	6	29	18	30	18	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725361697	11	24479617	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	24479617	24479619	1	18	373.635	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	2	5	4	7	32	26	32	26	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725362577	11	26272545	GTGAC	G	478	PASS	-	-	-	-	-	Del	-	D	26272545	26272556	4	30	485.806	-	-	2	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	5	4	5	42	40	43	40	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725363031	11	27442687	AG	A	360	PASS	LGR4	CCDS31449.1	r.?	-	-	Del	intronic	D	27442687	27442690	1	12	323.268	-	-	2	1	1	LGR4|CCDS31449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LGR4|CCDS31449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	1	5	6	6	15	16	15	16	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725363588	11	29368713	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	29368713	29368719	1	35	533.764	-	-	5	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	6	4	7	6	28	25	29	26	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725364892	11	33149271	ACTGTTCTTGTGCTTT	A	261	PASS	CSTF3	CCDS7883.1	r.?	-	-	Del	intronic	D	33149271	33149288	15	28	484	-	-	1	1	1	CSTF3|CCDS7883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSTF3|CCDS7883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	24	8	24	0	0	./.	3	6	3	6	22	38	22	38	3	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725365087	11	33491580	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	33491580	33491590	1	30	477.979	-	-	9	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	4	5	5	9	34	40	35	42	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725366469	11	37269755	TAAAC	T	420	PASS	-	-	-	-	-	Del	-	D	37269755	37269763	4	18	377.849	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	5	2	6	2	36	25	36	25	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725366872	11	38482472	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	38482472	38482480	1	25	425.807	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	18	18	0	0	./.	4	4	6	4	23	25	23	25	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725366908	11	38565012	C	CT	1200	PASS	-	-	-	-	-	Ins	-	I	38565012	38565021	1	117	1064.52	-	-	8	1	1	-	-	./.	0	0	0	0	17	2	17	2	0	0	./.	12	8	15	9	33	11	33	11	15	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725366939	11	38667441	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	38667441	38667448	1	45	640.516	-	-	6	1	1	-	-	./.	0	0	0	0	18	16	19	16	0	0	./.	4	8	6	9	31	32	31	32	6	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725367490	11	39687521	ATC	A	269	PASS	-	-	-	-	-	Del	-	D	39687521	39687525	2	12	264.474	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	3	2	3	2	26	28	26	28	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725367708	11	40266244	G	GT	569	PASS	LRRC4C	CCDS31464.1	r.?	-	-	Ins	intronic	I	40266244	40266251	1	27	529.549	-	-	6	1	1	LRRC4C|CCDS31464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC4C|CCDS31464.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	8	7	8	39	32	39	34	7	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725368282	11	41839302	TA	T	420	PASS	-	-	-	-	-	Del	-	D	41839302	41839304	1	18	377.247	-	-	1	1	1	-	-	./.	0	0	0	0	13	23	13	23	0	0	./.	2	5	9	11	34	34	34	34	9	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725368899	11	43624922	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	43624922	43624932	1	18	370.624	-	-	9	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	5	2	7	7	28	31	29	31	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725369950	11	46799231	CT	C	360	PASS	CKAP5	CCDS31477.1	r.?	-	-	Del	intronic	D	46799231	46799234	1	15	323.871	-	-	2	1	1	CKAP5|CCDS31477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CKAP5|CCDS31477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	25	17	25	0	0	./.	4	2	7	4	29	22	29	22	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725375713	11	65105284	A	AT	269	PASS	DPF2	CCDS8100.1	r.?	-	-	Ins	intronic	I	65105284	65105293	1	12	260.259	-	-	8	1	1	DPF2|CCDS8100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPF2|CCDS8100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	33	5	33	5	0	0	./.	3	2	4	2	29	15	29	15	4	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725375776	11	65238041	A	ATTG	563	PASS	-	-	-	-	-	Ins	-	I	65238041	65238043	3	36	678.239	-	-	0	1	1	-	-	./.	0	0	0	0	14	3	14	3	0	0	./.	11	2	11	4	21	19	21	19	11	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725377078	11	68250269	A	AT	960	PASS	SAPS3	CCDS8182.1	r.?	-	-	Ins	intronic	I	68250269	68250278	1	80	851.012	-	-	8	1	1	SAPS3|CCDS8182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SAPS3|CCDS8182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	9	7	13	9	31	23	31	23	13	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725377760	11	70094462	AG	A	300	PASS	-	-	-	-	-	Del	-	D	70094462	70094467	1	12	269.892	-	-	4	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	5	4	23	26	23	26	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725381585	11	80973813	CAT	C	1140	PASS	-	-	-	-	-	Del	-	D	80973813	80973817	2	110	1024.99	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	10	9	15	16	35	32	35	32	15	16	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725382921	11	84825698	CT	C	540	PASS	DLG2	CCDS44690.1	r.?	-	-	Del	intronic	D	84825698	84825702	1	28	485.806	-	-	3	1	1	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS44690.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	6	3	7	3	34	16	34	16	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725383673	11	86902969	A	AT	540	PASS	TMEM135	CCDS8280.1	r.?	-	-	Ins	intronic	I	86902969	86902977	1	30	476.775	-	-	7	1	1	TMEM135|CCDS8280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM135|CCDS8280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	27	25	27	0	0	./.	5	4	8	4	25	18	25	18	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725384449	11	89087178	A	AT	629	PASS	NOX4	CCDS8285.1	r.?	-	-	Ins	intronic	I	89087178	89087184	1	40	586.538	-	-	5	1	1	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	4	7	5	7	37	32	37	32	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725384760	11	90026790	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	90026790	90026796	1	36	586.538	-	-	5	1	1	-	-	./.	0	0	0	0	15	27	15	28	0	0	./.	3	8	5	9	28	36	28	36	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725384863	11	90613828	C	CT	272	PASS	-	-	-	-	-	Ins	-	I	90613828	90613837	1	21	427.011	-	-	8	1	1	-	-	./.	0	0	0	0	20	24	23	24	0	0	./.	2	6	2	6	10	19	10	20	2	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725384901	11	90713670	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	90713670	90713679	1	15	319.656	-	-	8	1	-	-	-	./.	0	0	0	0	25	31	25	31	0	0	./.	4	2	8	7	23	15	23	15	8	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725388699	11	103554134	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	103554134	103554144	1	12	320.258	-	-	9	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	1	5	4	5	14	15	14	15	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725388816	11	103983022	C	CT	660	PASS	PDGFD	CCDS41703.1	r.?	-	-	Ins	intronic	I	103983022	103983032	1	42	579.313	-	-	9	1	1	PDGFD|CCDS41703.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDGFD|CCDS41703.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	5	6	5	8	15	17	15	18	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725391556	11	114846243	G	GT	389	PASS	-	-	-	-	-	Ins	-	I	114846243	114846252	1	20	373.635	-	-	8	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	4	3	7	3	23	8	23	8	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725391716	11	115533270	A	AT	869	PASS	-	-	-	-	-	Ins	-	I	115533270	115533278	1	70	799.441	-	-	7	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	9	6	11	11	13	11	14	11	11	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725394693	11	126948457	AATT	A	480	PASS	-	-	-	-	-	Del	-	D	126948457	126948462	3	9	431.827	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	0	8	2	9	9	15	9	15	2	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725398317	12	4984700	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	4984700	4984708	1	40	585.573	-	-	7	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	7	4	7	5	32	26	32	26	7	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725401221	12	10877649	G	GA	480	PASS	CSDAP1	CCDS8630.1	r.?	-	-	Ins	upstream	I	10877649	10877658	1	24	425.543	-	-	8	1	1	CSDAP1|CCDS8630.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CSDAP1|CCDS8630.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	25	11	25	11	0	0	./.	3	5	3	5	25	35	25	36	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725404685	12	19619892	G	GT	360	PASS	AEBP2	CCDS44842.1	r.?	-	-	Ins	intronic	I	19619892	19619900	1	15	320.06	-	-	7	1	1	AEBP2|CCDS44842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AEBP2|CCDS44842.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	23	18	23	0	0	./.	2	4	4	4	33	30	33	30	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725404950	12	20198733	GA	G	780	PASS	-	-	-	-	-	Del	-	D	20198733	20198736	1	50	701.29	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	9	8	13	16	34	16	34	8	13	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725404987	12	20322789	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	20322789	20322799	1	40	584.369	-	-	9	1	1	-	-	./.	0	0	0	0	16	25	17	26	0	0	./.	4	7	8	9	29	48	29	49	8	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725407453	12	26330017	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	26330017	26330025	1	20	364.975	-	-	7	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	4	5	4	36	31	36	32	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725411335	12	38386404	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	38386404	38386413	1	32	533.434	-	-	8	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	3	7	7	11	34	37	34	37	7	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725413572	12	44001621	GA	G	540	PASS	-	-	-	-	-	Del	-	D	44001621	44001627	1	28	484.305	-	-	5	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	6	3	6	7	30	29	30	29	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725415021	12	48729049	ACT	A	360	PASS	ZNF641	CCDS8763.1	r.?	-	-	Del	downstream	D	48729049	48729056	2	12	323.672	-	-	3	1	1	ZNF641|CCDS8763.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF641|CCDS8763.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	12	12	12	0	0	./.	1	5	1	7	24	24	24	24	1	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725416238	12	50911612	C	CT	300	PASS	DIP2B	CCDS31799.1	r.?	-	-	Ins	intronic	I	50911612	50911620	1	12	264.911	-	-	7	1	1	DIP2B|CCDS31799.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DIP2B|CCDS31799.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	26	20	27	0	0	./.	2	3	5	5	20	28	20	28	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725418004	12	54705738	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	54705738	54705747	1	20	373.404	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	3	6	5	35	19	35	19	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725418990	12	57117934	G	GC	660	PASS	NACA2	CCDS44925.1	r.?	-	-	Ins	intronic	I	57117934	57117938	1	36	583.767	-	-	3	1	1	NACA2|CCDS44925.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NACA2|CCDS44925.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	3	8	4	11	22	22	22	23	4	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725419183	12	57632190	T	TG	420	PASS	SHMT2	CCDS8934.1	r.?	-	-	Ins	downstream	I	57632190	57632199	1	20	373.404	-	-	8	1	1	SHMT2|CCDS8934.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NDUFA4L2|CCDS8935.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	20	0	0	./.	3	4	3	5	20	21	20	21	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725420031	12	60009250	TG	T	509	PASS	-	-	-	-	-	Del	-	D	60009250	60009252	1	30	484.305	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	5	4	5	5	16	15	16	15	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725420032	12	60017733	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	60017733	60017741	1	12	266.717	-	-	7	1	1	-	-	./.	0	0	0	0	9	28	10	28	0	0	./.	3	2	4	3	29	14	30	15	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725421921	12	65546664	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	65546664	65546672	1	16	409.287	-	-	7	1	1	-	-	./.	0	0	0	0	8	21	9	21	0	0	./.	7	1	9	4	28	22	28	23	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725421985	12	65801310	A	AT	509	PASS	MSRB3	CCDS31853.1	r.?	-	-	Ins	intronic	I	65801310	65801318	1	30	479.488	-	-	7	1	1	MSRB3|CCDS31853.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSRB3|CCDS31853.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	14	0	0	./.	5	4	7	6	43	34	45	34	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725425426	12	75449987	C	CA	420	PASS	KCNC2	CCDS9005.1	r.?	-	-	Ins	intronic	I	75449987	75449993	1	18	373.404	-	-	5	1	1	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	5	2	5	4	24	27	24	27	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725426670	12	78811150	CACA	C	654	PASS	-	-	-	-	-	Del	-	D	78811150	78811156	3	60	754.634	-	-	1	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	9	5	10	6	42	29	42	29	10	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725426742	12	79083072	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	79083072	79083079	1	21	426.145	-	-	6	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	6	2	9	8	21	26	21	28	9	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725427320	12	81086785	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	81086785	81086793	1	15	320.06	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	2	6	6	37	37	37	37	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725428243	12	83931237	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	83931237	83931244	1	24	479.488	-	-	6	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	2	7	2	8	21	29	21	30	2	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725429026	12	86560445	CA	C	360	PASS	-	-	-	-	-	Del	-	D	86560445	86560455	1	12	323.672	-	-	9	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	1	5	1	7	21	36	21	36	1	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725429268	12	87413738	TA	T	329	PASS	-	-	-	-	-	Del	-	D	87413738	87413747	1	15	323.673	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	6	5	23	27	23	27	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725429665	12	88687799	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	88687799	88687808	1	20	373.404	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	4	3	4	6	34	36	35	37	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725431066	12	92884489	TAA	T	660	PASS	-	-	-	-	-	Del	-	D	92884489	92884494	2	30	593.4	-	-	4	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	2	9	5	12	17	31	17	31	5	12	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725433781	12	98882258	A	AT	420	PASS	AC013418.3	ENST00000501499	r.?	-	-	Ins	intronic	I	98882258	98882266	1	20	373.404	-	-	7	1	1	AC013418.3|ENST00000501499|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC013418.3|ENST00000501499|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	4	3	5	8	20	35	20	35	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725434826	12	102105301	A	AG	720	PASS	CHPT1	CCDS9086.1	r.?	-	-	Ins	intronic	I	102105301	102105306	1	40	638.314	-	-	4	1	1	CHPT1|CCDS9086.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHPT1|CCDS9086.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	9	5	9	39	52	39	53	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725435159	12	103039016	AT	A	269	PASS	-	-	-	-	-	Del	-	D	103039016	103039025	1	6	269.727	-	-	8	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	5	0	5	0	26	26	26	26	5	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725436862	12	107919185	C	CT	449	PASS	BTBD11	CCDS31893.1	r.?	-	-	Ins	intronic	I	107919185	107919192	1	24	424.941	-	-	6	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	5	3	5	5	20	16	20	16	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725441850	12	119965648	A	AT	434	PASS	CCDC60	CCDS9190.1	r.?	-	-	Ins	intronic	I	119965648	119965658	1	16	424.941	-	-	9	1	1	CCDC60|CCDS9190.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC60|CCDS9190.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	15	11	0	0	./.	7	1	11	4	42	20	42	20	11	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725445282	12	126699326	CG	C	300	PASS	-	-	-	-	-	Del	-	D	126699326	126699329	1	12	269.727	-	-	2	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	3	2	4	3	36	17	36	17	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725445284	12	126704911	C	CT	389	PASS	-	-	-	-	-	Ins	-	I	126704911	126704921	1	14	372.199	-	-	9	1	1	-	-	./.	0	0	0	0	28	15	28	15	0	0	./.	6	1	7	1	27	20	27	20	7	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725446645	12	129810774	C	CT	420	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Ins	intronic	I	129810774	129810781	1	20	373.404	-	-	6	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	15	17	0	0	./.	4	3	4	5	24	29	24	32	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725447017	12	130659094	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	130659094	130659102	1	40	640.12	-	-	7	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	9	3	13	7	27	21	27	22	13	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725450247	13	22765009	C	CT	540	PASS	AL137248.1	ENST00000413646	r.?	-	-	Ins	intronic	I	22765009	22765017	1	30	478.749	-	-	7	1	1	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	4	7	8	26	32	27	32	7	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725450460	13	23336265	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	23336265	23336275	1	12	267.644	-	-	9	1	1	-	-	./.	0	0	0	0	26	14	26	14	0	0	./.	3	2	4	5	21	20	21	20	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725451073	13	24628950	GA	G	360	PASS	-	-	-	-	-	Del	-	D	24628950	24628956	1	15	324.785	-	-	5	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	2	4	4	6	20	17	20	17	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725451320	13	25127739	T	TC	370	PASS	-	-	-	-	-	Ins	-	I	25127739	25127740	1	18	365.069	-	-	0	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	2	5	2	7	15	22	16	22	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725451868	13	26486827	A	AT	660	PASS	ATP8A2	CCDS41873.1	r.?	-	-	Ins	intronic	I	26486827	26486836	1	42	588.817	-	-	8	1	1	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP8A2|CCDS41873.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	17	20	17	0	0	./.	5	6	5	6	21	20	21	20	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725452663	13	28362473	T	TA	360	PASS	GSX1	CCDS9326.1	r.?	-	-	Ins	upstream	I	28362473	28362482	1	16	321.173	-	-	8	1	1	GSX1|CCDS9326.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	GSX1|CCDS9326.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	15	22	15	22	0	0	./.	3	3	5	3	22	24	22	25	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725453208	13	29694718	G	GA	360	PASS	MTUS2	CCDS45022.1	r.?	-	-	Ins	intronic	I	29694718	29694725	1	15	320.571	-	-	6	1	1	MTUS2|CCDS45022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTUS2|CCDS45022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	4	2	5	3	29	14	29	14	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725457070	13	40365820	A	AT	780	PASS	COG6	CCDS45042.1	r.?	-	-	Ins	downstream	I	40365820	40365827	1	50	695.273	-	-	6	1	1	COG6|CCDS45042.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	COG6|CCDS45042.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	21	15	22	15	0	0	./.	9	4	11	6	31	26	31	26	11	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725458232	13	43560065	CA	C	569	PASS	EPSTI1	CCDS9387.1	r.?	-	-	Del	intronic	D	43560065	43560069	1	36	533.482	-	-	3	1	1	EPSTI1|CCDS9387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPSTI1|CCDS9387.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	5	5	7	7	16	15	16	15	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725460482	13	50228944	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	50228944	50228953	1	12	267.644	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	4	4	19	22	19	22	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725461599	13	53733064	TC	T	300	PASS	-	-	-	-	-	Del	-	D	53733064	53733068	1	12	253.797	-	-	3	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	5	4	11	16	11	16	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725464357	13	62288288	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	62288288	62288289	1	16	321.173	-	-	0	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	3	3	6	4	20	18	20	18	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725465666	13	65631426	C	CCA	360	PASS	-	-	-	-	-	Ins	-	I	65631426	65631443	2	7	313.948	-	-	8	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	6	0	8	1	35	21	35	21	8	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725466591	13	69041079	G	GTT	360	PASS	-	-	-	-	-	Ins	-	I	69041079	69041082	2	15	317.561	-	-	2	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	4	5	4	19	17	20	17	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725466920	13	69853346	GAA	G	420	PASS	-	-	-	-	-	Del	-	D	69853346	69853351	2	20	378.916	-	-	4	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	3	4	8	6	26	22	26	22	8	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725467456	13	70973548	GC	G	660	PASS	-	-	-	-	-	Del	-	D	70973548	70973551	1	40	595.44	-	-	2	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	4	7	7	7	24	35	24	35	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725468583	13	74132062	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	74132062	74132070	1	12	321.173	-	-	7	1	1	-	-	./.	0	0	0	0	17	25	17	25	0	0	./.	1	5	2	6	21	20	21	20	2	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725469029	13	75265255	GAT	G	540	PASS	-	-	-	-	-	Del	-	D	75265255	75265260	2	28	487.178	-	-	2	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	3	6	6	7	21	30	21	30	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725469036	13	75294668	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	75294668	75294676	1	16	315.152	-	-	7	1	1	-	-	./.	0	0	0	0	23	7	23	7	0	0	./.	3	3	3	4	18	15	18	15	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725469454	13	76468712	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	76468712	76468722	1	10	264.634	-	-	9	1	1	-	-	./.	0	0	0	0	26	13	26	15	0	0	./.	4	1	6	6	28	18	28	18	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725469706	13	77242365	TAC	T	329	PASS	-	-	-	-	-	Del	-	D	77242365	77242368	2	15	322.377	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	4	2	4	2	21	12	21	12	4	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725470226	13	78845103	GTTTA	G	418	PASS	-	-	-	-	-	Del	-	D	78845103	78845111	4	24	431.843	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	5	3	8	16	20	16	20	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725472942	13	87172573	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	87172573	87172582	1	12	266.44	-	-	8	1	1	-	-	./.	0	0	0	0	13	25	13	25	0	0	./.	2	3	7	4	29	27	29	27	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725472974	13	87293523	AAAGT	A	387	PASS	-	-	-	-	-	Del	-	D	87293523	87293528	4	24	431.241	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	3	5	7	7	32	21	32	21	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725473729	13	89912506	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	89912506	89912514	1	42	587.011	-	-	7	1	1	-	-	./.	0	0	0	0	31	26	31	26	0	0	./.	5	6	5	7	28	33	28	34	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725476523	13	97582598	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	97582598	97582607	1	9	425.22	-	-	8	1	1	-	-	./.	0	0	0	0	18	28	18	28	0	0	./.	0	8	1	9	20	29	20	30	1	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725478849	13	103812503	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	103812503	103812513	1	30	477.545	-	-	9	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	5	4	6	5	23	26	23	26	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725481649	13	112117799	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	112117799	112117808	1	20	529.87	-	-	8	1	1	-	-	./.	0	0	0	0	24	22	26	22	0	0	./.	9	1	14	5	31	11	32	11	14	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725481680	13	112225116	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	112225116	112225125	1	12	267.644	-	-	8	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	2	3	3	21	13	21	13	3	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725483153	14	20510674	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	20510674	20510683	1	12	267.627	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	14	16	0	0	./.	2	3	4	3	27	28	27	28	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725483927	14	22169167	TA	T	660	PASS	-	-	-	-	-	Del	-	D	22169167	22169176	1	42	594.8	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	5	6	6	13	25	46	25	46	6	13	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725484688	14	23736188	G	GT	600	PASS	C14orf164	ENST00000399910	r.?	-	-	Ins	intronic	I	23736188	23736196	1	32	534.652	-	-	7	1	1	C14orf164|ENST00000399910|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C14orf164|ENST00000399910|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	26	12	27	0	0	./.	3	7	4	10	14	39	14	39	4	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725486411	14	28642246	G	GA	346	PASS	-	-	-	-	-	Ins	-	I	28642246	28642255	1	16	321.152	-	-	8	1	1	-	-	./.	0	0	0	0	18	19	19	19	0	0	./.	3	3	6	7	44	30	44	30	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725487083	14	30606228	G	GA	749	PASS	-	-	-	-	-	Ins	-	I	30606228	30606238	1	56	692.218	-	-	9	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	7	6	13	10	37	27	37	28	13	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725491055	14	40311059	T	TC	1260	PASS	-	-	-	-	-	Ins	-	I	40311059	40311066	1	132	1124.03	-	-	6	1	1	-	-	./.	0	0	0	0	14	23	15	23	0	0	./.	11	10	14	10	27	28	28	28	14	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725494048	14	48559741	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	48559741	48559748	1	18	374.678	-	-	6	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	5	2	5	5	29	26	30	26	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725499609	14	63305090	A	AATCTCTAAC	319	PASS	KCNH5	CCDS9756.1	r.?	-	-	Ins	intronic	I	63305090	63305100	9	42	535.798	-	-	1	1	1	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	5	6	3	7	45	27	47	28	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725499695	14	63615018	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	63615018	63615026	1	15	321.152	-	-	7	1	-	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	2	8	3	29	31	30	31	8	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725503430	14	73578580	G	GA	660	PASS	RBM25	CCDS32113.1	r.?	-	-	Ins	intronic	I	73578580	73578590	1	42	587.575	-	-	9	1	1	RBM25|CCDS32113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM25|CCDS32113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	5	6	8	8	42	32	43	33	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725505382	14	77587949	C	CA	780	PASS	KIAA1737	CCDS9855.1	r.?	-	-	Ins	downstream	I	77587949	77587951	1	54	694.626	-	-	1	1	1	KIAA1737|CCDS9855.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KIAA1737|CCDS9855.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	12	14	12	0	0	./.	8	5	10	7	28	14	28	14	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725507991	14	84877506	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	84877506	84877515	1	21	427.601	-	-	8	1	1	-	-	./.	0	0	0	0	26	15	26	15	0	0	./.	6	2	7	4	23	24	23	24	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725508484	14	86152640	C	CA	718	PASS	-	-	-	-	-	Ins	-	I	86152640	86152645	1	56	694.024	-	-	4	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	7	8	8	26	27	26	28	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725508581	14	86387349	ACTCTT	A	476	PASS	-	-	-	-	-	Del	-	D	86387349	86387363	5	32	541.274	-	-	2	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	3	7	3	8	18	27	18	27	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725510986	14	92354642	C	CA	360	PASS	FBLN5	CCDS9898.1	r.?	-	-	Ins	intronic	I	92354642	92354652	1	16	318.744	-	-	9	1	1	FBLN5|CCDS9898.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBLN5|CCDS9898.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	22	22	23	0	0	./.	3	3	3	4	28	29	29	29	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725512236	14	95431354	TG	T	540	PASS	-	-	-	-	-	Del	-	D	95431354	95431359	1	28	487.147	-	-	4	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	3	6	8	12	21	12	21	6	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725513881	14	100512051	G	GT	420	PASS	EVL	ENST00000402714	r.?	-	-	Ins	intronic	I	100512051	100512059	1	20	368.657	-	-	7	1	1	EVL|ENST00000402714|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EVL|ENST00000402714|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	8	8	22	25	23	25	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725515373	14	104888304	T	TC	358	PASS	-	-	-	-	-	Ins	-	I	104888304	104888310	1	20	370.463	-	-	5	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	3	4	5	7	14	21	14	21	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725520662	15	31613116	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	31613116	31613126	1	18	374.694	-	-	9	1	1	-	-	./.	0	0	0	0	28	21	29	21	0	0	./.	5	2	9	4	24	22	25	22	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725525165	15	43950925	ATGC	A	685	PASS	CKMT1A	CCDS32217.1	r.?	-	-	Del	intronic	D	43950925	43950930	3	63	754.807	-	-	1	1	1	CKMT1A|CCDS32217.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CKMT1A|CCDS32217.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	8	6	10	6	19	11	19	11	10	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725528773	15	55193609	CAT	C	389	PASS	-	-	-	-	-	Del	-	D	55193609	55193615	2	20	379.511	-	-	2	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	4	5	4	17	13	17	13	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725538003	15	80932927	TG	T	929	PASS	-	-	-	-	-	Del	-	D	80932927	80932932	1	72	866.249	-	-	4	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	5	11	7	11	23	24	23	24	7	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725538384	15	82227553	AT	A	480	PASS	-	-	-	-	-	Del	-	D	82227553	82227562	1	25	432.522	-	-	8	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	4	4	5	6	25	33	25	33	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725540067	15	87802626	C	CT	472	PASS	-	-	-	-	-	Ins	-	I	87802626	87802634	1	30	481.32	-	-	7	1	1	-	-	./.	0	0	0	0	21	17	22	17	0	0	./.	4	5	8	5	31	27	33	29	8	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725540295	15	88960385	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	88960385	88960393	1	40	643.365	-	-	7	1	1	-	-	./.	0	0	0	0	18	14	18	15	0	0	./.	9	3	11	4	46	23	46	23	11	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725542889	15	96348311	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	96348311	96348320	1	42	587.945	-	-	8	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	6	5	10	7	43	34	44	34	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725544685	15	101518295	T	TA	300	PASS	LRRK1	CCDS42086.1	r.?	-	-	Ins	intronic	I	101518295	101518305	1	12	262.65	-	-	9	1	1	LRRK1|CCDS42086.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRK1|CCDS42086.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	16	25	16	0	0	./.	2	3	0	1	28	30	28	30	2	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725545925	16	2066162	G	GT	540	PASS	NPW	CCDS42102.1	r.?	-	-	Ins	upstream	I	2066162	2066171	1	28	475.305	-	-	8	1	1	NPW|CCDS42102.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	NPW|CCDS42102.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	15	14	17	14	0	0	./.	6	3	7	7	47	35	48	35	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725547837	16	5501289	G	GATAGA	329	PASS	-	-	-	-	-	Ins	-	I	5501289	5501296	5	16	306.836	-	-	1	1	1	-	-	./.	0	0	0	0	13	15	13	16	0	0	./.	3	3	3	4	38	28	38	28	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725548240	16	6383042	C	CT	509	PASS	-	-	-	-	-	Ins	-	I	6383042	6383052	1	30	481.928	-	-	9	1	1	-	-	./.	0	0	0	0	30	25	30	25	0	0	./.	4	5	6	7	27	44	28	45	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725548472	16	6812340	GC	G	480	PASS	-	-	-	-	-	Del	-	D	6812340	6812342	1	24	433.197	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	3	5	5	6	24	44	24	44	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725554021	16	17854164	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	17854164	17854172	1	14	371.823	-	-	7	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	1	6	1	7	16	27	17	27	1	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725555084	16	20328532	CA	C	360	PASS	GP2	CCDS42128.1	r.1575+2delu	c.1425+2delt	p.?	Del	ess splice	D	20328532	20328534	1	15	324.898	-	-	1	1	1	GP2|CCDS42128.1|r.1575+2delu|c.1425+2delt|p.?|protein_coding:CDS:extended_cis_splice_site:deletion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000159:SO:CGPX03:SO:0001576	GP2|CCDS42128.1|r.1575+2delu|c.1425+2delt|p.?|protein_coding:CDS:extended_cis_splice_site:deletion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000159:SO:CGPX03:SO:0001576	./.	0	0	0	0	22	9	22	9	0	0	./.	2	4	2	5	19	19	19	19	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725555229	16	20822820	A	AT	540	PASS	ENSG00000005189	CCDS10591.1	r.?	-	-	Ins	intronic	I	20822820	20822829	1	28	474.101	-	-	8	1	1	ENSG00000005189|CCDS10591.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000005189|CCDS10591.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	17	0	0	./.	3	6	6	8	30	24	30	24	6	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725555897	16	22742717	C	CCCA	714	PASS	ENSG00000224154	ENST00000430965	r.?	-	-	Ins	intronic	I	22742717	22742724	3	72	783.948	-	-	2	1	1	ENSG00000224154|ENST00000430965|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000224154|ENST00000430965|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	12	0	0	./.	8	7	11	9	42	35	42	35	11	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725556242	16	23641218	GT	G	300	PASS	PALB2	CCDS32406.1	r.2456delA	c.2256delA	p.R753fs*11	Del	frameshift	D	23641218	23641220	1	12	270.748	-	-	1	1	1	PALB2|CCDS32406.1|r.2456delA|c.2256delA|p.R753fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PALB2|CCDS32406.1|r.2456delA|c.2256delA|p.R753fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	18	9	18	9	0	0	./.	3	2	7	2	31	30	31	30	7	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725558885	16	29865888	C	CA	718	PASS	CDIPT	CCDS10657.1	r.?	-	-	Ins	downstream	I	29865888	29865896	1	54	695.516	-	-	7	1	1	CDIPT|CCDS10657.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CDIPT|CCDS10657.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	18	12	19	0	0	./.	5	8	9	9	28	25	28	26	9	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725563189	16	51268938	CTTCTTAACACAAATGTTT	C	319	PASS	-	-	-	-	-	Del	-	D	51268938	51268958	18	40	595.646	-	-	1	1	1	-	-	./.	0	0	0	0	23	10	23	10	0	0	./.	7	4	6	4	12	7	13	7	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725567337	16	67130225	AT	A	449	PASS	CBFB	CCDS10827.1	r.?	-	-	Del	intronic	D	67130225	67130227	1	21	432.595	-	-	1	1	1	CBFB|CCDS10827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CBFB|CCDS10827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	2	6	2	17	8	17	8	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725570361	16	78218541	AT	A	600	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78218541	78218544	1	36	541.496	-	-	2	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	5	5	8	5	14	12	14	12	8	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725572371	16	85139246	TA	T	569	PASS	FAM92B	CCDS32500.1	r.?	-	-	Del	intronic	D	85139246	85139248	1	32	541.496	-	-	1	1	1	FAM92B|CCDS32500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM92B|CCDS32500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	7	3	9	4	15	10	15	10	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725580800	17	21718568	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	21718568	21718577	1	24	428.342	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	3	6	4	19	15	19	15	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725584613	17	33808848	TTTTG	T	480	PASS	SLFN12L	CCDS45649.1	r.?	-	-	Del	intronic	D	33808848	33808864	4	24	431.955	-	-	3	1	-	SLFN12L|CCDS45649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLFN12L|CCDS45649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	28	21	28	0	0	./.	3	5	5	6	28	27	28	27	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725585257	17	35634933	A	AT	900	PASS	ACACA	CCDS11317.1	r.?	-	-	Ins	intronic	I	35634933	35634943	1	72	785.08	-	-	9	1	1	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	8	7	8	8	34	31	34	31	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725585261	17	35642050	G	GA	360	PASS	ACACA	CCDS11317.1	r.?	-	-	Ins	intronic	I	35642050	35642059	1	16	321.257	-	-	8	1	1	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	3	3	7	6	30	35	30	35	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725591977	17	50696403	GT	G	420	PASS	-	-	-	-	-	Del	-	D	50696403	50696413	1	18	378.412	-	-	9	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	2	5	5	6	30	30	30	30	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725592138	17	50994889	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	50994889	50994896	1	12	321.257	-	-	6	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	5	1	8	2	33	23	33	23	8	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725592209	17	51176911	GT	G	1140	PASS	-	-	-	-	-	Del	-	D	51176911	51176915	1	104	1026.95	-	-	3	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	7	12	8	13	22	28	22	28	8	13	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725594674	17	57961296	TC	T	449	PASS	TUBD1	CCDS11620.1	r.?	-	-	Del	intronic	D	57961296	57961299	1	16	433.159	-	-	2	1	1	TUBD1|CCDS11620.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TUBD1|CCDS11620.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	7	1	9	2	41	11	41	11	9	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725596144	17	61520335	GA	G	360	PASS	CYB561	CCDS11636.1	r.?	-	-	Del	intronic	D	61520335	61520338	1	15	324.267	-	-	2	1	1	CYB561|CCDS11636.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CYB561|CCDS11636.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	2	4	5	5	18	16	18	16	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725598180	17	65947308	CCT	C	300	PASS	BPTF	CCDS11673.1	r.?	-	-	Del	intronic	D	65947308	65947325	2	12	270.724	-	-	8	1	1	BPTF|CCDS11673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BPTF|CCDS11673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	3	2	20	20	20	20	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725599853	17	70126789	G	GA	300	PASS	SOX9	CCDS11689.1	r.?	-	-	Ins	downstream	I	70126789	70126799	1	12	267.714	-	-	9	1	1	SOX9|CCDS11689.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SOX9|CCDS11689.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	24	13	24	0	0	./.	3	2	6	4	15	28	15	28	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725600631	17	71952453	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	71952453	71952455	1	28	481.885	-	-	1	1	1	-	-	./.	0	0	0	0	18	19	18	20	0	0	./.	3	6	6	7	25	22	25	22	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725601971	17	74546047	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	74546047	74546056	1	21	425.934	-	-	8	1	-	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	6	2	12	10	30	27	31	27	12	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725607361	18	8235585	A	AT	660	PASS	PTPRM	CCDS11840.1	r.?	-	-	Ins	intronic	I	8235585	8235595	1	42	585.661	-	-	9	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	25	28	26	0	0	./.	6	5	8	8	26	31	26	31	8	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725609840	18	18713851	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	18713851	18713859	1	28	482.133	-	-	7	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	6	3	9	3	30	20	31	21	9	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725612611	18	26336553	GA	G	780	PASS	-	-	-	-	-	Del	-	D	26336553	26336560	1	56	698.22	-	-	6	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	7	6	9	9	22	24	22	24	9	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725616590	18	39516221	TC	T	540	PASS	-	-	-	-	-	Del	-	D	39516221	39516224	1	30	486.949	-	-	2	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	5	4	7	21	22	21	22	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725617511	18	42485836	ACTC	A	418	PASS	SETBP1	CCDS11923.2	r.?	-	-	Del	intronic	D	42485836	42485840	3	24	432.175	-	-	1	1	1	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	5	4	7	18	33	18	33	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725617884	18	43688505	ATTC	A	269	PASS	ATP5A1	CCDS11927.1	r.?	-	-	Del	upstream	D	43688505	43688517	3	6	270.862	-	-	3	1	1	ATP5A1|CCDS11927.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HAUS1|CCDS11928.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	0	5	1	5	17	21	17	21	1	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725619889	18	49289043	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	49289043	49289050	1	18	374.992	-	-	6	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	2	5	2	9	23	43	23	43	2	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725619893	18	49325977	A	AT	1109	PASS	-	-	-	-	-	Ins	-	I	49325977	49325984	1	68	1005.79	-	-	6	1	1	-	-	./.	0	0	0	0	27	18	27	19	0	0	./.	3	16	7	22	37	45	37	45	7	22	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725620502	18	51044986	A	AT	480	PASS	DCC	CCDS11952.1	r.?	-	-	Ins	intronic	I	51044986	51044992	1	16	428.563	-	-	5	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	7	1	7	1	29	15	29	15	7	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725622490	18	55895474	G	GAC	509	PASS	NEDD4L	CCDS45872.1	r.?	-	-	Ins	intronic	I	55895474	55895480	2	28	476.112	-	-	2	1	1	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	3	6	3	6	21	34	21	34	3	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725622893	18	56834657	T	TA	1080	PASS	-	-	-	-	-	Ins	-	I	56834657	56834665	1	84	963.062	-	-	7	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	13	5	16	9	43	36	43	36	16	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725622896	18	56837963	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	56837963	56837973	1	20	372.584	-	-	9	1	-	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	4	3	5	3	48	15	48	15	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725623971	18	59520236	T	TA	420	PASS	RNF152	CCDS11978.1	r.?	-	-	Ins	intronic	I	59520236	59520242	1	18	374.992	-	-	5	1	1	RNF152|CCDS11978.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RNF152|CCDS11978.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	2	5	3	7	41	33	41	34	3	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725625427	18	63052815	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	63052815	63052823	1	21	428.563	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	13	12	0	0	./.	2	6	3	7	27	28	27	29	3	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725625501	18	63213043	C	CAGAA	418	PASS	-	-	-	-	-	Ins	-	I	63213043	63213048	4	24	412.307	-	-	1	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	3	5	4	5	36	42	36	42	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725625638	18	63518500	TAC	T	300	PASS	CDH7	CCDS11993.1	r.?	-	-	Del	intronic	D	63518500	63518518	2	12	270.26	-	-	8	1	1	CDH7|CCDS11993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH7|CCDS11993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	2	3	2	44	20	44	20	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725628076	18	68991397	GT	G	869	PASS	-	-	-	-	-	Del	-	D	68991397	68991402	1	72	812.586	-	-	4	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	8	7	14	8	36	34	36	34	14	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725630722	18	75473175	TG	T	660	PASS	-	-	-	-	-	Del	-	D	75473175	75473180	1	40	595.896	-	-	4	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	7	4	9	5	34	17	34	17	9	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725630746	18	75608221	TA	T	360	PASS	-	-	-	-	-	Del	-	D	75608221	75608227	1	16	325.034	-	-	5	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	3	3	4	8	35	32	35	32	4	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725641980	19	22919870	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	22919870	22919873	1	12	268.206	-	-	2	1	1	-	-	./.	0	0	0	0	21	29	21	30	0	0	./.	2	3	9	17	19	28	19	28	9	17	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725642687	19	24342224	G	GT	840	PASS	-	-	-	-	-	Ins	-	I	24342224	24342231	1	63	748.57	-	-	6	1	1	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	8	6	10	7	24	22	24	22	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725643129	19	28582052	C	CA	368	PASS	-	-	-	-	-	Ins	-	I	28582052	28582060	1	20	375.489	-	-	7	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	4	4	4	20	28	20	28	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725643496	19	29565202	CT	C	329	PASS	-	-	-	-	-	Del	-	D	29565202	29565212	1	15	323.052	-	-	9	1	-	-	-	./.	0	0	0	0	26	24	26	24	0	0	./.	2	4	5	7	18	18	18	18	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725646747	19	38837970	AT	A	329	PASS	CATSPERG	CCDS12514.2	r.?	-	-	Del	intronic	D	38837970	38837973	1	12	324.256	-	-	2	1	1	CATSPERG|CCDS12514.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CATSPERG|CCDS12514.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	1	8	3	27	13	27	13	8	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725647612	19	41041543	AATT	A	790	PASS	SPTBN4	CCDS12559.1	r.?	-	-	Del	intronic	D	41041543	41041551	3	72	854.046	-	-	2	1	1	SPTBN4|CCDS12559.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPTBN4|CCDS12559.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	11	5	12	7	22	15	22	16	12	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725656031	2	1948588	T	TA	600	PASS	MYT1L	CCDS46222.1	r.?	-	-	Ins	intronic	I	1948588	1948590	1	35	531.599	-	-	1	1	1	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	4	6	7	17	17	17	17	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725658312	2	9796474	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	9796474	9796483	1	15	316.551	-	-	8	1	-	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	2	4	6	5	24	19	24	19	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725659297	2	12194800	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	12194800	12194809	1	30	476.633	-	-	8	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	8	5	24	19	24	19	8	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725659840	2	14197041	GA	G	360	PASS	-	-	-	-	-	Del	-	D	14197041	14197050	1	15	322.572	-	-	8	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	4	2	5	4	28	13	28	13	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725660678	2	16955346	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	16955346	16955354	1	12	318.96	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	1	9	3	27	19	27	20	9	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725663814	2	27149152	CT	C	480	PASS	DPYSL5	CCDS1730.1	r.?	-	-	Del	intronic	D	27149152	27149155	1	24	430.096	-	-	2	1	1	DPYSL5|CCDS1730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYSL5|CCDS1730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	3	7	5	21	13	21	13	7	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725664894	2	30017683	CATAACAGAT	C	290	PASS	ALK	CCDS33172.1	r.?	-	-	Del	intronic	D	30017683	30017696	9	35	537.62	-	-	1	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	4	6	5	22	18	22	18	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725666237	2	33981139	GC	G	360	PASS	-	-	-	-	-	Del	-	D	33981139	33981142	1	12	322.572	-	-	2	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	5	1	6	2	21	9	21	9	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725667519	2	37430539	TTGAC	T	569	PASS	CEBPZ	CCDS1787.1	r.?	-	-	Del	intronic	D	37430539	37430547	4	20	537.62	-	-	1	1	1	CEBPZ|CCDS1787.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000218739|ENST00000402297|r.1814_1817delUGAC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	15	9	15	0	0	./.	1	9	3	11	16	21	16	21	3	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725668326	2	39272844	AT	A	269	PASS	SOS1	CCDS1802.1	r.?	-	-	Del	intronic	D	39272844	39272850	1	10	268.81	-	-	5	1	1	SOS1|CCDS1802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOS1|CCDS1802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	1	4	4	4	18	16	18	16	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725672572	2	52244957	TG	T	300	PASS	-	-	-	-	-	Del	-	D	52244957	52244961	1	12	268.81	-	-	3	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	3	7	14	20	14	20	3	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725675035	2	60856167	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	60856167	60856177	1	16	316.551	-	-	9	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	3	3	6	6	18	22	18	23	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725677720	2	69168419	C	CT	480	PASS	GKN2	CCDS33215.1	r.?	-	-	Ins	downstream	I	69168419	69168426	1	24	425.279	-	-	6	1	1	GKN2|CCDS33215.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GKN2|CCDS33215.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	23	12	23	0	0	./.	5	3	7	5	34	29	35	29	7	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725680424	2	77718082	A	AT	420	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Ins	intronic	I	77718082	77718092	1	14	371.518	-	-	9	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	19	25	19	0	0	./.	1	6	1	9	21	21	21	21	1	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725681206	2	80241477	GAC	G	269	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80241477	80241481	2	12	268.81	-	-	1	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	2	8	2	27	15	27	16	8	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725682443	2	84779191	AG	A	300	PASS	DNAH6	CCDS46348.1	r.?	-	-	Del	intronic	D	84779191	84779193	1	6	259.177	-	-	1	1	1	DNAH6|CCDS46348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH6|CCDS46348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	5	0	6	0	27	12	27	12	6	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725686475	2	99710385	C	CA	720	PASS	TSGA10	CCDS2037.1	r.?	-	-	Ins	intronic	I	99710385	99710392	1	48	635.511	-	-	6	1	1	TSGA10|CCDS2037.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSGA10|CCDS2037.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	29	18	29	0	0	./.	5	7	9	8	26	30	28	30	9	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725693864	2	124525626	TC	T	540	PASS	-	-	-	-	-	Del	-	D	124525626	124525629	1	28	483.858	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	6	4	11	20	35	20	35	4	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725697422	2	133973840	A	AT	540	PASS	NCKAP5	CCDS46418.1	r.?	-	-	Ins	intronic	I	133973840	133973850	1	30	473.623	-	-	9	1	1	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCKAP5|CCDS46418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	4	5	5	9	30	30	32	30	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725698194	2	137204994	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	137204994	137205003	1	15	318.96	-	-	8	1	1	-	-	./.	0	0	0	0	22	25	22	25	0	0	./.	4	2	6	2	19	21	20	22	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725700795	2	145534199	AT	A	780	PASS	-	-	-	-	-	Del	-	D	145534199	145534203	1	56	695.294	-	-	3	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	6	7	6	7	22	22	22	22	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725701373	2	147544441	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	147544441	147544451	1	20	364.895	-	-	9	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	4	3	5	4	26	21	26	21	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725703160	2	153390155	G	GA	300	PASS	FMNL2	CCDS46429.1	r.?	-	-	Ins	intronic	I	153390155	153390165	1	10	265.8	-	-	9	1	1	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	4	1	4	1	36	27	36	27	4	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725703839	2	155356241	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	155356241	155356251	1	28	478.439	-	-	9	1	1	-	-	./.	0	0	0	0	26	17	26	18	0	0	./.	3	6	5	8	17	31	17	31	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725705159	2	159799458	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	159799458	159799466	1	18	372.12	-	-	7	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	2	7	4	28	30	29	30	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725705770	2	161352882	AAATT	A	358	PASS	RBMS1	CCDS2213.1	r.?	-	-	Del	upstream	D	161352882	161352888	4	20	376.334	-	-	1	1	1	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RBMS1|CCDS2213.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	12	18	12	18	0	0	./.	4	3	6	4	26	20	26	20	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725710265	2	174871595	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	174871595	174871605	1	12	308.123	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	1	8	3	35	12	35	12	8	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725716443	2	195134861	GA	G	720	PASS	-	-	-	-	-	Del	-	D	195134861	195134865	1	49	639.123	-	-	3	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	6	6	7	10	20	29	20	29	7	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725717135	2	197172482	A	AT	600	PASS	HECW2	CCDS33354.1	r.?	-	-	Ins	intronic	I	197172482	197172492	1	32	531.599	-	-	9	1	1	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	7	3	8	4	24	23	25	23	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725718185	2	200474940	AGT	A	269	PASS	-	-	-	-	-	Del	-	D	200474940	200474945	2	10	263.993	-	-	2	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	1	5	3	17	13	17	13	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725719241	2	203333719	CT	C	300	PASS	BMPR2	CCDS33361.1	r.?	-	-	Del	intronic	D	203333719	203333729	1	12	267.004	-	-	9	1	-	BMPR2|CCDS33361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMPR2|CCDS33361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	2	3	27	24	27	24	2	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725719623	2	204324684	G	GT	1200	PASS	RAPH1	CCDS2359.1	r.1337_1338insa	c.1037_1038insA	p.N346fs*30	Ins	frameshift	I	204324684	204324689	1	120	1061.99	-	-	4	1	1	RAPH1|CCDS2359.1|r.1337_1338insa|c.1037_1038insA|p.N346fs*30|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	RAPH1|CCDS2359.1|r.1337_1338insa|c.1037_1038insA|p.N346fs*30|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	26	20	26	20	0	0	./.	9	11	17	15	27	21	27	22	17	15	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725720057	2	206027920	CT	C	300	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	206027920	206027924	1	6	268.81	-	-	3	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	0	5	1	10	10	33	10	33	1	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725721202	2	209255648	A	AT	420	PASS	PTH2R	ENST00000413482	r.?	-	-	Ins	intronic	I	209255648	209255655	1	20	372.12	-	-	6	1	1	PTH2R|ENST00000413482|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTH2R|ENST00000413482|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	19	18	0	0	./.	3	4	4	5	19	19	19	19	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725722513	2	213703192	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	213703192	213703202	1	15	318.96	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	3	4	19	24	19	24	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725729578	2	233934959	A	AT	389	PASS	INPP5D	ENST00000359570	r.?	-	-	Ins	intronic	I	233934959	233934969	1	18	372.12	-	-	9	1	1	INPP5D|ENST00000359570|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INPP5D|ENST00000359570|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	14	25	14	0	0	./.	5	2	8	3	21	27	21	27	8	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725730852	2	237993946	G	GA	420	PASS	COPS8	CCDS2517.1	r.?	-	-	Ins	upstream	I	237993946	237993956	1	20	370.915	-	-	9	1	1	COPS8|CCDS2517.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	COPS8|CCDS2517.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	11	14	11	14	0	0	./.	3	4	5	5	13	26	13	26	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725733058	20	1947877	T	TTA	360	PASS	-	-	-	-	-	Ins	-	I	1947877	1947880	2	15	318.432	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	4	2	5	2	23	23	23	23	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725737635	20	13620335	G	GT	360	PASS	TASP1	CCDS13116.1	r.?	-	-	Ins	upstream	I	13620335	13620343	1	15	320.238	-	-	7	1	1	TASP1|CCDS13116.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TASP1|CCDS13116.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	23	9	23	9	0	0	./.	2	4	3	8	17	27	18	27	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725738205	20	14968494	G	GAT	480	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	14968494	14968510	2	21	423.372	-	-	7	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	20	15	0	0	./.	6	2	6	2	30	40	31	40	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725738289	20	15136981	G	GA	480	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	15136981	15136990	1	24	429.392	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	15	28	15	0	0	./.	3	5	7	6	26	19	26	19	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725738418	20	15510556	AG	A	420	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	15510556	15510559	1	20	379.933	-	-	2	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	23	11	23	0	0	./.	4	3	5	6	31	17	31	17	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725740135	20	20253204	AC	A	360	PASS	C20orf26	CCDS33447.1	r.?	-	-	Del	intronic	D	20253204	20253210	1	16	324.452	-	-	5	1	1	C20orf26|CCDS33447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C20orf26|CCDS33447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	4	4	23	19	23	19	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725740664	20	22180771	G	GGGGA	495	PASS	-	-	-	-	-	Ins	-	I	22180771	22180780	4	30	465.004	-	-	2	1	1	-	-	./.	0	0	0	0	17	21	17	22	0	0	./.	5	4	5	5	31	30	31	30	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725744349	20	31400092	G	GTA	300	PASS	DNMT3B	CCDS13205.1	r.?	-	-	Ins	downstream	I	31400092	31400094	2	10	265.36	-	-	0	1	1	DNMT3B|CCDS13205.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DNMT3B|CCDS13205.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	18	7	19	7	0	0	./.	4	1	5	1	26	19	26	23	5	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725744691	20	32297377	TGAGAG	T	298	PASS	PXMP4	CCDS13225.1	r.?	-	-	Del	intronic	D	32297377	32297385	5	12	325.657	-	-	1	1	1	PXMP4|CCDS13225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PXMP4|CCDS13225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	5	2	5	14	27	14	27	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725745476	20	33786684	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	33786684	33786691	1	28	480.658	-	-	6	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	3	7	6	38	24	39	24	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725745597	20	34013305	TG	T	540	PASS	-	-	-	-	-	Del	-	D	34013305	34013308	1	30	488.485	-	-	2	1	1	-	-	./.	0	0	0	0	28	15	28	15	0	0	./.	5	4	6	5	25	27	25	27	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725746247	20	35554651	T	TA	420	PASS	SAMHD1	CCDS13288.1	r.?	-	-	Ins	intronic	I	35554651	35554660	1	20	372.106	-	-	8	1	1	SAMHD1|CCDS13288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SAMHD1|CCDS13288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	4	5	9	35	47	35	47	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725747126	20	38031821	T	TA	629	PASS	-	-	-	-	-	Ins	-	I	38031821	38031830	1	40	589.812	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	7	4	7	4	30	29	31	29	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725752933	20	52938975	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	52938975	52938985	1	6	268.37	-	-	9	1	1	-	-	./.	0	0	0	0	20	12	20	13	0	0	./.	5	0	5	0	55	34	55	34	5	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725753339	20	54135043	TG	T	749	PASS	-	-	-	-	-	Del	-	D	54135043	54135046	1	54	704.385	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	8	5	14	15	30	32	30	32	14	15	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725753667	20	54981430	A	AT	509	PASS	CSTF1	CCDS13452.1	r.?	-	-	Ins	downstream	I	54981430	54981439	1	18	478.852	-	-	8	1	1	CSTF1|CCDS13452.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CSTF1|CCDS13452.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	21	21	21	21	0	0	./.	1	8	3	14	29	50	29	50	3	14	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725755203	20	59578837	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	59578837	59578846	1	12	267.768	-	-	8	1	1	-	-	./.	0	0	0	0	18	28	18	28	0	0	./.	2	3	3	5	16	30	16	30	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725755235	20	59693342	TAC	T	420	PASS	-	-	-	-	-	Del	-	D	59693342	59693346	2	20	379.933	-	-	1	1	1	-	-	./.	0	0	0	0	27	18	27	18	0	0	./.	4	3	6	4	21	21	21	21	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725756047	20	62300868	AAAG	A	379	PASS	RTEL1	CCDS13531.1	r.?	-	-	Del	intronic	D	62300868	62300872	3	30	486.077	-	-	1	1	1	RTEL1|CCDS13531.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RTEL1|CCDS13531.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	5	4	7	5	42	31	42	32	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725761695	21	18666438	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	18666438	18666445	1	30	480.247	-	-	6	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	5	4	6	5	23	20	23	20	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725762850	21	21486688	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	21486688	21486695	1	20	376.335	-	-	6	1	1	-	-	./.	0	0	0	0	22	21	22	22	0	0	./.	4	3	9	7	29	20	30	20	9	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725765102	21	27177952	G	GT	329	PASS	AP001441.1	ENST00000509807	r.?	-	-	Ins	intronic	I	27177952	27177962	1	15	310.531	-	-	9	1	-	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AP001441.1|ENST00000509807|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	23	10	23	0	0	./.	2	4	5	10	23	44	23	44	5	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725769631	21	38966294	CT	C	360	PASS	-	-	-	-	-	Del	-	D	38966294	38966296	1	16	324.379	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	3	4	4	19	12	19	12	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725772210	21	46158021	TA	T	420	PASS	-	-	-	-	-	Del	-	D	46158021	46158024	1	20	380.549	-	-	2	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	3	5	4	22	14	22	14	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725774182	22	19530256	AT	A	600	PASS	AC000068.1	ENST00000514976	r.?	-	-	Del	intronic	D	19530256	19530259	1	36	545.767	-	-	2	1	1	AC000068.1|ENST00000514976|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC000068.1|ENST00000514976|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	5	7	6	19	13	19	13	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725775988	22	26177722	C	CGCGTG	718	PASS	MYO18B	ENST00000407587	r.2239_2240insgcgug	c.2239_2240insGCGTG	p.R750fs*29	Ins	frameshift	I	26177722	26177730	5	56	669.159	-	-	1	1	1	MYO18B|ENST00000407587|r.2239_2240insgcgug|c.2239_2240insGCGTG|p.R750fs*29|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MYO18B|ENST00000407587|r.2239_2240insgcgug|c.2239_2240insGCGTG|p.R750fs*29|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	20	20	20	21	0	0	./.	7	6	7	5	19	14	20	15	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725776773	22	29363476	AC	A	567	PASS	ZNRF3	CCDS42999.1	r.?	-	-	Del	intronic	D	29363476	29363479	1	30	600.343	-	-	2	1	1	ZNRF3|CCDS42999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNRF3|CCDS42999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	9	5	9	8	12	8	12	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725777818	22	32566869	TC	T	840	PASS	-	-	-	-	-	Del	-	D	32566869	32566871	1	55	764.073	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	10	5	13	11	14	11	14	5	13	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725779244	22	37424768	T	TA	420	PASS	MPST	CCDS13939.1	r.?	-	-	Ins	intronic	I	37424768	37424770	1	20	377.822	-	-	1	1	1	MPST|CCDS13939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MPST|CCDS13939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	18	0	0	./.	3	4	4	6	9	10	9	10	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725780471	22	41913526	CACAG	C	389	PASS	ACO2	CCDS14017.1	r.858-4_858-1delacag	c.836-4_836-1delacag	p.?	Del	ess splice	D	41913526	41913531	4	18	381.435	-	-	1	1	1	ACO2|CCDS14017.1|r.858-4_858-1delacag|c.836-4_836-1delacag|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	ACO2|CCDS14017.1|r.858-4_858-1delacag|c.836-4_836-1delacag|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	9	13	9	13	0	0	./.	5	2	8	2	16	6	16	6	8	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725782647	22	49233200	C	CACACAAGTGTCCTCACACAAGT	290	PASS	FAM19A5	ENST00000336769	r.?	-	-	Ins	intronic	I	49233200	49233206	22	32	407.293	-	-	0	1	-	FAM19A5|ENST00000336769|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A5|ENST00000336769|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	8	16	0	0	./.	3	7	0	0	40	51	45	54	3	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725790945	3	19406074	C	CA	697	PASS	KCNH8	CCDS2632.1	r.?	-	-	Ins	intronic	I	19406074	19406081	1	49	636.259	-	-	6	1	1	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH8|CCDS2632.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	6	6	7	8	33	44	33	44	7	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725792312	3	23530714	CTTTA	C	389	PASS	UBE2E2	CCDS2637.1	r.?	-	-	Del	intronic	D	23530714	23530724	4	20	376.771	-	-	2	1	1	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	4	6	10	21	10	21	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725793090	3	25640214	AAC	A	269	PASS	TOP2B	CCDS46776.1	r.?	-	-	Del	intronic	D	25640214	25640219	2	12	269.122	-	-	2	1	1	TOP2B|CCDS46776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOP2B|CCDS46776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	3	3	31	28	31	28	3	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725794070	3	28645606	CA	C	300	PASS	-	-	-	-	-	Del	-	D	28645606	28645616	1	12	268.52	-	-	9	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	3	2	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725794129	3	28803942	GA	G	780	PASS	-	-	-	-	-	Del	-	D	28803942	28803948	1	56	699.115	-	-	5	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	7	6	11	7	33	25	33	25	11	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725797313	3	38365505	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	38365505	38365515	1	10	265.509	-	-	9	1	1	-	-	./.	0	0	0	0	26	19	26	20	0	0	./.	4	1	6	2	29	25	29	25	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725798085	3	40984466	G	GT	989	PASS	-	-	-	-	-	Ins	-	I	40984466	40984474	1	48	901.769	-	-	7	1	1	-	-	./.	0	0	0	0	23	14	24	14	0	0	./.	15	2	18	8	49	22	50	22	19	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725799128	3	43819795	T	TAGAG	778	PASS	-	-	-	-	-	Ins	-	I	43819795	43819800	4	60	717.418	-	-	2	1	1	-	-	./.	0	0	0	0	15	13	16	13	0	0	./.	9	5	10	7	29	18	29	18	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725800175	3	47672710	AG	A	809	PASS	SMARCC1	CCDS2758.1	r.?	-	-	Del	intronic	D	47672710	47672716	1	63	746.919	-	-	5	1	1	SMARCC1|CCDS2758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCC1|CCDS2758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	20	22	20	0	0	./.	8	6	10	10	12	11	12	11	10	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725808125	3	76142066	TTGCATTC	TTCA	261	PASS	ROBO2	ENST00000487694	r.?	-	-	Complex	intronic	DI	76142067	76142073	7	28	0	-	-	0	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	6	3	0	0	21	10	21	10	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725808477	3	77573645	A	AATAATT	348	PASS	ROBO2	CCDS43109.1	r.?	-	-	Ins	intronic	I	77573645	77573647	6	40	602.544	-	-	0	1	1	ROBO2|CCDS43109.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO2|CCDS43109.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	12	23	12	0	0	./.	3	9	3	7	8	17	9	19	3	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725810438	3	85914241	C	CT	480	PASS	CADM2	CCDS33792.1	r.?	-	-	Ins	intronic	I	85914241	85914243	1	21	421.564	-	-	1	1	1	CADM2|CCDS33792.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CADM2|CCDS33792.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	2	6	2	9	6	17	6	17	2	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725811613	3	93918555	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	93918555	93918564	1	42	576.414	-	-	8	1	1	-	-	./.	0	0	0	0	20	17	21	17	0	0	./.	5	6	10	7	32	27	33	27	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725811924	3	94719334	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	94719334	94719341	1	12	263.703	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	13	0	0	./.	3	2	4	2	28	17	29	17	4	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725812938	3	97498404	G	GT	660	PASS	ARL6	CCDS2928.1	r.?	-	-	Ins	intronic	I	97498404	97498406	1	40	583.037	-	-	1	1	1	ARL6|CCDS2928.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARL6|CCDS2928.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	16	0	0	./.	4	7	5	7	31	28	31	28	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725813274	3	98335011	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	98335011	98335018	1	14	369.546	-	-	6	1	1	-	-	./.	0	0	0	0	16	16	16	17	0	0	./.	6	1	9	1	37	16	37	16	9	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725813990	3	100630340	C	CT	569	PASS	ABI3BP	CCDS46880.1	r.?	-	-	Ins	intronic	I	100630340	100630349	1	35	532.223	-	-	8	1	1	ABI3BP|CCDS46880.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABI3BP|CCDS46880.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	26	22	27	0	0	./.	6	4	7	3	33	26	33	26	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725814573	3	101799768	GT	G	480	PASS	-	-	-	-	-	Del	-	D	101799768	101799772	1	16	419.758	-	-	3	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	7	10	10	22	34	22	34	10	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725815666	3	104719186	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	104719186	104719194	1	20	372.556	-	-	7	1	1	-	-	./.	0	0	0	0	20	23	21	23	0	0	./.	3	4	4	5	21	32	21	32	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725816993	3	108547585	GAAC	G	1198	PASS	TRAT1	CCDS33813.1	r.?	-	-	Del	intronic	D	108547585	108547593	3	130	1129.71	-	-	2	1	1	TRAT1|CCDS33813.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAT1|CCDS33813.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	12	9	14	9	40	30	40	30	14	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725820224	3	117475072	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	117475072	117475074	1	12	266.112	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	5	2	30	22	30	22	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725821436	3	121077797	A	AT	840	PASS	STXBP5L	CCDS43137.1	r.?	-	-	Ins	intronic	I	121077797	121077806	1	60	745.112	-	-	8	1	1	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STXBP5L|CCDS43137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	9	5	11	6	44	39	44	39	11	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725822927	3	125056794	AT	A	300	PASS	ZNF148	CCDS3031.1	r.?	-	-	Del	intronic	D	125056794	125056803	1	12	268.52	-	-	8	1	1	ZNF148|CCDS3031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF148|CCDS3031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	4	3	24	35	24	35	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725824962	3	130900997	AG	A	300	PASS	NEK11	CCDS3069.1	r.?	-	-	Del	intronic	D	130900997	130900999	1	6	254.672	-	-	1	1	-	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK11|CCDS3069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	0	6	0	35	26	35	26	6	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725826126	3	134655413	GC	G	480	PASS	EPHB1	CCDS46921.1	r.?	-	-	Del	intronic	D	134655413	134655422	1	21	426.381	-	-	8	1	1	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	6	2	6	3	27	12	27	12	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725829377	3	144420874	G	GAT	600	PASS	-	-	-	-	-	Ins	-	I	144420874	144420888	2	35	526.203	-	-	6	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	4	6	4	7	22	38	22	38	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725830904	3	148940822	A	AT	1018	PASS	CP	CCDS3141.1	r.?	-	-	Ins	upstream	I	148940822	148940831	1	84	954.991	-	-	8	1	1	CP|CCDS3141.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CP|CCDS3141.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	20	21	20	21	0	0	./.	13	5	15	9	31	27	31	28	15	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725831010	3	149245436	A	AT	267	PASS	WWTR1	CCDS3144.1	r.?	-	-	Ins	intronic	I	149245436	149245443	1	12	318.732	-	-	6	1	1	WWTR1|CCDS3144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WWTR1|CCDS3144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	21	16	21	0	0	./.	1	5	2	8	13	27	13	27	2	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725831321	3	150102385	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	150102385	150102394	1	10	264.907	-	-	8	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	1	7	3	28	32	28	32	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725832745	3	153450795	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	153450795	153450804	1	20	372.556	-	-	8	1	1	-	-	./.	0	0	0	0	15	29	15	29	0	0	./.	3	4	4	5	21	28	22	29	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725834901	3	160240207	CT	C	509	PASS	KPNA4	CCDS3191.1	r.?	-	-	Del	intronic	D	160240207	160240212	1	30	482.011	-	-	4	1	1	KPNA4|CCDS3191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KPNA4|CCDS3191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	5	4	6	9	32	42	32	42	6	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725836546	3	164656965	TGTAA	T	780	PASS	-	-	-	-	-	Del	-	D	164656965	164656975	4	44	699.717	-	-	2	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	10	3	10	4	43	24	43	24	10	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725836997	3	165871701	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	165871701	165871706	1	28	479.001	-	-	4	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	6	4	7	20	42	20	42	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725838501	3	170341348	C	CA	360	PASS	CLDN11	ENST00000486975	r.?	-	-	Ins	intronic	I	170341348	170341358	1	15	319.334	-	-	9	1	1	CLDN11|ENST00000486975|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLDN11|ENST00000486975|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	11	0	0	./.	4	2	6	3	33	24	33	24	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725840409	3	175486689	AAAG	A	358	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Del	intronic	D	175486689	175486697	3	18	357.505	-	-	2	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	23	24	23	0	0	./.	2	5	3	5	26	18	26	18	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725842080	3	179649436	A	AT	300	PASS	PEX5L	CCDS3236.1	r.?	-	-	Ins	intronic	I	179649436	179649445	1	12	266.112	-	-	8	1	1	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	4	6	36	32	36	32	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725842287	3	180616070	A	AT	360	PASS	FXR1	ENST00000465551	r.?	-	-	Ins	intronic	I	180616070	180616079	1	15	319.334	-	-	8	1	1	FXR1|ENST00000465551|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FXR1|ENST00000465551|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	17	17	18	0	0	./.	2	4	3	4	23	27	23	27	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725842357	3	180741564	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	180741564	180741571	1	20	372.556	-	-	6	1	1	-	-	./.	0	0	0	0	16	25	16	26	0	0	./.	4	3	5	4	26	28	28	28	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725843926	3	184832490	G	GA	600	PASS	C3orf70	CCDS33900.1	r.?	-	-	Ins	intronic	I	184832490	184832497	1	20	532.223	-	-	6	1	1	C3orf70|CCDS33900.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C3orf70|CCDS33900.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	24	22	24	0	0	./.	9	1	10	3	31	34	31	34	10	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725844926	3	187095331	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	187095331	187095340	1	20	368.944	-	-	8	1	1	-	-	./.	0	0	0	0	11	31	11	31	0	0	./.	3	4	3	6	28	29	31	30	3	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725847116	3	192621267	GA	G	300	PASS	C3orf59	CCDS3302.2	r.?	-	-	Del	intronic	D	192621267	192621274	1	12	267.316	-	-	6	1	1	C3orf59|CCDS3302.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf59|CCDS3302.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	3	2	7	3	29	22	29	22	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725847169	3	192810210	AC	A	300	PASS	-	-	-	-	-	Del	-	D	192810210	192810217	1	10	269.122	-	-	6	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	4	1	4	2	20	14	20	14	4	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725849186	3	197124144	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	197124144	197124153	1	10	266.112	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	1	5	5	18	34	18	34	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725855988	4	17897904	CCT	C	300	PASS	LCORL	CCDS3425.1	r.?	-	-	Del	intronic	D	17897904	17897921	2	12	267.941	-	-	8	1	1	LCORL|CCDS3425.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LCORL|CCDS3425.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	3	2	3	2	44	28	44	28	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725856779	4	20858142	G	GT	600	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Ins	intronic	I	20858142	20858151	1	32	532.269	-	-	8	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	3	7	5	9	17	25	17	25	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725856923	4	21291634	C	CA	420	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Ins	intronic	I	21291634	21291644	1	18	370.18	-	-	9	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	14	28	14	0	0	./.	5	2	10	2	33	19	33	19	10	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725860596	4	32102638	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	32102638	32102644	1	30	479.042	-	-	5	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	4	9	8	12	20	12	20	9	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725861521	4	35180281	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	35180281	35180290	1	10	266.134	-	-	8	1	1	-	-	./.	0	0	0	0	17	25	17	25	0	0	./.	1	4	2	4	20	20	20	20	2	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725864920	4	43704813	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	43704813	43704823	1	20	370.782	-	-	9	1	1	-	-	./.	0	0	0	0	35	17	35	17	0	0	./.	3	4	6	7	23	29	23	30	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725865432	4	45553293	TA	T	540	PASS	-	-	-	-	-	Del	-	D	45553293	45553297	1	30	484.461	-	-	3	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	4	5	5	9	25	21	25	21	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725868163	4	55056606	C	CA	540	PASS	FIP1L1	ENST00000507166	r.?	-	-	Ins	intronic	I	55056606	55056616	1	30	479.042	-	-	9	1	1	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	5	4	6	6	24	27	24	27	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725868210	4	55211634	T	TA	569	PASS	-	-	-	-	-	Ins	-	I	55211634	55211643	1	36	531.065	-	-	8	1	1	-	-	./.	0	0	0	0	22	26	23	26	0	0	./.	5	5	6	8	22	29	23	29	7	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725869473	4	58618437	GAA	G	360	PASS	-	-	-	-	-	Del	-	D	58618437	58618440	2	16	322.372	-	-	2	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	3	3	6	6	15	28	15	28	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725870101	4	60559583	ATATT	A	540	PASS	-	-	-	-	-	Del	-	D	60559583	60559590	4	30	484.461	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	5	9	6	21	28	21	28	9	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725870474	4	61766699	AAAAT	A	1167	PASS	-	-	-	-	-	Del	-	D	61766699	61766705	4	130	1129.2	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	9	12	9	14	16	26	16	26	9	14	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725877181	4	82051808	TG	T	420	PASS	PRKG2	CCDS3589.1	r.?	-	-	Del	intronic	D	82051808	82051812	1	20	375.599	-	-	3	1	1	PRKG2|CCDS3589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG2|CCDS3589.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	3	5	7	14	21	14	21	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725877221	4	82221937	AT	A	509	PASS	-	-	-	-	-	Del	-	D	82221937	82221943	1	28	480.848	-	-	5	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	6	3	9	6	17	21	17	21	9	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725879523	4	88910984	TC	T	360	PASS	-	-	-	-	-	Del	-	D	88910984	88910990	1	7	322.974	-	-	5	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	0	6	0	7	15	20	15	20	0	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725881878	4	96785461	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	96785461	96785470	1	56	691.95	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	7	6	9	7	17	16	17	16	9	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725882178	4	98672284	TTAACAACACTTCTTCC	T	290	PASS	C4orf37	CCDS3645.1	r.?	-	-	Del	intronic	D	98672284	98672302	16	36	538.29	-	-	1	1	1	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf37|CCDS3645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	24	13	24	0	0	./.	5	5	5	5	20	26	20	26	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725882725	4	100014872	T	TA	396	PASS	ADH5	CCDS47111.1	r.?	-	-	Ins	upstream	I	100014872	100014880	1	14	368.976	-	-	7	1	1	ADH5|CCDS47111.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ADH5|CCDS47111.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	25	24	25	24	0	0	./.	1	6	2	8	18	25	18	25	2	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725882830	4	100199090	A	AT	300	PASS	ADH1A	CCDS3648.1	r.?	-	-	Ins	intronic	I	100199090	100199099	1	10	266.134	-	-	8	1	1	ADH1A|CCDS3648.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADH1A|CCDS3648.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	1	4	2	7	26	23	26	23	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725884722	4	106439999	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	106439999	106440007	1	12	266.134	-	-	7	1	1	-	-	./.	0	0	0	0	22	5	22	5	0	0	./.	3	2	5	4	29	10	29	10	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725885077	4	107732497	CTT	C	720	PASS	-	-	-	-	-	Del	-	D	107732497	107732500	2	45	644.743	-	-	2	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	8	4	9	4	22	16	22	16	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725886394	4	111925489	AT	A	540	PASS	-	-	-	-	-	Del	-	D	111925489	111925499	1	28	483.859	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	6	5	8	14	25	14	25	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725886494	4	112228511	TA	T	720	PASS	-	-	-	-	-	Del	-	D	112228511	112228520	1	48	645.947	-	-	8	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	5	7	8	11	16	19	16	19	8	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725887115	4	114149975	A	AT	329	PASS	ANK2	CCDS3702.1	r.?	-	-	Ins	intronic	I	114149975	114149985	1	12	319.361	-	-	9	1	1	ANK2|CCDS3702.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANK2|CCDS3702.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	21	17	21	0	0	./.	5	1	7	2	26	15	26	15	7	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725887715	4	116250489	GT	G	360	PASS	-	-	-	-	-	Del	-	D	116250489	116250494	1	15	322.974	-	-	4	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	2	4	2	5	16	23	16	23	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725888268	4	117963704	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	117963704	117963711	1	12	266.134	-	-	6	1	1	-	-	./.	0	0	0	0	18	25	19	25	0	0	./.	2	3	3	4	21	22	21	22	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725888627	4	119293333	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	119293333	119293343	1	12	266.134	-	-	9	1	1	-	-	./.	0	0	0	0	20	19	21	19	0	0	./.	2	3	4	8	25	32	25	32	4	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725890856	4	126060089	CT	C	720	PASS	-	-	-	-	-	Del	-	D	126060089	126060091	1	45	645.947	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	4	8	4	10	18	16	18	16	4	10	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725891429	4	127734871	CA	C	840	PASS	-	-	-	-	-	Del	-	D	127734871	127734875	1	60	753.003	-	-	3	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	5	9	6	11	20	39	20	39	6	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725892443	4	130950204	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	130950204	130950209	2	10	269.145	-	-	2	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	1	4	2	4	33	15	33	15	2	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725893646	4	134920684	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	134920684	134920688	1	18	372.588	-	-	3	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	5	2	6	3	22	19	22	19	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725894973	4	139455955	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	139455955	139455965	1	14	372.588	-	-	9	1	1	-	-	./.	0	0	0	0	19	24	20	24	0	0	./.	1	6	2	7	31	32	31	32	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725897281	4	147161993	CATT	C	329	PASS	-	-	-	-	-	Del	-	D	147161993	147162000	3	15	322.974	-	-	2	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	2	4	3	5	18	24	18	24	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725900765	4	157826975	G	GC	360	PASS	PDGFC	ENST00000502773	r.?	-	-	Ins	intronic	I	157826975	157826977	1	16	319.361	-	-	1	1	1	PDGFC|ENST00000502773|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDGFC|ENST00000502773|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	3	3	4	4	19	21	19	21	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725902632	4	163073909	GAACA	G	358	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	163073909	163073921	4	18	376.803	-	-	2	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	5	2	4	3	19	23	20	23	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725902896	4	163726256	TAAA	T	509	PASS	-	-	-	-	-	Del	-	D	163726256	163726261	3	28	484.461	-	-	4	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	3	7	5	20	25	20	25	7	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725903065	4	164248924	TCA	T	389	PASS	NPY1R	CCDS34089.1	r.?	-	-	Del	intronic	D	164248924	164248929	2	20	376.803	-	-	2	1	1	NPY1R|CCDS34089.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NPY1R|CCDS34089.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	26	12	26	0	0	./.	4	3	4	4	25	26	25	26	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725903613	4	165635226	G	GA	1080	PASS	-	-	-	-	-	Ins	-	I	165635226	165635235	1	84	957.482	-	-	8	1	1	-	-	./.	0	0	0	0	16	23	17	23	0	0	./.	5	13	7	18	24	35	24	35	7	18	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725904511	4	168110206	AAAG	A	689	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	168110206	168110213	3	48	642.335	-	-	2	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	25	13	25	0	0	./.	7	5	7	5	22	26	22	26	7	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725908695	4	180299631	A	AT	418	PASS	-	-	-	-	-	Ins	-	I	180299631	180299638	1	21	425.815	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	6	5	9	18	34	18	34	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725913864	4	190845878	T	TA	258	PASS	-	-	-	-	-	Ins	-	I	190845878	190845885	1	18	372.588	-	-	6	1	1	-	-	./.	0	0	0	0	43	25	43	26	0	0	./.	5	2	7	4	116	91	116	93	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725913865	4	190845906	TC	T	407	PASS	-	-	-	-	-	Del	-	D	190845906	190845908	1	40	590.914	-	-	1	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	7	4	9	4	73	75	73	76	9	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725913984	4	190873445	TTG	T	281	PASS	FRG1	CCDS34121.1	r.481+4_481+5delug	c.259+4_259+5deltg	p.?	Del	ess splice	D	190873445	190873451	2	10	483.859	-	-	2	1	1	FRG1|CCDS34121.1|r.481+4_481+5delug|c.259+4_259+5deltg|p.?|protein_coding:CDS:extended_cis_splice_site:deletion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000159:SO:CGPX03:SO:0001576	FRG1|CCDS34121.1|r.481+4_481+5delug|c.259+4_259+5deltg|p.?|protein_coding:CDS:extended_cis_splice_site:deletion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000159:SO:CGPX03:SO:0001576	./.	0	0	0	0	21	14	21	14	0	0	./.	9	0	10	0	59	34	60	34	11	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725916239	5	5202943	C	CA	629	PASS	ADAMTS16	CCDS43299.1	r.?	-	-	Ins	intronic	I	5202943	5202951	1	40	581.534	-	-	7	1	1	ADAMTS16|CCDS43299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTS16|CCDS43299.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	20	17	21	0	0	./.	7	4	8	4	27	28	28	28	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725916937	5	7213519	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	7213519	7213527	1	16	319.499	-	-	7	1	1	-	-	./.	0	0	0	0	4	27	4	27	0	0	./.	3	3	5	8	20	42	20	42	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725921084	5	18265381	GT	G	300	PASS	-	-	-	-	-	Del	-	D	18265381	18265385	1	10	269.26	-	-	3	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	1	4	3	4	32	22	32	22	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725922237	5	21225095	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	21225095	21225105	1	6	265.045	-	-	9	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	5	0	5	0	49	31	50	31	5	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725922954	5	22842919	C	CAA	1829	PASS	CDH12	CCDS3890.1	r.?	-	-	Ins	intronic	I	22842919	22842923	2	272	1631.48	-	-	3	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	16	15	19	16	32	36	32	36	19	16	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725923755	5	25020990	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	25020990	25020995	1	56	692.249	-	-	4	1	1	-	-	./.	0	0	0	0	30	25	31	25	0	0	./.	7	6	10	8	25	27	26	27	10	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725929010	5	38234151	CT	C	360	PASS	-	-	-	-	-	Del	-	D	38234151	38234154	1	16	323.112	-	-	2	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	3	3	5	4	16	25	16	25	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725930360	5	42292803	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	42292803	42292811	1	8	372.147	-	-	7	1	1	-	-	./.	0	0	0	0	17	24	17	26	0	0	./.	7	0	7	1	28	18	28	18	7	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725934288	5	56356288	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	56356288	56356296	1	20	372.749	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	15	13	0	0	./.	3	4	4	6	21	24	21	24	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725934497	5	56829319	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	56829319	56829328	1	12	265.045	-	-	8	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	3	2	6	4	25	31	25	31	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725936387	5	62699658	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	62699658	62699664	1	15	317.091	-	-	5	1	1	-	-	./.	0	0	0	0	13	21	14	21	0	0	./.	2	4	5	9	39	34	39	34	5	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725940978	5	76510755	TTAAATTATCTGTCTGTTGACCAGGCGAA	T	261	PASS	PDE8B	CCDS4037.1	r.?	-	-	Del	intronic	D	76510755	76510785	28	28	484.668	-	-	1	1	1	PDE8B|CCDS4037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE8B|CCDS4037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	6	3	6	2	18	19	18	20	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725943184	5	82089479	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	82089479	82089489	1	12	319.499	-	-	9	1	1	-	-	./.	0	0	0	0	28	20	28	20	0	0	./.	5	1	5	2	23	36	23	36	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725944197	5	84652007	G	GA	1500	PASS	-	-	-	-	-	Ins	-	I	84652007	84652017	1	182	1322.22	-	-	9	1	1	-	-	./.	0	0	0	0	23	16	24	16	0	0	./.	13	12	17	14	45	29	46	31	17	14	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725946052	5	89897554	A	AT	389	PASS	GPR98	CCDS47246.1	r.?	-	-	Ins	intronic	I	89897554	89897562	1	20	372.749	-	-	7	1	1	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR98|CCDS47246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	29	16	29	0	0	./.	3	4	6	4	27	27	27	27	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725948975	5	99012141	CA	C	720	PASS	-	-	-	-	-	Del	-	D	99012141	99012143	1	49	646.223	-	-	1	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	6	6	12	9	32	26	32	26	12	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725949205	5	99583684	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	99583684	99583694	1	10	266.249	-	-	9	1	1	-	-	./.	0	0	0	0	9	26	9	26	0	0	./.	4	1	4	1	35	17	35	17	4	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725951066	5	104873316	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	104873316	104873324	1	32	530.693	-	-	7	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	7	3	11	5	32	24	33	25	11	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725951315	5	105473352	T	TTA	360	PASS	-	-	-	-	-	Ins	-	I	105473352	105473364	2	15	315.887	-	-	5	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	2	5	4	42	24	42	24	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725952959	5	110568274	T	TA	480	PASS	CAMK4	CCDS4103.1	r.?	-	-	Ins	intronic	I	110568274	110568283	1	25	425.999	-	-	8	1	1	CAMK4|CCDS4103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CAMK4|CCDS4103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	4	4	8	5	41	27	41	27	8	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725953270	5	111550304	C	CA	517	PASS	EPB41L4A	CCDS43350.1	r.?	-	-	Ins	intronic	I	111550304	111550313	1	30	479.249	-	-	8	1	1	EPB41L4A|CCDS43350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPB41L4A|CCDS43350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	5	4	9	8	23	32	23	32	9	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725953844	5	113062043	CT	C	898	PASS	-	-	-	-	-	Del	-	D	113062043	113062046	1	72	860.427	-	-	2	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	11	5	15	9	31	24	31	24	15	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725954538	5	115343883	C	CA	300	PASS	LVRN	CCDS4124.1	r.?	-	-	Ins	intronic	I	115343883	115343892	1	10	266.249	-	-	8	1	1	LVRN|CCDS4124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LVRN|CCDS4124.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	1	4	5	7	25	41	26	41	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725955493	5	117935236	GA	G	749	PASS	ENSG00000232769	ENST00000445069	r.?	-	-	Del	intronic	D	117935236	117935241	1	54	698.269	-	-	4	1	1	ENSG00000232769|ENST00000445069|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232769|ENST00000445069|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	5	8	5	8	30	24	30	24	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725956155	5	119888838	T	TA	360	PASS	PRR16	CCDS4127.1	r.?	-	-	Ins	intronic	I	119888838	119888848	1	16	318.897	-	-	9	1	1	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRR16|CCDS4127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	3	4	3	26	33	26	34	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725956245	5	120124538	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	120124538	120124547	1	20	372.749	-	-	8	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	4	3	5	4	31	36	31	36	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725958134	5	125725639	C	CA	480	PASS	GRAMD3	ENST00000513040	r.?	-	-	Ins	intronic	I	125725639	125725649	1	25	424.795	-	-	9	1	1	GRAMD3|ENST00000513040|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRAMD3|ENST00000513040|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	4	4	5	5	36	26	36	27	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725962552	5	138320079	ACT	A	300	PASS	SIL1	CCDS4209.1	r.?	-	-	Del	intronic	D	138320079	138320084	2	10	269.26	-	-	2	1	1	SIL1|CCDS4209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIL1|CCDS4209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	3	4	11	28	11	28	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725963057	5	139774777	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	139774777	139774786	1	24	425.999	-	-	8	1	1	-	-	./.	0	0	0	0	17	18	17	19	0	0	./.	5	3	10	3	36	24	36	24	10	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725965692	5	147407010	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	147407010	147407017	1	12	265.045	-	-	6	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	2	3	4	4	29	42	29	42	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725966018	5	148415578	T	TAC	360	PASS	SH3TC2	ENST00000504690	r.?	-	-	Ins	intronic	I	148415578	148415593	2	12	315.887	-	-	7	1	1	SH3TC2|ENST00000504690|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3TC2|ENST00000504690|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	20	24	20	0	0	./.	1	5	2	7	20	27	20	27	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725968789	5	156595726	C	CA	480	PASS	FAM71B	CCDS4335.1	r.?	-	-	Ins	upstream	I	156595726	156595734	1	25	425.999	-	-	7	1	1	FAM71B|CCDS4335.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FAM71B|CCDS4335.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	24	13	24	13	0	0	./.	4	4	9	6	25	24	25	24	9	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725969417	5	158319799	C	CA	360	PASS	EBF1	CCDS4343.1	r.?	-	-	Ins	intronic	I	158319799	158319807	1	16	319.499	-	-	7	1	1	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EBF1|CCDS4343.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	3	3	5	4	34	33	34	36	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725969641	5	159033432	TAGAA	T	714	PASS	-	-	-	-	-	Del	-	D	159033432	159033441	4	66	806.575	-	-	2	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	10	6	11	24	27	24	27	6	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725970106	5	160368936	A	AT	436	PASS	-	-	-	-	-	Ins	-	I	160368936	160368943	1	24	425.397	-	-	6	1	1	-	-	./.	0	0	0	0	26	18	26	18	0	0	./.	3	5	4	8	32	46	32	47	4	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725971605	5	164436002	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	164436002	164436012	1	16	319.499	-	-	9	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	3	3	4	4	30	28	30	28	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725971688	5	164566205	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	164566205	164566213	1	27	532.499	-	-	7	1	1	-	-	./.	0	0	0	0	18	21	18	22	0	0	./.	8	2	11	4	52	19	52	19	11	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725972349	5	166367177	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	166367177	166367186	1	27	526.478	-	-	8	1	1	-	-	./.	0	0	0	0	11	28	11	28	0	0	./.	2	8	4	9	26	45	26	45	4	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725977203	5	178498016	A	AT	540	PASS	ZNF354C	CCDS4443.1	r.?	-	-	Ins	intronic	I	178498016	178498026	1	24	479.249	-	-	9	1	1	ZNF354C|CCDS4443.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF354C|CCDS4443.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	2	10	4	19	19	19	19	10	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725978365	6	443074	AG	A	360	PASS	ENSG00000237960	ENST00000449432	r.?	-	-	Del	intronic	D	443074	443077	1	15	323.509	-	-	2	1	1	ENSG00000237960|ENST00000449432|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237960|ENST00000449432|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	2	4	2	8	15	30	15	30	2	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725980297	6	5266745	T	TA	600	PASS	FARS2	CCDS4494.1	r.?	-	-	Ins	intronic	I	5266745	5266754	1	32	531.355	-	-	8	1	1	FARS2|CCDS4494.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	12	21	13	0	0	./.	7	3	11	4	34	26	34	26	11	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725983969	6	13941180	C	CT	480	PASS	RNF182	ENST00000488300	r.?	-	-	Ins	intronic	I	13941180	13941190	1	25	425.325	-	-	9	1	1	RNF182|ENST00000488300|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RNF182|ENST00000488300|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	18	18	0	0	./.	4	4	7	6	28	27	28	27	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725986855	6	20700600	A	AT	360	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Ins	intronic	I	20700600	20700601	1	15	319.295	-	-	0	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	4	2	4	4	32	34	32	34	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725990262	6	28298589	G	GA	509	PASS	ZNF323	CCDS4649.1	r.?	-	-	Ins	intronic	I	28298589	28298596	1	24	479.243	-	-	6	1	1	ZNF323|CCDS4649.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF323|CCDS4649.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	2	7	6	8	54	28	54	28	6	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725990959	6	29805454	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	29805454	29805463	1	18	373.213	-	-	8	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	5	2	6	3	24	25	24	25	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725995623	6	37936513	TG	T	300	PASS	ZFAND3	CCDS4836.1	r.?	-	-	Del	intronic	D	37936513	37936518	1	12	269.591	-	-	4	1	1	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFAND3|CCDS4836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	7	20	7	0	0	./.	3	2	5	3	27	15	27	15	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725995733	6	38218869	A	AAT	300	PASS	BTBD9	CCDS47418.1	r.?	-	-	Ins	intronic	I	38218869	38218871	2	12	263.57	-	-	0	1	1	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BTBD9|CCDS47418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	15	8	15	0	0	./.	2	3	2	5	17	21	18	21	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2725999035	6	47545145	TCTTA	T	449	PASS	CD2AP	CCDS34472.1	r.?	-	-	Del	intronic	D	47545145	47545153	4	25	427.131	-	-	1	1	1	CD2AP|CCDS34472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD2AP|CCDS34472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	4	4	4	5	23	24	24	24	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726000193	6	51203888	AT	A	480	PASS	-	-	-	-	-	Del	-	D	51203888	51203892	1	21	431.345	-	-	3	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	6	2	10	7	28	20	28	20	10	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726000502	6	52078821	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	52078821	52078829	1	12	319.897	-	-	7	1	1	-	-	./.	0	0	0	0	22	18	22	19	0	0	./.	1	5	2	5	25	20	25	21	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726005440	6	65864651	T	TA	420	PASS	EYS	CCDS47445.1	r.?	-	-	Ins	intronic	I	65864651	65864659	1	18	373.213	-	-	7	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	19	22	0	0	./.	5	2	5	2	18	10	18	10	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726006685	6	70070629	A	AT	329	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	70070629	70070638	1	15	319.897	-	-	8	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	2	4	4	7	16	16	16	16	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726008741	6	78743022	TA	T	660	PASS	-	-	-	-	-	Del	-	D	78743022	78743029	1	36	593.1	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	8	3	9	6	22	17	22	17	9	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726011086	6	88437957	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	88437957	88437967	1	12	265.979	-	-	9	1	-	-	-	./.	0	0	0	0	19	12	20	12	0	0	./.	3	2	3	3	14	13	15	13	3	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726012835	6	96218928	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	96218928	96218936	1	12	319.897	-	-	7	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	5	1	8	2	20	14	20	14	8	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726013259	6	97931937	ACTTC	A	567	PASS	-	-	-	-	-	Del	-	D	97931937	97931946	4	40	593.1	-	-	2	1	1	-	-	./.	0	0	0	0	17	32	17	32	0	0	./.	4	7	5	7	13	19	13	19	5	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726015122	6	105426040	C	CT	629	PASS	LIN28B	CCDS34504.1	r.?	-	-	Ins	intronic	I	105426040	105426048	1	40	586.477	-	-	7	1	1	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	15	17	0	0	./.	4	7	6	11	20	15	20	15	6	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726016002	6	108627099	TTTTG	T	420	PASS	LACE1	CCDS5067.1	r.?	-	-	Del	intronic	D	108627099	108627119	4	18	376.223	-	-	4	1	1	LACE1|CCDS5067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LACE1|CCDS5067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	2	5	3	7	13	17	13	17	3	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726016097	6	109120610	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	109120610	109120619	1	28	479.845	-	-	8	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	6	3	7	8	9	9	9	9	7	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726017382	6	114367835	ACT	A	569	PASS	-	-	-	-	-	Del	-	D	114367835	114367840	2	36	538.58	-	-	2	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	5	5	8	7	20	16	20	16	8	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726017874	6	116613835	C	CA	720	PASS	DSE	CCDS5107.1	r.?	-	-	Ins	intronic	I	116613835	116613845	1	45	639.793	-	-	9	1	1	DSE|CCDS5107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DSE|CCDS5107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	8	4	9	4	22	14	22	14	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726019206	6	122138084	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	122138084	122138093	1	32	533.161	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	7	3	11	5	26	11	26	11	11	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726020569	6	128720341	T	TA	480	PASS	PTPRK	CCDS47473.1	r.?	-	-	Ins	intronic	I	128720341	128720350	1	21	425.927	-	-	8	1	1	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	6	4	7	12	15	12	15	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726025716	6	152273112	TC	T	480	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152273112	152273116	1	21	430.743	-	-	3	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	23	21	23	0	0	./.	2	6	3	8	11	23	11	23	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726027942	6	160893263	GT	G	509	PASS	-	-	-	-	-	Del	-	D	160893263	160893273	1	30	482.253	-	-	9	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	4	5	4	5	12	13	12	13	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726030659	7	1292979	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	1292979	1292987	1	12	264.837	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	3	4	28	20	28	20	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726035415	7	11215934	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	11215934	11215944	1	40	634.285	-	-	9	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	9	3	11	6	45	34	45	34	11	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726035640	7	11793416	CAG	C	300	PASS	THSD7A	CCDS47543.1	r.?	-	-	Del	intronic	D	11793416	11793434	2	10	269.052	-	-	8	1	-	THSD7A|CCDS47543.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THSD7A|CCDS47543.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	1	4	4	5	57	32	57	32	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726036594	7	14284792	T	TAC	300	PASS	DGKB	CCDS47547.1	r.?	-	-	Ins	intronic	I	14284792	14284811	2	12	263.031	-	-	9	1	-	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	24	15	25	0	0	./.	2	3	2	3	37	31	37	31	2	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726037874	7	17548026	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	17548026	17548034	1	12	265.44	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	2	3	6	3	35	26	35	27	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726039884	7	22673485	T	TG	600	PASS	ENSG00000105889	ENST00000439708	r.?	-	-	Ins	upstream	I	22673485	22673493	1	27	530.879	-	-	7	1	1	ENSG00000105889|ENST00000439708|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000105889|ENST00000439708|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	14	12	14	0	0	./.	2	8	3	8	30	27	30	27	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726041138	7	25335559	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	25335559	25335568	1	10	265.44	-	-	8	1	1	-	-	./.	0	0	0	0	15	18	15	19	0	0	./.	4	1	5	5	44	47	46	47	5	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726042912	7	29502379	C	CT	537	PASS	CHN2	CCDS5420.1	r.?	-	-	Ins	intronic	I	29502379	29502389	1	30	477.671	-	-	9	1	1	CHN2|CCDS5420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHN2|CCDS5420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	23	16	23	0	0	./.	5	4	7	6	36	30	36	30	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726045281	7	35870938	C	CT	420	PASS	SEPT7	ENST00000435235	r.?	-	-	Ins	intronic	I	35870938	35870947	1	20	371.856	-	-	8	1	1	SEPT7|ENST00000435235|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SEPT7|ENST00000435235|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	15	25	15	0	0	./.	4	3	5	6	37	50	37	50	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726045901	7	37375178	TAA	T	360	PASS	ELMO1	CCDS5449.1	r.?	-	-	Del	intronic	D	37375178	37375182	2	12	322.862	-	-	3	1	1	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	26	18	26	0	0	./.	5	1	8	2	33	25	33	25	8	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726046448	7	38777799	G	GA	660	PASS	VPS41	CCDS5457.1	r.?	-	-	Ins	intronic	I	38777799	38777807	1	22	585.291	-	-	7	1	1	VPS41|CCDS5457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS41|CCDS5457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	18	25	19	0	0	./.	10	1	12	2	55	23	55	23	12	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726047406	7	40781515	G	GA	569	PASS	C7orf10	ENST00000309930	r.?	-	-	Ins	intronic	I	40781515	40781523	1	35	532.083	-	-	7	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	6	4	9	5	34	57	34	57	9	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726048566	7	43852245	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	43852245	43852262	2	10	268.45	-	-	8	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	4	2	4	37	30	37	30	2	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726050338	7	48293850	G	GT	1440	PASS	ABCA13	CCDS47584.1	r.?	-	-	Ins	intronic	I	48293850	48293858	1	160	1275.19	-	-	7	1	1	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	26	27	26	0	0	./.	9	15	16	24	33	51	33	51	16	24	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726054315	7	57520261	A	AT	528	PASS	ZNF716	ENST00000420713	r.?	-	-	Ins	intronic	I	57520261	57520270	1	35	532.083	-	-	8	1	1	ZNF716|ENST00000420713|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF716|ENST00000420713|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	6	4	8	5	31	24	31	26	8	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726054388	7	57600886	G	GT	505	PASS	-	-	-	-	-	Ins	-	I	57600886	57600894	1	28	478.875	-	-	7	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	6	3	7	4	38	34	38	36	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726057218	7	64846506	CATA	C	389	PASS	ZNF92	CCDS34646.1	r.?	-	-	Del	intronic	D	64846506	64846513	3	20	373.06	-	-	2	1	1	ZNF92|CCDS34646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF92|CCDS34646.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	4	4	6	29	40	29	40	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726065020	7	79672056	CTATT	C	420	PASS	-	-	-	-	-	Del	-	D	79672056	79672061	4	8	376.673	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	0	7	1	8	33	44	33	44	1	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726065027	7	79697292	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	79697292	79697301	1	16	318.648	-	-	8	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	3	3	6	7	34	31	34	31	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726067885	7	86955312	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	86955312	86955319	1	35	532.083	-	-	6	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	6	4	6	4	31	35	31	35	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726068705	7	89371976	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	89371976	89371983	1	30	478.273	-	-	6	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	5	4	6	7	30	60	30	60	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726070238	7	94030957	C	CA	540	PASS	COL1A2	CCDS34682.1	r.?	-	-	Ins	intronic	I	94030957	94030965	1	28	478.875	-	-	7	1	1	COL1A2|CCDS34682.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL1A2|CCDS34682.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	6	3	10	6	42	23	43	23	10	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726071861	7	98100346	A	AT	478	PASS	-	-	-	-	-	Ins	-	I	98100346	98100356	1	10	475.865	-	-	9	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	0	9	2	12	12	35	12	35	2	12	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726071887	7	98166994	AT	A	420	PASS	-	-	-	-	-	Del	-	D	98166994	98166998	1	14	370.05	-	-	3	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	6	4	8	35	37	35	37	4	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726074413	7	103181704	C	CT	720	PASS	RELN	CCDS47680.1	r.?	-	-	Ins	intronic	I	103181704	103181708	1	40	635.49	-	-	3	1	1	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RELN|CCDS47680.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	9	3	11	8	41	24	41	24	11	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726081702	7	123025453	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	123025453	123025462	1	15	319.25	-	-	8	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	2	4	6	5	46	35	46	37	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726082099	7	124014292	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	124014292	124014302	1	45	638.5	-	-	9	1	1	-	-	./.	0	0	0	0	24	24	24	24	0	0	./.	4	8	9	9	37	42	38	42	9	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726082308	7	124520215	T	TA	300	PASS	POT1	CCDS5793.1	r.?	-	-	Ins	intronic	I	124520215	124520225	1	12	266.042	-	-	9	1	1	POT1|CCDS5793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POT1|CCDS5793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	2	3	3	4	52	53	52	54	3	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726083010	7	126195946	TTGAC	T	418	PASS	GRM8	CCDS5794.1	r.?	-	-	Del	intronic	D	126195946	126195953	4	24	427.473	-	-	1	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	5	3	7	32	47	32	47	3	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726096063	7	155632004	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	155632004	155632006	1	20	372.458	-	-	1	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	4	3	6	4	35	38	35	38	6	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726096269	7	156207114	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	156207114	156207123	1	20	371.254	-	-	8	1	1	-	-	./.	0	0	0	0	21	22	22	22	0	0	./.	4	3	4	7	24	28	24	28	4	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726096965	7	157570685	AAT	A	300	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	157570685	157570689	2	6	264.235	-	-	1	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	19	24	19	0	0	./.	5	0	7	0	38	34	38	34	7	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726097165	7	158251368	GCA	G	689	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	158251368	158251373	2	40	643.918	-	-	2	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	9	4	13	21	35	21	35	4	13	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726097239	7	158426162	T	TGAGG	389	PASS	NCAPG2	CCDS43686.1	r.?	-	-	Ins	intronic	I	158426162	158426168	4	20	359.815	-	-	1	1	1	NCAPG2|CCDS43686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NCAPG2|CCDS43686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	4	4	3	39	45	39	46	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726100229	8	9891018	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	9891018	9891026	1	12	319.988	-	-	7	1	1	-	-	./.	0	0	0	0	30	14	30	14	0	0	./.	5	1	5	2	15	7	15	7	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726100458	8	10820061	TG	T	300	PASS	XKR6	CCDS5978.2	r.?	-	-	Del	intronic	D	10820061	10820064	1	12	269.667	-	-	2	1	1	XKR6|CCDS5978.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR6|CCDS5978.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	20	24	20	0	0	./.	2	3	8	4	20	11	20	11	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726102076	8	15828224	AC	A	480	PASS	-	-	-	-	-	Del	-	D	15828224	15828227	1	24	430.865	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	4	9	6	11	6	11	4	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726103618	8	21368025	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	21368025	21368032	1	20	373.319	-	-	6	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	4	3	5	4	14	6	14	6	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726103782	8	22065253	G	GAA	300	PASS	BMP1	CCDS6026.1	r.?	-	-	Ins	intronic	I	22065253	22065255	2	12	263.646	-	-	1	1	1	BMP1|CCDS6026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BMP1|CCDS6026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	12	0	0	./.	2	3	2	5	11	10	11	10	2	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726103860	8	22361660	G	GT	540	PASS	PPP3CC	CCDS34859.1	r.?	-	-	Ins	intronic	I	22361660	22361670	1	30	474.563	-	-	9	1	1	PPP3CC|CCDS34859.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP3CC|CCDS34859.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	5	4	7	7	16	17	16	17	7	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726105432	8	27471327	A	AT	360	PASS	CLU	CCDS47832.1	r.?	-	-	Ins	upstream	I	27471327	27471332	1	16	319.988	-	-	4	1	1	CLU|CCDS47832.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CLU|CCDS6061.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	16	18	0	0	./.	3	3	3	3	65	47	66	47	3	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726105700	8	27977439	A	AT	420	PASS	ELP3	CCDS6065.1	r.?	-	-	Ins	intronic	I	27977439	27977442	1	8	372.717	-	-	2	1	1	ELP3|CCDS6065.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ELP3|CCDS6065.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	7	0	7	0	47	16	47	16	7	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726108991	8	37444169	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	37444169	37444178	1	12	266.656	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	7	5	103	98	104	99	7	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726109064	8	37556430	AAAT	A	449	PASS	ZNF703	CCDS6094.1	r.?	-	-	Del	downstream	D	37556430	37556441	3	21	431.467	-	-	3	1	1	ZNF703|CCDS6094.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ZNF703|CCDS6094.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	13	20	13	20	0	0	./.	2	6	3	11	77	85	77	85	3	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726111114	8	42000035	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	42000035	42000044	1	14	367.9	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	16	0	0	./.	1	6	2	8	20	26	20	27	2	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726111245	8	42444136	A	AT	898	PASS	-	-	-	-	-	Ins	-	I	42444136	42444145	1	81	853.301	-	-	8	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	8	8	15	13	18	22	18	22	15	13	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726112337	8	50200432	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	50200432	50200440	1	35	533.313	-	-	7	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	6	4	6	22	19	22	20	4	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726115575	8	61212615	TAC	T	389	PASS	-	-	-	-	-	Del	-	D	61212615	61212619	2	14	377.533	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	6	4	9	12	25	12	25	4	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726115841	8	62103231	TA	T	387	PASS	-	-	-	-	-	Del	-	D	62103231	62103238	1	40	592.665	-	-	6	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	4	7	4	8	21	22	22	22	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726116508	8	64416027	CTGTTCCACATCCTTGCCAGCATTTGGTGT	C	261	PASS	-	-	-	-	-	Del	-	D	64416027	64416060	29	30	482.39	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	4	2	4	25	23	28	23	5	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726118144	8	69065661	CT	C	480	PASS	PREX2	CCDS6201.1	r.?	-	-	Del	intronic	D	69065661	69065668	1	25	431.467	-	-	6	1	1	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	4	4	6	5	37	28	37	28	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726120249	8	74585932	G	GA	898	PASS	STAU2	CCDS6214.1	r.?	-	-	Ins	intronic	I	74585932	74585939	1	80	852.699	-	-	6	1	1	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STAU2|CCDS6214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	7	9	11	15	51	77	51	78	11	16	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726120393	8	74770614	AG	A	300	PASS	UBE2W	CCDS47875.1	r.?	-	-	Del	intronic	D	74770614	74770616	1	6	264.85	-	-	1	1	1	UBE2W|CCDS47875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2W|CCDS47875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	5	0	18	0	62	46	62	46	18	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726120806	8	75749834	C	CT	720	PASS	PI15	CCDS6218.1	r.?	-	-	Ins	intronic	I	75749834	75749844	1	48	638.169	-	-	9	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	15	23	15	0	0	./.	5	7	8	7	23	23	23	23	8	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726121427	8	77408195	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	77408195	77408204	1	12	266.656	-	-	8	1	1	-	-	./.	0	0	0	0	23	14	24	14	0	0	./.	3	2	4	4	29	38	30	38	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726121476	8	77622223	T	TA	1260	PASS	ZFHX4	CCDS47878.1	r.?	-	-	Ins	intronic	I	77622223	77622227	1	112	1119.36	-	-	3	1	1	ZFHX4|CCDS47878.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFHX4|CCDS47878.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	15	6	19	9	37	23	37	23	19	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726121911	8	79040309	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	79040309	79040318	1	72	799.367	-	-	8	1	1	-	-	./.	0	0	0	0	31	20	31	20	0	0	./.	7	8	7	11	26	35	26	36	7	11	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726122373	8	80890236	T	TA	269	PASS	MRPS28	CCDS6226.1	r.?	-	-	Ins	intronic	I	80890236	80890244	1	6	265.452	-	-	7	1	1	MRPS28|CCDS6226.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MRPS28|CCDS6226.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	5	0	6	0	28	12	28	12	6	0	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726123387	8	83623425	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	83623425	83623435	1	42	580.624	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	6	6	7	34	32	34	32	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726124147	8	85700675	C	CA	337	PASS	RALYL	ENST00000399361	r.?	-	-	Ins	intronic	I	85700675	85700682	1	15	319.386	-	-	6	1	1	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	27	20	28	0	0	./.	2	4	2	4	12	33	12	33	2	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726127757	8	96486717	C	CTT	292	PASS	-	-	-	-	-	Ins	-	I	96486717	96486723	2	24	474.563	-	-	5	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	7	2	0	1	58	47	60	48	7	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726127918	8	96838145	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	96838145	96838155	1	24	479.982	-	-	9	1	1	-	-	./.	0	0	0	0	22	20	22	21	0	0	./.	7	2	7	4	40	29	41	29	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726132440	8	106897150	TTTCATTCTTTTACTGCTC	T	348	PASS	-	-	-	-	-	Del	-	D	106897150	106897171	18	48	647.2	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	7	6	6	30	43	30	44	6	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726133940	8	110784115	GTTCACTCTGATGGTAA	G	302	PASS	-	-	-	-	-	Del	-	D	110784115	110784134	16	63	748.444	-	-	1	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	8	6	8	7	25	27	26	27	9	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726134139	8	111541088	G	GT	689	PASS	-	-	-	-	-	Ins	-	I	111541088	111541096	1	49	638.771	-	-	7	1	1	-	-	./.	0	0	0	0	17	17	18	17	0	0	./.	6	6	7	6	53	38	53	38	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726134215	8	111697158	T	TA	517	PASS	-	-	-	-	-	Ins	-	I	111697158	111697168	1	30	479.982	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	4	5	5	6	41	35	42	35	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726134216	8	111698301	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	111698301	111698309	1	27	533.313	-	-	7	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	2	8	4	9	32	48	33	48	4	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726134895	8	113516208	TG	T	360	PASS	CSMD3	CCDS6315.1	r.5141-3delc	c.4896-3delc	p.?	Del	splice region	D	113516208	113516210	1	15	323.6	-	-	1	1	-	CSMD3|CCDS6315.1|r.5141-3delc|c.4896-3delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	CSMD3|CCDS6315.1|r.5141-3delc|c.4896-3delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	15	19	15	19	0	0	./.	4	2	5	2	49	49	49	49	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726135139	8	114355979	G	GA	900	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	114355979	114355987	1	70	795.755	-	-	7	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	21	0	0	./.	6	9	15	15	41	31	41	32	15	15	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726136685	8	118264493	TTAA	T	1225	PASS	-	-	-	-	-	Del	-	D	118264493	118264501	3	136	1240.47	-	-	2	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	16	7	20	8	46	21	46	21	20	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726136743	8	118406250	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	118406250	118406260	1	20	532.109	-	-	9	1	1	-	-	./.	0	0	0	0	21	5	21	5	0	0	./.	9	1	14	1	53	11	54	12	14	1	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726137240	8	119689385	AAAG	A	540	PASS	-	-	-	-	-	Del	-	D	119689385	119689392	3	30	485.4	-	-	2	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	4	5	5	8	31	36	31	36	5	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726139872	8	125685015	CAT	C	300	PASS	MTSS1	CCDS6353.1	r.?	-	-	Del	intronic	D	125685015	125685018	2	10	269.667	-	-	1	1	1	MTSS1|CCDS6353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTSS1|CCDS6353.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	1	5	2	30	25	30	25	5	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726141963	8	131229558	G	GT	300	PASS	ASAP1	CCDS6362.1	r.?	-	-	Ins	intronic	I	131229558	131229567	1	12	261.84	-	-	8	1	1	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	23	17	23	0	0	./.	3	2	6	5	19	20	19	20	6	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726142230	8	132114758	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	132114758	132114762	1	7	314.569	-	-	3	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	6	0	9	4	19	32	20	32	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726143930	8	136654747	A	AT	418	PASS	KHDRBS3	CCDS6374.1	r.?	-	-	Ins	intronic	I	136654747	136654754	1	16	426.65	-	-	6	1	1	KHDRBS3|CCDS6374.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KHDRBS3|CCDS6374.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	14	16	0	0	./.	1	7	2	7	128	85	129	85	2	7	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726144451	8	138180338	AC	A	300	PASS	-	-	-	-	-	Del	-	D	138180338	138180340	1	12	268.463	-	-	1	1	1	-	-	./.	0	0	0	0	24	20	24	20	0	0	./.	3	2	3	2	30	18	30	18	3	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726145446	8	141455072	TCG	T	360	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	141455072	141455076	2	16	323.6	-	-	1	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	6	3	7	9	7	9	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726149692	9	9313932	TTGTC	T	300	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9313932	9313940	4	12	270.642	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	2	3	4	4	23	15	23	15	4	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726152527	9	19839473	C	CT	417	PASS	-	-	-	-	-	Ins	-	I	19839473	19839483	1	18	372.275	-	-	9	1	1	-	-	./.	0	0	0	0	20	10	21	10	0	0	./.	5	2	6	2	23	19	23	19	6	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726153535	9	24991764	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	24991764	24991773	1	12	267.631	-	-	8	1	-	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	5	6	15	18	15	18	5	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726153764	9	25848356	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	25848356	25848365	1	30	585.778	-	-	8	1	1	-	-	./.	0	0	0	0	18	25	18	25	0	0	./.	2	9	11	16	21	19	21	19	11	16	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726155699	9	33441168	A	AT	300	PASS	AQP3	CCDS6542.1	r.1832_1833insa	c.?	p.?	Ins	3'UTR variant	I	33441168	33441170	1	12	267.631	-	-	1	1	1	AQP3|CCDS6542.1|r.1832_1833insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	AQP3|CCDS6542.1|r.1832_1833insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	22	11	23	0	0	./.	3	2	5	3	11	6	11	6	5	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726161666	9	73899135	TA	T	420	PASS	TRPM3	ENST00000357533	r.?	-	-	Del	intronic	D	73899135	73899137	1	18	378.898	-	-	1	1	1	TRPM3|ENST00000357533|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM3|ENST00000357533|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	5	2	9	4	12	6	12	6	9	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726163601	9	81261207	T	TTA	420	PASS	-	-	-	-	-	Ins	-	I	81261207	81261223	2	18	370.469	-	-	7	1	1	-	-	./.	0	0	0	0	21	7	21	8	0	0	./.	5	2	7	2	9	4	9	4	7	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726166327	9	94160642	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	94160642	94160649	1	30	473.909	-	-	6	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	5	4	9	8	16	18	16	18	9	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726168205	9	102054673	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	102054673	102054679	1	15	321.157	-	-	5	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	2	6	3	12	9	12	9	6	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726170185	9	111224015	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	111224015	111224022	1	18	374.684	-	-	6	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	5	2	8	4	19	24	20	25	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726171291	9	115003395	A	AT	420	PASS	ROD1	CCDS6784.1	r.?	-	-	Ins	intronic	I	115003395	115003403	1	18	374.082	-	-	7	1	1	ROD1|CCDS6784.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROD1|CCDS6784.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	5	2	7	2	18	13	18	13	7	2	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726172069	9	117513213	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	117513213	117513223	1	12	267.631	-	-	9	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	3	2	8	5	18	13	18	13	8	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726173240	9	122371447	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	122371447	122371457	1	12	267.029	-	-	9	1	1	-	-	./.	0	0	0	0	15	18	15	19	0	0	./.	2	3	3	5	11	16	11	16	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726174770	9	128705835	G	GT	778	PASS	PBX3	CCDS6865.1	r.?	-	-	Ins	intronic	I	128705835	128705841	1	63	746.959	-	-	5	1	1	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	6	8	6	9	9	13	10	13	6	9	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726174919	9	129329310	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	129329310	129329318	1	20	374.082	-	-	7	1	1	-	-	./.	0	0	0	0	13	15	14	15	0	0	./.	3	4	3	6	5	12	5	12	3	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726178527	X	5326590	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	5326590	5326597	1	18	482.483	-	-	6	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	8	1	11	4	25	17	25	17	11	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726179045	X	7727435	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	7727435	7727442	1	28	481.279	-	-	6	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	6	3	7	4	17	12	17	13	7	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726182133	X	24173420	G	GT	360	PASS	ZFX	CCDS14211.1	r.?	-	-	Ins	intronic	I	24173420	24173427	1	16	321.656	-	-	6	1	1	ZFX|CCDS14211.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZFX|CCDS14211.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	17	23	17	0	0	./.	3	3	6	6	27	20	28	20	6	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726184712	X	39142064	A	AG	869	PASS	-	-	-	-	-	Ins	-	I	39142064	39142068	1	66	799.924	-	-	3	1	1	-	-	./.	0	0	0	0	13	17	14	17	0	0	./.	5	10	11	14	13	16	13	16	11	14	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726186396	X	47605257	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	47605257	47605267	1	15	309.012	-	-	9	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	2	4	3	8	18	16	18	16	3	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726186688	X	48880749	C	CT	569	PASS	-	-	-	-	-	Ins	-	I	48880749	48880758	1	35	534.888	-	-	8	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	6	4	8	3	21	14	21	15	8	4	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726186818	X	50242097	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	50242097	50242105	1	42	586.692	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	19	0	0	./.	6	5	7	6	17	12	17	12	7	6	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726188414	X	64048882	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	64048882	64048892	1	18	359.611	-	-	9	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	2	5	3	5	10	24	11	25	3	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726189547	X	72716303	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	72716303	72716311	1	12	268.046	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	13	0	0	./.	2	3	2	3	6	7	6	7	2	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726193534	X	100762434	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	100762434	100762441	1	35	536.093	-	-	6	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	6	6	8	11	11	11	11	6	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726194482	X	110272199	A	AT	360	PASS	PAK3	CCDS14554.1	r.?	-	-	Ins	intronic	I	110272199	110272203	1	16	321.656	-	-	3	1	1	PAK3|CCDS14554.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PAK3|CCDS14554.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	18	16	0	0	./.	3	3	4	3	9	11	9	11	4	3	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726196718	X	125643950	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	125643950	125643960	1	8	374.663	-	-	9	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	0	7	2	8	13	15	13	15	2	8	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726197771	X	132325058	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	132325058	132325062	1	20	375.265	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	3	4	5	8	9	8	10	4	5	1	1	1	1	1	1	1	1
2662711	PD18184a	PD18184b	2726197826	X	132630993	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	132630993	132631003	1	12	268.046	-	-	9	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	2	3	3	12	14	32	14	32	3	12	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718653073	1	17029783	CAA	C	360	PASS	-	-	-	-	-	Del	-	D	17029783	17029786	2	12	322.767	-	-	2	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	5	1	6	2	48	31	48	31	6	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718658494	1	33475575	CAG	C	303	PASS	AK2	CCDS373.1	r.1594_1595delCU	c.?	p.?	Del	3'UTR variant	D	33475575	33475578	2	10	483.549	-	-	1	1	1	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	7	11	7	11	0	0	./.	9	0	10	0	37	34	37	34	10	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718669418	1	72540983	TA	T	300	PASS	NEGR1	CCDS661.1	r.?	-	-	Del	intronic	D	72540983	72540987	1	10	268.973	-	-	3	1	1	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	7	1	36	23	36	23	7	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718677227	1	98711770	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	98711770	98711778	1	16	318.553	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	3	3	3	21	21	21	21	3	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718682541	1	117238459	C	CT	540	PASS	C1orf137	ENST00000369482	r.?	-	-	Ins	intronic	I	117238459	117238469	1	28	467.293	-	-	9	1	1	C1orf137|ENST00000369482|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf137|ENST00000369482|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	15	9	0	0	./.	6	3	7	3	30	29	31	29	7	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718688771	1	153035559	C	CA	300	PASS	SPRR2B	CCDS30865.1	r.?	-	-	Ins	intronic	I	153035559	153035569	1	12	265.962	-	-	9	1	1	SPRR2B|CCDS30865.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	SPRR2B|CCDS30865.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	2	3	2	6	25	31	25	31	2	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718691502	1	161497181	G	GGAT	251	PASS	HSPA7	CCDS1231.1	r.?	-	-	Ins	downstream	I	161497181	161497186	3	8	363.918	-	-	1	1	1	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	15	11	15	0	0	./.	7	0	8	0	33	39	34	39	8	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718694020	1	169732632	TC	T	420	PASS	-	-	-	-	-	Del	-	D	169732632	169732635	1	20	376.562	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	4	3	5	3	34	39	34	39	5	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718695649	1	175219126	TG	T	300	PASS	-	-	-	-	-	Del	-	D	175219126	175219128	1	6	262.952	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	0	5	0	28	26	28	26	5	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718698768	1	185819511	A	AT	360	PASS	HMCN1	CCDS30956.1	r.?	-	-	Ins	intronic	I	185819511	185819521	1	15	319.155	-	-	9	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	4	2	7	3	30	36	31	36	7	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718708569	1	216654124	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	216654124	216654144	2	12	267.166	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	3	2	27	28	27	28	3	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718714697	1	235725947	GAAAAAAAAAAAGAA	G	290	PASS	GNG4	CCDS1607.1	r.?	-	-	Del	intronic	D	235725947	235725986	14	35	524.7	-	-	2	1	-	GNG4|CCDS1607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNG4|CCDS1607.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	6	4	5	3	15	23	16	24	6	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718717403	1	242274736	GA	G	565	PASS	PLD5	CCDS1621.1	r.?	-	-	Del	intronic	D	242274736	242274739	1	45	640.718	-	-	2	1	1	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	4	8	6	8	38	31	38	31	6	8	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718718202	1	244709901	TGAGAAAACAATACATGATCA	T	290	PASS	C1orf101	CCDS44340.1	r.?	-	-	Del	intronic	D	244709901	244709924	20	35	535.537	-	-	1	1	1	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	6	4	6	4	33	31	33	31	6	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718727430	10	20653100	AT	A	600	PASS	-	-	-	-	-	Del	-	D	20653100	20653107	1	36	539.821	-	-	6	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	5	5	6	7	26	29	26	29	6	7	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718738888	10	57341603	AT	A	300	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	57341603	57341613	1	10	264.492	-	-	9	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	4	1	30	25	30	25	4	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718746484	10	82442062	TC	T	269	PASS	-	-	-	-	-	Del	-	D	82442062	82442064	1	6	246.43	-	-	1	1	-	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	0	5	0	9	15	32	15	32	0	10	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718747141	10	84977680	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	84977680	84977690	1	12	266.298	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	2	30	25	30	26	4	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718751584	10	100812261	G	GA	300	PASS	HPSE2	CCDS7477.1	r.?	-	-	Ins	intronic	I	100812261	100812271	1	10	266.9	-	-	9	1	1	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HPSE2|CCDS7477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	4	2	29	26	31	26	4	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718764557	11	6968834	CA	C	780	PASS	ZNF215	CCDS7775.1	r.?	-	-	Del	intronic	D	6968834	6968838	1	50	702.403	-	-	3	1	1	ZNF215|CCDS7775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF215|CCDS7775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	9	4	10	4	45	22	45	22	10	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718773782	11	36773542	TAG	T	300	PASS	-	-	-	-	-	Del	-	D	36773542	36773561	2	12	269.182	-	-	9	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	4	2	19	28	19	28	4	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718775991	11	43648096	AT	A	600	PASS	-	-	-	-	-	Del	-	D	43648096	43648105	1	32	540.773	-	-	8	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	7	3	8	3	32	21	32	21	8	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718792890	11	103743693	TG	T	300	PASS	-	-	-	-	-	Del	-	D	103743693	103743697	1	12	270.387	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	3	4	26	25	26	25	3	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718801666	11	133332183	AT	A	480	PASS	ENSG00000183715	CCDS31722.1	r.?	-	-	Del	intronic	D	133332183	133332190	1	24	430.812	-	-	6	1	1	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	3	5	3	5	23	24	23	24	3	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718814312	12	39129159	CTGT	C	449	PASS	CPNE8	CCDS8733.1	r.?	-	-	Del	intronic	D	39129159	39129163	3	24	432.848	-	-	1	1	1	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	3	6	24	26	24	26	3	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718822837	12	69546253	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	69546253	69546260	1	28	481.535	-	-	6	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	6	3	7	3	36	33	36	33	7	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718864210	13	95542765	TG	T	465	PASS	AL139381.2	ENST00000505287	r.?	-	-	Del	intronic	D	95542765	95542767	1	9	424.953	-	-	1	1	1	AL139381.2|ENST00000505287|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL139381.2|ENST00000505287|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	8	0	13	0	25	14	25	14	13	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718889633	14	82204988	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	82204988	82204996	1	12	268.289	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	2	3	33	22	34	22	2	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718892232	14	90965045	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	90965045	90965053	1	12	268.289	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	4	5	20	26	20	26	4	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718894691	14	98949690	CT	C	360	PASS	-	-	-	-	-	Del	-	D	98949690	98949695	1	12	325.559	-	-	4	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	1	5	1	5	26	16	26	16	1	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718897625	15	20120687	CTTCG	CCA	316	PASS	-	-	-	-	-	Complex	-	DI	20120688	20120691	4	90	0	-	-	0	1	1	-	-	./.	0	0	0	0	80	86	80	86	0	0	./.	9	8	0	0	224	175	224	176	9	8	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718909283	15	56007769	AG	A	300	PASS	PRTG	CCDS42040.1	r.?	-	-	Del	intronic	D	56007769	56007772	1	12	271.388	-	-	2	1	1	PRTG|CCDS42040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRTG|CCDS42040.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	2	4	3	30	18	30	18	4	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718921592	15	95811624	G	GGT	536	PASS	-	-	-	-	-	Ins	-	I	95811624	95811625	2	30	562.133	-	-	0	1	1	-	-	./.	0	0	0	0	13	7	14	7	0	0	./.	2	9	0	0	25	30	25	30	2	9	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718927569	16	11291041	G	GT	449	PASS	-	-	-	-	-	Ins	-	I	11291041	11291043	1	25	427.54	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	12	0	0	./.	4	4	5	5	24	29	24	29	5	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718928376	16	13807848	TTTTG	T	449	PASS	-	-	-	-	-	Del	-	D	13807848	13807873	4	24	434.163	-	-	6	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	5	3	6	22	36	22	36	3	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718933421	16	31698414	AG	A	456	PASS	-	-	-	-	-	Del	-	D	31698414	31698416	1	16	432.959	-	-	1	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	7	1	8	2	24	27	24	27	8	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718934914	16	33773487	G	GT	379	PASS	ENSG00000198555	ENST00000359871	r.?	-	-	Ins	upstream	I	33773487	33773496	1	36	534.877	-	-	8	1	1	ENSG00000198555|ENST00000359871|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000198555|ENST00000359871|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	20	28	20	28	0	0	./.	5	5	5	5	31	32	31	32	5	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718942002	16	68863559	C	CT	480	PASS	CDH1	CCDS10869.1	r.2489_2490insu	c.2298_2299insT	p.D768fs*1	Ins	frameshift	I	68863559	68863563	1	24	428.142	-	-	3	1	1	CDH1|CCDS10869.1|r.2489_2490insu|c.2298_2299insT|p.D768fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	CDH1|CCDS10869.1|r.2489_2490insu|c.2298_2299insT|p.D768fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	7	14	7	14	0	0	./.	5	3	7	4	27	26	27	26	7	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718945993	16	81179240	CT	C	360	PASS	PKD1L2	ENST00000299598	r.?	-	-	Del	intronic	D	81179240	81179249	1	16	325.02	-	-	8	1	1	PKD1L2|ENST00000299598|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	PKD1L2|ENST00000299598|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	3	5	18	26	18	26	3	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718973753	18	1777355	TC	T	480	PASS	-	-	-	-	-	Del	-	D	1777355	1777357	1	21	434.205	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	2	6	2	31	34	31	34	6	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718990411	18	60134387	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	60134387	60134396	1	10	265.357	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	16	12	0	0	./.	4	1	5	1	31	17	32	19	5	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2718991575	18	63864070	G	GA	277	PASS	-	-	-	-	-	Ins	-	I	63864070	63864077	1	12	265.357	-	-	6	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	3	2	4	3	23	33	23	33	4	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719004923	19	22055987	TAA	T	300	PASS	-	-	-	-	-	Del	-	D	22055987	22055992	2	10	269.731	-	-	4	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	4	1	4	1	31	14	31	14	4	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719005081	19	22467710	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	22467710	22467716	1	12	266.119	-	-	5	1	1	-	-	./.	0	0	0	0	15	13	15	14	0	0	./.	2	3	3	3	35	23	36	23	3	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719006077	19	24467510	CT	C	328	PASS	-	-	-	-	-	Del	-	D	24467510	24467514	1	12	325.845	-	-	3	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	1	5	1	6	33	32	33	32	1	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719011163	19	43357398	CTT	C	417	PASS	PSG1	ENST00000449000	r.?	-	-	Del	intronic	D	43357398	43357401	2	20	378.948	-	-	2	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	4	3	4	3	46	28	46	28	4	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719019623	2	7637733	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	7637733	7637743	1	12	264.4	-	-	9	1	-	-	-	./.	0	0	0	0	16	13	17	13	0	0	./.	2	3	2	3	26	29	26	29	2	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719023571	2	21083812	GA	G	300	PASS	-	-	-	-	-	Del	-	D	21083812	21083814	1	10	259.583	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	1	4	2	5	23	23	23	23	2	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719028425	2	36633759	GA	G	269	PASS	CRIM1	CCDS1783.1	r.?	-	-	Del	intronic	D	36633759	36633761	1	6	255.369	-	-	1	1	1	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	0	5	0	8	21	33	21	33	0	8	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719041456	2	83840736	ACAC	ACC	300	PASS	-	-	-	-	-	Complex	-	DI	83840737	83840739	3	10	0	-	-	0	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	0	0	21	30	21	30	4	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719049165	2	114722181	A	AT	300	PASS	ACTR3	CCDS33277.1	r.?	-	-	Ins	downstream	I	114722181	114722191	1	12	248.144	-	-	9	1	1	ACTR3|CCDS33277.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ACTR3|CCDS33277.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	2	3	29	37	30	38	2	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719050199	2	118651553	AT	A	300	PASS	-	-	-	-	-	Del	-	D	118651553	118651562	1	10	269.216	-	-	8	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	1	4	2	30	26	30	26	4	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719058700	2	147326164	TA	T	360	PASS	-	-	-	-	-	Del	-	D	147326164	147326166	1	15	321.253	-	-	1	1	1	-	-	./.	0	0	0	0	15	27	15	27	0	0	./.	2	4	2	4	27	33	27	33	2	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719064584	2	169199952	T	TTA	269	PASS	-	-	-	-	-	Ins	-	I	169199952	169199953	2	10	261.992	-	-	0	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	4	0	0	15	27	15	27	1	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719089104	20	7815940	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	7815940	7815949	1	12	268.428	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	4	4	33	29	33	29	4	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719090721	20	13206137	CT	C	480	PASS	ISM1	CCDS46579.1	r.?	-	-	Del	intronic	D	13206137	13206145	1	24	435.265	-	-	7	1	1	ISM1|CCDS46579.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ISM1|CCDS46579.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	3	7	6	41	17	41	17	7	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719091822	20	16912342	CA	C	360	PASS	-	-	-	-	-	Del	-	D	16912342	16912347	1	16	326.449	-	-	4	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	5	3	34	22	34	22	5	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719144226	3	43004455	GA	G	300	PASS	-	-	-	-	-	Del	-	D	43004455	43004461	1	12	269.686	-	-	5	1	1	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	3	2	6	2	38	29	38	29	6	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719147893	3	57141664	C	CA	420	PASS	IL17RD	CCDS2880.2	r.?	-	-	Ins	intronic	I	57141664	57141668	1	14	369.733	-	-	3	1	1	IL17RD|CCDS2880.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL17RD|CCDS2880.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	12	14	0	0	./.	6	1	8	1	30	26	30	26	8	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719160353	3	100335491	CA	C	300	PASS	GPR128	CCDS2938.1	r.?	-	-	Del	intronic	D	100335491	100335496	1	12	269.686	-	-	4	1	1	GPR128|CCDS2938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR128|CCDS2938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	4	2	20	21	20	21	4	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719162469	3	107224608	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	107224608	107224618	1	12	266.675	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	11	8	0	0	./.	3	2	3	3	31	29	31	29	3	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719173904	3	148471619	AT	A	360	PASS	-	-	-	-	-	Del	-	D	148471619	148471621	1	15	323.623	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	4	3	6	29	19	29	19	3	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719179563	3	168508568	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	168508568	168508578	1	12	320.01	-	-	9	1	1	-	-	./.	0	0	0	0	25	24	26	24	0	0	./.	1	5	1	7	34	36	35	36	1	7	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719201542	4	41217513	TAC	T	269	PASS	APBB2	CCDS3837.1	r.?	-	-	Del	upstream	D	41217513	41217531	2	6	265.99	-	-	8	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	APBB2|CCDS3837.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	10	10	10	0	0	./.	0	5	0	5	23	22	23	22	0	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719206659	4	59668692	TG	T	360	PASS	-	-	-	-	-	Del	-	D	59668692	59668694	1	15	323.523	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	4	2	35	21	35	21	4	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719225642	4	127354972	TA	T	300	PASS	-	-	-	-	-	Del	-	D	127354972	127354977	1	12	269.603	-	-	4	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	6	4	23	26	23	26	6	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719226954	4	132140526	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	132140526	132140536	1	6	265.99	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	0	5	0	5	33	40	33	40	0	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719232464	4	152721953	CTT	C	269	PASS	-	-	-	-	-	Del	-	D	152721953	152721957	2	12	268.399	-	-	3	1	-	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	3	5	15	21	15	21	3	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719242087	4	182888142	ATC	A	269	PASS	-	-	-	-	-	Del	-	D	182888142	182888159	2	12	255.153	-	-	8	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	3	2	3	2	33	25	33	25	3	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719253541	5	23462584	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	23462584	23462594	1	20	352.064	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	5	4	31	31	31	31	5	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719257830	5	36370599	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	36370599	36370608	1	24	409.067	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	3	6	6	31	36	31	36	6	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719265482	5	67180314	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	67180314	67180320	1	15	320.347	-	-	5	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	2	5	2	28	27	28	27	5	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719270683	5	85368110	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	85368110	85368113	1	15	320.347	-	-	2	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	2	6	4	26	25	26	25	6	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719281491	5	126337747	TA	T	420	PASS	MARCH3	CCDS4141.1	r.?	-	-	Del	intronic	D	126337747	126337750	1	18	377.952	-	-	2	1	1	MARCH3|CCDS4141.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MARCH3|CCDS4141.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	2	5	3	5	22	25	22	25	3	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719285193	5	141105319	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	141105319	141105336	2	6	268.16	-	-	8	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	5	0	5	0	47	14	47	14	5	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719285692	5	142634375	C	CGG	389	PASS	-	-	-	-	-	Ins	-	I	142634375	142634379	2	8	353.87	-	-	3	1	1	-	-	./.	0	0	0	0	7	9	7	10	0	0	./.	7	0	11	0	24	20	24	20	11	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719290226	5	159546014	CG	C	449	PASS	PWWP2A	CCDS47332.1	r.438delC	c.381delC	p.E128fs*12	Del	frameshift	D	159546014	159546018	1	21	418.098	-	-	3	1	1	PWWP2A|CCDS47332.1|r.438delC|c.381delC|p.E128fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PWWP2A|CCDS47332.1|r.438delC|c.381delC|p.E128fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	17	11	17	0	0	./.	2	6	4	6	22	24	22	24	4	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719309177	6	35569497	A	AGG	329	PASS	FKBP5	CCDS4808.1	r.?	-	-	Ins	intronic	I	35569497	35569501	2	12	314.955	-	-	3	1	1	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	7	19	7	0	0	./.	1	5	2	5	19	27	20	27	2	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719316746	6	61898620	GTT	G	261	PASS	-	-	-	-	-	Del	-	D	61898620	61898626	2	10	485.978	-	-	5	1	1	-	-	./.	0	0	0	0	68	63	68	63	0	0	./.	0	9	0	10	109	134	109	134	0	10	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719340082	6	148125809	GA	G	300	PASS	-	-	-	-	-	Del	-	D	148125809	148125817	1	12	269.988	-	-	7	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	2	3	4	4	21	22	21	22	4	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719349424	7	7184354	TC	T	420	PASS	-	-	-	-	-	Del	-	D	7184354	7184356	1	18	378.031	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	2	5	2	6	26	31	26	31	2	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719350006	7	9356241	GA	G	300	PASS	-	-	-	-	-	Del	-	D	9356241	9356247	1	6	270.022	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	0	8	0	28	32	28	32	8	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719373926	7	87154186	G	GA	360	PASS	ABCB1	CCDS5608.1	r.?	-	-	Ins	intronic	I	87154186	87154192	1	16	318.006	-	-	5	1	1	ABCB1|CCDS5608.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCB1|CCDS5608.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	8	22	8	0	0	./.	3	3	4	5	29	25	29	25	4	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719381036	7	112227071	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	112227071	112227077	1	12	265.808	-	-	5	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	6	2	25	24	25	25	6	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719390045	7	143217703	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	143217703	143217704	1	18	473.397	-	-	0	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	8	1	8	1	26	18	26	18	8	1	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719398921	8	11543823	TAA	T	420	PASS	-	-	-	-	-	Del	-	D	11543823	11543827	2	20	378.522	-	-	3	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	3	4	6	4	29	27	29	27	6	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719403157	8	24076041	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	24076041	24076043	1	12	267.363	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	3	2	22	20	22	20	3	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719415499	8	70975199	TG	T	480	PASS	PRDM14	CCDS6206.1	r.?	-	-	Del	intronic	D	70975199	70975201	1	24	432.597	-	-	1	1	1	PRDM14|CCDS6206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDM14|CCDS6206.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	3	6	26	34	26	34	3	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719415785	8	71871166	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	71871166	71871182	2	10	270.373	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	1	5	20	16	20	16	1	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719442288	9	20007166	TAAA	T	389	PASS	-	-	-	-	-	Del	-	D	20007166	20007173	3	18	378.982	-	-	6	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	2	5	3	5	22	37	22	37	3	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719444620	9	29379399	GT	G	360	PASS	-	-	-	-	-	Del	-	D	29379399	29379401	1	7	322.433	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	6	0	6	0	24	17	24	17	6	0	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719453084	9	76193136	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	76193136	76193143	1	20	373.563	-	-	6	1	1	-	-	./.	0	0	0	0	13	18	14	18	0	0	./.	4	3	5	3	28	30	28	30	5	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719454446	9	80821910	CA	C	292	PASS	-	-	-	-	-	Del	-	D	80821910	80821912	1	24	431.918	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	5	4	6	25	30	26	30	5	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719470692	9	137268473	T	TCTCAGAGAACCAGTGAGACCTGTGCCGCGTCCTCTGTCTATAGAAGGTGATGCTTAGGGAGCA	290	PASS	RXRA	CCDS35172.1	r.?	-	-	Ins	intronic	I	137268473	137268499	63	27	159.696	-	-	0	1	1	RXRA|CCDS35172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RXRA|CCDS35172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	12	8	0	0	./.	8	2	0	0	22	25	30	27	8	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719476232	X	22446820	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	22446820	22446827	1	30	481.636	-	-	6	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	4	5	4	5	30	28	32	28	4	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719476572	X	23833946	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	23833946	23833964	2	12	269.716	-	-	8	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	2	3	4	3	27	17	27	17	4	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719477348	X	27222035	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	27222035	27222042	1	24	428.656	-	-	6	1	1	-	-	./.	0	0	0	0	27	7	29	7	0	0	./.	5	3	6	5	27	28	27	28	6	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719478274	X	31166356	TTA	T	360	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	31166356	31166360	2	15	325.104	-	-	1	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	2	6	3	29	22	29	22	6	3	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719481447	X	46740898	A	ATAT	360	PASS	RP2	CCDS14270.1	r.2908_2909insuau	c.?	p.?	Ins	3'UTR variant	I	46740898	46740924	3	16	313.665	-	-	8	1	-	RP2|CCDS14270.1|r.2908_2909insuau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	RP2|CCDS14270.1|r.2908_2909insuau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	7	7	7	7	0	0	./.	3	3	6	4	12	16	14	16	6	4	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719485876	X	75061982	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	75061982	75061983	1	20	375.074	-	-	0	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	4	4	6	30	31	32	31	4	6	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719491925	X	103001159	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	103001159	103001169	1	20	372.666	-	-	9	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	3	4	3	5	29	35	29	35	3	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719495812	X	124326060	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	124326060	124326070	1	12	319.686	-	-	9	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	5	1	6	2	37	21	37	21	6	2	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719495955	X	124904812	GA	G	480	PASS	-	-	-	-	-	Del	-	D	124904812	124904815	1	25	433.472	-	-	2	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	4	4	5	16	36	16	36	4	5	1	1	1	1	1	1	1	1
2662664	PD18233a	PD18233b	2719500233	X	144692728	AT	A	360	PASS	-	-	-	-	-	Del	-	D	144692728	144692738	1	12	324.502	-	-	9	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	5	1	9	1	26	30	26	30	9	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727282023	1	7482754	G	GCTGT	329	PASS	CAMTA1	CCDS30576.1	r.?	-	-	Ins	intronic	I	7482754	7482759	4	16	304.53	-	-	1	1	1	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CAMTA1|CCDS30576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	3	4	3	26	11	26	11	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727283495	1	12541471	T	TTA	449	PASS	VPS13D	CCDS30588.1	r.?	-	-	Ins	intronic	I	12541471	12541481	2	21	418.683	-	-	4	1	1	VPS13D|CCDS30588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13D|CCDS30588.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	15	18	0	0	./.	2	6	2	6	22	29	22	29	2	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727290119	1	33475575	CAG	C	282	PASS	AK2	CCDS373.1	r.1594_1595delCU	c.?	p.?	Del	3'UTR variant	D	33475575	33475578	2	9	430.122	-	-	1	1	1	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	AK2|CCDS373.1|r.1594_1595delCU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	18	17	18	0	0	./.	8	0	8	0	34	28	34	28	8	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727294762	1	51547050	ATTCCT	A	540	PASS	-	-	-	-	-	Del	-	D	51547050	51547057	5	30	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	4	5	4	6	19	23	19	23	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727294887	1	51978162	C	CA	300	PASS	EPS15	CCDS557.1	r.?	-	-	Ins	intronic	I	51978162	51978172	1	12	265.816	-	-	9	1	1	EPS15|CCDS557.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPS15|CCDS557.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	5	6	29	21	29	21	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727296706	1	57847378	TCCA	T	329	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	57847378	57847383	3	15	322.591	-	-	1	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	2	4	3	8	18	36	18	36	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727297293	1	59960698	CT	C	420	PASS	FGGY	CCDS44155.1	r.?	-	-	Del	intronic	D	59960698	59960704	1	14	372.744	-	-	5	1	1	FGGY|CCDS44155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGGY|CCDS44155.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	20	26	20	0	0	./.	6	1	8	5	28	38	28	39	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727297777	1	61897625	CAAAGTACAGGGAATAA	C	290	PASS	NFIA	CCDS44156.1	r.?	-	-	Del	intronic	D	61897625	61897645	16	35	535.846	-	-	1	1	1	NFIA|CCDS44156.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFIA|CCDS44156.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	4	6	5	29	27	29	27	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727298518	1	63593385	GT	G	480	PASS	-	-	-	-	-	Del	-	D	63593385	63593392	1	21	430.122	-	-	6	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	6	2	7	5	37	22	37	22	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727300292	1	69116789	CTCTCTTTGTCACTTTCATGAGAAGAAAAGTAAATCTCACATGCTTTTGCCCAAACCAGACTAACATGTGGGACACTTGGAGATTCTTTCAGGGCCATCTACTTACACATCTTCTTCAGGCAGTGCTTCTTCAATGATCTGCCTTTTCCTTTCTCACCTTCAATTCCCGGGCTGATTTACATGTAAATTTATGCTCTCTAACCCAAGCTGAGCCCTTAGTACCACTTTCAATGCTTTGACTTGTCTTTGGTTCACTCCTTCTCCTATTGACTCACTGATTGTTGCAAGTATGCATCTCTCTCCTTACTTCTCTTGTTCCTAGTCTTACTAGATAGCATATCTTTCTTTTGAACAAAAATTGAAGATATCAATCAAAAACTTCCTCAACTTCTCTTTTTCTCTATTATTTCCTCAGAAGTGTCATAGGAACTGTATGCATTGACAAGGAAGAGTAAGATATGGTTCCTGAATTTATGGAATTAAAAACATATGCTCAAGTACAAAATGAGGGCTATATGCAGTACATGCTAAAGTTTGTAATGATAACAACAAAAATTTGTATAGAGTTATAGAAACCTTAACTACGTTATTTTTTTATGCGTACAACCACTTGGAAGATGAGTATAATTATTACCATCATTATAAAGATGAGTAAACTGAGGCTTAGAGATACAGTGTAATTTGACAAAGATGCCTATTAAAAAATAGCAGAATCAGGACTTGCAGTGGTGTCTGACTTGTAAAAAATAATAGACTCTCCTGTGAACCTATGTGCGATATTTTGCTAACATTTTGTTGACTCTGTTCTCTGCCTCCTGTCTTGGCCCAAATCTGGATGAATGTAAGTCCAGGCAAGCAATCCTAGCAGCAGGCTACAGATATTGCCTTGAACTTTATTCAAAGCAACAGTAACATGTATGTCTGTCTTTTCTCCACCCTGGATTTCTCATTTCTAGGGATCCTTTCCAAGCAGCAAAGTAGAAATAGATTAGATGGGACAACATGGATATATTATATATGAATTATTAACCCTACTTCTGACTAGTAGCAGGAGAAACAAAATGTCAGCAGAAGCTGGAAGCTTCTTCAAACACACAAGCTAAAATTAATCTTTTTTTCATACATAAGTCAGTTTTTTAAATGGCCTATTCCTTTGTCAGGGATACAAACTCTTTCCCAAATCTTCTCATGGTTGGAACCTACTTGTCCTTGTGAGGTTGTCTCACTTTTTACTTATTTTAATTGCATGCATTTTTAAAAATTTTATTCCCATTATCGTTAGGTGAGGTTCCCCTTTCACAAATATCTGAAAAAGGAATATGTTCAGTGCAGCTTTGATCAATATGTTTATATCTATCTAGTAGGAAATTCATTATATGCACAGCTACCATCACTCCCGTAGTTTAAAAAAAAACGCAACCCACTAAAAAGTACAGCCGGATTTCTCTCCTTATTTGACTCTATCTTCCCTAAAGTTTGTCTAAACTGAATGTCTCCGTCTGAATTTACTACATAACTCCTTCTAATTCTACCAGCTAACTTGATGCCTTCCTCTCATCTTCTCCCATAGATTATCCTTCTGATCAATATTTCCCACTTAGCATTCTTAGTCGAGCATAGTCTCAGATTGCATAAACCACCCTCTAATTGAAAGTTATACCCTTATGAGAGCTACATTTCTTATAGACCTGACAGCTTAGTATTTTGTGTTAAGATTTTTTGTTTTCACTTAGTAATAGAGGCTCGAGTGTTTTTCATCAGCTTCCAAAGTACTTACTTTTCAACTGGGGACTTTCTTATGAGAAGGGACAAGGACTATCTACTTCTTTCGAGTTTTTTGGAGGGTTTGAGTCACCTGTGAACTCCAGAACCAAAAATAATTTTCAAAAATGGAAAATATTCAGTTTGTTGTCACATCCTTTATTTATAGGAATAAGTTGCCATCCTAAAACTGCAGGTCTGCAAGGTCTCTTTAACCTTTCCACTTCAACGAAAACATATCCTGAGTAGCAGTTTCTGAAAACAGTATCTGTGCAATGACTACTGTAGAAAAAATAATTTTGGAAGAAGAAAGGAAGCAGGATATTATGCACACCCTCTGAATTCCTAAAACATCATTTAAAAATAGGAGTTCTTAGCCAGAGGAACCCTGTCTGCTTAGAGAGAGTCCTTGCACGTGTAGTAGTCAACTGGTGTAAAAACTAGATTTTCTTCTATGTCAAATTCTCTGCTATATGAAATTGTTTTGTGCAGTAAGAATGGACTCAGTGGTTTATTGGTTATAATGAAAGGCACAGCCTCGGGGAGCACCTCCTTAAGTTGAGGTGAAGTGAAGGGCTGACAGTTTTTACATGGAAAGTGAATATTATAAAGAATGCCAGAGAGCTCCTCAGGGCACTCTGCATGTACATTTTGCTTCAGATTACTTTCTTGTGGAAGCACAGTCTAAGCATTCTACTTTCTCAATTCTAGAAGCTCTGAACAGGGGGCAACCATGCTTTGCTCTACAAGTCAGTAATGTGTGTGTGTGTGTGTGTATGTGTGTGTGCATATGTGTGTTTTCATGTATGTACCATTTTTACTCTCATTGATTTGTGAGGCTTTGTGATGCGGGACACAAAAAGAAAACTTCAAATCTTTAATTATTCTGGCTTTCAGAGTCTTACACTTAGACCAAAGCAGAAGCTAAATTTGATAGTTCTCTGGTTAGAAGGATGGGTTGGTCCCCAAGGTATTAATATGATTTTCCTGATGCGTTTGATACTATATTGTATTTTTTGAGAATACTTGGCTTGGTATTCATTCATGTAGACACAGTTATCCTTCATGAAAGTTAGGCACAGGAATAAAAAAAGTGGTTTAGAGTATGTAGTGTGGAATTAAATCATTCAAATTAATCAGGGATAATAAAAGTTCAAACAGAAGAAAAAAGTGTAACATTCTTAAAGGGCATCTAGCATTCTTAAGACTTACCTGAACCAGTTGCGTAATCTGCCTAATTCACATTCATGAATTAGCAGACGAGGACTGGTAGAATACATAATTTGAAACTGGAGAGTCCTAAGCTGGAATATCAATTCTTCTATTTATCAATAAAAAGTTCTTGAACAAAGTAAGCAAACTTTCTGGGCACCACTGTCCTCATCTGTGGAAAGAGAAAAAATAATGAATATTTACTTGAGTTTTTGTATGAAATATTGTAATACCTTCAAAGTTCCAACTGCCTATCTCACAGCAGGTATTTAGAAATATTACTTATATCATCCACTGTCAGAAAAATCTAGTATTGCTTTGTTTTAGCATATCTATTGTAAAATTCTTAAGGGCTTATATTTTAATAAAGTTAAATTCTTAAAATTAACTTCTCTAAGAGGATATATAAATAGTCAAGTTAACATCATGCACCTAAATTTGAAGGTCTTCTAACACATCTTCCAAAAATAAACATCAAGTAAAGCAGAGGTTAGTAAATTGTTTTTCTGTAAAGGGATTAATAATTGAGGATTTTGGGCCATAGCG	C	261	PASS	-	-	-	-	-	Del	-	D	69116789	69120313	3518	28	483.887	-	-	1	1	-	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	3	6	0	0	25	25	28	31	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727300471	1	69796353	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	69796353	69796369	2	10	268.826	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	1	4	1	4	32	26	32	26	1	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727301844	1	74130851	TATTCTC	T	261	PASS	-	-	-	-	-	Del	-	D	74130851	74130860	6	28	481.479	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	6	3	6	5	27	31	27	31	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727301884	1	74259161	CA	C	420	PASS	-	-	-	-	-	Del	-	D	74259161	74259165	1	20	375.755	-	-	3	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	3	4	3	4	18	21	18	21	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727302079	1	74869108	ACATTTGTTCTCTCCCGTGTTACTGCCAAACTTTCAGTATGTCAATACTAATTAAATTAGACATCATTGAACATAAAGTGGGGTT	A	261	PASS	TNNI3K	CCDS44161.1	r.?	-	-	Del	intronic	D	74869108	74869195	84	24	482.683	-	-	1	1	1	TNNI3K|CCDS44161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNNI3K|CCDS44161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	7	2	0	0	33	26	40	28	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727302284	1	75672971	AACTATAAGGC	A	290	PASS	SLC44A5	CCDS667.1	r.?	-	-	Del	intronic	D	75672971	75672984	10	36	537.652	-	-	1	1	1	SLC44A5|CCDS667.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC44A5|CCDS667.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	5	5	5	6	32	29	32	29	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727302524	1	76492214	GGGGGC	G	478	PASS	-	-	-	-	-	Del	-	D	76492214	76492222	5	30	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	5	4	6	4	32	22	32	22	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727302552	1	76554718	ATTTTG	A	329	PASS	ST6GALNAC3	CCDS672.1	r.?	-	-	Del	intronic	D	76554718	76554728	5	7	322.591	-	-	1	1	1	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	19	2	19	0	0	./.	0	6	0	7	7	27	7	27	0	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727303869	1	81032510	GTTGATGATGTTCC	G	261	PASS	-	-	-	-	-	Del	-	D	81032510	81032526	13	18	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	8	1	7	1	37	19	38	19	8	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727304372	1	82449512	C	CT	540	PASS	LPHN2	CCDS689.1	r.?	-	-	Ins	intronic	I	82449512	82449522	1	30	477.264	-	-	9	1	1	LPHN2|CCDS689.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LPHN2|CCDS689.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	15	12	0	0	./.	5	4	9	5	28	35	28	36	9	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727305487	1	85760032	CCCCAGGATTGAAG	C	348	PASS	-	-	-	-	-	Del	-	D	85760032	85760046	13	48	644.581	-	-	1	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	7	5	7	5	36	28	36	28	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727307484	1	92062632	ACATCTG	A	290	PASS	-	-	-	-	-	Del	-	D	92062632	92062641	6	35	536.448	-	-	1	1	1	-	-	./.	0	0	0	0	10	23	10	23	0	0	./.	4	6	4	7	29	26	30	26	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727308399	1	94542270	GA	G	300	PASS	ABCA4	CCDS747.1	r.?	-	-	Del	intronic	D	94542270	94542273	1	10	267.622	-	-	2	1	1	ABCA4|CCDS747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCA4|CCDS747.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	1	4	4	6	25	26	25	26	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727308528	1	95039424	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	95039424	95039434	1	16	318.979	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	3	3	3	3	28	45	28	45	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727309321	1	97506948	AC	A	720	PASS	-	-	-	-	-	Del	-	D	97506948	97506950	1	49	641.57	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	6	6	7	6	33	24	33	24	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727309452	1	97954189	TCAGACACCA	T	348	PASS	DPYD	CCDS30777.1	r.?	-	-	Del	intronic	D	97954189	97954199	9	40	641.57	-	-	1	1	1	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	3	9	5	9	32	33	32	33	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727312065	1	106095725	GATGTA	G	629	PASS	-	-	-	-	-	Del	-	D	106095725	106095732	5	42	591.418	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	6	7	6	20	38	20	38	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727313491	1	111188616	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	111188616	111188626	1	10	265.816	-	-	9	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	4	1	9	3	43	23	43	23	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727314037	1	113048620	A	AT	420	PASS	WNT2B	CCDS847.1	r.?	-	-	Ins	upstream	I	113048620	113048629	1	20	370.336	-	-	8	1	1	WNT2B|CCDS847.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	WNT2B|ENST00000256640|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	9	12	0	0	./.	3	4	4	6	22	33	22	33	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727314655	1	114866182	AG	A	360	PASS	-	-	-	-	-	Del	-	D	114866182	114866184	1	7	318.979	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	6	0	10	1	41	33	41	33	10	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727315112	1	116548676	T	TGATTA	449	PASS	SLC22A15	CCDS44198.1	r.?	-	-	Ins	intronic	I	116548676	116548684	5	24	404.233	-	-	1	1	1	SLC22A15|CCDS44198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC22A15|CCDS44198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	3	7	3	39	28	39	28	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727315361	1	117587582	TA	T	389	PASS	-	-	-	-	-	Del	-	D	117587582	117587588	1	20	376.357	-	-	5	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	4	3	4	4	34	33	34	33	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727316348	1	121189486	GC	G	360	PASS	-	-	-	-	-	Del	-	D	121189486	121189489	1	12	322.591	-	-	2	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	5	1	6	1	25	21	25	21	6	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727319584	1	145592066	A	AC	360	PASS	POLR3C	CCDS921.1	r.?	-	-	Ins	downstream	I	145592066	145592067	1	15	318.377	-	-	0	1	1	POLR3C|CCDS921.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NUDT17|CCDS30830.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	14	7	15	0	0	./.	4	2	4	6	27	28	29	28	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727320676	1	149224894	TA	T	420	PASS	RNU1-5	ENST00000384010	r.?	-	-	Del	upstream	D	149224894	149224898	1	18	376.357	-	-	3	1	1	RNU1-5|ENST00000384010|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	RNU1-5|ENST00000384010|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	55	57	55	57	0	0	./.	5	2	7	3	94	90	94	90	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727321785	1	152104758	CA	C	600	PASS	-	-	-	-	-	Del	-	D	152104758	152104760	1	32	535.846	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	7	4	8	26	35	26	35	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727321926	1	152590799	C	CT	420	PASS	LCE3B	CCDS1016.1	r.?	-	-	Ins	downstream	I	152590799	152590803	1	14	372.142	-	-	3	1	1	LCE3B|CCDS1016.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	LCE3B|CCDS1016.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	24	10	25	0	0	./.	1	6	3	7	41	56	41	57	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727321992	1	152857282	TG	T	600	PASS	SMCP	CCDS1029.1	r.535delG	c.?	p.?	Del	3'UTR variant	D	152857282	152857287	1	36	532.836	-	-	4	1	1	SMCP|CCDS1029.1|r.535delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SMCP|CCDS1029.1|r.535delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	12	11	12	0	0	./.	5	5	7	7	30	35	30	35	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727321993	1	152862376	TCTTCTGCAG	T	435	PASS	SMCP	CCDS1029.1	r.?	-	-	Del	downstream	D	152862376	152862390	9	60	803.468	-	-	1	1	1	SMCP|CCDS1029.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SMCP|CCDS1029.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	16	9	16	0	0	./.	4	11	5	11	37	33	37	33	5	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727323994	1	158592136	ATTTAG	AAT	329	PASS	SPTA1	CCDS41423.1	r.?	-	-	Complex	intronic	DI	158592137	158592141	5	15	0	-	-	0	1	-	SPTA1|CCDS41423.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	SPTA1|CCDS41423.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	4	0	0	23	21	23	21	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727324234	1	159374733	GT	G	449	PASS	OR10J1	ENST00000328408	r.?	-	-	Del	intronic	D	159374733	159374738	1	25	428.918	-	-	4	1	1	OR10J1|ENST00000328408|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OR10J1|ENST00000328408|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	4	4	6	4	40	36	40	36	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727324368	1	159935790	TATACAACATATTATTA	TAACTAAA	261	PASS	-	-	-	-	-	Complex	-	DI	159935791	159935806	16	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	7	2	0	0	40	21	40	21	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727326840	1	166896841	ACAGGT	A	416	PASS	ILDR2	CCDS1256.1	r.?	-	-	Del	intronic	D	166896841	166896847	5	30	479.673	-	-	1	1	1	ILDR2|CCDS1256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ILDR2|CCDS1256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	4	21	4	0	0	./.	5	4	5	4	39	30	39	30	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727326960	1	167282909	GCAGGATTTGATGAA	G	319	PASS	POU2F1	CCDS1259.1	r.?	-	-	Del	intronic	D	167282909	167282927	14	40	590.815	-	-	1	1	1	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	4	7	4	7	34	42	34	42	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727327077	1	167585302	AG	A	360	PASS	-	-	-	-	-	Del	-	D	167585302	167585304	1	7	313.561	-	-	1	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	0	6	0	8	26	34	26	34	0	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727327974	1	170211008	TC	T	600	PASS	-	-	-	-	-	Del	-	D	170211008	170211010	1	27	537.652	-	-	1	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	8	2	9	2	40	36	40	36	9	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727328583	1	171947173	TC	T	540	PASS	DNM3	CCDS44276.1	r.?	-	-	Del	intronic	D	171947173	171947176	1	30	480.877	-	-	2	1	1	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNM3|CCDS44276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	4	6	4	37	44	37	44	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727328881	1	172944963	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	172944963	172944973	1	28	470.642	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	11	0	0	./.	6	3	10	6	38	38	38	38	10	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727330223	1	176897511	TA	T	540	PASS	ASTN1	CCDS1319.1	r.?	-	-	Del	intronic	D	176897511	176897519	1	24	483.887	-	-	7	1	1	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	4	16	4	0	0	./.	7	2	9	2	48	11	48	11	9	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727330394	1	177754805	ATTAACACATG	A	261	PASS	-	-	-	-	-	Del	-	D	177754805	177754820	10	28	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	3	5	3	40	35	40	35	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727330572	1	178376041	GTTTATTAAT	G	290	PASS	RASAL2	CCDS1322.1	r.?	-	-	Del	intronic	D	178376041	178376053	9	27	537.652	-	-	1	1	1	RASAL2|CCDS1322.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASAL2|CCDS1322.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	0	11	0	0	0	./.	8	2	11	1	36	11	36	12	11	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727331378	1	180132404	CTACTT	C	387	PASS	QSOX1	CCDS1337.1	r.?	-	-	Del	intronic	D	180132404	180132412	5	24	428.918	-	-	1	1	1	QSOX1|CCDS1337.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	QSOX1|CCDS1337.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	3	5	3	5	42	58	42	58	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727331821	1	181224602	AACCCCCAAATCTCAGGGGC	A	348	PASS	-	-	-	-	-	Del	-	D	181224602	181224622	19	48	645.183	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	7	5	6	5	40	23	41	23	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727332573	1	183697960	AGAC	A	600	PASS	RGL1	CCDS1359.1	r.?	-	-	Del	intronic	D	183697960	183697966	3	32	537.652	-	-	1	1	1	RGL1|CCDS1359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RGL1|CCDS1359.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	7	3	10	28	36	28	36	3	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727332712	1	184133520	TA	T	300	PASS	-	-	-	-	-	Del	-	D	184133520	184133525	1	10	268.826	-	-	4	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	2	4	22	31	22	31	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727333242	1	186103956	CTGCTCTCATCCCATCA	C	406	PASS	HMCN1	CCDS30956.1	r.?	-	-	Del	intronic	D	186103956	186103978	16	60	752.713	-	-	1	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	9	5	9	35	49	35	49	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727333851	1	187909997	TCTCAAACTCCTGAC	T	290	PASS	-	-	-	-	-	Del	-	D	187909997	187910016	14	36	535.846	-	-	1	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	5	5	5	5	35	38	35	38	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727334293	1	188908040	AACTTAACTTG	A	261	PASS	-	-	-	-	-	Del	-	D	188908040	188908057	10	28	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	3	6	5	34	38	34	38	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727335127	1	191136091	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	191136091	191136101	1	16	309.948	-	-	9	1	1	-	-	./.	0	0	0	0	26	17	26	18	0	0	./.	3	3	3	3	50	53	51	54	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727335281	1	191498716	ATAATTAGAGT	AAGTG	261	PASS	-	-	-	-	-	Complex	-	DI	191498717	191498726	10	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	5	4	0	0	39	28	39	28	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727336403	1	194872055	TCATTGATTCACAG	T	261	PASS	-	-	-	-	-	Del	-	D	194872055	194872073	13	30	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	5	4	5	37	35	37	35	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727336787	1	196014052	TC	T	540	PASS	-	-	-	-	-	Del	-	D	196014052	196014054	1	28	483.887	-	-	1	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	6	6	8	47	50	47	50	6	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727337422	1	198160527	CTGATT	C	507	PASS	NEK7	CCDS1394.1	r.?	-	-	Del	intronic	D	198160527	198160535	5	35	537.652	-	-	1	1	1	NEK7|CCDS1394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NEK7|CCDS1394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	4	6	4	40	33	40	33	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727337504	1	198318148	CA	C	480	PASS	-	-	-	-	-	Del	-	D	198318148	198318158	1	25	430.122	-	-	9	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	4	4	5	9	28	31	28	31	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727339198	1	202804375	GTCTGCATGGTTCATGCAGATTGCGACAACCTAGACCCTGCCTGAGGTACAGCTCCTGGGTCACCTCATGCAACCAAAGGTGGGCGTCTCGGGGAGGTTCCCACCAGCGCAGGGAGGTGGCTTCTGAGCAACCTCACTAAAGTCTCCACCAAATTGCCAGCAGGGCCCAGGCCTTTCCCTGACTGTCCCAGCTCTCTCAATGCAATGAATCTGGGAAACCCAAACATCCTGCCCCTCTTACCCCATCAGACCTGCCCTTCCAGGGATATGGCTTTCCCTCACCCAGGGAAAAGGCTGAGGGGGCCTCAGGCTGCTGTGGGGGACATGGGTGTCCTCCTTTCTTGGTGACCAGCAATTTGACTTTGGCCAGTGTGAAGAGTGGGGCTCTGATGGGGGTGTGGGAGGAGGAAATGAAGTGGGAGCACAGCCCGCCCCCATCC	G	261	PASS	-	-	-	-	-	Del	-	D	202804375	202804818	439	28	473.05	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	3	0	0	27	31	33	34	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727342362	1	212725166	CCTCAGTGCTTCTGTCTCGGGGTTGTTGTTGTCCCCTTTCCTCTCT	C	290	PASS	-	-	-	-	-	Del	-	D	212725166	212725214	45	35	537.05	-	-	1	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	6	4	0	1	21	24	27	27	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727342469	1	213047244	TTAATC	T	633	PASS	FLVCR1	CCDS1510.1	r.?	-	-	Del	intronic	D	213047244	213047254	5	56	698.948	-	-	1	1	1	FLVCR1|CCDS1510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLVCR1|CCDS1510.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	6	8	6	41	49	41	49	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727343356	1	215880311	TACTTAATTAAAAATAAAAACA	T	319	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	215880311	215880337	21	42	591.418	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	6	5	5	29	38	29	39	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727345018	1	221203736	TATA	T	718	PASS	-	-	-	-	-	Del	-	D	221203736	221203744	3	56	692.927	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	7	11	7	39	40	39	40	11	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727346737	1	227034633	GGTGCCTT	G	290	PASS	-	-	-	-	-	Del	-	D	227034633	227034642	7	27	535.244	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	8	2	9	3	33	33	33	33	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727348395	1	232472119	GTTA	G	540	PASS	-	-	-	-	-	Del	-	D	232472119	232472125	3	30	482.683	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	4	7	4	35	27	35	27	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727348429	1	232626666	TTGGAAGCCT	TCA	377	PASS	SIPA1L2	CCDS41474.1	r.2110_2118delAGGCUUCCAinsug	c.1751_1759delAGGCTTCCAinsTG	p.Q584fs*18	Complex	frameshift	DI	232626667	232626675	9	54	0	-	-	0	1	1	SIPA1L2|CCDS41474.1|r.2110_2118delAGGCUUCCAinsug|c.1751_1759delAGGCTTCCAinsTG|p.Q584fs*18|protein_coding:CDS:exon:indel:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:1000032:SO:0001589	SIPA1L2|CCDS41474.1|r.2110_2118delAGGCUUCCAinsug|c.1751_1759delAGGCTTCCAinsTG|p.Q584fs*18|protein_coding:CDS:exon:indel:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:1000032:SO:0001589	./.	0	0	0	0	11	14	11	14	0	0	./.	5	8	0	0	26	29	26	29	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727349746	1	236483518	AT	A	420	PASS	-	-	-	-	-	Del	-	D	236483518	236483522	1	20	376.357	-	-	3	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	4	5	6	32	43	32	43	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727350481	1	238159560	CACC	CTT	416	PASS	-	-	-	-	-	Complex	-	DI	238159561	238159563	3	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	5	0	0	32	39	32	39	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727351636	1	241011465	AG	A	600	PASS	RGS7	CCDS31071.1	r.?	-	-	Del	intronic	D	241011465	241011468	1	32	537.652	-	-	2	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	7	5	9	32	37	32	37	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727355746	10	2281652	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	2281652	2281662	1	10	266.095	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	1	4	1	5	25	38	25	38	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727357104	10	5728000	TAGCAA	T	838	PASS	C10orf18	CCDS41485.1	r.?	-	-	Del	intronic	D	5728000	5728010	5	70	808.52	-	-	1	1	1	C10orf18|CCDS41485.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C10orf18|CCDS41485.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	6	9	8	11	32	39	32	39	8	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727357183	10	5852515	AG	A	449	PASS	GDI2	CCDS7071.1	r.?	-	-	Del	intronic	D	5852515	5852521	1	21	429.726	-	-	5	1	1	GDI2|CCDS7071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDI2|CCDS7071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	6	4	7	35	25	35	25	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727358410	10	8568320	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	8568320	8568330	1	12	266.697	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	3	3	3	36	24	37	24	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727359233	10	10883944	GT	G	660	PASS	-	-	-	-	-	Del	-	D	10883944	10883949	1	42	593.357	-	-	4	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	6	5	7	7	27	32	27	32	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727361219	10	15741296	C	CA	300	PASS	ITGA8	CCDS31155.1	r.?	-	-	Ins	intronic	I	15741296	15741304	1	12	265.493	-	-	7	1	1	ITGA8|CCDS31155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ITGA8|CCDS31155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	2	3	3	5	49	26	49	27	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727361751	10	17330800	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	17330800	17330807	1	20	372.774	-	-	6	1	1	-	-	./.	0	0	0	0	20	13	21	13	0	0	./.	3	4	4	6	29	33	29	33	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727362011	10	18362782	TAG	T	300	PASS	-	-	-	-	-	Del	-	D	18362782	18362785	2	12	269.708	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	3	5	16	22	16	22	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727363369	10	22401120	CCCATGACTATCTTT	C	290	PASS	ENSG00000224369	ENST00000412505	r.?	-	-	Del	intronic	D	22401120	22401138	14	35	538.211	-	-	1	1	1	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224369|ENST00000412505|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	6	4	6	4	28	31	28	31	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727364537	10	26943343	GACTC	G	260	PASS	-	-	-	-	-	Del	-	D	26943343	26943350	4	16	323.649	-	-	1	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	3	3	4	29	30	29	30	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727366561	10	31905456	ACAACAAAACAGCAAT	A	292	PASS	-	-	-	-	-	Del	-	D	31905456	31905474	15	28	485.474	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	6	3	6	2	31	25	31	25	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727368019	10	36531280	AG	A	300	PASS	-	-	-	-	-	Del	-	D	36531280	36531282	1	10	269.708	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	1	4	2	26	24	26	24	4	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727372739	10	53216264	G	GA	269	PASS	PRKG1	CCDS7244.1	r.?	-	-	Ins	intronic	I	53216264	53216274	1	12	260.677	-	-	9	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	2	3	2	3	34	39	34	39	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727372844	10	53510986	C	CTGTTTGTTTGTTTGTT	261	PASS	PRKG1	CCDS7244.1	r.?	-	-	Ins	intronic	I	53510986	53511008	16	30	398.777	-	-	5	1	-	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	5	4	4	3	39	32	40	33	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727373084	10	54301394	AC	A	600	PASS	-	-	-	-	-	Del	-	D	54301394	54301397	1	36	539.415	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	5	7	7	33	30	33	30	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727373121	10	54402435	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	54402435	54402444	1	16	319.435	-	-	8	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	3	3	5	4	41	37	41	38	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727373332	10	54926585	ACACACTTT	A	348	PASS	-	-	-	-	-	Del	-	D	54926585	54926596	8	49	646.696	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	6	6	6	27	30	27	30	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727375132	10	59724849	AG	A	540	PASS	-	-	-	-	-	Del	-	D	59724849	59724851	1	24	483.667	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	7	2	8	5	37	27	37	27	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727375797	10	61765020	ATTTATTAAACCACTAAACT	A	261	PASS	-	-	-	-	-	Del	-	D	61765020	61765043	19	28	485.474	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	6	3	6	3	37	26	37	26	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727376036	10	62461618	ACCATAAG	A	348	PASS	ANK3	ENST00000373827	r.?	-	-	Del	intronic	D	62461618	62461627	7	45	645.492	-	-	1	1	1	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	8	5	9	31	35	31	36	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727377117	10	65816688	GTAGATGTGGCAGATGTGAT	G	290	PASS	-	-	-	-	-	Del	-	D	65816688	65816710	19	35	538.211	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	4	5	2	28	38	29	40	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727377198	10	66206249	TTGTTTTTCCAATATTCCACAACAACCTATCT	TTAA	261	PASS	-	-	-	-	-	Complex	-	DI	66206250	66206280	31	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	4	0	0	34	37	34	39	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727378172	10	68845918	AT	A	600	PASS	LRRTM3	CCDS7270.1	r.?	-	-	Del	intronic	D	68845918	68845927	1	36	539.415	-	-	8	1	1	LRRTM3|CCDS7270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM3|CCDS7270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	5	6	5	28	29	28	29	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727378552	10	69920198	A	AC	269	PASS	MYPN	CCDS7275.1	r.?	-	-	Ins	intronic	I	69920198	69920199	1	6	255.86	-	-	0	1	-	MYPN|CCDS7275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYPN|CCDS7275.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	9	0	0	./.	5	0	9	0	32	7	32	7	9	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727380391	10	74722217	TTTCAA	T	600	PASS	-	-	-	-	-	Del	-	D	74722217	74722225	5	20	539.415	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	1	9	1	12	37	33	37	33	1	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727384720	10	89072292	G	GA	259	PASS	-	-	-	-	-	Ins	-	I	89072292	89072296	1	8	373.376	-	-	3	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	7	0	8	0	31	23	32	23	8	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727384960	10	89984229	A	AC	600	PASS	-	-	-	-	-	Ins	-	I	89984229	89984234	1	32	532.19	-	-	4	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	7	3	9	4	28	28	29	28	9	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727386902	10	96731475	AT	A	360	PASS	CYP2C9	CCDS7437.1	r.?	-	-	Del	intronic	D	96731475	96731480	1	12	322.445	-	-	4	1	1	CYP2C9|CCDS7437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP2C9|CCDS7437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	1	5	2	6	26	30	26	30	2	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727387578	10	98854740	AAG	A	300	PASS	SLIT1	CCDS7453.1	r.?	-	-	Del	intronic	D	98854740	98854756	2	12	269.708	-	-	7	1	1	SLIT1|CCDS7453.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT1|CCDS7453.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	3	2	18	19	18	19	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727387816	10	99721187	AC	A	629	PASS	CRTAC1	CCDS31266.1	r.?	-	-	Del	intronic	D	99721187	99721189	1	36	590.948	-	-	1	1	1	CRTAC1|CCDS31266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRTAC1|CCDS31266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	8	5	9	23	36	23	36	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727390796	10	109065510	GC	G	540	PASS	-	-	-	-	-	Del	-	D	109065510	109065512	1	30	485.474	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	4	5	5	6	25	34	25	34	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727393161	10	117401961	C	CT	300	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Ins	intronic	I	117401961	117401971	1	12	259.472	-	-	9	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	3	2	4	3	22	18	22	18	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727398082	10	132773905	CTGTGGTTCTTTTCCAAAGA	C	348	PASS	-	-	-	-	-	Del	-	D	132773905	132773928	19	48	643.686	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	5	7	5	5	21	25	21	27	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727399730	11	2471403	GACTCTGTCC	G	319	PASS	KCNQ1	CCDS7736.1	r.?	-	-	Del	intronic	D	2471403	2471415	9	40	591.652	-	-	1	1	1	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	6	20	6	0	0	./.	7	4	9	6	21	25	21	25	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727403529	11	13257347	AC	A	480	PASS	-	-	-	-	-	Del	-	D	13257347	13257349	1	25	432.481	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	4	7	9	23	25	23	25	7	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727403931	11	14756026	CT	C	360	PASS	PDE3B	CCDS7817.1	r.?	-	-	Del	intronic	D	14756026	14756030	1	15	322.555	-	-	3	1	1	PDE3B|CCDS7817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE3B|CCDS7817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	2	4	2	5	24	29	24	29	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727404532	11	17145583	CAT	C	300	PASS	PIK3C2A	CCDS7824.1	r.?	-	-	Del	intronic	D	17145583	17145600	2	6	270.301	-	-	8	1	1	PIK3C2A|CCDS7824.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AC126389.1|ENST00000500523|r.596_597delAU|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	11	10	11	10	0	0	./.	0	5	0	5	17	25	17	25	0	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727405539	11	20424970	ATTTAG	A	298	PASS	PRMT3	CCDS7853.1	r.?	-	-	Del	intronic	D	20424970	20424980	5	15	324.361	-	-	1	1	1	PRMT3|CCDS7853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRMT3|CCDS7853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	6	3	45	22	45	22	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727406417	11	22918266	AAC	A	300	PASS	AC090639.1	ENST00000499625	r.?	-	-	Del	intronic	D	22918266	22918282	2	12	270.301	-	-	7	1	1	AC090639.1|ENST00000499625|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC090639.1|ENST00000499625|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	2	45	20	45	20	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727406745	11	23793552	AT	A	449	PASS	-	-	-	-	-	Del	-	D	23793552	23793557	1	25	428.267	-	-	4	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	4	4	4	7	24	39	24	39	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727407416	11	25309148	GCTT	G	356	PASS	-	-	-	-	-	Del	-	D	25309148	25309152	3	25	432.481	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	4	4	6	25	27	25	27	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727407784	11	26061507	GATTT	G	358	PASS	-	-	-	-	-	Del	-	D	26061507	26061517	4	18	378.421	-	-	2	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	5	2	5	2	35	23	35	23	5	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727408516	11	28141498	ATCTTTTTAAATTTTTTTTGAGACGGAGTC	A	261	PASS	METT5D1	CCDS31450.1	r.?	-	-	Del	intronic	D	28141498	28141530	29	30	486.542	-	-	1	1	1	METT5D1|CCDS31450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	METT5D1|CCDS31450.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	4	5	2	2	17	18	19	21	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727409602	11	32206273	AT	A	300	PASS	-	-	-	-	-	Del	-	D	32206273	32206283	1	12	264.882	-	-	9	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	6	5	19	15	19	15	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727410153	11	33874188	TGCTCTCTTAGCTCCG	T	290	PASS	-	-	-	-	-	Del	-	D	33874188	33874205	15	36	540.602	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	5	5	4	5	24	29	25	29	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727410171	11	33918526	CT	C	480	PASS	LMO2	CCDS7888.2	r.?	-	-	Del	upstream	D	33918526	33918531	1	21	430.073	-	-	4	1	1	LMO2|CCDS7888.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LMO2|CCDS7888.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	11	7	11	0	0	./.	2	6	3	7	25	34	25	34	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727410899	11	36041627	GTGCCCCGGAGTTCTGGAGGCAAGCTTTTACCTGCCAAAGT	G	261	PASS	LDLRAD3	CCDS31462.1	r.?	-	-	Del	intronic	D	36041627	36041671	40	28	486.542	-	-	1	1	1	LDLRAD3|CCDS31462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDLRAD3|CCDS31462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	3	6	0	3	17	27	20	31	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727411282	11	37380450	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	37380450	37380460	1	16	317.136	-	-	9	1	1	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	3	3	4	3	45	38	45	38	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727414663	11	47512473	GTGCCATCTCGGCTCACTGCAACCTC	G	261	PASS	CELF1	CCDS7939.1	r.?	-	-	Del	intronic	D	47512473	47512503	25	28	476.909	-	-	1	1	1	CELF1|CCDS7939.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CELF1|CCDS7939.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	5	17	5	0	0	./.	3	6	2	6	30	23	31	24	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727415903	11	50414564	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	50414564	50414571	1	20	374.207	-	-	6	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	3	4	5	9	28	44	28	44	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727416187	11	54945580	CAGATCCTAGAAAAAGACTGTTTCCACACAGCTGAATCAAA	C	261	PASS	-	-	-	-	-	Del	-	D	54945580	54945624	40	24	486.542	-	-	1	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	2	7	1	4	26	32	27	35	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727416358	11	55768417	TA	T	540	PASS	-	-	-	-	-	Del	-	D	55768417	55768421	1	28	486.542	-	-	3	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	3	6	7	7	38	28	38	28	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727416504	11	56271080	AG	A	365	PASS	-	-	-	-	-	Del	-	D	56271080	56271082	1	28	484.133	-	-	1	1	1	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	3	6	4	9	41	37	41	37	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727416724	11	57057460	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	57057460	57057468	1	42	587.437	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	6	5	7	33	41	33	41	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727417127	11	58445654	ATTTGATTTTCTGTT	A	290	PASS	-	-	-	-	-	Del	-	D	58445654	58445673	14	27	540.602	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	8	2	7	1	29	28	29	29	8	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727417150	11	58494587	AG	A	420	PASS	GLYAT	CCDS7970.1	r.?	-	-	Del	intronic	D	58494587	58494589	1	18	378.421	-	-	1	1	1	GLYAT|CCDS7970.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GLYAT|CCDS7970.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	17	5	17	0	0	./.	2	5	3	12	32	37	32	37	3	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727420520	11	69276421	A	AC	480	PASS	-	-	-	-	-	Ins	-	I	69276421	69276428	1	24	422.848	-	-	6	1	1	-	-	./.	0	0	0	0	26	10	26	10	0	0	./.	3	5	3	5	39	39	39	39	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727421500	11	72584744	GC	G	420	PASS	FCHSD2	CCDS8218.2	r.?	-	-	Del	intronic	D	72584744	72584746	1	18	376.615	-	-	1	1	1	FCHSD2|CCDS8218.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FCHSD2|CCDS8218.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	2	9	3	30	20	30	20	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727421736	11	73423776	T	TA	540	PASS	RAB6A	CCDS8223.1	r.?	-	-	Ins	intronic	I	73423776	73423777	1	30	479.317	-	-	0	1	1	RAB6A|CCDS8223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB6A|CCDS8223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	4	13	4	0	0	./.	5	4	7	4	23	25	23	25	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727422474	11	76084959	CACAAATA	C	261	PASS	PRKRIR	CCDS8243.1	r.?	-	-	Del	intronic	D	76084959	76084969	7	24	486.542	-	-	1	1	1	PRKRIR|CCDS8243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKRIR|CCDS8243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	7	2	7	3	32	12	32	12	8	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727422894	11	77334095	ACTG	A	658	PASS	CLNS1A	CCDS8252.1	r.?	-	-	Del	intronic	D	77334095	77334102	3	48	648.722	-	-	2	1	1	CLNS1A|CCDS8252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLNS1A|CCDS8252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	9	23	9	0	0	./.	7	5	9	5	29	16	29	16	9	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727424303	11	82697103	TGTCTAA	T	377	PASS	RAB30	CCDS8264.1	r.?	-	-	Del	intronic	D	82697103	82697112	6	44	698.568	-	-	1	1	1	RAB30|CCDS8264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB30|CCDS8264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	22	16	22	0	0	./.	10	3	10	4	30	20	30	21	10	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727425308	11	86708658	G	GC	420	PASS	AP001528.1	ENST00000499504	r.?	-	-	Ins	intronic	I	86708658	86708661	1	14	372.401	-	-	2	1	1	AP001528.1|ENST00000499504|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AP001528.1|ENST00000499504|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	1	6	2	7	11	23	11	23	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727425907	11	88512703	AT	A	540	PASS	GRM5	CCDS44694.1	r.?	-	-	Del	intronic	D	88512703	88512711	1	30	484.735	-	-	7	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	4	5	6	6	30	29	30	29	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727426548	11	90689939	ACAGT	A	449	PASS	-	-	-	-	-	Del	-	D	90689939	90689945	4	25	432.481	-	-	1	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	4	4	6	4	24	27	24	27	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727427482	11	94024228	ATATCTAGAATCTACAAGGAAC	A	261	PASS	-	-	-	-	-	Del	-	D	94024228	94024251	21	24	485.337	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	7	2	6	31	22	31	23	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727429805	11	101625640	TTAACATGTTGGATTTAGA	T	290	PASS	-	-	-	-	-	Del	-	D	101625640	101625662	18	27	539.398	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	8	2	8	2	29	19	29	19	8	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727430377	11	103696656	GA	G	629	PASS	-	-	-	-	-	Del	-	D	103696656	103696662	1	30	594.662	-	-	5	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	2	9	3	13	21	34	21	34	3	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727430636	11	104727852	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	104727852	104727853	1	15	320.749	-	-	0	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	5	4	20	24	20	24	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727433468	11	114479940	GT	G	300	PASS	-	-	-	-	-	Del	-	D	114479940	114479945	1	12	266.086	-	-	4	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	3	5	21	21	21	21	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727433560	11	114813472	TA	T	540	PASS	-	-	-	-	-	Del	-	D	114813472	114813481	1	30	486.542	-	-	8	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	4	5	6	6	22	31	22	31	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727433881	11	115708778	AGTCT	A	269	PASS	-	-	-	-	-	Del	-	D	115708778	115708786	4	10	270.301	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	1	4	2	5	17	30	17	30	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727436684	11	125416021	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	125416021	125416036	2	12	270.301	-	-	7	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	2	3	23	36	23	36	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727437206	11	127280641	AC	A	300	PASS	-	-	-	-	-	Del	-	D	127280641	127280646	1	10	269.699	-	-	4	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	1	5	3	23	20	23	20	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727438680	11	133112883	GGTCTCTGCTTTCT	G	319	PASS	ENSG00000183715	CCDS31722.1	r.?	-	-	Del	intronic	D	133112883	133112904	13	42	591.05	-	-	1	1	1	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS31722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	5	6	5	6	32	23	32	23	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727439611	12	1332877	TGTTTATTATAATA	T	406	PASS	ERC1	CCDS8508.1	r.?	-	-	Del	intronic	D	1332877	1332894	13	39	756.315	-	-	1	1	1	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	2	12	2	11	29	43	29	44	2	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727440028	12	2781519	T	TA	480	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Ins	intronic	I	2781519	2781529	1	24	427.363	-	-	9	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	5	3	8	5	45	35	45	35	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727442909	12	10173714	C	CA	269	PASS	CLEC12A	CCDS8610.1	r.?	-	-	Ins	downstream	I	10173714	10173716	1	12	267.102	-	-	1	1	1	CLEC12A|CCDS8610.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CLEC12A|CCDS8610.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	9	13	9	0	0	./.	2	3	3	3	35	22	35	22	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727443167	12	10661997	CAG	C	420	PASS	ENSG00000180574	ENST00000322446	r.?	-	-	Del	intronic	D	10661997	10662002	2	18	378.157	-	-	2	1	1	ENSG00000180574|ENST00000322446|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000180574|ENST00000322446|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	6	12	0	0	./.	2	5	2	5	29	28	29	28	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727443908	12	12339149	C	CA	329	PASS	LRP6	CCDS8647.1	r.?	-	-	Ins	intronic	I	12339149	12339157	1	15	320.523	-	-	7	1	1	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	2	4	6	4	28	24	28	24	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727445182	12	16073954	G	GT	360	PASS	DERA	CCDS44838.1	r.?	-	-	Ins	intronic	I	16073954	16073962	1	16	320.523	-	-	7	1	1	DERA|CCDS44838.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DERA|CCDS44838.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	3	3	3	5	31	36	32	36	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727445463	12	16914070	AT	A	420	PASS	-	-	-	-	-	Del	-	D	16914070	16914079	1	18	378.157	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	2	6	3	44	24	44	24	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727445538	12	17210721	TGGCATCTCTGCCA	T	290	PASS	-	-	-	-	-	Del	-	D	17210721	17210738	13	27	539.623	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	8	2	8	2	38	18	38	18	8	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727446027	12	18573683	CTG	C	569	PASS	PIK3C2G	CCDS44839.1	r.?	-	-	Del	intronic	D	18573683	18573687	2	35	540.225	-	-	1	1	1	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	6	4	7	6	42	33	42	33	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727446728	12	20287909	GTTCTGACATTT	G	377	PASS	-	-	-	-	-	Del	-	D	20287909	20287923	11	54	701.69	-	-	1	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	8	5	8	6	37	33	37	33	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727446775	12	20435093	GTCA	G	360	PASS	-	-	-	-	-	Del	-	D	20435093	20435099	3	15	324.135	-	-	1	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	4	2	5	3	33	26	33	26	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727446887	12	20757881	ATTCTGAGTTGAAAAGCCTTTAGGTGTGTTGTGATTTTCTTT	A	261	PASS	PDE3A	CCDS31754.1	r.?	-	-	Del	intronic	D	20757881	20757925	41	24	486.202	-	-	1	1	1	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE3A|CCDS31754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	7	2	3	0	19	14	23	16	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727447723	12	22942725	TTACCAGTGTTATGGGATGAGTTTTGTTCCCCTTTGCCAAATTCACATA	T	261	PASS	-	-	-	-	-	Del	-	D	22942725	22942775	48	30	486.202	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	4	2	0	32	28	34	32	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727447961	12	23654281	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	23654281	23654285	2	12	264.092	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	2	4	22	34	22	34	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727449283	12	27175447	CGCGT	C	298	PASS	MED21	CCDS8711.1	r.?	-	-	Del	upstream	D	27175447	27175454	4	12	324.135	-	-	1	1	1	MED21|CCDS8711.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MED21|CCDS8711.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	4	13	4	0	0	./.	5	1	5	1	26	13	26	13	5	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727449866	12	29001142	AAGATAG	A	319	PASS	-	-	-	-	-	Del	-	D	29001142	29001151	6	40	594.247	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	7	4	7	6	31	22	31	22	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727452472	12	38812289	TA	T	540	PASS	-	-	-	-	-	Del	-	D	38812289	38812298	1	28	485.6	-	-	8	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	6	6	11	32	38	32	38	6	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727452694	12	39704911	TATTTAA	T	319	PASS	KIF21A	CCDS31773.1	r.?	-	-	Del	intronic	D	39704911	39704920	6	42	594.247	-	-	1	1	1	KIF21A|CCDS31773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF21A|CCDS31773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	6	6	6	36	34	36	34	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727453172	12	41328095	GCTGGGCCAAA	G	261	PASS	CNTN1	CCDS8737.1	r.?	-	-	Del	intronic	D	41328095	41328108	10	24	486.202	-	-	1	1	1	CNTN1|CCDS8737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTN1|CCDS8737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	2	7	3	7	26	27	26	27	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727453461	12	42288740	CCTGTCTCAGGGCAT	C	290	PASS	-	-	-	-	-	Del	-	D	42288740	42288758	14	36	539.623	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	5	5	5	30	26	30	27	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727454360	12	45135032	AT	A	592	PASS	NELL2	CCDS8746.1	r.?	-	-	Del	intronic	D	45135032	45135037	1	27	539.021	-	-	4	1	1	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NELL2|CCDS8746.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	8	2	11	5	42	30	42	30	11	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727456091	12	50873817	ATGTCTAATGACTACTTC	A	334	PASS	LARP4	CCDS44879.1	r.?	-	-	Del	downstream	D	50873817	50873841	17	48	648.27	-	-	1	1	1	LARP4|CCDS44879.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	LARP4|CCDS44879.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	16	10	16	10	0	0	./.	5	7	6	5	37	33	37	33	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727456994	12	53380515	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	53380515	53380523	1	28	480.784	-	-	7	1	1	-	-	./.	0	0	0	0	9	29	9	29	0	0	./.	3	6	7	7	29	60	29	60	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727458515	12	57496675	GACGATGACCACCAGGGGCAGAGACAGGGCCTGAAGAGGGTGAGGACAGGGGTTTCTTTTCTTTCTTTCTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATAGTATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTAGTGCAATCTCAGCTCACTGCAGCCTCAGCCTTCAGGGCTCAAGTGATCC	G	261	PASS	STAT6	CCDS8931.1	r.1484-182_1512del211	c.1213-182_1241del211	p.?	Del	ess splice	D	57496675	57496887	211	28	484.396	-	-	1	1	-	STAT6|CCDS8931.1|r.1484-182_1512del211|c.1213-182_1241del211|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	STAT6|CCDS8931.1|r.1484-182_1512del211|c.1213-182_1241del211|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	9	12	9	12	0	0	./.	3	6	0	0	12	14	15	20	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727459871	12	61775810	G	GT	298	PASS	-	-	-	-	-	Ins	-	I	61775810	61775820	1	15	319.921	-	-	9	1	1	-	-	./.	0	0	0	0	2	13	2	13	0	0	./.	2	4	2	3	38	40	38	40	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727460114	12	62569703	TA	T	360	PASS	-	-	-	-	-	Del	-	D	62569703	62569713	1	15	324.135	-	-	9	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	4	2	7	4	22	9	22	9	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727464255	12	74674736	GGTTTAGACAAA	G	406	PASS	-	-	-	-	-	Del	-	D	74674736	74674751	11	55	755.713	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	10	4	10	5	27	34	27	34	10	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727465763	12	79674342	CCTAGGGAAAAAAACT	C	464	PASS	SYT1	CCDS9017.1	r.?	-	-	Del	intronic	D	79674342	79674360	15	77	864.36	-	-	1	1	1	SYT1|CCDS9017.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT1|CCDS9017.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	6	10	6	11	31	38	31	38	6	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727466243	12	81307577	CTATTCTGCAT	C	493	PASS	LIN7A	CCDS9021.1	r.?	-	-	Del	intronic	D	81307577	81307592	10	78	918.383	-	-	1	1	1	LIN7A|CCDS9021.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN7A|CCDS9021.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	5	12	5	13	31	37	31	37	5	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727466519	12	82273327	CAT	C	780	PASS	-	-	-	-	-	Del	-	D	82273327	82273333	2	50	702.292	-	-	2	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	9	4	10	8	35	33	35	33	10	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727466709	12	82852940	CAGATATGGCAAAAA	CTGAATTT	754	PASS	C12orf26	CCDS9024.1	r.?	-	-	Complex	intronic	DI	82852941	82852954	14	196	0	-	-	0	1	1	C12orf26|CCDS9024.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	C12orf26|CCDS9024.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	13	13	0	0	43	56	45	56	13	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727466862	12	83393401	AAG	A	300	PASS	TMTC2	CCDS9025.1	r.?	-	-	Del	intronic	D	83393401	83393421	2	12	268.306	-	-	9	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	3	3	39	39	39	39	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727467722	12	86270199	AATCATATGCTT	A	261	PASS	NTS	CCDS9029.1	r.?	-	-	Del	intronic	D	86270199	86270213	11	24	486.202	-	-	1	1	1	NTS|CCDS9029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTS|CCDS9029.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	22	10	22	0	0	./.	2	7	3	8	16	41	16	41	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727471461	12	97632920	GT	G	420	PASS	-	-	-	-	-	Del	-	D	97632920	97632922	1	20	378.157	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	4	3	6	18	29	18	29	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727472508	12	101505850	A	ATT	600	PASS	ANO4	CCDS31884.1	r.?	-	-	Ins	intronic	I	101505850	101505851	2	32	528.184	-	-	0	1	1	ANO4|CCDS31884.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANO4|CCDS31884.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	9	9	0	0	./.	7	3	9	3	35	21	35	21	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727475306	12	111601023	CAT	C	457	PASS	CUX2	CCDS41837.1	r.?	-	-	Del	intronic	D	111601023	111601029	2	25	430.976	-	-	2	1	1	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	4	4	7	4	26	28	26	28	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727475319	12	111709592	CCCAGAGAGTGGATTTTTTCTA	C	348	PASS	CUX2	CCDS41837.1	r.?	-	-	Del	intronic	D	111709592	111709623	21	33	648.27	-	-	1	1	1	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX2|CCDS41837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	10	2	10	29	28	29	28	2	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727476340	12	115355474	CGAGGTTTTATTTTGCGATTTGAGATAGGAGATATTGATGGCTTCCCCTCAATGGAGGAGAAATTGGGGATACAAGGGCAAGAACCATGTTAACTGCAGCCAGGGCTGACATTAAGTTGGGATGCATTGGTACAGCTTTATGGGTAGTTAAAACATAAGAAGACTTACCACTGTCCCACTATTCCACACTCTAAGAGAAGCATATAATTAGTCTCCCAGCCCCCAATCCCATGTATTCCTTTATGTGATTACATAAGTAATGCCTGTCATCCCCATTAGATCAGGAGCTCTGTATTGTTCAGATGCCTACATTTGGTTGTGGTTCAGAGTAGTTGCTTGTTGTAGGCATCCTCTAAGATGGCTCTCAATGACCTTGCCTTCTGGTGTCCAGGCCCTTGTATAAATCCTACCCCCCAACCCCCAATGCCACTGAAG	C	435	PASS	-	-	-	-	-	Del	-	D	115355474	115355909	434	70	809.735	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	9	0	0	34	30	40	39	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727477120	12	117384543	AGCCCCCAGTCCCTCTTGCCCGTGTGCCTGGGTAGGTCCATGTGATGCACACAGGC	A	348	PASS	FBXW8	CCDS9182.1	r.?	-	-	Del	intronic	D	117384543	117384599	55	45	648.27	-	-	1	1	1	FBXW8|CCDS9182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW8|CCDS9182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	8	4	1	0	34	27	41	31	8	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727480975	12	125968586	AGT	A	269	PASS	TMEM132B	CCDS41859.1	r.?	-	-	Del	intronic	D	125968586	125968591	2	12	265.898	-	-	2	1	1	TMEM132B|CCDS41859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132B|CCDS41859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	2	3	4	4	28	31	28	31	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727481183	12	126725228	CAAGCTAA	C	435	PASS	-	-	-	-	-	Del	-	D	126725228	126725238	7	70	805.521	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	9	6	11	6	36	30	36	30	11	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727481191	12	126759060	CT	C	900	PASS	-	-	-	-	-	Del	-	D	126759060	126759065	1	72	809.735	-	-	4	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	8	7	9	8	40	58	40	58	9	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727481267	12	126986918	TCTTC	T	418	PASS	-	-	-	-	-	Del	-	D	126986918	126986926	4	24	432.18	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	3	5	4	7	30	42	30	42	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727481638	12	127791181	GATATGTCTACTGTA	G	377	PASS	-	-	-	-	-	Del	-	D	127791181	127791200	14	56	701.088	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	6	7	8	8	33	30	33	30	8	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727482735	12	130460560	GATGAGTATTCAAAGGCATACAAATTGATATGATGGACTTTGGAGACTCAGAAGGTGGGGAGAGTGAGATTGGAGTATGGGATTAAAAAATTACATATTGGGTACAGCAAACACTACGCGGGTGACAGGCGCACAGAATTTGCTACT	G	261	PASS	-	-	-	-	-	Del	-	D	130460560	130460710	146	30	484.998	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	5	0	0	36	27	40	32	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727484340	13	19566362	AG	A	480	PASS	-	-	-	-	-	Del	-	D	19566362	19566364	1	25	433.352	-	-	1	1	-	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	4	5	6	30	35	30	35	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727485155	13	20864915	CCAAGTTCAACTAAATGCATAACAAAAACTAGTGGAGACATGGAAGATGCAGAGATGAAATTGTACTTGCAGACTTCAATGTTATACTATCAGGTTTCAGGGGCTTTTGAAGACCCACTGAGCA	C	290	PASS	-	-	-	-	-	Del	-	D	20864915	20865041	123	27	539.281	-	-	1	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	2	8	0	0	17	25	19	33	2	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727485262	13	21108405	GCCTGTTAGTCTGGCTAAGGGTCCAGGCCACTCACAGACA	G	338	PASS	-	-	-	-	-	Del	-	D	21108405	21108447	39	54	701.788	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	5	8	3	3	24	27	26	32	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727485527	13	21655494	AGACTGG	A	261	PASS	-	-	-	-	-	Del	-	D	21655494	21655503	6	24	487.521	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	2	7	2	6	12	33	13	34	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727486133	13	23274117	GTTTAATAAATAGTA	G	348	PASS	ENSG00000223616	ENST00000419468	r.?	-	-	Del	intronic	D	23274117	23274138	14	49	650.027	-	-	1	1	1	ENSG00000223616|ENST00000419468|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000223616|ENST00000419468|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	6	6	6	7	35	35	35	35	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727486258	13	23555170	TC	T	420	PASS	-	-	-	-	-	Del	-	D	23555170	23555173	1	18	377.376	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	5	3	5	27	26	27	26	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727486740	13	24692445	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	24692445	24692448	1	12	267.834	-	-	2	1	1	-	-	./.	0	0	0	0	9	24	9	24	0	0	./.	2	3	3	3	29	46	30	46	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727489108	13	30711551	CCGG	CT	629	PASS	-	-	-	-	-	Complex	-	DI	30711552	30711554	3	42	0	-	-	0	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	5	6	0	0	23	29	23	29	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727491964	13	40041217	GATTCCA	G	290	PASS	LHFP	CCDS9369.1	r.?	-	-	Del	intronic	D	40041217	40041228	6	35	540.485	-	-	1	1	1	LHFP|CCDS9369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFP|CCDS9369.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	6	4	8	6	25	22	25	22	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727494148	13	47415405	ACT	A	300	PASS	HTR2A	CCDS9405.1	r.?	-	-	Del	intronic	D	47415405	47415421	2	6	262.416	-	-	7	1	1	HTR2A|CCDS9405.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTR2A|CCDS9405.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	0	5	4	6	22	26	22	26	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727494560	13	48734079	GA	G	660	PASS	-	-	-	-	-	Del	-	D	48734079	48734085	1	40	590.44	-	-	5	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	7	4	10	6	29	21	29	21	10	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727496070	13	54573455	TA	T	420	PASS	-	-	-	-	-	Del	-	D	54573455	54573460	1	14	379.183	-	-	4	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	1	6	2	7	30	40	30	40	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727499721	13	65242420	GCAGAAAGC	G	290	PASS	-	-	-	-	-	Del	-	D	65242420	65242433	8	35	539.281	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	4	6	4	8	37	28	37	28	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727501885	13	72218028	C	CA	480	PASS	DACH1	ENST00000305425	r.?	-	-	Ins	intronic	I	72218028	72218034	1	24	420.106	-	-	5	1	1	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	5	3	7	6	39	29	39	29	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727501903	13	72299800	TATCTA	TAA	358	PASS	DACH1	ENST00000305425	r.?	-	-	Complex	intronic	DI	72299801	72299805	5	20	0	-	-	0	1	1	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	4	3	0	0	24	28	24	28	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727502082	13	72892881	GGTCCTGTCTTTAAGCTACAAATTAAGATATCAATTCCTGCCAGGACTCGGGTCACAGAGAGAAAAACTATCTAGACTGACTAATGAGCCTCAATTTACCTTTCTGTTGACTCTTTATTTTGGCAATTGTCTCCACTTTGAATTTCACAAGATTGTTCTTTACTTCATCGA	G	261	PASS	-	-	-	-	-	Del	-	D	72892881	72893055	170	28	485.112	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	6	0	0	28	26	31	32	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727504150	13	79034922	AG	A	300	PASS	-	-	-	-	-	Del	-	D	79034922	79034924	1	12	270.845	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	5	3	39	29	39	29	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727504177	13	79189381	AACAATGTATATCCAACCGAGAT	A	290	PASS	RNF219	CCDS31997.1	r.2552_2573del22	c.?	p.?	Del	3'UTR variant	D	79189381	79189407	22	35	541.689	-	-	1	1	1	RNF219|CCDS31997.1|r.2552_2573del22|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RNF219|CCDS31997.1|r.2552_2573del22|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	16	10	16	10	0	0	./.	6	4	6	4	35	30	35	30	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727506760	13	87786231	AG	A	1140	PASS	-	-	-	-	-	Del	-	D	87786231	87786233	1	98	1028.61	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	13	6	15	8	38	34	38	34	15	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727507013	13	88640414	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	88640414	88640422	1	10	266.63	-	-	7	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	1	4	0	1	29	36	29	37	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727507177	13	89076780	TC	T	840	PASS	-	-	-	-	-	Del	-	D	89076780	89076782	1	60	758.365	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	9	5	13	5	45	26	45	26	13	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727508352	13	92405885	AATAAAACAGAAACGTCTTATGAT	AATAAGACTGATG	551	PASS	GPC5	CCDS9468.1	r.?	-	-	Complex	intronic	DI	92405886	92405908	23	108	0	-	-	0	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	8	11	0	0	44	44	45	45	8	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727508526	13	92931866	TA	T	600	PASS	GPC5	CCDS9468.1	r.?	-	-	Del	intronic	D	92931866	92931868	1	35	541.087	-	-	1	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	4	6	6	8	24	35	24	35	6	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727509333	13	95173222	TAA	T	540	PASS	-	-	-	-	-	Del	-	D	95173222	95173226	2	30	487.521	-	-	3	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	5	4	8	5	43	25	43	25	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727509393	13	95332955	AGTTG	A	1527	PASS	-	-	-	-	-	Del	-	D	95332955	95332962	4	198	1457.74	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	17	10	19	12	63	41	63	41	19	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727510143	13	97097487	TGAA	T	1049	PASS	HS6ST3	CCDS9481.1	r.?	-	-	Del	intronic	D	97097487	97097497	3	96	973.837	-	-	3	1	1	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST3|CCDS9481.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	7	11	11	15	37	45	37	45	11	15	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727510630	13	98790800	GTTGACACGACT	G	377	PASS	FARP1	CCDS9487.1	r.?	-	-	Del	upstream	D	98790800	98790816	11	44	702.992	-	-	1	1	1	FARP1|CCDS9487.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FARP1|CCDS9487.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	14	8	14	0	0	./.	3	10	3	11	32	49	32	50	3	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727510948	13	99582606	AG	A	637	PASS	DOCK9	CCDS45062.1	r.?	-	-	Del	intronic	D	99582606	99582608	1	30	588.032	-	-	1	1	1	DOCK9|CCDS45062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK9|CCDS45062.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	9	3	11	20	33	20	33	3	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727512312	13	103132434	GT	G	420	PASS	-	-	-	-	-	Del	-	D	103132434	103132440	1	18	379.183	-	-	5	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	5	2	10	3	45	20	45	20	10	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727512332	13	103195616	TA	T	300	PASS	-	-	-	-	-	Del	-	D	103195616	103195621	1	12	270.845	-	-	4	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	2	3	4	4	24	33	24	33	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727512876	13	104864508	CTGTAGAAAAGGAAGATTAGAAAGACTCAGTGATGCTTGGGGTTGGGACTGAGGACAGGTGGGAGGGAAGGAAGATTTGGGATGAGTTGCATTGGGAACAGAGACTAGGGAGGGACCGATGTGTAAAAGAATGCCTGGACATCAAGCACCTCAGACGGTTTGCCCATTTTACGACAAGAATTATTTAGATCTTGTAGGATGGAAAAATCAAAAGTGCTGTTTTCTGGCTATTTGGAACCACTGTTGAGTTTGTATTGGGGTCAAGCGGCATTGTAGAAGAAAATAAGGAGTTTAGGTTTTAGGTCAGGTGTGAGTTGAAGAGGTTTTATGTTCTTGAGAGCACAGGCTAAGGGAGAAGGAGGAATGGGGGGTGGAAGGTTGCCCATAGTGAAGGAGGCAAGTTTAAAGAGAAGGGTAGAGACACGGAGGGAGGGGGTTTGGGGGTTCTTACCCTCCAGAAAATCGGGAAAGGGGTCAGGGCGTGGAAATAAGGGGTTGGGGCACAGAGATAAGAGGTCGGGGCATGGAAATAAGGGATTGGAGTGCAGAGATAAGAGGTTGGGGTGTGGAAATAAGGGATCGGGGTGCAGAGATAAGAGGTTGGGGCACAGAAATAAGGGATCAGGGTGCAGAGATAAGAGGTCGAGGCACAGAAATAAGGGATTGGGGGATTCTTGACAACTAGAAAAGCAGTACTTGCTGCTAAGGGTGAAGGAGAAGGGTTGGGGGGGTCTTGCCCCCCAGAAAAGCAGAGAAGGGGTAGAGACACAGAAGGAGTTGGGGGGTTCTTGCCCCCCAGAAAACCAGTACTTGCTGCTAAGGGTGAATGACCAAGGCAGGTGTCCCCACGTGGTGAGATACCTCTGAAACGTGGGTGAATGATCAGAAAGGCATCCCTGCAATGATTAAATGCCAAGGGAAGGCTGCCTTCCTGAGTCCATGACCAGCGCCGGAGTTTTGGGCCCACGGATGAAACGTGTCTCCTTCGTCTCTATGAGAAAATGAATTGAAATTAAAAGAAGGGAGATATTGAAGGGTGGCACCAAGATTGAAAGGAGAAAGTGGATGAGGGATAGTGAGAGAGGTTGGAGAAGAGAGTAAGAAGAGGCTGCTTACCCGATGTAAAATTGGTGAGATGTTCCTTGGGCTGGTGGGTCTGAGGACCTGAGGTGGTAGGTGGATCTTTTTCATGGAGCAAAGAGCAGGAGGACAGGGGATTGATCTCCCAAGGGAGGTCCCCTGATCTGAGTCACAGCACCAAATTTCACTCGCGTCCCTGTGAAGAGACCACCAAACAGGCTTTGTGTGAGCAATAAAGCTTTTAATCACCTGGGTGCAGGTAGGCCGAGTCCGAAAAGAGAGTGAAGGGAGATATGGGTGGGGCCATTTTATAGGATTTGGGTAGGTAAAGGAAAATTACAGTCAAAGGGGTGTTGTTCTCTGGCGGGAA	CTCTGATCT	255	PASS	-	-	-	-	-	Complex	-	DI	104864509	104865957	1449	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	7	2	0	0	15	13	22	15	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727513607	13	107019963	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	107019963	107019971	1	20	374.366	-	-	7	1	1	-	-	./.	0	0	0	0	20	12	20	12	0	0	./.	3	4	4	4	35	46	35	47	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727513917	13	107882416	TG	T	600	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	intronic	D	107882416	107882420	1	32	541.689	-	-	3	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	7	3	9	4	35	35	35	35	9	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727515551	13	112860242	CA	C	600	PASS	AL162499.2	ENST00000507553	r.?	-	-	Del	downstream	D	112860242	112860247	1	35	540.485	-	-	4	1	1	AL162499.2|ENST00000507553|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AL162499.2|ENST00000507553|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	16	18	16	18	0	0	./.	4	6	6	7	38	46	38	46	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727518794	14	26128744	TGTAAAAACCA	T	464	PASS	-	-	-	-	-	Del	-	D	26128744	26128756	10	80	866.761	-	-	1	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	7	9	7	9	32	42	32	42	7	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727518883	14	26471979	G	GGA	538	PASS	-	-	-	-	-	Ins	-	I	26471979	26471993	2	35	517.417	-	-	6	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	6	4	7	5	46	27	46	27	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727518981	14	26801926	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	26801926	26801936	1	10	265.03	-	-	9	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	1	4	1	5	22	34	22	34	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727523605	14	39759228	C	CT	540	PASS	CTAGE5	CCDS9674.1	r.?	-	-	Ins	intronic	I	39759228	39759234	1	30	481.871	-	-	5	1	1	CTAGE5|CCDS9674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTAGE5|CCDS9674.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	4	7	5	39	45	39	45	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727523616	14	39770635	ATAACAAGAATGAGATGCTAACCTCAAGCTCTGCT	AATCC	406	PASS	CTAGE5	CCDS9674.1	r.?	-	-	Complex	intronic	DI	39770636	39770669	34	39	0	-	-	0	1	1	CTAGE5|CCDS9674.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CTAGE5|CCDS9674.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	12	2	0	0	37	19	38	21	12	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727524071	14	41177688	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	41177688	41177696	1	20	375.257	-	-	7	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	4	3	6	6	34	45	34	45	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727524403	14	41835611	AT	A	360	PASS	-	-	-	-	-	Del	-	D	41835611	41835617	1	12	325.261	-	-	5	1	1	-	-	./.	0	0	0	0	20	5	20	5	0	0	./.	5	1	6	1	42	20	42	20	6	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727525554	14	45129211	CAATGAATATGGTTACCCA	C	290	PASS	-	-	-	-	-	Del	-	D	45129211	45129234	18	36	542.102	-	-	1	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	5	5	5	35	36	35	36	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727525622	14	45332504	ATTGCAAATTGT	A	551	PASS	-	-	-	-	-	Del	-	D	45332504	45332521	11	104	1028.79	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	7	12	9	12	40	41	40	41	9	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727529727	14	56254684	GTTAATTAATTTTTTT	G	290	PASS	-	-	-	-	-	Del	-	D	56254684	56254702	15	32	538.49	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	7	3	7	5	24	33	25	33	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727530511	14	58295113	AAATAATAAT	A	348	PASS	-	-	-	-	-	Del	-	D	58295113	58295126	9	40	648.114	-	-	4	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	9	3	12	5	35	30	35	30	12	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727530535	14	58348868	GCTCCGAT	G	435	PASS	-	-	-	-	-	Del	-	D	58348868	58348879	7	72	810.745	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	8	7	10	8	29	39	30	39	11	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727530963	14	59341697	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	59341697	59341706	1	10	266.837	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	1	6	5	52	60	53	61	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727531315	14	60390449	GAGATCA	G	388	PASS	-	-	-	-	-	Del	-	D	60390449	60390459	6	60	758.943	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	9	5	10	5	31	51	32	51	11	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727531906	14	62049523	AC	A	600	PASS	-	-	-	-	-	Del	-	D	62049523	62049525	1	35	534.877	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	6	9	10	51	51	51	51	9	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727532271	14	62970701	AT	A	360	PASS	-	-	-	-	-	Del	-	D	62970701	62970707	1	12	325.261	-	-	5	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	1	7	2	35	32	35	32	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727537262	14	79535581	ATTGGCTTCCTATCTCCTATTCT	A	261	PASS	NRXN3	CCDS9870.1	r.?	-	-	Del	intronic	D	79535581	79535605	22	28	486.086	-	-	1	1	1	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	6	3	5	3	29	27	30	27	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727537309	14	79697489	ATGCCATCGGGCTGTCT	A	348	PASS	NRXN3	CCDS9870.1	r.?	-	-	Del	intronic	D	79697489	79697508	16	48	650.522	-	-	1	1	1	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	7	5	6	29	30	29	31	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727537861	14	81937496	C	CA	300	PASS	SEL1L	CCDS9876.1	r.?	-	-	Ins	downstream	I	81937496	81937498	1	12	265.632	-	-	1	1	1	SEL1L|CCDS9876.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	SEL1L|CCDS9876.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	12	19	12	19	0	0	./.	2	3	2	3	23	29	23	30	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727537962	14	82297861	GTT	G	540	PASS	-	-	-	-	-	Del	-	D	82297861	82297871	2	30	485.484	-	-	9	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	6	5	41	27	41	27	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727538277	14	83484930	AT	A	420	PASS	-	-	-	-	-	Del	-	D	83484930	83484935	1	20	379.471	-	-	4	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	4	4	4	30	34	30	34	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727538310	14	83579110	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	83579110	83579118	1	14	374.655	-	-	7	1	1	-	-	./.	0	0	0	0	10	21	10	23	0	0	./.	6	1	7	4	30	31	30	31	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727538444	14	84118299	TG	T	300	PASS	-	-	-	-	-	Del	-	D	84118299	84118304	1	6	268.643	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	0	7	9	32	24	32	24	7	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727539404	14	87004407	AG	A	420	PASS	-	-	-	-	-	Del	-	D	87004407	87004409	1	20	377.063	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	3	4	5	6	27	21	27	21	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727539479	14	87288436	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	87288436	87288444	1	20	375.257	-	-	7	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	3	4	3	7	17	31	17	31	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727539704	14	88314352	GA	G	360	PASS	-	-	-	-	-	Del	-	D	88314352	88314361	1	16	325.261	-	-	8	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	3	5	5	29	20	29	20	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727542678	14	98202872	TC	T	780	PASS	-	-	-	-	-	Del	-	D	98202872	98202875	1	56	704.733	-	-	2	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	6	7	6	11	21	31	21	31	6	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727548021	15	25528087	C	CT	900	PASS	SNORD109A	ENST00000458961	r.?	-	-	Ins	downstream	I	25528087	25528088	1	72	804.484	-	-	0	1	1	SNORD109A|ENST00000458961|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	SNORD109A|ENST00000458961|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	13	26	14	26	0	0	./.	8	7	9	7	27	26	27	27	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727550831	15	35150905	C	CTA	592	PASS	AQR	CCDS42013.1	r.?	-	-	Ins	intronic	I	35150905	35150910	2	39	741.821	-	-	2	1	1	AQR|CCDS42013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AQR|CCDS42013.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	12	2	13	20	39	20	41	2	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727551178	15	36316113	TC	T	420	PASS	-	-	-	-	-	Del	-	D	36316113	36316115	1	14	379.64	-	-	1	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	1	6	5	6	23	23	23	23	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727551888	15	38682599	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	38682599	38682615	2	12	269.967	-	-	7	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	2	3	1	3	22	21	22	21	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727552624	15	40947067	TAAAAAAATTTTTAAA	T	290	PASS	CASC5	CCDS42023.1	r.?	-	-	Del	intronic	D	40947067	40947085	15	36	538.731	-	-	1	1	1	CASC5|CCDS42023.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASC5|CCDS42023.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	19	7	19	0	0	./.	5	5	5	5	25	28	25	28	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727554424	15	47320269	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	47320269	47320271	1	24	429.058	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	5	9	7	33	24	34	24	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727554838	15	48842673	CT	C	269	PASS	FBN1	CCDS32232.1	r.?	-	-	Del	intronic	D	48842673	48842677	1	12	269.967	-	-	3	1	1	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBN1|CCDS32232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	23	13	23	0	0	./.	2	3	3	3	23	20	23	20	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727556104	15	53269500	C	CT	509	PASS	-	-	-	-	-	Ins	-	I	53269500	53269507	1	24	479.68	-	-	6	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	7	2	8	2	42	31	43	31	8	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727557931	15	58412838	CT	C	380	PASS	-	-	-	-	-	Del	-	D	58412838	58412842	1	30	488.109	-	-	3	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	4	5	7	7	26	31	26	31	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727559402	15	62771684	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	62771684	62771694	1	15	316.375	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	4	2	7	6	34	44	34	44	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727560190	15	64914590	AGATTGGTAG	A	290	PASS	ZNF609	CCDS32270.1	r.?	-	-	Del	intronic	D	64914590	64914602	9	35	542.343	-	-	1	1	1	ZNF609|CCDS32270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF609|CCDS32270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	4	7	5	27	23	27	23	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727562438	15	71407131	CAAG	C	300	PASS	THSD4	CCDS10238.2	r.?	-	-	Del	intronic	D	71407131	71407137	3	12	271.172	-	-	1	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	3	31	16	31	16	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727562473	15	71531158	ATTGCTAGGTCTTGTGGTAACACT	AAAG	348	PASS	THSD4	CCDS10238.2	r.?	-	-	Complex	intronic	DI	71531159	71531181	23	48	0	-	-	0	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	5	7	0	0	33	28	35	31	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727564160	15	76986140	A	AT	480	PASS	SCAPER	ENST00000303521	r.?	-	-	Ins	intronic	I	76986140	76986143	1	21	429.058	-	-	2	1	1	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	6	3	6	34	26	35	26	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727565433	15	80645183	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	80645183	80645184	1	12	319.385	-	-	0	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	1	5	2	5	34	29	34	30	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727568980	15	91673734	TGA	T	300	PASS	SV2B	CCDS10370.1	r.?	-	-	Del	intronic	D	91673734	91673751	2	12	269.967	-	-	8	1	1	SV2B|CCDS10370.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SV2B|CCDS10370.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	3	2	4	2	37	49	37	49	4	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727569331	15	92821677	AGGCG	A	461	PASS	AC116903.2	ENST00000502597	r.?	-	-	Del	intronic	D	92821677	92821687	4	35	539.333	-	-	2	1	1	AC116903.2|ENST00000502597|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC116903.2|ENST00000502597|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	4	6	4	6	29	42	29	42	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727569372	15	92979452	TATTTTAGAGGGGGTCACC	T	290	PASS	ST8SIA2	CCDS10372.1	r.?	-	-	Del	intronic	D	92979452	92979474	18	35	535.721	-	-	1	1	1	ST8SIA2|CCDS10372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST8SIA2|CCDS10372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	6	2	5	38	29	40	29	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727569399	15	93097266	C	CAAT	600	PASS	-	-	-	-	-	Ins	-	I	93097266	93097274	3	32	523.077	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	7	3	9	4	54	48	55	48	9	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727569743	15	93723302	TGCCGAGAGCTGGGGCTGCTGCTTCTGAGCTGAAAGGGAAAGAAGGGTACATCTTTCAGAGCCACTCAGTCCCCCAATCATAGTGCCTGGCTGCGACCTCCCACTGGGCCCATCACAAGTCCTCATGGTTGGGGACGTCAGTGACCTGCAACAGGGTCAGGGAAGAACATCCTGGCCAGGAGTGAGCTAAGGAAGAGATGCACCACAGA	T	261	PASS	-	-	-	-	-	Del	-	D	93723302	93723514	208	24	488.109	-	-	1	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	2	7	0	0	32	27	34	38	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727570033	15	94290964	GA	G	1200	PASS	-	-	-	-	-	Del	-	D	94290964	94290972	1	117	1082.88	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	12	8	17	11	62	39	62	39	17	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727570089	15	94408456	AT	A	1020	PASS	-	-	-	-	-	Del	-	D	94408456	94408462	1	84	921.983	-	-	5	1	1	-	-	./.	0	0	0	0	9	22	9	22	0	0	./.	6	11	8	14	41	64	41	64	8	14	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727570278	15	94876104	T	TTA	300	PASS	MCTP2	CCDS32338.1	r.?	-	-	Ins	intronic	I	94876104	94876118	2	12	265.151	-	-	6	1	1	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	5	2	52	61	52	61	5	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571099	15	96981693	GC	G	300	PASS	-	-	-	-	-	Del	-	D	96981693	96981695	1	10	271.172	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	1	4	1	4	38	48	38	48	1	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571179	15	97237540	GT	G	360	PASS	-	-	-	-	-	Del	-	D	97237540	97237543	1	15	324.804	-	-	2	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	2	4	3	5	42	54	42	54	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571269	15	97472358	TA	T	300	PASS	-	-	-	-	-	Del	-	D	97472358	97472363	1	12	271.172	-	-	4	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	3	2	4	3	34	35	34	35	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571359	15	97712530	CAGGCAGGCTCTGATAAACTTGTGACTCAA	C	290	PASS	-	-	-	-	-	Del	-	D	97712530	97712565	29	35	541.139	-	-	1	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	4	6	4	5	33	31	33	32	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571360	15	97712845	CATT	C	656	PASS	-	-	-	-	-	Del	-	D	97712845	97712849	3	56	702.036	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	7	6	9	6	51	35	51	35	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571464	15	98001791	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	98001791	98001800	1	30	482.69	-	-	8	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	4	5	6	9	41	43	41	43	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727571578	15	98390159	G	GA	480	PASS	AC027708.1	ENST00000503768	r.?	-	-	Ins	intronic	I	98390159	98390163	1	9	426.65	-	-	3	1	1	AC027708.1|ENST00000503768|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC027708.1|ENST00000503768|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	8	0	9	6	50	47	51	47	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727572741	15	101289153	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	101289153	101289161	1	12	319.385	-	-	7	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	1	5	2	11	40	46	41	47	2	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727573137	15	102326299	CT	C	456	PASS	-	-	-	-	-	Del	-	D	102326299	102326306	1	25	432.67	-	-	6	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	4	4	7	6	46	49	46	49	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727573322	16	325567	AT	A	900	PASS	RGS11	CCDS42088.1	r.?	-	-	Del	intronic	D	325567	325569	1	72	809.896	-	-	1	1	1	RGS11|CCDS42088.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS11|CCDS42088.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	8	7	11	11	37	35	37	35	11	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727574737	16	4536232	CAGAAACCC	CATTA	317	PASS	HMOX2	CCDS10517.1	r.?	-	-	Complex	intronic	DI	4536233	4536240	8	49	0	-	-	0	1	1	HMOX2|CCDS10517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	HMOX2|CCDS10517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	6	6	0	0	45	47	45	47	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727577571	16	11109465	AAAATTGTCCTGC	A	290	PASS	CLEC16A	CCDS45409.1	r.?	-	-	Del	intronic	D	11109465	11109483	12	35	533.509	-	-	1	1	1	CLEC16A|CCDS45409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLEC16A|CCDS45409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	4	6	4	7	31	34	31	35	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727578659	16	13409156	TAGAGTAATTGTG	T	319	PASS	-	-	-	-	-	Del	-	D	13409156	13409172	12	42	596.131	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	5	6	5	55	33	55	33	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727579427	16	15646874	A	AT	360	PASS	C16orf45	CCDS10561.1	r.?	-	-	Ins	intronic	I	15646874	15646883	1	15	316.734	-	-	8	1	1	C16orf45|CCDS10561.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C16orf45|CCDS10561.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	6	3	42	31	43	31	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727580152	16	17683550	AG	A	329	PASS	-	-	-	-	-	Del	-	D	17683550	17683559	1	15	325.163	-	-	8	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	4	2	7	2	26	18	26	18	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727580667	16	19188596	GGCCATTATGAATGGCACCACCTAGGGTTGTGCAGTCTACAGACTGAACA	G	522	PASS	SYT17	CCDS10575.1	r.?	-	-	Del	intronic	D	19188596	19188648	49	99	965.253	-	-	1	1	1	SYT17|CCDS10575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT17|CCDS10575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	8	10	4	3	28	16	32	23	8	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727582216	16	23563303	GCATTTTTTCAGGTGTCATCTGCCACCCCGGGCAGGGCAGTACAAATGTAGCCACTTCTCCAGGAACTCCCCATTTTCCACTCAGAACTCCATGAGAAGACCCACAGGCTCCTTTTCCTGCTTCCTGTTCCTTCCCTGCAGAAAGATCCTTTCTCTGCCAGGCTTACCTGCCCACTCCAGCATGTCCT	G	435	PASS	EARS2	CCDS42132.1	r.307_327+166del187	c.275_295+166del187	p.?	Del	ess splice	D	23563303	23563493	187	70	809.896	-	-	1	1	1	EARS2|CCDS42132.1|r.307_327+166del187|c.275_295+166del187|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	EARS2|CCDS42132.1|r.307_327+166del187|c.275_295+166del187|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	11	11	11	11	0	0	./.	9	6	0	0	20	15	29	21	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727582217	16	23565911	GGCCGACCCT	G	261	PASS	UBFD1	CCDS10613.2	r.?	-	-	Del	upstream	D	23565911	23565923	9	24	487.744	-	-	1	1	1	UBFD1|CCDS10613.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EARS2|CCDS42132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	7	2	7	2	36	24	36	24	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727582322	16	23868315	CT	C	420	PASS	PRKCB	CCDS10619.1	r.?	-	-	Del	intronic	D	23868315	23868325	1	20	379.356	-	-	9	1	1	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCB|CCDS10619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	4	4	5	24	23	24	23	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727583728	16	27821797	T	TA	300	PASS	GSG1L	CCDS45450.1	r.?	-	-	Ins	intronic	I	27821797	27821804	1	12	267.958	-	-	6	1	1	GSG1L|CCDS45450.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GSG1L|CCDS45450.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	3	2	7	3	31	32	31	32	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727586992	16	34658427	TCTATAAAAGTTGATCTCACAGAAGTAG	T	261	PASS	-	-	-	-	-	Del	-	D	34658427	34658455	27	30	485.336	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	3	4	27	27	29	27	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727589588	16	53627438	CGTTTT	C	298	PASS	-	-	-	-	-	Del	-	D	53627438	53627449	5	16	325.163	-	-	2	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	3	3	4	3	22	38	22	38	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727591561	16	59532098	GCAG	GC	747	PASS	-	-	-	-	-	Complex	-	DI	59532099	59532101	3	63	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	8	0	0	35	29	35	29	6	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727591826	16	60275680	AG	A	360	PASS	-	-	-	-	-	Del	-	D	60275680	60275682	1	12	325.163	-	-	1	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	1	5	1	6	5	34	5	34	1	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727592099	16	61101020	ATCTC	A	329	PASS	-	-	-	-	-	Del	-	D	61101020	61101028	4	15	325.163	-	-	3	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	2	5	5	35	28	35	28	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727592901	16	63656720	TC	T	569	PASS	-	-	-	-	-	Del	-	D	63656720	63656722	1	35	541.336	-	-	1	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	4	6	4	8	19	36	19	36	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727593519	16	65891131	ATT	A	360	PASS	-	-	-	-	-	Del	-	D	65891131	65891135	2	12	325.163	-	-	3	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	1	5	1	6	25	35	25	35	1	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727596163	16	73838253	ACCAATAAGATCCCTACAGATGGCAAG	A	348	PASS	-	-	-	-	-	Del	-	D	73838253	73838283	26	48	650.325	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	7	4	6	41	27	42	28	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727598164	16	78959159	TCATTGCTGCCACTGGGTGG	T	319	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78959159	78959181	19	40	593.723	-	-	1	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	14	22	14	0	0	./.	7	4	6	3	35	26	36	27	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727598346	16	79494287	CT	C	360	PASS	-	-	-	-	-	Del	-	D	79494287	79494292	1	12	325.163	-	-	4	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	5	1	6	5	26	35	26	35	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727599144	16	82040398	C	CA	300	PASS	SDR42E1	CCDS42205.1	r.?	-	-	Ins	intronic	I	82040398	82040407	1	10	267.958	-	-	8	1	1	SDR42E1|CCDS42205.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SDR42E1|CCDS42205.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	4	1	6	2	33	29	33	31	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727601764	17	675567	T	TA	540	PASS	GLOD4	CCDS32520.1	r.?	-	-	Ins	intronic	I	675567	675575	1	30	482.01	-	-	7	1	1	GLOD4|CCDS32520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GLOD4|CCDS32520.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	4	5	4	8	29	22	29	22	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727603997	17	6172715	TA	T	689	PASS	-	-	-	-	-	Del	-	D	6172715	6172717	1	48	649.905	-	-	1	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	7	5	7	5	28	31	28	31	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727604615	17	7861430	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	7861430	7861439	1	36	589.124	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	8	3	11	4	35	15	35	16	11	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727605745	17	10980427	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	10980427	10980436	1	56	696.237	-	-	8	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	7	6	9	6	42	27	42	28	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727610371	17	25770974	GT	G	540	PASS	-	-	-	-	-	Del	-	D	25770974	25770978	1	18	482.612	-	-	3	1	-	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	1	8	3	10	34	47	34	47	3	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727610819	17	27418294	GC	G	480	PASS	MYO18A	CCDS45642.1	r.?	-	-	Del	intronic	D	27418294	27418300	1	24	431.464	-	-	5	1	1	MYO18A|CCDS45642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO18A|CCDS45642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	3	5	6	7	34	27	34	27	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727612370	17	31518373	ATGGGGAACCT	A	261	PASS	ACCN1	CCDS11276.1	r.?	-	-	Del	intronic	D	31518373	31518385	10	28	487.429	-	-	1	1	1	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	6	3	6	3	30	36	30	36	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727612579	17	32282653	CTTCTTCTCAGTGGTCTGAAGCCAGCCCCACGGGACCCCTCCTATGTTGAGCTCAGAGACACCAGCACTAGCCAATCAGCATCTCCCTCTCAGAGGTCTGAGCTCCAGCCCAACAGGGCCCCTCCTCCAACGTCCTGCATTTTAATAATCCCAACTGCTTATGTTTTTTCCTCCAGCCCAAGGGACAGTGGATGCTTTCTGTAGTAGCTACTACTTCTGTAAAACCTTAGTGTCCTCTTTTACTTTTTCAGATACCTGGTTAATGAATTTACACCTAGTTAAAATTTTTGTATTATGTTCTCTCCATTCAAATGCCTGGGATAGTTCCTATCTCTTGAGTGGCCATTGACTGATAGACAAGCTGAGGGCCCATCATTAGACTATTATAATTAATATAATATAATGAGTGATGGACTCATGAAACAAGGTAGAGACAAGTCAGAGGTAGAGTGCCTGACACATAGTAGGGCTCAAGAAATAGCTAATGAATTGAAAAAAATGAATCACTGAATAAAGGAAAGTCTTAGTGTTGAAGGAATGCTTGGGCAGTGATCCAAGCAGGAGAGTCAATAGGAGCGGGAGCGCTGGGAAAGCGCTCTTGAAGAAGAGTTTCCACCATTCAGAGAATGAGGGTTCAAAGTCTGAAGTGGGTTGTATCTCAAGAATTGACCTGA	C	319	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	32282653	32283327	673	42	593.94	-	-	1	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	6	5	0	0	31	12	37	17	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727613271	17	34441688	CGA	C	745	PASS	-	-	-	-	-	Del	-	D	34441688	34441691	2	70	787.095	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	9	6	9	7	28	24	28	24	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727615287	17	39641454	CAG	C	269	PASS	KRT35	CCDS11394.2	r.?	-	-	Del	upstream	D	39641454	39641474	2	12	267.784	-	-	9	1	-	KRT35|CCDS11394.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KRT35|CCDS11394.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	19	13	19	13	0	0	./.	3	2	4	4	23	34	23	34	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727618124	17	46497722	AGAACTGTCA	AATAAC	377	PASS	SKAP1	CCDS32674.1	r.?	-	-	Complex	intronic	DI	46497723	46497731	9	44	0	-	-	0	1	1	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	10	3	0	0	53	31	53	31	10	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727619184	17	48837704	A	AG	600	PASS	LUC7L3	CCDS2573.1	r.?	-	-	Ins	downstream	I	48837704	48837708	1	11	530.751	-	-	3	1	1	LUC7L3|CCDS2573.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	LUC7L3|CCDS2573.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	7	12	8	0	0	./.	0	10	1	2	38	40	38	40	1	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727620217	17	51044242	AT	A	480	PASS	-	-	-	-	-	Del	-	D	51044242	51044250	1	25	433.27	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	4	6	10	37	50	37	50	6	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727620549	17	51989641	CACTGGAACATCCTAGAGAGACAAAGCAGAGTGAGCCAGTGGGTGGAGTGCTGAATAAACAAAAGCTTTAGAGGTAATGCTGAAGCAAGGTCATGCAGGTTTAGTAGATCATGCCAAGGTTTGGTATCATATCCTAAGTGAAATGTGGGGGATTGCAAGCTGAACTATAGAATCAGGCTTGCATTTTAAAGATTGATCTGGATACTAATTAAAGGATAGAGAGTAGGAGGCAAGAATGGA	CAAGAATGGAG	261	PASS	-	-	-	-	-	Complex	-	DI	51989642	51989880	239	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	5	4	0	0	44	32	49	36	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727623483	17	58813186	C	CT	1320	PASS	BCAS3	CCDS45749.1	r.?	-	-	Ins	intronic	I	58813186	58813195	1	144	1177.65	-	-	8	1	1	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BCAS3|CCDS45749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	14	23	14	0	0	./.	11	11	12	14	55	58	57	59	12	14	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727624177	17	60222030	CAG	C	600	PASS	-	-	-	-	-	Del	-	D	60222030	60222033	2	35	539.782	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	6	6	8	41	51	41	51	6	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727625969	17	64135154	ACTCTAACAAC	A	261	PASS	CCDC46	CCDS32710.1	r.?	-	-	Del	intronic	D	64135154	64135167	10	30	487.429	-	-	1	1	1	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	5	8	6	57	37	57	37	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727627821	17	67656979	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	67656979	67656981	1	7	321.34	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	0	6	7	6	51	50	53	51	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727628187	17	68596334	TCTC	T	689	PASS	-	-	-	-	-	Del	-	D	68596334	68596340	3	45	649.905	-	-	1	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	8	4	11	7	49	37	49	37	11	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727628513	17	69374222	TTC	T	329	PASS	-	-	-	-	-	Del	-	D	69374222	69374241	2	15	321.34	-	-	9	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	2	5	3	60	54	60	54	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727628676	17	69921088	CG	C	480	PASS	-	-	-	-	-	Del	-	D	69921088	69921094	1	21	432.668	-	-	5	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	6	2	7	2	40	30	40	30	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727628915	17	70603608	AACAACTCTTTAATT	A	609	PASS	AC006948.1	ENST00000499674	r.?	-	-	Del	intronic	D	70603608	70603625	14	120	1137.33	-	-	1	1	1	AC006948.1|ENST00000499674|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC006948.1|ENST00000499674|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	7	14	11	14	45	61	45	61	11	14	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727632793	17	80254688	TATTCTG	T	319	PASS	AC132872.4	ENST00000499745	r.?	-	-	Del	upstream	D	80254688	80254698	6	40	593.94	-	-	1	1	1	AC132872.4|ENST00000499745|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC132872.4|ENST00000499745|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	10	13	10	13	0	0	./.	7	4	8	5	39	33	39	33	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727634895	18	4070530	G	GGT	329	PASS	-	-	-	-	-	Ins	-	I	4070530	4070531	2	12	318.141	-	-	0	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	1	5	0	0	7	23	7	24	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727636038	18	8017007	TTA	T	480	PASS	PTPRM	CCDS11840.1	r.?	-	-	Del	intronic	D	8017007	8017014	2	25	433.821	-	-	3	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	4	6	6	26	28	26	28	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727636555	18	9598343	GAAACATGAAGA	G	290	PASS	PPP4R1	CCDS42412.1	r.?	-	-	Del	intronic	D	9598343	9598358	11	35	542.276	-	-	1	1	1	PPP4R1|CCDS42412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP4R1|CCDS42412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	4	6	4	8	34	42	34	42	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727636740	18	10156143	ATAGTGTTGGCATC	A	261	PASS	-	-	-	-	-	Del	-	D	10156143	10156158	13	28	488.049	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	6	3	7	36	38	36	38	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727637904	18	13599192	G	GT	300	PASS	C18orf1	CCDS32793.1	r.?	-	-	Ins	intronic	I	13599192	13599200	1	12	267.526	-	-	7	1	1	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C18orf1|CCDS32793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	3	2	8	2	29	18	30	18	8	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727639990	18	21760023	TC	T	540	PASS	OSBPL1A	CCDS11884.1	r.?	-	-	Del	intronic	D	21760023	21760025	1	24	488.049	-	-	1	1	1	OSBPL1A|CCDS11884.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBPL1A|CCDS11884.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	7	2	9	2	33	31	33	31	9	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727640630	18	23950021	GAGAACA	G	261	PASS	TAF4B	CCDS42421.1	r.?	-	-	Del	intronic	D	23950021	23950030	6	30	488.049	-	-	1	1	1	TAF4B|CCDS42421.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAF4B|CCDS42421.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	5	3	5	34	32	35	32	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727640631	18	23950732	A	ATAGAGATAG	319	PASS	TAF4B	CCDS42421.1	r.?	-	-	Ins	intronic	I	23950732	23950741	9	42	533.288	-	-	0	1	1	TAF4B|CCDS42421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TAF4B|CCDS42421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	6	5	5	5	36	25	37	25	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727641441	18	26906154	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	26906154	26906164	1	10	267.526	-	-	9	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	4	1	4	1	35	42	35	42	4	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727643931	18	35771376	GTATA	G	716	PASS	-	-	-	-	-	Del	-	D	35771376	35771383	4	63	757.381	-	-	3	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	8	6	9	6	36	23	36	23	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727644397	18	37348322	G	GA	360	PASS	AC105201.1	ENST00000510201	r.?	-	-	Ins	intronic	I	37348322	37348332	1	15	321.754	-	-	9	1	1	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	2	4	3	5	35	27	35	27	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727645395	18	40458503	C	CA	300	PASS	RIT2	CCDS11921.1	r.?	-	-	Ins	intronic	I	40458503	40458507	1	10	268.128	-	-	3	1	1	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	4	1	5	1	30	13	31	13	5	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727646415	18	44153089	GGAAAT	G	480	PASS	LOXHD1	ENST00000398722	r.?	-	-	Del	intronic	D	44153089	44153097	5	25	433.821	-	-	1	1	1	LOXHD1|ENST00000398722|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LOXHD1|ENST00000398722|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	4	4	4	4	34	21	34	21	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727649326	18	53038148	GT	G	480	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	53038148	53038154	1	24	429.607	-	-	5	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	5	3	6	4	38	57	38	57	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727651253	18	58178124	ATATTGATATCTC	A	319	PASS	-	-	-	-	-	Del	-	D	58178124	58178141	12	42	594.096	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	6	5	6	24	33	24	33	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727651322	18	58342809	CA	C	360	PASS	-	-	-	-	-	Del	-	D	58342809	58342812	1	7	325.366	-	-	2	1	1	-	-	./.	0	0	0	0	3	20	3	20	0	0	./.	0	6	0	6	9	25	9	25	0	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727651670	18	59500437	AAGATAGATTTCTCACAAACCATT	A	348	PASS	RNF152	CCDS11978.1	r.?	-	-	Del	intronic	D	59500437	59500463	23	45	649.528	-	-	1	1	1	RNF152|CCDS11978.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RNF152|CCDS11978.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	16	29	16	0	0	./.	8	4	7	3	38	29	39	30	8	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727651677	18	59512057	TA	T	329	PASS	RNF152	CCDS11978.1	r.?	-	-	Del	intronic	D	59512057	59512062	1	16	322.356	-	-	4	1	1	RNF152|CCDS11978.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RNF152|CCDS11978.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	5	8	26	50	26	50	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727652234	18	61087284	AC	A	360	PASS	VPS4B	CCDS11983.1	r.?	-	-	Del	intronic	D	61087284	61087286	1	15	325.366	-	-	1	1	1	VPS4B|CCDS11983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS4B|CCDS11983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	11	21	11	0	0	./.	2	4	3	5	28	36	28	36	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727652977	18	63151498	GAATGATATACTGGGTAGATTTCAGATACCATTATATTCTTTTGAAGTGTACTGATTTGATTAATTGATTGATTTTTTAAGTTTTAATAGGGAGTCACTTTAGCTGAACTCAAACTTCAGTCTCAGTCTCTTCTGTGGTGGGAAGCAGGTAAAACTTCTGTTTACATATTTTGTTCTTAGTTTGGCTCCTTAGATTCTACTATACACCTGAAT	G	406	PASS	-	-	-	-	-	Del	-	D	63151498	63151715	212	63	759.187	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	8	6	0	0	27	19	35	25	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727654652	18	67369556	GT	G	720	PASS	DOK6	CCDS32841.1	r.?	-	-	Del	intronic	D	67369556	67369562	1	48	650.732	-	-	5	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	6	20	6	0	0	./.	7	5	9	8	24	15	24	15	9	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727654976	18	68228103	T	TA	480	PASS	AC013558.1	ENST00000511515	r.?	-	-	Ins	intronic	I	68228103	68228109	1	24	425.392	-	-	5	1	1	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	21	22	21	0	0	./.	5	3	6	6	34	42	35	42	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727655902	18	70575446	AG	A	480	PASS	-	-	-	-	-	Del	-	D	70575446	70575448	1	9	433.219	-	-	1	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	0	8	1	9	38	39	38	39	1	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727656146	18	71307603	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	71307603	71307610	1	14	371.767	-	-	6	1	1	-	-	./.	0	0	0	0	11	12	12	12	0	0	./.	6	1	7	3	39	23	40	23	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727656754	18	73149167	TA	T	360	PASS	-	-	-	-	-	Del	-	D	73149167	73149177	1	16	325.366	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	3	3	4	36	23	36	23	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727657679	18	75682812	AACA	AAC	1076	PASS	AC134978.1	ENST00000505670	r.?	-	-	Complex	downstream	DI	75682813	75682815	3	117	0	-	-	0	1	1	AC134978.1|ENST00000505670|r.?|-|-|non_protein_coding:indel:500B_downstream_variant|SO:0000011:SO:1000032:SO:0001634	AC134978.1|ENST00000505670|r.?|-|-|non_protein_coding:indel:500B_downstream_variant|SO:0000011:SO:1000032:SO:0001634	./.	0	0	0	0	17	11	17	11	0	0	./.	12	8	0	0	38	30	38	30	12	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727657963	18	76626944	AGCAGGCAGAGAAAGCC	A	320	PASS	-	-	-	-	-	Del	-	D	76626944	76626963	16	49	645.915	-	-	1	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	6	6	5	4	18	32	18	34	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727660047	19	4247047	AGT	A	480	PASS	CCDC94	CCDS12124.1	r.?	-	-	Del	upstream	D	4247047	4247051	2	25	425.725	-	-	1	1	1	CCDC94|CCDS12124.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CCDC94|CCDS12124.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	13	14	13	0	0	./.	4	4	6	4	26	26	26	26	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727663744	19	13261240	CA	C	300	PASS	IER2	CCDS12295.1	r.?	-	-	Del	upstream	D	13261240	13261242	1	12	270.142	-	-	1	1	1	IER2|CCDS12295.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	IER2|CCDS12295.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	13	8	13	0	0	./.	3	2	4	4	27	19	27	19	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727668232	19	23791350	TC	T	660	PASS	-	-	-	-	-	Del	-	D	23791350	23791352	1	36	596.962	-	-	1	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	3	8	4	10	28	42	28	42	4	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727669982	19	31444376	AACTGTAATTAAATGTATATTAGACTTCTG	A	290	PASS	-	-	-	-	-	Del	-	D	31444376	31444412	29	36	542.693	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	5	5	3	2	23	32	24	34	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727670048	19	31747477	ACAGAGTATGTT	A	290	PASS	-	-	-	-	-	Del	-	D	31747477	31747491	11	36	537.876	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	5	6	5	27	45	27	45	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727671201	19	34757275	G	GT	600	PASS	KIAA0355	CCDS12436.1	r.?	-	-	Ins	intronic	I	34757275	34757284	1	36	536.672	-	-	8	1	1	KIAA0355|CCDS12436.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KIAA0355|CCDS12436.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	5	5	6	6	39	38	40	38	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727674193	19	42602728	A	AAAGTC	298	PASS	POU2F2	CCDS33035.1	r.?	-	-	Ins	intronic	I	42602728	42602735	5	15	306.35	-	-	1	1	1	POU2F2|CCDS33035.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POU2F2|CCDS33035.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	4	2	4	2	34	25	34	25	4	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727674194	19	42603169	GA	G	329	PASS	POU2F2	CCDS33035.1	r.?	-	-	Del	intronic	D	42603169	42603173	1	15	325.616	-	-	3	1	1	POU2F2|CCDS33035.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU2F2|CCDS33035.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	4	2	4	31	24	31	24	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727674733	19	44602331	CTCATGTGCATTCATAACTGTATTTGTATTGGTGATGTTAATCTAATTTAAATTG	CTGTGA	348	PASS	ZNF224	CCDS33046.1	r.?	-	-	Complex	intronic	DI	44602332	44602385	54	45	0	-	-	0	1	1	ZNF224|CCDS33046.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ZNF224|CCDS33046.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	4	8	0	0	34	25	37	31	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727680147	19	57292284	AG	A	420	PASS	PEG3AS	CCDS33123.1	r.?	-	-	Del	intronic	D	57292284	57292287	1	20	379.885	-	-	2	1	1	PEG3AS|CCDS33123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEG3AS|CCDS33123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	4	3	9	4	47	21	47	21	9	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727683269	2	8005249	AG	A	300	PASS	-	-	-	-	-	Del	-	D	8005249	8005251	1	6	253.898	-	-	1	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	0	9	0	26	15	26	15	9	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727685070	2	12948893	GT	G	300	PASS	-	-	-	-	-	Del	-	D	12948893	12948895	1	12	268.95	-	-	1	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	3	2	3	2	28	25	28	25	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727685927	2	15709168	AAAGTTCTGCCCTAACCTGGGC	A	290	PASS	-	-	-	-	-	Del	-	D	15709168	15709192	21	36	537.9	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	5	5	5	32	26	32	26	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727688453	2	24718982	TTTC	T	300	PASS	NCOA1	CCDS1713.1	r.?	-	-	Del	intronic	D	24718982	24718991	3	12	268.95	-	-	2	1	1	NCOA1|CCDS1713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCOA1|CCDS1713.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	3	4	18	37	18	37	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727689058	2	26410911	GCTGAC	G	269	PASS	HADHA	CCDS1721.1	r.?	-	-	Del	downstream	D	26410911	26410920	5	10	262.929	-	-	1	1	1	HADHA|CCDS1721.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FAM59B|ENST00000380681|r.2750_2754delCUGAC|c.2750_2754delCTGAC|p.D918fs*33|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	19	10	19	0	0	./.	1	4	1	5	25	29	25	29	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727690117	2	29334614	CTATGG	C	360	PASS	CLIP4	CCDS1770.1	r.?	-	-	Del	upstream	D	29334614	29334623	5	15	322.138	-	-	1	1	1	CLIP4|CCDS1770.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CLIP4|ENST00000401605|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	2	4	3	5	15	36	15	36	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727690265	2	29776303	AG	A	480	PASS	ALK	CCDS33172.1	r.?	-	-	Del	intronic	D	29776303	29776305	1	24	430.32	-	-	1	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	3	10	4	35	36	35	36	10	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727690840	2	32010500	TGCA	T	478	PASS	-	-	-	-	-	Del	-	D	32010500	32010506	3	24	484.11	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	7	2	9	3	43	28	43	28	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727694512	2	42272158	GT	G	420	PASS	PKDCC	CCDS33186.2	r.?	-	-	Del	upstream	D	42272158	42272163	1	18	376.53	-	-	4	1	1	PKDCC|CCDS33186.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PKDCC|CCDS33186.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	12	8	12	0	0	./.	5	2	6	3	36	22	36	22	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727694686	2	42816059	ATCC	A	360	PASS	MTA3	CCDS46267.1	r.?	-	-	Del	intronic	D	42816059	42816063	3	15	322.74	-	-	1	1	1	MTA3|CCDS46267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTA3|CCDS46267.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	4	15	4	0	0	./.	4	2	6	3	37	17	37	17	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727697404	2	51941919	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	51941919	51941923	2	10	266.542	-	-	1	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	1	4	0	4	16	32	16	32	1	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727698465	2	55114694	AT	A	480	PASS	EML6	CCDS46286.1	r.?	-	-	Del	intronic	D	55114694	55114700	1	21	429.115	-	-	5	1	1	EML6|CCDS46286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EML6|CCDS46286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	10	16	0	0	./.	2	6	4	8	29	35	36	35	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727700705	2	63227954	GGT	G	300	PASS	EHBP1	CCDS1872.1	r.?	-	-	Del	intronic	D	63227954	63227971	2	12	266.542	-	-	8	1	1	EHBP1|CCDS1872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EHBP1|CCDS1872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	2	38	29	38	29	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727701599	2	66064378	TG	T	298	PASS	-	-	-	-	-	Del	-	D	66064378	66064382	1	15	322.74	-	-	3	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	2	4	2	6	37	39	37	39	2	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727702805	2	69987787	ATTATG	A	329	PASS	ANXA4	CCDS1894.1	r.?	-	-	Del	intronic	D	69987787	69987795	5	12	321.536	-	-	1	1	1	ANXA4|CCDS1894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANXA4|CCDS1894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	1	5	1	7	20	36	20	36	1	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727702883	2	70199047	TC	T	420	PASS	-	-	-	-	-	Del	-	D	70199047	70199049	1	20	375.928	-	-	1	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	3	5	4	28	35	28	35	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727703002	2	70566968	C	CT	356	PASS	-	-	-	-	-	Ins	-	I	70566968	70566974	1	24	423.095	-	-	5	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	3	6	3	39	30	40	31	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727703004	2	70567303	TTCAATAC	T	290	PASS	-	-	-	-	-	Del	-	D	70567303	70567314	7	35	537.9	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	6	5	7	26	43	26	43	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727703005	2	70567531	AG	A	480	PASS	-	-	-	-	-	Del	-	D	70567531	70567534	1	24	430.32	-	-	2	1	1	-	-	./.	0	0	0	0	20	3	20	3	0	0	./.	5	3	5	3	36	29	36	29	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727705349	2	79287484	ATTC	A	627	PASS	-	-	-	-	-	Del	-	D	79287484	79287490	3	33	644.275	-	-	1	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	2	10	2	12	21	46	21	46	2	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727705639	2	80238769	TC	T	360	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80238769	80238771	1	16	317.321	-	-	1	1	-	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	3	3	4	4	28	40	28	40	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727705675	2	80426213	GGAG	GTA	689	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Complex	intronic	DI	80426214	80426216	3	49	0	-	-	0	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	6	6	0	0	27	32	27	32	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727705728	2	80765836	CT	C	562	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Del	intronic	D	80765836	80765843	1	35	537.9	-	-	6	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	4	6	5	9	32	43	32	43	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727705834	2	81110491	TA	T	360	PASS	-	-	-	-	-	Del	-	D	81110491	81110495	1	15	322.74	-	-	3	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	2	4	2	5	13	25	13	25	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727706502	2	84207245	CA	C	294	PASS	-	-	-	-	-	Del	-	D	84207245	84207251	1	36	537.9	-	-	5	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	5	5	7	7	28	29	28	29	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727706567	2	84546595	GA	G	660	PASS	-	-	-	-	-	Del	-	D	84546595	84546605	1	30	589.281	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	9	2	9	3	37	26	37	26	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727706657	2	84902712	TC	T	869	PASS	DNAH6	CCDS46348.1	r.?	-	-	Del	intronic	D	84902712	84902718	1	52	803.839	-	-	5	1	1	DNAH6|CCDS46348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH6|CCDS46348.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	20	9	20	0	0	./.	3	12	6	15	19	37	19	37	6	15	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727707857	2	88837900	ACTTTGGC	AAG	261	PASS	-	-	-	-	-	Complex	-	DI	88837901	88837907	7	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	5	4	0	0	27	22	27	22	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727710242	2	98648603	TAGTTCTCTAGGTATTCCTTAATCCATCTAGGTTGACACCTAAAATTCACCATCACATGCAAAGTATC	T	290	PASS	-	-	-	-	-	Del	-	D	98648603	98648676	67	35	537.9	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	6	0	0	29	31	33	37	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727711413	2	102650177	GC	G	449	PASS	-	-	-	-	-	Del	-	D	102650177	102650181	1	24	429.115	-	-	3	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	3	5	7	8	35	24	35	24	7	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727711877	2	104588586	TG	T	300	PASS	-	-	-	-	-	Del	-	D	104588586	104588588	1	12	267.746	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	6	4	25	24	25	24	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727713742	2	111600229	AC	A	660	PASS	ACOXL	CCDS42730.1	r.?	-	-	Del	intronic	D	111600229	111600231	1	42	588.077	-	-	1	1	1	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACOXL|CCDS42730.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	6	5	6	6	28	32	28	32	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727713945	2	112454826	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	112454826	112454835	1	20	370.509	-	-	8	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	3	5	4	28	21	28	21	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727714940	2	115564033	G	GA	420	PASS	DPP10	CCDS46400.1	r.?	-	-	Ins	intronic	I	115564033	115564039	1	20	372.315	-	-	5	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	17	15	0	0	./.	4	3	6	4	38	39	38	39	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727714999	2	115773096	AG	A	720	PASS	DPP10	CCDS46400.1	r.?	-	-	Del	intronic	D	115773096	115773098	1	40	638.857	-	-	1	1	1	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP10|CCDS46400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	9	5	10	33	43	33	43	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727715450	2	117139130	GA	G	600	PASS	-	-	-	-	-	Del	-	D	117139130	117139132	1	32	537.9	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	7	5	8	28	24	28	24	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727715477	2	117184941	AT	A	360	PASS	-	-	-	-	-	Del	-	D	117184941	117184949	1	15	310.699	-	-	7	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	2	6	3	22	25	22	25	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727715491	2	117205639	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	117205639	117205645	2	8	376.53	-	-	2	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	7	0	9	1	29	26	29	26	9	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727715683	2	117754587	ACTTT	A	478	PASS	-	-	-	-	-	Del	-	D	117754587	117754596	4	18	484.11	-	-	2	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	1	8	4	8	27	26	27	26	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727715759	2	118009657	TCTCATGAAAAAATTAGCAATAAA	T	319	PASS	-	-	-	-	-	Del	-	D	118009657	118009682	23	42	591.689	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	5	6	5	6	28	36	28	36	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727716063	2	118940909	AGG	A	300	PASS	-	-	-	-	-	Del	-	D	118940909	118940913	2	12	268.95	-	-	3	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	3	2	3	3	27	29	27	29	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727716782	2	121441504	AG	A	420	PASS	-	-	-	-	-	Del	-	D	121441504	121441508	1	14	368.101	-	-	3	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	6	5	8	28	26	28	26	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727717102	2	122844019	TTTGGGTAGATACCCAG	T	261	PASS	-	-	-	-	-	Del	-	D	122844019	122844037	16	28	483.508	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	6	3	6	3	43	26	43	26	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727717467	2	123955896	TAGTAC	T	358	PASS	-	-	-	-	-	Del	-	D	123955896	123955904	5	14	376.53	-	-	1	1	1	-	-	./.	0	0	0	0	15	3	15	3	0	0	./.	6	1	6	2	38	18	38	18	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727717469	2	123956261	GT	G	360	PASS	-	-	-	-	-	Del	-	D	123956261	123956268	1	15	322.138	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	4	3	8	29	34	29	34	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727719574	2	130685187	G	GA	253	PASS	-	-	-	-	-	Ins	-	I	130685187	130685197	1	16	319.127	-	-	9	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	3	3	4	5	24	40	24	40	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727722792	2	139453586	A	AAAAT	540	PASS	NXPH2	CCDS46421.1	r.?	-	-	Ins	intronic	I	139453586	139453610	4	30	462.435	-	-	5	1	-	NXPH2|CCDS46421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NXPH2|CCDS46421.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	5	4	6	37	42	37	42	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727723447	2	141252747	CAT	C	420	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141252747	141252754	2	18	376.53	-	-	3	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	2	10	3	30	29	30	29	10	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727724304	2	143606562	CA	C	300	PASS	-	-	-	-	-	Del	-	D	143606562	143606571	1	6	268.95	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	0	5	1	5	24	20	24	20	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727724360	2	143807010	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	143807010	143807020	1	35	531.277	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	12	0	0	./.	6	4	7	5	33	35	34	36	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727726074	2	149971784	TAGATA	T	414	PASS	LYPD6B	CCDS46423.1	r.?	-	-	Del	intronic	D	149971784	149971792	5	36	536.695	-	-	1	1	1	LYPD6B|CCDS46423.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LYPD6B|CCDS46423.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	5	5	7	5	33	30	33	30	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727727072	2	153058331	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	153058331	153058340	1	24	424.901	-	-	8	1	1	-	-	./.	0	0	0	0	19	17	20	17	0	0	./.	3	5	4	8	38	55	38	56	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727727417	2	153874774	GCTTGAGGCTTGCACCCTCTGATGCCGTAGCCTGAGCTCTACATTGGTCCCTTTCAGCCACAGCTGGAGTGGCTGGGATGCAGGGCACCAAGTCCCTAGGCTGCACATAGCACAAGGCCCGTGGCCCAGCCTACAAAACCACTTTTTCCTCCTAGACCTCTGGTCCTGTGATGGGAGGGGCTGCTGCAAAGGTTTCTGATATGCCCTGGAGACCTTTTCCCCATTGTCTTGATGGTTAACATTCAGCTCCTTATTACTTGTGCAAATTTCTGCAGCCAGCTTGAATTTCTCCTCAAAAAAATGGGATTTTCTTTTCTATTGCATTATCAGGCTGCAGATTTTCCAAACTTTTATTCTCTGTTTCACTTTTGAAACTGAATGCCTATAACAGTACCCAAGTCACCTCTTGAATGCTTTGCTTCTTATAAATTTCTCCCACCAGACACCTTAAATCGTCTCTCTCAAGTTCAAAGTTCCACAAATCTCTAGGGTGGGGTAAAATGCCACCAGTGTCTTTGCTAAAATGTAACAAGAGTCACCTTTGCTCCAGTTCCCAACAAGTTTCTCATCTCCATCGGAGACCATCTCAGTCTGGACCTTATTGTTCTTATCACTATCAGCATTTTTTCAAAGCCATTCAACAAGTCTCTAGGAAGTTCCAAA	G	319	PASS	-	-	-	-	-	Del	-	D	153874774	153875440	662	30	591.689	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	9	2	0	0	37	26	46	28	9	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727727499	2	154172657	CA	C	600	PASS	-	-	-	-	-	Del	-	D	154172657	154172666	1	32	532.481	-	-	8	1	-	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	7	3	11	4	49	32	49	32	11	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727727584	2	154449706	TCTCG	T	358	PASS	-	-	-	-	-	Del	-	D	154449706	154449714	4	20	374.121	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	3	4	4	4	20	28	20	28	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727727639	2	154650618	GA	G	300	PASS	-	-	-	-	-	Del	-	D	154650618	154650626	1	12	268.348	-	-	7	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	5	4	28	33	28	33	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727728167	2	156291541	AG	A	360	PASS	-	-	-	-	-	Del	-	D	156291541	156291543	1	12	322.74	-	-	1	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	1	5	2	7	22	25	22	25	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727730005	2	161851116	TTTCAG	TGA	584	PASS	-	-	-	-	-	Complex	-	DI	161851117	161851121	5	100	0	-	-	0	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	9	9	0	0	41	45	41	45	9	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727731503	2	167096617	TTTGGGACATTAAGCAACTTTTAAAACTGTACCCAGCTTCATCATTGGTAAAATAAGCAAAATATCATAATCTCACAGGGTTGTTTGAAAATTAAATGAGAAAATCTAAAAGAAGATTCTGAAACACAATAAGTATAAGCTAAATGAGAGCTATTACTTCTTTTTAACTTTTATTTTAGGTTTGAGGGTACATGTGAAGGTTTGTTACATAGGTAAACACGTGTCATGGGGGTTTGCTATACTTTTAAAAAATCTAGTTTAATTGGCAACCTGTCTAAGTACAAACACCAGCTTCTTGAAATATCTTTCCCTTTTCTTCCTCATATGATTTATTTAAAATACACTTTTGAGAATGCCCTCCCCAAATGTCTTCCTCTGTTTTAGACATTTTGAACAAGGAATTACTCCAAACTTTAATTTTTTTGTAATCTCCTCTCTGAAATTCTCAGTCACATATGTGAGTCAGCATGGGATAAACCTCCTTAGTTACTAGGAATACATTGCATGGTAGACACTATCATGATTTCTACTTGGATGACTCCAGGTAAGGAAAATAGAGCTTTTCTGATCACATTTTCTGTTTCTGAGAGTTGAGACTTGATAGGAAAGGAAAGCCACAGTGGGTCCCTGCAGGTTGTTGGGGAGTGTGCCAAGAATGCCAGGCTCTGCCTGCTCCTTACCTAGGACATTCCTCAGGGTTGTGTTTGCAGTGAGCAACCTTGAGACATGAGGTAGGGTCTCTGGGACAAAGAGCAGGGTTGCTTATGTTGCTTGGTATAAAAGGATGCATTCCCTAAGCTCAGTGTTCCTCAGCTGTGACATCAATCCACTATATGTGTACACACTCATTCAGGCTCATATAATGCCCCCATGAGACCTGGGTAAAGGGGGAACCAACAGAAACATGTTGAAACTCATGCTACTTTCCACACATAAGTAACAAAGTCCTTTATCTCTGACCCAAGCACCTCATATCTTCTGCCAGCATCCATGAAACAGTATCAGATCAACCTATTAGCA	T	261	PASS	SCN9A	CCDS46441.1	r.?	-	-	Del	intronic	D	167096617	167097638	1019	30	484.11	-	-	1	1	1	SCN9A|CCDS46441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN9A|CCDS46441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	4	0	0	31	36	36	40	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727731756	2	167776240	TA	T	300	PASS	XIRP2	CCDS42769.1	r.?	-	-	Del	intronic	D	167776240	167776246	1	10	268.95	-	-	5	1	1	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	4	6	10	43	40	43	40	6	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727731757	2	167776297	ATTTTC	A	329	PASS	XIRP2	CCDS42769.1	r.?	-	-	Del	intronic	D	167776297	167776306	5	15	322.74	-	-	1	1	1	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XIRP2|CCDS42769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	4	10	41	30	41	30	4	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727732103	2	168999334	GA	G	600	PASS	STK39	CCDS42770.1	r.?	-	-	Del	intronic	D	168999334	168999338	1	35	537.9	-	-	3	1	1	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	6	4	7	4	32	34	32	34	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727732177	2	169158549	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	169158549	169158568	2	12	268.95	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	2	3	46	29	46	29	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727733933	2	173519490	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	173519490	173519499	1	12	264.735	-	-	8	1	1	-	-	./.	0	0	0	0	16	9	16	10	0	0	./.	2	3	2	3	24	31	24	31	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727734320	2	174822196	GGCACTAATAAAA	G	464	PASS	SP3	CCDS2254.1	r.?	-	-	Del	intronic	D	174822196	174822212	12	80	860.639	-	-	1	1	1	SP3|CCDS2254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP3|CCDS2254.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	9	7	9	7	41	40	41	40	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727737149	2	184407239	TG	T	960	PASS	-	-	-	-	-	Del	-	D	184407239	184407243	1	65	860.639	-	-	3	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	4	12	4	14	23	32	23	32	4	14	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727737356	2	185147228	AG	A	660	PASS	-	-	-	-	-	Del	-	D	185147228	185147230	1	36	591.689	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	3	8	4	11	32	32	32	32	4	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727737775	2	187252061	AT	A	540	PASS	-	-	-	-	-	Del	-	D	187252061	187252068	1	30	482.905	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	5	8	7	30	43	30	43	8	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727738543	2	189640743	ACCTAGAAAAGAGAATT	A	261	PASS	DIRC1	CCDS2296.1	r.?	-	-	Del	intronic	D	189640743	189640760	16	28	484.11	-	-	1	1	1	DIRC1|CCDS2296.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DIRC1|CCDS2296.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	6	3	6	30	36	30	36	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727739248	2	191967198	GT	G	660	PASS	STAT4	CCDS2310.1	r.?	-	-	Del	intronic	D	191967198	191967204	1	42	591.689	-	-	5	1	1	STAT4|CCDS2310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAT4|CCDS2310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	6	5	6	7	42	37	42	37	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727739528	2	192890907	AGCCCAATAG	A	261	PASS	TMEFF2	CCDS2314.1	r.?	-	-	Del	intronic	D	192890907	192890919	9	24	480.497	-	-	1	1	1	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEFF2|CCDS2314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	7	2	9	3	30	19	30	19	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727739626	2	193169051	TA	T	780	PASS	-	-	-	-	-	Del	-	D	193169051	193169058	1	26	697.463	-	-	6	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	12	1	13	2	44	25	44	25	13	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727740114	2	195056234	A	ACTTAATCT	348	PASS	-	-	-	-	-	Ins	-	I	195056234	195056235	8	48	583.467	-	-	0	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	5	7	6	8	27	31	27	31	6	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727740668	2	196933189	AGGCGGCTAGGTTT	A	290	PASS	DNAH7	CCDS42794.1	r.?	-	-	Del	intronic	D	196933189	196933205	13	36	529.471	-	-	1	1	1	DNAH7|CCDS42794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH7|ENST00000427816|r.10_22delAAACCUAGCCGCC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	7	12	7	12	0	0	./.	5	5	5	5	20	34	20	34	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727741093	2	198271389	CAGTA	C	269	PASS	SF3B1	CCDS33356.1	r.?	-	-	Del	intronic	D	198271389	198271397	4	10	267.144	-	-	1	1	1	SF3B1|CCDS33356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SF3B1|CCDS33356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	1	4	4	4	19	26	19	26	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727744150	2	207696618	TAGAACACACCATTAAATAAATAGAGGTGA	T	261	PASS	-	-	-	-	-	Del	-	D	207696618	207696649	29	30	484.11	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	4	5	4	5	23	35	23	35	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727744646	2	209016207	AACTCTCAACAG	A	348	PASS	-	-	-	-	-	Del	-	D	209016207	209016222	11	48	645.479	-	-	1	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	5	7	5	8	30	36	30	36	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727745597	2	212082381	TC	T	300	PASS	-	-	-	-	-	Del	-	D	212082381	212082383	1	6	268.95	-	-	1	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	0	5	4	5	32	41	32	41	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727745860	2	212899367	TG	T	540	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	212899367	212899372	1	30	484.11	-	-	4	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	5	4	11	6	34	45	34	45	11	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727746428	2	214758487	AG	A	420	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	214758487	214758489	1	20	376.53	-	-	1	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	5	17	5	0	0	./.	4	3	6	6	32	35	32	35	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727748693	2	221550681	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	221550681	221550699	2	12	267.746	-	-	8	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	2	3	3	25	31	25	31	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727749141	2	223088967	AATC	AAC	480	PASS	PAX3	CCDS42826.1	r.?	-	-	Complex	intronic	DI	223088968	223088970	3	25	0	-	-	0	1	1	PAX3|CCDS42826.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	PAX3|CCDS42826.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	4	0	0	28	31	28	31	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727750356	2	226223995	ATCAAT	A	898	PASS	-	-	-	-	-	Del	-	D	226223995	226224004	5	72	860.037	-	-	1	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	11	5	14	6	56	25	56	25	14	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727753561	2	235494161	CAACATT	CATGT	656	PASS	-	-	-	-	-	Complex	-	DI	235494162	235494167	6	56	0	-	-	0	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	7	6	0	0	35	41	35	41	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727754186	2	237520257	TTGAAG	T	478	PASS	-	-	-	-	-	Del	-	D	237520257	237520267	5	28	484.11	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	6	4	7	25	28	25	28	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727755403	2	241901680	A	AATT	298	PASS	ENSG00000226321	ENST00000430980	r.?	-	-	Ins	intronic	I	241901680	241901681	3	15	311.903	-	-	0	1	1	ENSG00000226321|ENST00000430980|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000226321|ENST00000430980|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	2	4	3	4	27	16	27	16	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727757066	20	3442103	CTGACACTCT	C	319	PASS	-	-	-	-	-	Del	-	D	3442103	3442114	9	42	597.312	-	-	1	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	5	6	6	9	42	43	42	43	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727758911	20	7834015	GAGGTCTGTCTCC	G	638	PASS	-	-	-	-	-	Del	-	D	7834015	7834032	12	143	1189.2	-	-	1	1	1	-	-	./.	0	0	0	0	2	18	2	18	0	0	./.	10	12	9	13	33	35	33	35	10	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727759128	20	8479623	GT	G	420	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8479623	8479625	1	18	379.505	-	-	1	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	5	3	7	36	28	39	28	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727759131	20	8488304	TACA	T	418	PASS	PLCB1	CCDS13103.1	r.?	-	-	Del	intronic	D	8488304	8488312	3	25	433.806	-	-	2	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	4	5	10	19	37	19	37	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727759210	20	8695603	A	AC	300	PASS	PLCB1	CCDS13103.1	r.?	-	-	Ins	intronic	I	8695603	8695604	1	10	268.495	-	-	0	1	1	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLCB1|CCDS13103.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	4	1	5	1	28	27	29	27	5	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727760009	20	11028110	GTTCTTGCTGTA	G	841	PASS	-	-	-	-	-	Del	-	D	11028110	11028125	11	240	1574.73	-	-	1	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	15	14	15	16	38	46	38	46	15	16	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727760060	20	11225831	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	11225831	11225840	1	14	370.474	-	-	8	1	1	-	-	./.	0	0	0	0	25	8	25	8	0	0	./.	6	1	10	2	61	44	62	44	10	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727761408	20	14958847	AT	A	1169	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14958847	14958851	1	117	1084.22	-	-	3	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	12	8	15	11	40	54	40	54	15	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727761555	20	15291858	G	GA	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	15291858	15291867	1	15	321.592	-	-	8	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	4	2	6	4	54	49	54	49	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727763264	20	20613653	TTC	T	360	PASS	RALGAPA2	CCDS46584.1	r.?	-	-	Del	intronic	D	20613653	20613671	2	16	324	-	-	8	1	1	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	3	3	3	3	26	41	26	41	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727763546	20	21934699	AT	A	360	PASS	-	-	-	-	-	Del	-	D	21934699	21934704	1	15	324.602	-	-	4	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	2	5	3	21	29	21	29	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727763590	20	22130704	TA	T	480	PASS	-	-	-	-	-	Del	-	D	22130704	22130710	1	21	433.204	-	-	5	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	2	6	4	35	33	35	33	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727763726	20	22815878	TCTAC	T	360	PASS	-	-	-	-	-	Del	-	D	22815878	22815889	4	12	325.806	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	1	7	2	20	13	20	13	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727766708	20	30360368	A	AT	337	PASS	TPX2	CCDS13190.1	r.?	-	-	Ins	intronic	I	30360368	30360375	1	16	321.592	-	-	6	1	1	TPX2|CCDS13190.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TPX2|CCDS13190.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	7	4	41	24	41	24	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727767079	20	31659081	TC	T	300	PASS	C20orf185	CCDS13212.1	r.1241delC	c.1241delC	p.F415fs*10	Del	frameshift	D	31659081	31659084	1	12	264.883	-	-	2	1	1	C20orf185|CCDS13212.1|r.1241delC|c.1241delC|p.F415fs*10|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	C20orf185|CCDS13212.1|r.1241delC|c.1241delC|p.F415fs*10|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	7	9	7	0	0	./.	2	3	5	6	16	21	16	21	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727768927	20	37510992	AT	A	389	PASS	PPP1R16B	CCDS13309.1	r.?	-	-	Del	intronic	D	37510992	37511002	1	20	360.841	-	-	9	1	1	PPP1R16B|CCDS13309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R16B|CCDS13309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	3	4	4	9	28	27	28	27	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727768990	20	37723670	TTGGATTAGAGCCCACAGCAA	T	290	PASS	-	-	-	-	-	Del	-	D	37723670	37723693	20	35	535.786	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	4	6	4	7	26	45	26	45	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727770737	20	44009884	CT	C	269	PASS	TP53TG5	CCDS13352.1	r.?	-	-	Del	upstream	D	44009884	44009892	1	6	264.883	-	-	7	1	1	TP53TG5|CCDS13352.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TP53TG5|CCDS13352.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	14	8	14	0	0	./.	0	5	1	6	35	57	35	57	1	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727770748	20	44034572	TGCCGGCGTCGGGGG	T	290	PASS	DBNDD2	CCDS42880.1	r.?	-	-	Del	upstream	D	44034572	44034589	14	35	540	-	-	1	1	1	DBNDD2|CCDS42880.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DBNDD2|CCDS42880.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	17	11	17	0	0	./.	4	6	5	7	34	29	34	29	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727771015	20	44823780	TCCAGGCCCACCCAACTGGGAA	T	290	PASS	CDH22	CCDS13395.1	r.?	-	-	Del	intronic	D	44823780	44823805	21	27	542.409	-	-	1	1	1	CDH22|CCDS13395.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH22|CCDS13395.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	2	8	2	7	26	43	26	44	2	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727773280	20	49813640	TC	T	480	PASS	-	-	-	-	-	Del	-	D	49813640	49813642	1	25	433.806	-	-	1	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	4	8	5	48	34	48	34	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727774349	20	52226972	G	GA	420	PASS	ZNF217	ENST00000431687	r.?	-	-	Ins	upstream	I	52226972	52226979	1	20	375.893	-	-	6	1	1	ZNF217|ENST00000431687|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ZNF217|ENST00000431687|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	9	18	9	18	0	0	./.	4	3	5	3	22	41	22	42	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727774780	20	53036594	TGTCAGGTTCTTCCTAA	T	261	PASS	-	-	-	-	-	Del	-	D	53036594	53036613	16	30	488.71	-	-	1	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	4	5	4	6	43	56	43	56	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727775122	20	53990450	GT	G	420	PASS	-	-	-	-	-	Del	-	D	53990450	53990455	1	20	380.107	-	-	4	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	4	7	49	42	49	42	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727775399	20	54559620	TG	T	840	PASS	-	-	-	-	-	Del	-	D	54559620	54559622	1	63	753.592	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	8	6	8	6	49	43	49	43	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727775594	20	55038475	C	CT	600	PASS	CASS4	CCDS33492.1	r.?	-	-	Ins	downstream	I	55038475	55038483	1	27	536.99	-	-	7	1	1	CASS4|CCDS33492.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CASS4|CCDS33492.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	11	14	11	0	0	./.	2	8	7	11	55	65	55	66	7	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727776059	20	56046154	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	56046154	56046172	2	12	264.281	-	-	8	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	3	2	3	42	56	42	56	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727776241	20	56740657	CCACTCCCAATGCCAGCCTCGT	C	290	PASS	C20orf85	CCDS13465.1	r.?	-	-	Del	downstream	D	56740657	56740681	21	32	533.378	-	-	1	1	1	C20orf85|CCDS13465.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C20orf85|CCDS13465.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	14	16	14	0	0	./.	3	7	4	7	54	59	54	59	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727777112	20	59269452	AC	A	300	PASS	ENSG00000237240	ENST00000456299	r.?	-	-	Del	intronic	D	59269452	59269456	1	12	271.505	-	-	3	1	1	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	2	3	29	26	29	26	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727777113	20	59269613	AAAT	A	418	PASS	ENSG00000237240	ENST00000456299	r.?	-	-	Del	intronic	D	59269613	59269619	3	21	434.408	-	-	1	1	1	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	6	2	8	5	44	27	44	27	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727783000	21	16281426	ACTCAACGTATGTGTAGTTTGCACTCCACAATTACAGTGTGATGATATTGATGATATTTTGTCTTACTGTGTCCTTGTCCTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGATAGGGT	A	278	PASS	-	-	-	-	-	Del	-	D	16281426	16281547	116	35	539.454	-	-	1	1	-	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	6	4	0	0	20	25	26	29	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727783348	21	17506257	A	AC	480	PASS	-	-	-	-	-	Ins	-	I	17506257	17506258	1	21	430.118	-	-	0	1	1	-	-	./.	0	0	0	0	12	11	13	11	0	0	./.	2	6	4	6	34	30	34	30	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727786716	21	26328367	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	26328367	26328377	1	21	430.118	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	6	2	6	3	29	28	30	28	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727788855	21	32051348	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	32051348	32051358	1	56	698.942	-	-	9	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	7	6	7	8	34	36	34	36	7	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727790763	21	37427588	C	CA	477	PASS	SETD4	CCDS13640.1	r.?	-	-	Ins	intronic	I	37427588	37427595	1	24	428.914	-	-	6	1	1	SETD4|CCDS13640.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SETD4|CCDS13640.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	5	3	8	3	42	28	43	29	8	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727791191	21	38371253	TA	T	300	PASS	-	-	-	-	-	Del	-	D	38371253	38371258	1	12	271.232	-	-	4	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	4	7	26	28	26	28	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727792019	21	40440063	TG	T	540	PASS	-	-	-	-	-	Del	-	D	40440063	40440066	1	30	489.301	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	5	5	7	22	30	22	30	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727793455	21	44230482	TGGAAGC	TTG	298	PASS	-	-	-	-	-	Complex	-	DI	44230483	44230488	6	15	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	4	0	0	24	32	24	32	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727793958	21	45665443	TC	T	360	PASS	ICOSLG	CCDS42952.1	r.?	-	-	Del	upstream	D	45665443	45665448	1	16	326.201	-	-	4	1	1	ICOSLG|CCDS42952.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ICOSLG|CCDS42952.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	14	8	14	0	0	./.	3	3	5	5	36	17	36	17	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727793959	21	45665877	CACGGTGCAGGCGCTCCGAAG	C	290	PASS	DNMT3L	CCDS13705.1	r.?	-	-	Del	downstream	D	45665877	45665901	20	35	543.668	-	-	1	1	1	DNMT3L|CCDS13705.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	DNMT3L|CCDS13705.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	14	11	14	11	0	0	./.	4	6	4	6	30	19	30	20	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727794741	21	48096960	TCTCCACATCCTCTC	TTTA	334	PASS	-	-	-	-	-	Complex	-	DI	48096961	48096974	14	48	0	-	-	0	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	7	5	0	0	35	31	35	31	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727802014	22	35686482	C	CA	374	PASS	HMGXB4	CCDS33641.1	r.?	-	-	Ins	intronic	I	35686482	35686489	1	20	376.169	-	-	6	1	1	HMGXB4|CCDS33641.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HMGXB4|CCDS33641.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	12	12	0	0	./.	4	3	7	4	30	26	30	26	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727803633	22	40269348	GT	G	360	PASS	ENTHD1	CCDS13998.1	r.?	-	-	Del	intronic	D	40269348	40269350	1	16	327.591	-	-	1	1	1	ENTHD1|CCDS13998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENTHD1|CCDS13998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	3	3	4	4	38	32	38	32	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727808011	3	1695013	TC	T	540	PASS	-	-	-	-	-	Del	-	D	1695013	1695015	1	24	485.084	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	7	2	9	2	43	35	43	35	9	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727808335	3	2486488	AC	A	449	PASS	CNTN4	CCDS43041.1	r.?	-	-	Del	intronic	D	2486488	2486490	1	24	431.186	-	-	1	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	5	4	7	26	32	26	32	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727808745	3	3513433	TAAAA	T	480	PASS	-	-	-	-	-	Del	-	D	3513433	3513442	4	24	431.186	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	5	3	7	5	45	37	45	37	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727809625	3	5725635	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	5725635	5725653	2	12	269.491	-	-	8	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	2	3	2	24	55	24	55	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727810921	3	9425696	TA	T	838	PASS	THUMPD3	CCDS2573.1	r.?	-	-	Del	intronic	D	9425696	9425705	1	72	807.269	-	-	8	1	1	THUMPD3|CCDS2573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THUMPD3|CCDS2573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	7	8	8	8	56	32	56	32	8	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727811366	3	10432375	A	AC	360	PASS	ATP2B2	CCDS2601.1	r.?	-	-	Ins	intronic	I	10432375	10432379	1	12	319.777	-	-	3	1	1	ATP2B2|CCDS2601.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP2B2|CCDS2601.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	16	0	0	./.	5	1	6	3	39	35	41	35	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727812032	3	12396269	AAG	A	300	PASS	PPARG	CCDS2610.2	r.?	-	-	Del	intronic	D	12396269	12396273	2	6	267.685	-	-	1	1	-	PPARG|CCDS2610.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPARG|CCDS2610.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	5	0	3	0	42	14	42	14	5	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727813542	3	16619982	AG	A	360	PASS	-	-	-	-	-	Del	-	D	16619982	16619984	1	7	323.389	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	6	0	6	0	34	26	34	26	6	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727814619	3	20644578	AC	A	360	PASS	-	-	-	-	-	Del	-	D	20644578	20644581	1	15	322.787	-	-	2	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	4	2	4	4	17	28	17	28	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727814788	3	21097767	CCA	C	720	PASS	-	-	-	-	-	Del	-	D	21097767	21097772	2	33	646.779	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	10	2	11	2	42	26	42	26	11	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727815242	3	22330015	AT	A	720	PASS	-	-	-	-	-	Del	-	D	22330015	22330021	1	49	646.779	-	-	5	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	6	6	8	6	35	37	35	37	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727815689	3	23895969	ACTGT	A	720	PASS	UBE2E1	CCDS2638.1	r.?	-	-	Del	intronic	D	23895969	23895979	4	48	646.779	-	-	2	1	1	UBE2E1|CCDS2638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE2E1|CCDS2638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	7	6	7	29	27	29	27	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727816628	3	27119493	ATTCTGTTC	A	377	PASS	-	-	-	-	-	Del	-	D	27119493	27119504	8	54	700.677	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	5	8	6	9	34	31	34	31	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727816960	3	27994488	GGAGGGAACGCTGAAAAGATTT	G	261	PASS	-	-	-	-	-	Del	-	D	27994488	27994512	21	30	483.88	-	-	1	1	1	-	-	./.	0	0	0	0	23	11	23	11	0	0	./.	4	5	4	3	27	20	27	22	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727818250	3	32169546	TTTTCCACGATTTCTTTTGTA	T	348	PASS	GPD1L	CCDS33729.1	r.249-21_249-2del20	c.48-21_48-2del20	p.?	Del	ess splice	D	32169546	32169567	20	48	644.973	-	-	1	1	1	GPD1L|CCDS33729.1|r.249-21_249-2del20|c.48-21_48-2del20|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:intron:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000188:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001627:SO:0001576	GPD1L|CCDS33729.1|r.249-21_249-2del20|c.48-21_48-2del20|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:intron:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000188:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001627:SO:0001576	./.	0	0	0	0	20	9	20	9	0	0	./.	7	5	8	4	42	41	42	42	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727818443	3	32621834	A	AT	509	PASS	-	-	-	-	-	Ins	-	I	32621834	32621842	1	24	477.859	-	-	7	1	1	-	-	./.	0	0	0	0	15	12	16	12	0	0	./.	7	2	9	5	50	35	50	36	9	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727819265	3	35351496	CAAAGGGGAGG	C	319	PASS	-	-	-	-	-	Del	-	D	35351496	35351509	10	36	591.074	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	8	4	8	26	36	26	36	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727823940	3	53186357	CAACCGGCAAGGAAGCCA	C	348	PASS	PRKCD	ENST00000478843	r.?	-	-	Del	upstream	D	53186357	53186375	17	49	645.575	-	-	1	1	1	PRKCD|ENST00000478843|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PRKCD|ENST00000478843|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	19	10	19	10	0	0	./.	6	6	6	6	32	21	32	21	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727825846	3	59865644	CA	C	360	PASS	FHIT	CCDS2894.1	r.?	-	-	Del	intronic	D	59865644	59865646	1	7	309.542	-	-	1	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	8	4	8	0	0	./.	0	6	0	8	10	17	10	17	0	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727827923	3	67044179	TG	T	420	PASS	KBTBD8	ENST00000417314	r.?	-	-	Del	upstream	D	67044179	67044181	1	20	377.288	-	-	1	1	1	KBTBD8|ENST00000417314|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KBTBD8|ENST00000417314|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	3	6	32	25	32	25	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727829888	3	73788904	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	73788904	73788906	1	24	426.369	-	-	1	1	1	-	-	./.	0	0	0	0	18	21	19	22	0	0	./.	3	5	5	6	23	38	24	38	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727830190	3	75011402	C	CA	389	PASS	-	-	-	-	-	Ins	-	I	75011402	75011409	1	18	365.246	-	-	6	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	5	2	6	7	20	30	20	30	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727830381	3	75682123	ACACAAGGCAGTGCTAATGAGCAGG	ACAAGGCCGTGCTAATGAGCAGG	291	PASS	MIR1324	ENST00000408868	r.?	-	-	Complex	downstream	DI	75682124	75682147	24	36	0	-	-	0	1	1	MIR1324|ENST00000408868|r.?|-|-|non_protein_coding:indel:5KB_downstream_variant|SO:0000011:SO:1000032:SO:0001633	MIR1324|ENST00000408868|r.?|-|-|non_protein_coding:indel:5KB_downstream_variant|SO:0000011:SO:1000032:SO:0001633	./.	0	0	0	0	21	27	21	27	0	0	./.	8	3	0	0	83	47	83	47	8	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727831970	3	77595516	G	GAGATC	627	PASS	ROBO2	CCDS43109.1	r.1862_1863insagauc	c.962_963insAGATC	p.V325fs*9	Ins	frameshift	I	77595516	77595526	5	48	610.655	-	-	1	1	1	ROBO2|CCDS43109.1|r.1862_1863insagauc|c.962_963insAGATC|p.V325fs*9|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ROBO2|CCDS43109.1|r.1862_1863insagauc|c.962_963insAGATC|p.V325fs*9|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	23	9	23	9	0	0	./.	5	7	5	8	34	25	34	25	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727832140	3	78171764	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	78171764	78171774	1	14	370.063	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	1	6	3	36	30	38	30	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727832516	3	79368128	TTA	T	480	PASS	ROBO1	ENST00000464233	r.?	-	-	Del	intronic	D	79368128	79368132	2	25	431.186	-	-	1	1	1	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	4	6	6	27	42	27	42	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727832573	3	79752271	AATCTAAATAGTTGTGCCCTATTAGCATATGAAAATGTCTCAAAATTGATCATTTCTATGCTTTCTATCACTTTCATATGTCCTAACATATAACATATGAAAATGTCTTAAAATGTATTATTTCTATCATAATTAGTATCCATTTTTTAGAACAGAATACATCCTTCTTTTCATTTTAATTATAATTAATCTATTTAATTAAGAAGAACAATTTATACATCTTCCAAAATACAGCTTTTAGTCCAATGTGTATCTGATAAGCATTTTAAATAATCCTGAATCTCTTAATATAATGAAAATAATAACTATTTTTATTAATGCCTGGGGTATAAAAATTTAGTAATTATCTACATTTTGTTCCAAAG	ATGACC	290	PASS	ROBO1	ENST00000464233	r.?	-	-	Complex	intronic	DI	79752272	79752635	364	35	0	-	-	0	1	1	ROBO1|ENST00000464233|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	ROBO1|ENST00000464233|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	20	8	20	0	0	./.	4	6	0	0	19	23	23	29	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727832753	3	80330352	GT	G	480	PASS	-	-	-	-	-	Del	-	D	80330352	80330355	1	24	431.186	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	3	13	5	36	36	36	36	13	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727832754	3	80330390	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	80330390	80330394	1	12	266.481	-	-	3	1	1	-	-	./.	0	0	0	0	13	15	13	16	0	0	./.	2	3	6	5	30	40	30	40	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727832858	3	80595529	TA	T	869	PASS	-	-	-	-	-	Del	-	D	80595529	80595535	1	66	808.473	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	10	5	11	31	41	31	41	5	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727833517	3	83111226	AG	A	300	PASS	-	-	-	-	-	Del	-	D	83111226	83111228	1	12	269.491	-	-	1	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	2	3	5	3	32	28	32	28	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727839330	3	105952158	TC	T	540	PASS	-	-	-	-	-	Del	-	D	105952158	105952160	1	30	485.084	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	4	5	5	7	32	29	32	29	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727840058	3	108249654	AATCAAAATGGACCT	AGAATC	348	PASS	MYH15	CCDS43127.1	r.?	-	-	Complex	upstream	DI	108249655	108249668	14	48	0	-	-	0	1	1	MYH15|CCDS43127.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	MYH15|CCDS43127.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	./.	0	0	0	0	15	25	15	25	0	0	./.	5	7	0	0	42	43	42	43	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727841405	3	112121921	ATTTTCAAAACAATAAGCCCTAATAAAACAGTATGAAGCCAACTAAATTTT	A	319	PASS	-	-	-	-	-	Del	-	D	112121921	112121981	50	40	592.88	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	7	4	0	1	27	31	34	34	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727841713	3	113034546	CA	C	540	PASS	WDR52	ENST00000393845	r.?	-	-	Del	intronic	D	113034546	113034548	1	18	485.084	-	-	1	1	1	WDR52|ENST00000393845|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR52|ENST00000393845|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	8	1	9	3	42	35	42	35	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727841786	3	113297829	CATTTTCACCTAT	C	261	PASS	SIDT1	CCDS2974.1	r.?	-	-	Del	intronic	D	113297829	113297847	12	30	485.084	-	-	1	1	1	SIDT1|CCDS2974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIDT1|CCDS2974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	5	4	5	5	29	23	29	23	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727843352	3	118390079	CA	C	540	PASS	-	-	-	-	-	Del	-	D	118390079	118390083	1	10	483.278	-	-	3	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	0	9	1	11	23	44	23	44	1	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727843387	3	118511564	CA	C	420	PASS	-	-	-	-	-	Del	-	D	118511564	118511572	1	20	374.879	-	-	7	1	1	-	-	./.	0	0	0	0	6	17	6	17	0	0	./.	4	3	6	5	29	37	29	37	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727847129	3	131261671	GT	G	300	PASS	CPNE4	CCDS3072.1	r.?	-	-	Del	intronic	D	131261671	131261673	1	6	269.491	-	-	1	1	1	CPNE4|CCDS3072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE4|CCDS3072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	5	0	5	0	46	34	46	34	5	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727848207	3	134730125	AT	A	900	PASS	EPHB1	CCDS46921.1	r.?	-	-	Del	intronic	D	134730125	134730133	1	70	805.463	-	-	7	1	1	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHB1|CCDS46921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	6	9	7	12	26	40	26	40	7	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727848832	3	136753982	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	136753982	136753990	2	15	323.389	-	-	3	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	6	3	26	15	26	15	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727849719	3	140064540	GCCACTCAG	GGAT	261	PASS	CLSTN2	CCDS3112.1	r.?	-	-	Complex	intronic	DI	140064541	140064548	8	30	0	-	-	0	1	1	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CLSTN2|CCDS3112.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	5	4	0	0	34	13	34	13	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727849824	3	140570502	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	140570502	140570503	1	12	266.481	-	-	0	1	1	-	-	./.	0	0	0	0	11	16	12	16	0	0	./.	3	2	5	3	42	28	42	29	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727850699	3	143199011	T	TA	300	PASS	SLC9A9	CCDS33872.1	r.?	-	-	Ins	intronic	I	143199011	143199018	1	10	264.073	-	-	6	1	1	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC9A9|CCDS33872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	1	4	2	5	23	37	23	37	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727852726	3	150063159	CA	C	720	PASS	-	-	-	-	-	Del	-	D	150063159	150063164	1	45	646.177	-	-	4	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	8	4	10	4	41	27	41	27	10	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727852968	3	150631073	CTTG	C	598	PASS	-	-	-	-	-	Del	-	D	150631073	150631082	3	40	592.278	-	-	2	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	7	5	9	30	34	30	34	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727853123	3	151120394	TG	T	540	PASS	MED12L	CCDS33876.1	r.?	-	-	Del	intronic	D	151120394	151120400	1	24	483.88	-	-	5	1	1	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MED12L|CCDS33876.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	7	2	7	4	33	30	33	30	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727853304	3	151481704	CA	C	360	PASS	-	-	-	-	-	Del	-	D	151481704	151481710	1	15	322.185	-	-	5	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	2	4	3	5	28	25	28	25	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727854436	3	155182294	CTTTGAAA	C	261	PASS	PLCH1	ENST00000494598	r.?	-	-	Del	intronic	D	155182294	155182305	7	30	485.084	-	-	1	1	1	PLCH1|ENST00000494598|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCH1|ENST00000494598|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	4	8	5	28	28	28	28	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727854787	3	156333272	TTTATGACATGTGTCAGATAAA	T	319	PASS	-	-	-	-	-	Del	-	D	156333272	156333297	21	42	592.88	-	-	1	1	1	-	-	./.	0	0	0	0	6	20	6	20	0	0	./.	5	6	4	4	31	36	32	38	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727855050	3	157430090	GA	G	840	PASS	-	-	-	-	-	Del	-	D	157430090	157430092	1	64	754.575	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	7	7	10	39	39	39	39	7	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727855761	3	159883361	CACATAAAG	C	261	PASS	-	-	-	-	-	Del	-	D	159883361	159883373	8	18	484.482	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	8	1	9	1	36	22	36	22	9	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727856229	3	161743769	CT	C	540	PASS	-	-	-	-	-	Del	-	D	161743769	161743773	1	28	485.084	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	6	5	8	30	43	30	43	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727857941	3	167122084	AAACAAAAAAATAAGCG	A	319	PASS	-	-	-	-	-	Del	-	D	167122084	167122103	16	30	592.88	-	-	1	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	2	9	2	9	29	32	29	32	2	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727858001	3	167562823	CA	C	480	PASS	-	-	-	-	-	Del	-	D	167562823	167562825	1	21	429.982	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	2	6	5	34	33	34	33	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727858774	3	170498717	TCTTTTA	T	348	PASS	CLDN11	ENST00000486975	r.?	-	-	Del	intronic	D	170498717	170498727	6	48	646.779	-	-	1	1	1	CLDN11|ENST00000486975|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	CLDN11|ENST00000486975|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	7	5	9	5	38	37	38	37	9	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727860413	3	175855872	CA	C	360	PASS	-	-	-	-	-	Del	-	D	175855872	175855874	1	15	320.981	-	-	1	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	4	2	6	4	32	36	32	36	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727863150	3	184685927	ATAGTGT	A	261	PASS	VPS8	CCDS46971.1	r.?	-	-	Del	intronic	D	184685927	184685935	6	30	485.084	-	-	1	1	1	VPS8|CCDS46971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS8|CCDS46971.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	4	5	5	5	36	25	36	25	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727863209	3	184818733	GA	G	360	PASS	C3orf70	CCDS33900.1	r.?	-	-	Del	intronic	D	184818733	184818735	1	16	322.185	-	-	1	1	1	C3orf70|CCDS33900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf70|CCDS33900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	3	3	4	5	38	29	38	29	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727864193	3	187761690	CTTCTGAACACTGATTTAGGCATGATGGAT	C	348	PASS	-	-	-	-	-	Del	-	D	187761690	187761723	29	40	646.779	-	-	1	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	3	9	3	5	21	34	22	38	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727864549	3	188673374	TTGATATAACCTTTAAAG	T	348	PASS	TPRG1	CCDS3292.1	r.?	-	-	Del	intronic	D	188673374	188673394	17	48	645.575	-	-	1	1	1	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	7	5	7	5	40	29	40	29	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727864550	3	188673921	AAAAC	A	327	PASS	TPRG1	CCDS3292.1	r.?	-	-	Del	intronic	D	188673921	188673931	4	20	376.083	-	-	2	1	1	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TPRG1|CCDS3292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	4	3	7	24	35	24	35	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727864892	3	189706053	CT	C	720	PASS	LEPREL1	CCDS3294.1	r.?	-	-	Del	intronic	D	189706053	189706058	1	45	646.177	-	-	4	1	1	LEPREL1|CCDS3294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LEPREL1|CCDS3294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	8	7	9	39	32	39	32	7	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727865266	3	190694652	GT	G	300	PASS	-	-	-	-	-	Del	-	D	190694652	190694659	1	12	269.491	-	-	6	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	3	3	3	23	20	23	20	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727865466	3	191173085	AT	A	480	PASS	-	-	-	-	-	Del	-	D	191173085	191173093	1	24	422.155	-	-	7	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	6	5	28	43	28	43	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727866293	3	193784459	CTGAAAAATCATT	C	290	PASS	-	-	-	-	-	Del	-	D	193784459	193784475	12	35	538.982	-	-	1	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	4	6	4	7	31	27	31	27	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727866295	3	193785657	AGCAAG	A	538	PASS	-	-	-	-	-	Del	-	D	193785657	193785667	5	36	538.982	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	5	6	5	33	27	33	27	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727867781	4	47655	A	AGAAGAAGAC	377	PASS	-	-	-	-	-	Ins	-	I	47655	47658	9	50	620.562	-	-	0	1	-	-	-	./.	0	0	0	0	101	34	103	37	0	0	./.	9	4	10	5	201	124	204	124	11	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727870236	4	7398233	AG	A	449	PASS	SORCS2	CCDS47008.1	r.?	-	-	Del	intronic	D	7398233	7398236	1	21	429.586	-	-	2	1	1	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS2|CCDS47008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	6	2	8	2	32	28	32	28	8	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727872206	4	14366246	CT	C	540	PASS	-	-	-	-	-	Del	-	D	14366246	14366255	1	24	482.231	-	-	8	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	7	2	8	7	43	31	43	31	8	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727873623	4	19047221	GTATGTTAA	G	261	PASS	-	-	-	-	-	Del	-	D	19047221	19047233	8	28	484.037	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	6	3	8	19	35	19	35	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727874818	4	22747515	AT	A	420	PASS	-	-	-	-	-	Del	-	D	22747515	22747519	1	20	376.942	-	-	3	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	4	3	4	3	32	34	32	34	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727875293	4	24099050	GC	G	660	PASS	-	-	-	-	-	Del	-	D	24099050	24099054	1	42	591.735	-	-	3	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	5	6	8	10	26	42	26	42	8	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727877354	4	29954720	CTTGGCCTCTTTATG	C	261	PASS	-	-	-	-	-	Del	-	D	29954720	29954737	14	28	484.639	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	6	3	6	30	23	30	23	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727877630	4	31082481	GC	G	300	PASS	PCDH7	CCDS43220.1	r.?	-	-	Del	intronic	D	31082481	31082483	1	10	269.244	-	-	1	1	1	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH7|CCDS43220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	1	4	3	5	28	31	28	31	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727879607	4	37512400	CCTT	C	358	PASS	C4orf19	CCDS3442.1	r.?	-	-	Del	intronic	D	37512400	37512407	3	20	368.513	-	-	2	1	1	C4orf19|CCDS3442.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C4orf19|CCDS3442.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	5	4	25	25	25	25	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727882419	4	45070121	CT	C	300	PASS	-	-	-	-	-	Del	-	D	45070121	45070125	1	12	269.244	-	-	3	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	3	2	3	2	28	30	28	30	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727882827	4	46433856	AG	A	420	PASS	GABRA2	ENST00000510861	r.?	-	-	Del	intronic	D	46433856	46433858	1	20	376.942	-	-	1	1	1	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	4	3	5	4	22	26	22	26	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727885368	4	54851063	CATATTA	C	261	PASS	AC110792.1	ENST00000511394	r.?	-	-	Del	intronic	D	54851063	54851074	6	28	478.619	-	-	1	1	1	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	3	6	3	9	22	32	22	32	3	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727885526	4	55236489	GC	G	536	PASS	-	-	-	-	-	Del	-	D	55236489	55236492	1	42	591.133	-	-	2	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	6	5	6	5	25	34	25	34	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727888748	4	64501616	TA	T	420	PASS	-	-	-	-	-	Del	-	D	64501616	64501622	1	20	375.135	-	-	5	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	4	3	6	4	43	27	43	27	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727888837	4	64743276	T	TG	269	PASS	-	-	-	-	-	Ins	-	I	64743276	64743278	1	10	262.621	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	1	4	1	5	24	29	24	30	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727889775	4	67210332	GC	G	420	PASS	-	-	-	-	-	Del	-	D	67210332	67210334	1	20	376.942	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	3	5	4	26	29	26	29	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727892283	4	75507454	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	75507454	75507471	2	12	269.244	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	36	28	36	28	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727894319	4	81989499	AGAAG	AC	509	PASS	-	-	-	-	-	Complex	-	DI	81989500	81989503	4	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	4	0	0	29	27	29	27	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727896251	4	88113863	GTACT	G	389	PASS	KLHL8	CCDS3617.1	r.?	-	-	Del	intronic	D	88113863	88113871	4	18	375.737	-	-	1	1	1	KLHL8|CCDS3617.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL8|CCDS3617.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	2	5	3	4	37	22	37	22	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727897282	4	91499634	AAGAATTTTTTC	A	319	PASS	FAM190A	CCDS47100.1	r.?	-	-	Del	intronic	D	91499634	91499649	11	42	591.735	-	-	1	1	1	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	5	6	7	8	30	42	30	42	7	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727897994	4	94193456	C	CT	840	PASS	GRID2	CCDS3637.1	r.?	-	-	Ins	intronic	I	94193456	94193460	1	63	743.648	-	-	3	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	18	12	0	0	./.	8	6	10	7	33	43	34	43	10	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727898258	4	95012835	AG	A	600	PASS	-	-	-	-	-	Del	-	D	95012835	95012838	1	20	537.886	-	-	2	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	1	9	3	11	40	47	40	47	3	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727898317	4	95144264	A	AC	300	PASS	SMARCAD1	CCDS47101.1	r.?	-	-	Ins	intronic	I	95144264	95144271	1	12	266.234	-	-	6	1	1	SMARCAD1|CCDS47101.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMARCAD1|CCDS47101.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	5	3	33	32	34	32	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727899127	4	97461413	TA	T	720	PASS	-	-	-	-	-	Del	-	D	97461413	97461417	1	48	646.185	-	-	3	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	7	7	9	39	42	39	42	7	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727899231	4	97901153	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	97901153	97901154	1	12	266.234	-	-	0	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	2	3	4	4	28	17	28	17	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727900066	4	100633206	GA	G	360	PASS	-	-	-	-	-	Del	-	D	100633206	100633208	1	15	323.093	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	5	3	32	43	32	43	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727900705	4	102696933	C	CAG	360	PASS	BANK1	ENST00000504592	r.?	-	-	Ins	intronic	I	102696933	102696947	2	12	312.858	-	-	6	1	1	BANK1|ENST00000504592|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BANK1|ENST00000504592|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	6	18	6	0	0	./.	5	1	6	2	41	16	42	16	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727901585	4	105580850	CT	C	300	PASS	-	-	-	-	-	Del	-	D	105580850	105580854	1	10	269.244	-	-	3	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	1	6	1	36	34	36	34	6	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727901654	4	105827204	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	105827204	105827214	1	10	265.632	-	-	9	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	1	4	1	4	48	43	49	43	1	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727902050	4	107090594	GAA	G	420	PASS	TBCK	CCDS3673.1	r.?	-	-	Del	intronic	D	107090594	107090599	2	14	374.533	-	-	4	1	1	TBCK|CCDS3673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBCK|CCDS3673.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	1	6	2	6	25	45	25	45	2	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727902129	4	107451428	TC	T	480	PASS	-	-	-	-	-	Del	-	D	107451428	107451430	1	24	428.382	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	5	3	7	5	41	44	41	44	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727903561	4	111589374	CAGGTCACTGATTAAAATTATGCCAAAATAATATCTTTCTCTCTTCTAGGAATACATTTCTCTGTTTGGTTGTACACTTATACTGATACAGTAGAACCAGCCCAGCTGAATAAATTAGGACGGGTTAGGGGTATGTCATTCGTCAAATTATATGATTGTAAAAGTGGAAGGCTGCCAGATTTGGCTGGAACAGCAATAGCTTTCCTATGCTTGGCAAAGGATCTGAATATTTGGTTGAACCAATTTTACCATGGCACATGAAGTTCCTTGGTTAGTAAATGCTTGTATTATATCAGAGCCAAGAGGGTGGACACATACACTGAATTGAAACATAGGGAAAATCTTGGTTATCATCTTACTGATAAACTCAGTTATATGAGTTATGTTTATGCGTTGATTCCTTTGTGCAAAGGTGACATGTCGATCTAACCCCTTTGTTTTTGCCGACTAGTCAATAATTATATCATAGCTACTTAACTTTTTCAGAGTGTTTATTTTTGAATAGACAGCACATTTTTATTATTATATAGATATTGCTATGACATGGTATTTTGATATAAACATGCTCTAAAAACATAACTTTGAAGGAAAATCCAAGATTTTCGAAATTATTAGAGAGTTCTAGCTCTCCCAAATCAGGGAATCTCAAAGAAAGCGCCTTTCTTTTACCCTCACCCCCTGGCCTGGATTTCACAGGCAACAGCTTTTTTGCAGTTGTAAAGTTAGTCTTCAAATATAAACCGAGATCCTGGGCTTCATTACTGTTGTTGGCCAGAAAACTAGAGTCAGTGTTATCTCTAAGTTTGTGAAATTCAGAAAAAACAGCTCTGTGGTGGCAGGGCTAGAATTTTATAGCCTGGGTAAAGAATGCCATTGAAGTTGTCAGACTCATAAACTTAAAATGTTTAGATCTTTTGGAGGGAGGGAGCATGGTGTGATGGTGGAAGCAAAGAACTCCAAGTCTTCAGGACAATGTTTTCTTCCCAAGACTCATACATTCTCATACATTTTTACAACTTCAGACCAGTGTCTTCCTGCCTCAGTTTCTCCACCTACACAATGGAATAATTGTAAGAATTAACATAGCTTTGCTTGAGATCACAGTTTAG	C	261	PASS	-	-	-	-	-	Del	-	D	111589374	111590486	1108	30	469.588	-	-	1	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	5	4	0	0	22	30	27	34	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727903609	4	111784759	AC	A	360	PASS	MIR297	ENST00000401142	r.?	-	-	Del	upstream	D	111784759	111784762	1	15	323.093	-	-	2	1	1	MIR297|ENST00000401142|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	MIR297|ENST00000401142|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	6	13	6	13	0	0	./.	4	2	4	2	34	28	34	28	4	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727903738	4	112255453	TTAATAAATTATGGTA	T	261	PASS	-	-	-	-	-	Del	-	D	112255453	112255474	15	18	484.639	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	8	1	8	30	43	30	43	1	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727905121	4	116583694	A	ACC	480	PASS	-	-	-	-	-	Ins	-	I	116583694	116583696	2	16	421.157	-	-	1	1	-	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	1	7	2	9	25	36	25	36	2	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727905259	4	117004757	AG	A	660	PASS	-	-	-	-	-	Del	-	D	117004757	117004762	1	42	591.133	-	-	4	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	5	6	7	7	52	47	52	47	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727905411	4	117379908	CTGAGAAAAGAAAACCATCA	CTCATT	435	PASS	-	-	-	-	-	Complex	-	DI	117379909	117379927	19	66	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	10	0	0	37	45	37	46	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727905684	4	118320586	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	118320586	118320596	1	15	319.48	-	-	9	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	5	7	43	51	45	53	5	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727906335	4	120530328	T	TA	360	PASS	PDE5A	CCDS3713.1	r.?	-	-	Ins	intronic	I	120530328	120530338	1	16	312.858	-	-	9	1	1	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	7	4	52	30	53	31	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727906337	4	120535684	TCGCTCATTTTATCATTGAGAG	T	319	PASS	PDE5A	CCDS3713.1	r.?	-	-	Del	intronic	D	120535684	120535709	21	40	590.531	-	-	1	1	1	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE5A|CCDS3713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	4	7	4	6	37	39	37	40	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727907405	4	123608806	GA	G	480	PASS	-	-	-	-	-	Del	-	D	123608806	123608812	1	24	430.79	-	-	5	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	5	4	7	24	41	24	41	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727907615	4	124261978	GAATGAACTACAGCCACATGCAGATGGGTGAATCTTAGCAATGTAATGGAAACGAAAGTCGCAAAACATATACTACACGATACCTTTTATACAGTTTAAAGTAGCTA	G	261	PASS	-	-	-	-	-	Del	-	D	124261978	124262087	106	30	484.037	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	5	0	0	46	30	50	35	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727908228	4	126085006	TC	T	360	PASS	-	-	-	-	-	Del	-	D	126085006	126085008	1	15	323.093	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	2	8	5	35	57	35	57	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727910133	4	131900986	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	131900986	131901006	2	15	322.491	-	-	9	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	6	2	49	47	49	47	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727911125	4	134844053	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	134844053	134844059	1	12	265.03	-	-	5	1	1	-	-	./.	0	0	0	0	13	14	13	16	0	0	./.	3	2	4	4	34	34	35	34	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727911308	4	135717157	ACATAGCAGGAC	A	290	PASS	-	-	-	-	-	Del	-	D	135717157	135717172	11	32	531.263	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	7	4	9	31	40	31	40	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727911309	4	135718654	TAGG	T	305	PASS	-	-	-	-	-	Del	-	D	135718654	135718660	3	20	376.942	-	-	1	1	1	-	-	./.	0	0	0	0	3	12	3	12	0	0	./.	3	4	3	4	24	30	24	31	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727911968	4	137553981	ACAT	A	329	PASS	-	-	-	-	-	Del	-	D	137553981	137553988	3	16	323.093	-	-	2	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	3	3	4	3	36	26	36	26	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727914639	4	146091640	TTGCTTTGTCTACCCAGC	T	522	PASS	OTUD4	CCDS47139.1	r.?	-	-	Del	intronic	D	146091640	146091659	17	96	969.278	-	-	1	1	1	OTUD4|CCDS47139.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTUD4|CCDS47139.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	22	24	22	0	0	./.	11	7	10	6	38	36	39	37	11	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727915130	4	147769154	A	AT	420	PASS	TTC29	CCDS47141.1	r.?	-	-	Ins	intronic	I	147769154	147769163	1	14	372.727	-	-	8	1	1	TTC29|CCDS47141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC29|CCDS47141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	6	1	7	1	35	27	35	27	7	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727915186	4	147992184	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	147992184	147992194	1	12	266.234	-	-	9	1	1	-	-	./.	0	0	0	0	11	21	13	21	0	0	./.	3	2	3	2	34	35	34	36	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727915311	4	148340606	GT	G	660	PASS	-	-	-	-	-	Del	-	D	148340606	148340610	1	40	592.337	-	-	3	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	4	7	5	8	24	35	24	35	5	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727915587	4	149125365	CTTA	C	509	PASS	NR3C2	CCDS3772.1	r.?	-	-	Del	intronic	D	149125365	149125373	3	10	484.639	-	-	2	1	1	NR3C2|CCDS3772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR3C2|CCDS3772.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	9	0	11	1	32	21	32	21	11	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727915813	4	149869117	AGTTGGGGTAACAT	A	377	PASS	-	-	-	-	-	Del	-	D	149869117	149869133	13	54	700.034	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	5	8	5	9	31	43	31	43	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727918711	4	159223054	CTATCCAAGATGTGGTTCCCTAGAAGCAGAG	CAGAAT	406	PASS	-	-	-	-	-	Complex	-	DI	159223055	159223084	30	55	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	10	0	0	26	22	27	26	4	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727919776	4	162219798	CT	C	420	PASS	-	-	-	-	-	Del	-	D	162219798	162219805	1	14	376.942	-	-	6	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	1	6	3	9	34	33	34	33	3	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727920620	4	164700352	TC	T	329	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	164700352	164700354	1	16	323.093	-	-	1	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	3	3	6	3	29	30	29	30	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727922490	4	169904277	AGTTG	A	536	PASS	CBR4	CCDS3812.1	r.?	-	-	Del	downstream	D	169904277	169904285	4	42	592.337	-	-	1	1	1	CBR4|CCDS3812.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CBR4|ENST00000419710|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	6	5	7	7	32	49	32	49	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727922731	4	170762320	AT	A	420	PASS	-	-	-	-	-	Del	-	D	170762320	170762327	1	20	375.737	-	-	6	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	3	4	4	4	41	21	41	21	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727923346	4	172688986	AT	A	540	PASS	-	-	-	-	-	Del	-	D	172688986	172688990	1	30	484.639	-	-	3	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	4	6	6	32	37	32	37	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727923564	4	173303591	A	AT	360	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Ins	intronic	I	173303591	173303598	1	15	319.48	-	-	6	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	13	24	0	0	./.	4	2	5	5	30	41	30	41	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727923780	4	173890552	G	GA	300	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Ins	intronic	I	173890552	173890559	1	10	265.03	-	-	6	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	17	18	0	0	./.	4	1	5	2	32	37	32	37	5	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727924197	4	175125931	TC	T	540	PASS	-	-	-	-	-	Del	-	D	175125931	175125933	1	24	484.037	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	7	4	10	19	37	19	37	4	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727924883	4	177184651	GA	G	480	PASS	ASB5	CCDS3827.1	r.?	-	-	Del	intronic	D	177184651	177184661	1	24	430.79	-	-	9	1	1	ASB5|CCDS3827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB5|CCDS3827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	3	7	3	32	34	32	34	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727924884	4	177185048	GA	G	840	PASS	ASB5	CCDS3827.1	r.?	-	-	Del	intronic	D	177185048	177185057	1	60	753.281	-	-	8	1	1	ASB5|CCDS3827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB5|CCDS3827.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	5	9	6	13	31	40	31	40	6	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727925479	4	178708954	TA	T	660	PASS	ENSG00000231171	ENST00000507870	r.?	-	-	Del	intronic	D	178708954	178708959	1	40	592.337	-	-	4	1	1	ENSG00000231171|ENST00000507870|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000231171|ENST00000507870|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	7	4	9	7	39	35	39	35	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727925588	4	178945861	AC	A	420	PASS	-	-	-	-	-	Del	-	D	178945861	178945866	1	20	370.921	-	-	4	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	3	6	3	37	31	37	31	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727925626	4	179037080	GT	G	720	PASS	-	-	-	-	-	Del	-	D	179037080	179037085	1	48	646.185	-	-	4	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	5	7	7	9	35	42	35	42	7	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727926441	4	181177508	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	181177508	181177517	1	16	314.664	-	-	8	1	1	-	-	./.	0	0	0	0	18	20	18	21	0	0	./.	3	3	4	4	29	35	29	35	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727926755	4	181811368	TG	T	269	PASS	-	-	-	-	-	Del	-	D	181811368	181811372	1	12	268.04	-	-	3	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	2	3	3	26	20	26	20	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727927907	4	184704204	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	184704204	184704212	1	63	741.842	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	15	0	0	./.	8	6	10	6	36	35	36	35	10	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727928296	4	185660558	ATAGTCCAGACT	A	261	PASS	-	-	-	-	-	Del	-	D	185660558	185660572	11	30	482.231	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	5	4	4	17	31	17	32	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727929072	4	187657927	AG	A	329	PASS	-	-	-	-	-	Del	-	D	187657927	187657929	1	15	321.287	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	4	2	4	2	30	25	30	25	4	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727930045	4	190040934	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	190040934	190040942	1	16	319.48	-	-	7	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	5	3	41	26	41	26	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727930172	4	190267715	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	190267715	190267724	1	10	265.632	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	15	16	0	0	./.	4	1	4	1	49	33	50	33	4	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727932926	5	4057365	AAGCATTCAACAAAATCC	A	348	PASS	-	-	-	-	-	Del	-	D	4057365	4057388	17	48	646.165	-	-	1	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	7	5	6	4	37	29	38	30	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727933177	5	4851580	ACT	A	300	PASS	ENSG00000224867	ENST00000416839	r.?	-	-	Del	intronic	D	4851580	4851585	2	6	269.737	-	-	2	1	1	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	0	5	1	6	16	43	16	43	1	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727934353	5	8175999	CTTGGAA	C	290	PASS	-	-	-	-	-	Del	-	D	8175999	8176008	6	35	539.475	-	-	1	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	4	6	4	6	27	25	27	25	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727935104	5	10452845	TA	T	327	PASS	ROPN1L	CCDS3879.1	r.?	-	-	Del	intronic	D	10452845	10452850	1	18	377.03	-	-	4	1	1	ROPN1L|CCDS3879.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROPN1L|CCDS3879.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	9	22	9	0	0	./.	2	5	3	6	42	33	42	33	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727937862	5	18907534	AT	A	480	PASS	-	-	-	-	-	Del	-	D	18907534	18907544	1	21	430.978	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	2	6	3	9	18	39	18	39	3	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727939735	5	24530596	AG	A	509	PASS	CDH10	CCDS3892.1	r.?	-	-	Del	intronic	D	24530596	24530601	1	28	485.527	-	-	4	1	1	CDH10|CCDS3892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDH10|CCDS3892.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	6	3	6	3	35	19	35	19	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727940185	5	25722613	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	25722613	25722622	1	14	372.816	-	-	8	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	1	6	3	7	29	24	29	25	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727940805	5	27782822	CACTA	C	449	PASS	-	-	-	-	-	Del	-	D	27782822	27782828	4	16	431.58	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	1	7	2	10	22	34	22	34	2	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727940900	5	28059091	CA	C	360	PASS	-	-	-	-	-	Del	-	D	28059091	28059097	1	15	323.685	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	2	7	4	27	18	27	18	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727941160	5	28806114	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	28806114	28806130	2	12	269.737	-	-	7	1	1	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	3	2	3	2	27	31	27	31	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727941225	5	28975349	CT	C	600	PASS	-	-	-	-	-	Del	-	D	28975349	28975357	1	35	539.475	-	-	7	1	1	-	-	./.	0	0	0	0	16	28	16	28	0	0	./.	4	6	5	6	40	36	40	36	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727941881	5	30572574	AG	A	360	PASS	-	-	-	-	-	Del	-	D	30572574	30572576	1	15	323.083	-	-	1	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	2	4	3	5	24	22	24	22	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727947385	5	51893536	A	ATGAT	625	PASS	-	-	-	-	-	Ins	-	I	51893536	51893540	4	44	669.408	-	-	0	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	10	3	10	3	35	27	36	27	10	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727947429	5	52001320	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	52001320	52001330	1	24	423.151	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	17	14	0	0	./.	5	3	7	4	40	42	41	43	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727947508	5	52191207	AGCTCTCCCGGTG	ATAATCTGGT	261	PASS	ITGA1	CCDS3955.1	r.?	-	-	Complex	intronic	DI	52191208	52191219	12	24	0	-	-	0	1	1	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	2	7	0	0	20	34	20	34	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727949194	5	56902995	GTCACCATAT	G	435	PASS	-	-	-	-	-	Del	-	D	56902995	56903008	9	72	808.61	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	8	7	9	7	27	34	27	34	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727949456	5	57749968	G	GA	300	PASS	PLK2	CCDS3974.1	r.2800_2801insu	c.?	p.?	Ins	3'UTR variant	I	57749968	57749977	1	12	264.921	-	-	8	1	1	PLK2|CCDS3974.1|r.2800_2801insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	PLK2|CCDS3974.1|r.2800_2801insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	15	18	16	0	0	./.	3	2	2	4	32	30	32	30	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727949980	5	59707722	AG	A	360	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59707722	59707725	1	15	323.685	-	-	2	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	4	4	6	29	31	29	31	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727950745	5	62578835	AG	A	360	PASS	-	-	-	-	-	Del	-	D	62578835	62578839	1	16	319.47	-	-	3	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	3	3	3	4	17	24	17	24	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727950892	5	62965153	GGTAAATATGGAAAGGAAAGACCATTACAAGTCA	G	290	PASS	-	-	-	-	-	Del	-	D	62965153	62965187	33	36	539.475	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	5	4	5	19	29	20	30	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727950914	5	63027967	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	63027967	63027977	1	16	318.266	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	14	16	0	0	./.	3	3	5	4	28	31	29	31	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727952235	5	67532815	GT	G	480	PASS	PIK3R1	CCDS3993.1	r.?	-	-	Del	intronic	D	67532815	67532820	1	24	431.58	-	-	4	1	1	PIK3R1|CCDS3993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3R1|CCDS3993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	3	8	3	39	36	39	36	8	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727952532	5	68482438	ATTGTTA	AATTGG	507	PASS	CENPH	CCDS3998.1	r.?	-	-	Complex	upstream	DI	68482439	68482444	6	35	0	-	-	0	1	1	CENPH|CCDS3998.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	CENPH|CCDS3998.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	14	15	14	15	0	0	./.	6	4	0	0	30	31	30	31	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727953205	5	72274884	GGCCTGAAATT	G	261	PASS	FCHO2	CCDS47230.1	r.?	-	-	Del	intronic	D	72274884	72274895	10	10	485.527	-	-	1	1	1	FCHO2|CCDS47230.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FCHO2|CCDS47230.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	0	9	0	11	27	31	27	31	0	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727954204	5	75534129	A	ATG	420	PASS	SV2C	ENST00000502798	r.?	-	-	Ins	intronic	I	75534129	75534145	2	20	369.203	-	-	7	1	-	SV2C|ENST00000502798|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SV2C|ENST00000502798|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	11	15	0	0	./.	3	4	5	5	33	31	33	31	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727956899	5	83961678	AT	A	480	PASS	-	-	-	-	-	Del	-	D	83961678	83961685	1	21	430.978	-	-	6	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	6	2	8	6	40	32	40	32	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727956965	5	84093609	GA	G	660	PASS	-	-	-	-	-	Del	-	D	84093609	84093613	1	36	593.422	-	-	3	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	8	4	10	37	39	37	39	4	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727960579	5	97135881	CA	C	420	PASS	-	-	-	-	-	Del	-	D	97135881	97135883	1	20	375.224	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	6	5	27	30	27	30	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727960910	5	98233384	TCTGAATTCCAAGTTATCCCTATG	T	261	PASS	CHD1	CCDS34204.1	r.?	-	-	Del	intronic	D	98233384	98233408	23	24	484.925	-	-	1	1	1	CHD1|CCDS34204.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD1|CCDS34204.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	7	2	6	1	36	26	37	27	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727962597	5	103928391	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	103928391	103928395	1	24	423.753	-	-	3	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	5	3	7	5	32	32	32	32	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727962658	5	104086608	CT	C	540	PASS	ENSG00000232402	ENST00000438939	r.?	-	-	Del	intronic	D	104086608	104086614	1	30	485.527	-	-	5	1	1	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232402|ENST00000438939|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	5	7	6	35	27	35	27	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727964808	5	111234715	A	AT	480	PASS	C5orf13	CCDS47255.1	r.?	-	-	Ins	intronic	I	111234715	111234716	1	24	426.161	-	-	0	1	1	C5orf13|CCDS47255.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C5orf13|CCDS47255.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	5	3	11	30	48	30	49	3	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727966120	5	115705410	TAACTCCGGATTCCAGGAGGA	T	377	PASS	AC010296.1	ENST00000510440	r.941_960del20	-	-	Del	non-coding variant	D	115705410	115705435	20	56	700.715	-	-	1	1	1	AC010296.1|ENST00000510440|r.941_960del20|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	AC010296.1|ENST00000510440|r.941_960del20|-|-|non_protein_coding:exon:deletion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000159:SO:0001619	./.	0	0	0	0	15	17	15	17	0	0	./.	6	7	4	4	32	25	34	28	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727970651	5	130797733	TTCA	T	687	PASS	FNIP1	ENST00000514667	r.2738_2740delUGA	c.2676_2678delTGA	p.D892delD	Del	inframe	D	130797733	130797739	3	44	701.317	-	-	1	1	1	FNIP1|ENST00000514667|r.2738_2740delUGA|c.2676_2678delTGA|p.D892delD|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	FNIP1|ENST00000514667|r.2738_2740delUGA|c.2676_2678delTGA|p.D892delD|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	4	13	4	13	0	0	./.	3	10	4	12	24	48	24	48	4	12	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727974468	5	144543161	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	144543161	144543168	1	12	266.727	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	3	3	28	40	29	40	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727974850	5	145906724	GT	G	480	PASS	-	-	-	-	-	Del	-	D	145906724	145906729	1	25	429.171	-	-	4	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	4	7	6	34	32	34	32	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727975280	5	147276070	GA	G	720	PASS	C5orf46	CCDS34267.1	r.?	-	-	Del	intronic	D	147276070	147276076	1	40	647.37	-	-	5	1	1	C5orf46|CCDS34267.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	C5orf46|CCDS34267.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	9	3	12	3	34	25	34	25	12	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727976263	5	150926733	TA	T	420	PASS	FAT2	CCDS4317.1	r.?	-	-	Del	intronic	D	150926733	150926739	1	20	377.632	-	-	5	1	1	FAT2|CCDS4317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAT2|CCDS4317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	3	6	4	43	24	43	24	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727976936	5	153004224	AG	A	360	PASS	GRIA1	CCDS4322.1	r.?	-	-	Del	intronic	D	153004224	153004231	1	15	323.685	-	-	6	1	1	GRIA1|CCDS4322.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIA1|CCDS4322.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	2	4	4	4	24	19	24	19	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727978700	5	158965762	AG	A	540	PASS	-	-	-	-	-	Del	-	D	158965762	158965764	1	30	484.925	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	4	7	4	23	35	23	35	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727979854	5	162670187	GT	G	254	PASS	-	-	-	-	-	Del	-	D	162670187	162670191	1	18	377.03	-	-	3	1	1	-	-	./.	0	0	0	0	5	18	5	18	0	0	./.	2	5	3	4	28	25	28	25	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727980358	5	164331701	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	164331701	164331702	1	28	479.507	-	-	0	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	6	3	7	3	32	34	32	34	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727981006	5	166484788	TC	T	720	PASS	-	-	-	-	-	Del	-	D	166484788	166484791	1	49	640.145	-	-	2	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	6	6	6	30	25	30	25	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727981224	5	167189029	AGCGCT	A	478	PASS	-	-	-	-	-	Del	-	D	167189029	167189037	5	30	484.323	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	4	5	6	36	35	36	35	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727981905	5	169381684	CTGGGCCCTTTCAAACTTGTTGTTGTTGTTGTTTGTTTATT	C	377	PASS	DOCK2	CCDS4371.1	r.?	-	-	Del	intronic	D	169381684	169381727	40	54	697.705	-	-	1	1	1	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOCK2|CCDS4371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	8	5	4	0	24	32	27	37	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727982551	5	171539318	TAC	T	300	PASS	STK10	CCDS34290.1	r.?	-	-	Del	intronic	D	171539318	171539335	2	12	268.533	-	-	8	1	1	STK10|CCDS34290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK10|CCDS34290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	2	3	3	23	42	23	42	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727984051	5	175677785	AC	A	389	PASS	C5orf25	CCDS4398.2	r.?	-	-	Del	intronic	D	175677785	175677789	1	18	377.632	-	-	3	1	1	C5orf25|CCDS4398.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf25|CCDS4398.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	2	5	4	6	32	32	32	32	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727985074	5	178388320	AC	A	360	PASS	ZNF454	CCDS4441.1	r.?	-	-	Del	intronic	D	178388320	178388322	1	15	320.674	-	-	1	1	1	ZNF454|CCDS4441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF454|CCDS4441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	4	2	5	5	23	18	23	18	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727985822	5	180255624	AG	A	780	PASS	-	-	-	-	-	Del	-	D	180255624	180255627	1	54	701.317	-	-	2	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	8	5	10	6	36	33	36	33	10	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727988442	6	7226704	GACATTTGTTGTGTCACCTTTCGAAC	G	261	PASS	RREB1	CCDS34335.1	r.1250_1274del25	c.713_737del25	p.C240fs*37	Del	frameshift	D	7226704	7226734	25	30	485.638	-	-	1	1	1	RREB1|CCDS34335.1|r.1250_1274del25|c.713_737del25|p.C240fs*37|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	RREB1|CCDS34335.1|r.1250_1274del25|c.713_737del25|p.C240fs*37|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	15	11	15	0	0	./.	4	5	4	3	43	30	43	32	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727988993	6	8573509	TCAGTGATTTTTGCCA	T	348	PASS	AL135912.1	ENST00000498984	r.?	-	-	Del	intronic	D	8573509	8573528	15	45	647.517	-	-	1	1	1	AL135912.1|ENST00000498984|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL135912.1|ENST00000498984|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	4	8	4	7	19	32	19	33	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727990664	6	13258509	CCTGGGAGGCGGAGGTTGTAGTGAG	C	348	PASS	PHACTR1	ENST00000379350	r.?	-	-	Del	intronic	D	13258509	13258537	24	49	644.507	-	-	1	1	1	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	6	6	5	7	28	38	29	38	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727990798	6	13559147	GGCTGGGACAGA	G	319	PASS	-	-	-	-	-	Del	-	D	13559147	13559165	11	40	592.955	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	7	4	8	5	41	23	41	23	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727994570	6	23133018	TAACACTGAGAGAGAC	T	348	PASS	-	-	-	-	-	Del	-	D	23133018	23133036	15	45	647.517	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	8	4	8	26	29	26	29	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727995612	6	25578806	TA	T	600	PASS	LRRC16A	ENST00000329474	r.?	-	-	Del	intronic	D	25578806	25578812	1	36	538.995	-	-	5	1	1	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	5	7	7	41	36	41	36	7	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727995870	6	26346759	AATCC	A	389	PASS	-	-	-	-	-	Del	-	D	26346759	26346765	4	20	377.718	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	3	4	3	6	23	34	23	34	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727996530	6	28316904	A	ATATACATGTCTCATATACATAGGTG	300	PASS	ZNF323	CCDS4649.1	r.?	-	-	Ins	intronic	I	28316904	28316909	25	12	193.939	-	-	0	1	-	ZNF323|CCDS4649.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF323|CCDS4649.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	2	3	0	0	30	21	30	21	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727997394	6	30121987	AC	A	660	PASS	TRIM10	CCDS34375.1	r.1280delG	c.1204delG	p.V402fs*4	Del	frameshift	D	30121987	30121993	1	42	589.343	-	-	5	1	1	TRIM10|CCDS34375.1|r.1280delG|c.1204delG|p.V402fs*4|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TRIM10|CCDS34375.1|r.1280delG|c.1204delG|p.V402fs*4|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	15	8	15	8	0	0	./.	6	5	6	5	19	26	19	26	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727998512	6	32213703	AC	A	660	PASS	-	-	-	-	-	Del	-	D	32213703	32213708	1	40	585.73	-	-	4	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	7	4	8	38	28	38	28	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2727999468	6	33007058	GA	G	660	PASS	-	-	-	-	-	Del	-	D	33007058	33007063	1	40	593.557	-	-	4	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	7	5	10	19	37	19	37	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728001835	6	39141649	AAAGGACCT	A	290	PASS	-	-	-	-	-	Del	-	D	39141649	39141659	8	36	539.597	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	5	6	5	43	25	43	26	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728002125	6	40230979	TGCCTGTAGTCCCACAACTTTGGGACTACAGGATCTCTGGCTCAAG	T	348	PASS	-	-	-	-	-	Del	-	D	40230979	40231028	45	49	647.517	-	-	1	1	1	-	-	./.	0	0	0	0	15	28	15	28	0	0	./.	6	6	1	2	28	26	33	30	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728002128	6	40234736	GC	G	420	PASS	-	-	-	-	-	Del	-	D	40234736	40234740	1	20	373.504	-	-	3	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	4	3	5	35	30	35	30	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728003706	6	45309738	T	TA	300	PASS	RUNX2	CCDS43467.1	r.?	-	-	Ins	intronic	I	45309738	45309748	1	10	263.778	-	-	9	1	1	RUNX2|CCDS43467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RUNX2|CCDS43467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	1	4	2	5	35	42	35	42	2	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728005072	6	50159565	CT	C	660	PASS	-	-	-	-	-	Del	-	D	50159565	50159570	1	40	591.751	-	-	4	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	7	8	11	44	35	44	35	8	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728005381	6	51391718	GTGGGGCCAAGTCTA	G	290	PASS	-	-	-	-	-	Del	-	D	51391718	51391733	14	35	539.597	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	6	4	6	26	26	26	26	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728006620	6	55374494	TAA	T	540	PASS	HMGCLL1	CCDS43475.1	r.?	-	-	Del	intronic	D	55374494	55374503	2	28	484.434	-	-	8	1	1	HMGCLL1|CCDS43475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGCLL1|CCDS43475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	6	3	8	4	30	38	30	38	8	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728006622	6	55376872	ATTAAGAGGGT	A	464	PASS	HMGCLL1	CCDS43475.1	r.?	-	-	Del	intronic	D	55376872	55376889	10	81	861.55	-	-	1	1	1	HMGCLL1|CCDS43475.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGCLL1|ENST00000428842|r.2428_2437delACCCUCUUAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	11	9	11	0	0	./.	8	8	8	8	35	40	35	40	8	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728009207	6	63593830	AC	A	329	PASS	-	-	-	-	-	Del	-	D	63593830	63593832	1	15	323.758	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	6	5	25	30	25	30	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728011070	6	68927063	GT	G	480	PASS	-	-	-	-	-	Del	-	D	68927063	68927065	1	21	431.678	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	6	3	7	31	32	31	32	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728011242	6	69605672	G	GT	420	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	69605672	69605682	1	18	366.279	-	-	9	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	19	10	0	0	./.	2	5	5	6	36	28	36	28	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728013550	6	77978360	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	77978360	77978376	2	12	269.197	-	-	7	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	3	2	29	25	29	25	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728014333	6	80666619	TA	T	338	PASS	-	-	-	-	-	Del	-	D	80666619	80666623	1	14	377.718	-	-	3	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	6	1	6	2	25	17	25	17	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728015317	6	83584271	GA	G	660	PASS	-	-	-	-	-	Del	-	D	83584271	83584281	1	40	593.557	-	-	9	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	7	4	8	6	30	28	30	28	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728015448	6	84301952	ATG	A	420	PASS	SNAP91	CCDS47455.1	r.?	-	-	Del	intronic	D	84301952	84301958	2	14	377.116	-	-	2	1	1	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	6	1	6	1	18	21	18	21	6	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728015653	6	85258523	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	85258523	85258531	1	18	480.219	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	8	1	8	4	31	26	31	26	8	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728022042	6	108575264	GAACTTGCAGTGAGC	G	290	PASS	SNX3	CCDS5064.1	r.?	-	-	Del	intronic	D	108575264	108575279	14	32	526.954	-	-	1	1	1	SNX3|CCDS5064.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX3|CCDS5064.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	7	3	6	3	24	18	25	18	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728023103	6	112998478	TG	T	300	PASS	-	-	-	-	-	Del	-	D	112998478	112998484	1	12	264.38	-	-	5	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	2	4	3	19	24	19	24	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728024401	6	117836135	AG	A	329	PASS	DCBLD1	CCDS34522.1	r.?	-	-	Del	intronic	D	117836135	117836137	1	15	311.717	-	-	1	1	1	DCBLD1|CCDS34522.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCBLD1|CCDS34522.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	2	5	2	29	14	29	14	5	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728029285	6	136142143	CTTTTATGTGCTCCTCAGGGCAG	C	377	PASS	-	-	-	-	-	Del	-	D	136142143	136142168	22	50	701.477	-	-	1	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	4	9	3	7	20	26	21	28	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728030398	6	140620748	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	140620748	140620758	1	12	265.584	-	-	9	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	2	3	2	3	37	22	38	22	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728031077	6	143280414	GC	G	780	PASS	-	-	-	-	-	Del	-	D	143280414	143280417	1	50	700.875	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	9	6	11	21	29	21	29	6	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728031953	6	147114091	AG	A	360	PASS	C6orf103	CCDS47498.1	r.?	-	-	Del	intronic	D	147114091	147114093	1	15	320.146	-	-	1	1	1	C6orf103|CCDS47498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf103|CCDS47498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	2	4	3	5	16	20	16	20	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728035060	6	157785366	A	AAC	329	PASS	-	-	-	-	-	Ins	-	I	157785366	157785368	2	7	302.686	-	-	0	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	6	0	1	0	26	17	26	17	6	0	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728035610	6	159395296	AG	A	869	PASS	RSPH3	CCDS5260.1	r.?	-	-	Del	downstream	D	159395296	159395298	1	66	806.386	-	-	1	1	1	RSPH3|CCDS5260.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RSPH3|CCDS5260.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	23	16	23	16	0	0	./.	10	5	14	7	50	21	50	21	14	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728037771	6	166593945	CTCGATACTG	C	290	PASS	-	-	-	-	-	Del	-	D	166593945	166593957	9	32	538.393	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	7	3	7	5	28	29	28	29	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728038006	6	167385848	GCCATCCCACTTTC	G	290	PASS	-	-	-	-	-	Del	-	D	167385848	167385866	13	36	539.597	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	5	5	6	18	26	18	26	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728040220	7	3836603	CT	C	300	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3836603	3836613	1	10	269.822	-	-	9	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	1	4	2	4	22	29	22	29	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728040677	7	5143554	GTGG	GAC	433	PASS	-	-	-	-	-	Complex	-	DI	5143555	5143557	3	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	6	3	0	0	30	31	30	31	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728042777	7	10144553	TTGCCACATATCTTTC	T	319	PASS	-	-	-	-	-	Del	-	D	10144553	10144573	15	40	592.404	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	4	7	4	7	33	48	33	48	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728043637	7	12511077	GT	G	360	PASS	-	-	-	-	-	Del	-	D	12511077	12511083	1	16	323.184	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	4	5	37	40	37	40	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728043799	7	12859615	ATTAAGTGAATTGAAATCCCAC	A	377	PASS	-	-	-	-	-	Del	-	D	12859615	12859640	21	50	696.72	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	9	4	9	35	44	35	44	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728044455	7	14686960	AAAC	A	538	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14686960	14686987	3	32	539.644	-	-	8	1	-	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	3	10	3	35	43	35	43	10	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728044915	7	15989568	TG	T	360	PASS	-	-	-	-	-	Del	-	D	15989568	15989574	1	16	321.98	-	-	5	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	3	4	5	21	25	21	25	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728045212	7	16872624	TACCCCATA	T	377	PASS	AGR2	ENST00000412973	r.?	-	-	Del	intronic	D	16872624	16872634	8	44	701.537	-	-	1	1	1	AGR2|ENST00000412973|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	AGR2|ENST00000412973|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	3	10	4	11	37	46	37	46	4	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728045389	7	17454343	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	17454343	17454345	1	15	320.174	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	2	6	2	50	28	51	29	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728045390	7	17454655	AG	A	360	PASS	-	-	-	-	-	Del	-	D	17454655	17454658	1	7	323.786	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	0	6	2	8	34	43	34	43	2	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728046013	7	19436268	TG	T	420	PASS	-	-	-	-	-	Del	-	D	19436268	19436276	1	20	377.751	-	-	7	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	4	3	5	9	34	33	34	33	5	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728046093	7	19779854	G	GA	480	PASS	TMEM196	CCDS34607.2	r.?	-	-	Ins	intronic	I	19779854	19779861	1	16	426.898	-	-	6	1	1	TMEM196|CCDS34607.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM196|CCDS34607.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	1	7	2	9	37	49	37	49	2	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728046393	7	20786842	TTTGTTTTATGTATTGTGAA	TTATAA	290	PASS	ABCB5	CCDS5371.1	r.?	-	-	Complex	intronic	DI	20786843	20786861	19	36	0	-	-	0	1	1	ABCB5|CCDS5371.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ABCB5|CCDS5371.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	5	5	0	0	48	43	50	43	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728046922	7	22033829	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	22033829	22033843	2	12	269.822	-	-	6	1	-	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	2	3	2	3	40	35	40	35	2	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728047823	7	24363965	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	24363965	24363974	1	20	372.332	-	-	8	1	1	-	-	./.	0	0	0	0	20	23	20	23	0	0	./.	4	3	6	5	34	37	34	37	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728049022	7	27927542	CAGGCAGAGGAATAA	C	261	PASS	JAZF1	CCDS5416.1	r.?	-	-	Del	intronic	D	27927542	27927560	14	30	485.077	-	-	1	1	1	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JAZF1|CCDS5416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	5	4	4	4	41	36	42	36	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728049292	7	28761884	TTGGAAGGCTC	T	290	PASS	CREB5	CCDS5417.1	r.?	-	-	Del	intronic	D	28761884	28761899	10	36	539.644	-	-	1	1	1	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREB5|CCDS5417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	5	6	5	32	40	32	40	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728049821	7	30244320	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	30244320	30244338	2	12	269.822	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	3	2	30	31	30	31	3	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728052129	7	36723455	CG	C	960	PASS	AOAH	CCDS5448.1	r.?	-	-	Del	intronic	D	36723455	36723459	1	77	860.42	-	-	3	1	1	AOAH|CCDS5448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AOAH|CCDS5448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	6	10	11	11	27	29	27	29	11	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728052339	7	37286878	AG	A	360	PASS	ELMO1	CCDS5449.1	r.?	-	-	Del	intronic	D	37286878	37286880	1	16	323.786	-	-	1	1	1	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	3	3	6	3	42	18	42	18	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728052627	7	37932458	TG	T	480	PASS	TXNDC3	CCDS5452.1	r.?	-	-	Del	intronic	D	37932458	37932466	1	24	431.715	-	-	7	1	1	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TXNDC3|CCDS5452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	4	17	4	0	0	./.	5	3	7	3	41	22	41	22	7	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728053587	7	40322707	TG	T	420	PASS	C7orf10	ENST00000309930	r.?	-	-	Del	intronic	D	40322707	40322711	1	20	377.751	-	-	3	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	3	4	7	5	40	37	40	37	7	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728053740	7	40737613	CAGGT	C	449	PASS	C7orf10	ENST00000309930	r.?	-	-	Del	intronic	D	40737613	40737620	4	25	431.113	-	-	1	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	4	4	4	39	28	39	28	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728056188	7	48873493	GA	G	360	PASS	-	-	-	-	-	Del	-	D	48873493	48873502	1	16	323.786	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	3	6	6	28	28	28	28	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728056189	7	48874723	AT	A	360	PASS	-	-	-	-	-	Del	-	D	48874723	48874728	1	16	323.786	-	-	4	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	5	6	22	34	22	34	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728056318	7	49345072	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	49345072	49345079	1	35	533.021	-	-	6	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	6	4	8	6	30	33	31	33	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728057189	7	52115673	TA	T	480	PASS	-	-	-	-	-	Del	-	D	52115673	52115677	1	25	431.715	-	-	3	1	1	-	-	./.	0	0	0	0	4	19	4	19	0	0	./.	4	4	4	4	12	31	12	31	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728058233	7	55253501	GCACCAAACTA	G	261	PASS	EGFR	CCDS5514.1	r.?	-	-	Del	intronic	D	55253501	55253515	10	28	485.077	-	-	1	1	1	EGFR|CCDS5514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EGFR|CCDS5514.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	3	6	3	6	17	26	17	26	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728060499	7	61910965	TA	T	840	PASS	-	-	-	-	-	Del	-	D	61910965	61910971	1	48	754.899	-	-	5	1	1	-	-	./.	0	0	0	0	34	32	34	32	0	0	./.	11	3	13	5	67	60	67	60	13	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728062332	7	66293889	AACTCCTGGACTCAGG	ATCT	290	PASS	-	-	-	-	-	Complex	-	DI	66293890	66293904	15	32	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	7	0	0	26	42	28	42	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728065047	7	73386025	TACTGGG	TAC	540	PASS	-	-	-	-	-	Complex	-	DI	73386026	73386031	6	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	3	0	0	40	26	40	26	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728065238	7	73933689	TGTGTGAAACA	T	261	PASS	GTF2IRD1	CCDS5571.1	r.?	-	-	Del	intronic	D	73933689	73933701	10	30	483.873	-	-	1	1	1	GTF2IRD1|CCDS5571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTF2IRD1|CCDS5571.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	4	5	5	29	33	29	33	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728066083	7	76761878	A	AT	269	PASS	CCDC146	CCDS34671.1	r.?	-	-	Ins	intronic	I	76761878	76761879	1	12	260.791	-	-	0	1	-	CCDC146|CCDS34671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCDC146|CCDS34671.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	3	4	11	17	11	17	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728067573	7	81265910	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	81265910	81265916	1	35	532.419	-	-	5	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	4	6	4	7	18	29	18	30	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728068418	7	83892662	GTCAGACT	G	290	PASS	SEMA3A	ENST00000424555	r.?	-	-	Del	intronic	D	83892662	83892673	7	32	538.44	-	-	1	1	1	SEMA3A|ENST00000424555|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEMA3A|ENST00000424555|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	3	7	3	8	19	36	19	36	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728068780	7	85243535	TA	T	360	PASS	-	-	-	-	-	Del	-	D	85243535	85243541	1	16	320.776	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	3	8	4	28	35	28	35	8	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728073534	7	102447010	G	GT	300	PASS	FAM185A	CCDS47677.1	r.?	-	-	Ins	intronic	I	102447010	102447018	1	12	261.393	-	-	7	1	1	FAM185A|CCDS47677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM185A|CCDS47677.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	23	24	23	0	0	./.	2	3	4	5	26	26	26	26	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728076342	7	112608626	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	112608626	112608631	1	12	266.812	-	-	4	1	1	-	-	./.	0	0	0	0	10	8	11	8	0	0	./.	3	2	4	4	21	26	21	27	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728076716	7	114331298	AT	A	389	PASS	FOXP2	CCDS43635.1	r.3915delU	c.?	p.?	Del	3'UTR variant	D	114331298	114331306	1	20	377.751	-	-	7	1	1	FOXP2|CCDS43635.1|r.3915delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FOXP2|CCDS43635.1|r.3915delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	6	8	6	0	0	./.	4	3	4	5	15	30	15	30	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728077930	7	119259757	TGTTTGGAGAGAATGAG	T	261	PASS	-	-	-	-	-	Del	-	D	119259757	119259777	16	30	485.679	-	-	1	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	4	5	4	4	23	25	23	26	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728082322	7	133820376	T	TG	420	PASS	LRGUK	CCDS5830.1	r.?	-	-	Ins	intronic	I	133820376	133820381	1	18	372.332	-	-	4	1	1	LRGUK|CCDS5830.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRGUK|CCDS5830.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	2	5	3	9	19	22	19	22	3	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728082979	7	135690978	TC	T	420	PASS	-	-	-	-	-	Del	-	D	135690978	135690980	1	20	377.148	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	3	6	4	30	17	30	17	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728083054	7	135965203	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	135965203	135965212	1	12	312.949	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	5	1	6	4	20	19	21	19	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728087262	7	150966860	GGCGCTCGGTGAAC	G	290	PASS	SMARCD3	CCDS5924.1	r.?	-	-	Del	intronic	D	150966860	150966876	13	32	537.837	-	-	1	1	1	SMARCD3|CCDS5924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMARCD3|CCDS5924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	3	7	3	7	22	22	22	22	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728090767	8	2454264	AT	A	300	PASS	AC104021.1	ENST00000515276	r.?	-	-	Del	intronic	D	2454264	2454273	1	10	270.26	-	-	8	1	1	AC104021.1|ENST00000515276|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC104021.1|ENST00000515276|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	1	4	4	5	18	27	18	27	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728091955	8	5643878	GC	G	689	PASS	-	-	-	-	-	Del	-	D	5643878	5643880	1	49	646.216	-	-	1	1	1	-	-	./.	0	0	0	0	21	11	21	11	0	0	./.	6	6	9	6	30	24	30	24	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728093155	8	9508505	AAAGT	A	449	PASS	TNKS	CCDS5974.1	r.?	-	-	Del	intronic	D	9508505	9508510	4	24	430.61	-	-	1	1	1	TNKS|CCDS5974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNKS|CCDS5974.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	5	5	10	18	24	18	24	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728096911	8	20736775	AG	A	420	PASS	-	-	-	-	-	Del	-	D	20736775	20736777	1	20	378.364	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	3	4	5	4	19	33	19	33	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728101136	8	33910820	AAAT	A	269	PASS	-	-	-	-	-	Del	-	D	33910820	33910827	3	10	270.26	-	-	2	1	1	-	-	./.	0	0	0	0	25	12	25	12	0	0	./.	4	1	7	2	42	24	42	24	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728101153	8	34031324	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	34031324	34031344	2	15	320.097	-	-	9	1	-	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	4	2	5	3	32	25	32	25	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728101521	8	35521160	ATGG	A	420	PASS	UNC5D	CCDS6093.2	r.?	-	-	Del	intronic	D	35521160	35521166	3	20	378.364	-	-	1	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	3	4	4	5	32	32	32	32	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728101927	8	37361095	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	37361095	37361112	2	10	270.26	-	-	8	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	1	4	1	26	38	26	38	4	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728102017	8	37740519	CCAAA	C	449	PASS	RAB11FIP1	CCDS34882.1	r.?	-	-	Del	intronic	D	37740519	37740526	4	25	430.008	-	-	1	1	1	RAB11FIP1|CCDS34882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB11FIP1|CCDS34882.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	4	6	4	29	28	29	28	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728103467	8	42067368	C	CA	660	PASS	PLAT	CCDS6126.1	r.?	-	-	Ins	upstream	I	42067368	42067375	1	42	587.347	-	-	6	1	1	PLAT|CCDS6126.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PLAT|CCDS6126.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	10	13	10	0	0	./.	5	6	8	9	37	36	37	36	8	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728105710	8	53259543	CTG	C	420	PASS	ST18	CCDS6149.1	r.?	-	-	Del	intronic	D	53259543	53259548	2	18	378.364	-	-	2	1	1	ST18|CCDS6149.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ST18|CCDS6149.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	2	8	3	22	26	22	26	8	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728105976	8	54107169	CAGTTA	C	387	PASS	-	-	-	-	-	Del	-	D	54107169	54107178	5	21	431.814	-	-	1	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	6	2	7	20	28	20	28	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728106572	8	55766392	G	GAGAGAGAGAAAGAAAGAGAAAGGAAGGAAGAGAAAC	480	PASS	-	-	-	-	-	Ins	-	I	55766392	55766400	36	25	259.023	-	-	0	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	4	4	0	0	35	26	36	28	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728107647	8	59805862	GATA	G	360	PASS	TOX	CCDS34897.1	r.?	-	-	Del	intronic	D	59805862	59805869	3	16	324.312	-	-	2	1	1	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TOX|CCDS34897.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	18	9	18	0	0	./.	3	3	5	4	31	36	31	36	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728107727	8	60143786	TAAA	T	300	PASS	-	-	-	-	-	Del	-	D	60143786	60143793	3	12	270.26	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	3	5	29	34	29	34	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728109027	8	64492104	AT	A	540	PASS	-	-	-	-	-	Del	-	D	64492104	64492114	1	30	486.468	-	-	9	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	5	6	5	23	45	23	45	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728111113	8	72178244	AC	A	660	PASS	EYA1	CCDS34906.1	r.?	-	-	Del	intronic	D	72178244	72178246	1	42	594.572	-	-	1	1	1	EYA1|CCDS34906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYA1|CCDS34906.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	6	5	9	7	28	31	28	31	9	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728111297	8	72933886	GTGGAGGTAACCAAGC	G	261	PASS	TRPA1	CCDS34908.1	r.4775_4789delGCUUGGUUACCUCCA	c.?	p.?	Del	3'UTR variant	D	72933886	72933904	15	30	486.468	-	-	1	1	1	TRPA1|CCDS34908.1|r.4775_4789delGCUUGGUUACCUCCA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TRPA1|CCDS34908.1|r.4775_4789delGCUUGGUUACCUCCA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	13	18	13	0	0	./.	4	5	4	5	24	18	24	18	4	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728114253	8	83577214	A	ATGTGATTAAT	261	PASS	-	-	-	-	-	Ins	-	I	83577214	83577227	10	30	429.272	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	4	4	4	30	40	31	41	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728114760	8	85315879	TA	T	343	PASS	-	-	-	-	-	Del	-	D	85315879	85315881	1	15	320.7	-	-	1	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	2	4	4	4	25	30	25	30	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728115410	8	87553203	AAAAATATAT	A	319	PASS	CPNE3	CCDS6243.1	r.?	-	-	Del	intronic	D	87553203	87553214	9	40	594.572	-	-	1	1	1	CPNE3|CCDS6243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE3|CCDS6243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	7	4	7	4	30	25	30	25	7	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728116737	8	92643477	AC	A	540	PASS	-	-	-	-	-	Del	-	D	92643477	92643479	1	24	486.468	-	-	1	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	2	7	2	7	25	33	25	33	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728117109	8	94155237	TA	T	420	PASS	-	-	-	-	-	Del	-	D	94155237	94155239	1	20	375.354	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	3	4	5	5	33	31	33	31	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728118647	8	98895023	CT	C	540	PASS	MATN2	ENST00000254898	r.?	-	-	Del	intronic	D	98895023	98895028	1	30	485.264	-	-	4	1	1	MATN2|ENST00000254898|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MATN2|ENST00000254898|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	4	6	5	33	44	33	44	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728118819	8	99367302	ACCTG	A	418	PASS	-	-	-	-	-	Del	-	D	99367302	99367309	4	21	432.416	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	6	2	8	4	34	22	34	22	8	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728119668	8	102357402	TGGCA	T	449	PASS	-	-	-	-	-	Del	-	D	102357402	102357408	4	25	432.416	-	-	1	1	1	-	-	./.	0	0	0	0	21	8	21	8	0	0	./.	4	4	4	6	41	21	41	21	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728120785	8	106062917	AG	A	600	PASS	-	-	-	-	-	Del	-	D	106062917	106062919	1	36	539.316	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	5	5	6	38	35	38	35	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728120968	8	106721046	C	CA	540	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Ins	intronic	I	106721046	106721052	1	30	481.049	-	-	5	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	4	5	5	5	39	29	39	30	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728121051	8	107086099	GA	G	480	PASS	-	-	-	-	-	Del	-	D	107086099	107086101	1	24	431.212	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	5	4	7	29	31	29	31	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728121558	8	108612470	C	CG	480	PASS	-	-	-	-	-	Ins	-	I	108612470	108612471	1	24	427.599	-	-	0	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	3	5	6	26	34	26	34	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728121959	8	110186156	GTGATC	G	478	PASS	-	-	-	-	-	Del	-	D	110186156	110186164	5	28	486.468	-	-	1	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	6	3	6	4	36	20	36	20	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728122076	8	110626093	TA	T	540	PASS	ENSG00000147642	CCDS47912.1	r.?	-	-	Del	intronic	D	110626093	110626096	1	30	486.468	-	-	2	1	1	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	5	4	5	4	29	27	29	27	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728122945	8	114030638	CTTACTATTCCCTGAAAAGTAGCTGATACACTACTGAGAATGAAATGAATTATTTACATAAGTAGTCTGAAGATAAAGTACACTAAGCTCACATAGTATTACAGAACATTGTAGAAGCTACATTTTCATTAGTACTCCATCTTCATAATAATCTTGTTCCAAAGAGTTTTTCAAGTTAATGCATCAAATATTATATCCTATGTATTGAAAATTATTTATGTTAACACAATTGGTAGATAAAACTCCTAACAAGGTTAATTAAACTAGCAGTAACAAACATGCTGCATATGGAGGTGAGT	C	348	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	114030638	114030939	298	45	639.593	-	-	1	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	10	24	10	0	0	./.	4	8	0	0	27	28	31	36	4	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728123292	8	115189233	C	CAA	298	PASS	-	-	-	-	-	Ins	-	I	115189233	115189237	2	15	317.087	-	-	3	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	2	4	2	7	24	27	24	27	2	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728123709	8	116750517	GTGTCACTGTGCTGTATA	G	319	PASS	TRPS1	ENST00000422939	r.?	-	-	Del	intronic	D	116750517	116750539	17	42	594.572	-	-	1	1	1	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	5	6	4	6	15	32	16	32	5	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728124419	8	119175290	ACCT	A	809	PASS	-	-	-	-	-	Del	-	D	119175290	119175297	3	63	751.911	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	8	9	8	46	34	46	34	9	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728124531	8	119491571	GA	G	420	PASS	SAMD12	CCDS47913.1	r.?	-	-	Del	intronic	D	119491571	119491577	1	20	378.364	-	-	5	1	1	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	4	3	7	8	33	27	33	27	7	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728127399	8	129303071	CTT	C	540	PASS	-	-	-	-	-	Del	-	D	129303071	129303080	2	30	486.468	-	-	8	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	5	6	9	31	47	31	47	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728127400	8	129303982	ATTT	A	718	PASS	-	-	-	-	-	Del	-	D	129303982	129303989	3	54	702.074	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	8	6	9	33	31	33	31	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728129300	8	136723181	GCTGGTCTCAAACTC	G	319	PASS	-	-	-	-	-	Del	-	D	136723181	136723200	14	42	593.368	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	6	6	6	24	17	24	17	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728130466	8	140203253	TACTTCCAACCACCAGAA	T	319	PASS	-	-	-	-	-	Del	-	D	140203253	140203276	17	42	594.572	-	-	1	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	6	5	6	5	29	30	29	30	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728132271	9	831994	GC	G	866	PASS	-	-	-	-	-	Del	-	D	831994	832000	1	70	805.83	-	-	5	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	9	6	11	9	25	18	25	18	11	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728133528	9	4883684	GTGCTCAGTAAA	G	609	PASS	-	-	-	-	-	Del	-	D	4883684	4883698	11	126	1135.15	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	8	13	8	13	31	32	32	32	9	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728133641	9	5494618	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	5494618	5494628	1	40	575.649	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	7	8	13	24	38	24	38	8	13	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728135019	9	9681082	AAGCATATGTTAGAGTCAAATAAATATTTCTAAAAAATGGAAATACTCAAAGCCAATT	A	435	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9681082	9681140	57	70	805.228	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	9	6	0	0	21	14	30	20	9	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728135262	9	10369008	TA	T	300	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	10369008	10369011	1	6	270.416	-	-	2	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	5	0	6	3	34	19	34	19	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728136137	9	12965274	CA	C	660	PASS	-	-	-	-	-	Del	-	D	12965274	12965277	1	42	579.262	-	-	2	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	6	5	7	6	19	24	19	24	7	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728136152	9	13023283	GA	G	300	PASS	-	-	-	-	-	Del	-	D	13023283	13023288	1	12	269.814	-	-	4	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	3	4	20	22	20	22	3	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728136300	9	13670996	TGCCTCA	T	348	PASS	-	-	-	-	-	Del	-	D	13670996	13671008	6	49	646.59	-	-	1	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	6	6	6	6	15	22	15	22	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728137370	9	16923040	AGGCTG	A	625	PASS	-	-	-	-	-	Del	-	D	16923040	16923049	5	56	700.674	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	6	7	8	7	31	30	31	30	8	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728137554	9	17425742	TA	T	540	PASS	CNTLN	CCDS43789.1	r.?	-	-	Del	intronic	D	17425742	17425750	1	28	486.147	-	-	7	1	1	CNTLN|CCDS43789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTLN|CCDS43789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	13	23	13	0	0	./.	6	3	8	6	25	21	25	21	8	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728139329	9	24981465	ATC	A	360	PASS	-	-	-	-	-	Del	-	D	24981465	24981469	2	15	324.499	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	2	4	3	16	28	16	28	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728140007	9	27519605	AAACAGGACACATACCAAACTGAT	A	261	PASS	MOBKL2B	CCDS6520.1	r.?	-	-	Del	intronic	D	27519605	27519632	23	28	486.749	-	-	1	1	1	MOBKL2B|CCDS6520.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MOBKL2B|CCDS6520.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	6	2	3	23	12	24	15	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728140280	9	28451054	GA	G	540	PASS	LINGO2	CCDS6524.1	r.?	-	-	Del	intronic	D	28451054	28451061	1	30	486.749	-	-	6	1	1	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LINGO2|CCDS6524.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	5	4	6	6	25	24	25	24	6	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728140645	9	29608729	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	29608729	29608734	1	10	266.202	-	-	4	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	1	4	2	6	18	18	19	18	2	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728141280	9	31482223	AG	A	540	PASS	-	-	-	-	-	Del	-	D	31482223	31482225	1	28	486.749	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	6	3	8	39	34	39	34	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728148752	9	73491831	CCT	C	480	PASS	TRPM3	CCDS43835.1	r.?	-	-	Del	intronic	D	73491831	73491839	2	24	432.064	-	-	3	1	1	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	3	5	5	33	22	33	22	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728148997	9	74221896	TC	T	480	PASS	-	-	-	-	-	Del	-	D	74221896	74221899	1	16	431.462	-	-	2	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	1	10	2	45	28	45	28	10	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728150696	9	79147367	AAAAAT	A	298	PASS	-	-	-	-	-	Del	-	D	79147367	79147378	5	16	324.499	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	6	5	29	24	29	24	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728150979	9	80022783	A	AT	480	PASS	VPS13A	CCDS6655.1	r.?	-	-	Ins	intronic	I	80022783	80022792	1	24	427.849	-	-	8	1	1	VPS13A|CCDS6655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13A|CCDS6655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	3	5	9	8	29	30	29	31	9	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728151485	9	81747650	AGCCCAATCTTGG	A	348	PASS	-	-	-	-	-	Del	-	D	81747650	81747665	12	33	646.59	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	2	10	2	10	31	52	31	52	2	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728153558	9	87989711	CATTGT	C	389	PASS	-	-	-	-	-	Del	-	D	87989711	87989720	5	18	377.98	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	5	3	5	25	20	25	20	3	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728153988	9	89412505	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	89412505	89412513	1	36	585.884	-	-	7	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	8	3	9	4	42	31	43	32	9	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728155209	9	93226810	TCAC	T	300	PASS	-	-	-	-	-	Del	-	D	93226810	93226814	3	12	269.814	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	3	2	3	3	34	24	34	24	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728155797	9	94890808	TGTTG	TCA	253	PASS	-	-	-	-	-	Complex	-	DI	94890809	94890812	4	14	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	6	1	0	0	30	28	31	28	6	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728157979	9	101258926	TTGTTTTACATTA	T	261	PASS	GABBR2	CCDS6736.1	r.?	-	-	Del	intronic	D	101258926	101258940	12	30	483.137	-	-	1	1	1	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GABBR2|CCDS6736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	5	4	5	5	32	26	32	26	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728158080	9	101505126	TG	T	480	PASS	ANKS6	CCDS43856.1	r.?	-	-	Del	intronic	D	101505126	101505134	1	24	431.462	-	-	7	1	1	ANKS6|CCDS43856.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS6|CCDS43856.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	3	5	3	6	19	20	19	20	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728158885	9	104484792	G	GAA	385	PASS	GRIN3A	CCDS6758.1	r.?	-	-	Ins	intronic	I	104484792	104484797	2	30	471.095	-	-	4	1	1	GRIN3A|CCDS6758.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRIN3A|CCDS6758.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	5	4	6	7	41	28	41	28	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728158942	9	104728166	GC	G	540	PASS	-	-	-	-	-	Del	-	D	104728166	104728168	1	30	482.534	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	4	5	5	27	30	27	30	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728158962	9	104774254	CT	C	360	PASS	-	-	-	-	-	Del	-	D	104774254	104774256	1	15	323.897	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	4	3	35	28	35	28	4	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728160951	9	110946297	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	110946297	110946307	1	12	267.406	-	-	9	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	3	3	43	38	43	38	3	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728161320	9	111966180	AC	A	360	PASS	EPB41L4B	CCDS43859.1	r.?	-	-	Del	intronic	D	111966180	111966182	1	15	323.897	-	-	1	1	1	EPB41L4B|CCDS43859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPB41L4B|CCDS43859.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	2	4	4	4	25	41	25	41	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728161765	9	113259525	CT	C	540	PASS	SVEP1	CCDS48004.1	r.?	-	-	Del	intronic	D	113259525	113259530	1	30	481.33	-	-	4	1	1	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SVEP1|CCDS48004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	4	5	6	7	38	41	38	41	6	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728162933	9	115568471	CAAAAATGTCTCCAGACATTGCCAAATGTTCCCTGGGGGACAGGATTGCCACCCCACCCCCGACCAGTTGAAAGCCACATATTTAGAGGAAGAATGACAATATTGACATTATTAGGGAGAGAATTCACATTATCACTTTGTATCTTGGGAT	C	261	PASS	SNX30	CCDS43865.1	r.?	-	-	Del	intronic	D	115568471	115568627	150	28	486.749	-	-	1	1	1	SNX30|CCDS43865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX30|CCDS43865.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	6	0	0	28	30	31	36	3	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728164404	9	119640467	AC	A	480	PASS	ASTN2	CCDS48009.1	r.?	-	-	Del	intronic	D	119640467	119640473	1	24	432.666	-	-	5	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	5	3	6	3	27	36	27	36	6	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728165391	9	122619889	CT	C	600	PASS	-	-	-	-	-	Del	-	D	122619889	122619894	1	32	540.832	-	-	4	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	7	4	7	33	36	33	36	4	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728168886	9	133071186	GA	G	300	PASS	ENSG00000230938	ENST00000415566	r.?	-	-	Del	intronic	D	133071186	133071191	1	10	269.814	-	-	4	1	1	ENSG00000230938|ENST00000415566|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000230938|ENST00000415566|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	1	4	1	4	17	23	17	23	1	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728171288	X	2780528	GC	G	360	PASS	GYG2	CCDS14121.1	r.?	-	-	Del	intronic	D	2780528	2780534	1	16	323.844	-	-	5	1	1	GYG2|CCDS14121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GYG2|CCDS14121.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	3	5	3	21	28	21	28	5	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728172788	X	7276915	GA	G	420	PASS	STS	CCDS14127.1	r.?	-	-	Del	downstream	D	7276915	7276922	1	20	378.621	-	-	6	1	1	STS|CCDS14127.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	STS|CCDS14127.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	27	13	27	0	0	./.	3	4	8	5	35	30	35	30	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728173446	X	10368792	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	10368792	10368802	1	10	267.863	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	6	4	20	35	20	35	6	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728173463	X	10506499	GTCCACACATGGCCGTCAACGTAA	G	348	PASS	MID1	CCDS14138.1	r.?	-	-	Del	intronic	D	10506499	10506525	23	40	650.096	-	-	1	1	1	MID1|CCDS14138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MID1|CCDS14138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	9	3	8	2	28	25	29	26	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728174404	X	14180718	CATT	C	720	PASS	-	-	-	-	-	Del	-	D	14180718	14180724	3	45	650.096	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	4	8	5	10	32	35	32	35	5	10	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728174806	X	16133591	CA	C	300	PASS	-	-	-	-	-	Del	-	D	16133591	16133597	1	12	270.873	-	-	5	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	4	6	38	25	38	25	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728174807	X	16134075	CT	C	480	PASS	-	-	-	-	-	Del	-	D	16134075	16134081	1	25	431.591	-	-	5	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	4	5	5	39	20	39	20	5	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728177263	X	26964241	CTCCA	C	447	PASS	-	-	-	-	-	Del	-	D	26964241	26964251	4	24	487.572	-	-	2	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	7	2	7	2	32	23	32	23	7	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728177309	X	27135017	TAACAATACTGGTTAAA	T	261	PASS	-	-	-	-	-	Del	-	D	27135017	27135034	16	18	487.572	-	-	1	1	1	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	1	8	1	7	8	30	8	31	1	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728177627	X	28443549	TGCTTGGTTGTGTCTATTGTA	T	261	PASS	-	-	-	-	-	Del	-	D	28443549	28443573	20	24	484.562	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	7	3	6	24	22	24	23	3	7	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728177946	X	29649156	TC	T	360	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	29649156	29649159	1	15	325.048	-	-	2	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	2	6	9	24	24	24	24	6	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728178218	X	30910903	AGTCCT	A	658	PASS	TAB3	CCDS14226.1	r.?	-	-	Del	intronic	D	30910903	30910911	5	45	650.096	-	-	1	1	1	TAB3|CCDS14226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TAB3|CCDS14226.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	17	4	17	0	0	./.	4	8	4	9	24	25	24	25	4	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728179470	X	36315965	AC	A	296	PASS	CXorf30	ENST00000378653	r.?	-	-	Del	intronic	D	36315965	36315967	1	20	379.223	-	-	1	1	1	CXorf30|ENST00000378653|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CXorf30|ENST00000378653|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	4	3	5	4	28	13	28	13	5	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728182285	X	50175599	GA	G	300	PASS	-	-	-	-	-	Del	-	D	50175599	50175603	1	12	270.873	-	-	3	1	1	-	-	./.	0	0	0	0	10	22	10	22	0	0	./.	3	2	9	3	22	22	22	22	9	3	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728182514	X	51309564	CTCACAA	C	319	PASS	-	-	-	-	-	Del	-	D	51309564	51309574	6	40	589.901	-	-	1	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	7	4	8	5	23	27	23	27	8	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728183780	X	62631542	TTTCTTAAAGCACCAACCTGCTC	T	290	PASS	-	-	-	-	-	Del	-	D	62631542	62631567	22	35	541.747	-	-	1	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	4	6	4	5	21	19	21	20	4	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728183796	X	62825855	AG	A	360	PASS	-	-	-	-	-	Del	-	D	62825855	62825857	1	15	325.048	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	4	2	4	22	22	22	22	2	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728188540	X	86710475	TGGACCTCTGAATAGA	T	290	PASS	-	-	-	-	-	Del	-	D	86710475	86710491	15	27	535.726	-	-	1	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	2	8	2	8	20	29	20	29	2	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728188883	X	88379867	TGA	T	600	PASS	-	-	-	-	-	Del	-	D	88379867	88379871	2	27	541.747	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	2	8	3	8	22	28	22	28	3	8	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728189462	X	91101460	C	CA	269	PASS	PCDH11X	CCDS14461.1	r.?	-	-	Ins	intronic	I	91101460	91101468	1	12	267.863	-	-	7	1	1	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	6	2	23	20	23	20	6	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728191585	X	100833299	TC	T	840	PASS	-	-	-	-	-	Del	-	D	100833299	100833301	1	63	756.639	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	6	8	10	9	34	30	34	30	10	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728192474	X	106019947	AT	A	420	PASS	RNF128	CCDS14521.1	r.?	-	-	Del	intronic	D	106019947	106019957	1	20	378.019	-	-	9	1	1	RNF128|CCDS14521.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF128|CCDS14521.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	4	4	20	32	20	32	4	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728192475	X	106020289	A	ATT	778	PASS	RNF128	CCDS14521.1	r.?	-	-	Ins	intronic	I	106020289	106020298	2	55	741.588	-	-	8	1	1	RNF128|CCDS14521.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF128|CCDS14521.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	10	4	13	4	32	29	32	29	13	4	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728192476	X	106020552	GGGAATAAAT	G	319	PASS	RNF128	CCDS14521.1	r.?	-	-	Del	intronic	D	106020552	106020565	9	42	595.922	-	-	1	1	1	RNF128|CCDS14521.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF128|CCDS14521.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	6	5	6	5	22	19	22	19	6	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728193243	X	111314331	AC	A	600	PASS	TRPC5	CCDS14561.1	r.?	-	-	Del	intronic	D	111314331	111314338	1	20	539.941	-	-	6	1	1	TRPC5|CCDS14561.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPC5|CCDS14561.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	1	9	1	11	3	24	3	24	1	11	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728193726	X	113571534	GT	G	360	PASS	-	-	-	-	-	Del	-	D	113571534	113571538	1	12	325.048	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	1	6	1	27	16	27	16	6	1	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728197033	X	127523253	TC	T	360	PASS	-	-	-	-	-	Del	-	D	127523253	127523255	1	12	324.446	-	-	1	1	1	-	-	./.	0	0	0	0	2	15	2	15	0	0	./.	1	5	1	5	10	28	10	28	1	5	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728197911	X	132003730	GATAAAATTCAACATGCCTTCATGCTAAAAACTCTCAATAAACTAGGTATTGATGGAATGTATCTCAAAATAACAAGAGCTATTTAGTACAAACCCACAGCCAATATCATAATGAATGGGCAAAAGCTGGAAGGATTCCCTCTGAAAACTGGCACAAGACAAGGATGCCCTCTCTCAACACTTCTATTCAACATAGTATTGGAAGTTCTGGCCAGGGAAATCAGGCAAGAGAAAGAAATAAAGGGTATTCAAATAGGAAGAGAGGAAGTCGAATTGTCTCTGTTTGCAGATGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTAATAAACAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGTAAAA	G	319	PASS	HS6ST2	CCDS48169.1	r.?	-	-	Del	intronic	D	132003730	132004127	394	30	595.922	-	-	1	1	1	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	16	23	16	0	0	./.	9	2	0	0	25	17	34	19	9	2	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728197912	X	132005286	TA	T	989	PASS	HS6ST2	CCDS48169.1	r.?	-	-	Del	intronic	D	132005286	132005291	1	88	920.97	-	-	4	1	1	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	10	7	12	9	39	22	39	22	12	9	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728201646	X	147014047	GAA	G	300	PASS	FMR1	CCDS14682.1	r.863_864delAA	c.735_736delAA	p.K246fs*8	Del	frameshift	D	147014047	147014052	2	10	270.873	-	-	4	1	1	FMR1|CCDS14682.1|r.863_864delAA|c.735_736delAA|p.K246fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FMR1|CCDS14682.1|r.863_864delAA|c.735_736delAA|p.K246fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	6	25	32	25	32	1	6	1	1	1	1	1	1	1	1
2662719	PD18237a	PD18237b	2728202643	X	152174430	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	152174430	152174445	2	12	270.873	-	-	7	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	2	3	26	23	26	23	2	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709727558	1	21215118	TAGGCA	T	358	PASS	EIF4G3	CCDS214.1	r.?	-	-	Del	intronic	D	21215118	21215126	5	18	375.608	-	-	1	1	1	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	2	6	6	24	24	24	24	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709731947	1	34389046	G	GATGCCA	522	PASS	CSMD2	CCDS380.1	r.?	-	-	Ins	intronic	I	34389046	34389059	6	100	898.418	-	-	2	1	1	CSMD2|CCDS380.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD2|CCDS380.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	9	9	10	9	24	29	24	29	10	9	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709738623	1	59302693	CTT	C	480	PASS	-	-	-	-	-	Del	-	D	59302693	59302698	2	24	428.664	-	-	4	1	1	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	5	3	7	4	22	16	22	16	7	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709748164	1	93962446	CAA	C	540	PASS	FNBP1L	ENST00000370253	r.?	-	-	Del	intronic	D	93962446	93962449	2	28	482.323	-	-	2	1	1	FNBP1L|ENST00000370253|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNBP1L|ENST00000370253|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	3	8	3	17	18	17	18	8	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709754937	1	118528344	T	TA	300	PASS	SPAG17	CCDS899.1	r.?	-	-	Ins	intronic	I	118528344	118528351	1	12	265.281	-	-	6	1	1	SPAG17|CCDS899.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPAG17|CCDS899.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	6	4	6	0	0	./.	2	3	2	6	24	23	24	24	2	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709756510	1	142804299	AT	A	290	PASS	-	-	-	-	-	Del	-	D	142804299	142804307	1	11	535.981	-	-	7	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	10	0	12	0	194	192	194	192	12	0	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709758586	1	146657186	T	TA	780	PASS	FMO5	CCDS926.1	r.?	-	-	Ins	downstream	I	146657186	146657188	1	54	689.731	-	-	1	1	1	FMO5|CCDS926.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	FMO5|CCDS44209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	8	5	9	5	34	41	34	41	9	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709766363	1	168090244	G	GA	360	PASS	GPR161	CCDS1268.1	r.?	-	-	Ins	intronic	I	168090244	168090253	1	16	318.337	-	-	8	1	1	GPR161|CCDS1268.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GPR161|CCDS1268.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	3	3	5	6	37	37	38	37	5	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709770124	1	180383161	GTACATTTTTC	G	377	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180383161	180383174	10	56	697.558	-	-	1	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	6	7	6	8	26	33	26	33	6	8	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709773199	1	190077934	G	GA	720	PASS	FAM5C	CCDS1373.1	r.?	-	-	Ins	intronic	I	190077934	190077943	1	48	629.45	-	-	8	1	1	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	7	5	8	6	38	25	38	26	8	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709775377	1	197667183	TC	T	360	PASS	DENND1B	CCDS44289.1	r.?	-	-	Del	intronic	D	197667183	197667185	1	16	321.95	-	-	1	1	1	DENND1B|CCDS44289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DENND1B|CCDS44289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	3	3	4	6	22	29	22	29	4	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709778558	1	206765481	AC	A	360	PASS	RASSF5	CCDS1464.1	r.?	-	-	Del	downstream	D	206765481	206765483	1	15	321.95	-	-	1	1	1	RASSF5|CCDS1464.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LGTN|CCDS1465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	23	28	23	0	0	./.	2	4	3	5	28	33	28	33	3	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709782477	1	219410859	CATCTCAGAGCAGTAA	C	406	PASS	-	-	-	-	-	Del	-	D	219410859	219410875	15	60	748.206	-	-	1	1	1	-	-	./.	0	0	0	0	35	32	35	32	0	0	./.	5	9	6	9	25	20	26	20	7	9	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709784094	1	224456408	TG	T	1200	PASS	NVL	CCDS1541.1	r.?	-	-	Del	intronic	D	224456408	224456411	1	57	1073.17	-	-	2	1	1	NVL|CCDS1541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NVL|CCDS1541.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	18	2	24	3	41	20	41	20	24	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709784161	1	224577221	AG	A	480	PASS	WDR26	CCDS31037.1	r.2207delC	c.?	p.?	Del	3'UTR variant	D	224577221	224577223	1	24	429.266	-	-	1	1	1	WDR26|CCDS31037.1|r.2207delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	WDR26|CCDS31037.1|r.2207delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	8	8	8	0	0	./.	5	3	6	4	27	31	27	31	6	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709786280	1	230709847	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	230709847	230709851	1	12	263.475	-	-	3	1	1	-	-	./.	0	0	0	0	7	3	7	3	0	0	./.	2	3	2	3	25	27	25	27	2	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709809199	10	48310561	TC	T	360	PASS	-	-	-	-	-	Del	-	D	48310561	48310564	1	16	322.738	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	3	6	3	25	21	25	21	6	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709826291	10	107747948	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	107747948	107747951	1	12	266.44	-	-	2	1	1	-	-	./.	0	0	0	0	13	1	13	1	0	0	./.	3	2	4	3	32	23	33	23	4	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709835348	11	2165703	GT	G	358	PASS	IGF2	CCDS7728.1	r.?	-	-	Del	intronic	D	2165703	2165707	1	20	374.182	-	-	3	1	1	IGF2|CCDS7728.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IGF2|CCDS7728.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	48	29	48	0	0	./.	4	3	5	7	15	26	15	26	5	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709844852	11	32756259	C	CA	288	PASS	CCDC73	CCDS41630.1	r.?	-	-	Ins	intronic	I	32756259	32756267	1	35	533.685	-	-	7	1	1	CCDC73|CCDS41630.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC73|CCDS41630.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	5	28	6	0	0	./.	6	4	9	4	33	30	33	31	9	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709850933	11	57281396	T	TC	420	PASS	SLC43A1	CCDS7958.1	r.?	-	-	Ins	intronic	I	57281396	57281403	1	20	362.14	-	-	6	1	1	SLC43A1|CCDS7958.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC43A1|CCDS7958.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	20	31	21	0	0	./.	3	4	5	4	23	22	23	22	5	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709869877	11	122871345	G	GT	298	PASS	-	-	-	-	-	Ins	-	I	122871345	122871347	1	15	320.211	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	2	5	3	22	12	22	12	5	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709882735	12	28415864	CCTCT	C	838	PASS	CCDC91	CCDS8716.1	r.?	-	-	Del	intronic	D	28415864	28415871	4	60	808.183	-	-	3	1	1	CCDC91|CCDS8716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC91|CCDS8716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	11	4	11	5	25	18	25	18	11	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709885780	12	40424321	GTTTCA	G	716	PASS	SLC2A13	CCDS8736.2	r.?	-	-	Del	intronic	D	40424321	40424330	5	63	755.428	-	-	1	1	1	SLC2A13|CCDS8736.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC2A13|CCDS8736.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	8	6	9	6	28	20	28	20	9	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709911097	12	127986438	TG	T	360	PASS	-	-	-	-	-	Del	-	D	127986438	127986443	1	15	323.755	-	-	4	1	1	-	-	./.	0	0	0	0	4	8	4	8	0	0	./.	2	4	4	4	16	10	16	10	4	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709911656	12	129315301	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	129315301	129315318	2	12	269.796	-	-	8	1	1	-	-	./.	0	0	0	0	27	13	27	13	0	0	./.	3	2	3	2	36	31	36	31	3	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709913120	12	133240338	G	GT	420	PASS	POLE	CCDS9278.1	r.?	-	-	Ins	intronic	I	133240338	133240340	1	20	373.5	-	-	1	1	1	POLE|CCDS9278.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POLE|CCDS9278.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	42	46	42	47	0	0	./.	4	3	4	5	21	32	21	32	4	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709917137	13	27887629	ATT	A	720	PASS	-	-	-	-	-	Del	-	D	27887629	27887635	2	40	649.585	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	9	4	12	23	27	23	27	4	12	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709917244	13	28119594	AG	A	300	PASS	LNX2	CCDS9323.1	r.?	-	-	Del	downstream	D	28119594	28119597	1	10	270.058	-	-	2	1	1	LNX2|CCDS9323.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	LNX2|CCDS9323.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	4	9	4	9	0	0	./.	4	1	5	2	24	20	24	20	5	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709917567	13	28872083	GTC	G	540	PASS	FLT1	CCDS9330.1	r.?	-	-	Del	downstream	D	28872083	28872087	2	30	486.587	-	-	1	1	1	FLT1|CCDS9330.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FLT1|CCDS9330.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	5	7	5	0	0	./.	4	5	4	5	19	21	19	21	4	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709948499	14	35565506	GC	G	538	PASS	PPP2R3C	CCDS9654.1	r.?	-	-	Del	intronic	D	35565506	35565509	1	36	537.762	-	-	2	1	1	PPP2R3C|CCDS9654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP2R3C|CCDS9654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	5	6	6	25	20	25	20	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709960573	14	75059234	C	CA	269	PASS	LTBP2	CCDS9831.1	r.?	-	-	Ins	intronic	I	75059234	75059243	1	12	267.677	-	-	8	1	1	LTBP2|CCDS9831.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LTBP2|CCDS9831.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	2	3	4	6	20	31	20	31	4	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709975107	15	33592435	TCA	T	420	PASS	-	-	-	-	-	Del	-	D	33592435	33592438	2	18	379.107	-	-	1	1	1	-	-	./.	0	0	0	0	31	37	31	37	0	0	./.	5	2	6	6	16	20	16	20	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709975477	15	34341310	C	CA	300	PASS	CHRM5	CCDS10031.1	r.?	-	-	Ins	intronic	I	34341310	34341316	1	12	267.781	-	-	5	1	1	CHRM5|CCDS10031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CHRM5|CCDS10031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	2	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709993661	15	94720877	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	94720877	94720897	2	10	264.168	-	-	9	1	-	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	1	4	1	26	24	26	24	4	1	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2709995047	15	99386741	GTAGT	G	449	PASS	IGF1R	CCDS10378.1	r.?	-	-	Del	intronic	D	99386741	99386751	4	25	433.266	-	-	2	1	1	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	3	7	3	0	0	./.	4	4	5	5	17	36	17	36	5	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710025161	17	8422683	AG	A	360	PASS	MYH10	CCDS11144.1	r.?	-	-	Del	intronic	D	8422683	8422686	1	12	323.016	-	-	2	1	1	MYH10|CCDS11144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYH10|CCDS11144.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	5	5	23	28	23	28	5	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710058294	18	27626969	A	ACAT	509	PASS	-	-	-	-	-	Ins	-	I	27626969	27626970	3	30	469.812	-	-	0	1	1	-	-	./.	0	0	0	0	3	7	3	7	0	0	./.	4	5	0	0	19	19	20	19	4	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710071472	18	74660200	TC	T	300	PASS	ZNF236	CCDS42447.1	r.?	-	-	Del	intronic	D	74660200	74660202	1	10	271.041	-	-	1	1	1	ZNF236|CCDS42447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF236|CCDS42447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	19	24	19	0	0	./.	4	1	9	1	31	16	31	16	9	1	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710096980	2	5594553	CGTT	C	569	PASS	-	-	-	-	-	Del	-	D	5594553	5594559	3	36	537.287	-	-	1	1	1	-	-	./.	0	0	0	0	18	26	18	26	0	0	./.	5	5	6	6	31	21	31	21	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710097271	2	6621780	TATAGAGTCAA	T	261	PASS	-	-	-	-	-	Del	-	D	6621780	6621792	10	10	482.354	-	-	1	1	1	-	-	./.	0	0	0	0	43	35	43	35	0	0	./.	0	9	0	9	21	29	21	29	0	9	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710110716	2	53635426	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	53635426	53635432	1	20	371.887	-	-	5	1	1	-	-	./.	0	0	0	0	7	7	7	9	0	0	./.	3	4	5	5	21	22	21	23	5	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710132615	2	133101616	C	CTT	443	PASS	-	-	-	-	-	Ins	-	I	133101616	133101617	2	40	574.76	-	-	0	1	1	-	-	./.	0	0	0	0	5	7	5	8	0	0	./.	4	7	0	0	27	32	28	34	4	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710133455	2	136399785	A	AG	300	PASS	R3HDM1	CCDS2177.1	r.?	-	-	Ins	intronic	I	136399785	136399792	1	10	265.031	-	-	6	1	1	R3HDM1|CCDS2177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	R3HDM1|CCDS2177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	4	1	5	1	29	14	29	14	5	1	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710135425	2	142963385	TGGC	TA	449	PASS	-	-	-	-	-	Complex	-	DI	142963386	142963388	3	25	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	4	0	0	17	31	17	31	4	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710144891	2	178929571	C	CT	300	PASS	PDE11A	CCDS42786.1	r.?	-	-	Ins	intronic	I	178929571	178929581	1	12	265.633	-	-	9	1	1	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	3	3	36	23	36	24	3	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710162553	2	240991030	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	240991030	240991038	1	25	425.013	-	-	7	1	1	-	-	./.	0	0	0	0	27	26	27	26	0	0	./.	4	4	5	6	26	29	26	29	5	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710172503	20	30339125	T	TA	600	PASS	TPX2	CCDS13190.1	r.?	-	-	Ins	intronic	I	30339125	30339127	1	36	532.414	-	-	1	1	1	TPX2|CCDS13190.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TPX2|CCDS13190.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	5	5	6	6	26	23	27	23	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710179594	20	53406490	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	53406490	53406499	1	21	428.099	-	-	8	1	1	-	-	./.	0	0	0	0	24	20	24	21	0	0	./.	6	2	9	2	27	29	27	29	9	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710181052	20	58578025	T	TA	300	PASS	CDH26	CCDS13485.1	r.?	-	-	Ins	intronic	I	58578025	58578035	1	12	267.11	-	-	9	1	1	CDH26|CCDS13485.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH26|CCDS13485.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	3	2	3	22	32	22	33	2	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710183850	21	10138572	GT	G	407	PASS	-	-	-	-	-	Del	-	D	10138572	10138575	1	42	597.842	-	-	2	1	1	-	-	./.	0	0	0	0	22	7	22	7	0	0	./.	5	6	12	8	208	111	208	111	12	8	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710184187	21	10618773	T	TGGTGTATATACACACATATGCATATA	355	PASS	-	-	-	-	-	Ins	-	I	10618773	10618774	26	16	231.572	-	-	0	1	-	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	3	0	0	59	47	60	49	3	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710184646	21	10828742	A	AGAATGGACTGGAATGGAATGGAATGCAACCGAAAG	319	PASS	-	-	-	-	-	Ins	-	I	10828742	10828765	35	42	366.049	-	-	0	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	6	0	0	27	43	29	44	5	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710184962	21	11056767	AT	A	954	PASS	-	-	-	-	-	Del	-	D	11056767	11056769	1	108	1032.64	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	8	11	0	0	199	179	199	179	8	11	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710188990	21	23980929	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	23980929	23980936	1	14	376.23	-	-	6	1	1	-	-	./.	0	0	0	0	2	11	2	11	0	0	./.	6	1	6	2	30	25	30	25	6	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710206535	22	42860157	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	42860157	42860167	1	10	269.018	-	-	9	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	4	1	6	1	25	27	25	27	6	1	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710210184	3	1682518	CG	C	660	PASS	-	-	-	-	-	Del	-	D	1682518	1682520	1	42	592.269	-	-	1	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	6	5	6	6	31	28	31	28	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710219243	3	33712275	GT	G	360	PASS	CLASP2	ENST00000307312	r.?	-	-	Del	intronic	D	33712275	33712277	1	15	323.056	-	-	1	1	1	CLASP2|ENST00000307312|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CLASP2|ENST00000307312|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	2	4	2	6	23	22	23	22	2	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710221245	3	41961098	T	TA	360	PASS	ULK4	CCDS43071.1	r.?	-	-	Ins	intronic	I	41961098	41961108	1	15	315.831	-	-	9	1	1	ULK4|CCDS43071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ULK4|CCDS43071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	2	4	3	6	22	36	22	36	3	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710236195	3	96424738	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	96424738	96424748	1	12	261.989	-	-	9	1	1	-	-	./.	0	0	0	0	8	4	8	5	0	0	./.	2	3	2	3	25	19	25	19	2	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710240707	3	112012143	ATC	A	449	PASS	SLC9A10	CCDS33817.1	r.?	-	-	Del	intronic	D	112012143	112012150	2	21	425.925	-	-	3	1	-	SLC9A10|CCDS33817.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC9A10|CCDS33817.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	2	6	4	6	23	26	23	26	4	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710240980	3	112932157	C	CAGCACACA	261	PASS	BOC	CCDS2971.1	r.?	-	-	Ins	intronic	I	112932157	112932166	8	30	438.225	-	-	1	1	1	BOC|CCDS2971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BOC|CCDS2971.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	4	5	6	5	23	22	23	22	6	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710245121	3	127992820	TG	T	360	PASS	EEFSEC	CCDS33849.1	r.?	-	-	Del	intronic	D	127992820	127992825	1	15	322.454	-	-	4	1	1	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	18	26	18	0	0	./.	4	2	7	5	29	23	29	23	7	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710249765	3	145202279	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	145202279	145202289	1	28	479.165	-	-	9	1	1	-	-	./.	0	0	0	0	21	24	21	25	0	0	./.	6	3	7	4	36	30	36	30	7	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710260777	3	185985706	CGT	C	300	PASS	DGKG	CCDS3274.1	r.?	-	-	Del	intronic	D	185985706	185985722	2	12	266.805	-	-	7	1	-	DGKG|CCDS3274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKG|CCDS3274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	21	21	21	0	0	./.	3	2	3	2	21	25	21	25	3	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710261159	3	187239137	TGAA	T	389	PASS	-	-	-	-	-	Del	-	D	187239137	187239142	3	20	376.899	-	-	1	1	1	-	-	./.	0	0	0	0	19	36	19	36	0	0	./.	3	4	5	4	17	26	17	26	5	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710296176	4	113778846	CAG	C	420	PASS	ANK2	ENST00000506722	r.?	-	-	Del	intronic	D	113778846	113778851	2	20	376.878	-	-	2	1	1	ANK2|ENST00000506722|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANK2|ENST00000506722|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	4	3	4	5	29	23	29	23	4	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710322195	5	4889613	TCATGTCATCTGCAAA	T	414	PASS	ENSG00000224867	ENST00000416839	r.?	-	-	Del	intronic	D	4889613	4889631	15	80	862.331	-	-	1	1	1	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224867|ENST00000416839|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	3	9	3	0	0	./.	9	7	10	4	20	17	20	20	10	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710323324	5	8427251	AC	A	509	PASS	-	-	-	-	-	Del	-	D	8427251	8427253	1	30	485.061	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	5	4	7	6	33	27	33	27	7	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710324294	5	11696406	CT	C	480	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11696406	11696411	1	16	431.166	-	-	4	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	1	7	3	9	18	24	18	24	3	9	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710328667	5	25857321	G	GAGCAGACC	261	PASS	-	-	-	-	-	Ins	-	I	25857321	25857355	8	28	441.111	-	-	4	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	3	6	3	6	26	27	27	27	4	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710329379	5	27942454	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	27942454	27942456	1	12	266.468	-	-	1	1	1	-	-	./.	0	0	0	0	11	22	11	23	0	0	./.	3	2	5	3	21	23	21	24	5	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710330952	5	32313196	TC	T	480	PASS	MTMR12	CCDS34138.1	r.?	-	-	Del	upstream	D	32313196	32313198	1	21	428.155	-	-	1	1	1	MTMR12|CCDS34138.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MTMR12|CCDS34138.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	46	55	46	55	0	0	./.	6	2	9	5	23	29	23	29	9	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710337500	5	58497345	A	AT	360	PASS	PDE4D	CCDS47213.1	r.?	-	-	Ins	intronic	I	58497345	58497353	1	16	319.762	-	-	7	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	19	21	19	0	0	./.	3	3	3	3	32	31	32	31	3	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710344551	5	85385634	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	85385634	85385643	1	10	266.468	-	-	8	1	1	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	1	4	1	7	28	31	28	31	1	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710348218	5	101666077	AATC	A	272	PASS	-	-	-	-	-	Del	-	D	101666077	101666086	3	24	643.738	-	-	2	1	1	-	-	./.	0	0	0	0	0	24	0	24	0	0	./.	11	1	12	2	20	22	20	22	12	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710351418	5	114471095	T	TA	300	PASS	TRIM36	CCDS4115.1	r.?	-	-	Ins	intronic	I	114471095	114471105	1	10	265.866	-	-	9	1	1	TRIM36|CCDS4115.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIM36|CCDS4115.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	1	4	6	6	27	34	27	34	6	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710360899	5	152717751	CTTTAT	C	290	PASS	-	-	-	-	-	Del	-	D	152717751	152717763	5	36	537.753	-	-	2	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	5	6	5	28	32	28	32	6	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710361824	5	156321888	CA	C	540	PASS	-	-	-	-	-	Del	-	D	156321888	156321890	1	30	485.061	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	4	5	8	5	33	22	33	22	8	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710364458	5	165470688	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	165470688	165470696	1	12	266.468	-	-	7	1	1	-	-	./.	0	0	0	0	20	25	20	26	0	0	./.	2	3	5	3	29	24	29	25	5	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710389692	6	62572538	A	ATATGC	360	PASS	KHDRBS2	CCDS4963.1	r.?	-	-	Ins	intronic	I	62572538	62572545	5	15	304.641	-	-	1	1	1	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	0	11	0	11	0	0	./.	2	4	2	4	21	28	21	28	2	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710392249	6	71146319	G	GA	300	PASS	FAM135A	CCDS34481.1	r.?	-	-	Ins	intronic	I	71146319	71146329	1	10	266.41	-	-	9	1	1	FAM135A|CCDS34481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM135A|CCDS34481.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	1	4	2	20	28	20	29	4	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710414467	6	156265956	C	CA	660	PASS	MIR1202	ENST00000408529	r.?	-	-	Ins	upstream	I	156265956	156265963	1	42	586.103	-	-	6	1	1	MIR1202|ENST00000408529|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	MIR1202|ENST00000408529|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	./.	0	0	0	0	18	12	18	12	0	0	./.	5	6	5	7	26	29	27	29	5	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710423405	7	13160526	GT	G	417	PASS	-	-	-	-	-	Del	-	D	13160526	13160528	1	20	377.173	-	-	1	1	1	-	-	./.	0	0	0	0	9	2	9	2	0	0	./.	3	4	4	6	23	29	23	29	4	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710434119	7	49937826	CA	C	420	PASS	VWC2	CCDS5508.1	r.?	-	-	Del	intronic	D	49937826	49937830	1	14	377.173	-	-	3	1	1	VWC2|CCDS5508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VWC2|CCDS5508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	6	1	6	4	24	20	24	20	6	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710434305	7	50769209	GTCTA	G	269	PASS	GRB10	CCDS43583.1	r.?	-	-	Del	intronic	D	50769209	50769214	4	12	268.807	-	-	1	1	1	GRB10|CCDS43583.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GRB10|CCDS43583.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	15	24	15	0	0	./.	2	3	4	3	25	22	25	22	4	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710439459	7	65901042	AAG	A	600	PASS	AC008267.2	ENST00000418858	r.?	-	-	Del	intronic	D	65901042	65901047	2	35	538.818	-	-	2	1	1	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC008267.2|ENST00000418858|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	6	4	7	4	26	20	26	20	7	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710449071	7	98745338	CG	C	300	PASS	SMURF1	CCDS34690.1	r.?	-	-	Del	upstream	D	98745338	98745342	1	12	268.807	-	-	3	1	1	SMURF1|CCDS34690.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SMURF1|CCDS34690.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	6	19	25	19	25	3	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710455525	7	123206624	A	AT	420	PASS	ASB15	CCDS34742.1	r.?	-	-	Ins	upstream	I	123206624	123206630	1	20	372.958	-	-	5	1	1	ASB15|CCDS34742.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ASB15|CCDS34742.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	6	10	7	10	0	0	./.	4	3	4	7	25	26	25	26	4	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710496361	8	110983027	GA	G	420	PASS	KCNV1	CCDS6314.1	r.?	-	-	Del	intronic	D	110983027	110983035	1	20	377.295	-	-	7	1	1	KCNV1|CCDS6314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNV1|CCDS6314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	3	5	4	35	23	35	23	5	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710500928	8	128973189	TGG	T	300	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128973189	128973198	2	12	267.518	-	-	8	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	0	1	12	10	12	10	3	3	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710513399	9	28726985	A	AGAGT	778	PASS	-	-	-	-	-	Ins	-	I	28726985	28726993	4	60	721.316	-	-	1	1	1	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	9	5	10	6	26	21	26	21	10	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710513886	9	30227230	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	30227230	30227237	1	48	640.375	-	-	6	1	1	-	-	./.	0	0	0	0	32	47	32	48	0	0	./.	5	7	7	7	37	30	38	30	7	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710518071	9	66471652	CA	C	282	PASS	-	-	-	-	-	Del	-	D	66471652	66471654	1	33	646.395	-	-	1	1	1	-	-	./.	0	0	0	0	27	54	27	54	0	0	./.	2	10	2	12	126	183	126	183	2	12	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710527402	9	95598416	TAA	T	660	PASS	ENSG00000218940	ENST00000375504	r.?	-	-	Del	intronic	D	95598416	95598421	2	42	594.185	-	-	4	1	1	ENSG00000218940|ENST00000375504|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ENSG00000218940|ENST00000375504|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	38	28	38	28	0	0	./.	6	5	6	7	28	35	28	35	6	7	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710529185	9	102069088	C	CT	306	PASS	KRT8P11	ENST00000409686	r.?	-	-	Ins	downstream	I	102069088	102069096	1	12	319.886	-	-	7	1	1	KRT8P11|ENST00000409686|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	KRT8P11|ENST00000409686|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	27	41	27	41	0	0	./.	1	5	2	6	10	30	10	30	2	6	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710532437	9	114145677	CAA	C	480	PASS	KIAA0368	CCDS48006.1	r.?	-	-	Del	intronic	D	114145677	114145682	2	24	432.134	-	-	4	1	1	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0368|CCDS48006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	3	5	4	15	22	15	22	5	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710543560	X	13868267	TG	T	360	PASS	GPM6B	CCDS48084.1	r.?	-	-	Del	intronic	D	13868267	13868272	1	16	323.007	-	-	4	1	1	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	3	3	7	5	21	14	21	14	7	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710546537	X	27659487	GTAATT	G	478	PASS	-	-	-	-	-	Del	-	D	27659487	27659496	5	18	485.112	-	-	1	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	1	8	3	10	23	31	23	31	3	10	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710549132	X	41012242	TAATC	T	629	PASS	USP9X	CCDS43930.1	r.2439_2442delAAUC	c.1806_1809delAATC	p.Q605fs*7	Del	frameshift	D	41012242	41012253	4	42	594.386	-	-	2	1	1	USP9X|CCDS43930.1|r.2439_2442delAAUC|c.1806_1809delAATC|p.Q605fs*7|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	USP9X|CCDS43930.1|r.2439_2442delAAUC|c.1806_1809delAATC|p.Q605fs*7|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	6	17	6	0	0	./.	6	5	9	5	26	27	26	27	9	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710553573	X	68569271	AC	A	420	PASS	-	-	-	-	-	Del	-	D	68569271	68569274	1	20	378.246	-	-	2	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	4	3	4	5	25	23	25	23	4	5	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710556408	X	82841743	AC	A	269	PASS	-	-	-	-	-	Del	-	D	82841743	82841745	1	6	255.124	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	5	0	6	0	21	19	21	19	6	0	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710556448	X	83120271	T	TAC	360	PASS	CYLC1	CCDS35341.1	r.?	-	-	Ins	intronic	I	83120271	83120290	2	15	312.17	-	-	9	1	-	CYLC1|CCDS35341.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CYLC1|CCDS35341.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	5	2	35	24	36	24	5	2	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710565779	X	129060570	G	GA	780	PASS	UTP14A	CCDS14615.1	r.?	-	-	Ins	intronic	I	129060570	129060576	1	26	693.426	-	-	5	1	1	UTP14A|CCDS14615.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UTP14A|CCDS14615.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	12	1	14	4	43	29	43	29	14	4	1	1	1	1	1	1	1	1
2662609	PD18758a	PD18758b	2710566682	X	133763097	TC	T	360	PASS	PLAC1	CCDS14642.1	r.?	-	-	Del	intronic	D	133763097	133763100	1	15	324.211	-	-	2	1	1	PLAC1|CCDS14642.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLAC1|CCDS14642.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	2	4	4	7	25	24	25	24	4	7	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787379113	1	48599381	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	48599381	48599391	1	12	262.656	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	18	10	0	0	./.	3	2	3	2	22	28	22	29	3	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787388520	1	81810363	A	AAT	300	PASS	LPHN2	ENST00000370728	r.?	-	-	Ins	intronic	I	81810363	81810365	2	6	260.85	-	-	0	1	-	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	9	0	0	./.	5	0	1	0	31	20	31	20	6	0	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787394183	1	100269506	CACTT	C	629	PASS	-	-	-	-	-	Del	-	D	100269506	100269515	4	36	592.413	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	8	4	9	34	38	34	38	4	9	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787394516	1	101260545	AG	A	569	PASS	-	-	-	-	-	Del	-	D	101260545	101260548	1	35	533.741	-	-	2	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	6	4	7	4	22	18	22	18	7	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787395488	1	104672902	CT	C	300	PASS	-	-	-	-	-	Del	-	D	104672902	104672911	1	10	269.279	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	4	1	5	6	22	31	22	31	5	6	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787406899	1	157990006	TG	T	480	PASS	KIRREL	CCDS1172.2	r.?	-	-	Del	intronic	D	157990006	157990008	1	24	430.846	-	-	1	1	1	KIRREL|CCDS1172.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIRREL|CCDS1172.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	6	3	23	26	23	26	6	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787409584	1	166606863	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	166606863	166606866	1	32	530.73	-	-	2	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	7	4	9	24	30	24	30	4	9	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787434346	1	246413003	ATG	A	420	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246413003	246413011	2	20	376.99	-	-	3	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	4	4	4	32	18	32	18	4	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787435796	10	1057040	TCTTCCCCCCACCCCGAGACTCTGGTGGAGATGCTGGGCCCCTTCATTCTCCTGCATCCCTCCATCCTGACTGTGCCCCCTGCACCAC	T	292	PASS	GTPBP4	CCDS31132.1	r.?	-	-	Del	intronic	D	1057040	1057135	87	30	482.73	-	-	1	1	1	GTPBP4|CCDS31132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTPBP4|CCDS31132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	8	10	0	0	./.	5	4	0	0	19	19	24	24	5	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787437324	10	5347769	AG	A	540	PASS	-	-	-	-	-	Del	-	D	5347769	5347774	1	30	482.73	-	-	4	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	5	4	5	4	14	23	14	23	5	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787449094	10	42427414	GT	G	300	PASS	-	-	-	-	-	Del	-	D	42427414	42427418	1	10	270.19	-	-	3	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	4	1	4	1	26	15	26	15	4	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787464170	10	95981056	GGT	G	300	PASS	PLCE1	CCDS41552.1	r.?	-	-	Del	intronic	D	95981056	95981071	2	10	270.19	-	-	7	1	-	PLCE1|CCDS41552.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCE1|CCDS41552.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	1	4	1	4	17	16	17	16	1	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787477417	11	5017482	GCA	G	360	PASS	MMP26	CCDS7752.1	r.?	-	-	Del	downstream	D	5017482	5017499	2	15	324.955	-	-	8	1	1	MMP26|CCDS7752.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR51L1|CCDS31369.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	7	14	7	0	0	./.	4	2	4	3	24	27	24	27	4	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787485191	11	29199327	A	AG	869	PASS	-	-	-	-	-	Ins	-	I	29199327	29199328	1	70	788.908	-	-	0	1	1	-	-	./.	0	0	0	0	7	9	8	9	0	0	./.	6	9	10	9	21	17	22	17	10	9	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787489795	11	45046793	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	45046793	45046801	2	15	322.547	-	-	3	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	4	4	5	21	31	21	31	4	5	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787493655	11	60835851	ATC	A	360	PASS	-	-	-	-	-	Del	-	D	60835851	60835869	2	15	324.955	-	-	8	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	2	5	2	14	9	14	9	5	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787504044	11	99683875	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	99683875	99683882	1	6	267.786	-	-	6	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	5	0	5	1	19	13	20	13	5	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787517350	12	11884479	A	AT	360	PASS	ETV6	CCDS8643.1	r.?	-	-	Ins	intronic	I	11884479	11884488	1	16	320.712	-	-	8	1	1	ETV6|CCDS8643.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ETV6|CCDS8643.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	3	3	3	28	21	28	21	3	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787527520	12	48046202	CACAT	C	269	PASS	-	-	-	-	-	Del	-	D	48046202	48046207	4	12	270.772	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	2	3	14	16	14	16	2	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787550757	12	128802506	A	ATT	660	PASS	-	-	-	-	-	Ins	-	I	128802506	128802510	2	42	582.453	-	-	3	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	6	6	7	31	34	31	34	6	7	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787575211	13	92931223	A	AT	300	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	92931223	92931233	1	12	263.583	-	-	9	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	2	3	24	23	25	23	2	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787586666	14	34691861	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	34691861	34691871	1	12	264.407	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	2	3	2	3	34	20	34	20	2	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787626412	15	80645183	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	80645183	80645184	1	12	265.162	-	-	0	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	3	2	21	19	22	19	3	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787680893	17	70976648	T	TA	540	PASS	SLC39A11	CCDS11690.1	r.?	-	-	Ins	intronic	I	70976648	70976658	1	24	474.693	-	-	9	1	1	SLC39A11|CCDS11690.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC39A11|CCDS11690.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	2	7	3	8	16	44	16	44	3	8	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787685383	18	1458230	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	1458230	1458240	1	16	322.385	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	3	3	3	3	35	45	35	45	3	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787693532	18	31129563	CA	C	300	PASS	-	-	-	-	-	Del	-	D	31129563	31129565	1	12	271.664	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	5	19	25	19	25	2	5	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787720238	19	41431421	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	41431421	41431422	1	12	266.066	-	-	0	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	3	2	20	19	20	19	3	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787737889	2	40261297	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	40261297	40261313	2	12	268.901	-	-	7	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	2	3	2	3	22	34	22	34	2	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787768175	2	155125149	CAG	C	360	PASS	GALNT13	CCDS2199.1	r.?	-	-	Del	intronic	D	155125149	155125166	2	16	322.801	-	-	8	1	-	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	3	3	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787775150	2	180468748	T	TA	360	PASS	ZNF385B	CCDS33339.1	r.?	-	-	Ins	intronic	I	180468748	180468755	1	15	319.791	-	-	6	1	1	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	2	4	6	7	32	34	32	34	6	7	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787781718	2	203644492	CAAT	C	387	PASS	ICA1L	CCDS2354.1	r.?	-	-	Del	intronic	D	203644492	203644499	3	25	424.582	-	-	2	1	1	ICA1L|CCDS2354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ICA1L|CCDS2354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	4	6	4	28	22	28	22	6	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787786635	2	220154646	G	GCG	356	PASS	PTPRN	CCDS2440.1	r.3482_3483inscg	c.?	p.?	Ins	3'UTR variant	I	220154645	220154647	2	25	420.969	-	-	0	1	1	PTPRN|CCDS2440.1|r.3482_3483inscg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	PTPRN|CCDS2440.1|r.3482_3483inscg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	4	6	4	6	0	0	./.	4	4	0	0	19	19	19	19	4	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787810281	20	55607027	A	ATA	360	PASS	-	-	-	-	-	Ins	-	I	55607025	55607029	2	7	318.709	-	-	1	1	-	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	6	0	1	35	51	36	51	0	7	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787824609	21	39577118	ATCT	A	389	PASS	-	-	-	-	-	Del	-	D	39577118	39577125	3	20	381.309	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	4	5	5	29	17	29	17	5	5	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787841720	3	9863703	AG	A	300	PASS	TTLL3	CCDS43048.1	r.?	-	-	Del	intronic	D	9863703	9863705	1	6	262.775	-	-	1	1	1	TTLL3|CCDS43048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTLL3|CCDS43048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	5	0	7	0	13	14	13	14	7	0	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787851827	3	48990177	T	TC	300	PASS	ARIH2	CCDS2780.1	r.?	-	-	Ins	intronic	I	48990177	48990178	1	12	266.388	-	-	0	1	1	ARIH2|CCDS2780.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARIH2|CCDS2780.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	3	3	18	23	18	23	3	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787865830	3	100035313	T	TA	300	PASS	TBC1D23	CCDS2936.1	r.?	-	-	Ins	intronic	I	100035313	100035322	1	10	265.785	-	-	8	1	1	TBC1D23|CCDS2936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D23|CCDS2936.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	4	1	7	1	44	16	45	16	7	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787900326	4	25617502	TC	T	300	PASS	-	-	-	-	-	Del	-	D	25617502	25617507	1	6	269.195	-	-	4	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	5	0	6	1	24	19	24	19	6	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787922191	4	99187145	T	TATA	387	PASS	RAP1GDS1	CCDS43253.1	r.?	-	-	Ins	intronic	I	99187145	99187146	3	16	417.226	-	-	0	1	1	RAP1GDS1|CCDS43253.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAP1GDS1|CCDS43253.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	1	7	1	7	17	35	17	35	1	7	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787923971	4	105893119	CTATT	C	269	PASS	-	-	-	-	-	Del	-	D	105893119	105893128	4	12	269.797	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	3	4	3	31	17	31	17	4	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787930546	4	129279381	G	GATCC	389	PASS	-	-	-	-	-	Ins	-	I	129279381	129279383	4	14	360.858	-	-	0	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	6	1	6	1	30	14	30	15	6	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787963834	5	40312802	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	40312802	40312812	1	6	264.813	-	-	9	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	0	5	0	6	22	22	22	22	0	6	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787974623	5	83601981	A	AT	300	PASS	EDIL3	CCDS4062.1	r.?	-	-	Ins	intronic	I	83601981	83601989	1	12	266.017	-	-	7	1	1	EDIL3|CCDS4062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDIL3|CCDS4062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	3	7	3	0	0	./.	3	2	4	2	25	17	25	17	4	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787989660	5	140602738	G	GA	360	PASS	PCDHB14	CCDS4256.1	r.?	-	-	Ins	upstream	I	140602738	140602747	1	15	320.666	-	-	8	1	1	PCDHB14|CCDS4256.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PCDHB14|CCDS4256.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	18	20	18	20	0	0	./.	2	4	3	5	29	25	30	25	3	5	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787990099	5	142202961	G	GT	300	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Ins	intronic	I	142202961	142202971	1	10	266.619	-	-	9	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	5	1	26	25	26	25	5	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2787999037	5	174311308	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	174311308	174311324	2	12	269.028	-	-	7	1	-	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	2	3	2	4	18	29	18	29	2	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788023248	6	68405532	ACACT	A	300	PASS	-	-	-	-	-	Del	-	D	68405532	68405541	4	12	270.191	-	-	2	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	2	3	2	3	14	17	14	17	2	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788024194	6	71399185	AGC	A	360	PASS	SMAP1	CCDS43478.1	r.?	-	-	Del	intronic	D	71399185	71399188	2	15	324.23	-	-	1	1	1	SMAP1|CCDS43478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMAP1|CCDS43478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	4	2	30	20	30	20	4	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788028804	6	87971429	GA	G	540	PASS	ZNF292	CCDS47457.1	r.8124delA	c.8083delA	p.K2696fs*14	Del	frameshift	D	87971429	87971436	1	30	486.344	-	-	6	1	1	ZNF292|CCDS47457.1|r.8124delA|c.8083delA|p.K2696fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZNF292|CCDS47457.1|r.8124delA|c.8083delA|p.K2696fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	11	12	11	0	0	./.	5	4	8	5	26	28	26	28	8	5	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788030509	6	94330121	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	94330121	94330129	1	32	524.127	-	-	7	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	7	3	9	3	23	21	23	21	9	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788041532	6	135836606	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	135836606	135836624	2	12	270.191	-	-	8	1	-	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	3	28	14	28	14	3	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788090953	7	135097841	A	ATT	300	PASS	CNOT4	CCDS47719.1	r.?	-	-	Ins	intronic	I	135097841	135097843	2	12	263.716	-	-	1	1	1	CNOT4|CCDS47719.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNOT4|CCDS47719.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	3	2	4	3	23	19	23	19	4	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788097843	7	157333210	AT	A	300	PASS	PTPRN2	CCDS5947.1	r.3255delA	c.?	p.?	Del	3'UTR variant	D	157333210	157333216	1	10	270.339	-	-	5	1	1	PTPRN2|CCDS5947.1|r.3255delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PTPRN2|CCDS5947.1|r.3255delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	10	11	10	0	0	./.	4	1	4	2	25	22	25	22	4	2	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788108030	8	29814877	GAGAA	G	329	PASS	-	-	-	-	-	Del	-	D	29814877	29814889	4	15	324.657	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	4	3	14	28	14	28	4	3	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788115783	8	62752584	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	62752584	62752594	1	10	266.935	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	4	1	28	29	28	31	4	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788122262	8	88379609	GTGA	G	420	PASS	CNBD1	ENST00000319712	r.?	-	-	Del	intronic	D	88379609	88379616	3	20	378.767	-	-	2	1	1	CNBD1|ENST00000319712|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNBD1|ENST00000319712|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	4	4	4	20	19	20	19	4	4	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788134852	8	130853333	C	CT	420	PASS	FAM49B	CCDS6361.1	r.?	-	-	Ins	downstream	I	130853333	130853335	1	8	374.553	-	-	1	1	1	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	10	14	10	14	0	0	./.	7	0	8	1	33	26	33	26	8	1	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788140360	9	3747198	CT	C	300	PASS	-	-	-	-	-	Del	-	D	3747198	3747200	1	10	263.787	-	-	1	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	1	4	1	5	23	21	23	21	1	5	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788159872	9	89014206	CT	C	420	PASS	-	-	-	-	-	Del	-	D	89014206	89014213	1	18	379.417	-	-	6	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	2	5	2	7	19	30	19	30	2	7	1	1	1	1	1	1	1	1
2838227	PD18760a	PD18760b	2788195217	X	110381639	TA	T	300	PASS	PAK3	CCDS48153.1	r.?	-	-	Del	intronic	D	110381639	110381646	1	10	271.234	-	-	6	1	1	PAK3|CCDS48153.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAK3|CCDS48153.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	1	4	1	24	25	24	25	4	1	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788234223	1	99299021	GT	G	360	PASS	-	-	-	-	-	Del	-	D	99299021	99299028	1	15	323.179	-	-	6	1	1	-	-	./.	0	0	0	0	11	3	11	3	0	0	./.	2	4	3	5	19	27	19	27	3	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788236182	1	105580086	GAT	G	300	PASS	-	-	-	-	-	Del	-	D	105580086	105580103	2	10	269.315	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	1	4	16	25	16	25	1	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788238870	1	115176956	C	CT	300	PASS	DENND2C	CCDS875.1	r.?	-	-	Ins	intronic	I	115176956	115176965	1	12	266.305	-	-	8	1	1	DENND2C|CCDS875.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DENND2C|CCDS875.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	4	19	4	0	0	./.	3	2	3	3	36	16	36	16	3	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788239769	1	118987918	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	118987918	118987937	2	12	269.315	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	2	2	15	15	15	15	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788248252	1	162816744	T	TG	360	PASS	C1orf110	ENST00000367912	r.?	-	-	Ins	downstream	I	162816744	162816746	1	7	318.964	-	-	1	1	1	C1orf110|ENST00000367912|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C1orf110|ENST00000367912|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	17	11	17	0	0	./.	6	0	6	1	21	32	21	32	6	1	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788257206	1	191998749	AAGTC	A	329	PASS	-	-	-	-	-	Del	-	D	191998749	191998756	4	15	323.179	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	2	5	32	22	32	22	2	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788260995	1	203804976	C	CT	300	PASS	ZC3H11A	CCDS30978.1	r.?	-	-	Ins	intronic	I	203804976	203804984	1	12	266.305	-	-	7	1	1	ZC3H11A|CCDS30978.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZC3H11A|CCDS30978.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	3	4	26	19	26	19	3	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788274244	1	245893779	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	245893779	245893789	1	12	264.499	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	3	2	4	38	27	38	27	2	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788277368	10	5410500	AC	A	300	PASS	UCN3	CCDS7065.1	r.?	-	-	Del	intronic	D	5410500	5410502	1	12	269.733	-	-	1	1	1	UCN3|CCDS7065.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	UCN3|CCDS7065.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	2	3	15	17	15	17	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788295909	10	65020515	A	AAT	317	PASS	JMJD1C	CCDS41532.1	r.?	-	-	Ins	intronic	I	65020515	65020516	2	12	316.575	-	-	0	1	1	JMJD1C|CCDS41532.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JMJD1C|CCDS41532.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	9	0	0	./.	1	5	0	0	11	22	11	22	1	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788321677	11	16947911	CA	C	300	PASS	PLEKHA7	CCDS31434.1	r.?	-	-	Del	intronic	D	16947911	16947913	1	12	270.722	-	-	1	1	1	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	2	3	2	3	22	19	22	19	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788340595	11	83414968	G	GA	360	PASS	DLG2	CCDS41696.1	r.?	-	-	Ins	intronic	I	83414968	83414977	1	12	320.05	-	-	8	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	5	1	5	5	34	26	34	27	5	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788342180	11	89060568	TG	T	360	PASS	NOX4	CCDS8285.1	r.?	-	-	Del	intronic	D	89060568	89060571	1	12	324.866	-	-	2	1	1	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	5	1	7	4	22	25	22	25	7	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788348526	11	110375231	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	110375231	110375250	2	12	270.722	-	-	9	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	3	1	20	28	20	28	3	2	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788364790	12	28672451	TC	T	420	PASS	CCDC91	CCDS8716.1	r.?	-	-	Del	intronic	D	28672451	28672454	1	20	378.479	-	-	2	1	1	CCDC91|CCDS8716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC91|CCDS8716.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	4	3	4	4	21	31	21	31	4	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788369042	12	45425664	C	CT	420	PASS	DBX2	CCDS31781.1	r.?	-	-	Ins	intronic	I	45425664	45425674	1	18	365.836	-	-	9	1	1	DBX2|CCDS31781.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DBX2|CCDS31781.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	5	2	6	3	28	15	29	15	6	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788373621	12	62006820	GT	G	300	PASS	-	-	-	-	-	Del	-	D	62006820	62006830	1	12	270.772	-	-	9	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	3	19	28	19	28	4	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788383509	12	97283378	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	97283378	97283386	1	10	264.149	-	-	7	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	1	5	4	31	31	31	33	5	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788389962	12	120934337	T	TA	300	PASS	DYNLL1	CCDS9200.1	r.367_368insa	c.113_114insA	p.A39fs*9	Ins	frameshift	I	120934337	120934338	1	10	266.558	-	-	0	1	1	DYNLL1|CCDS9200.1|r.367_368insa|c.113_114insA|p.A39fs*9|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	DYNLL1|CCDS9200.1|r.367_368insa|c.113_114insA|p.A39fs*9|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	9	11	9	11	0	0	./.	4	1	5	1	16	7	16	7	5	1	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788407968	13	61602840	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	61602840	61602859	2	10	271.227	-	-	9	1	-	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	4	1	26	22	26	22	4	1	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788425336	14	19818359	T	TG	325	PASS	-	-	-	-	-	Ins	-	I	19818359	19818360	1	24	424.371	-	-	0	1	-	-	-	./.	0	0	0	0	34	23	35	24	0	0	./.	3	5	0	0	58	71	62	72	3	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788431563	14	40113414	G	GGA	478	PASS	-	-	-	-	-	Ins	-	I	40113414	40113415	2	18	475.686	-	-	0	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	1	8	0	0	24	31	24	31	1	8	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788460510	15	49436169	CG	C	300	PASS	COPS2	CCDS45257.1	r.?	-	-	Del	intronic	D	49436169	49436175	1	10	271.819	-	-	5	1	1	COPS2|CCDS45257.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COPS2|CCDS45257.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	21	10	21	0	0	./.	1	4	3	5	19	28	19	28	3	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788474563	15	99033548	G	GT	300	PASS	FAM169B	CCDS45360.1	r.?	-	-	Ins	upstream	I	99033548	99033558	1	10	268.808	-	-	9	1	1	FAM169B|CCDS45360.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FAM169B|CCDS45360.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	16	13	17	0	0	./.	1	4	1	4	25	29	25	29	1	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788491893	16	60790588	GT	G	360	PASS	-	-	-	-	-	Del	-	D	60790588	60790594	1	16	325.912	-	-	5	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	4	3	23	20	23	20	4	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788499733	16	87199888	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	87199888	87199898	1	12	265.572	-	-	9	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	3	24	32	24	32	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788540415	18	52575960	CT	C	300	PASS	CCDC68	CCDS11959.1	r.?	-	-	Del	intronic	D	52575960	52575970	1	12	271.689	-	-	9	1	1	CCDC68|CCDS11959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC68|CCDS11959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	3	38	20	38	20	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788562680	19	44364870	AAAC	A	300	PASS	ZNF230	ENST00000421176	r.?	-	-	Del	intronic	D	44364870	44364888	3	10	272.091	-	-	5	1	1	ZNF230|ENST00000421176|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF230|ENST00000421176|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	4	1	5	2	33	23	33	23	5	2	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788571302	2	11562374	G	GGA	360	PASS	-	-	-	-	-	Ins	-	I	11562374	11562375	2	12	314.889	-	-	0	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	1	0	0	19	12	20	12	5	1	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788586014	2	63576328	G	GT	300	PASS	C2orf86	CCDS42688.1	r.?	-	-	Ins	intronic	I	63576328	63576338	1	12	266.421	-	-	9	1	1	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C2orf86|CCDS42688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	2	3	2	3	25	30	25	31	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788611984	2	160542773	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	160542773	160542789	2	12	269.431	-	-	7	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	3	2	3	28	18	28	18	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788617148	2	177979595	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	177979595	177979612	2	10	269.431	-	-	8	1	-	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	1	4	1	4	27	28	27	28	1	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788617577	2	179421002	C	CA	300	PASS	TTN	ENST00000342992	r.?	-	-	Ins	intronic	I	179421002	179421009	1	12	266.421	-	-	6	1	1	TTN|ENST00000342992|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTN|ENST00000342992|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	4	3	21	24	23	24	4	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788619395	2	185781615	G	GA	269	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Ins	intronic	I	185781615	185781625	1	12	246.553	-	-	9	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	2	3	23	31	24	31	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788648799	20	44958308	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	44958308	44958328	2	12	270.565	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	3	2	3	4	21	20	21	20	3	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788650225	20	49618660	AAG	A	300	PASS	KCNG1	CCDS13436.1	r.?	-	-	Del	downstream	D	49618660	49618677	2	12	270.565	-	-	8	1	1	KCNG1|CCDS13436.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNG1|CCDS13436.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	14	8	14	0	0	./.	2	3	2	4	25	28	25	28	2	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788688083	3	26356654	A	AT	406	PASS	-	-	-	-	-	Ins	-	I	26356654	26356664	1	20	372.544	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	4	3	4	4	20	18	21	18	4	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788713764	3	119980550	T	TC	269	PASS	GPR156	CCDS2997.1	r.?	-	-	Ins	intronic	I	119980550	119980551	1	12	265.759	-	-	0	1	-	GPR156|CCDS2997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GPR156|CCDS2997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	2	4	4	10	23	10	23	4	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788727355	3	170173500	A	AT	420	PASS	CLDN11	ENST00000486975	r.?	-	-	Ins	intronic	I	170173500	170173509	1	20	372.544	-	-	8	1	1	CLDN11|ENST00000486975|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLDN11|ENST00000486975|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	3	4	4	22	32	22	32	4	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788741889	4	22597399	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	22597399	22597401	1	15	320.108	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	4	3	30	19	30	19	4	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788753134	4	58742477	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	58742477	58742487	1	27	532.309	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	8	3	10	21	44	21	44	3	10	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788755535	4	66382258	CTG	C	300	PASS	EPHA5	CCDS3513.1	r.?	-	-	Del	intronic	D	66382258	66382276	2	12	268.563	-	-	8	1	-	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	3	21	21	21	21	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788774418	4	133149829	AC	A	360	PASS	-	-	-	-	-	Del	-	D	133149829	133149832	1	12	323.72	-	-	2	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	1	5	2	5	19	31	19	31	2	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788791778	4	188974213	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	188974213	188974223	1	12	266.155	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	10	17	0	0	./.	2	3	2	3	28	34	28	34	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788791964	4	189323058	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	189323058	189323059	1	18	372.857	-	-	0	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	2	5	3	5	19	23	20	24	3	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788799276	5	18597413	AT	A	420	PASS	-	-	-	-	-	Del	-	D	18597413	18597416	1	20	377.121	-	-	2	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	4	3	4	20	30	20	30	3	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788848390	6	17214508	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	17214508	17214526	2	12	270.185	-	-	8	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	3	2	3	21	19	21	19	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788851391	6	25703083	T	TTA	656	PASS	SCGN	CCDS4561.1	r.?	-	-	Ins	downstream	I	25703083	25703085	2	44	685.022	-	-	0	1	-	SCGN|CCDS4561.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SCGN|CCDS4561.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	6	10	6	11	0	0	./.	10	3	0	0	19	23	19	23	10	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788856265	6	39593200	GT	G	300	PASS	KIF6	CCDS4844.1	r.?	-	-	Del	intronic	D	39593200	39593203	1	10	269.583	-	-	2	1	1	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	1	4	1	4	18	13	18	13	1	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788877525	6	113191957	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	113191957	113191964	2	12	270.185	-	-	3	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	3	4	25	23	25	23	3	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788879587	6	120085468	TA	T	600	PASS	-	-	-	-	-	Del	-	D	120085468	120085471	1	36	540.371	-	-	2	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	5	7	5	30	27	30	27	7	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788888314	6	152975003	A	AGCC	261	PASS	-	-	-	-	-	Ins	-	I	152975003	152975007	3	12	312.783	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	12	0	0	./.	5	1	5	2	26	20	28	21	5	2	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788894956	7	2965409	C	CCTTGCACCTCCAATGTTGGCCTCTCCCTTCAGA	300	PASS	CARD11	CCDS5336.2	r.?	-	-	Ins	intronic	I	2965409	2965423	33	10	167.984	-	-	0	1	1	CARD11|CCDS5336.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CARD11|CCDS5336.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	0	0	23	18	27	19	4	1	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788905411	7	36398564	CTGA	C	389	PASS	KIAA0895	CCDS47573.1	r.?	-	-	Del	intronic	D	36398564	36398571	3	20	378.468	-	-	2	1	1	KIAA0895|CCDS47573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0895|CCDS47573.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	3	5	3	23	23	23	23	5	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788915229	7	67786763	AT	A	540	PASS	-	-	-	-	-	Del	-	D	67786763	67786770	1	30	486.602	-	-	6	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	4	5	4	5	35	22	35	22	4	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788920212	7	84573929	G	GA	329	PASS	-	-	-	-	-	Ins	-	I	84573929	84573939	1	15	314.768	-	-	9	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	4	2	4	2	31	34	31	34	4	2	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788928087	7	114233238	TA	T	660	PASS	FOXP2	CCDS43635.1	r.?	-	-	Del	intronic	D	114233238	114233241	1	36	594.736	-	-	2	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	8	4	8	22	28	22	28	4	8	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788935352	7	139599398	AT	A	300	PASS	TBXAS1	CCDS5855.1	r.?	-	-	Del	intronic	D	139599398	139599401	1	10	270.334	-	-	2	1	1	TBXAS1|CCDS5855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBXAS1|CCDS5855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	1	4	1	7	22	19	22	19	1	7	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788954085	8	40777151	CT	C	540	PASS	-	-	-	-	-	Del	-	D	40777151	40777159	1	30	487.257	-	-	7	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	5	4	6	25	29	25	29	4	6	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788958531	8	61506540	G	GA	269	PASS	RAB2A	CCDS6175.1	r.?	-	-	Ins	intronic	I	61506540	61506550	1	12	265.28	-	-	9	1	1	RAB2A|CCDS6175.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB2A|CCDS6175.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	2	3	2	3	30	17	31	17	2	3	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788984263	9	11139719	TG	T	420	PASS	-	-	-	-	-	Del	-	D	11139719	11139721	1	20	379.407	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	4	3	5	31	28	31	28	3	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788999537	9	83606219	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	83606219	83606226	1	10	267.995	-	-	6	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	1	4	1	4	22	30	22	30	1	4	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2788999930	9	85208306	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	85208306	85208313	1	20	375.193	-	-	6	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	4	3	5	20	22	20	22	3	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2789004870	9	104176403	AAAT	A	269	PASS	ZNF189	CCDS6755.1	r.?	-	-	Del	downstream	D	104176403	104176410	3	10	270.403	-	-	2	1	1	ZNF189|CCDS6755.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF189|CCDS6755.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	2	5	28	30	28	30	2	5	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2789019039	X	20786982	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	20786982	20786992	1	15	317.295	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	2	4	2	21	19	21	19	4	2	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2789034127	X	104915826	A	AT	300	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Ins	intronic	I	104915826	104915836	1	12	261.803	-	-	9	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	4	2	24	26	24	26	4	2	1	1	1	1	1	1	1	1
2838234	PD18761a	PD18761b	2789042875	X	151601171	ATAAT	A	269	PASS	GABRA3	CCDS14706.1	r.?	-	-	Del	intronic	D	151601171	151601181	4	12	271.436	-	-	2	1	1	GABRA3|CCDS14706.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABRA3|CCDS14706.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	3	3	18	18	18	18	3	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525294186	1	39219604	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	39219604	39219622	2	12	269.226	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	2	3	17	15	17	15	2	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525304392	1	77056253	GCAAA	G	329	PASS	ST6GALNAC3	CCDS672.1	r.?	-	-	Del	intronic	D	77056253	77056262	4	12	323.072	-	-	2	1	1	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST6GALNAC3|CCDS672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	1	5	2	7	24	25	24	25	2	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525309730	1	94942041	TC	T	360	PASS	ABCD3	CCDS749.1	r.?	-	-	Del	intronic	D	94942041	94942043	1	12	323.072	-	-	1	1	1	ABCD3|CCDS749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCD3|CCDS749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	5	1	6	2	25	14	25	14	6	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525310006	1	95702288	GA	G	389	PASS	RWDD3	CCDS41357.1	r.?	-	-	Del	intronic	D	95702288	95702291	1	14	372.101	-	-	2	1	1	RWDD3|CCDS41357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RWDD3|CCDS41357.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	6	2	6	26	27	26	27	2	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525315214	1	114022203	CTT	C	840	PASS	MAGI3	CCDS860.1	r.?	-	-	Del	intronic	D	114022203	114022207	2	60	752.028	-	-	3	1	1	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI3|CCDS860.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	5	9	7	9	26	21	26	21	7	9	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525324842	1	161854671	CTGTT	C	509	PASS	ATF6	CCDS1235.1	r.?	-	-	Del	intronic	D	161854671	161854680	4	30	484.608	-	-	2	1	1	ATF6|CCDS1235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATF6|CCDS1235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	5	4	8	4	26	36	26	36	8	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525325204	1	162979450	T	TCACACACACACACACACACACACACACATACA	261	PASS	-	-	-	-	-	Ins	-	I	162979450	162979471	32	30	294.357	-	-	0	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	4	0	0	14	24	19	29	5	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525325686	1	164733559	TTA	T	689	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164733559	164733565	2	48	645.541	-	-	2	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	21	8	21	0	0	./.	5	7	8	13	26	31	26	31	8	13	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525331276	1	183818044	AT	A	540	PASS	RGL1	CCDS1359.1	r.?	-	-	Del	intronic	D	183818044	183818050	1	30	484.608	-	-	5	1	1	RGL1|CCDS1359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGL1|CCDS1359.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	4	5	5	9	27	28	27	28	5	9	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525337041	1	201409253	CA	C	360	PASS	-	-	-	-	-	Del	-	D	201409253	201409258	1	15	321.868	-	-	4	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	2	4	4	5	8	11	8	11	4	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525339053	1	207940439	T	TTA	720	PASS	CD46	CCDS1482.1	r.911_912insua	c.755_756insTA	p.M253fs*46	Ins	frameshift	I	207940439	207940443	2	33	631.092	-	-	1	1	1	CD46|CCDS1482.1|r.911_912insua|c.755_756insTA|p.M253fs*46|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	CD46|CCDS1482.1|r.911_912insua|c.755_756insTA|p.M253fs*46|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	18	15	18	15	0	0	./.	2	10	6	11	28	28	28	28	6	11	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525349368	1	240109773	GA	G	360	PASS	-	-	-	-	-	Del	-	D	240109773	240109777	1	12	320.061	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	1	6	3	28	22	28	22	6	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525355986	10	8423390	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	8423390	8423397	1	10	481.024	-	-	6	1	1	-	-	./.	0	0	0	0	0	10	0	10	0	0	./.	0	9	0	13	0	22	0	22	0	13	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525363342	10	30553739	G	GAT	387	PASS	-	-	-	-	-	Ins	-	I	30553739	30553741	2	24	422.76	-	-	0	1	1	-	-	./.	0	0	0	0	9	8	9	9	0	0	./.	5	3	0	0	23	18	23	18	5	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525392642	10	130682835	TG	T	300	PASS	-	-	-	-	-	Del	-	D	130682835	130682838	1	6	270.246	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	0	6	0	26	17	26	17	6	0	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525408818	11	47701641	A	AC	300	PASS	AGBL2	CCDS7944.1	r.?	-	-	Ins	intronic	I	47701641	47701646	1	12	259.207	-	-	4	1	1	AGBL2|CCDS7944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGBL2|CCDS7944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	3	2	13	24	13	24	3	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525419855	11	90485519	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	90485519	90485528	1	10	267.636	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	1	4	2	24	12	24	12	4	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525422107	11	98261128	CATGGAAATAAGGCCCATCAGCTTCTCTGAGGCAACA	C	261	PASS	-	-	-	-	-	Del	-	D	98261128	98261167	36	28	487.164	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	6	3	3	2	26	20	29	21	6	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525426364	11	111508566	A	AT	418	PASS	SIK2	CCDS8347.1	r.?	-	-	Ins	intronic	I	111508566	111508570	1	24	427.014	-	-	3	1	1	SIK2|CCDS8347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SIK2|CCDS8347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	5	3	6	5	34	30	34	30	6	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525453796	12	70572235	CAAAG	C	507	PASS	-	-	-	-	-	Del	-	D	70572235	70572245	4	36	541.39	-	-	2	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	5	5	6	9	35	26	35	26	6	9	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525458966	12	89661516	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	89661516	89661523	1	10	266.481	-	-	6	1	1	-	-	./.	0	0	0	0	11	7	11	8	0	0	./.	1	4	4	5	24	20	24	20	4	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525475594	13	27895296	CAAGCCTGGCATGGTAA	C	261	PASS	-	-	-	-	-	Del	-	D	27895296	27895314	16	24	482.619	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	7	2	7	19	25	19	25	2	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525484763	13	58110921	G	GTTTAGGTT	319	PASS	-	-	-	-	-	Ins	-	I	58110921	58110932	8	42	538.692	-	-	1	1	1	-	-	./.	0	0	0	0	4	7	4	8	0	0	./.	5	6	6	6	28	25	28	25	6	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525488334	13	68651055	GAAC	G	480	PASS	-	-	-	-	-	Del	-	D	68651055	68651067	3	24	433.811	-	-	3	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	3	5	3	7	34	25	34	25	3	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525488626	13	69568093	CT	C	540	PASS	-	-	-	-	-	Del	-	D	69568093	69568098	1	24	487.435	-	-	4	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	7	4	7	20	24	20	24	4	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525493812	13	85575776	AC	A	480	PASS	-	-	-	-	-	Del	-	D	85575776	85575779	1	24	433.811	-	-	2	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	3	5	3	7	23	25	23	25	3	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525510913	14	43910862	A	AAAACAAAAAACTCAAGATGGATTAAAGACTTAAATGTAAGACCTAAAACCAT	300	PASS	-	-	-	-	-	Ins	-	I	43910862	43910866	52	12	114.996	-	-	0	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	0	0	26	20	26	20	2	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525519968	14	75279537	CT	C	420	PASS	YLPM1	CCDS45135.1	r.?	-	-	Del	intronic	D	75279537	75279540	1	20	380.144	-	-	2	1	1	YLPM1|CCDS45135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YLPM1|CCDS45135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	3	4	4	4	25	24	25	24	4	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525520064	14	75599700	G	GT	300	PASS	TMED10	CCDS9840.1	r.2614_2615insa	c.?	p.?	Ins	3'UTR variant	I	75599700	75599705	1	12	268.521	-	-	4	1	1	TMED10|CCDS9840.1|r.2614_2615insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	TMED10|CCDS9840.1|r.2614_2615insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	5	3	25	23	26	23	5	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525527596	14	101011625	G	GT	300	PASS	BEGAIN	CCDS9962.1	r.?	-	-	Ins	intronic	I	101011625	101011627	1	12	267.919	-	-	1	1	1	BEGAIN|CCDS9962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BEGAIN|CCDS9962.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	2	3	3	4	16	19	17	19	3	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525528270	14	103787795	GT	G	600	PASS	-	-	-	-	-	Del	-	D	103787795	103787799	1	27	543.064	-	-	3	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	2	8	2	8	17	28	17	28	2	8	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525575779	16	84752703	A	AGTT	300	PASS	USP10	CCDS45537.1	r.?	-	-	Ins	intronic	I	84752703	84752725	3	6	262.135	-	-	7	1	-	USP10|CCDS45537.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USP10|CCDS45537.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	0	5	1	7	13	22	13	23	1	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525599433	17	72556697	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	72556697	72556707	1	15	315.077	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	2	4	3	6	23	21	23	21	3	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525601612	17	79707583	CAGCCCCGTTCTCAGGAAATG	C	290	PASS	-	-	-	-	-	Del	-	D	79707583	79707606	20	32	542.588	-	-	1	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	7	3	8	3	13	14	13	14	8	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525609329	18	25081590	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	25081590	25081599	1	36	582.625	-	-	8	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	8	3	8	3	34	18	34	18	8	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525615043	18	46431553	GAGGGAGGAAGGGAAGGAAGGAAGGAAGGA	G	269	PASS	-	-	-	-	-	Del	-	D	46431553	46431601	29	10	271.671	-	-	1	1	-	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	4	1	0	0	18	13	18	13	4	1	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525619344	18	61122804	AT	A	300	PASS	-	-	-	-	-	Del	-	D	61122804	61122812	1	12	271.671	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	5	5	19	18	19	18	5	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525676035	2	123001191	G	GT	356	PASS	-	-	-	-	-	Ins	-	I	123001191	123001199	1	21	424.479	-	-	7	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	6	2	6	17	23	17	23	2	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525686690	2	159078397	GGA	G	300	PASS	CCDC148	CCDS33304.1	r.?	-	-	Del	intronic	D	159078397	159078415	2	6	268.836	-	-	8	1	1	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	5	0	5	0	21	14	21	14	5	0	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525694512	2	186891935	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	186891935	186891943	1	20	372.999	-	-	7	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	4	3	4	4	34	19	35	19	4	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525695414	2	189805893	C	CAA	360	PASS	-	-	-	-	-	Ins	-	I	189805893	189805897	2	15	316.101	-	-	3	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	6	2	23	25	23	25	6	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525759713	3	17208810	CTT	C	540	PASS	TBC1D5	CCDS33714.1	r.?	-	-	Del	intronic	D	17208810	17208816	2	28	485.162	-	-	5	1	1	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	3	8	3	22	20	22	20	8	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525760417	3	20699780	TA	T	300	PASS	-	-	-	-	-	Del	-	D	20699780	20699783	1	10	269.869	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	4	1	6	2	32	12	32	12	6	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525761031	3	22494816	CA	C	300	PASS	-	-	-	-	-	Del	-	D	22494816	22494819	1	10	269.267	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	1	4	3	4	22	17	22	17	3	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525765592	3	39308292	TA	T	300	PASS	CX3CR1	CCDS43069.1	r.?	-	-	Del	intronic	D	39308292	39308296	1	12	262.042	-	-	3	1	1	CX3CR1|CCDS43069.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CX3CR1|CCDS43069.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	2	3	3	4	13	20	13	20	3	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525766597	3	42824245	T	TA	300	PASS	HIGD1A	CCDS46806.1	r.?	-	-	Ins	downstream	I	42824245	42824247	1	10	266.859	-	-	1	1	1	HIGD1A|CCDS46806.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	HIGD1A|CCDS46806.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	6	18	6	18	0	0	./.	4	1	6	2	27	17	27	17	6	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525769637	3	54400534	AT	A	300	PASS	CACNA2D3	ENST00000474759	r.?	-	-	Del	intronic	D	54400534	54400536	1	12	269.869	-	-	1	1	1	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA2D3|ENST00000474759|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	3	2	6	2	27	17	27	17	6	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525770006	3	55938582	TA	T	420	PASS	ERC2	CCDS46851.1	r.?	-	-	Del	intronic	D	55938582	55938585	1	20	377.214	-	-	2	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	3	4	4	29	17	29	17	4	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525789995	3	123794239	AAG	A	480	PASS	KALRN	ENST00000448253	r.?	-	-	Del	upstream	D	123794239	123794242	2	21	431.79	-	-	1	1	1	KALRN|ENST00000448253|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	KALRN|ENST00000448253|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	6	2	6	2	21	27	21	27	6	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525795698	3	145492113	TA	T	300	PASS	-	-	-	-	-	Del	-	D	145492113	145492117	1	10	269.869	-	-	3	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	8	1	30	17	30	17	8	1	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525800006	3	160993600	CG	C	300	PASS	-	-	-	-	-	Del	-	D	160993600	160993604	1	12	268.665	-	-	3	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	2	3	2	18	25	18	25	3	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525817355	4	21993606	TATA	T	480	PASS	-	-	-	-	-	Del	-	D	21993606	21993613	3	21	431.5	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	6	2	6	26	30	26	30	2	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525827678	4	56256516	GA	G	300	PASS	-	-	-	-	-	Del	-	D	56256516	56256519	1	12	269.688	-	-	2	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	2	3	2	5	20	17	20	17	2	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525828842	4	59659418	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	59659418	59659420	1	16	320.013	-	-	1	1	-	-	-	./.	0	0	0	0	11	7	12	7	0	0	./.	3	3	5	5	25	19	28	20	5	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525830724	4	64586905	AG	A	540	PASS	-	-	-	-	-	Del	-	D	64586905	64586908	1	18	483.632	-	-	2	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	8	1	9	2	30	18	30	18	9	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525831697	4	67541212	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	67541212	67541222	1	10	264.269	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	13	13	0	0	./.	1	4	2	4	29	31	29	31	2	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525848894	4	126842732	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	126842732	126842736	2	12	323.625	-	-	3	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	5	1	7	2	25	25	25	25	7	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525849619	4	129602011	GA	G	300	PASS	-	-	-	-	-	Del	-	D	129602011	129602020	1	10	269.688	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	5	1	27	16	27	16	5	1	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525866701	4	184227666	T	TA	540	PASS	WWC2	CCDS34109.2	r.?	-	-	Ins	intronic	I	184227666	184227676	1	30	480.019	-	-	9	1	1	WWC2|CCDS34109.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WWC2|CCDS34109.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	4	5	5	5	24	31	24	31	5	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525870430	5	236715	G	GT	455	PASS	SDHA	CCDS3853.1	r.1547+1_1547+2insu	c.1432+1_1432+2insT	p.?	Ins	ess splice	I	236715	236717	1	35	522.968	-	-	1	1	1	SDHA|CCDS3853.1|r.1547+1_1547+2insu|c.1432+1_1432+2insT|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	SDHA|CCDS3853.1|r.1547+1_1547+2insu|c.1432+1_1432+2insT|p.?|protein_coding:CDS:extended_cis_splice_site:insertion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000667:SO:CGPX03:SO:0001576	./.	0	0	0	0	5	15	5	15	0	0	./.	4	6	4	6	12	24	13	24	4	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525873779	5	11076207	TG	T	360	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11076207	11076212	1	15	322.451	-	-	4	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	2	4	4	4	23	20	23	20	4	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525876726	5	20597981	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	20597981	20597991	1	15	320.644	-	-	9	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	2	4	6	4	21	26	21	27	6	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525883277	5	40806536	TTATAAA	T	290	PASS	-	-	-	-	-	Del	-	D	40806536	40806543	6	27	539.826	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	8	2	9	21	19	21	19	2	9	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525892032	5	78180213	AT	A	449	PASS	ARSB	CCDS4043.1	r.?	-	-	Del	intronic	D	78180213	78180221	1	25	432.342	-	-	7	1	1	ARSB|CCDS4043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARSB|CCDS4043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	4	4	4	5	25	15	25	15	5	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525894366	5	86077396	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	86077396	86077406	1	12	267.204	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	3	4	31	33	31	33	3	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525895051	5	89113542	GAACA	G	478	PASS	-	-	-	-	-	Del	-	D	89113542	89113555	4	28	485.783	-	-	3	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	6	3	6	21	28	21	28	3	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525897983	5	100969600	AACTC	A	269	PASS	-	-	-	-	-	Del	-	D	100969600	100969612	4	12	270.214	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	3	2	18	24	18	24	3	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525899912	5	108475738	TAAAC	T	300	PASS	FER	CCDS4098.1	r.?	-	-	Del	intronic	D	108475738	108475749	4	12	270.214	-	-	2	1	1	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	2	4	3	20	12	20	12	4	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525907820	5	139314140	GA	G	360	PASS	NRG2	CCDS47277.1	r.?	-	-	Del	intronic	D	139314140	139314148	1	16	322.451	-	-	7	1	1	NRG2|CCDS47277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG2|CCDS47277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	3	6	28	18	28	18	3	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525912293	5	156880769	AG	A	269	PASS	-	-	-	-	-	Del	-	D	156880769	156880771	1	12	257.571	-	-	1	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	4	20	22	20	22	2	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525957596	6	128293752	TATAG	T	507	PASS	PTPRK	CCDS47473.1	r.?	-	-	Del	intronic	D	128293752	128293760	4	32	540.26	-	-	1	1	1	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	7	3	9	24	36	24	36	3	9	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525957638	6	128417970	T	TA	600	PASS	PTPRK	CCDS47473.1	r.?	-	-	Ins	intronic	I	128417970	128417977	1	35	533.637	-	-	6	1	1	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	6	5	7	24	40	24	41	5	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525962012	6	145894957	T	TA	360	PASS	EPM2A	ENST00000450221	r.?	-	-	Ins	intronic	I	145894957	145894959	1	15	319.34	-	-	1	1	1	EPM2A|ENST00000450221|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPM2A|ENST00000450221|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	6	15	6	0	0	./.	4	2	4	4	27	22	27	23	4	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525978362	7	29201527	CA	C	480	PASS	CPVL	CCDS5419.1	r.?	-	-	Del	intronic	D	29201527	29201529	1	24	432.508	-	-	1	1	1	CPVL|CCDS5419.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CPVL|CCDS5419.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	5	3	6	18	17	18	17	3	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2525990915	7	71543921	A	AAAAC	480	PASS	CALN1	CCDS47603.1	r.?	-	-	Ins	intronic	I	71543921	71543941	4	24	410.834	-	-	4	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	5	3	8	3	28	18	28	18	8	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526003790	7	120567662	GCC	G	420	PASS	-	-	-	-	-	Del	-	D	120567662	120567665	2	18	378.445	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	2	6	3	22	23	22	23	6	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526011241	7	145657922	TG	T	464	PASS	ENSG00000237800	ENST00000439291	r.?	-	-	Del	intronic	D	145657922	145657925	1	21	432.509	-	-	2	1	1	ENSG00000237800|ENST00000439291|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237800|ENST00000439291|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	2	6	2	7	16	23	16	23	2	7	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526021397	8	17677590	TATATATGTATATATGTACACATATGTTTATATGTATAC	T	300	PASS	-	-	-	-	-	Del	-	D	17677590	17677641	38	12	270.637	-	-	1	1	-	-	-	./.	0	0	0	0	13	3	13	3	0	0	./.	2	3	0	0	19	12	19	12	2	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526025482	8	30713906	C	CA	298	PASS	-	-	-	-	-	Ins	-	I	30713906	30713916	1	15	294.06	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	11	7	0	0	./.	4	2	4	2	23	15	25	15	4	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526035322	8	72479297	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	72479297	72479304	1	25	427.601	-	-	6	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	4	4	4	6	33	28	33	28	4	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526042736	8	99550569	AAG	A	569	PASS	ENSG00000104375	CCDS47900.1	r.?	-	-	Del	intronic	D	99550569	99550573	2	27	541.275	-	-	1	1	1	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	8	2	8	2	27	28	27	28	8	2	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526053055	8	137888758	AT	A	480	PASS	-	-	-	-	-	Del	-	D	137888758	137888767	1	21	433.02	-	-	8	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	2	6	4	27	18	27	18	6	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526062031	9	22644667	GA	G	540	PASS	-	-	-	-	-	Del	-	D	22644667	22644674	1	30	487.716	-	-	6	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	5	8	10	22	33	22	33	8	10	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526080004	9	105876384	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	105876384	105876387	2	10	270.351	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	1	5	1	18	20	18	20	5	1	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526093871	X	19214656	GC	G	509	PASS	-	-	-	-	-	Del	-	D	19214656	19214660	1	30	486.308	-	-	3	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	4	5	4	6	14	27	14	27	4	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526096048	X	30500751	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	30500751	30500758	1	16	321.195	-	-	6	1	-	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	3	3	5	4	21	28	21	28	5	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526097716	X	38507530	A	AT	329	PASS	TSPAN7	CCDS14248.1	r.?	-	-	Ins	intronic	I	38507530	38507537	1	16	319.991	-	-	6	1	1	TSPAN7|CCDS14248.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSPAN7|CCDS14248.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	15	12	0	0	./.	3	3	4	4	26	26	27	26	4	4	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526101915	X	65613263	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	65613263	65613271	1	20	368.807	-	-	7	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	4	3	5	16	35	16	35	3	5	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526113130	X	121412850	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	121412850	121412859	1	12	319.389	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	11	0	0	./.	1	5	2	6	16	23	17	23	2	6	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526116671	X	138872950	CAA	C	420	PASS	ATP11C	CCDS14668.1	r.?	-	-	Del	intronic	D	138872950	138872953	2	18	379.042	-	-	2	1	1	ATP11C|CCDS14668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP11C|CCDS14668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	5	2	8	3	29	19	29	19	8	3	1	1	1	1	1	1	1	1
2291034	PD18762a	PD18762b	2526117276	X	141535653	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	141535653	141535663	1	12	268.164	-	-	9	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	3	2	3	3	28	24	28	24	3	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2540915903	1	30803167	A	AC	358	PASS	-	-	-	-	-	Ins	-	I	30803167	30803174	1	18	370.84	-	-	6	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	2	1	0	20	20	20	20	6	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2540942822	1	143491844	GT	G	291	PASS	-	-	-	-	-	Del	-	D	143491844	143491846	1	7	317.605	-	-	1	1	1	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	6	0	11	0	61	34	61	34	11	0	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2540954455	1	180285446	AGT	A	269	PASS	ACBD6	CCDS1339.1	r.?	-	-	Del	intronic	D	180285446	180285462	2	12	260.155	-	-	7	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	2	3	30	31	30	31	2	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2540984027	10	19772407	GC	G	480	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	19772407	19772409	1	24	431.245	-	-	1	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	3	5	6	6	24	24	24	24	6	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2540996931	10	65588606	A	AT	898	PASS	-	-	-	-	-	Ins	-	I	65588606	65588616	1	80	852.256	-	-	9	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	7	9	9	12	18	27	18	27	9	12	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541004043	10	90943129	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	90943129	90943145	2	10	269.077	-	-	7	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	1	4	1	4	17	29	17	29	1	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541033049	11	48670108	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	48670108	48670117	1	15	320.391	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	14	17	0	0	./.	4	2	6	2	33	28	33	28	6	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541053554	11	121884944	CA	C	420	PASS	-	-	-	-	-	Del	-	D	121884944	121884952	1	20	378.706	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	4	5	4	16	16	16	16	5	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541060927	12	12154623	G	GGA	300	PASS	-	-	-	-	-	Ins	-	I	12154623	12154624	2	6	258.02	-	-	0	1	1	-	-	./.	0	0	0	0	11	12	11	13	0	0	./.	0	5	1	0	15	16	15	16	1	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541097118	13	20281919	A	ATAT	269	PASS	PSPC1	CCDS41870.1	r.?	-	-	Ins	intronic	I	20281919	20281921	3	12	262.125	-	-	0	1	1	PSPC1|CCDS41870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PSPC1|CCDS41870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	3	2	3	5	29	32	29	32	3	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541103677	13	40425686	AG	A	335	PASS	-	-	-	-	-	Del	-	D	40425686	40425689	1	25	433.849	-	-	2	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	4	4	6	21	25	21	25	4	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541111013	13	64623291	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	64623291	64623293	1	12	266.941	-	-	1	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	2	3	5	5	23	30	24	30	5	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541113626	13	72309700	A	ATATGGGATATACGTA	495	PASS	DACH1	ENST00000305425	r.?	-	-	Ins	intronic	I	72309697	72309715	15	20	452.003	-	-	0	1	-	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	9	1	0	0	47	45	48	45	9	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541113845	13	73145749	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	73145749	73145759	1	10	263.329	-	-	9	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	1	5	1	33	18	33	18	5	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541132979	14	38505047	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	38505047	38505054	1	40	587.94	-	-	6	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	4	7	5	8	26	39	27	39	5	8	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541137453	14	51969238	TTTTA	T	478	PASS	FRMD6	CCDS9704.1	r.?	-	-	Del	intronic	D	51969238	51969246	4	30	488.431	-	-	1	1	1	FRMD6|CCDS9704.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FRMD6|CCDS9704.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	5	4	7	6	25	17	25	17	7	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541139152	14	57404867	TG	T	269	PASS	-	-	-	-	-	Del	-	D	57404867	57404869	1	12	240.043	-	-	1	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	4	20	30	21	30	3	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541150801	14	94996774	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	94996774	94996784	1	12	265.932	-	-	9	1	1	-	-	./.	0	0	0	0	11	18	12	19	0	0	./.	2	3	2	4	30	39	30	39	2	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541156022	15	23701482	TG	T	300	PASS	-	-	-	-	-	Del	-	D	23701482	23701484	1	6	271.737	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	0	5	2	7	16	29	16	29	2	7	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541174564	15	86462716	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	86462716	86462717	1	12	319.461	-	-	0	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	5	2	7	24	20	24	20	2	7	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541188556	16	27488250	CT	C	480	PASS	GTF3C1	CCDS32414.1	r.?	-	-	Del	intronic	D	27488250	27488255	1	25	434.409	-	-	4	1	1	GTF3C1|CCDS32414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GTF3C1|CCDS32414.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	4	4	8	4	29	22	29	22	8	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541194835	16	58554370	TTTTAA	T	507	PASS	CNOT1	CCDS10799.1	r.7909_7913delUUAAA	c.?	p.?	Del	3'UTR variant	D	58554370	58554377	5	32	542.41	-	-	1	1	1	CNOT1|CCDS10799.1|r.7909_7913delUUAAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CNOT1|CCDS10799.1|r.7909_7913delUUAAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	17	8	17	0	0	./.	7	3	9	5	21	24	21	24	9	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541197832	16	70164368	TC	T	456	PASS	ENSG00000090857	CCDS45520.1	r.1608delC	c.651delC	p.G220fs*50	Del	frameshift	D	70164368	70164370	1	21	434.409	-	-	1	1	1	ENSG00000090857|CCDS45520.1|r.1608delC|c.651delC|p.G220fs*50|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ENSG00000090857|CCDS45520.1|r.1608delC|c.651delC|p.G220fs*50|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	29	24	29	24	0	0	./.	6	2	8	3	45	25	45	25	8	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541202040	16	84025988	CG	C	300	PASS	NECAB2	CCDS10940.1	r.?	-	-	Del	intronic	D	84025988	84025990	1	12	268.496	-	-	1	1	1	NECAB2|CCDS10940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NECAB2|CCDS10940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	2	3	2	3	9	11	9	11	2	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541213676	17	31609483	G	GTA	300	PASS	ACCN1	CCDS11276.1	r.?	-	-	Ins	intronic	I	31609483	31609485	2	10	265.635	-	-	0	1	-	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	11	0	0	./.	4	1	0	0	28	21	28	21	4	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541226495	17	75712387	AT	A	300	PASS	-	-	-	-	-	Del	-	D	75712387	75712396	1	10	269.85	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	1	7	1	16	19	16	19	7	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541237180	18	32031638	AC	A	480	PASS	-	-	-	-	-	Del	-	D	32031638	32031641	1	25	434.56	-	-	2	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	4	4	7	4	28	25	28	25	7	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541238563	18	37248235	TTC	T	300	PASS	AC105201.1	ENST00000510201	r.?	-	-	Del	intronic	D	37248235	37248253	2	12	270.998	-	-	8	1	-	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	2	3	16	26	16	26	2	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541249186	18	72274715	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	72274715	72274718	2	6	270.396	-	-	1	1	1	-	-	./.	0	0	0	0	25	8	25	8	0	0	./.	0	5	0	5	16	34	16	34	0	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541250270	18	75805102	TAGCCTT	TAATA	296	PASS	-	-	-	-	-	Complex	-	DI	75805103	75805108	6	20	0	-	-	0	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	0	0	23	16	23	16	3	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541258011	19	20735221	C	CT	660	PASS	ZNF737	ENST00000344519	r.?	-	-	Ins	intronic	I	20735221	20735225	1	42	591.586	-	-	3	1	1	ZNF737|ENST00000344519|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF737|ENST00000344519|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	6	5	7	6	17	24	18	24	7	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541260945	19	31303919	AT	A	300	PASS	-	-	-	-	-	Del	-	D	31303919	31303927	1	12	269.505	-	-	7	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	2	7	4	36	21	36	21	7	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541264480	19	42332382	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	42332382	42332398	2	12	269.505	-	-	7	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	2	3	2	24	23	24	23	3	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541266246	19	47997119	AG	A	360	PASS	NAPA	CCDS12702.1	r.?	-	-	Del	intronic	D	47997119	47997122	1	16	326.296	-	-	2	1	1	NAPA|CCDS12702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAPA|CCDS12702.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	4	3	18	12	18	12	4	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541271566	2	4374383	AG	A	600	PASS	-	-	-	-	-	Del	-	D	4374383	4374385	1	36	538.211	-	-	1	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	5	5	7	7	25	31	25	31	7	7	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541283957	2	47503687	GCAATT	G	269	PASS	-	-	-	-	-	Del	-	D	47503687	47503693	5	12	261.58	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	3	3	11	14	11	14	3	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541286095	2	55208011	TAGA	T	416	PASS	RTN4	CCDS42684.1	r.?	-	-	Del	intronic	D	55208011	55208017	3	28	484.932	-	-	1	1	1	RTN4|CCDS42684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RTN4|CCDS42684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	3	6	5	8	22	32	22	32	5	8	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541293211	2	83132280	TTCTC	T	300	PASS	-	-	-	-	-	Del	-	D	83132280	83132291	4	10	269.407	-	-	5	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	1	4	1	4	18	30	18	30	1	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541302703	2	119820249	AT	A	517	PASS	-	-	-	-	-	Del	-	D	119820249	119820259	1	30	481.32	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	4	6	5	17	28	17	28	6	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541336430	2	236607080	G	GA	300	PASS	AGAP1	CCDS33408.1	r.?	-	-	Ins	intronic	I	236607080	236607090	1	10	264.59	-	-	9	1	1	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGAP1|CCDS33408.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	4	1	36	15	36	15	4	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541391848	3	35328172	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	35328172	35328181	1	12	320.229	-	-	8	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	5	1	7	2	24	14	24	14	7	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541399673	3	65112543	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	65112543	65112551	1	15	320.229	-	-	7	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	4	2	5	2	22	28	22	28	5	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541403745	3	76389172	TG	T	480	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76389172	76389175	1	24	431.186	-	-	2	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	3	5	3	5	15	20	15	20	3	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541426612	3	160001343	GA	G	300	PASS	IFT80	CCDS3188.1	r.?	-	-	Del	intronic	D	160001343	160001347	1	6	269.868	-	-	3	1	1	IFT80|CCDS3188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFT80|CCDS3188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	0	5	1	7	16	29	16	29	1	7	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541429014	3	168472310	GT	G	360	PASS	-	-	-	-	-	Del	-	D	168472310	168472319	1	16	323.841	-	-	8	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	3	3	4	5	21	26	21	26	4	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541430262	3	173093272	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	173093272	173093292	2	12	268.664	-	-	9	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	2	3	2	37	25	37	25	3	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541446628	4	30528775	GT	G	420	PASS	-	-	-	-	-	Del	-	D	30528775	30528780	1	20	377.535	-	-	4	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	4	4	5	28	24	28	24	4	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541450143	4	41525948	C	CA	300	PASS	LIMCH1	CCDS33977.1	r.?	-	-	Ins	intronic	I	41525948	41525950	1	12	266.657	-	-	1	1	1	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIMCH1|CCDS33977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	8	0	0	./.	3	2	4	4	20	17	20	17	4	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541497708	5	7047505	AG	A	540	PASS	-	-	-	-	-	Del	-	D	7047505	7047509	1	30	482.654	-	-	3	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	4	6	4	32	15	32	15	6	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541501561	5	19361433	GT	G	660	PASS	-	-	-	-	-	Del	-	D	19361433	19361440	1	40	592.52	-	-	6	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	4	7	5	9	21	27	21	27	5	9	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541502720	5	22590645	TTAAA	T	269	PASS	CDH12	CCDS3890.1	r.?	-	-	Del	intronic	D	22590645	22590652	4	12	270.148	-	-	1	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	3	2	5	2	29	17	29	17	5	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541508632	5	41749817	TA	T	420	PASS	OXCT1	CCDS3937.1	r.?	-	-	Del	intronic	D	41749817	41749821	1	20	378.207	-	-	3	1	1	OXCT1|CCDS3937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXCT1|CCDS3937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	4	4	5	20	19	20	19	4	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541508662	5	41866449	CAT	C	296	PASS	OXCT1	CCDS3937.1	r.?	-	-	Del	intronic	D	41866449	41866453	2	20	377.605	-	-	1	1	1	OXCT1|CCDS3937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXCT1|CCDS3937.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	3	4	4	4	25	20	25	20	4	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541512170	5	58044420	GGT	G	300	PASS	RAB3C	CCDS3976.1	r.?	-	-	Del	intronic	D	58044420	58044438	2	10	270.148	-	-	8	1	-	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB3C|CCDS3976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	4	1	3	25	32	25	32	1	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541520564	5	89214503	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	89214503	89214513	1	24	426.216	-	-	9	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	5	3	7	4	23	24	23	24	7	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541526108	5	110237094	TA	T	360	PASS	-	-	-	-	-	Del	-	D	110237094	110237103	1	15	324.178	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	2	4	5	23	22	23	22	4	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541526171	5	110540726	CAGTTTCAACTGGT	C	261	PASS	-	-	-	-	-	Del	-	D	110540726	110540742	13	28	485.664	-	-	1	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	6	3	6	24	24	24	24	3	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541526631	5	112232625	CA	C	420	PASS	REEP5	CCDS4109.2	r.?	-	-	Del	intronic	D	112232625	112232633	1	18	378.207	-	-	7	1	1	REEP5|CCDS4109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	REEP5|CCDS4109.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	2	5	3	5	21	27	21	27	3	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541559730	6	44415483	T	TAA	420	PASS	CDC5L	CCDS4912.1	r.3743_3744insaa	c.?	p.?	Ins	3'UTR variant	I	44415483	44415485	2	14	369.698	-	-	1	1	1	CDC5L|CCDS4912.1|r.3743_3744insaa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CDC5L|CCDS4912.1|r.3743_3744insaa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	18	15	18	15	0	0	./.	1	6	2	9	23	32	23	32	2	9	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541560239	6	46377748	TTC	T	300	PASS	RCAN2	ENST00000371374	r.?	-	-	Del	intronic	D	46377748	46377767	2	12	268.887	-	-	9	1	1	RCAN2|ENST00000371374|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RCAN2|ENST00000371374|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	3	3	15	23	15	23	3	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541571273	6	84311843	T	TA	540	PASS	SNAP91	CCDS47455.1	r.?	-	-	Ins	intronic	I	84311843	84311850	1	24	478.939	-	-	6	1	1	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNAP91|CCDS47455.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	20	18	20	0	0	./.	7	2	8	2	32	26	32	26	8	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541578458	6	109929669	G	GA	300	PASS	AKD1	ENST00000341338	r.?	-	-	Ins	intronic	I	109929669	109929679	1	10	266.478	-	-	9	1	1	AKD1|ENST00000341338|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AKD1|ENST00000341338|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	4	1	4	1	30	23	30	23	4	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541578578	6	110613836	TG	T	540	PASS	C6orf186	CCDS43489.1	r.?	-	-	Del	intronic	D	110613836	110613839	1	18	486.163	-	-	2	1	1	C6orf186|CCDS43489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C6orf186|CCDS43489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	8	1	8	2	34	21	34	21	8	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541578641	6	110927449	TG	T	300	PASS	CDK19	CCDS5085.1	r.?	-	-	Del	downstream	D	110927449	110927451	1	12	260.458	-	-	1	1	1	CDK19|CCDS5085.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CDK19|CCDS5085.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	6	12	6	0	0	./.	2	3	2	5	16	19	16	19	2	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541594307	6	166925594	AAC	A	269	PASS	RPS6KA2	CCDS5294.1	r.?	-	-	Del	intronic	D	166925594	166925612	2	12	265.274	-	-	8	1	-	RPS6KA2|CCDS5294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPS6KA2|CCDS5294.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	4	2	32	28	32	28	4	2	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541594774	6	168724011	T	TA	660	PASS	DACT2	CCDS47519.1	r.?	-	-	Ins	upstream	I	168724011	168724013	1	42	586.975	-	-	1	1	1	DACT2|CCDS47519.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	DACT2|CCDS47519.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	14	13	14	14	0	0	./.	5	6	5	6	20	32	20	32	5	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541603578	7	25332304	GA	G	600	PASS	-	-	-	-	-	Del	-	D	25332304	25332310	1	36	539.009	-	-	5	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	5	5	9	5	27	28	27	28	9	5	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541606988	7	36533342	TC	T	300	PASS	-	-	-	-	-	Del	-	D	36533342	36533348	1	12	263.484	-	-	5	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	3	3	4	24	16	24	16	3	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541608625	7	42154103	TTATTAG	T	348	PASS	GLI3	CCDS5465.1	r.?	-	-	Del	intronic	D	42154103	42154110	6	48	644.643	-	-	1	1	1	GLI3|CCDS5465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLI3|CCDS5465.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	5	7	5	6	28	22	28	23	5	7	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541614382	7	61873099	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	61873099	61873109	1	10	264.688	-	-	9	1	1	-	-	./.	0	0	0	0	38	32	38	33	0	0	./.	4	1	3	0	58	54	59	54	5	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541632270	7	120075786	GAT	G	300	PASS	KCND2	CCDS5776.1	r.?	-	-	Del	intronic	D	120075786	120075804	2	10	270.106	-	-	8	1	1	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCND2|CCDS5776.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	4	1	4	1	36	18	36	18	4	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541637790	7	138170118	C	CT	300	PASS	TRIM24	CCDS5847.1	r.?	-	-	Ins	intronic	I	138170118	138170122	1	10	260.473	-	-	3	1	1	TRIM24|CCDS5847.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIM24|CCDS5847.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	21	15	0	0	./.	1	4	6	8	22	23	22	23	6	8	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541639538	7	144219942	CT	C	300	PASS	TPK1	CCDS5888.1	r.?	-	-	Del	intronic	D	144219942	144219947	1	6	265.29	-	-	4	1	1	TPK1|CCDS5888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPK1|CCDS5888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	0	5	0	9	20	34	20	34	0	9	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541646133	8	4302034	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	4302034	4302042	1	10	267.485	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	1	5	1	24	14	24	15	5	1	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541660948	8	56174447	TA	T	300	PASS	XKR4	CCDS34893.1	r.?	-	-	Del	intronic	D	56174447	56174456	1	12	270.495	-	-	8	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	3	24	35	24	35	2	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541673104	8	100884281	GGTTGG	GTAA	476	PASS	VPS13B	CCDS6280.1	r.?	-	-	Complex	intronic	DI	100884282	100884286	5	35	0	-	-	0	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	4	6	0	0	25	21	25	21	4	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541683031	8	137220640	ATTC	A	449	PASS	-	-	-	-	-	Del	-	D	137220640	137220648	3	24	432.191	-	-	2	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	3	6	3	24	17	24	17	6	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541685822	9	981671	CG	C	420	PASS	DMRT3	CCDS6443.1	r.?	-	-	Del	intronic	D	981671	981674	1	14	379.301	-	-	2	1	1	DMRT3|CCDS6443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMRT3|CCDS6443.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	1	6	3	6	14	17	14	17	3	6	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541694190	9	30272687	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	30272687	30272696	1	15	321.503	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	15	9	0	0	./.	4	2	4	4	25	21	25	21	4	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541711965	9	113486940	GT	G	480	PASS	MUSK	CCDS48005.1	r.?	-	-	Del	intronic	D	113486940	113486945	1	24	433.487	-	-	4	1	1	MUSK|CCDS48005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MUSK|CCDS48005.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	5	3	6	3	23	27	23	27	6	3	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541713916	9	119613509	T	TA	480	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119613509	119613518	1	24	428.671	-	-	8	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	5	3	6	4	23	21	23	21	6	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541721425	X	8277621	TC	T	778	PASS	ENSG00000227978	ENST00000418307	r.?	-	-	Del	intronic	D	8277621	8277624	1	63	759.212	-	-	2	1	1	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	6	8	10	11	27	24	27	24	10	11	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541723162	X	16400137	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	16400137	16400145	1	15	321.162	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	4	4	24	24	24	24	4	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541729354	X	47900757	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	47900757	47900766	1	24	427.815	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	3	5	4	19	21	21	21	5	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541734244	X	78789146	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	78789146	78789149	1	12	267.535	-	-	2	1	1	-	-	./.	0	0	0	0	25	16	26	16	0	0	./.	2	3	3	4	25	25	25	25	3	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541737200	X	91477109	AG	A	300	PASS	PCDH11X	CCDS14461.1	r.?	-	-	Del	intronic	D	91477109	91477112	1	12	270.545	-	-	2	1	1	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH11X|CCDS14461.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	2	3	4	4	20	17	21	17	4	4	1	1	1	1	1	1	1	1
2291588	PD18763a	PD18763b	2541744151	X	124636870	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	124636870	124636876	1	20	372.983	-	-	5	1	1	-	-	./.	0	0	0	0	19	10	20	10	0	0	./.	4	3	6	3	21	18	21	18	6	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767749648	1	172521493	TC	T	360	PASS	C1orf9	CCDS1303.1	r.?	-	-	Del	intronic	D	172521493	172521499	1	12	322.276	-	-	5	1	1	C1orf9|CCDS1303.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf9|CCDS1303.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	5	1	7	1	35	21	35	21	7	1	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767756246	1	190575003	TG	T	300	PASS	-	-	-	-	-	Del	-	D	190575003	190575013	1	10	268.564	-	-	9	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	4	1	4	1	13	41	13	41	4	1	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767762844	1	208691493	T	TTATA	1196	PASS	-	-	-	-	-	Ins	-	I	208691493	208691497	4	143	1128.7	-	-	1	1	1	-	-	./.	0	0	0	0	29	21	29	21	0	0	./.	10	12	11	13	35	28	35	28	11	13	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767777047	1	244894798	ATGAT	A	360	PASS	-	-	-	-	-	Del	-	D	244894798	244894805	4	15	321.674	-	-	1	1	1	-	-	./.	0	0	0	0	25	26	25	26	0	0	./.	2	4	4	6	16	21	16	21	4	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767786939	10	18929926	TAA	T	360	PASS	NSUN6	CCDS7130.1	r.?	-	-	Del	intronic	D	18929926	18929930	2	15	323.411	-	-	3	1	1	NSUN6|CCDS7130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSUN6|CCDS7130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	2	4	2	5	17	26	17	26	2	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767806612	10	74092256	TG	T	540	PASS	DNAJB12	CCDS7316.2	r.?	-	-	Del	downstream	D	74092256	74092264	1	30	485.116	-	-	7	1	1	DNAJB12|CCDS7316.2|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	DNAJB12|CCDS7316.2|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	25	15	25	15	0	0	./.	5	4	9	4	25	18	25	18	9	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767814134	10	98001817	A	AC	360	PASS	BLNK	CCDS7446.1	r.?	-	-	Ins	intronic	I	98001817	98001825	1	15	311.972	-	-	7	1	1	BLNK|CCDS7446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BLNK|CCDS7446.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	19	25	19	0	0	./.	4	2	6	2	21	20	21	20	6	2	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767817284	10	106608518	TC	T	420	PASS	SORCS3	CCDS7558.1	r.?	-	-	Del	intronic	D	106608518	106608520	1	20	376.711	-	-	1	1	1	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS3|CCDS7558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	4	3	5	4	18	30	18	30	5	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767828698	11	3932789	A	AT	300	PASS	STIM1	CCDS7749.1	r.?	-	-	Ins	intronic	I	3932789	3932798	1	12	266.321	-	-	8	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	2	4	2	20	27	20	27	4	2	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767841012	11	38130154	GCA	G	420	PASS	-	-	-	-	-	Del	-	D	38130154	38130169	2	20	377.907	-	-	7	1	1	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	3	4	7	4	30	24	30	24	7	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767844551	11	47826594	CGCAGAACACAG	CT	319	PASS	NUP160	CCDS31484.1	r.?	-	-	Complex	intronic	DI	47826595	47826605	11	42	0	-	-	0	1	1	NUP160|CCDS31484.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	NUP160|CCDS31484.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	25	22	25	22	0	0	./.	5	6	0	0	21	23	21	23	5	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767861085	11	100488529	CTG	C	540	PASS	-	-	-	-	-	Del	-	D	100488529	100488533	2	30	485.881	-	-	1	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	5	4	6	4	23	17	23	17	6	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767864935	11	111660760	T	TA	360	PASS	ALG9	CCDS41714.1	r.?	-	-	Ins	intronic	I	111660760	111660768	1	15	317.9	-	-	7	1	1	ALG9|CCDS41714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALG9|CCDS41714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	2	4	5	5	19	21	19	21	5	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767939062	13	69975527	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	69975527	69975531	1	20	374.531	-	-	3	1	1	-	-	./.	0	0	0	0	23	36	23	36	0	0	./.	3	4	4	5	28	24	29	24	4	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767972244	14	69257104	CTG	C	718	PASS	ZFP36L1	CCDS9791.1	r.1959_1960delCA	c.161_162delCA	p.S54fs*20	Del	frameshift	D	69257104	69257107	2	50	702.985	-	-	1	1	1	ZFP36L1|CCDS9791.1|r.1959_1960delCA|c.161_162delCA|p.S54fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZFP36L1|CCDS9791.1|r.1959_1960delCA|c.161_162delCA|p.S54fs*20|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	16	15	16	15	0	0	./.	4	9	6	11	25	31	25	31	6	11	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767978163	14	85576270	AT	A	600	PASS	-	-	-	-	-	Del	-	D	85576270	85576272	1	36	540.48	-	-	1	1	1	-	-	./.	0	0	0	0	21	19	21	21	0	0	./.	5	5	7	5	22	24	25	25	7	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2767988080	15	24914562	CA	C	300	PASS	-	-	-	-	-	Del	-	D	24914562	24914567	1	10	271.01	-	-	4	1	1	-	-	./.	0	0	0	0	27	22	27	22	0	0	./.	1	4	1	6	17	20	17	20	1	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768035546	16	63601598	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	63601598	63601614	2	6	270.89	-	-	7	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	5	0	5	0	29	23	29	23	5	0	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768091496	18	50116305	TTGA	T	360	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50116305	50116313	3	16	323.349	-	-	2	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	29	24	29	0	0	./.	3	3	3	3	21	28	21	28	3	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768096379	18	63697889	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	63697889	63697899	1	12	267.952	-	-	9	1	1	-	-	./.	0	0	0	0	28	29	29	29	0	0	./.	2	3	5	3	18	21	18	22	5	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768122677	19	50774402	CAGA	C	381	PASS	MYH14	CCDS46151.1	r.?	-	-	Del	intronic	D	50774402	50774408	3	18	379.722	-	-	1	1	1	MYH14|CCDS46151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYH14|CCDS46151.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	5	3	6	23	23	23	23	3	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768130823	2	13609940	TCAAA	T	298	PASS	-	-	-	-	-	Del	-	D	13609940	13609947	4	15	322.453	-	-	1	1	1	-	-	./.	0	0	0	0	24	33	24	33	0	0	./.	4	2	4	3	17	27	17	27	4	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768150069	2	68808562	G	GT	660	PASS	APLF	CCDS1888.1	r.?	-	-	Ins	downstream	I	68808562	68808564	1	42	584.541	-	-	1	1	1	APLF|CCDS1888.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PROKR1|CCDS1889.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	28	20	28	0	0	./.	6	5	6	6	27	30	27	30	6	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768192575	2	202413725	TAC	T	300	PASS	ALS2CR11	CCDS2349.1	r.?	-	-	Del	intronic	D	202413725	202413740	2	10	268.711	-	-	7	1	1	ALS2CR11|CCDS2349.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALS2CR11|CCDS2349.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	4	1	4	1	18	21	18	21	4	1	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768194697	2	208472683	T	TA	314	PASS	CREB1	CCDS2375.1	r.?	-	-	Ins	downstream	I	208472683	208472685	1	15	318.84	-	-	1	1	1	CREB1|CCDS2375.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	FAM119A|ENST00000458426|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	14	24	15	0	0	./.	4	2	4	3	16	13	17	13	4	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768195547	2	210734947	ATTGC	A	449	PASS	UNC80	CCDS46504.1	r.?	-	-	Del	intronic	D	210734947	210734954	4	21	429.335	-	-	1	1	1	UNC80|CCDS46504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC80|CCDS46504.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	19	27	19	0	0	./.	6	2	8	3	25	24	25	24	8	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768201080	2	226902889	CAAAAAATTTG	C	348	PASS	-	-	-	-	-	Del	-	D	226902889	226902900	10	48	643.099	-	-	1	1	1	-	-	./.	0	0	0	0	25	21	25	21	0	0	./.	7	5	7	5	26	20	26	20	7	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768220414	20	40760892	A	AT	360	PASS	PTPRT	CCDS42874.1	r.?	-	-	Ins	intronic	I	40760892	40760894	1	15	322.285	-	-	1	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	35	21	36	21	0	0	./.	2	4	4	5	20	22	20	23	4	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768238731	21	32172167	AGTTT	A	300	PASS	-	-	-	-	-	Del	-	D	32172167	32172180	4	12	271.025	-	-	3	1	1	-	-	./.	0	0	0	0	34	35	34	35	0	0	./.	3	2	4	3	16	22	16	22	4	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768245819	22	17569199	C	CTTATTTAT	290	PASS	IL17RA	CCDS13739.1	r.?	-	-	Ins	intronic	I	17569199	17569224	8	36	497.228	-	-	6	1	-	IL17RA|CCDS13739.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL17RA|CCDS13739.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	24	25	24	0	0	./.	5	5	3	5	31	31	33	32	5	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768246905	22	20705124	CCT	C	340	PASS	USP41	ENST00000454608	r.1169_1170delAG	c.1169_1170delAG	p.E390fs*5	Del	frameshift	D	20705124	20705131	2	33	646.644	-	-	3	1	1	USP41|ENST00000454608|r.1169_1170delAG|c.1169_1170delAG|p.E390fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	USP41|ENST00000454608|r.1169_1170delAG|c.1169_1170delAG|p.E390fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	22	8	22	8	0	0	./.	10	2	10	2	43	19	43	19	10	2	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768275505	3	49797501	C	CT	300	PASS	IP6K1	CCDS43092.1	r.?	-	-	Ins	intronic	I	49797501	49797510	1	10	265.612	-	-	8	1	1	IP6K1|CCDS43092.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	IP6K1|CCDS43092.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	29	15	29	0	0	./.	1	4	2	5	13	17	13	17	2	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768330121	4	21513525	TTAA	T	389	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21513525	21513534	3	20	374.252	-	-	2	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	3	4	4	4	27	31	27	31	4	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768352749	4	87759462	T	TA	420	PASS	SLC10A6	CCDS3614.1	r.?	-	-	Ins	intronic	I	87759462	87759464	1	14	372.445	-	-	1	1	1	SLC10A6|CCDS3614.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC10A6|CCDS3614.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	23	31	23	0	0	./.	6	1	6	1	28	19	29	20	6	1	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768356041	4	97876696	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	97876696	97876706	1	18	372.445	-	-	9	1	1	-	-	./.	0	0	0	0	32	39	32	39	0	0	./.	5	2	5	2	22	23	22	24	5	2	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768359507	4	109803738	TTG	T	300	PASS	COL25A1	CCDS43258.1	r.?	-	-	Del	intronic	D	109803738	109803754	2	12	269.043	-	-	7	1	1	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	2	3	3	4	30	26	30	26	3	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768430338	5	126883690	G	GT	360	PASS	PRRC1	CCDS4143.1	r.?	-	-	Ins	intronic	I	126883690	126883698	1	12	319.788	-	-	7	1	1	PRRC1|CCDS4143.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRRC1|ENST00000442138|r.1351_1352insu|c.1205_1206insT|p.V405fs*2|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	28	28	28	29	0	0	./.	5	1	5	3	25	32	25	32	5	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768431083	5	129509085	A	AT	300	PASS	CHSY3	CCDS34223.1	r.?	-	-	Ins	intronic	I	129509085	129509087	1	12	257.459	-	-	1	1	1	CHSY3|CCDS34223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHSY3|CCDS34223.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	28	20	28	0	0	./.	3	2	5	4	33	19	33	19	5	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768434533	5	140687831	CTGT	C	360	PASS	SLC25A2	CCDS4258.1	r.?	-	-	Del	upstream	D	140687831	140687839	3	12	322.798	-	-	2	1	1	SLC25A2|CCDS4258.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SLC25A2|CCDS4258.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	20	20	20	20	0	0	./.	5	1	5	1	29	17	29	17	5	1	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768467570	6	50234289	TGA	T	397	PASS	-	-	-	-	-	Del	-	D	50234289	50234292	2	18	377.194	-	-	1	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	2	5	2	5	19	28	19	28	2	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768483944	6	100623923	GAGA	G	300	PASS	-	-	-	-	-	Del	-	D	100623923	100623929	3	12	269.424	-	-	1	1	1	-	-	./.	0	0	0	0	19	28	19	28	0	0	./.	2	3	3	6	18	37	18	37	3	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768495982	6	138529585	ATTAT	A	269	PASS	KIAA1244	CCDS5189.2	r.?	-	-	Del	intronic	D	138529585	138529592	4	12	257.985	-	-	1	1	1	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1244|CCDS5189.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	19	29	19	0	0	./.	2	3	4	4	22	21	22	21	4	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768496204	6	139245816	CAGGAATAATATAGA	CGAG	261	PASS	REPS1	CCDS47488.1	r.?	-	-	Complex	intronic	DI	139245817	139245830	14	28	0	-	-	0	1	1	REPS1|CCDS47488.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	REPS1|CCDS47488.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	14	30	14	30	0	0	./.	3	6	0	0	17	27	17	27	3	6	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768523163	7	44874601	TG	T	300	PASS	H2AFV	CCDS5495.1	r.?	-	-	Del	intronic	D	44874601	44874603	1	12	269.525	-	-	1	1	1	H2AFV|CCDS5495.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	H2AFV|ENST00000446531|r.963delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	21	22	21	22	0	0	./.	3	2	5	3	17	13	17	13	5	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768544897	7	106065328	ATC	A	360	PASS	-	-	-	-	-	Del	-	D	106065328	106065348	2	16	323.43	-	-	9	1	-	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	3	3	5	3	34	32	34	32	5	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768544975	7	106413598	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	106413598	106413606	1	15	318.011	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	19	0	0	./.	4	2	5	2	18	33	19	33	5	2	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768549755	7	122647939	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	122647939	122647948	1	12	261.096	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	3	2	4	29	19	29	19	2	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768552979	7	131028622	T	TA	360	PASS	MKLN1	CCDS34754.1	r.?	-	-	Ins	intronic	I	131028622	131028624	1	15	319.817	-	-	1	1	1	MKLN1|CCDS34754.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MKLN1|CCDS34754.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	33	16	34	17	0	0	./.	2	4	4	7	19	25	19	25	4	7	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768603811	8	129309884	CCTG	C	269	PASS	-	-	-	-	-	Del	-	D	129309884	129309888	3	12	269.941	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	2	3	2	3	14	17	14	17	2	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768607800	8	141993873	AG	A	420	PASS	PTK2	CCDS6381.1	r.?	-	-	Del	intronic	D	141993873	141993877	1	20	377.918	-	-	3	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	3	4	4	4	27	21	27	21	4	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768611840	9	8388831	AT	A	300	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8388831	8388836	1	12	270.24	-	-	4	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	21	30	21	0	0	./.	2	3	3	4	24	19	24	19	3	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768616981	9	24603885	TA	T	300	PASS	-	-	-	-	-	Del	-	D	24603885	24603888	1	10	270.24	-	-	2	1	1	-	-	./.	0	0	0	0	20	32	20	32	0	0	./.	1	4	5	5	35	33	35	33	5	5	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768631857	9	88311245	AATGGTGATATT	A	290	PASS	AGTPBP1	CCDS6672.1	r.?	-	-	Del	intronic	D	88311245	88311258	11	32	539.276	-	-	1	1	1	AGTPBP1|CCDS6672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGTPBP1|CCDS6672.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	30	30	30	0	0	./.	7	3	7	4	20	25	20	25	7	4	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768671165	X	93062161	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	93062161	93062171	1	12	267.47	-	-	9	1	1	-	-	./.	0	0	0	0	19	24	20	24	0	0	./.	3	2	3	3	29	25	29	25	3	3	1	1	1	1	1	1	1	1
2816441	PD18764a	PD18764b	2768672330	X	97348723	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	97348723	97348741	2	12	267.47	-	-	8	1	-	-	-	./.	0	0	0	0	15	29	15	29	0	0	./.	2	3	2	3	21	14	21	14	2	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529096354	1	10145460	TC	T	600	PASS	UBE4B	CCDS41245.1	r.?	-	-	Del	intronic	D	10145460	10145464	1	32	537.775	-	-	3	1	1	UBE4B|CCDS41245.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBE4B|CCDS41245.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	7	3	9	3	24	16	24	16	9	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529098006	1	16203610	CA	C	660	PASS	SPEN	CCDS164.1	r.?	-	-	Del	intronic	D	16203610	16203613	1	42	591.01	-	-	2	1	1	SPEN|CCDS164.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPEN|CCDS164.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	6	9	7	20	25	20	25	9	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529101875	1	28060619	G	GA	1140	PASS	FAM76A	CCDS44092.1	r.405_406insa	c.381_382insA	p.Y129fs*8	Ins	frameshift	I	28060619	28060622	1	110	1011.48	-	-	2	1	1	FAM76A|CCDS44092.1|r.405_406insa|c.381_382insA|p.Y129fs*8|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	FAM76A|CCDS44092.1|r.405_406insa|c.381_382insA|p.Y129fs*8|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	12	14	12	14	0	0	./.	10	9	12	12	20	31	20	31	12	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529104843	1	38775494	CTTTTTTT	C	377	PASS	-	-	-	-	-	Del	-	D	38775494	38775502	7	56	699.89	-	-	7	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	6	7	9	8	26	27	26	27	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529108954	1	53453011	CTTTG	C	447	PASS	SCP2	CCDS572.1	r.?	-	-	Del	intronic	D	53453011	53453016	4	24	484.539	-	-	1	1	1	SCP2|CCDS572.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCP2|CCDS572.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	7	2	11	4	28	8	28	8	11	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529117492	1	82613406	A	AAC	689	PASS	-	-	-	-	-	Ins	-	I	82613406	82613408	2	48	616.551	-	-	0	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	7	6	12	23	27	24	27	6	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529118347	1	85507674	GCA	G	300	PASS	MCOLN3	CCDS701.1	r.?	-	-	Del	intronic	D	85507674	85507694	2	12	265.576	-	-	9	1	-	MCOLN3|CCDS701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCOLN3|CCDS701.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	3	3	28	15	28	15	3	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529122445	1	99550419	CA	C	780	PASS	-	-	-	-	-	Del	-	D	99550419	99550424	1	44	699.288	-	-	4	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	10	3	13	6	31	20	31	20	13	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529126127	1	112583407	TTC	T	869	PASS	-	-	-	-	-	Del	-	D	112583407	112583410	2	66	807.565	-	-	1	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	10	5	11	6	16	15	16	15	11	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529126665	1	114378752	AT	A	1320	PASS	PTPN22	CCDS863.1	r.?	-	-	Del	intronic	D	114378752	114378755	1	143	1184.43	-	-	2	1	1	PTPN22|CCDS863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN22|CCDS863.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	12	10	13	11	26	20	26	20	13	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529129089	1	142638413	AG	A	472	PASS	-	-	-	-	-	Del	-	D	142638413	142638416	1	28	477.917	-	-	2	1	1	-	-	./.	0	0	0	0	38	32	38	32	0	0	./.	3	6	5	8	57	42	57	42	5	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529131046	1	145292266	CAT	C	441	PASS	ENSG00000163386	ENST00000369339	r.?	-	-	Del	intronic	D	145292266	145292271	2	48	645.45	-	-	2	1	1	ENSG00000163386|ENST00000369339|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000163386|ENST00000369339|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	58	68	58	68	0	0	./.	5	7	6	8	168	139	168	139	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529132508	1	150107206	AT	A	480	PASS	VPS45	CCDS944.1	r.?	-	-	Del	intronic	D	150107206	150107212	1	24	430.702	-	-	5	1	1	VPS45|CCDS944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS45|CCDS944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	5	3	7	5	27	22	27	22	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529133898	1	153978194	AT	A	269	PASS	NUP210L	CCDS41399.1	r.?	-	-	Del	intronic	D	153978194	153978204	1	6	256.545	-	-	9	1	-	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	0	9	2	28	17	28	17	9	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529135832	1	159711715	C	CA	506	PASS	-	-	-	-	-	Ins	-	I	159711715	159711717	1	28	473.702	-	-	1	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	3	7	4	25	16	27	16	7	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529136874	1	162794312	TAACGTG	T	319	PASS	-	-	-	-	-	Del	-	D	162794312	162794319	6	40	592.215	-	-	1	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	7	4	7	5	32	14	32	14	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529137228	1	163792550	ACTCCAGAGCC	A	348	PASS	-	-	-	-	-	Del	-	D	163792550	163792563	10	48	637.021	-	-	1	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	7	5	9	7	34	28	34	28	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529139349	1	169944763	G	GT	300	PASS	KIFAP3	CCDS1288.1	r.?	-	-	Ins	intronic	I	169944763	169944773	1	12	266.178	-	-	9	1	1	KIFAP3|CCDS1288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIFAP3|CCDS1288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	3	2	3	2	45	43	45	44	3	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529141021	1	174778639	AT	A	480	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Del	intronic	D	174778639	174778643	1	25	428.895	-	-	3	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	4	5	5	29	38	29	38	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529144200	1	184145376	CATTAT	C	745	PASS	-	-	-	-	-	Del	-	D	184145376	184145382	5	72	805.157	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	8	7	9	7	23	25	23	25	9	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529147991	1	194735968	GT	G	360	PASS	-	-	-	-	-	Del	-	D	194735968	194735970	1	7	320.016	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	0	8	0	41	27	41	27	8	0	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529148531	1	196566740	GA	G	780	PASS	KCNT2	CCDS1384.1	r.?	-	-	Del	intronic	D	196566740	196566743	1	56	699.89	-	-	2	1	1	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	6	7	9	9	22	15	22	15	9	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529148968	1	198153285	A	AT	1320	PASS	NEK7	CCDS1394.1	r.?	-	-	Ins	intronic	I	198153285	198153291	1	135	1171.18	-	-	5	1	1	NEK7|CCDS1394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NEK7|CCDS1394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	14	8	18	13	34	36	34	36	18	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529153845	1	213522692	ACGT	A	718	PASS	-	-	-	-	-	Del	-	D	213522692	213522696	3	54	699.288	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	8	7	10	25	20	25	20	7	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529156886	1	224323326	A	AAG	269	PASS	FBXO28	CCDS1539.1	r.?	-	-	Ins	intronic	I	224323326	224323328	2	10	251.729	-	-	0	1	-	FBXO28|CCDS1539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXO28|CCDS1539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	1	1	0	22	21	23	21	5	1	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529162158	1	240767918	AT	A	416	PASS	GREM2	CCDS31070.1	r.?	-	-	Del	intronic	D	240767918	240767928	1	30	484.539	-	-	9	1	1	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREM2|CCDS31070.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	5	4	6	8	23	20	23	20	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529165439	10	951788	TG	T	900	PASS	LARP4B	ENST00000406525	r.?	-	-	Del	intronic	D	951788	951791	1	60	810.59	-	-	2	1	1	LARP4B|ENST00000406525|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LARP4B|ENST00000406525|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	5	19	5	0	0	./.	11	4	12	9	20	18	20	18	12	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529169025	10	10509715	GCAA	G	776	PASS	-	-	-	-	-	Del	-	D	10509715	10509719	3	70	807.58	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	9	6	15	9	29	22	29	22	15	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529170897	10	15510671	AC	A	749	PASS	-	-	-	-	-	Del	-	D	15510671	15510673	1	54	699.501	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	8	5	11	9	23	22	23	22	11	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529171983	10	18875383	CA	C	269	PASS	NSUN6	CCDS7130.1	r.?	-	-	Del	intronic	D	18875383	18875385	1	10	268.391	-	-	1	1	1	NSUN6|CCDS7130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSUN6|CCDS7130.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	1	4	3	7	14	28	14	28	3	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529172044	10	19036736	AATTTT	A	267	PASS	-	-	-	-	-	Del	-	D	19036736	19036744	5	15	323.634	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	4	3	8	14	18	14	18	3	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529175682	10	30496024	CAA	C	300	PASS	AL160060.2	ENST00000502624	r.?	-	-	Del	intronic	D	30496024	30496027	2	10	270.197	-	-	2	1	1	AL160060.2|ENST00000502624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL160060.2|ENST00000502624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	2	6	9	15	9	15	2	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529186773	10	68160054	CAT	C	989	PASS	CTNNA3	CCDS7269.1	r.?	-	-	Del	intronic	D	68160054	68160058	2	88	918.669	-	-	1	1	1	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNNA3|CCDS7269.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	7	10	11	13	27	27	27	27	11	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529187957	10	71205446	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	71205446	71205450	1	6	263.574	-	-	3	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	5	0	10	2	17	11	17	11	10	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529191627	10	84281874	ACTGC	A	629	PASS	NRG3	CCDS31233.1	r.?	-	-	Del	intronic	D	84281874	84281879	4	30	589.014	-	-	1	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	2	9	3	11	15	17	15	17	3	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529195197	10	96481579	GGT	G	300	PASS	CYP2C18	CCDS7435.1	r.?	-	-	Del	intronic	D	96481579	96481597	2	10	267.789	-	-	8	1	1	CYP2C18|CCDS7435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYP2C18|CCDS7435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	1	4	2	4	19	24	19	24	2	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529200226	10	114119919	GTCTATAAAC	G	348	PASS	-	-	-	-	-	Del	-	D	114119919	114119930	9	45	647.268	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	8	5	9	11	19	11	19	5	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529201063	10	117541572	TAATATC	T	464	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	117541572	117541580	6	77	864.63	-	-	1	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	10	6	15	5	33	20	33	21	15	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529202183	10	121060791	GT	G	360	PASS	GRK5	CCDS7612.1	r.?	-	-	Del	intronic	D	121060791	121060794	1	12	322.43	-	-	2	1	1	GRK5|CCDS7612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRK5|CCDS7612.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	1	5	4	9	17	20	17	20	4	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529202747	10	122704860	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	122704860	122704864	1	15	320.624	-	-	3	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	4	2	6	5	15	16	16	16	6	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529203285	10	124089023	CG	C	480	PASS	BTBD16	CCDS31301.1	r.1192delG	c.941delG	p.D315fs*2	Del	frameshift	D	124089023	124089027	1	16	431.713	-	-	3	1	1	BTBD16|CCDS31301.1|r.1192delG|c.941delG|p.D315fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	BTBD16|CCDS31301.1|r.1192delG|c.941delG|p.D315fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	8	11	8	0	0	./.	7	1	7	3	22	12	22	12	7	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529209350	11	8191332	TC	T	540	PASS	RIC3	CCDS7788.1	r.?	-	-	Del	upstream	D	8191332	8191334	1	28	485.925	-	-	1	1	1	RIC3|CCDS7788.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RIC3|CCDS7788.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	16	15	16	0	0	./.	6	3	7	5	20	19	20	19	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529211851	11	16527081	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	16527081	16527090	1	15	318.13	-	-	8	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	4	2	9	7	32	23	32	23	9	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529219953	11	41221273	TC	T	300	PASS	-	-	-	-	-	Del	-	D	41221273	41221275	1	12	270.627	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	3	2	3	2	26	24	26	24	3	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529223118	11	51517257	CA	C	809	PASS	OR4C46	CCDS31498.1	r.?	-	-	Del	downstream	D	51517257	51517261	1	63	757.154	-	-	3	1	1	OR4C46|CCDS31498.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR4C46|CCDS31498.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	16	13	16	13	0	0	./.	8	6	10	6	22	20	22	20	10	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529224524	11	59965471	TG	T	809	PASS	MS4A4E	ENST00000427611	r.?	-	-	Del	downstream	D	59965471	59965473	1	63	755.348	-	-	1	1	1	MS4A4E|ENST00000427611|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MS4A4E|ENST00000427611|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	17	12	17	0	0	./.	8	6	11	7	26	24	26	24	11	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529227303	11	69642665	TTTTA	T	720	PASS	-	-	-	-	-	Del	-	D	69642665	69642677	4	40	648.904	-	-	2	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	3	9	5	12	16	24	16	24	5	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529227946	11	72127127	AAC	A	420	PASS	CLPB	CCDS8215.1	r.?	-	-	Del	intronic	D	72127127	72127133	2	20	378.878	-	-	2	1	1	CLPB|CCDS8215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLPB|CCDS8215.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	4	5	5	11	16	11	16	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529228349	11	73560632	G	GT	780	PASS	MRPL48	CCDS44676.1	r.?	-	-	Ins	intronic	I	73560632	73560639	1	54	695.804	-	-	6	1	1	MRPL48|CCDS44676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MRPL48|CCDS44676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	12	17	0	0	./.	8	5	10	7	23	16	23	17	10	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529230428	11	81144238	G	GT	296	PASS	-	-	-	-	-	Ins	-	I	81144238	81144244	1	20	373.46	-	-	5	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	3	4	7	4	22	12	22	12	7	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529232381	11	88189015	AC	A	300	PASS	-	-	-	-	-	Del	-	D	88189015	88189017	1	6	270.627	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	0	6	0	19	31	19	31	6	0	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529233289	11	91149439	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	91149439	91149441	1	54	692.192	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	5	8	7	10	19	23	20	23	7	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529238512	11	107701820	GGCACAAT	G	348	PASS	SLC35F2	CCDS41709.1	r.?	-	-	Del	intronic	D	107701820	107701828	7	48	648.904	-	-	1	1	1	SLC35F2|CCDS41709.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F2|CCDS41709.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	5	7	6	7	17	15	17	15	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529239082	11	109874681	AT	A	540	PASS	-	-	-	-	-	Del	-	D	109874681	109874687	1	28	486.527	-	-	5	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	6	6	7	20	23	20	23	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529239845	11	112243997	TTCACA	TTC	534	PASS	-	-	-	-	-	Complex	-	DI	112243998	112244002	5	40	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	3	9	0	0	28	24	28	24	3	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529240073	11	113012789	ACAG	AT	627	PASS	NCAM1	ENST00000404693	r.?	-	-	Complex	intronic	DI	113012790	113012792	3	49	0	-	-	0	1	1	NCAM1|ENST00000404693|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	NCAM1|ENST00000404693|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	6	6	0	0	20	26	20	26	6	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529242665	11	122036079	AC	A	600	PASS	-	-	-	-	-	Del	-	D	122036079	122036088	1	27	540.653	-	-	8	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	8	4	11	15	27	15	27	4	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529243119	11	123522919	CCT	C	540	PASS	SCN3B	CCDS8442.1	r.?	-	-	Del	intronic	D	123522919	123522923	2	30	487.129	-	-	1	1	1	SCN3B|CCDS8442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN3B|CCDS8442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	5	9	8	21	25	21	25	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529245212	11	131011074	AT	A	929	PASS	-	-	-	-	-	Del	-	D	131011074	131011078	1	81	865.405	-	-	3	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	8	8	9	10	30	19	30	19	9	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529245249	11	131200820	AG	A	600	PASS	-	-	-	-	-	Del	-	D	131200820	131200822	1	35	541.255	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	6	10	8	22	24	22	24	10	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529249277	12	9417737	TAATTCAA	T	522	PASS	-	-	-	-	-	Del	-	D	9417737	9417746	7	99	973.392	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	10	8	11	9	28	21	28	21	11	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529253467	12	21536449	CTCTGGGA	C	319	PASS	SLCO1A2	CCDS8686.1	r.?	-	-	Del	intronic	D	21536449	21536460	7	40	595.586	-	-	1	1	1	SLCO1A2|CCDS8686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLCO1A2|CCDS8686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	7	4	7	5	13	16	13	16	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529255179	12	26674824	ACT	A	1409	PASS	ITPR2	CCDS41764.1	r.?	-	-	Del	intronic	D	26674824	26674829	2	165	1296.45	-	-	2	1	1	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	14	10	15	11	26	33	26	33	15	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529259940	12	44285016	AT	A	540	PASS	TMEM117	CCDS8745.1	r.?	-	-	Del	intronic	D	44285016	44285018	1	28	486.094	-	-	1	1	1	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM117|CCDS8745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	3	6	3	6	17	15	17	15	3	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529262562	12	53664772	TACAACAGCAGACAC	T	290	PASS	ESPL1	CCDS8852.1	r.?	-	-	Del	intronic	D	53664772	53664787	14	36	540.238	-	-	1	1	1	ESPL1|CCDS8852.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESPL1|CCDS8852.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	5	5	5	5	17	14	17	14	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529264877	12	62048750	GTCCCCATGACACAAACACC	G	290	PASS	-	-	-	-	-	Del	-	D	62048750	62048774	19	32	536.626	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	7	3	6	14	15	14	16	3	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529270035	12	80532089	AGTTTCCTCATC	A	464	PASS	-	-	-	-	-	Del	-	D	80532089	80532101	11	81	866.308	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	8	8	8	8	14	23	14	23	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529270089	12	80715954	G	GA	780	PASS	C12orf64	ENST00000442704	r.?	-	-	Ins	intronic	I	80715954	80715956	1	50	695.446	-	-	1	1	1	C12orf64|ENST00000442704|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf64|ENST00000442704|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	9	4	9	5	22	19	22	20	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529274375	12	96103041	GGAAAGGAAGG	GAAAGGATT	290	PASS	NTN4	CCDS9054.1	r.?	-	-	Complex	intronic	DI	96103042	96103051	10	35	0	-	-	0	1	1	NTN4|CCDS9054.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	NTN4|CCDS9054.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	6	4	0	0	15	14	15	14	6	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529275770	12	101002442	GGCGCCTGGCACCGTGCCCAGC	G	348	PASS	GAS2L3	CCDS9079.1	r.?	-	-	Del	intronic	D	101002442	101002464	21	48	632.873	-	-	1	1	1	GAS2L3|CCDS9079.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS2L3|CCDS9079.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	5	7	4	6	11	14	12	15	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529280984	12	120420419	TC	T	660	PASS	-	-	-	-	-	Del	-	D	120420419	120420422	1	42	595.586	-	-	2	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	5	6	7	8	18	17	18	17	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529282303	12	124571804	AG	A	540	PASS	-	-	-	-	-	Del	-	D	124571804	124571806	1	28	486.696	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	6	3	9	5	23	12	23	12	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529282633	12	125489779	AAG	A	420	PASS	BRI3BP	CCDS9262.1	r.?	-	-	Del	intronic	D	125489779	125489783	2	20	379.01	-	-	1	1	1	BRI3BP|CCDS9262.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRI3BP|CCDS9262.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	4	4	6	12	15	12	15	4	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529287798	13	24736854	CTATAA	C	561	PASS	SPATA13	CCDS9305.1	r.?	-	-	Del	intronic	D	24736854	24736861	5	63	757.004	-	-	1	1	1	SPATA13|CCDS9305.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPATA13|CCDS9305.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	6	8	8	8	25	17	25	17	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529289105	13	28312999	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	28312999	28313008	1	25	429.134	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	4	4	8	8	23	25	23	25	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529291983	13	37560546	AT	A	660	PASS	ALG5	CCDS9361.1	r.?	-	-	Del	intronic	D	37560546	37560548	1	36	594.875	-	-	1	1	1	ALG5|CCDS9361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALG5|CCDS9361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	8	3	8	7	25	24	25	24	8	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529295229	13	48331746	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	48331746	48331749	1	45	643.098	-	-	2	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	8	4	13	4	30	15	30	16	13	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529298523	13	61354079	CAGG	CA	418	PASS	-	-	-	-	-	Complex	-	DI	61354080	61354082	3	21	0	-	-	0	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	6	2	0	0	24	16	24	16	6	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529300051	13	65349224	AGTAAATATTATGCTCAAAG	A	394	PASS	-	-	-	-	-	Del	-	D	65349224	65349252	19	60	758.811	-	-	1	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	9	5	8	5	22	28	23	28	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529301604	13	70445936	AGACTT	AGC	567	PASS	KLHL1	CCDS9445.1	r.?	-	-	Complex	intronic	DI	70445937	70445941	5	36	0	-	-	0	1	1	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	3	8	0	0	13	26	13	26	3	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529309163	13	95431914	TG	T	720	PASS	AL139381.2	ENST00000505287	r.?	-	-	Del	intronic	D	95431914	95431917	1	40	649.119	-	-	2	1	1	AL139381.2|ENST00000505287|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL139381.2|ENST00000505287|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	9	3	10	5	28	15	28	15	10	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529310457	13	99631661	CA	C	660	PASS	DOCK9	CCDS45062.1	r.?	-	-	Del	upstream	D	99631661	99631663	1	42	596.079	-	-	1	1	1	DOCK9|CCDS45062.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DOCK9|ENST00000400220|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	5	6	5	9	21	20	21	20	5	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529311672	13	103321980	GAGGGGAC	G	319	PASS	TPP2	CCDS9502.1	r.?	-	-	Del	intronic	D	103321980	103321989	7	40	596.681	-	-	1	1	1	TPP2|CCDS9502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPP2|CCDS9502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	4	7	4	21	11	21	11	7	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529313180	13	107695308	TTCCA	TG	255	PASS	-	-	-	-	-	Complex	-	DI	107695309	107695312	4	16	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	3	0	0	17	17	17	17	3	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529314785	13	112639027	AG	A	720	PASS	-	-	-	-	-	Del	-	D	112639027	112639030	1	45	650.925	-	-	2	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	8	4	8	7	19	18	19	18	8	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529316410	14	21918048	T	TA	637	PASS	-	-	-	-	-	Ins	-	I	21918048	21918052	1	42	590.738	-	-	3	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	6	5	9	8	21	25	22	25	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529328165	14	59301032	A	AG	629	PASS	-	-	-	-	-	Ins	-	I	59301032	59301036	1	42	585.319	-	-	3	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	5	6	6	18	20	18	20	6	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529328518	14	60725487	AG	A	1200	PASS	PPM1A	CCDS9744.1	r.?	-	-	Del	intronic	D	60725487	60725490	1	120	1084.91	-	-	2	1	1	PPM1A|CCDS9744.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPM1A|CCDS9744.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	11	9	12	10	25	24	25	24	12	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529328699	14	61416505	A	AT	269	PASS	MNAT1	CCDS9750.1	r.?	-	-	Ins	intronic	I	61416505	61416515	1	10	258.282	-	-	9	1	1	MNAT1|CCDS9750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MNAT1|CCDS9750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	16	0	0	./.	4	1	4	1	29	34	30	35	4	1	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529331312	14	69768037	AT	A	780	PASS	GALNTL1	CCDS32107.1	r.?	-	-	Del	intronic	D	69768037	69768040	1	54	699.951	-	-	2	1	1	GALNTL1|CCDS32107.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNTL1|CCDS32107.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	18	4	18	0	0	./.	5	8	9	12	22	30	22	30	9	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529333489	14	77073133	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	77073133	77073140	1	16	320.415	-	-	6	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	9	4	18	17	18	17	9	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529334185	14	78916644	TG	T	1080	PASS	-	-	-	-	-	Del	-	D	78916644	78916647	1	99	975.091	-	-	2	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	8	10	11	15	19	29	19	29	11	15	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529335244	14	83150119	TG	T	569	PASS	-	-	-	-	-	Del	-	D	83150119	83150121	1	35	543.055	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	6	4	10	10	24	20	24	20	10	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529339347	14	96444456	G	GA	690	PASS	-	-	-	-	-	Ins	-	I	96444456	96444457	1	60	751.848	-	-	0	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	5	9	6	10	25	31	25	31	6	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529346249	15	29688905	C	CT	629	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Ins	intronic	I	29688905	29688910	1	42	589.279	-	-	4	1	1	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	19	8	19	0	0	./.	6	5	8	6	22	27	22	27	8	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529347181	15	33193953	T	TAC	360	PASS	FMN1	CCDS45209.1	r.?	-	-	Ins	intronic	I	33193953	33193966	2	16	318.798	-	-	6	1	1	FMN1|CCDS45209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN1|CCDS45209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	3	6	8	20	30	21	30	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529348218	15	35710366	CG	C	660	PASS	ATPBD4	CCDS10043.1	r.?	-	-	Del	intronic	D	35710366	35710368	1	36	597.708	-	-	1	1	1	ATPBD4|CCDS10043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATPBD4|CCDS10043.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	8	6	9	18	17	18	17	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529350058	15	41466018	AT	A	358	PASS	-	-	-	-	-	Del	-	D	41466018	41466022	1	18	379.155	-	-	3	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	2	8	3	24	21	24	21	8	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529358244	15	67439501	A	AAG	480	PASS	SMAD3	CCDS10222.1	r.?	-	-	Ins	intronic	I	67439501	67439516	2	25	423.859	-	-	7	1	1	SMAD3|CCDS10222.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMAD3|CCDS10222.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	4	4	4	5	18	16	18	16	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529358438	15	68095263	AG	A	600	PASS	MAP2K5	CCDS10224.1	r.?	-	-	Del	intronic	D	68095263	68095266	1	36	534.942	-	-	2	1	1	MAP2K5|CCDS10224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP2K5|CCDS10224.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	5	5	5	6	20	17	20	17	5	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529358618	15	68585856	CTGT	C	749	PASS	FEM1B	CCDS10228.1	r.4776_4778delUGU	c.?	p.?	Del	3'UTR variant	D	68585856	68585862	3	56	706.382	-	-	1	1	1	FEM1B|CCDS10228.1|r.4776_4778delUGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	FEM1B|CCDS10228.1|r.4776_4778delUGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	13	14	13	0	0	./.	7	6	10	8	24	22	24	22	10	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529359807	15	72854125	CCAACATGGCGAAACCCTGTCTCTT	C	261	PASS	MIR630	CCDS10244.1	r.?	-	-	Del	intronic	D	72854125	72854151	24	30	478.798	-	-	1	1	1	MIR630|CCDS10244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR630|CCDS10244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	5	3	4	15	15	16	16	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529365285	15	92120081	TG	T	480	PASS	-	-	-	-	-	Del	-	D	92120081	92120084	1	25	434.696	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	4	6	5	20	13	20	13	6	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529365384	15	92624488	TA	T	509	PASS	SLCO3A1	CCDS10371.1	r.?	-	-	Del	intronic	D	92624488	92624491	1	30	486.625	-	-	2	1	1	SLCO3A1|CCDS10371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLCO3A1|CCDS10371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	5	7	9	15	20	15	20	7	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529366458	15	96021298	GAAGAAAGGTCATGAGATTTAT	G	406	PASS	-	-	-	-	-	Del	-	D	96021298	96021320	21	55	760.117	-	-	1	1	1	-	-	./.	0	0	0	0	13	24	13	24	0	0	./.	4	10	4	10	17	22	17	22	4	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529368785	16	895913	GA	G	749	PASS	-	-	-	-	-	Del	-	D	895913	895918	1	50	703.461	-	-	4	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	4	9	9	10	23	27	23	27	9	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529372166	16	10903272	GC	G	420	PASS	FAM18A	CCDS45408.1	r.?	-	-	Del	intronic	D	10903272	10903275	1	20	379.481	-	-	2	1	1	FAM18A|CCDS45408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM18A|CCDS45408.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	4	3	8	11	20	11	20	3	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529372608	16	12050758	AGGAG	A	745	PASS	-	-	-	-	-	Del	-	D	12050758	12050765	4	72	814.464	-	-	1	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	7	8	8	8	14	26	14	26	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529374739	16	19389995	CA	C	507	PASS	-	-	-	-	-	Del	-	D	19389995	19389997	1	36	541.772	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	5	8	7	21	21	21	21	8	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529376196	16	24546239	TC	T	480	PASS	RBBP6	CCDS45444.1	r.?	-	-	Del	upstream	D	24546239	24546241	1	24	434.381	-	-	1	1	1	RBBP6|CCDS45444.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RBBP6|CCDS45444.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	10	7	10	0	0	./.	5	3	5	7	15	24	15	24	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529379735	16	33543350	TA	T	816	PASS	-	-	-	-	-	Del	-	D	33543350	33543358	1	60	760.166	-	-	7	1	1	-	-	./.	0	0	0	0	54	83	54	83	0	0	./.	9	5	12	8	134	127	134	127	12	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529386360	16	64804541	AG	A	600	PASS	-	-	-	-	-	Del	-	D	64804541	64804544	1	32	542.374	-	-	2	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	7	3	9	8	17	18	17	18	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529388142	16	71062480	TC	T	300	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Del	intronic	D	71062480	71062485	1	12	269.08	-	-	4	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	24	21	24	0	0	./.	2	3	6	3	55	55	55	55	6	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529388495	16	71871792	TC	T	600	PASS	-	-	-	-	-	Del	-	D	71871792	71871795	1	32	533.343	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	7	5	8	17	24	17	24	5	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529389078	16	73698055	AC	A	720	PASS	-	-	-	-	-	Del	-	D	73698055	73698058	1	48	651.571	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	7	5	10	7	35	18	35	18	10	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529389487	16	74837670	AAATT	A	538	PASS	-	-	-	-	-	Del	-	D	74837670	74837676	4	35	541.772	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	6	5	11	23	25	23	25	5	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529390434	16	77634744	TAAGGAAAAAGAATAAAGTCATTATCCATAGAGACACAGCAATTGAAATTACTGCAGATTTGTCACTAGAAACTGATAGTTACAGGAGGCAGCTCAATGCCTAGGCAGAAAGGGGCAGATCCCTGTTGAAACCCCACCTCCAAGGCAAAGACAATTTAAAGCCTGAAAGCCAAGCTACAGGTTAAATCCTCAGACCAGATTGAGAAC	T	319	PASS	-	-	-	-	-	Del	-	D	77634744	77634951	206	42	597.274	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	6	0	0	15	15	20	21	5	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529390628	16	78171079	CA	C	660	PASS	WWOX	CCDS42196.1	r.?	-	-	Del	intronic	D	78171079	78171082	1	42	596.069	-	-	2	1	1	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WWOX|CCDS42196.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	6	11	10	26	21	26	21	11	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529393008	16	86265536	TC	T	869	PASS	-	-	-	-	-	Del	-	D	86265536	86265539	1	72	812.658	-	-	2	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	7	8	9	8	24	20	24	20	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529394405	17	757032	GGCT	G	300	PASS	NXN	CCDS10998.1	r.?	-	-	Del	intronic	D	757032	757036	3	12	269.756	-	-	1	1	1	NXN|CCDS10998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NXN|CCDS10998.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	3	2	5	3	24	7	24	7	5	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529395845	17	4341306	TCTC	T	838	PASS	SPNS3	CCDS11045.1	r.?	-	-	Del	intronic	D	4341306	4341312	3	70	805.054	-	-	1	1	1	SPNS3|CCDS11045.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPNS3|CCDS11045.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	6	9	7	11	18	22	18	22	7	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529401349	17	20748283	GC	G	403	PASS	-	-	-	-	-	Del	-	D	20748283	20748286	1	36	543.124	-	-	2	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	5	5	8	8	25	25	25	25	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529403368	17	27620252	G	GC	569	PASS	NUFIP2	CCDS32600.1	r.?	-	-	Ins	intronic	I	27620252	27620261	1	35	528.675	-	-	8	1	1	NUFIP2|CCDS32600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUFIP2|CCDS32600.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	6	6	9	11	18	11	18	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529405409	17	35424813	TAA	T	660	PASS	-	-	-	-	-	Del	-	D	35424813	35424817	2	40	588.406	-	-	3	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	7	6	9	16	20	16	20	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529405435	17	35509194	GC	G	569	PASS	ACACA	CCDS11317.1	r.?	-	-	Del	intronic	D	35509194	35509198	1	32	533.491	-	-	3	1	1	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACACA|CCDS11317.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	7	3	7	6	21	15	21	15	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529407668	17	42464281	AC	A	749	PASS	ITGA2B	CCDS32665.1	r.?	-	-	Del	intronic	D	42464281	42464285	1	36	698.235	-	-	3	1	1	ITGA2B|CCDS32665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA2B|CCDS32665.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	11	5	12	19	25	19	25	5	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529410338	17	49631625	TATG	T	269	PASS	-	-	-	-	-	Del	-	D	49631625	49631632	3	12	270.96	-	-	2	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	3	2	5	2	20	7	20	7	5	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529413366	17	59885322	TAGTATAACTTTTAAA	T	377	PASS	BRIP1	CCDS11631.1	r.?	-	-	Del	intronic	D	59885322	59885340	15	56	704.858	-	-	1	1	1	BRIP1|CCDS11631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BRIP1|CCDS11631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	7	6	7	6	17	21	17	21	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529416276	17	68583729	G	GT	960	PASS	-	-	-	-	-	Ins	-	I	68583729	68583739	1	80	857.56	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	7	9	9	10	30	26	30	26	9	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529418785	17	76167781	TC	T	540	PASS	SYNGR2	CCDS11753.1	r.?	-	-	Del	intronic	D	76167781	76167787	1	30	488.812	-	-	5	1	1	SYNGR2|CCDS11753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYNGR2|CCDS11753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	5	4	6	10	16	10	16	5	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529421995	18	3585512	AT	A	840	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Del	intronic	D	3585512	3585515	1	60	759.923	-	-	2	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	9	5	9	10	24	24	24	24	9	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529424156	18	11003835	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	11003835	11003842	1	36	537.212	-	-	6	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	5	5	7	5	24	21	24	21	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529424365	18	11816357	A	AC	660	PASS	GNAL	CCDS11851.1	r.?	-	-	Ins	intronic	I	11816357	11816359	1	40	590.933	-	-	1	1	1	GNAL|CCDS11851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GNAL|CCDS11851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	4	7	5	7	14	14	14	17	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529426271	18	20537818	TGCTTCA	T	464	PASS	RBBP8	CCDS11875.1	r.?	-	-	Del	intronic	D	20537818	20537825	6	80	868.57	-	-	1	1	1	RBBP8|CCDS11875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBBP8|CCDS11875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	9	7	9	11	35	28	35	28	9	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529429337	18	31403488	GA	G	720	PASS	-	-	-	-	-	Del	-	D	31403488	31403490	1	48	648.266	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	7	7	11	15	25	15	25	7	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529434115	18	48602713	CAGAT	C	1045	PASS	SMAD4	CCDS11950.1	r.?	-	-	Del	intronic	D	48602713	48602718	4	112	1078.64	-	-	1	1	1	SMAD4|CCDS11950.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMAD4|CCDS11950.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	13	7	13	9	23	21	23	21	13	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529434700	18	50572171	GA	G	720	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	50572171	50572175	1	33	650.675	-	-	3	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	10	2	16	4	42	15	42	15	16	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529435071	18	51535592	G	GA	830	PASS	-	-	-	-	-	Ins	-	I	51535592	51535596	1	72	805.818	-	-	3	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	7	8	8	10	21	30	22	30	8	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529440000	18	67291275	TC	T	1080	PASS	DOK6	CCDS32841.1	r.?	-	-	Del	intronic	D	67291275	67291278	1	100	971.196	-	-	2	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	9	9	10	10	23	23	23	23	10	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529446261	19	8224027	GTTGCAGTGAACTAAGA	G	261	PASS	-	-	-	-	-	Del	-	D	8224027	8224045	16	18	487.784	-	-	1	1	1	-	-	./.	0	0	0	0	4	14	4	14	0	0	./.	1	8	1	8	10	22	10	22	1	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529446565	19	8968243	CATC	CTA	540	PASS	ENSG00000205631	ENST00000380951	r.?	-	-	Complex	intronic	DI	8968244	8968246	3	30	0	-	-	0	1	1	ENSG00000205631|ENST00000380951|r.?|-|-|protein_coding:three_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:1000032:SO:0001627	ENSG00000205631|ENST00000380951|r.?|-|-|protein_coding:three_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	5	4	0	0	17	27	17	27	5	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529452582	19	28336459	GAA	G	478	PASS	-	-	-	-	-	Del	-	D	28336459	28336462	2	30	487.182	-	-	2	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	4	5	5	16	16	16	16	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529453263	19	30645329	CGAT	C	596	PASS	-	-	-	-	-	Del	-	D	30645329	30645338	3	45	644.961	-	-	2	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	4	8	8	10	21	23	21	23	8	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529454560	19	35169573	GTGTGACAGGTGCCGCAAGATAAGCCCGATTTTTCA	G	348	PASS	ZNF302	CCDS46042.1	r.?	-	-	Del	intronic	D	35169573	35169611	35	45	652.185	-	-	1	1	1	ZNF302|CCDS46042.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF302|CCDS46042.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	8	4	3	2	10	12	15	14	8	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529455800	19	38914494	A	AATC	300	PASS	RASGRP4	CCDS46068.1	r.?	-	-	Ins	intronic	I	38914494	38914497	3	12	262.964	-	-	0	1	-	RASGRP4|CCDS46068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RASGRP4|CCDS46068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	4	4	18	16	18	17	4	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529456957	19	43493959	GA	G	538	PASS	PSG1	ENST00000449000	r.?	-	-	Del	intronic	D	43493959	43493962	1	32	531.948	-	-	2	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	7	5	10	28	14	28	14	5	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529458872	19	48645973	TCAC	TG	563	PASS	LIG1	CCDS12711.1	r.?	-	-	Complex	intronic	DI	48645974	48645976	3	56	0	-	-	0	1	1	LIG1|CCDS12711.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	LIG1|CCDS12711.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	7	6	0	0	19	11	19	11	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529467282	2	15274682	TAAA	T	747	PASS	-	-	-	-	-	Del	-	D	15274682	15274687	3	48	754.249	-	-	4	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	11	3	12	4	23	14	23	14	12	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529471408	2	30190024	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	30190024	30190033	1	10	265.762	-	-	8	1	1	-	-	./.	0	0	0	0	11	21	11	22	0	0	./.	1	4	2	6	29	23	30	23	2	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529472031	2	32751017	CA	C	720	PASS	BIRC6	CCDS33175.2	r.?	-	-	Del	intronic	D	32751017	32751021	1	49	646.499	-	-	3	1	1	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	6	6	9	12	18	25	18	25	9	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529474357	2	39543948	TTA	T	540	PASS	MAP4K3	CCDS1803.1	r.?	-	-	Del	intronic	D	39543948	39543951	2	30	484.875	-	-	1	1	1	MAP4K3|CCDS1803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP4K3|CCDS1803.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	4	8	8	22	18	22	18	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529478057	2	52374836	TTATCCAG	T	377	PASS	-	-	-	-	-	Del	-	D	52374836	52374845	7	50	700.374	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	9	4	10	4	24	20	24	20	10	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529478494	2	54053408	CA	C	898	PASS	ASB3	ENST00000406625	r.?	-	-	Del	intronic	D	54053408	54053410	1	72	859.591	-	-	1	1	1	ASB3|ENST00000406625|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASB3|ENST00000406625|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	11	6	13	24	28	24	28	6	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529479328	2	56575765	CT	C	540	PASS	CCDC85A	CCDS46290.1	r.?	-	-	Del	intronic	D	56575765	56575767	1	30	484.875	-	-	1	1	1	CCDC85A|CCDS46290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC85A|CCDS46290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	5	6	8	17	17	17	17	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529481303	2	63825858	AAAGATTAG	A	435	PASS	MDH1	CCDS1874.1	r.?	-	-	Del	intronic	D	63825858	63825873	8	72	807.522	-	-	1	1	1	MDH1|CCDS1874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDH1|CCDS1874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	7	8	7	8	28	21	28	21	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529481560	2	64859730	AC	A	447	PASS	SERTAD2	CCDS33210.1	r.4573delG	c.?	p.?	Del	3'UTR variant	D	64859730	64859734	1	18	484.875	-	-	3	1	1	SERTAD2|CCDS33210.1|r.4573delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SERTAD2|CCDS33210.1|r.4573delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	13	14	13	0	0	./.	1	8	3	11	16	22	16	22	3	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529482635	2	68461432	GCCACTGCACT	G	319	PASS	PPP3R1	CCDS46310.1	r.?	-	-	Del	intronic	D	68461432	68461446	10	42	583.594	-	-	1	1	1	PPP3R1|CCDS46310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP3R1|CCDS46310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	6	5	0	0	18	18	18	18	6	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529483971	2	74442960	T	TC	689	PASS	MTHFD2	CCDS1935.2	r.2724_2725insc	c.?	p.?	Ins	3'UTR variant	I	74442960	74442963	1	40	632.652	-	-	2	1	1	MTHFD2|CCDS1935.2|r.2724_2725insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	MTHFD2|CCDS1935.2|r.2724_2725insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	9	11	9	11	0	0	./.	9	3	15	4	27	14	27	14	15	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529484024	2	74999454	AT	A	629	PASS	-	-	-	-	-	Del	-	D	74999454	74999457	1	40	592.624	-	-	2	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	7	4	10	7	21	24	21	24	10	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529486277	2	83031658	CAAG	C	749	PASS	-	-	-	-	-	Del	-	D	83031658	83031667	3	44	691.945	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	10	7	11	23	26	23	26	7	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529490174	2	100131476	CA	C	597	PASS	-	-	-	-	-	Del	-	D	100131476	100131478	1	35	521.29	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	6	4	7	7	18	23	18	23	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529494625	2	116712299	TTCTC	T	805	PASS	-	-	-	-	-	Del	-	D	116712299	116712304	4	72	861.999	-	-	2	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	5	11	7	12	18	23	18	23	7	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529495377	2	119001274	G	GC	480	PASS	-	-	-	-	-	Ins	-	I	119001274	119001277	1	25	425.581	-	-	2	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	4	4	7	7	22	21	22	21	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529496759	2	123933497	ATTTTTGCATGTGAAACATAT	A	609	PASS	-	-	-	-	-	Del	-	D	123933497	123933522	20	126	1131.37	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	8	13	8	12	24	30	24	31	8	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529497285	2	125608359	GA	G	720	PASS	CNTNAP5	CCDS46401.1	r.?	-	-	Del	intronic	D	125608359	125608365	1	45	646.499	-	-	5	1	1	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP5|CCDS46401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	8	4	14	7	21	16	21	16	14	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529499016	2	131660177	G	GGAAAGAAAAGAAA	319	PASS	ARHGEF4	ENST00000409359	r.?	-	-	Ins	intronic	I	131660177	131660190	13	40	503.52	-	-	0	1	-	ARHGEF4|ENST00000409359|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ARHGEF4|ENST00000409359|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	4	7	4	6	17	18	17	18	4	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529499224	2	132267862	TC	T	325	PASS	-	-	-	-	-	Del	-	D	132267862	132267866	1	20	376.523	-	-	3	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	3	4	6	9	15	15	15	15	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529502095	2	140719591	TCAAA	T	538	PASS	-	-	-	-	-	Del	-	D	140719591	140719599	4	35	536.943	-	-	1	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	4	7	4	27	18	27	18	7	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529507650	2	160099294	TA	T	780	PASS	WDSUB1	CCDS2208.1	r.?	-	-	Del	intronic	D	160099294	160099299	1	56	699.17	-	-	4	1	1	WDSUB1|CCDS2208.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDSUB1|CCDS2208.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	6	7	7	8	20	19	20	19	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529507908	2	160820257	GAGAAATTGAA	G	319	PASS	PLA2R1	CCDS33309.1	r.?	-	-	Del	intronic	D	160820257	160820269	10	40	584.798	-	-	1	1	1	PLA2R1|CCDS33309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLA2R1|CCDS33309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	7	4	8	19	23	19	23	4	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529508485	2	163492998	CT	C	1080	PASS	KCNH7	CCDS2219.1	r.?	-	-	Del	intronic	D	163492998	163493001	1	99	969.147	-	-	2	1	1	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH7|CCDS2219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	8	10	10	10	19	25	19	25	10	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529508597	2	163949117	ATGT	A	989	PASS	-	-	-	-	-	Del	-	D	163949117	163949124	3	78	915.874	-	-	2	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	5	12	6	16	19	32	19	32	6	16	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529508612	2	164062776	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	164062776	164062778	1	42	586.002	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	5	11	9	28	21	28	21	11	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529512601	2	176642138	GAGACTGGACAA	G	464	PASS	-	-	-	-	-	Del	-	D	176642138	176642150	11	80	858.989	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	9	7	9	9	23	22	23	22	9	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529513244	2	178804716	A	AT	540	PASS	PDE11A	CCDS42786.1	r.?	-	-	Ins	intronic	I	178804716	178804725	1	24	477.048	-	-	8	1	1	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	18	0	0	./.	7	2	9	6	18	28	18	28	9	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529517646	2	194564128	CA	C	420	PASS	-	-	-	-	-	Del	-	D	194564128	194564137	1	20	372.91	-	-	8	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	3	4	4	6	17	17	17	17	4	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529517847	2	195250912	AAGC	A	389	PASS	-	-	-	-	-	Del	-	D	195250912	195250919	3	20	375.318	-	-	2	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	5	7	19	18	19	18	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529520429	2	203541629	TA	T	420	PASS	FAM117B	CCDS33362.1	r.?	-	-	Del	intronic	D	203541629	203541634	1	18	372.308	-	-	4	1	1	FAM117B|CCDS33362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM117B|CCDS33362.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	2	5	4	6	16	14	16	14	4	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529522423	2	210078382	ATCTATCCTTTCCC	A	377	PASS	-	-	-	-	-	Del	-	D	210078382	210078396	13	56	699.772	-	-	1	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	6	7	9	8	22	20	22	20	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529524608	2	216972932	ATGTATT	A	377	PASS	XRCC5	CCDS2402.1	r.?	-	-	Del	intronic	D	216972932	216972940	6	56	698.568	-	-	1	1	1	XRCC5|CCDS2402.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	XRCC5|CCDS2402.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	6	7	7	8	19	26	19	26	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529527843	2	227960897	TA	T	809	PASS	COL4A4	CCDS42828.1	r.?	-	-	Del	intronic	D	227960897	227960899	1	60	754.249	-	-	1	1	1	COL4A4|CCDS42828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A4|CCDS42828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	9	5	11	8	23	20	23	20	11	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529528401	2	229447359	T	TTA	540	PASS	-	-	-	-	-	Ins	-	I	229447359	229447373	2	24	474.038	-	-	6	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	7	2	9	4	28	19	28	19	9	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529529308	2	232570892	CA	C	300	PASS	PTMA	CCDS46541.1	r.?	-	-	Del	upstream	D	232570892	232570894	1	12	269.375	-	-	1	1	1	PTMA|CCDS46541.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PTMA|CCDS46541.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	4	4	10	16	10	16	4	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529530541	2	236362394	GC	G	960	PASS	-	-	-	-	-	Del	-	D	236362394	236362396	1	65	860.193	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	12	4	14	5	32	15	32	15	14	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529531076	2	238440818	AC	A	600	PASS	MLPH	CCDS2518.1	r.?	-	-	Del	intronic	D	238440818	238440820	1	35	535.739	-	-	1	1	1	MLPH|CCDS2518.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLPH|CCDS2518.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	6	4	7	6	19	14	19	14	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529533602	20	3752067	TA	T	418	PASS	C20orf27	CCDS33436.1	r.?	-	-	Del	upstream	D	3752067	3752070	1	25	433.909	-	-	2	1	1	C20orf27|CCDS33436.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C20orf27|CCDS33436.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	4	4	9	6	17	15	17	15	9	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529536349	20	12704263	CA	C	540	PASS	-	-	-	-	-	Del	-	D	12704263	12704265	1	30	490.179	-	-	1	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	5	4	5	20	13	20	13	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529536835	20	14403162	A	AT	360	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	14403162	14403172	1	15	322.572	-	-	9	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	15	14	0	0	./.	2	4	2	4	29	36	30	37	2	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529537535	20	16952777	TA	T	569	PASS	-	-	-	-	-	Del	-	D	16952777	16952786	1	32	539.827	-	-	8	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	7	4	8	14	25	14	25	4	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529539370	20	24377135	ATTATAC	A	485	PASS	-	-	-	-	-	Del	-	D	24377135	24377144	6	99	980.358	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	8	10	9	12	22	21	23	21	10	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529542680	20	33777550	CT	C	600	PASS	-	-	-	-	-	Del	-	D	33777550	33777553	1	35	541.633	-	-	2	1	1	-	-	./.	0	0	0	0	17	4	17	4	0	0	./.	6	4	9	5	24	15	24	15	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529542707	20	33857960	TG	T	480	PASS	MMP24	CCDS46593.1	r.?	-	-	Del	intronic	D	33857960	33857964	1	25	433.307	-	-	3	1	1	MMP24|CCDS46593.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MMP24|CCDS46593.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	4	4	6	4	13	12	13	12	6	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529549615	20	58773885	CAATTTT	C	435	PASS	-	-	-	-	-	Del	-	D	58773885	58773893	6	70	812.751	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	9	6	12	9	20	17	20	17	12	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529549700	20	59170650	ATAAA	AAAT	360	PASS	ENSG00000237240	ENST00000456299	r.?	-	-	Complex	intronic	DI	59170651	59170654	4	16	0	-	-	0	1	1	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ENSG00000237240|ENST00000456299|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	3	0	0	24	21	24	21	3	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529554738	21	15571595	GAAA	G	896	PASS	LIPI	CCDS13564.1	r.?	-	-	Del	intronic	D	15571595	15571601	3	88	925.301	-	-	5	1	1	LIPI|CCDS13564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIPI|CCDS13564.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	10	7	11	9	37	21	37	21	11	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529555067	21	16720025	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	16720025	16720032	1	64	753.477	-	-	6	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	7	7	11	11	29	21	29	21	11	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529561255	21	33651565	TCCTAAGGATTATTCA	T	324	PASS	C21orf45	CCDS13611.1	r.?	-	-	Del	upstream	D	33651565	33651583	15	49	653.579	-	-	1	1	1	C21orf45|CCDS13611.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C21orf45|CCDS13611.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	17	5	17	0	0	./.	6	6	7	5	18	16	18	17	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529562038	21	35792866	T	TA	300	PASS	ENSG00000243627	ENST00000480922	r.?	-	-	Ins	upstream	I	35792866	35792875	1	12	268.712	-	-	8	1	-	ENSG00000243627|ENST00000480922|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000243627|ENST00000450895|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	3	2	6	7	16	22	16	22	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529563069	21	39003085	GAGAAC	G	675	PASS	KCNJ6	CCDS42927.1	r.?	-	-	Del	intronic	D	39003085	39003092	5	108	1028.81	-	-	1	1	1	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	16	5	16	0	0	./.	8	11	10	15	21	29	21	29	10	15	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529569430	22	26539734	GCTACT	G	658	PASS	-	-	-	-	-	Del	-	D	26539734	26539741	5	45	644.705	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	8	6	9	15	19	15	19	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529571938	22	35091830	AG	A	420	PASS	-	-	-	-	-	Del	-	D	35091830	35091832	1	20	383.102	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	4	4	5	14	18	14	18	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529575053	22	45866400	GCCCC	G	298	PASS	-	-	-	-	-	Del	-	D	45866400	45866407	4	16	328.373	-	-	6	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	3	3	3	8	13	8	13	3	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529579470	3	8631987	C	CGTG	780	PASS	-	-	-	-	-	Ins	-	I	8631987	8631988	3	56	677.595	-	-	0	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	7	7	8	28	25	28	26	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529579766	3	9572775	TTA	T	480	PASS	LHFPL4	CCDS33691.1	r.?	-	-	Del	intronic	D	9572775	9572779	2	24	431.802	-	-	1	1	1	LHFPL4|CCDS33691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LHFPL4|CCDS33691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	3	7	3	18	16	18	16	7	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529581592	3	15867573	CA	C	417	PASS	ANKRD28	CCDS46769.1	r.?	-	-	Del	intronic	D	15867573	15867575	1	20	332.672	-	-	1	1	1	ANKRD28|CCDS46769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKRD28|CCDS46769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	4	3	5	4	24	17	24	17	5	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529582649	3	20181651	GTT	G	720	PASS	KAT2B	CCDS2634.1	r.?	-	-	Del	intronic	D	20181651	20181654	2	48	642.886	-	-	2	1	1	KAT2B|CCDS2634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KAT2B|CCDS2634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	5	7	5	9	17	30	17	30	5	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529584146	3	25089521	GC	G	360	PASS	-	-	-	-	-	Del	-	D	25089521	25089524	1	15	322.647	-	-	2	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	2	6	3	18	15	18	15	6	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529586307	3	32766720	G	GT	660	PASS	CNOT10	CCDS2655.1	r.?	-	-	Ins	intronic	I	32766720	32766728	1	42	585.901	-	-	7	1	1	CNOT10|CCDS2655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNOT10|CCDS2655.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	14	20	15	0	0	./.	5	6	9	7	23	30	23	30	9	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529587456	3	36655463	TG	T	840	PASS	-	-	-	-	-	Del	-	D	36655463	36655466	1	64	755.051	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	7	7	10	8	26	21	26	21	10	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529590575	3	48792692	GTGC	G	598	PASS	PRKAR2A	CCDS2778.1	r.?	-	-	Del	intronic	D	48792692	48792698	3	36	586.503	-	-	1	1	1	PRKAR2A|CCDS2778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKAR2A|CCDS2778.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	3	8	4	8	23	19	23	19	4	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529592145	3	55166450	CTGAAAA	C	435	PASS	-	-	-	-	-	Del	-	D	55166450	55166459	6	70	809.026	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	9	6	12	6	28	19	28	19	12	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529593150	3	58140227	GC	G	689	PASS	FLNB	CCDS2885.1	r.?	-	-	Del	intronic	D	58140227	58140229	1	49	632.651	-	-	1	1	1	FLNB|CCDS2885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLNB|CCDS2885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	17	3	17	0	0	./.	6	6	7	7	17	27	17	27	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529593357	3	58604803	CTG	C	420	PASS	FAM107A	ENST00000474531	r.?	-	-	Del	intronic	D	58604803	58604806	2	18	376.622	-	-	1	1	1	FAM107A|ENST00000474531|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM107A|ENST00000474531|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	2	7	11	16	11	16	2	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529597682	3	74057994	GTTCCAGCTCCTT	G	290	PASS	-	-	-	-	-	Del	-	D	74057994	74058009	12	35	539.15	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	6	4	7	23	15	23	15	4	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529599393	3	76612998	TAAACAGTACTA	T	319	PASS	ROBO2	ENST00000487694	r.?	-	-	Del	intronic	D	76612998	76613011	11	40	592.523	-	-	1	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	7	4	8	5	19	24	19	24	8	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529600227	3	79533487	G	GA	480	PASS	ROBO1	ENST00000464233	r.?	-	-	Ins	intronic	I	79533487	79533493	1	25	381.229	-	-	5	1	1	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO1|ENST00000464233|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	4	8	7	22	24	22	24	8	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529602942	3	88928360	TTTTA	T	956	PASS	-	-	-	-	-	Del	-	D	88928360	88928369	4	99	969.748	-	-	2	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	10	8	13	13	29	29	29	29	13	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529603313	3	94086526	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	94086526	94086536	1	6	262.651	-	-	9	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	0	5	1	4	26	31	26	31	1	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529605242	3	100839670	GGGTTTGCAGATACA	G	336	PASS	-	-	-	-	-	Del	-	D	100839670	100839685	14	49	644.09	-	-	1	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	6	6	6	6	13	18	13	18	6	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529605304	3	101036127	TA	T	600	PASS	IMPG2	CCDS2940.1	r.?	-	-	Del	intronic	D	101036127	101036129	1	32	537.946	-	-	1	1	1	IMPG2|CCDS2940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMPG2|CCDS2940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	7	3	9	5	31	18	31	18	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529607096	3	107138580	AG	A	900	PASS	-	-	-	-	-	Del	-	D	107138580	107138584	1	70	809.628	-	-	3	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	9	6	16	6	38	22	38	22	16	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529609494	3	115242334	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	115242334	115242344	1	12	264.458	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	2	3	22	21	22	21	2	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529609562	3	115545716	G	GA	689	PASS	LSAMP	CCDS2982.1	r.?	-	-	Ins	intronic	I	115545716	115545725	1	49	639.876	-	-	8	1	1	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LSAMP|CCDS2982.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	14	11	0	0	./.	6	6	8	10	22	28	23	28	8	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529610484	3	118619662	G	GA	300	PASS	IGSF11	CCDS46891.1	r.3306_3307insu	c.?	p.?	Ins	3'UTR variant	I	118619662	118619672	1	10	263.253	-	-	9	1	1	IGSF11|CCDS46891.1|r.3306_3307insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	IGSF11|CCDS46891.1|r.3306_3307insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	4	1	40	27	40	28	4	1	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529611787	3	123256260	TA	T	360	PASS	PTPLB	CCDS46895.1	r.?	-	-	Del	intronic	D	123256260	123256267	1	15	322.647	-	-	6	1	1	PTPLB|CCDS46895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPLB|CCDS46895.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	4	4	7	13	19	13	19	4	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529611998	3	124231093	GCTCATGACTGTCGCTGGCGCAATA	G	406	PASS	KALRN	CCDS3027.1	r.?	-	-	Del	intronic	D	124231093	124231119	24	64	747.826	-	-	1	1	1	KALRN|CCDS3027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KALRN|CCDS3027.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	7	7	6	6	28	13	29	14	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529613146	3	128267848	GGAC	G	327	PASS	-	-	-	-	-	Del	-	D	128267848	128267852	3	20	376.622	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	4	4	5	17	17	17	17	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529616031	3	138839445	CTGA	C	656	PASS	MRPS22	CCDS3107.1	r.?	-	-	Del	intronic	D	138839445	138839449	3	56	682.412	-	-	1	1	1	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MRPS22|CCDS3107.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	6	10	7	20	26	20	26	10	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529623166	3	163967586	ATGGG	A	598	PASS	-	-	-	-	-	Del	-	D	163967586	163967593	4	40	593.125	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	7	4	7	4	23	16	23	16	7	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529623762	3	166063591	TA	T	720	PASS	-	-	-	-	-	Del	-	D	166063591	166063593	1	48	647.1	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	5	7	6	7	24	25	24	25	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529628662	3	184419688	GACA	G	689	PASS	-	-	-	-	-	Del	-	D	184419688	184419696	3	48	647.703	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	7	7	10	22	21	22	21	7	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529630770	3	191012010	C	CA	420	PASS	UTS2D	CCDS3300.1	r.?	-	-	Ins	intronic	I	191012010	191012012	1	20	373.01	-	-	1	1	1	UTS2D|CCDS3300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	UTS2D|CCDS3300.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	4	3	10	8	25	19	25	19	10	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529631251	3	192609722	GC	G	480	PASS	C3orf59	CCDS3302.2	r.?	-	-	Del	intronic	D	192609722	192609725	1	24	431.802	-	-	2	1	1	C3orf59|CCDS3302.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf59|CCDS3302.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	5	3	7	5	24	16	24	16	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529632685	3	196872471	CT	C	600	PASS	DLG1	CCDS3327.1	r.?	-	-	Del	intronic	D	196872471	196872476	1	35	536.742	-	-	4	1	1	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	6	5	7	22	18	22	18	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529633155	4	468282	A	AT	960	PASS	ABCA11P	ENST00000338977	r.?	-	-	Ins	intronic	I	468282	468287	1	81	852.741	-	-	4	1	1	ABCA11P|ENST00000338977|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ABCA11P|ENST00000338977|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	19	0	0	./.	8	8	12	11	21	21	21	21	12	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529633331	4	1164628	CA	C	420	PASS	SPON2	CCDS3347.1	r.?	-	-	Del	intronic	D	1164628	1164630	1	14	376.95	-	-	1	1	1	SPON2|CCDS3347.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPON2|CCDS3347.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	6	1	7	2	17	13	17	13	7	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529641110	4	26784975	TA	T	720	PASS	-	-	-	-	-	Del	-	D	26784975	26784978	1	45	644.824	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	8	8	10	24	29	24	29	8	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529641719	4	28444429	GAAGGACTTA	G	261	PASS	-	-	-	-	-	Del	-	D	28444429	28444440	9	28	485.424	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	3	6	4	17	16	17	16	6	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529642214	4	29776798	TA	T	780	PASS	-	-	-	-	-	Del	-	D	29776798	29776804	1	56	700.566	-	-	5	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	6	10	7	21	14	21	14	10	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529644087	4	36343308	TA	T	660	PASS	DTHD1	CCDS47039.1	r.?	-	-	Del	intronic	D	36343308	36343311	1	42	593.296	-	-	2	1	1	DTHD1|CCDS47039.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DTHD1|CCDS47039.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	6	5	10	24	24	24	24	5	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529649942	4	56480757	AT	A	540	PASS	NMU	CCDS3501.1	r.?	-	-	Del	intronic	D	56480757	56480764	1	28	485.424	-	-	6	1	1	NMU|CCDS3501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NMU|CCDS3501.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	3	6	4	8	18	14	18	14	4	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529651874	4	62066498	AC	A	600	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	upstream	D	62066498	62066501	1	32	532.135	-	-	2	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	LPHN3|ENST00000512091|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	5	8	5	0	0	./.	7	3	9	5	18	21	18	21	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529657299	4	78762348	AT	A	1138	PASS	-	-	-	-	-	Del	-	D	78762348	78762350	1	117	1078.12	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	12	8	17	8	38	25	38	25	17	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529657520	4	79447781	CT	C	660	PASS	FRAS1	ENST00000264895	r.11336delU	c.10896delT	p.L3633fs*12	Del	frameshift	D	79447781	79447785	1	40	592.694	-	-	3	1	1	FRAS1|ENST00000264895|r.11336delU|c.10896delT|p.L3633fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FRAS1|ENST00000264895|r.11336delU|c.10896delT|p.L3633fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	10	9	10	0	0	./.	4	7	6	10	12	22	12	22	6	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529658440	4	83217765	GAAAATTAGTCAGCTAT	G	435	PASS	-	-	-	-	-	Del	-	D	83217765	83217783	16	52	809.04	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	12	3	13	23	27	23	27	3	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529660267	4	89280961	ACTT	A	298	PASS	-	-	-	-	-	Del	-	D	89280961	89280967	3	15	323.616	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	8	3	22	14	22	14	8	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529660310	4	89596955	ATG	A	300	PASS	HERC3	CCDS34028.1	r.?	-	-	Del	intronic	D	89596955	89596971	2	12	269.68	-	-	7	1	-	HERC3|CCDS34028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HERC3|CCDS34028.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	2	3	28	21	28	21	2	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529661869	4	95560964	GA	G	540	PASS	PDLIM5	CCDS3641.1	r.?	-	-	Del	intronic	D	95560964	95560966	1	30	484.822	-	-	1	1	1	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	4	5	5	5	20	17	20	17	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529663118	4	99613755	AC	A	960	PASS	-	-	-	-	-	Del	-	D	99613755	99613757	1	80	850.935	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	7	9	10	10	27	21	27	21	10	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529663413	4	100378543	CCATGT	C	687	PASS	-	-	-	-	-	Del	-	D	100378543	100378551	5	56	694.545	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	6	7	9	8	19	20	19	20	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529664281	4	104231648	C	CT	477	PASS	-	-	-	-	-	Ins	-	I	104231648	104231657	1	21	426.672	-	-	8	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	6	3	9	15	27	15	27	3	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529664726	4	106052034	T	TTGTA	358	PASS	-	-	-	-	-	Ins	-	I	106052034	106052039	4	20	357.684	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	16	0	0	./.	4	3	5	4	19	14	19	14	5	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529666478	4	112420948	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	112420948	112420957	1	40	585.469	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	7	6	8	24	30	24	31	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529667387	4	116030406	TGGCCAAGCTAACTTTCAACTTCTGTGTAGTTATAGTTGACGATGCATTCCATTAAGGACTTTTTAAAAGGAGGCTAAATATTTGAAATAAATCACAACATAAGTTCAATTGATGGTG	T	377	PASS	NDST4	CCDS3706.1	r.?	-	-	Del	intronic	D	116030406	116030525	117	54	700.566	-	-	1	1	1	NDST4|CCDS3706.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NDST4|CCDS3706.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	8	5	0	0	14	9	22	14	8	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529671357	4	128961199	ATGGGAGT	A	493	PASS	C4orf29	ENST00000388795	r.?	-	-	Del	downstream	D	128961199	128961207	7	88	916.31	-	-	1	1	1	C4orf29|ENST00000388795|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	C4orf29|ENST00000388795|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	9	10	9	10	0	0	./.	10	7	10	8	31	14	31	14	10	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529676754	4	146702176	GT	G	300	PASS	ZNF827	CCDS34072.1	r.?	-	-	Del	intronic	D	146702176	146702178	1	6	269.078	-	-	1	1	1	ZNF827|CCDS34072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF827|CCDS34072.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	0	5	2	5	12	13	12	13	2	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529677732	4	150654953	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	150654953	150654959	1	50	693.341	-	-	5	1	1	-	-	./.	0	0	0	0	12	12	13	12	0	0	./.	4	9	7	12	23	35	23	35	7	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529681598	4	163059807	AT	A	540	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	163059807	163059809	1	30	483.618	-	-	1	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	4	5	6	10	26	24	26	24	6	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529684641	4	171851859	AT	A	600	PASS	-	-	-	-	-	Del	-	D	171851859	171851863	1	35	539.36	-	-	3	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	4	9	5	27	21	27	21	9	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529685428	4	174550025	TG	T	468	PASS	-	-	-	-	-	Del	-	D	174550025	174550027	1	48	641.814	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	7	5	7	6	18	15	18	15	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529688359	4	182623102	TC	T	509	PASS	-	-	-	-	-	Del	-	D	182623102	182623105	1	28	484.822	-	-	2	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	6	3	8	5	22	18	22	18	8	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529690484	4	188454188	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	188454188	188454198	1	10	261.853	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	1	4	1	21	28	21	28	4	1	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529691035	4	189820298	AT	A	720	PASS	-	-	-	-	-	Del	-	D	189820298	189820306	1	45	646.028	-	-	7	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	8	6	8	17	30	17	30	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529698181	5	18404387	GT	G	509	PASS	-	-	-	-	-	Del	-	D	18404387	18404390	1	30	480.259	-	-	2	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	5	5	7	15	18	15	18	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529698328	5	18738989	TTGAAGGTGTAGCA	T	464	PASS	-	-	-	-	-	Del	-	D	18738989	18739006	13	81	863.293	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	8	8	8	8	27	27	27	27	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529700442	5	25044220	AT	A	809	PASS	-	-	-	-	-	Del	-	D	25044220	25044222	1	60	752.823	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	9	5	10	6	27	22	27	22	10	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529704497	5	36859632	G	GT	1020	PASS	-	-	-	-	-	Ins	-	I	36859632	36859639	1	78	907.691	-	-	6	1	1	-	-	./.	0	0	0	0	17	8	17	9	0	0	./.	12	5	15	8	35	20	36	20	15	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529704944	5	38330031	AAAGAGC	A	493	PASS	EGFLAM	CCDS3924.1	r.?	-	-	Del	intronic	D	38330031	38330040	6	88	916.12	-	-	1	1	1	EGFLAM|CCDS3924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EGFLAM|CCDS3924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	10	7	11	8	30	19	30	19	11	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529705456	5	40029766	A	AT	840	PASS	-	-	-	-	-	Ins	-	I	40029766	40029774	1	64	748.006	-	-	7	1	1	-	-	./.	0	0	0	0	19	21	19	22	0	0	./.	7	7	11	12	31	43	33	44	11	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529706766	5	45592215	GTCTATT	G	290	PASS	HCN1	CCDS3952.1	r.?	-	-	Del	intronic	D	45592215	45592225	6	36	539.709	-	-	1	1	1	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HCN1|CCDS3952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	5	5	6	5	19	17	19	17	6	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529707485	5	51691469	TC	T	960	PASS	-	-	-	-	-	Del	-	D	51691469	51691473	1	80	863.293	-	-	3	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	9	7	10	10	15	32	15	32	10	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529709494	5	57539650	TACTA	T	600	PASS	-	-	-	-	-	Del	-	D	57539650	57539659	4	27	540.311	-	-	2	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	8	2	11	3	23	13	23	13	11	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529715739	5	80649114	AAAAAATAGGG	AAAAATAGGG	507	PASS	ACOT12	CCDS4055.1	r.?	-	-	Complex	intronic	DI	80649115	80649124	10	35	0	-	-	0	1	1	ACOT12|CCDS4055.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ACOT12|CCDS4055.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	6	4	0	0	19	20	19	20	6	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529716158	5	82441726	TATGATA	T	348	PASS	XRCC4	CCDS4058.1	r.?	-	-	Del	intronic	D	82441726	82441733	6	48	616.464	-	-	1	1	1	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	5	7	8	8	22	20	22	20	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529716788	5	84526080	TGTC	T	1049	PASS	-	-	-	-	-	Del	-	D	84526080	84526086	3	96	972.559	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	11	7	14	9	41	26	41	26	14	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529717153	5	85529878	TA	T	720	PASS	-	-	-	-	-	Del	-	D	85529878	85529882	1	45	648.373	-	-	3	1	1	-	-	./.	0	0	0	0	4	18	4	18	0	0	./.	4	8	6	10	16	19	16	19	6	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529717354	5	86193939	TG	T	1200	PASS	-	-	-	-	-	Del	-	D	86193939	86193941	1	117	1080.62	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	8	12	11	16	24	34	24	34	11	16	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529717788	5	87954953	ATCTT	A	809	PASS	-	-	-	-	-	Del	-	D	87954953	87954959	4	48	756.435	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	11	5	12	20	36	20	36	5	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529717801	5	88016310	GCAGCCTTTTACAATGAGAAACA	G	377	PASS	MEF2C	CCDS47245.1	r.3929_3950del22	c.?	p.?	Del	3'UTR variant	D	88016310	88016335	22	56	699.996	-	-	1	1	1	MEF2C|CCDS47245.1|r.3929_3950del22|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MEF2C|CCDS47245.1|r.3929_3950del22|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	9	10	9	0	0	./.	6	7	3	6	24	15	27	16	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529718048	5	89248311	AC	A	660	PASS	-	-	-	-	-	Del	-	D	89248311	89248313	1	42	593.138	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	5	6	9	6	17	23	17	23	9	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529718960	5	93618917	TGAACTTC	T	377	PASS	C5orf36	ENST00000513200	r.?	-	-	Del	intronic	D	93618917	93618925	7	44	697.587	-	-	1	1	1	C5orf36|ENST00000513200|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf36|ENST00000513200|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	10	4	11	16	26	16	26	4	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529723570	5	111109379	AAGGTTTGAGATC	A	290	PASS	C5orf13	CCDS47255.1	r.?	-	-	Del	intronic	D	111109379	111109393	12	36	540.311	-	-	1	1	1	C5orf13|CCDS47255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C5orf13|CCDS47255.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	5	5	5	5	19	28	19	28	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529725516	5	117789183	T	TA	780	PASS	ENSG00000232769	ENST00000428465	r.?	-	-	Ins	intronic	I	117789183	117789193	1	50	690.965	-	-	9	1	1	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	14	26	14	0	0	./.	9	4	12	6	37	20	37	20	12	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529727977	5	126795968	CATG	C	809	PASS	MEGF10	CCDS4142.1	r.6649_6651delAUG	c.?	p.?	Del	3'UTR variant	D	126795968	126795974	3	55	755.833	-	-	1	1	1	MEGF10|CCDS4142.1|r.6649_6651delAUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MEGF10|CCDS4142.1|r.6649_6651delAUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	9	18	9	0	0	./.	4	10	6	10	27	25	27	25	6	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529735892	5	157304974	A	AC	657	PASS	-	-	-	-	-	Ins	-	I	157304974	157304977	1	40	585.311	-	-	2	1	1	-	-	./.	0	0	0	0	11	10	12	10	0	0	./.	4	7	5	8	17	23	18	23	5	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529737958	5	164971964	ATC	A	1320	PASS	-	-	-	-	-	Del	-	D	164971964	164971970	2	140	1180.25	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	9	13	11	14	27	26	27	26	11	14	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529741307	5	176768995	ACCT	A	838	PASS	LMAN2	CCDS4417.1	r.?	-	-	Del	intronic	D	176768995	176768999	3	70	810.466	-	-	1	1	1	LMAN2|CCDS4417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMAN2|CCDS4417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	6	9	11	11	25	31	25	31	11	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529744665	6	6255388	TATGGACATTGCCG	T	406	PASS	F13A1	CCDS4496.1	r.?	-	-	Del	intronic	D	6255388	6255402	13	48	755.346	-	-	1	1	1	F13A1|CCDS4496.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	F13A1|CCDS4496.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	11	4	12	16	26	16	26	4	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529745686	6	8853571	TC	T	569	PASS	-	-	-	-	-	Del	-	D	8853571	8853574	1	35	540.823	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	6	5	7	12	19	12	19	5	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529748034	6	16525157	CCTGTAATCCCAG	C	319	PASS	ATXN1	CCDS34342.1	r.?	-	-	Del	intronic	D	16525157	16525172	12	40	594.905	-	-	1	1	1	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATXN1|CCDS34342.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	7	6	7	25	15	25	15	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529753077	6	30782222	GT	G	660	PASS	-	-	-	-	-	Del	-	D	30782222	30782224	1	40	593.701	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	7	6	9	16	24	16	24	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529757904	6	44891472	ACTGG	A	929	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Del	intronic	D	44891472	44891480	4	80	865.317	-	-	1	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	9	7	11	11	25	21	25	21	11	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529758248	6	46309386	A	AT	460	PASS	RCAN2	ENST00000371374	r.?	-	-	Ins	intronic	I	46309386	46309388	1	30	478.312	-	-	1	1	1	RCAN2|ENST00000371374|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RCAN2|ENST00000371374|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	5	4	6	6	27	17	27	17	6	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529759134	6	49383744	ATGAGAAAAATCAT	A	377	PASS	-	-	-	-	-	Del	-	D	49383744	49383758	13	54	700.06	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	8	5	8	5	27	27	27	27	8	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529760809	6	55072787	TA	T	569	PASS	HCRTR2	CCDS4956.1	r.?	-	-	Del	intronic	D	55072787	55072789	1	32	540.221	-	-	1	1	1	HCRTR2|CCDS4956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HCRTR2|CCDS4956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	7	6	8	26	25	26	25	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529765776	6	71734365	CT	C	420	PASS	-	-	-	-	-	Del	-	D	71734365	71734371	1	20	378.576	-	-	5	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	3	4	3	6	24	24	24	24	3	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529766219	6	73207355	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	73207355	73207361	1	35	533.598	-	-	5	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	6	7	9	27	31	27	31	7	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529767721	6	79550649	TAATAA	T	834	PASS	-	-	-	-	-	Del	-	D	79550649	79550660	5	88	919.399	-	-	2	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	7	10	11	11	17	21	17	21	11	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529768762	6	85390348	GTAT	G	687	PASS	-	-	-	-	-	Del	-	D	85390348	85390355	3	54	701.866	-	-	2	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	8	5	8	5	13	7	13	7	8	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529773910	6	108453680	TTTTG	T	629	PASS	OSTM1	ENST00000440575	r.?	-	-	Del	intronic	D	108453680	108453696	4	42	594.905	-	-	3	1	1	OSTM1|ENST00000440575|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OSTM1|ENST00000440575|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	5	6	7	6	16	10	16	10	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529775217	6	114495360	GC	G	600	PASS	-	-	-	-	-	Del	-	D	114495360	114495362	1	36	540.221	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	5	7	6	10	7	10	7	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529775709	6	116824455	TG	T	282	PASS	BET3L	CCDS47468.1	r.?	-	-	Del	intronic	D	116824455	116824458	1	48	647.181	-	-	2	1	1	BET3L|CCDS47468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BET3L|CCDS47468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	5	7	12	12	18	13	18	13	12	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529776502	6	120378368	GACCTAATATTTAAT	G	464	PASS	-	-	-	-	-	Del	-	D	120378368	120378383	14	80	865.317	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	9	7	10	7	15	8	15	8	10	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529779833	6	136873601	TTGATTCTTAAAATGTCTTCC	T	261	PASS	MAP3K5	CCDS5179.1	r.?	-	-	Del	downstream	D	136873601	136873623	20	30	483.128	-	-	1	1	1	MAP3K5|CCDS5179.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	MAP7|CCDS5178.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	8	12	8	0	0	./.	5	4	5	5	9	5	9	5	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529782848	6	152258341	ATCTAAAATAAATTCT	A	319	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152258341	152258359	15	42	587.078	-	-	1	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	5	6	6	6	10	12	10	12	6	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529785121	6	161701607	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	161701607	161701614	1	15	320.881	-	-	6	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	4	5	8	12	21	12	21	5	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529788342	7	3575623	GT	G	418	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3575623	3575629	1	24	427.583	-	-	5	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	3	11	9	23	22	23	22	11	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529791383	7	12623688	GGATCTGTGTTTGTGTTATTAAC	G	348	PASS	SCIN	CCDS47545.1	r.?	-	-	Del	intronic	D	12623688	12623711	22	48	648.6	-	-	1	1	1	SCIN|CCDS47545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCIN|CCDS47545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	5	7	5	6	18	19	18	21	5	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529792138	7	15038840	C	CA	598	PASS	-	-	-	-	-	Ins	-	I	15038840	15038850	1	40	568.661	-	-	9	1	1	-	-	./.	0	0	0	0	11	27	11	27	0	0	./.	4	7	9	8	21	35	21	35	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529792873	7	17300903	GC	G	840	PASS	-	-	-	-	-	Del	-	D	17300903	17300906	1	60	752.485	-	-	2	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	9	5	12	8	27	21	27	21	12	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529796321	7	29003244	GT	G	1260	PASS	-	-	-	-	-	Del	-	D	29003244	29003246	1	130	1135.05	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	9	12	12	15	29	28	29	28	12	15	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529797905	7	34424746	CAAAG	C	687	PASS	-	-	-	-	-	Del	-	D	34424746	34424755	4	56	702.65	-	-	2	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	6	7	8	8	22	25	22	25	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529801585	7	46987480	GATATTTCCA	G	406	PASS	-	-	-	-	-	Del	-	D	46987480	46987492	9	63	756.699	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	6	8	7	8	27	25	27	25	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529803537	7	53650696	GT	G	840	PASS	-	-	-	-	-	Del	-	D	53650696	53650705	1	63	756.699	-	-	8	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	6	8	11	10	28	25	28	25	11	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529809726	7	72912530	TCCA	T	538	PASS	BAZ1B	CCDS5549.1	r.?	-	-	Del	intronic	D	72912530	72912536	3	36	539.296	-	-	1	1	1	BAZ1B|CCDS5549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAZ1B|CCDS5549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	5	5	7	7	22	25	22	25	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529810859	7	77023250	CA	C	364	PASS	PION	CCDS34672.2	r.?	-	-	Del	intronic	D	77023250	77023254	1	21	411.93	-	-	3	1	1	PION|CCDS34672.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PION|CCDS34672.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	2	6	7	9	17	21	17	21	7	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529815411	7	92673690	GA	G	600	PASS	-	-	-	-	-	Del	-	D	92673690	92673694	1	32	540.5	-	-	3	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	7	3	15	22	29	22	29	3	15	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529815452	7	92747911	CTGAG	C	718	PASS	SAMD9	CCDS34680.1	r.?	-	-	Del	upstream	D	92747911	92747920	4	54	700.241	-	-	2	1	1	SAMD9|CCDS34680.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SAMD9|CCDS34680.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	10	15	10	0	0	./.	8	5	11	6	21	27	21	27	11	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529822104	7	116580717	AT	A	300	PASS	-	-	-	-	-	Del	-	D	116580717	116580727	1	10	267.24	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	4	3	15	13	15	13	4	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529823551	7	122559791	GAAACCTCATTAACTGAA	G	348	PASS	-	-	-	-	-	Del	-	D	122559791	122559810	17	49	648.6	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	6	6	7	8	24	18	24	18	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529825893	7	129935409	AC	A	480	PASS	CPA4	CCDS5818.1	r.?	-	-	Del	intronic	D	129935409	129935411	1	24	432.4	-	-	1	1	1	CPA4|CCDS5818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPA4|CCDS5818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	3	5	4	9	12	22	12	22	4	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529828420	7	138087283	CA	C	360	PASS	-	-	-	-	-	Del	-	D	138087283	138087285	1	12	324.3	-	-	1	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	1	5	1	9	5	23	5	23	1	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529830060	7	144225430	GC	G	840	PASS	TPK1	CCDS5888.1	r.?	-	-	Del	intronic	D	144225430	144225432	1	55	756.699	-	-	1	1	1	TPK1|CCDS5888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPK1|CCDS5888.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	10	4	13	4	22	16	22	16	13	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529830423	7	145348088	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	145348088	145348098	1	18	374.135	-	-	9	1	1	-	-	./.	0	0	0	0	20	16	20	17	0	0	./.	2	5	3	8	24	27	24	27	3	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529832534	7	151928695	GTCTCTACCAAAAATACAAA	GGT	290	PASS	BAGE3	CCDS5931.1	r.?	-	-	Complex	intronic	DI	151928696	151928714	19	32	0	-	-	0	1	1	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	7	0	0	14	16	14	18	3	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529832943	7	152396834	T	TG	720	PASS	-	-	-	-	-	Ins	-	I	152396834	152396839	1	48	636.558	-	-	4	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	7	5	9	7	21	24	21	24	9	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529837773	8	8385899	GATTACAGGC	G	327	PASS	-	-	-	-	-	Del	-	D	8385899	8385911	9	42	595.31	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	5	6	2	10	16	27	20	27	6	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529838483	8	10171006	C	CA	300	PASS	MSRA	CCDS47799.1	r.?	-	-	Ins	intronic	I	10171006	10171016	1	10	259.758	-	-	9	1	-	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSRA|CCDS47799.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	1	8	6	37	23	37	23	8	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529841794	8	20184705	AGACAGAAAGTGGG	A	414	PASS	-	-	-	-	-	Del	-	D	20184705	20184719	13	63	757.667	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	8	6	8	6	20	16	21	16	9	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529841873	8	20694591	GTGTATCCATAGCTACACAGAT	G	377	PASS	-	-	-	-	-	Del	-	D	20694591	20694615	21	50	703.548	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	9	4	8	29	18	29	19	4	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529842224	8	22210674	T	TA	840	PASS	PIWIL2	CCDS6029.1	r.2737_2738insa	c.2606_2607insA	p.T870fs*16	Ins	frameshift	I	22210674	22210677	1	63	749.238	-	-	2	1	1	PIWIL2|CCDS6029.1|r.2737_2738insa|c.2606_2607insA|p.T870fs*16|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	PIWIL2|CCDS6029.1|r.2737_2738insa|c.2606_2607insA|p.T870fs*16|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	9	20	9	20	0	0	./.	8	6	9	8	22	16	22	16	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529845338	8	31409537	TTCTAAAGTGTTTAAAGAGA	T	522	PASS	-	-	-	-	-	Del	-	D	31409537	31409558	19	91	974.143	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	12	6	11	7	26	23	27	23	12	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529847782	8	40771821	CA	C	720	PASS	-	-	-	-	-	Del	-	D	40771821	40771823	1	45	649.429	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	8	6	12	18	27	18	27	6	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529849655	8	52376075	T	TA	900	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	intronic	I	52376075	52376083	1	72	802.153	-	-	7	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	7	8	13	12	29	31	29	31	13	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529853641	8	67180842	TTAATCTTAATCTGTTTCTCCAATTATATTTCCACTAATGCTACTGAACCC	T	290	PASS	-	-	-	-	-	Del	-	D	67180842	67180894	50	36	533.966	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	5	5	1	1	10	14	14	18	5	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529855438	8	73568623	AAGGC	A	507	PASS	KCNB2	CCDS6209.1	r.?	-	-	Del	intronic	D	73568623	73568630	4	35	540.589	-	-	1	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	4	6	4	8	13	13	13	13	4	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529856206	8	76014843	GC	G	358	PASS	-	-	-	-	-	Del	-	D	76014843	76014847	1	14	358.364	-	-	3	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	1	6	3	6	10	9	10	9	3	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529857265	8	79675588	T	TA	660	PASS	IL7	CCDS6224.1	r.?	-	-	Ins	intronic	I	79675588	79675593	1	42	588.085	-	-	4	1	1	IL7|CCDS6224.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL7|CCDS6224.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	8	20	8	0	0	./.	6	5	10	9	33	24	34	24	10	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529861392	8	95867936	GAGAAGAGAACAT	G	261	PASS	INTS8	CCDS34925.1	r.?	-	-	Del	intronic	D	95867936	95867950	12	30	487.072	-	-	1	1	1	INTS8|CCDS34925.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INTS8|CCDS34925.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	4	5	6	19	26	19	26	5	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529862494	8	99814876	C	CACA	329	PASS	ENSG00000104375	CCDS47900.1	r.?	-	-	Ins	intronic	I	99814876	99814881	3	15	313.877	-	-	1	1	1	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	4	2	5	3	26	23	26	23	5	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529863763	8	104183347	AAG	A	300	PASS	BAALC	CCDS6297.1	r.?	-	-	Del	intronic	D	104183347	104183363	2	10	270.595	-	-	7	1	1	BAALC|CCDS6297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAALC|CCDS6297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	4	2	21	23	21	23	4	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529869827	8	126143784	T	TA	600	PASS	NSMCE2	CCDS6356.1	r.?	-	-	Ins	intronic	I	126143784	126143786	1	27	526.741	-	-	1	1	1	NSMCE2|CCDS6356.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NSMCE2|CCDS6356.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	2	8	4	11	22	26	22	26	4	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529873413	8	139832478	ATACATAAAATGGTT	A	261	PASS	COL22A1	CCDS6376.1	r.?	-	-	Del	intronic	D	139832478	139832494	14	30	487.072	-	-	1	1	1	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	5	4	5	19	17	19	17	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529874662	8	144634360	CCATGGTG	C	261	PASS	ENSG00000228381	ENST00000442732	r.?	-	-	Del	upstream	D	144634360	144634368	7	28	486.47	-	-	1	1	1	ENSG00000228381|ENST00000442732|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000228381|ENST00000442732|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	11	7	11	0	0	./.	6	3	7	6	18	20	18	20	7	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529877585	9	8959341	TTTACTTC	T	377	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8959341	8959349	7	54	704.522	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	8	6	8	15	21	15	21	6	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529877676	9	9285571	CT	C	660	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	9285571	9285576	1	40	596.134	-	-	4	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	7	6	11	21	28	21	28	6	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529878004	9	10214772	CT	C	747	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	10214772	10214778	1	63	758.716	-	-	5	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	8	6	9	8	26	20	26	20	9	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529880410	9	18212998	ACTT	A	660	PASS	-	-	-	-	-	Del	-	D	18212998	18213004	3	40	591.92	-	-	1	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	4	7	6	13	28	30	28	30	6	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529881827	9	23716755	T	TA	720	PASS	ELAVL2	CCDS6515.1	r.?	-	-	Ins	intronic	I	23716755	23716760	1	49	642.502	-	-	4	1	1	ELAVL2|CCDS6515.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ELAVL2|CCDS6515.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	15	14	0	0	./.	6	6	8	12	21	25	21	25	8	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529884433	9	32955631	AGGCT	A	476	PASS	-	-	-	-	-	Del	-	D	32955631	32955639	4	35	538.93	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	4	6	7	7	19	17	19	17	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529889748	9	70948571	GA	G	250	PASS	-	-	-	-	-	Del	-	D	70948571	70948574	1	30	487.746	-	-	2	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	4	5	7	8	18	16	18	16	7	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529892390	9	79709506	CA	C	749	PASS	-	-	-	-	-	Del	-	D	79709506	79709508	1	54	704.522	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	8	6	11	18	24	18	24	6	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529893518	9	83563704	CA	C	840	PASS	-	-	-	-	-	Del	-	D	83563704	83563706	1	63	758.114	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	8	6	10	10	16	23	16	23	10	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529895238	9	89462546	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	89462546	89462555	1	15	320.95	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	2	7	5	23	16	23	16	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529895450	9	90146551	TC	T	1200	PASS	DAPK1	CCDS43842.1	r.?	-	-	Del	intronic	D	90146551	90146556	1	120	1065.82	-	-	4	1	1	DAPK1|CCDS43842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAPK1|CCDS43842.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	6	16	6	0	0	./.	9	11	11	13	21	21	21	21	11	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529896576	9	94591144	CT	C	600	PASS	ROR2	CCDS6691.1	r.?	-	-	Del	intronic	D	94591144	94591147	1	36	541.338	-	-	2	1	1	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	5	5	6	7	24	23	24	23	6	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529898761	9	103283943	TCACTTCAGTACCTTTTATATA	T	551	PASS	TMEFF1	CCDS6750.1	r.?	-	-	Del	intronic	D	103283943	103283966	21	110	1028.48	-	-	1	1	1	TMEFF1|CCDS6750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEFF1|CCDS6750.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	10	9	9	9	18	19	19	19	10	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529898939	9	104117781	ACCGTACTAATCTCCTTAT	A	348	PASS	BAAT	CCDS6752.1	r.?	-	-	Del	downstream	D	104117781	104117801	18	40	650.328	-	-	1	1	1	BAAT|CCDS6752.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	BAAT|CCDS6752.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	13	10	13	0	0	./.	9	3	7	3	23	14	25	14	9	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529899259	9	105175495	CAGGGT	C	343	PASS	-	-	-	-	-	Del	-	D	105175495	105175501	5	18	378.756	-	-	1	1	1	-	-	./.	0	0	0	0	3	9	3	9	0	0	./.	2	5	2	5	14	13	14	13	2	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529900007	9	107384361	G	GT	900	PASS	OR13C9	CCDS35093.1	r.?	-	-	Ins	upstream	I	107384361	107384366	1	66	803.88	-	-	4	1	1	OR13C9|CCDS35093.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	OR13C9|CCDS35093.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	10	11	10	0	0	./.	10	5	12	7	20	18	20	19	12	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529900616	9	109454919	GA	G	1020	PASS	-	-	-	-	-	Del	-	D	109454919	109454922	1	90	920.094	-	-	2	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	8	9	10	13	26	22	26	22	10	13	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529900912	9	110568305	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	110568305	110568308	1	24	428.736	-	-	2	1	1	-	-	./.	0	0	0	0	15	14	16	14	0	0	./.	3	5	6	9	21	25	21	26	6	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529905317	9	124763699	TA	T	540	PASS	TTLL11	CCDS48012.1	r.?	-	-	Del	intronic	D	124763699	124763702	1	18	485.338	-	-	2	1	1	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	1	8	3	9	13	21	13	21	3	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529906673	9	130406283	GC	G	780	PASS	STXBP1	CCDS6874.1	r.?	-	-	Del	intronic	D	130406283	130406286	1	54	699.104	-	-	2	1	1	STXBP1|CCDS6874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STXBP1|CCDS6874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	8	9	10	20	20	20	20	9	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529907697	9	133346369	C	CT	960	PASS	ASS1	CCDS6933.1	r.?	-	-	Ins	intronic	I	133346369	133346371	1	65	856.267	-	-	1	1	1	ASS1|CCDS6933.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASS1|CCDS6933.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	12	4	12	11	19	22	19	23	12	11	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529907978	9	134258468	CTGGAATGTT	C	261	PASS	-	-	-	-	-	Del	-	D	134258468	134258478	9	30	481.726	-	-	1	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	5	4	6	6	19	16	19	16	6	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529908915	9	137174930	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	137174930	137174939	1	6	257.725	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	0	5	2	6	9	13	9	13	2	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529909000	9	137631576	CT	C	329	PASS	COL5A1	CCDS6982.1	r.?	-	-	Del	intronic	D	137631576	137631579	1	16	318.542	-	-	2	1	1	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL5A1|CCDS6982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	3	3	4	5	16	15	16	15	4	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529910587	X	5020191	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	5020191	5020201	1	16	421.242	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	7	1	10	3	32	17	32	18	10	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529913409	X	17146611	TC	T	480	PASS	REPS2	CCDS14180.2	r.?	-	-	Del	intronic	D	17146611	17146613	1	21	433.886	-	-	1	1	1	REPS2|CCDS14180.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	REPS2|CCDS14180.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	6	2	8	3	23	12	23	12	8	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529914770	X	24254889	AC	A	269	PASS	-	-	-	-	-	Del	-	D	24254889	24254891	1	12	271.179	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	3	2	21	19	21	19	3	2	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529918565	X	42811286	TAA	T	900	PASS	-	-	-	-	-	Del	-	D	42811286	42811289	2	70	803.301	-	-	2	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	6	9	8	10	21	20	21	20	8	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529921917	X	64619774	TGG	T	480	PASS	-	-	-	-	-	Del	-	D	64619774	64619780	2	25	433.886	-	-	5	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	4	4	4	6	16	21	16	21	4	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529924085	X	75533520	TCATCACAG	T	406	PASS	-	-	-	-	-	Del	-	D	75533520	75533529	8	55	759.3	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	10	5	10	23	21	23	21	5	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529924706	X	78892479	TTTTATTATA	T	493	PASS	-	-	-	-	-	Del	-	D	78892479	78892489	9	88	920.803	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	10	7	13	8	19	22	19	22	13	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529929310	X	99443176	AGGAAT	A	449	PASS	-	-	-	-	-	Del	-	D	99443176	99443184	5	25	433.886	-	-	1	1	1	-	-	./.	0	0	0	0	4	17	4	17	0	0	./.	4	4	4	4	15	16	15	16	4	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529930606	X	106506817	CA	C	540	PASS	-	-	-	-	-	Del	-	D	106506817	106506819	1	30	482.101	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	4	7	5	22	16	22	16	7	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529931190	X	110320187	ATAAATTCAG	A	493	PASS	PAK3	CCDS14554.1	r.?	-	-	Del	intronic	D	110320187	110320200	9	78	919.599	-	-	1	1	1	PAK3|CCDS14554.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAK3|CCDS14554.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	12	5	13	5	32	14	32	14	13	5	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529931772	X	113487732	CCCTTT	C	464	PASS	-	-	-	-	-	Del	-	D	113487732	113487738	5	72	865.965	-	-	1	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	11	5	12	19	23	19	23	5	12	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529933704	X	121054892	ACAGCG	A	261	PASS	-	-	-	-	-	Del	-	D	121054892	121054902	5	28	483.907	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	6	3	6	22	18	22	18	3	6	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529935295	X	127994644	C	CA	900	PASS	-	-	-	-	-	Ins	-	I	127994644	127994653	1	70	802.096	-	-	8	1	1	-	-	./.	0	0	0	0	14	19	14	19	0	0	./.	9	6	12	7	32	31	32	32	12	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529936019	X	132136036	GTAAATGTT	G	348	PASS	-	-	-	-	-	Del	-	D	132136036	132136048	8	49	647.216	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	6	6	8	8	26	19	26	19	8	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529936940	X	136581278	AT	A	480	PASS	-	-	-	-	-	Del	-	D	136581278	136581281	1	25	433.886	-	-	2	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	4	5	8	23	26	23	26	5	8	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529937060	X	137017241	GC	G	720	PASS	-	-	-	-	-	Del	-	D	137017241	137017245	1	48	650.226	-	-	3	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	7	7	9	14	19	14	19	7	9	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529937777	X	140412963	C	CGT	540	PASS	-	-	-	-	-	Ins	-	I	140412963	140412982	2	30	474.876	-	-	9	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	5	4	7	7	30	22	30	22	7	7	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529937811	X	140539598	CA	C	423	PASS	-	-	-	-	-	Del	-	D	140539598	140539607	1	21	433.886	-	-	8	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	2	6	3	10	14	29	14	29	3	10	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529939263	X	146157260	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	146157260	146157270	1	20	370.017	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	13	17	0	0	./.	4	3	4	3	24	29	24	29	4	3	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529939960	X	149769750	TA	T	360	PASS	MTM1	CCDS14694.1	r.?	-	-	Del	intronic	D	149769750	149769755	1	16	325.414	-	-	4	1	1	MTM1|CCDS14694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTM1|CCDS14694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	4	14	17	14	17	4	4	1	1	1	1	1	1	1	1
2291030	PD18765a	PD18765b	2529940281	X	151020149	AATCAAGCT	A	609	PASS	-	-	-	-	-	Del	-	D	151020149	151020158	8	132	1135.94	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	11	10	12	11	24	24	24	24	12	11	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539172545	1	242266152	TA	T	660	PASS	PLD5	CCDS1621.1	r.?	-	-	Del	intronic	D	242266152	242266162	1	42	592.826	-	-	9	1	1	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	5	6	7	7	23	23	23	23	7	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539207632	10	111517346	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	111517346	111517354	1	25	424.155	-	-	7	1	1	-	-	./.	0	0	0	0	10	10	10	11	0	0	./.	4	4	7	5	29	30	29	30	7	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539220932	11	20152764	T	TTA	269	PASS	-	-	-	-	-	Ins	-	I	20152764	20152765	2	10	260.577	-	-	0	1	1	-	-	./.	0	0	0	0	14	7	14	9	0	0	./.	1	4	1	0	19	15	19	15	2	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539251139	11	127428454	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	127428454	127428463	1	24	427.881	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	3	7	4	24	24	24	24	7	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539251172	11	127543835	CTG	C	1169	PASS	-	-	-	-	-	Del	-	D	127543835	127543843	2	120	1080.24	-	-	3	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	9	11	10	13	25	29	25	29	10	13	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539268940	12	54063224	C	CA	420	PASS	ATP5G2	CCDS31812.1	r.?	-	-	Ins	intronic	I	54063224	54063228	1	20	370.776	-	-	3	1	1	ATP5G2|CCDS31812.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP5G2|CCDS31812.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	3	4	3	5	25	24	25	25	3	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539302257	13	51747623	G	GTAA	407	PASS	-	-	-	-	-	Ins	-	I	51747623	51747625	3	12	577.06	-	-	0	1	1	-	-	./.	0	0	0	0	5	7	6	7	0	0	./.	11	0	12	0	29	19	29	19	12	0	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539331172	14	51709501	T	TTAAAA	298	PASS	TMX1	CCDS41953.1	r.?	-	-	Ins	intronic	I	51709501	51709502	5	7	301.494	-	-	0	1	1	TMX1|CCDS41953.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMX1|CCDS41953.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	0	6	0	7	15	21	15	21	0	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539362272	15	71448923	GGAAA	G	505	PASS	THSD4	CCDS10238.2	r.?	-	-	Del	intronic	D	71448923	71448928	4	42	594.579	-	-	1	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	6	5	6	7	18	23	18	23	6	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539364322	15	78831610	G	GA	300	PASS	PSMA4	CCDS10303.1	r.?	-	-	Ins	upstream	I	78831610	78831617	1	10	268.895	-	-	6	1	1	PSMA4|CCDS10303.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PSMA4|CCDS10303.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	3	12	3	12	0	0	./.	1	4	2	7	16	27	17	27	2	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539369347	15	97411461	CA	C	300	PASS	-	-	-	-	-	Del	-	D	97411461	97411463	1	12	262.874	-	-	1	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	3	20	21	20	21	2	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539372556	16	4163166	CT	C	300	PASS	ADCY9	CCDS32382.1	r.?	-	-	Del	intronic	D	4163166	4163174	1	12	270.748	-	-	7	1	1	ADCY9|CCDS32382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADCY9|CCDS32382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	3	2	3	5	42	46	42	46	3	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539387809	16	48887784	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	48887784	48887801	2	12	270.146	-	-	8	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	3	3	52	41	52	41	3	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539409302	17	37378010	CTCACCCTCGCCTCTCAGCTGGGCCCTGCCTGGGCCA	C	300	PASS	STAC2	CCDS11335.1	r.?	-	-	Del	intronic	D	37378010	37378055	36	10	271.106	-	-	1	1	1	STAC2|CCDS11335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAC2|CCDS11335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	3	10	3	0	0	./.	1	4	0	0	15	13	15	15	1	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539430548	18	26754170	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	26754170	26754178	1	10	268.148	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	9	3	38	12	38	12	9	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539431199	18	29095013	T	TA	660	PASS	DSG2	CCDS42423.1	r.?	-	-	Ins	intronic	I	29095013	29095015	1	40	588.843	-	-	1	1	1	DSG2|CCDS42423.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DSG2|CCDS42423.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	12	0	0	./.	7	4	7	5	18	20	18	20	7	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539431372	18	29605706	CGT	C	269	PASS	RNF125	CCDS11902.1	r.?	-	-	Del	intronic	D	29605706	29605721	2	12	268.148	-	-	7	1	-	RNF125|CCDS11902.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF125|CCDS11902.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	6	0	0	./.	2	3	2	3	18	16	18	18	2	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539449071	19	10283508	T	TAAATA	269	PASS	DNMT1	CCDS45958.1	r.?	-	-	Ins	intronic	I	10283508	10283529	5	10	257.134	-	-	4	1	-	DNMT1|CCDS45958.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNMT1|CCDS45958.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	7	6	8	0	0	./.	1	4	1	6	17	32	17	32	1	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539462206	19	54657912	AC	A	480	PASS	CNOT3	CCDS12880.1	r.?	-	-	Del	intronic	D	54657912	54657915	1	21	433.088	-	-	2	1	1	CNOT3|CCDS12880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNOT3|ENST00000457463|r.990delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	6	8	6	8	0	0	./.	6	2	8	3	23	15	23	15	8	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539472196	2	29529853	AC	A	420	PASS	ALK	CCDS33172.1	r.?	-	-	Del	intronic	D	29529853	29529856	1	18	377.397	-	-	2	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	2	5	4	7	15	21	15	21	4	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539476186	2	43476065	TCTC	T	360	PASS	THADA	CCDS46268.1	r.?	-	-	Del	intronic	D	43476065	43476070	3	15	322.882	-	-	1	1	1	THADA|CCDS46268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THADA|CCDS46268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	4	6	6	17	24	17	24	6	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539478797	2	52656219	TA	T	600	PASS	-	-	-	-	-	Del	-	D	52656219	52656221	1	35	539.139	-	-	1	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	6	5	8	20	24	20	24	5	8	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539494760	2	117408570	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	117408570	117408579	1	36	529.506	-	-	8	1	1	-	-	./.	0	0	0	0	5	17	5	18	0	0	./.	5	5	7	8	34	40	34	40	7	8	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539502175	2	142240468	C	CA	387	PASS	LRP1B	CCDS2182.1	r.?	-	-	Ins	intronic	I	142240468	142240476	1	21	426.495	-	-	7	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	2	9	2	9	0	0	./.	2	6	2	10	16	33	16	33	2	10	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539507403	2	161714756	ATC	A	420	PASS	-	-	-	-	-	Del	-	D	161714756	161714773	2	18	377.397	-	-	8	1	-	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	5	2	5	2	34	19	34	19	5	2	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539514992	2	189853614	T	TA	540	PASS	COL3A1	CCDS2297.1	r.?	-	-	Ins	intronic	I	189853614	189853620	1	28	479.807	-	-	5	1	1	COL3A1|CCDS2297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL3A1|CCDS2297.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	3	6	5	8	19	24	19	24	5	8	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539517198	2	197236017	CAG	C	720	PASS	HECW2	CCDS33354.1	r.?	-	-	Del	intronic	D	197236017	197236021	2	48	646.967	-	-	1	1	1	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HECW2|CCDS33354.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	5	10	6	24	24	24	24	10	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539520223	2	207898563	GT	G	300	PASS	-	-	-	-	-	Del	-	D	207898563	207898571	1	12	269.57	-	-	7	1	1	-	-	./.	0	0	0	0	3	9	3	9	0	0	./.	2	3	4	4	27	27	27	27	4	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539520309	2	208298895	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	208298895	208298905	1	12	262.345	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	2	3	23	33	23	33	2	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539521639	2	213053818	GT	G	480	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	213053818	213053820	1	9	418.066	-	-	1	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	8	0	11	0	28	24	28	24	11	0	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539528943	2	237902726	GT	G	360	PASS	-	-	-	-	-	Del	-	D	237902726	237902728	1	7	317.463	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	0	8	1	20	18	20	18	8	1	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539541286	20	39329955	GA	G	480	PASS	-	-	-	-	-	Del	-	D	39329955	39329958	1	25	436.039	-	-	2	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	4	4	5	6	12	22	12	22	5	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539543463	20	47709408	CA	C	449	PASS	CSE1L	CCDS13412.1	r.?	-	-	Del	intronic	D	47709408	47709410	1	24	428.814	-	-	1	1	1	CSE1L|CCDS13412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSE1L|CCDS13412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	3	5	7	8	28	19	28	19	7	8	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539551782	21	15141132	A	AC	261	PASS	-	-	-	-	-	Ins	-	I	15141132	15141133	1	10	485.109	-	-	0	1	1	-	-	./.	0	0	0	0	18	10	19	10	0	0	./.	9	0	12	0	46	19	46	19	12	0	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539552534	21	17646552	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	17646552	17646560	1	12	269.505	-	-	7	1	1	-	-	./.	0	0	0	0	9	16	10	16	0	0	./.	2	3	4	4	30	38	30	38	4	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539552723	21	18307416	TAAGA	T	418	PASS	-	-	-	-	-	Del	-	D	18307416	18307426	4	21	435.422	-	-	2	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	2	6	2	11	13	31	13	31	2	11	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539554329	21	22559543	AAAAC	A	540	PASS	NCAM2	CCDS42910.1	r.?	-	-	Del	intronic	D	22559543	22559571	4	30	490.528	-	-	6	1	-	NCAM2|CCDS42910.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCAM2|CCDS42910.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	5	4	7	5	21	30	21	30	7	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539557951	21	33068632	AT	A	360	PASS	SFRS15	CCDS33537.1	r.?	-	-	Del	intronic	D	33068632	33068637	1	15	327.018	-	-	4	1	1	SFRS15|CCDS33537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRS15|CCDS33537.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	2	4	2	5	11	29	11	29	2	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539582649	3	30980329	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	30980329	30980339	1	10	267.06	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	1	4	1	4	36	34	36	34	1	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539622424	3	178129211	C	CT	540	PASS	KCNMB2	ENST00000437510	r.?	-	-	Ins	intronic	I	178129211	178129217	1	28	480.708	-	-	5	1	1	KCNMB2|ENST00000437510|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KCNMB2|ENST00000437510|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	6	3	9	4	27	25	27	25	9	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539644115	4	54988618	A	AT	300	PASS	FIP1L1	ENST00000507166	r.?	-	-	Ins	intronic	I	54988618	54988628	1	10	264.454	-	-	9	1	1	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FIP1L1|ENST00000507166|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	1	4	4	4	29	32	30	32	4	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539696845	5	37098878	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	37098878	37098888	1	10	266.706	-	-	9	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	4	1	4	1	27	14	27	14	4	1	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539701216	5	56178436	GAAGCATC	G	348	PASS	MAP3K1	CCDS43318.1	r.3410_3416delAAGCAUC	c.3410_3416delAAGCATC	p.E1137fs*9	Del	frameshift	D	56178436	56178444	7	45	646.357	-	-	1	1	1	MAP3K1|CCDS43318.1|r.3410_3416delAAGCAUC|c.3410_3416delAAGCATC|p.E1137fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MAP3K1|CCDS43318.1|r.3410_3416delAAGCAUC|c.3410_3416delAAGCATC|p.E1137fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	5	7	5	7	0	0	./.	4	8	4	9	17	28	17	28	4	9	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539709711	5	88749164	G	GA	389	PASS	-	-	-	-	-	Ins	-	I	88749164	88749173	1	14	367.609	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	1	6	5	7	24	24	24	24	5	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539722222	5	136396162	AG	A	300	PASS	SPOCK1	CCDS4191.1	r.?	-	-	Del	intronic	D	136396162	136396165	1	10	269.717	-	-	2	1	1	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK1|CCDS4191.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	1	4	2	6	23	28	23	28	2	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539722534	5	137516532	AT	A	540	PASS	BRD8	CCDS4198.1	r.?	-	-	Del	upstream	D	137516532	137516538	1	28	484.165	-	-	5	1	1	BRD8|CCDS4198.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KIF20A|CCDS4199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	10	5	10	0	0	./.	3	6	7	6	22	25	22	25	7	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539725293	5	148360483	CAG	C	300	PASS	SH3TC2	ENST00000504690	r.?	-	-	Del	intronic	D	148360483	148360502	2	12	270.319	-	-	9	1	1	SH3TC2|ENST00000504690|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	SH3TC2|ENST00000504690|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	4	28	20	28	20	3	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539735604	6	3882405	CTA	C	629	PASS	-	-	-	-	-	Del	-	D	3882405	3882408	2	36	594.014	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	8	3	11	3	18	27	18	27	11	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539749681	6	45036773	C	CTG	540	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Ins	intronic	I	45036773	45036778	2	30	472.657	-	-	2	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	5	6	7	32	23	32	23	6	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539779164	6	153021888	TATTCTCTCAGTACTTGA	T	348	PASS	MYCT1	CCDS5239.1	r.?	-	-	Del	intronic	D	153021888	153021906	17	48	643.254	-	-	1	1	1	MYCT1|CCDS5239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYCT1|CCDS5239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	5	7	4	6	22	19	23	20	5	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539780798	6	158692979	CAT	C	600	PASS	-	-	-	-	-	Del	-	D	158692979	158692982	2	35	540.56	-	-	1	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	4	6	6	9	23	30	23	30	6	9	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539791052	7	21685755	C	CA	540	PASS	DNAH11	ENST00000424253	r.?	-	-	Ins	intronic	I	21685755	21685764	1	28	481.349	-	-	8	1	1	DNAH11|ENST00000424253|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH11|ENST00000424253|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	6	4	7	30	27	30	27	4	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539791532	7	23227555	GTC	G	269	PASS	NUPL2	CCDS5379.1	r.?	-	-	Del	intronic	D	23227555	23227573	2	6	270.427	-	-	8	1	1	NUPL2|CCDS5379.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUPL2|CCDS5379.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	12	4	12	0	0	./.	0	5	0	5	14	26	14	26	0	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539797480	7	44109405	GGT	G	300	PASS	POLM	CCDS34625.1	r.?	-	-	Del	downstream	D	44109405	44109422	2	12	267.416	-	-	8	1	-	POLM|CCDS34625.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PGAM2|CCDS34624.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	7	7	7	0	0	./.	3	2	3	2	21	20	21	20	3	2	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539804218	7	66380625	AC	A	389	PASS	-	-	-	-	-	Del	-	D	66380625	66380628	1	20	370.168	-	-	2	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	3	4	4	4	14	16	14	16	4	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539810446	7	85918309	TA	T	480	PASS	-	-	-	-	-	Del	-	D	85918309	85918319	1	25	430.876	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	4	4	6	4	27	20	27	20	6	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539812307	7	93353469	AAG	A	269	PASS	GNGT1	ENST00000455502	r.?	-	-	Del	intronic	D	93353469	93353483	2	12	267.416	-	-	6	1	1	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNGT1|ENST00000455502|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	3	2	3	3	21	21	21	21	3	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539836679	8	20034170	ATT	A	480	PASS	SLC18A1	CCDS6013.1	r.?	-	-	Del	intronic	D	20034170	20034177	2	24	431.505	-	-	6	1	1	SLC18A1|CCDS6013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC18A1|CCDS6013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	5	4	6	6	14	6	14	4	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539841447	8	39068430	CTG	C	360	PASS	ADAM32	CCDS47846.1	r.?	-	-	Del	intronic	D	39068430	39068448	2	15	323.478	-	-	8	1	1	ADAM32|CCDS47846.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAM32|CCDS47846.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	4	3	6	48	57	48	57	3	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539842504	8	41576439	CCAACTCCCCTATAACAGTACGTGGCCTGTGGGCA	C	377	PASS	ANK1	CCDS47849.1	r.?	-	-	Del	intronic	D	41576439	41576475	34	54	700.368	-	-	1	1	1	ANK1|CCDS47849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK1|CCDS47849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	8	5	6	3	25	30	28	32	9	5	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539849164	8	64255079	G	GA	569	PASS	-	-	-	-	-	Ins	-	I	64255079	64255089	1	20	494.378	-	-	9	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	1	9	1	0	31	36	31	37	2	9	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539857209	8	85791026	G	GA	300	PASS	RALYL	ENST00000399361	r.?	-	-	Ins	intronic	I	85791026	85791036	1	10	261.036	-	-	9	1	1	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALYL|ENST00000399361|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	15	7	0	0	./.	1	4	2	4	53	59	53	59	2	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539863589	8	103426505	TAC	T	300	PASS	UBR5	CCDS34933.1	r.?	-	-	Del	upstream	D	103426505	103426523	2	10	270.067	-	-	8	1	1	UBR5|CCDS34933.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	UBR5|CCDS34933.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	5	8	5	0	0	./.	1	4	1	4	32	39	32	39	1	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539863806	8	103927993	TTC	T	269	PASS	-	-	-	-	-	Del	-	D	103927993	103927997	2	6	264.046	-	-	1	1	-	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	5	0	9	0	45	30	46	30	9	0	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539867628	8	114470361	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	114470361	114470380	2	12	265.853	-	-	9	1	-	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	2	3	3	3	41	34	41	34	3	3	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539874882	8	134134206	TTC	T	360	PASS	TG	CCDS34944.1	r.?	-	-	Del	intronic	D	134134206	134134224	2	15	324.08	-	-	8	1	-	TG|CCDS34944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TG|CCDS34944.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	6	2	49	41	49	41	6	2	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539876867	8	139743906	AGT	A	300	PASS	COL22A1	CCDS6376.1	r.?	-	-	Del	intronic	D	139743906	139743910	2	12	261.036	-	-	1	1	1	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL22A1|CCDS6376.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	2	3	5	4	42	39	42	39	5	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539877882	8	142525529	C	CCCCTG	377	PASS	ENSG00000226490	ENST00000427937	r.?	-	-	Ins	intronic	I	142525529	142525544	5	14	658.826	-	-	2	1	1	ENSG00000226490|ENST00000427937|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000226490|ENST00000427937|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	13	0	1	0	42	6	42	6	14	0	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539884031	9	18550251	ATTAAGGTTGCAGACCTTAAGATC	A	377	PASS	ADAMTSL1	CCDS47954.1	r.?	-	-	Del	intronic	D	18550251	18550287	23	36	703.897	-	-	1	1	1	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	2	11	2	9	14	19	14	21	2	11	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539890915	9	66465479	GGGTATTTAGTTT	GGACATTAGGTT	264	PASS	-	-	-	-	-	Complex	-	DI	66465480	66465491	12	45	0	-	-	0	1	1	-	-	./.	0	0	0	0	43	67	43	67	0	0	./.	4	8	0	0	114	138	114	138	4	8	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539896703	9	83246935	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	83246935	83246952	2	10	259.754	-	-	8	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	4	1	4	1	23	28	23	28	4	1	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539903237	9	109097548	GTT	G	538	PASS	-	-	-	-	-	Del	-	D	109097548	109097552	2	35	540.579	-	-	3	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	4	6	4	25	24	25	24	6	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539908077	9	126726946	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	126726946	126726953	1	15	321.819	-	-	6	1	1	-	-	./.	0	0	0	0	3	13	3	13	0	0	./.	2	4	3	4	15	19	15	19	3	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539912083	9	141071520	GTGTCTCAGAGCAGTTTACAGCAA	G	490	PASS	-	-	-	-	-	Del	-	D	141071520	141071547	23	38	1029.93	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	18	1	15	1	40	18	42	19	18	2	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539913364	X	6656294	CA	C	660	PASS	-	-	-	-	-	Del	-	D	6656294	6656296	1	42	596.898	-	-	1	1	1	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	5	6	5	7	18	22	18	22	5	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539923839	X	64093411	G	GA	569	PASS	-	-	-	-	-	Ins	-	I	64093411	64093420	1	36	529.389	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	5	5	6	7	27	20	27	20	6	7	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539924297	X	67243804	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	67243804	67243807	1	12	268.307	-	-	2	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	3	2	6	4	21	27	21	27	6	4	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539925731	X	74769825	TA	T	403	PASS	-	-	-	-	-	Del	-	D	74769825	74769832	1	36	541.43	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	5	6	6	29	19	29	19	6	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539935623	X	123119089	C	CT	600	PASS	STAG2	CCDS14607.1	r.?	-	-	Ins	intronic	I	123119089	123119098	1	32	535.409	-	-	8	1	1	STAG2|CCDS14607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	STAG2|CCDS14607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	7	3	9	6	34	22	35	22	9	6	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539937051	X	129095713	CT	C	540	PASS	-	-	-	-	-	Del	-	D	129095713	129095719	1	24	485.963	-	-	5	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	7	3	9	22	21	22	21	3	9	1	1	1	1	1	1	1	1
2291371	PD18772a	PD18772b	2539938047	X	135180292	A	AATAT	327	PASS	-	-	-	-	-	Ins	-	I	135180292	135180294	4	20	356.364	-	-	0	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	4	3	5	4	21	16	22	16	5	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766651884	1	56474426	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	56474426	56474434	1	35	527.54	-	-	7	1	1	-	-	./.	0	0	0	0	27	19	27	19	0	0	./.	4	6	7	9	23	36	24	36	7	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766654464	1	64002846	AT	A	360	PASS	EFCAB7	CCDS30737.1	r.?	-	-	Del	intronic	D	64002846	64002850	1	15	322.304	-	-	3	1	1	EFCAB7|CCDS30737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFCAB7|CCDS30737.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	11	28	11	0	0	./.	4	2	4	3	38	25	38	25	4	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766656419	1	69877455	GT	G	600	PASS	-	-	-	-	-	Del	-	D	69877455	69877457	1	35	537.173	-	-	1	1	1	-	-	./.	0	0	0	0	27	21	27	21	0	0	./.	4	6	5	10	29	32	29	32	5	10	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766656514	1	70135151	G	GT	660	PASS	LRRC7	ENST00000310961	r.?	-	-	Ins	intronic	I	70135151	70135159	1	42	584.268	-	-	7	1	1	LRRC7|ENST00000310961|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC7|ENST00000310961|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	35	29	36	0	0	./.	5	6	7	6	28	31	28	31	7	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766656958	1	71612320	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	71612320	71612324	1	56	690.498	-	-	3	1	1	-	-	./.	0	0	0	0	36	33	36	33	0	0	./.	6	7	9	9	27	25	27	25	9	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766660909	1	83260579	TA	T	360	PASS	-	-	-	-	-	Del	-	D	83260579	83260581	1	16	322.304	-	-	1	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	3	3	5	5	21	23	21	23	5	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766665325	1	95235263	A	AC	660	PASS	-	-	-	-	-	Ins	-	I	95235263	95235264	1	42	583.063	-	-	0	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	5	6	6	9	28	25	28	26	6	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766666562	1	99208931	GT	G	360	PASS	SNX7	CCDS755.2	r.?	-	-	Del	intronic	D	99208931	99208939	1	15	322.304	-	-	7	1	1	SNX7|CCDS755.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX7|CCDS755.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	4	2	6	3	26	18	26	18	6	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766668394	1	104520056	CT	C	780	PASS	-	-	-	-	-	Del	-	D	104520056	104520063	1	56	698.325	-	-	6	1	1	-	-	./.	0	0	0	0	16	27	16	27	0	0	./.	6	7	7	8	25	28	25	28	7	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766668742	1	105322755	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	105322755	105322762	1	24	421.309	-	-	6	1	1	-	-	./.	0	0	0	0	18	29	19	30	0	0	./.	3	5	4	9	23	27	24	27	4	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766678346	1	149997027	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	149997027	149997031	1	15	318.691	-	-	3	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	2	4	4	7	27	23	27	23	4	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766683847	1	165906911	A	AG	720	PASS	-	-	-	-	-	Ins	-	I	165906911	165906917	1	45	636.179	-	-	5	1	1	-	-	./.	0	0	0	0	16	17	16	18	0	0	./.	4	8	5	12	26	30	26	30	5	12	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766685414	1	170714518	CA	C	540	PASS	-	-	-	-	-	Del	-	D	170714518	170714522	1	18	483.456	-	-	3	1	1	-	-	./.	0	0	0	0	25	21	25	21	0	0	./.	8	1	9	1	19	18	19	18	9	1	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766685456	1	170895051	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	170895051	170895060	1	20	354.949	-	-	8	1	1	-	-	./.	0	0	0	0	19	47	19	47	0	0	./.	4	3	8	5	18	34	19	34	8	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766692862	1	193536223	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	193536223	193536229	1	10	265.576	-	-	5	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	1	4	1	8	19	18	19	18	1	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766693310	1	194711190	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	194711190	194711198	1	10	265.576	-	-	7	1	1	-	-	./.	0	0	0	0	27	19	27	19	0	0	./.	4	1	4	1	30	26	30	26	4	1	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766700366	1	214929316	CT	C	809	PASS	-	-	-	-	-	Del	-	D	214929316	214929318	1	63	752.042	-	-	1	1	1	-	-	./.	0	0	0	0	27	23	27	23	0	0	./.	8	6	8	8	33	20	33	20	8	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766723960	10	26431522	AC	A	660	PASS	MYO3A	CCDS7148.1	r.?	-	-	Del	intronic	D	26431522	26431528	1	42	592.953	-	-	5	1	1	MYO3A|CCDS7148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO3A|CCDS7148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	6	5	7	7	28	23	28	23	7	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766730717	10	43432785	CATCGC	CCA	387	PASS	-	-	-	-	-	Complex	-	DI	43432786	43432790	5	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	5	3	0	0	11	19	11	19	5	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766734774	10	57094384	AT	A	300	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	57094384	57094392	1	10	268.32	-	-	7	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	7	22	7	0	0	./.	4	1	5	1	26	8	26	8	5	1	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766735153	10	58221830	GA	G	420	PASS	-	-	-	-	-	Del	-	D	58221830	58221832	1	20	377.334	-	-	1	1	1	-	-	./.	0	0	0	0	25	11	25	11	0	0	./.	4	3	6	5	25	21	25	21	6	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766735982	10	60249293	TGTA	T	300	PASS	-	-	-	-	-	Del	-	D	60249293	60249299	3	12	265.912	-	-	1	1	1	-	-	./.	0	0	0	0	33	19	33	19	0	0	./.	2	3	3	3	23	19	23	19	3	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766737882	10	65986856	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	65986856	65986864	1	42	584.525	-	-	7	1	1	-	-	./.	0	0	0	0	29	23	30	23	0	0	./.	6	5	8	8	24	28	24	28	8	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766744462	10	84123752	G	GA	287	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	84123752	84123762	1	12	266.514	-	-	9	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	30	17	30	0	0	./.	2	3	2	3	23	35	24	35	2	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766756641	10	119026091	AT	A	389	PASS	SLC18A2	CCDS7599.1	r.?	-	-	Del	intronic	D	119026091	119026093	1	8	376.13	-	-	1	1	1	SLC18A2|CCDS7599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC18A2|CCDS7599.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	19	25	19	0	0	./.	0	7	3	9	19	23	19	23	3	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766758144	10	123069655	A	ACGT	387	PASS	-	-	-	-	-	Ins	-	I	123069655	123069657	3	21	416.789	-	-	0	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	6	2	8	2	36	20	36	20	8	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766760666	10	129663037	AG	A	300	PASS	-	-	-	-	-	Del	-	D	129663037	129663039	1	6	269.524	-	-	1	1	1	-	-	./.	0	0	0	0	32	30	32	30	0	0	./.	5	0	5	1	15	18	15	18	5	1	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766771717	11	25194203	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	25194203	25194207	1	6	266.84	-	-	3	1	-	-	-	./.	0	0	0	0	23	15	23	16	0	0	./.	5	0	5	0	18	27	18	27	5	0	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766773150	11	28766700	GC	G	600	PASS	-	-	-	-	-	Del	-	D	28766700	28766703	1	35	536.088	-	-	2	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	6	4	6	8	22	31	22	31	6	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766776660	11	38866643	GACTT	G	718	PASS	-	-	-	-	-	Del	-	D	38866643	38866655	4	44	701.611	-	-	2	1	1	-	-	./.	0	0	0	0	25	25	25	25	0	0	./.	10	3	10	3	24	26	24	26	10	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766788983	11	76472994	GCACCT	G	298	PASS	-	-	-	-	-	Del	-	D	76472994	76473002	5	15	323.82	-	-	1	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	2	4	2	4	20	26	20	26	2	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766793109	11	88791250	C	CA	480	PASS	GRM5	CCDS44694.1	r.?	-	-	Ins	intronic	I	88791250	88791260	1	25	426.944	-	-	9	1	1	GRM5|CCDS44694.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GRM5|CCDS44694.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	25	17	26	0	0	./.	4	4	7	5	35	36	35	36	7	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766793719	11	90573751	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	90573751	90573759	1	45	639.814	-	-	7	1	1	-	-	./.	0	0	0	0	22	31	22	32	0	0	./.	4	8	5	11	22	35	23	35	5	11	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766815429	12	15373277	G	GT	300	PASS	RERG	CCDS8673.1	r.?	-	-	Ins	intronic	I	15373277	15373287	1	12	261.567	-	-	9	1	1	RERG|CCDS8673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RERG|CCDS8673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	27	26	28	0	0	./.	2	3	2	3	32	25	33	25	2	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766828041	12	51634107	A	AT	300	PASS	DAZAP2	CCDS8809.1	r.?	-	-	Ins	intronic	I	51634107	51634115	1	10	266.384	-	-	7	1	1	DAZAP2|CCDS8809.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DAZAP2|CCDS8809.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	4	1	4	1	19	14	20	14	4	1	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766831683	12	62330901	CAAGGAACTAAAAA	C	290	PASS	FAM19A2	CCDS8962.1	r.?	-	-	Del	intronic	D	62330901	62330916	13	35	537.583	-	-	1	1	1	FAM19A2|CCDS8962.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM19A2|CCDS8962.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	25	24	25	0	0	./.	6	4	5	5	28	30	29	30	6	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766835739	12	74632708	AC	A	780	PASS	-	-	-	-	-	Del	-	D	74632708	74632712	1	44	699.581	-	-	3	1	1	-	-	./.	0	0	0	0	28	19	28	19	0	0	./.	10	3	13	4	43	20	43	20	13	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766838949	12	84381101	GGAAT	G	274	PASS	-	-	-	-	-	Del	-	D	84381101	84381106	4	12	322.189	-	-	1	1	1	-	-	./.	0	0	0	0	25	2	25	2	0	0	./.	1	5	1	5	15	19	15	19	1	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766844131	12	101995810	T	TA	600	PASS	MYBPC1	CCDS9083.1	r.?	-	-	Ins	intronic	I	101995810	101995819	1	35	533.971	-	-	8	1	1	MYBPC1|CCDS9083.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYBPC1|CCDS9083.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	15	31	16	0	0	./.	6	4	6	6	19	24	19	24	6	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766852189	12	127473114	TTC	T	300	PASS	AC078878.2	ENST00000512624	r.?	-	-	Del	intronic	D	127473114	127473130	2	12	269.996	-	-	7	1	1	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	16	21	16	0	0	./.	3	2	3	2	20	17	20	17	3	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766860530	13	31785695	T	TA	540	PASS	B3GALTL	CCDS9341.1	r.?	-	-	Ins	intronic	I	31785695	31785696	1	30	481.283	-	-	0	1	1	B3GALTL|CCDS9341.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	B3GALTL|CCDS9341.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	25	18	25	0	0	./.	5	4	7	6	27	19	27	20	7	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766861307	13	33918080	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	33918080	33918090	1	12	266.777	-	-	9	1	1	-	-	./.	0	0	0	0	25	14	26	14	0	0	./.	3	2	3	2	39	19	39	19	3	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766867460	13	50264566	A	AC	300	PASS	EBPL	CCDS9420.1	r.?	-	-	Ins	intronic	I	50264566	50264567	1	10	264.971	-	-	0	1	1	EBPL|CCDS9420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EBPL|CCDS9420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	14	10	0	0	./.	1	4	1	5	14	17	16	17	1	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766868388	13	52862549	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	52862549	52862554	2	10	270.39	-	-	2	1	1	-	-	./.	0	0	0	0	34	32	34	32	0	0	./.	1	4	3	4	24	32	24	32	3	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766873300	13	66299225	CTG	C	780	PASS	-	-	-	-	-	Del	-	D	66299225	66299229	2	50	703.014	-	-	1	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	4	9	5	11	22	34	22	34	5	11	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766874140	13	68860017	C	CTATA	389	PASS	-	-	-	-	-	Ins	-	I	68860017	68860033	4	14	361.688	-	-	7	1	-	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	6	2	8	34	30	35	30	2	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766875468	13	72280332	CT	C	300	PASS	DACH1	ENST00000305425	r.?	-	-	Del	intronic	D	72280332	72280335	1	12	269.186	-	-	2	1	1	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DACH1|ENST00000305425|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	23	9	23	0	0	./.	2	3	3	4	8	22	8	22	3	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766880368	13	85553581	ATTGT	A	298	PASS	-	-	-	-	-	Del	-	D	85553581	85553588	4	16	322.662	-	-	1	1	1	-	-	./.	0	0	0	0	28	19	28	19	0	0	./.	3	3	6	5	34	17	34	17	6	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766883264	13	93098194	C	CT	265	PASS	GPC5	CCDS9468.1	r.?	-	-	Ins	intronic	I	93098194	93098203	1	15	320.855	-	-	8	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	26	18	26	0	0	./.	2	4	5	5	16	23	16	23	5	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766891995	14	20420758	GA	G	540	PASS	-	-	-	-	-	Del	-	D	20420758	20420761	1	30	487.385	-	-	2	1	1	-	-	./.	0	0	0	0	29	27	29	27	0	0	./.	5	4	5	5	44	31	44	31	5	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766895456	14	29329024	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	29329024	29329034	1	10	264.749	-	-	9	1	1	-	-	./.	0	0	0	0	27	24	27	24	0	0	./.	1	4	1	4	22	29	22	30	1	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766902049	14	47658730	T	TA	300	PASS	MDGA2	CCDS41948.1	r.?	-	-	Ins	intronic	I	47658730	47658740	1	12	267.759	-	-	9	1	1	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	19	25	19	0	0	./.	3	2	3	2	44	33	44	33	3	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766924725	15	21914801	CCTCTT	C	449	PASS	-	-	-	-	-	Del	-	D	21914801	21914809	5	24	433.414	-	-	1	1	1	-	-	./.	0	0	0	0	59	65	59	65	0	0	./.	5	3	5	4	61	88	61	88	5	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766925787	15	24046006	TA	T	420	PASS	-	-	-	-	-	Del	-	D	24046006	24046014	1	18	379.237	-	-	7	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	2	5	3	6	8	16	8	16	3	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766929585	15	34523957	A	AT	509	PASS	SLC12A6	CCDS42011.1	r.5993_5994insa	c.?	p.?	Ins	3'UTR variant	I	34523957	34523965	1	28	465.917	-	-	7	1	1	SLC12A6|CCDS42011.1|r.5993_5994insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SLC12A6|CCDS42011.1|r.5993_5994insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	26	13	26	13	0	0	./.	6	3	7	4	29	7	29	7	7	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766931410	15	39704419	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	39704419	39704422	2	12	325.06	-	-	2	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	5	1	5	2	27	23	27	23	5	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766937755	15	57333999	CTTAG	C	389	PASS	TCF12	CCDS10159.1	r.?	-	-	Del	intronic	D	57333999	57334006	4	18	378.635	-	-	1	1	1	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	36	15	36	15	0	0	./.	2	5	5	6	23	28	23	28	5	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766939007	15	60322798	CAT	C	360	PASS	-	-	-	-	-	Del	-	D	60322798	60322801	2	12	325.06	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	5	1	6	2	23	15	23	15	6	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766941373	15	66169949	TG	T	300	PASS	RAB11A	CCDS10212.1	r.?	-	-	Del	intronic	D	66169949	66169951	1	12	270.884	-	-	1	1	1	RAB11A|CCDS10212.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB11A|CCDS10212.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	2	3	4	4	16	21	16	21	4	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766944459	15	74901050	AAG	A	780	PASS	CLK3	CCDS10265.1	r.?	-	-	Del	intronic	D	74901050	74901055	2	56	698.879	-	-	2	1	1	CLK3|CCDS10265.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CLK3|CCDS10265.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	7	6	8	9	20	26	20	26	8	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766961112	16	16567310	TAA	T	261	PASS	-	-	-	-	-	Del	-	D	16567310	16567314	2	10	487.635	-	-	3	1	1	-	-	./.	0	0	0	0	23	25	23	25	0	0	./.	9	0	9	0	31	26	31	26	9	0	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766966993	16	32465364	AC	A	277	PASS	-	-	-	-	-	Del	-	D	32465364	32465368	1	11	541.817	-	-	3	1	1	-	-	./.	0	0	0	0	23	46	23	46	0	0	./.	10	0	14	0	43	44	43	44	14	0	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766982966	17	1120112	AAT	A	569	PASS	-	-	-	-	-	Del	-	D	1120112	1120116	2	35	541.028	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	18	17	0	0	./.	4	6	4	10	24	22	29	22	4	10	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766995131	17	32363026	AT	A	255	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	32363026	32363030	1	18	374.926	-	-	3	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	2	5	7	8	15	29	15	29	7	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2766996468	17	36178146	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	36178146	36178156	1	12	319.559	-	-	9	1	1	-	-	./.	0	0	0	0	18	22	18	23	0	0	./.	1	5	1	6	21	26	21	26	1	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767009713	17	69105011	GT	G	480	PASS	-	-	-	-	-	Del	-	D	69105011	69105016	1	24	433.304	-	-	4	1	1	-	-	./.	0	0	0	0	33	19	33	19	0	0	./.	5	3	6	4	31	25	31	25	6	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767011483	17	73378655	ATAT	AT	418	PASS	GRB2	CCDS11721.1	r.?	-	-	Complex	intronic	DI	73378656	73378658	3	21	0	-	-	0	1	1	GRB2|CCDS11721.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	GRB2|CCDS11721.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	2	6	0	0	15	21	15	21	2	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767012430	17	75566522	GTGCATGGCGCGTGGGGCCTTCTC	G	377	PASS	-	-	-	-	-	Del	-	D	75566522	75566556	23	44	704.119	-	-	1	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	10	3	8	2	22	14	25	15	11	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767016543	18	4317804	GAAC	G	629	PASS	-	-	-	-	-	Del	-	D	4317804	4317813	3	42	594.179	-	-	2	1	1	-	-	./.	0	0	0	0	23	29	23	29	0	0	./.	5	6	5	8	19	24	19	24	5	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767032272	18	53071224	GTC	G	300	PASS	TCF4	CCDS42438.1	r.?	-	-	Del	intronic	D	53071224	53071242	2	10	269.698	-	-	8	1	1	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF4|CCDS42438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	1	4	1	5	22	36	22	36	1	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767037354	18	66549287	TA	T	420	PASS	CCDC102B	CCDS11996.2	r.?	-	-	Del	intronic	D	66549287	66549293	1	20	377.457	-	-	5	1	1	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC102B|CCDS11996.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	3	4	3	8	18	19	18	19	3	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767040646	18	75109591	GT	G	540	PASS	-	-	-	-	-	Del	-	D	75109591	75109593	1	28	487.625	-	-	1	1	1	-	-	./.	0	0	0	0	25	30	25	30	0	0	./.	6	3	6	5	21	10	21	10	6	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767052390	19	23446957	C	CA	480	PASS	ENSG00000213971	ENST00000397094	r.?	-	-	Ins	upstream	I	23446957	23446963	1	25	424.441	-	-	5	1	1	ENSG00000213971|ENST00000397094|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000213971|ENST00000397094|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	15	8	17	8	0	0	./.	4	4	6	6	19	20	19	20	6	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767055771	19	35453064	C	CA	840	PASS	ZNF792	CCDS12440.2	r.?	-	-	Ins	intronic	I	35453064	35453066	1	64	751.2	-	-	1	1	1	ZNF792|CCDS12440.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF792|CCDS12440.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	7	7	13	8	29	29	29	30	13	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767064675	19	56174897	TC	T	480	PASS	U2AF2	CCDS12933.1	r.?	-	-	Del	intronic	D	56174897	56174901	1	24	434.074	-	-	3	1	1	U2AF2|CCDS12933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	U2AF2|CCDS12933.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	5	3	6	4	16	17	16	17	6	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767066530	2	1589021	CG	C	480	PASS	-	-	-	-	-	Del	-	D	1589021	1589025	1	25	427.996	-	-	3	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	4	5	7	18	19	18	19	5	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767067832	2	6114078	C	CA	420	PASS	ENSG00000212983	ENST00000391666	r.?	-	-	Ins	downstream	I	6114078	6114085	1	14	371.862	-	-	6	1	1	ENSG00000212983|ENST00000391666|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000212983|ENST00000391666|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	28	12	28	12	0	0	./.	1	6	2	9	21	29	21	29	2	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767087536	2	65587319	CT	C	720	PASS	SPRED2	CCDS33211.1	r.?	-	-	Del	intronic	D	65587319	65587323	1	48	637.478	-	-	3	1	1	SPRED2|CCDS33211.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPRED2|CCDS33211.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	29	22	29	0	0	./.	7	5	9	6	25	19	25	19	9	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767100428	2	107339192	GA	G	540	PASS	-	-	-	-	-	Del	-	D	107339192	107339202	1	28	483.527	-	-	9	1	1	-	-	./.	0	0	0	0	20	15	23	19	0	0	./.	6	3	9	7	24	26	27	28	9	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767103321	2	116678097	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	116678097	116678104	1	12	317.535	-	-	6	1	-	-	-	./.	0	0	0	0	27	31	27	31	0	0	./.	5	1	7	11	35	27	35	27	7	11	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767104258	2	119651596	AG	A	300	PASS	-	-	-	-	-	Del	-	D	119651596	119651601	1	12	268.626	-	-	4	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	2	3	2	5	13	21	13	21	2	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767119937	2	164564831	AT	A	540	PASS	FIGN	CCDS2221.2	r.?	-	-	Del	intronic	D	164564831	164564837	1	30	483.527	-	-	5	1	1	FIGN|CCDS2221.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FIGN|CCDS2221.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	4	5	6	9	18	31	18	31	6	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767122977	2	172385500	TCTC	T	540	PASS	CYBRD1	CCDS2244.1	r.?	-	-	Del	intronic	D	172385500	172385506	3	30	483.527	-	-	1	1	1	CYBRD1|CCDS2244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYBRD1|CCDS2244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	27	14	27	0	0	./.	4	5	5	7	16	24	16	24	5	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767128816	2	189412488	AC	A	540	PASS	GULP1	CCDS2295.1	r.?	-	-	Del	intronic	D	189412488	189412490	1	24	482.925	-	-	1	1	1	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	34	30	34	0	0	./.	2	7	6	10	31	32	31	32	6	10	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767137864	2	214981781	TCAGA	T	480	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	214981781	214981788	4	24	429.802	-	-	1	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	26	30	26	0	0	./.	5	3	7	5	41	31	41	31	7	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767172030	21	10159639	GT	G	322	PASS	-	-	-	-	-	Del	-	D	10159639	10159646	1	12	597.032	-	-	6	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	11	0	13	0	214	2	214	2	13	0	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767210099	3	25603598	GT	G	360	PASS	RARB	CCDS2642.1	r.?	-	-	Del	intronic	D	25603598	25603601	1	15	322.323	-	-	2	1	1	RARB|CCDS2642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARB|CCDS2642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	4	2	7	3	16	24	16	24	7	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767210526	3	26931551	ATC	A	420	PASS	-	-	-	-	-	Del	-	D	26931551	26931571	2	18	376.144	-	-	9	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	5	2	5	3	26	30	26	30	5	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767241355	3	118782241	AT	A	420	PASS	IGSF11	CCDS2983.1	r.?	-	-	Del	intronic	D	118782241	118782246	1	18	376.746	-	-	4	1	1	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	20	31	20	0	0	./.	2	5	2	6	24	25	24	25	2	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767243448	3	124687728	AAC	A	840	PASS	HEG1	CCDS46898.1	r.5980_5981delGU	c.?	p.?	Del	3'UTR variant	D	124687728	124687732	2	63	753.493	-	-	1	1	1	HEG1|CCDS46898.1|r.5980_5981delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	HEG1|CCDS46898.1|r.5980_5981delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	27	20	27	20	0	0	./.	6	8	6	8	18	31	18	31	6	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767256122	3	163170877	CA	C	720	PASS	-	-	-	-	-	Del	-	D	163170877	163170879	1	45	645.851	-	-	1	1	1	-	-	./.	0	0	0	0	3	23	3	23	0	0	./.	4	8	5	9	18	23	18	23	5	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767259000	3	171821161	CG	C	600	PASS	FNDC3B	CCDS3217.1	r.?	-	-	Del	intronic	D	171821161	171821164	1	32	538.209	-	-	2	1	1	FNDC3B|CCDS3217.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FNDC3B|CCDS3217.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	25	28	25	0	0	./.	3	7	6	9	24	28	24	28	6	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767266432	3	192370325	C	CT	600	PASS	FGF12	CCDS46983.1	r.?	-	-	Ins	intronic	I	192370325	192370328	1	27	532.188	-	-	2	1	1	FGF12|CCDS46983.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF12|CCDS46983.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	28	23	28	0	0	./.	8	2	10	2	26	19	26	21	10	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767289933	4	61118003	AT	A	360	PASS	-	-	-	-	-	Del	-	D	61118003	61118007	1	16	322.737	-	-	3	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	3	3	6	3	23	16	23	16	6	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767294169	4	72145014	A	AT	300	PASS	SLC4A4	CCDS47071.1	r.?	-	-	Ins	intronic	I	72145014	72145024	1	12	265.938	-	-	9	1	1	SLC4A4|CCDS47071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC4A4|CCDS47071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	29	23	29	0	0	./.	3	2	3	2	35	21	35	21	3	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767294303	4	72556902	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	72556902	72556911	1	14	369.302	-	-	8	1	1	-	-	./.	0	0	0	0	34	7	34	7	0	0	./.	6	1	9	2	29	17	29	17	10	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767309098	4	117793827	AG	A	360	PASS	-	-	-	-	-	Del	-	D	117793827	117793829	1	15	322.737	-	-	1	1	1	-	-	./.	0	0	0	0	29	8	29	8	0	0	./.	2	4	3	8	26	31	26	31	3	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767312347	4	126558719	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	126558719	126558726	1	20	370.506	-	-	6	1	1	-	-	./.	0	0	0	0	35	21	35	21	0	0	./.	4	3	8	6	32	29	33	29	8	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767314617	4	133002896	A	AT	449	PASS	-	-	-	-	-	Ins	-	I	133002896	133002906	1	24	418.878	-	-	9	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	5	3	7	2	30	17	30	17	7	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767332502	4	182187201	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	182187201	182187204	1	35	531.875	-	-	2	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	6	4	9	6	44	24	44	25	9	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767340933	5	9933985	CA	C	540	PASS	-	-	-	-	-	Del	-	D	9933985	9933989	1	30	484.853	-	-	3	1	1	-	-	./.	0	0	0	0	17	31	17	31	0	0	./.	5	4	5	6	29	27	29	27	5	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767346854	5	25753487	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	25753487	25753495	1	16	319.021	-	-	7	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	3	3	8	5	35	31	35	31	8	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767348543	5	29887066	AG	A	480	PASS	-	-	-	-	-	Del	-	D	29887066	29887068	1	24	430.98	-	-	1	1	1	-	-	./.	0	0	0	0	17	31	17	31	0	0	./.	3	5	3	7	18	21	18	21	3	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767355853	5	53928133	ATGCCAAGACAGAGCCC	A	406	PASS	-	-	-	-	-	Del	-	D	53928133	53928152	16	48	754.215	-	-	1	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	3	11	3	10	32	27	32	28	3	11	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767358422	5	61261756	GT	G	660	PASS	-	-	-	-	-	Del	-	D	61261756	61261760	1	42	591.393	-	-	3	1	1	-	-	./.	0	0	0	0	24	25	24	25	0	0	./.	5	6	7	8	30	28	30	28	7	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767361531	5	71250789	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	71250789	71250805	2	12	265.75	-	-	7	1	1	-	-	./.	0	0	0	0	24	21	24	21	0	0	./.	2	3	2	3	19	36	19	36	2	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767369294	5	94219912	ATT	A	540	PASS	MCTP1	CCDS47247.1	r.?	-	-	Del	intronic	D	94219912	94219916	2	18	484.853	-	-	3	1	1	MCTP1|CCDS47247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP1|CCDS47247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	25	27	25	0	0	./.	1	8	6	15	23	35	23	35	6	15	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767371095	5	99446253	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	99446253	99446263	1	64	740.368	-	-	9	1	1	-	-	./.	0	0	0	0	19	28	20	28	0	0	./.	7	7	10	9	38	36	38	36	10	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767379162	5	123772817	AG	A	660	PASS	-	-	-	-	-	Del	-	D	123772817	123772821	1	40	592.598	-	-	3	1	1	-	-	./.	0	0	0	0	28	16	28	16	0	0	./.	7	4	7	6	32	19	32	19	7	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767390179	5	158122704	AC	A	600	PASS	EBF1	CCDS4343.1	r.?	-	-	Del	downstream	D	158122704	158122707	1	35	536.919	-	-	2	1	1	EBF1|CCDS4343.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	EBF1|CCDS4343.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	17	21	17	21	0	0	./.	6	4	11	9	31	25	31	25	11	9	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767391333	5	161638116	A	AAATT	420	PASS	-	-	-	-	-	Ins	-	I	161638116	161638139	4	20	360.25	-	-	5	1	-	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	3	4	4	5	24	19	25	19	4	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767394306	5	170316065	CT	C	360	PASS	RANBP17	CCDS34287.1	r.?	-	-	Del	intronic	D	170316065	170316075	1	15	323.235	-	-	9	1	1	RANBP17|CCDS34287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP17|CCDS34287.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	23	33	23	0	0	./.	4	2	7	5	27	21	27	21	7	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767418057	6	50255238	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	50255238	50255245	1	48	638.646	-	-	6	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	5	7	7	8	29	25	29	25	7	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767432004	6	90826311	AT	A	300	PASS	BACH2	CCDS5026.1	r.?	-	-	Del	intronic	D	90826311	90826315	1	10	266.354	-	-	3	1	1	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BACH2|CCDS5026.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	21	28	21	0	0	./.	4	1	8	4	25	28	25	28	8	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767436304	6	104400129	CA	C	360	PASS	-	-	-	-	-	Del	-	D	104400129	104400138	1	16	323.237	-	-	8	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	3	3	3	4	21	23	21	23	3	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767436445	6	104775115	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	104775115	104775122	1	32	532.707	-	-	6	1	1	-	-	./.	0	0	0	0	26	29	26	30	0	0	./.	7	3	8	6	30	37	30	42	8	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767444468	6	128477626	AAG	A	300	PASS	PTPRK	CCDS47473.1	r.?	-	-	Del	intronic	D	128477626	128477642	2	12	268.762	-	-	7	1	1	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRK|CCDS47473.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	2	3	2	3	26	30	26	30	2	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767444628	6	128920535	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	128920535	128920544	1	42	585.376	-	-	8	1	1	-	-	./.	0	0	0	0	22	20	23	20	0	0	./.	5	6	8	7	22	26	22	27	8	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767448380	6	141071635	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	141071635	141071653	2	12	269.364	-	-	8	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	2	3	2	4	18	28	18	28	2	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767451863	6	151970756	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	151970756	151970764	1	15	319.624	-	-	7	1	1	-	-	./.	0	0	0	0	35	24	35	24	0	0	./.	4	2	5	3	28	15	28	15	5	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767457143	6	166266085	A	AG	900	PASS	-	-	-	-	-	Ins	-	I	166266085	166266088	1	72	798.459	-	-	2	1	1	-	-	./.	0	0	0	0	21	31	21	32	0	0	./.	8	7	10	8	27	23	27	24	10	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767459346	7	1840604	CTG	C	360	PASS	-	-	-	-	-	Del	-	D	1840604	1840613	2	16	323.371	-	-	4	1	1	-	-	./.	0	0	0	0	26	18	26	18	0	0	./.	3	3	4	3	20	12	20	12	4	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767465225	7	17169601	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	17169601	17169610	1	25	422.733	-	-	8	1	1	-	-	./.	0	0	0	0	24	29	24	29	0	0	./.	4	4	4	5	33	31	33	32	4	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767466746	7	21562306	TATC	T	658	PASS	-	-	-	-	-	Del	-	D	21562306	21562312	3	45	646.743	-	-	1	1	1	-	-	./.	0	0	0	0	16	26	16	26	0	0	./.	4	8	6	10	11	33	11	33	6	10	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767470236	7	31575047	CAGT	C	658	PASS	CCDC129	CCDS5435.2	r.?	-	-	Del	intronic	D	31575047	31575053	3	45	646.743	-	-	1	1	1	CCDC129|CCDS5435.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC129|CCDS5435.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	4	8	6	10	20	18	20	18	6	10	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767470312	7	31773455	AC	A	480	PASS	-	-	-	-	-	Del	-	D	31773455	31773457	1	16	428.754	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	7	1	9	3	25	16	25	16	9	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767472264	7	37003273	CA	C	420	PASS	ELMO1	CCDS5449.1	r.?	-	-	Del	intronic	D	37003273	37003279	1	14	377.267	-	-	5	1	1	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELMO1|CCDS5449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	6	1	9	3	23	7	23	7	9	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767484351	7	69413587	T	TA	269	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	69413587	69413588	1	10	266.466	-	-	0	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	19	0	0	./.	1	4	1	7	7	21	8	23	1	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767497144	7	106035055	AT	A	480	PASS	-	-	-	-	-	Del	-	D	106035055	106035061	1	24	426.948	-	-	5	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	3	5	3	7	26	21	26	21	3	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767507143	7	135981374	TAC	T	389	PASS	-	-	-	-	-	Del	-	D	135981374	135981382	2	14	377.267	-	-	3	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	6	1	7	2	31	17	31	17	7	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767513706	7	153711770	GA	G	300	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	153711770	153711780	1	6	269.476	-	-	9	1	-	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	5	0	7	4	24	16	24	16	7	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767517232	8	4246260	GA	G	360	PASS	-	-	-	-	-	Del	-	D	4246260	4246267	1	16	320.793	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	3	5	6	24	17	24	17	5	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767522999	8	19099675	GGGGA	G	540	PASS	-	-	-	-	-	Del	-	D	19099675	19099680	4	28	485.705	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	6	3	6	13	37	13	37	3	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767541125	8	77008150	AT	A	749	PASS	-	-	-	-	-	Del	-	D	77008150	77008159	1	54	701.574	-	-	8	1	1	-	-	./.	0	0	0	0	28	37	28	37	0	0	./.	8	5	10	6	35	27	35	27	10	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767541206	8	77251150	A	AAC	329	PASS	-	-	-	-	-	Ins	-	I	77251150	77251163	2	15	316.579	-	-	6	1	-	-	-	./.	0	0	0	0	30	22	31	23	0	0	./.	4	2	7	3	35	17	35	18	7	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767549573	8	103589346	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	103589346	103589349	2	12	268.632	-	-	1	1	1	-	-	./.	0	0	0	0	13	27	13	27	0	0	./.	3	2	3	4	11	26	11	26	3	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767552375	8	112133286	TA	T	600	PASS	-	-	-	-	-	Del	-	D	112133286	112133288	1	27	539.672	-	-	1	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	8	2	10	4	29	29	29	29	10	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767552910	8	113717980	TA	T	660	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	113717980	113717987	1	40	593.639	-	-	6	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	21	29	21	0	0	./.	7	4	9	5	36	20	36	20	9	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767553556	8	115578620	AC	A	780	PASS	-	-	-	-	-	Del	-	D	115578620	115578624	1	56	699.166	-	-	3	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	7	6	9	10	29	34	29	34	9	10	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767555821	8	122658368	TC	T	420	PASS	HAS2	CCDS6335.1	r.?	-	-	Del	upstream	D	122658368	122658370	1	20	372.954	-	-	1	1	1	HAS2|CCDS6335.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HAS2|CCDS6335.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	8	16	8	0	0	./.	4	3	6	6	26	19	26	19	6	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767566363	9	8328376	CGA	C	540	PASS	PTPRD	CCDS43786.1	r.?	-	-	Del	intronic	D	8328376	8328383	2	28	485.712	-	-	3	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	6	3	6	4	27	22	27	22	6	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767567191	9	10648350	GTA	G	300	PASS	-	-	-	-	-	Del	-	D	10648350	10648365	2	12	270.174	-	-	7	1	1	-	-	./.	0	0	0	0	17	27	17	27	0	0	./.	3	2	4	2	30	25	30	25	4	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767570951	9	20985858	TA	T	660	PASS	KIAA1797	CCDS34993.1	r.?	-	-	Del	intronic	D	20985858	20985864	1	40	593.781	-	-	5	1	1	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1797|CCDS34993.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	26	19	26	0	0	./.	7	4	12	5	35	19	35	19	12	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767572522	9	26554232	AT	A	720	PASS	-	-	-	-	-	Del	-	D	26554232	26554234	1	45	645.408	-	-	1	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	8	4	11	4	30	13	30	13	11	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767581545	9	73400292	CATTGA	C	389	PASS	TRPM3	CCDS43835.1	r.?	-	-	Del	intronic	D	73400292	73400300	5	8	376.438	-	-	1	1	1	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM3|CCDS43835.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	27	31	27	0	0	./.	0	7	0	7	5	27	5	27	0	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767588160	9	92458354	ACTAT	A	569	PASS	-	-	-	-	-	Del	-	D	92458354	92458363	4	35	534.93	-	-	2	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	4	9	4	29	20	29	20	9	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767595040	9	113348772	CA	C	480	PASS	-	-	-	-	-	Del	-	D	113348772	113348780	1	24	432.279	-	-	7	1	1	-	-	./.	0	0	0	0	31	18	31	18	0	0	./.	3	5	3	6	19	19	19	19	3	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767601638	9	131317161	G	GT	569	PASS	SPTAN1	CCDS48036.1	r.?	-	-	Ins	intronic	I	131317161	131317163	1	32	530.716	-	-	1	1	1	SPTAN1|CCDS48036.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SPTAN1|CCDS48036.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	7	4	8	19	21	19	21	4	8	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767604595	9	139220251	TCCC	T	389	PASS	GPSM1	CCDS48055.1	r.?	-	-	Del	upstream	D	139220251	139220257	3	20	377.642	-	-	5	1	1	GPSM1|CCDS48055.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	GPSM1|CCDS48055.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	19	29	19	29	0	0	./.	4	3	6	5	22	19	22	19	6	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767605076	9	140829558	C	CT	329	PASS	CACNA1B	ENST00000371372	r.?	-	-	Ins	intronic	I	140829558	140829567	1	15	320.597	-	-	8	1	1	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNA1B|ENST00000371372|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	34	29	34	0	0	./.	4	2	4	2	31	24	31	24	4	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767610232	X	19648405	G	GA	420	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Ins	intronic	I	19648405	19648412	1	18	374.291	-	-	6	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	5	2	8	3	26	11	26	11	8	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767614451	X	35972108	G	GA	300	PASS	CXorf22	CCDS14237.2	r.?	-	-	Ins	intronic	I	35972108	35972118	1	12	266.749	-	-	9	1	1	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	17	21	18	0	0	./.	3	2	3	2	33	21	33	22	3	2	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767617980	X	50550606	TC	T	540	PASS	SHROOM4	CCDS35277.1	r.?	-	-	Del	intronic	D	50550606	50550608	1	30	486.65	-	-	1	1	1	SHROOM4|CCDS35277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHROOM4|CCDS35277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	24	18	24	0	0	./.	5	4	6	7	16	28	16	28	6	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767619328	X	56810500	TG	T	660	PASS	-	-	-	-	-	Del	-	D	56810500	56810506	1	40	592.988	-	-	5	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	7	4	8	4	24	23	24	23	8	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767621030	X	68918505	A	AT	540	PASS	EDA	CCDS14394.1	r.?	-	-	Ins	intronic	I	68918505	68918514	1	30	481.231	-	-	8	1	1	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EDA|CCDS14394.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	16	29	16	0	0	./.	5	4	5	4	24	21	24	21	5	4	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767621782	X	71417470	AT	A	480	PASS	PIN4	CCDS14417.1	r.598delU	c.?	p.?	Del	3'UTR variant	D	71417470	71417476	1	21	432.577	-	-	5	1	1	PIN4|CCDS14417.1|r.598delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	PIN4|CCDS14417.1|r.598delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	24	15	24	0	0	./.	6	2	10	3	20	17	20	17	10	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767621962	X	72387613	AAAGAG	A	565	PASS	-	-	-	-	-	Del	-	D	72387613	72387622	5	48	648.264	-	-	1	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	5	7	5	7	23	30	23	30	5	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767622075	X	72911242	GC	G	300	PASS	-	-	-	-	-	Del	-	D	72911242	72911245	1	12	270.361	-	-	2	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	2	3	2	6	19	20	19	20	2	6	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767623232	X	77587262	AAAAC	A	300	PASS	CYSLTR1	CCDS14439.1	r.?	-	-	Del	upstream	D	77587262	77587278	4	10	270.361	-	-	3	1	1	CYSLTR1|CCDS14439.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CYSLTR1|CCDS14439.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	25	19	25	19	0	0	./.	4	1	5	3	32	25	32	25	5	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767625374	X	85542987	A	AT	780	PASS	DACH2	CCDS48140.1	r.?	-	-	Ins	intronic	I	85542987	85542994	1	56	695.112	-	-	6	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	33	26	33	0	0	./.	7	6	9	7	28	30	28	31	9	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767625410	X	85640578	GT	G	480	PASS	DACH2	CCDS48140.1	r.?	-	-	Del	intronic	D	85640578	85640581	1	21	432.577	-	-	2	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	6	2	9	3	25	11	25	11	9	3	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767629901	X	102799252	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	102799252	102799261	1	24	427.159	-	-	8	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	5	3	9	7	25	32	25	32	9	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767631201	X	108904734	C	CA	480	PASS	ACSL4	CCDS14548.1	r.?	-	-	Ins	intronic	I	108904734	108904741	1	25	426.557	-	-	6	1	1	ACSL4|CCDS14548.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACSL4|CCDS14548.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	24	29	24	0	0	./.	4	4	4	5	21	21	21	21	4	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767633764	X	118228583	CTG	C	600	PASS	KIAA1210	CCDS48156.1	r.?	-	-	Del	intronic	D	118228583	118228589	2	32	540.722	-	-	2	1	1	KIAA1210|CCDS48156.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1210|CCDS48156.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	7	3	7	7	26	18	26	18	7	7	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767635593	X	124218717	TA	T	420	PASS	-	-	-	-	-	Del	-	D	124218717	124218720	1	20	378.505	-	-	2	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	4	3	8	5	19	29	19	29	8	5	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767639587	X	140218812	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	140218812	140218822	1	10	266.147	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	4	1	4	1	20	19	21	19	4	1	1	1	1	1	1	1	1	1
2816293	PD18777a	PD18777b	2767641506	X	146752052	AG	A	960	PASS	-	-	-	-	-	Del	-	D	146752052	146752059	1	80	863.349	-	-	6	1	1	-	-	./.	0	0	0	0	27	18	27	18	0	0	./.	9	7	10	9	34	22	34	22	10	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771383598	1	5730575	TTTAAACACTTGATACG	TTAAACACTTGACTCA	394	PASS	ENSG00000236142	ENST00000427662	r.?	-	-	Complex	intronic	DI	5730576	5730591	16	64	0	-	-	0	1	1	ENSG00000236142|ENST00000427662|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ENSG00000236142|ENST00000427662|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	39	63	39	63	0	0	./.	7	7	0	0	156	157	156	157	7	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771385801	1	10438136	TGAA	T	629	PASS	KIF1B	CCDS111.1	r.?	-	-	Del	downstream	D	10438136	10438142	3	42	589.959	-	-	1	1	1	KIF1B|CCDS111.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	KIF1B|ENST00000353409|r.7195_7197delGAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	15	20	15	20	0	0	./.	5	6	6	7	21	27	21	27	6	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771390800	1	21365373	A	AT	720	PASS	EIF4G3	CCDS214.1	r.?	-	-	Ins	intronic	I	21365373	21365383	1	48	628.65	-	-	9	1	1	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	EIF4G3|CCDS214.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	16	25	16	0	0	./.	7	5	9	5	30	27	31	27	9	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771395520	1	32811285	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	32811285	32811288	1	40	562.265	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	7	8	8	24	16	24	17	8	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771401741	1	52108472	TGGGAAATGAGAGAGGGTTTTATTATCCTTCCAGAC	T	261	PASS	OSBPL9	CCDS44145.1	r.?	-	-	Del	intronic	D	52108472	52108508	35	30	483.679	-	-	1	1	1	OSBPL9|CCDS44145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBPL9|CCDS44145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	5	2	3	19	21	21	23	4	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771412601	1	84546443	ACAATCATTCCCTTTCAAAG	A	290	PASS	PRKACB	CCDS691.1	r.?	-	-	Del	intronic	D	84546443	84546463	19	35	536.819	-	-	1	1	1	PRKACB|CCDS691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKACB|CCDS691.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	6	4	5	3	33	16	34	17	6	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771413569	1	87254357	AT	A	480	PASS	ENSG00000183291	ENST00000499679	r.?	-	-	Del	intronic	D	87254357	87254366	1	21	429.937	-	-	8	1	1	ENSG00000183291|ENST00000499679|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ENSG00000183291|ENST00000499679|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	2	10	4	23	27	23	27	10	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771414525	1	90288008	A	AT	420	PASS	LRRC8D	CCDS726.1	r.?	-	-	Ins	intronic	I	90288008	90288016	1	20	370.776	-	-	7	1	1	LRRC8D|CCDS726.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LRRC8D|CCDS726.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	23	18	24	0	0	./.	4	3	6	4	28	30	28	30	6	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771421403	1	109962270	CA	C	329	PASS	PSMA5	CCDS799.1	r.?	-	-	Del	intronic	D	109962270	109962276	1	15	318.238	-	-	5	1	1	PSMA5|CCDS799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMA5|CCDS799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	6	5	18	24	18	24	6	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771427587	1	144837006	GTTAT	G	303	PASS	-	-	-	-	-	Del	-	D	144837006	144837015	4	24	643.702	-	-	2	1	1	-	-	./.	0	0	0	0	17	28	17	28	0	0	./.	1	11	1	16	35	85	35	85	1	16	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771431423	1	155104144	C	CT	540	PASS	EFNA1	CCDS1091.1	r.?	-	-	Ins	intronic	I	155104144	155104151	1	28	477.057	-	-	6	1	1	EFNA1|CCDS1091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EFNA1|CCDS1091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	24	14	24	0	0	./.	6	3	9	5	23	28	23	28	9	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771433652	1	161497181	G	GGAT	362	PASS	HSPA7	CCDS1231.1	r.?	-	-	Ins	downstream	I	161497181	161497186	3	11	516.951	-	-	1	1	1	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HSPA7|CCDS1231.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	5	9	5	9	0	0	./.	10	0	12	0	38	31	38	31	12	0	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771441686	1	184355710	CG	C	389	PASS	C1orf21	CCDS1362.1	r.?	-	-	Del	upstream	D	184355710	184355714	1	20	372.583	-	-	3	1	1	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C1orf21|CCDS1362.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	13	17	13	0	0	./.	3	4	3	4	16	22	16	22	3	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771442058	1	185798431	AT	A	269	PASS	HMCN1	CCDS30956.1	r.?	-	-	Del	intronic	D	185798431	185798433	1	12	250.649	-	-	1	1	1	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN1|CCDS30956.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	3	3	23	25	23	25	3	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771449804	1	208112946	GA	G	300	PASS	-	-	-	-	-	Del	-	D	208112946	208112953	1	12	268.711	-	-	6	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	2	3	5	6	29	24	29	24	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771463152	1	242960357	CT	C	360	PASS	-	-	-	-	-	Del	-	D	242960357	242960361	1	16	316.432	-	-	3	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	3	3	6	6	22	20	22	20	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771469252	10	8115896	C	CA	360	PASS	GATA3	CCDS31143.1	r.1813_1814insa	c.1245_1246insA	p.M416fs*92	Ins	frameshift	I	8115896	8115898	1	15	317.389	-	-	1	1	1	GATA3|CCDS31143.1|r.1813_1814insa|c.1245_1246insA|p.M416fs*92|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	GATA3|CCDS31143.1|r.1813_1814insa|c.1245_1246insA|p.M416fs*92|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	24	14	24	14	0	0	./.	4	2	6	3	22	18	23	18	6	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771469670	10	8971352	GAAATTAGAA	G	319	PASS	-	-	-	-	-	Del	-	D	8971352	8971363	9	42	592.918	-	-	1	1	1	-	-	./.	0	0	0	0	15	27	15	27	0	0	./.	5	6	5	7	17	17	17	17	5	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771485266	10	50592289	G	GA	540	PASS	DRGX	CCDS44388.1	r.?	-	-	Ins	intronic	I	50592289	50592296	1	18	479.696	-	-	6	1	1	DRGX|CCDS44388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DRGX|CCDS44388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	25	29	25	0	0	./.	8	1	10	5	25	22	25	22	10	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771490884	10	66509935	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	66509935	66509943	1	36	532.995	-	-	7	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	5	5	7	5	28	17	28	17	7	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771498804	10	87458251	A	AT	300	PASS	GRID1	CCDS31236.1	r.?	-	-	Ins	intronic	I	87458251	87458260	1	10	266.498	-	-	8	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	4	1	7	4	33	28	33	28	7	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771499154	10	88597988	A	AAAT	658	PASS	BMPR1A	CCDS7378.1	r.?	-	-	Ins	intronic	I	88597988	88598007	3	45	624.543	-	-	6	1	1	BMPR1A|CCDS7378.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BMPR1A|CCDS7378.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	8	4	10	7	27	26	27	26	10	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771504952	10	104528844	T	TGATC	325	PASS	C10orf26	CCDS44473.1	r.?	-	-	Ins	intronic	I	104528844	104528849	4	25	410.141	-	-	1	1	1	C10orf26|CCDS44473.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf26|CCDS44473.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	4	4	4	4	19	23	19	24	4	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771510828	10	122057220	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	122057220	122057222	1	16	423.386	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	21	0	0	./.	1	7	1	9	15	24	15	24	1	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771516602	11	2565113	CTCCTT	C	507	PASS	KCNQ1	CCDS7736.1	r.?	-	-	Del	intronic	D	2565113	2565120	5	27	539.978	-	-	1	1	1	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	19	5	19	0	0	./.	2	8	3	8	16	21	16	21	3	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771528064	11	32804248	AATT	A	540	PASS	CCDC73	CCDS41630.1	r.?	-	-	Del	intronic	D	32804248	32804255	3	30	485.98	-	-	2	1	1	CCDC73|CCDS41630.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC73|CCDS41630.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	5	4	6	4	28	20	28	20	6	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771534513	11	49325679	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	49325679	49325685	1	12	320.375	-	-	5	1	1	-	-	./.	0	0	0	0	11	20	11	20	0	0	./.	1	5	3	6	17	28	17	28	3	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771535558	11	56517690	AT	A	420	PASS	-	-	-	-	-	Del	-	D	56517690	56517692	1	20	373.77	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	3	9	4	22	14	22	14	9	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771536393	11	59181445	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	59181445	59181454	1	42	580.129	-	-	8	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	5	6	7	6	24	28	24	28	7	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771570387	12	15404319	CTT	C	600	PASS	-	-	-	-	-	Del	-	D	15404319	15404324	2	35	539.996	-	-	4	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	6	4	6	5	22	25	22	25	6	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771585929	12	59054093	G	GC	360	PASS	-	-	-	-	-	Ins	-	I	59054093	59054101	1	15	319.181	-	-	7	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	4	2	6	3	19	22	19	22	6	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771608506	12	120975323	C	CG	300	PASS	RNF10	CCDS9201.1	r.?	-	-	Ins	intronic	I	120975323	120975330	1	12	265.784	-	-	6	1	1	RNF10|CCDS9201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF10|CCDS9201.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	3	7	18	27	18	27	3	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771613149	12	131680358	AG	A	581	PASS	ENSG00000204603	ENST00000376678	r.?	-	-	Del	intronic	D	131680358	131680363	1	40	592.792	-	-	4	1	1	ENSG00000204603|ENST00000376678|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000204603|ENST00000376678|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	7	4	9	4	33	13	33	13	9	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771618378	13	28371007	AC	A	660	PASS	GSX1	CCDS9326.1	r.?	-	-	Del	downstream	D	28371007	28371009	1	42	593.849	-	-	1	1	1	GSX1|CCDS9326.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GSX1|CCDS9326.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	16	17	16	0	0	./.	5	6	5	6	24	22	24	22	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771622929	13	40745586	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	40745586	40745595	1	15	321.291	-	-	8	1	1	-	-	./.	0	0	0	0	29	31	29	31	0	0	./.	2	4	4	6	27	26	28	26	4	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771626045	13	49833996	A	AC	300	PASS	CDADC1	CCDS9415.1	r.?	-	-	Ins	intronic	I	49833996	49833998	1	12	265.334	-	-	1	1	1	CDADC1|CCDS9415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDADC1|CCDS9415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	26	10	26	0	0	./.	2	3	3	3	22	34	22	34	3	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771640929	13	95396428	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	95396428	95396430	1	30	481.936	-	-	1	1	1	-	-	./.	0	0	0	0	12	23	12	23	0	0	./.	5	4	6	6	28	28	28	28	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771644536	13	104748998	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	104748998	104749007	1	24	427.183	-	-	8	1	1	-	-	./.	0	0	0	0	21	24	21	25	0	0	./.	3	5	4	6	20	28	20	28	4	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771645147	13	106331907	TA	T	420	PASS	-	-	-	-	-	Del	-	D	106331907	106331910	1	20	379.054	-	-	2	1	1	-	-	./.	0	0	0	0	11	23	11	23	0	0	./.	3	4	5	6	20	25	20	25	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771647395	13	112215657	TCCCTC	T	269	PASS	-	-	-	-	-	Del	-	D	112215657	112215674	5	6	268.946	-	-	3	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	0	5	1	0	21	20	21	25	1	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771654146	14	34165425	AC	A	720	PASS	NPAS3	CCDS9645.1	r.?	-	-	Del	intronic	D	34165425	34165428	1	48	649.759	-	-	2	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	7	5	9	6	26	21	26	21	9	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771659654	14	49798418	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	49798418	49798427	1	55	750.326	-	-	8	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	10	4	11	6	22	26	22	26	11	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771660329	14	50984347	AT	A	480	PASS	MAP4K5	ENST00000013125	r.?	-	-	Del	intronic	D	50984347	50984349	1	21	422.135	-	-	1	1	1	MAP4K5|ENST00000013125|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP4K5|ENST00000013125|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	6	2	10	5	24	19	24	19	10	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771666631	14	70006992	CACAA	C	687	PASS	-	-	-	-	-	Del	-	D	70006992	70007001	4	50	704.558	-	-	2	1	1	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	9	4	11	5	37	19	37	19	11	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771677085	14	99444133	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	99444133	99444141	1	24	427.554	-	-	7	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	5	3	5	5	22	21	22	22	5	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771687246	15	38288132	CT	C	540	PASS	-	-	-	-	-	Del	-	D	38288132	38288135	1	28	487.828	-	-	2	1	1	-	-	./.	0	0	0	0	23	25	23	25	0	0	./.	6	3	6	6	18	24	18	24	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771702940	15	79412372	CACTT	C	449	PASS	-	-	-	-	-	Del	-	D	79412372	79412380	4	24	433.023	-	-	1	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	5	3	6	4	20	29	20	29	6	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771709165	15	96922579	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	96922579	96922589	1	12	268.005	-	-	9	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	2	3	5	6	28	20	28	20	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771709515	15	97820060	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	97820060	97820070	1	12	268.005	-	-	9	1	1	-	-	./.	0	0	0	0	12	15	13	15	0	0	./.	3	2	3	2	34	24	34	24	3	2	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771710170	15	99271169	TC	T	360	PASS	IGF1R	CCDS10378.1	r.?	-	-	Del	intronic	D	99271169	99271174	1	15	325.219	-	-	4	1	1	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGF1R|CCDS10378.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	2	4	3	6	12	32	12	32	3	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771710433	15	99890927	TC	T	660	PASS	LRRC28	CCDS10380.1	r.?	-	-	Del	intronic	D	99890927	99890930	1	36	596.235	-	-	2	1	1	LRRC28|CCDS10380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRC28|CCDS10380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	28	13	28	0	0	./.	8	3	10	4	23	24	23	24	10	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771710965	15	101394123	GC	G	360	PASS	AC015712.1	ENST00000431060	r.?	-	-	Del	intronic	D	101394123	101394129	1	15	325.219	-	-	5	1	1	AC015712.1|ENST00000431060|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC015712.1|ENST00000431060|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	4	4	5	19	25	19	25	4	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771714350	16	7108573	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	7108573	7108592	2	6	266.464	-	-	9	1	-	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	0	5	0	5	16	23	16	23	0	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771717221	16	13461509	GC	G	420	PASS	-	-	-	-	-	Del	-	D	13461509	13461511	1	18	377.144	-	-	1	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	2	5	4	5	9	19	9	19	4	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771719135	16	18989036	GA	G	300	PASS	-	-	-	-	-	Del	-	D	18989036	18989043	1	12	270.679	-	-	6	1	1	-	-	./.	0	0	0	0	27	17	27	17	0	0	./.	3	2	3	3	26	30	26	30	3	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771723671	16	30666120	TC	T	269	PASS	PRR14	CCDS10687.1	r.1088delC	c.830delC	p.P279fs*2	Del	frameshift	D	30666120	30666128	1	12	267.066	-	-	7	1	1	PRR14|CCDS10687.1|r.1088delC|c.830delC|p.P279fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PRR14|CCDS10687.1|r.1088delC|c.830delC|p.P279fs*2|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	19	11	19	0	0	./.	2	3	4	6	23	22	23	22	4	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771737498	16	74098589	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	74098589	74098597	1	40	588.871	-	-	7	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	7	4	10	6	26	19	26	20	10	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771737744	16	74612907	GAAC	G	809	PASS	GLG1	CCDS45527.1	r.?	-	-	Del	intronic	D	74612907	74612916	3	63	757.9	-	-	2	1	1	GLG1|CCDS45527.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLG1|CCDS45527.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	6	8	7	8	30	28	30	28	7	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771738591	16	76705689	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	76705689	76705697	1	36	534.133	-	-	7	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	5	5	10	6	31	27	31	28	10	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771741990	16	85674505	CCGG	C	418	PASS	KIAA0182	CCDS10952.1	r.?	-	-	Del	intronic	D	85674505	85674509	3	24	431.28	-	-	1	1	1	KIAA0182|CCDS10952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0182|CCDS10952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	5	3	5	4	19	24	19	24	5	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771746683	17	5875350	AGCAGCAGTG	A	261	PASS	-	-	-	-	-	Del	-	D	5875350	5875364	9	30	486.956	-	-	1	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	4	5	4	6	18	27	18	27	4	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771749483	17	11899927	G	GA	300	PASS	ZNF18	CCDS32568.1	r.?	-	-	Ins	intronic	I	11899927	11899937	1	10	267.521	-	-	9	1	1	ZNF18|CCDS32568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF18|CCDS32568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	1	4	1	4	24	24	24	24	1	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771758290	17	33729924	AGAAG	A	507	PASS	-	-	-	-	-	Del	-	D	33729924	33729932	4	32	541.062	-	-	1	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	7	3	8	4	25	13	25	13	8	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771758638	17	34655492	A	AT	407	PASS	TBC1D3C	ENST00000308078	r.?	-	-	Ins	intronic	I	34655492	34655502	1	12	588.546	-	-	9	1	1	TBC1D3C|ENST00000308078|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D3C|ENST00000308078|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	0	10	0	0	0	./.	11	0	13	0	50	0	50	0	13	0	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771762032	17	41210421	C	CA	598	PASS	BRCA1	CCDS11453.1	r.?	-	-	Ins	intronic	I	41210421	41210430	1	42	568.076	-	-	8	1	1	BRCA1|CCDS11453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BRCA1|CCDS11453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	33	25	33	0	0	./.	5	6	7	9	22	33	22	33	7	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771764997	17	47781430	T	TA	509	PASS	SLC35B1	CCDS11552.1	r.?	-	-	Ins	intronic	I	47781430	47781432	1	10	481.537	-	-	1	1	1	SLC35B1|CCDS11552.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC35B1|ENST00000435059|r.773_774insu|c.686_687insT|p.S230fs*>45|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	22	15	22	15	0	0	./.	0	9	0	9	20	30	20	30	0	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771769928	17	59749614	GT	G	418	PASS	-	-	-	-	-	Del	-	D	59749614	59749620	1	24	432.85	-	-	5	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	3	5	5	6	16	11	16	11	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771774050	17	68778288	G	GT	720	PASS	-	-	-	-	-	Ins	-	I	68778288	68778296	1	48	636.029	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	7	5	9	8	26	28	26	28	9	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771776795	17	74381052	GC	G	540	PASS	SPHK1	CCDS11744.1	r.364delC	c.?	p.?	Del	5'UTR variant	D	74381052	74381055	1	30	485.752	-	-	2	1	1	SPHK1|CCDS11744.1|r.364delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	SPHK1|CCDS11744.1|r.364delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	25	23	25	23	0	0	./.	4	5	6	6	26	22	26	22	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771784270	18	9866730	GTGGAGAGCTGGGACTGGATCCCTTT	G	261	PASS	RAB31	CCDS45826.1	r.?	-	-	Del	downstream	D	9866730	9866768	25	24	486.105	-	-	1	1	1	RAB31|CCDS45826.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RAB31|CCDS45826.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	21	11	21	0	0	./.	2	7	2	7	18	32	18	32	2	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771786395	18	15087486	CA	C	357	PASS	-	-	-	-	-	Del	-	D	15087486	15087495	1	15	323.468	-	-	8	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	2	4	5	23	19	23	19	4	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771787587	18	20406933	CCTTGAATTA	C	261	PASS	-	-	-	-	-	Del	-	D	20406933	20406947	9	18	487.911	-	-	1	1	1	-	-	./.	0	0	0	0	16	22	16	22	0	0	./.	8	1	0	0	23	20	23	20	8	1	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771794267	18	42289645	C	CA	598	PASS	SETBP1	CCDS11923.2	r.?	-	-	Ins	intronic	I	42289645	42289647	1	36	589.713	-	-	1	1	1	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	8	3	8	3	30	15	30	15	8	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771801816	18	63929962	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	63929962	63929972	1	10	268.052	-	-	9	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	1	4	1	4	20	31	21	31	1	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771804421	18	70288736	AC	A	420	PASS	-	-	-	-	-	Del	-	D	70288736	70288739	1	18	379.487	-	-	2	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	2	5	3	7	24	27	24	27	3	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771818755	19	23514945	TTC	T	360	PASS	ENSG00000235694	ENST00000439808	r.?	-	-	Del	intronic	D	23514945	23514949	2	12	325.314	-	-	1	1	1	ENSG00000235694|ENST00000439808|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000235694|ENST00000439808|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	19	9	19	0	0	./.	1	5	2	7	22	30	22	30	2	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771833925	2	416150	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	416150	416157	1	12	263.344	-	-	6	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	2	3	2	4	18	23	18	24	2	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771836912	2	9755632	ATGAG	A	778	PASS	YWHAQ	CCDS1666.1	r.?	-	-	Del	intronic	D	9755632	9755641	4	63	742.901	-	-	2	1	1	YWHAQ|CCDS1666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YWHAQ|CCDS1666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	8	6	9	6	21	19	21	19	9	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771837946	2	11845904	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	11845904	11845912	1	30	478.354	-	-	7	1	1	-	-	./.	0	0	0	0	20	25	20	25	0	0	./.	5	4	5	9	26	30	27	30	5	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771847005	2	35733199	TA	T	600	PASS	-	-	-	-	-	Del	-	D	35733199	35733204	1	35	535.718	-	-	4	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	4	6	6	6	16	25	16	25	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771854251	2	56413225	CCCAGTTCAG	C	319	PASS	CCDC85A	CCDS46290.1	r.?	-	-	Del	intronic	D	56413225	56413235	9	42	586.461	-	-	1	1	1	CCDC85A|CCDS46290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC85A|CCDS46290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	6	5	7	6	17	19	17	19	7	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771864332	2	85241425	TC	T	960	PASS	KCMF1	CCDS46350.1	r.?	-	-	Del	intronic	D	85241425	85241428	1	80	859.437	-	-	2	1	1	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCMF1|CCDS46350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	7	9	8	10	30	25	30	25	8	10	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771888252	2	159158601	T	TG	540	PASS	CCDC148	CCDS33304.1	r.?	-	-	Ins	intronic	I	159158601	159158609	1	18	472.935	-	-	7	1	1	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC148|CCDS33304.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	15	23	15	0	0	./.	8	1	9	3	28	17	28	17	9	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771891086	2	168209962	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	168209962	168209972	1	12	263.946	-	-	9	1	1	-	-	./.	0	0	0	0	13	19	13	20	0	0	./.	2	3	2	3	36	28	36	28	2	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771898417	2	189404122	C	CA	540	PASS	GULP1	CCDS2295.1	r.?	-	-	Ins	intronic	I	189404122	189404132	1	28	476.547	-	-	9	1	1	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	6	3	9	6	30	34	30	34	9	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771905401	2	208785380	T	TA	300	PASS	PLEKHM3	CCDS42808.1	r.?	-	-	Ins	intronic	I	208785380	208785381	1	10	262.742	-	-	0	1	1	PLEKHM3|CCDS42808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHM3|CCDS42808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	10	0	0	./.	1	4	3	4	27	23	27	23	3	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771907362	2	214410415	CT	C	540	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	214410415	214410419	1	30	483.772	-	-	3	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	26	17	26	0	0	./.	4	5	4	7	25	24	25	24	4	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771920259	20	4754475	CATTTGGGTT	C	261	PASS	-	-	-	-	-	Del	-	D	4754475	4754489	9	30	488.232	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	5	6	8	19	27	19	27	6	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771924004	20	14959029	CA	C	300	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14959029	14959031	1	10	267.962	-	-	1	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	1	6	1	14	22	14	22	6	1	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771924011	20	14988308	CTT	C	389	PASS	MACROD2	CCDS13120.2	r.?	-	-	Del	intronic	D	14988308	14988313	2	14	380.204	-	-	4	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	1	6	2	7	28	16	28	16	2	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771933550	20	42078308	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	42078308	42078315	1	15	322.277	-	-	6	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	2	4	6	7	20	35	20	35	6	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771938427	20	53750041	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	53750041	53750057	2	10	267.36	-	-	7	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	1	4	1	4	22	22	22	22	1	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771940360	20	59735094	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	59735094	59735095	1	35	537.128	-	-	0	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	6	4	9	4	19	20	19	20	9	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771978379	3	9975442	TG	T	509	PASS	CRELD1	CCDS2593.1	r.?	-	-	Del	upstream	D	9975442	9975445	1	28	482.895	-	-	2	1	1	CRELD1|CCDS2593.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CRELD1|CCDS2593.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	27	18	27	0	0	./.	3	6	5	9	24	24	24	24	5	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771979192	3	11765475	TG	T	449	PASS	VGLL4	CCDS2606.1	r.?	-	-	Del	upstream	D	11765475	11765485	1	9	430.845	-	-	9	1	1	VGLL4|CCDS2606.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	VGLL4|CCDS2606.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	21	7	21	0	0	./.	0	8	0	13	4	34	4	34	0	13	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2771987009	3	33698487	TCTC	T	716	PASS	CLASP2	ENST00000307312	r.?	-	-	Del	intronic	D	33698487	33698494	3	64	752.776	-	-	2	1	1	CLASP2|ENST00000307312|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLASP2|ENST00000307312|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	7	7	7	9	24	21	24	21	7	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772006177	3	86261570	CG	C	360	PASS	-	-	-	-	-	Del	-	D	86261570	86261572	1	15	323.134	-	-	1	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	4	2	6	3	17	25	17	25	6	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772006463	3	87251605	AT	A	480	PASS	-	-	-	-	-	Del	-	D	87251605	87251607	1	24	430.846	-	-	1	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	3	5	5	6	18	28	18	28	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772007518	3	93650391	T	TA	540	PASS	PROS1	CCDS2923.1	r.?	-	-	Ins	intronic	I	93650391	93650399	1	30	478.079	-	-	7	1	1	PROS1|CCDS2923.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PROS1|CCDS2923.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	16	20	0	0	./.	4	5	5	5	30	27	30	27	5	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772011775	3	105875234	AC	A	600	PASS	-	-	-	-	-	Del	-	D	105875234	105875236	1	35	537.353	-	-	1	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	6	4	6	7	21	32	21	32	6	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772016276	3	118694678	CA	C	780	PASS	IGSF11	CCDS2983.1	r.?	-	-	Del	intronic	D	118694678	118694684	1	50	699.522	-	-	5	1	1	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	4	9	6	12	24	20	24	20	6	12	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772016671	3	119794286	GA	G	480	PASS	GSK3B	CCDS2996.1	r.?	-	-	Del	intronic	D	119794286	119794291	1	21	430.845	-	-	4	1	1	GSK3B|CCDS2996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GSK3B|CCDS2996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	24	18	24	0	0	./.	6	2	6	7	20	28	20	28	6	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772027000	3	149278431	A	AT	420	PASS	WWTR1	CCDS3144.1	r.?	-	-	Ins	intronic	I	149278431	149278441	1	20	372.775	-	-	9	1	1	WWTR1|CCDS3144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WWTR1|CCDS3144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	4	3	5	6	22	26	23	27	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772030837	3	160155166	TTACTC	T	627	PASS	TRIM59	CCDS3190.1	r.1987_1991delGAGUA	c.?	p.?	Del	3'UTR variant	D	160155166	160155174	5	45	644.462	-	-	1	1	1	TRIM59|CCDS3190.1|r.1987_1991delGAGUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	TRIM59|CCDS3190.1|r.1987_1991delGAGUA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	19	16	19	16	0	0	./.	4	8	4	9	24	29	24	29	4	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772038686	3	183850044	GAAAAGA	G	377	PASS	EIF2B5	CCDS3252.1	r.?	-	-	Del	upstream	D	183850044	183850057	6	54	699.522	-	-	2	1	1	EIF2B5|CCDS3252.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	EIF2B5|CCDS3252.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	11	18	11	0	0	./.	8	5	8	6	28	25	28	26	8	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772067661	4	63062331	TG	T	300	PASS	-	-	-	-	-	Del	-	D	63062331	63062333	1	10	269.228	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	4	1	4	21	30	21	30	1	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772073369	4	79358258	G	GA	360	PASS	FRAS1	ENST00000264895	r.?	-	-	Ins	intronic	I	79358258	79358265	1	16	319.461	-	-	6	1	1	FRAS1|ENST00000264895|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FRAS1|ENST00000264895|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	14	12	14	0	0	./.	3	3	5	3	26	26	26	26	5	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772076776	4	90079044	CT	C	600	PASS	-	-	-	-	-	Del	-	D	90079044	90079046	1	36	538.456	-	-	1	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	5	5	6	7	13	18	13	18	6	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772091783	4	137456678	AT	A	540	PASS	-	-	-	-	-	Del	-	D	137456678	137456681	1	28	484.61	-	-	2	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	6	5	8	22	23	22	23	5	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772095832	4	149366806	TGGGCCCGGCAGGCGGGC	T	377	PASS	NR3C2	CCDS3772.1	r.?	-	-	Del	upstream	D	149366806	149366826	17	56	698.186	-	-	1	1	1	NR3C2|CCDS3772.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NR3C2|CCDS3772.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	24	20	24	20	0	0	./.	6	7	8	7	22	37	22	37	8	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772128899	5	41374506	CA	C	360	PASS	PLCXD3	CCDS34150.1	r.?	-	-	Del	intronic	D	41374506	41374512	1	16	323.43	-	-	5	1	1	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCXD3|CCDS34150.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	3	3	4	3	20	24	20	24	4	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772136693	5	66827552	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	66827552	66827561	1	24	426.423	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	5	4	7	20	24	20	25	4	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772142232	5	82832972	T	TA	360	PASS	VCAN	CCDS4060.1	r.4715_4716insa	c.4150_4151insA	p.Y1384fs*1	Ins	frameshift	I	82832972	82832974	1	15	319.817	-	-	1	1	1	VCAN|CCDS4060.1|r.4715_4716insa|c.4150_4151insA|p.Y1384fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	VCAN|CCDS4060.1|r.4715_4716insa|c.4150_4151insA|p.Y1384fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	19	15	19	15	0	0	./.	4	2	5	3	16	26	16	26	5	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772146929	5	98039506	CAA	C	420	PASS	-	-	-	-	-	Del	-	D	98039506	98039509	2	14	377.335	-	-	2	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	6	1	9	3	26	18	26	18	9	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772147341	5	99114697	CAT	C	420	PASS	-	-	-	-	-	Del	-	D	99114697	99114700	2	20	377.335	-	-	1	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	4	3	6	4	17	28	17	28	6	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772151046	5	109787008	AC	A	720	PASS	TMEM232	CCDS33841.1	r.?	-	-	Del	intronic	D	109787008	109787011	1	40	646.258	-	-	2	1	1	TMEM232|CCDS33841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM232|CCDS33841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	9	3	10	4	21	20	21	20	10	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772155647	5	123127025	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	123127025	123127035	1	35	533.029	-	-	9	1	1	-	-	./.	0	0	0	0	12	20	13	20	0	0	./.	4	6	5	9	22	27	22	27	5	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772158012	5	130144798	CAAG	C	420	PASS	-	-	-	-	-	Del	-	D	130144798	130144806	3	20	377.335	-	-	2	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	3	4	3	4	14	21	14	21	3	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772169651	5	163541045	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	163541045	163541054	1	24	426.423	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	15	0	0	./.	3	5	4	7	23	15	23	15	4	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772171015	5	167208393	G	GA	449	PASS	-	-	-	-	-	Ins	-	I	167208393	167208400	1	24	426.423	-	-	6	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	5	6	5	25	23	25	23	6	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772184309	6	19181933	TAAAC	T	389	PASS	ENSG00000196333	ENST00000358740	r.?	-	-	Del	intronic	D	19181933	19181941	4	20	377.356	-	-	1	1	1	ENSG00000196333|ENST00000358740|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ENSG00000196333|ENST00000358740|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	4	3	6	4	22	25	22	25	6	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772186725	6	25240561	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	25240561	25240563	1	10	266.53	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	1	5	3	17	17	17	17	5	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772188700	6	30506421	C	CT	449	PASS	GNL1	CCDS4680.1	r.?	-	-	Ins	downstream	I	30506421	30506431	1	25	424.039	-	-	9	1	1	GNL1|CCDS4680.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GNL1|CCDS4680.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	23	15	23	15	0	0	./.	4	4	5	5	29	21	29	21	5	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772197528	6	51637804	G	GA	540	PASS	PKHD1	CCDS4935.1	r.?	-	-	Ins	intronic	I	51637804	51637811	1	28	479.152	-	-	6	1	1	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PKHD1|CCDS4935.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	6	7	7	37	22	39	23	7	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772207410	6	80379902	GT	G	780	PASS	SH3BGRL2	CCDS4991.1	r.?	-	-	Del	intronic	D	80379902	80379910	1	56	698.396	-	-	7	1	1	SH3BGRL2|CCDS4991.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3BGRL2|CCDS4991.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	7	6	11	7	37	25	37	25	11	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772212962	6	96742863	CA	C	420	PASS	-	-	-	-	-	Del	-	D	96742863	96742865	1	20	377.356	-	-	1	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	4	3	5	4	17	23	17	23	5	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772215383	6	104700947	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	104700947	104700949	1	10	265.326	-	-	1	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	4	1	4	3	18	21	18	21	4	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772225799	6	136882867	ATACT	A	360	PASS	MAP3K5	CCDS5179.1	r.?	-	-	Del	intronic	D	136882867	136882873	4	15	323.448	-	-	1	1	1	MAP3K5|CCDS5179.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP3K5|CCDS5179.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	4	2	8	4	28	25	28	25	8	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772232336	6	157509959	CAG	C	960	PASS	ARID1B	CCDS5251.1	r.?	-	-	Del	intronic	D	157509959	157509964	2	81	855.304	-	-	2	1	1	ARID1B|CCDS5251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID1B|CCDS5251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	8	8	9	8	24	31	24	31	9	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772233460	6	160614014	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	160614014	160614023	1	20	371.938	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	18	16	0	0	./.	4	3	5	5	20	25	20	25	5	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772241212	7	9939288	GA	G	360	PASS	-	-	-	-	-	Del	-	D	9939288	9939293	1	15	323.546	-	-	4	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	4	2	6	17	19	17	19	2	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772241335	7	10264715	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	10264715	10264723	1	24	426.578	-	-	7	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	3	5	5	7	27	22	28	22	5	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772267530	7	78606729	CAG	C	300	PASS	MAGI2	CCDS5594.1	r.?	-	-	Del	intronic	D	78606729	78606749	2	12	269.621	-	-	9	1	-	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	20	11	0	0	./.	2	3	2	2	25	23	27	24	2	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772273334	7	97060895	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	97060895	97060903	1	10	263.601	-	-	7	1	1	-	-	./.	0	0	0	0	8	16	9	16	0	0	./.	1	4	4	5	18	29	18	29	4	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772278574	7	109929725	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	109929725	109929730	2	10	269.621	-	-	2	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	4	1	6	3	31	15	31	15	6	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772281079	7	118941538	CT	C	480	PASS	-	-	-	-	-	Del	-	D	118941538	118941541	1	24	430.792	-	-	2	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	5	3	6	6	19	26	19	26	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772307048	8	29190429	AAAAAG	A	360	PASS	DUSP4	CCDS6072.1	r.?	-	-	Del	downstream	D	29190429	29190447	5	16	323.956	-	-	3	1	1	DUSP4|CCDS6072.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	DUSP4|CCDS6072.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	36	27	36	27	0	0	./.	3	3	6	6	35	23	35	23	6	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772310191	8	38201461	CTGTT	C	600	PASS	WHSC1L1	CCDS43729.1	r.?	-	-	Del	intronic	D	38201461	38201468	4	36	539.926	-	-	1	1	1	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	5	5	6	5	16	21	16	21	6	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772312069	8	43660954	CTCTTTGAAGTGTGGA	C	377	PASS	-	-	-	-	-	Del	-	D	43660954	43660971	15	50	701.904	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	9	4	9	4	25	21	25	21	9	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772313072	8	50356439	GAA	G	660	PASS	-	-	-	-	-	Del	-	D	50356439	50356442	2	40	593.919	-	-	2	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	7	4	9	4	38	20	38	20	9	4	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772313954	8	53204944	T	TGC	600	PASS	ST18	CCDS6149.1	r.?	-	-	Ins	intronic	I	53204944	53204946	2	36	527.885	-	-	0	1	-	ST18|CCDS6149.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ST18|CCDS6149.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	14	24	14	0	0	./.	5	5	5	5	27	22	27	22	5	5	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772319787	8	71373942	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	71373942	71373951	1	30	476.903	-	-	8	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	5	4	5	9	16	32	16	32	5	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772331757	8	106606026	C	CA	360	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Ins	intronic	I	106606026	106606035	1	15	319.139	-	-	8	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	2	4	4	9	16	40	16	40	4	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772338622	8	125471222	CT	C	629	PASS	AC090192.2	ENST00000499418	r.?	-	-	Del	downstream	D	125471222	125471224	1	30	593.919	-	-	1	1	1	AC090192.2|ENST00000499418|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC090192.2|ENST00000499418|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	12	20	12	20	0	0	./.	2	9	4	9	24	30	24	30	4	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772340702	8	131221735	ATAAATCAAGGCACTGCTACAAACTAAAGT	A	319	PASS	ASAP1	CCDS6362.1	r.?	-	-	Del	intronic	D	131221735	131221767	29	40	593.919	-	-	1	1	1	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	14	16	14	0	0	./.	4	7	4	4	20	28	20	31	4	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772350531	9	13506785	CATT	C	627	PASS	-	-	-	-	-	Del	-	D	13506785	13506791	3	40	646.994	-	-	1	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	3	9	4	9	19	26	19	26	4	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772363764	9	73779265	C	CT	300	PASS	TRPM3	ENST00000357533	r.?	-	-	Ins	intronic	I	73779265	73779272	1	12	262.506	-	-	6	1	1	TRPM3|ENST00000357533|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPM3|ENST00000357533|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	13	30	13	0	0	./.	3	2	5	6	27	27	27	27	5	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772369463	9	91229760	AT	A	480	PASS	-	-	-	-	-	Del	-	D	91229760	91229768	1	21	421.696	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	6	3	9	21	26	21	26	3	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772370556	9	95182957	GA	G	420	PASS	CENPP	CCDS35063.1	r.?	-	-	Del	intronic	D	95182957	95182959	1	18	377.262	-	-	1	1	1	CENPP|CCDS35063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPP|CCDS35063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	5	4	9	27	27	27	27	4	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772374137	9	106495255	CTTA	C	418	PASS	-	-	-	-	-	Del	-	D	106495255	106495262	3	24	432.533	-	-	2	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	3	5	3	6	16	17	16	17	3	6	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772379222	9	119814198	G	GA	300	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119814198	119814205	1	12	267.323	-	-	6	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	3	2	3	3	23	29	23	29	3	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772395562	X	55549816	C	CATATATGTATATATATGTATATATATACACATATGTGTGTGTACACATAT	360	PASS	-	-	-	-	-	Ins	-	I	55549816	55549823	50	16	145.518	-	-	0	1	-	-	-	./.	0	0	0	0	5	14	6	14	0	0	./.	3	3	0	0	19	15	19	15	3	3	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772396593	X	65946329	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	65946329	65946339	1	21	421	-	-	9	1	-	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	6	3	9	12	14	12	14	3	9	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772399155	X	82142083	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	82142083	82142093	1	28	472.948	-	-	9	1	1	-	-	./.	0	0	0	0	4	10	5	10	0	0	./.	6	3	8	7	12	14	12	14	8	7	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772399810	X	85857782	C	CT	600	PASS	DACH2	CCDS48140.1	r.?	-	-	Ins	intronic	I	85857782	85857788	1	32	537.539	-	-	5	1	1	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DACH2|CCDS48140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	7	4	8	18	16	18	16	4	8	1	1	1	1	1	1	1	1
2819255	PD20342a	PD20342b	2772404617	X	113185154	GT	G	420	PASS	-	-	-	-	-	Del	-	D	113185154	113185158	1	14	379.89	-	-	3	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	1	6	3	8	4	12	4	12	3	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782574396	1	16979401	T	TAA	277	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16979401	16979409	2	10	472.524	-	-	7	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	30	28	31	0	0	./.	9	0	15	0	69	46	70	46	15	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782583050	1	38963265	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	38963265	38963284	2	12	266.126	-	-	9	1	1	-	-	./.	0	0	0	0	24	24	24	24	0	0	./.	3	2	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782611081	1	121362229	AC	A	513	PASS	-	-	-	-	-	Del	-	D	121362229	121362231	1	18	912.414	-	-	1	1	1	-	-	./.	0	0	0	0	16	51	16	51	0	0	./.	17	0	24	0	183	52	183	52	24	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782611673	1	142595436	TA	T	297	PASS	-	-	-	-	-	Del	-	D	142595436	142595441	1	15	322.241	-	-	4	1	1	-	-	./.	0	0	0	0	46	48	46	48	0	0	./.	2	4	3	7	82	108	82	108	3	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782633336	1	195860376	AG	A	300	PASS	-	-	-	-	-	Del	-	D	195860376	195860379	1	12	255.891	-	-	2	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	3	2	25	30	25	30	3	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782635754	1	202349727	AC	A	480	PASS	PPP1R12B	CCDS30973.1	r.?	-	-	Del	intronic	D	202349727	202349736	1	21	429.655	-	-	8	1	1	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	13	27	13	0	0	./.	6	2	6	3	31	24	31	24	6	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782642402	1	220225020	T	TC	540	PASS	-	-	-	-	-	Ins	-	I	220225020	220225029	1	30	477.943	-	-	8	1	1	-	-	./.	0	0	0	0	15	11	16	11	0	0	./.	5	4	8	6	32	31	32	31	8	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782646441	1	230524691	G	GC	1020	PASS	PGBD5	ENST00000391860	r.?	-	-	Ins	intronic	I	230524691	230524695	1	84	900.975	-	-	3	1	1	PGBD5|ENST00000391860|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PGBD5|ENST00000391860|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	15	23	16	0	0	./.	11	6	18	11	40	25	41	25	18	11	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782651310	1	242140682	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	242140682	242140691	1	20	367.519	-	-	8	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	3	6	6	35	23	35	23	6	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782654289	1	248735798	CCATTT	C	512	PASS	OR2T34	CCDS31120.1	r.?	-	-	Del	downstream	D	248735798	248735804	5	17	859.31	-	-	1	1	1	OR2T34|CCDS31120.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR2T34|CCDS31120.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	0	10	0	0	0	./.	16	0	17	0	27	0	27	0	17	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782661285	10	16999676	C	CA	420	PASS	CUBN	CCDS7113.1	r.?	-	-	Ins	intronic	I	16999676	16999683	1	20	373.099	-	-	6	1	1	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	22	14	24	0	0	./.	3	4	4	4	29	20	30	20	4	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782667490	10	34108118	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	34108118	34108127	1	21	424.593	-	-	8	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	2	6	4	6	23	23	23	23	4	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782668739	10	37538233	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	37538233	37538238	2	10	269.51	-	-	2	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	1	6	1	23	22	23	22	6	1	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782676675	10	62243347	TG	T	960	PASS	ANK3	ENST00000373827	r.?	-	-	Del	intronic	D	62243347	62243349	1	81	861.829	-	-	1	1	1	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANK3|ENST00000373827|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	21	11	21	0	0	./.	8	8	16	12	30	21	30	21	16	12	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782693002	10	110860617	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	110860617	110860635	2	12	268.908	-	-	8	1	-	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	3	3	26	33	26	33	3	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782707907	11	17805127	TA	T	540	PASS	KCNC1	CCDS44547.1	r.?	-	-	Del	downstream	D	17805127	17805129	1	30	483.516	-	-	1	1	1	KCNC1|CCDS44547.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNC1|CCDS44547.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	7	13	7	0	0	./.	5	4	8	6	32	23	32	23	8	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782710260	11	24050807	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	24050807	24050815	1	27	532.692	-	-	7	1	1	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	2	8	5	11	32	31	32	32	5	11	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782712101	11	28651044	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	28651044	28651052	1	10	264.54	-	-	7	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	1	4	2	5	27	22	28	22	2	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782720236	11	55071083	AT	A	296	PASS	-	-	-	-	-	Del	-	D	55071083	55071093	1	16	323.95	-	-	9	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	3	3	6	4	30	30	30	30	6	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782739897	11	112316202	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	112316202	112316208	1	28	480.506	-	-	5	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	6	3	7	5	28	22	28	23	7	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782746008	11	129358418	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	129358418	129358435	2	12	269.356	-	-	8	1	-	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	2	3	2	3	37	36	37	36	2	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782747009	11	132407345	CA	C	660	PASS	ENSG00000183715	CCDS8492.1	r.?	-	-	Del	intronic	D	132407345	132407349	1	40	592.704	-	-	3	1	1	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	4	7	6	8	26	27	26	27	6	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782756876	12	24604712	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	24604712	24604715	1	18	373.647	-	-	2	1	1	-	-	./.	0	0	0	0	16	8	17	8	0	0	./.	5	2	8	3	22	23	22	23	8	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782761066	12	38054505	CT	C	420	PASS	-	-	-	-	-	Del	-	D	38054505	38054507	1	14	377.861	-	-	1	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	1	6	3	7	15	31	15	31	3	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782764844	12	49466207	AAC	A	360	PASS	RHEBL1	CCDS8778.1	r.?	-	-	Del	upstream	D	49466207	49466223	2	15	322.075	-	-	7	1	1	RHEBL1|CCDS8778.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RHEBL1|CCDS8778.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	11	8	11	8	0	0	./.	4	2	4	2	29	5	29	5	4	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782773351	12	73509553	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	73509553	73509573	2	12	269.901	-	-	9	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	2	3	2	33	32	33	32	3	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782781078	12	95691185	TC	T	300	PASS	VEZT	CCDS44954.1	r.?	-	-	Del	intronic	D	95691185	95691190	1	12	263.88	-	-	4	1	1	VEZT|CCDS44954.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VEZT|CCDS44954.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	3	2	4	2	33	25	33	25	4	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782781461	12	96299920	A	AT	420	PASS	CCDC38	CCDS9056.1	r.?	-	-	Ins	intronic	I	96299920	96299921	1	20	373.647	-	-	0	1	1	CCDC38|CCDS9056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC38|CCDS9056.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	4	3	4	3	26	25	27	25	4	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782813340	13	60164797	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	60164797	60164806	1	20	374.128	-	-	8	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	4	3	5	5	35	30	35	31	5	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782827578	13	102394727	GAA	G	300	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102394727	102394731	2	12	270.675	-	-	3	1	1	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	3	2	4	4	24	26	24	26	4	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782828330	13	104552388	GT	G	600	PASS	-	-	-	-	-	Del	-	D	104552388	104552394	1	32	541.349	-	-	5	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	3	7	7	9	18	28	18	28	7	9	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782835943	14	27800298	AAAT	A	389	PASS	-	-	-	-	-	Del	-	D	27800298	27800307	3	20	378.996	-	-	2	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	4	3	4	34	30	34	30	3	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782844952	14	50061567	ACAGC	A	569	PASS	PPIL5	CCDS9686.1	r.?	-	-	Del	upstream	D	50061567	50061572	4	27	541.423	-	-	1	1	1	PPIL5|CCDS9686.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PPIL5|CCDS9686.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	8	13	8	0	0	./.	2	8	2	9	31	39	31	39	2	9	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782846167	14	52028601	G	GA	300	PASS	FRMD6	CCDS9704.1	r.?	-	-	Ins	intronic	I	52028601	52028609	1	12	267.701	-	-	7	1	1	FRMD6|CCDS9704.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FRMD6|CCDS9704.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	25	0	0	./.	3	2	3	4	36	52	36	53	3	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782853672	14	73526327	C	CT	600	PASS	RBM25	CCDS32113.1	r.?	-	-	Ins	intronic	I	73526327	73526329	1	32	534.8	-	-	1	1	1	RBM25|CCDS32113.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RBM25|CCDS32113.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	20	18	20	0	0	./.	3	7	7	11	15	22	15	24	7	11	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782858919	14	88692745	GA	G	660	PASS	KCNK10	CCDS9881.1	r.?	-	-	Del	intronic	D	88692745	88692752	1	42	594.963	-	-	6	1	1	KCNK10|CCDS9881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNK10|CCDS9881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	5	6	6	9	25	30	25	30	6	9	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782864342	14	104107250	CTAT	C	283	PASS	C14orf153	CCDS32165.1	r.?	-	-	Del	intronic	D	104107250	104107262	3	10	267.701	-	-	3	1	1	C14orf153|CCDS32165.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C14orf153|CCDS32165.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	1	4	3	4	20	18	20	18	3	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782872349	15	37594898	CA	C	360	PASS	-	-	-	-	-	Del	-	D	37594898	37594908	1	15	325.237	-	-	9	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	4	2	7	3	31	28	31	28	7	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782879329	15	57229416	A	AT	600	PASS	TCF12	CCDS10159.1	r.?	-	-	Ins	intronic	I	57229416	57229424	1	35	533.031	-	-	7	1	1	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TCF12|CCDS10159.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	24	21	24	0	0	./.	6	4	9	5	31	27	32	27	9	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782887585	15	79006200	CT	C	960	PASS	-	-	-	-	-	Del	-	D	79006200	79006206	1	80	866.698	-	-	5	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	7	9	11	12	31	33	31	33	11	12	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782892764	15	94212039	CCAA	C	329	PASS	-	-	-	-	-	Del	-	D	94212039	94212045	3	12	325.237	-	-	1	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	5	1	5	3	16	23	16	23	5	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782898012	16	4423162	TC	T	480	PASS	CORO7	CCDS10513.1	r.?	-	-	Del	intronic	D	4423162	4423167	1	21	427.917	-	-	4	1	1	CORO7|CCDS10513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORO7|CCDS10513.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	13	19	13	0	0	./.	2	6	3	7	50	44	50	44	3	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782903699	16	14336218	TATC	T	449	PASS	MKL2	CCDS32391.1	r.?	-	-	Del	intronic	D	14336218	14336224	3	24	432.131	-	-	1	1	1	MKL2|CCDS32391.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MKL2|CCDS32391.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	5	5	33	32	33	32	5	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782905784	16	18842115	CA	C	329	PASS	SMG1	CCDS45430.1	r.?	-	-	Del	intronic	D	18842115	18842125	1	15	323.948	-	-	9	1	1	SMG1|CCDS45430.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMG1|CCDS45430.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	2	4	2	5	27	47	27	47	2	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782906095	16	19254986	GA	G	300	PASS	SYT17	CCDS10575.1	r.?	-	-	Del	intronic	D	19254986	19254991	1	12	270.458	-	-	4	1	1	SYT17|CCDS10575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT17|CCDS10575.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	5	4	26	36	26	36	5	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782910578	16	28211484	AG	A	300	PASS	XPO6	CCDS42135.1	r.?	-	-	Del	intronic	D	28211484	28211486	1	12	269.254	-	-	1	1	1	XPO6|CCDS42135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XPO6|CCDS42135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	2	3	2	3	36	55	36	55	2	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782911600	16	30126553	CA	C	300	PASS	MAPK3	CCDS42149.1	r.?	-	-	Del	intronic	D	30126553	30126563	1	12	269.254	-	-	9	1	1	MAPK3|CCDS42149.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	MAPK3|CCDS42149.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	3	2	49	47	49	47	3	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782918164	16	54991465	A	AT	569	PASS	-	-	-	-	-	Ins	-	I	54991465	54991474	1	36	525.865	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	5	5	6	5	23	16	23	16	6	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782919430	16	58571761	AATGCACAGGGATCTCAAAGCATTTCATCCTC	A	319	PASS	CNOT1	CCDS10799.1	r.5705+3_5705+33del31	c.5414+3_5414+33del31	p.?	Del	ess splice	D	58571761	58571794	31	30	595.008	-	-	1	1	1	CNOT1|CCDS10799.1|r.5705+3_5705+33del31|c.5414+3_5414+33del31|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:intron:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000188:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001627:SO:0001576	CNOT1|CCDS10799.1|r.5705+3_5705+33del31|c.5414+3_5414+33del31|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:intron:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000188:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001627:SO:0001576	./.	0	0	0	0	13	13	13	13	0	0	./.	2	9	1	8	31	29	32	30	2	9	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782924849	16	73851434	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	73851434	73851442	2	12	270.458	-	-	3	1	1	-	-	./.	0	0	0	0	13	24	13	24	0	0	./.	2	3	4	6	21	20	21	20	4	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782930204	16	88254163	GC	G	319	PASS	-	-	-	-	-	Del	-	D	88254163	88254168	1	10	486.825	-	-	4	1	1	-	-	./.	0	0	0	0	13	23	13	23	0	0	./.	9	0	11	0	28	24	28	24	11	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782930265	16	88514867	A	AC	480	PASS	ZFPM1	CCDS32502.1	r.?	-	-	Ins	upstream	I	88514867	88514874	1	25	427.917	-	-	6	1	1	ZFPM1|CCDS32502.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZFPM1|CCDS32502.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	21	13	21	0	0	./.	4	4	5	4	19	29	19	32	5	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782932051	17	1935954	G	GT	569	PASS	DPH1	CCDS42228.1	r.?	-	-	Ins	intronic	I	1935954	1935956	1	35	534.223	-	-	1	1	1	DPH1|CCDS42228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPH1|CCDS42228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	21	12	21	0	0	./.	4	6	7	8	25	43	25	43	7	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782932392	17	2651726	CTG	C	269	PASS	MIR1253	ENST00000408273	r.?	-	-	Del	upstream	D	2651726	2651745	2	12	270.423	-	-	9	1	1	MIR1253|ENST00000408273|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR1253|ENST00000408273|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	15	18	15	18	0	0	./.	2	3	2	4	24	38	24	38	2	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782942078	17	22136093	ACC	A	544	PASS	-	-	-	-	-	Del	-	D	22136093	22136098	2	35	539.641	-	-	4	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	6	4	12	6	39	38	39	38	12	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782946420	17	34490370	CT	C	510	PASS	TBC1D3B	CCDS42300.1	r.?	-	-	Del	downstream	D	34490370	34490374	1	19	971.716	-	-	3	1	1	TBC1D3B|CCDS42300.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TBC1D3B|CCDS42300.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	6	18	6	0	0	./.	18	0	24	0	61	16	61	16	24	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782948212	17	38156283	C	CA	780	PASS	PSMD3	CCDS11356.1	r.?	-	-	Ins	downstream	I	38156283	38156292	1	54	693.466	-	-	8	1	1	PSMD3|CCDS11356.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PSMD3|CCDS11356.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	18	18	18	0	0	./.	8	5	11	7	34	39	34	39	11	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782954566	17	51675472	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	51675472	51675479	1	28	481.342	-	-	6	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	6	3	8	5	35	28	36	28	8	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782959120	17	62383807	CA	C	269	PASS	-	-	-	-	-	Del	-	D	62383807	62383817	1	12	269.821	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	3	2	3	24	50	24	50	2	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782962388	17	69374222	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	69374222	69374241	2	12	270.423	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	2	4	2	45	35	45	35	4	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782966991	17	79009537	TGCGGCGGCCAG	T	319	PASS	BAIAP2	CCDS45806.1	r.?	-	-	Del	intronic	D	79009537	79009550	11	40	593.124	-	-	1	1	1	BAIAP2|CCDS45806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAIAP2|CCDS45806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	28	15	28	0	0	./.	4	7	4	8	29	40	29	40	4	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782968852	18	912261	A	AT	360	PASS	ADCYAP1	CCDS11825.1	r.?	-	-	Ins	downstream	I	912261	912269	1	15	321.193	-	-	7	1	1	ADCYAP1|CCDS11825.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	ADCYAP1|CCDS11825.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	18	16	19	16	0	0	./.	4	2	4	5	39	43	39	43	4	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782985425	18	46762857	A	AT	300	PASS	DYM	CCDS11937.1	r.?	-	-	Ins	intronic	I	46762857	46762858	1	12	267.661	-	-	0	1	-	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	8	24	9	0	0	./.	2	3	2	4	19	25	19	25	2	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782988636	18	55119173	T	TG	300	PASS	ONECUT2	CCDS42440.1	r.?	-	-	Ins	intronic	I	55119173	55119182	1	10	262.242	-	-	8	1	1	ONECUT2|CCDS42440.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ONECUT2|CCDS42440.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	27	18	27	0	0	./.	1	4	1	7	22	38	22	38	1	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782990026	18	57890206	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	57890206	57890214	1	30	588.854	-	-	7	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	9	2	10	4	32	46	32	48	10	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782992306	18	64056648	CA	C	360	PASS	-	-	-	-	-	Del	-	D	64056648	64056657	1	12	324.806	-	-	8	1	1	-	-	./.	0	0	0	0	24	10	24	10	0	0	./.	5	1	6	2	33	11	33	11	6	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2782992655	18	64912191	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	64912191	64912199	1	10	267.059	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	1	5	14	33	14	33	1	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783000640	19	4537198	AG	A	749	PASS	PLIN5	CCDS42473.1	r.?	-	-	Del	upstream	D	4537198	4537201	1	56	703.508	-	-	2	1	1	PLIN5|CCDS42473.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PLIN5|CCDS42473.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	23	15	23	0	0	./.	7	6	9	7	55	36	55	36	9	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783005988	19	12625187	G	GA	300	PASS	ZNF709	CCDS45990.1	r.?	-	-	Ins	upstream	I	12625187	12625197	1	10	266.968	-	-	9	1	1	ZNF709|CCDS45990.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	ENSG00000196826|ENST00000428311|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	31	16	31	0	0	./.	1	4	2	7	44	61	44	61	2	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783017481	19	35811111	TCA	T	360	PASS	-	-	-	-	-	Del	-	D	35811111	35811116	2	16	321.083	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	7	4	43	25	43	25	7	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783025951	19	50602013	TA	T	261	PASS	-	-	-	-	-	Del	-	D	50602013	50602023	1	10	487.044	-	-	9	1	1	-	-	./.	0	0	0	0	28	2	32	2	0	0	./.	9	0	12	0	211	6	214	6	12	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783029231	19	55695094	C	CA	295	PASS	PTPRH	CCDS33110.1	r.?	-	-	Ins	intronic	I	55695094	55695104	1	12	266.968	-	-	9	1	1	PTPRH|CCDS33110.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRH|CCDS33110.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	3	3	34	32	34	32	3	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783056076	2	74836346	CT	C	509	PASS	C2orf65	CCDS33229.1	r.?	-	-	Del	intronic	D	74836346	74836348	1	30	483.927	-	-	1	1	1	C2orf65|CCDS33229.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C2orf65|CCDS33229.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	4	5	4	6	26	26	26	26	4	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783057596	2	79731345	G	GT	300	PASS	CTNNA2	CCDS42703.2	r.?	-	-	Ins	intronic	I	79731345	79731355	1	10	265.236	-	-	9	1	1	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CTNNA2|CCDS42703.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	34	23	34	0	0	./.	1	4	1	4	23	43	24	43	1	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783070260	2	122843462	C	CTTCCTTCCTTCCCTT	300	PASS	-	-	-	-	-	Ins	-	I	122843462	122843475	15	12	218.275	-	-	0	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	3	0	0	32	20	32	20	2	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783071595	2	127061727	TTA	T	420	PASS	-	-	-	-	-	Del	-	D	127061727	127061732	2	20	375.184	-	-	2	1	1	-	-	./.	0	0	0	0	11	26	11	26	0	0	./.	4	3	4	5	22	22	22	22	4	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783078191	2	146083754	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	146083754	146083764	1	12	265.838	-	-	9	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	3	2	3	3	23	24	24	24	3	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783086067	2	172056798	AC	A	420	PASS	-	-	-	-	-	Del	-	D	172056798	172056806	1	18	375.786	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	2	5	2	6	20	23	20	23	2	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783088867	2	180400940	C	CT	300	PASS	ZNF385B	CCDS33339.1	r.?	-	-	Ins	intronic	I	180400940	180400949	1	10	265.838	-	-	8	1	1	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF385B|CCDS33339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	22	19	23	0	0	./.	4	1	5	3	26	16	26	16	5	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783089254	2	181841864	C	CA	480	PASS	UBE2E3	CCDS2282.1	r.?	-	-	Ins	upstream	I	181841864	181841868	1	25	425.341	-	-	3	1	1	UBE2E3|CCDS2282.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	UBE2E3|ENST00000430956|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	4	5	6	14	17	15	18	5	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783089658	2	183231861	G	GA	300	PASS	PDE1A	CCDS2285.1	r.?	-	-	Ins	intronic	I	183231861	183231871	1	6	265.838	-	-	9	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	0	5	0	5	11	28	11	28	0	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783095721	2	202984551	C	CT	360	PASS	ENSG00000182329	ENST00000295844	r.?	-	-	Ins	intronic	I	202984551	202984553	1	15	318.404	-	-	1	1	1	ENSG00000182329|ENST00000295844|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	ENSG00000182329|ENST00000295844|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	18	10	19	0	0	./.	2	4	5	7	20	25	20	25	5	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783114777	20	12171920	TC	T	600	PASS	-	-	-	-	-	Del	-	D	12171920	12171922	1	36	536.188	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	5	5	5	8	29	36	29	36	5	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783117803	20	19730269	T	TGAGACAGGAGGTCAGCAGAA	435	PASS	-	-	-	-	-	Ins	-	I	19730269	19730292	20	60	631.49	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	11	4	5	0	50	32	56	37	11	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783121978	20	30099211	CT	C	420	PASS	HM13	CCDS13183.1	r.?	-	-	Del	upstream	D	30099211	30099220	1	20	379.546	-	-	8	1	1	HM13|CCDS13183.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HM13|CCDS13183.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	17	17	19	0	0	./.	3	4	5	4	22	28	22	32	5	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783128048	20	43903349	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	43903349	43903357	1	10	268.094	-	-	7	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	4	1	5	2	41	54	41	54	5	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783166988	22	48467015	GTACCTGAAATTTTGACTCTGAAATTAACACATCATCCTGTCTTTTTTCTGGCAGCCCTAACTTAAACGCAACCT	G	319	PASS	-	-	-	-	-	Del	-	D	48467015	48467091	74	30	599.858	-	-	1	1	1	-	-	./.	0	0	0	0	15	28	15	28	0	0	./.	9	2	0	0	19	21	28	23	9	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783176764	3	26215253	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	26215253	26215256	1	56	692.452	-	-	2	1	1	-	-	./.	0	0	0	0	28	21	28	21	0	0	./.	6	7	6	8	27	22	27	22	6	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783177728	3	29100188	AT	A	420	PASS	-	-	-	-	-	Del	-	D	29100188	29100191	1	20	377.073	-	-	2	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	4	3	5	4	27	17	27	17	5	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783177965	3	29788923	AGATAGATAGATAGATAGAT	A	300	PASS	RBMS3	CCDS33725.1	r.?	-	-	Del	intronic	D	29788923	29788944	19	12	269.338	-	-	1	1	-	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	3	2	0	0	31	15	31	15	3	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783183319	3	47304983	CCT	C	780	PASS	KIF9	CCDS2752.1	r.?	-	-	Del	intronic	D	47304983	47304986	2	56	690.646	-	-	1	1	1	KIF9|CCDS2752.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF9|CCDS2752.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	7	6	7	6	21	28	21	28	7	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783225958	3	181180500	CTGAA	C	567	PASS	-	-	-	-	-	Del	-	D	181180500	181180507	4	42	592.544	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	6	5	7	6	23	23	23	23	7	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783226999	3	184068224	CTTA	C	600	PASS	FAM131A	CCDS3262.1	r.?	-	-	Del	downstream	D	184068224	184068236	3	32	538.676	-	-	3	1	1	FAM131A|CCDS3262.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CLCN2|CCDS3263.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	3	7	4	7	18	26	18	26	4	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783239412	4	19494777	GC	G	300	PASS	-	-	-	-	-	Del	-	D	19494777	19494779	1	10	268.281	-	-	1	1	1	-	-	./.	0	0	0	0	18	18	18	19	0	0	./.	4	1	6	1	42	17	42	17	6	1	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783250173	4	47282088	C	CT	600	PASS	GABRB1	CCDS3474.1	r.?	-	-	Ins	intronic	I	47282088	47282097	1	27	531.746	-	-	8	1	1	GABRB1|CCDS3474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GABRB1|CCDS3474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	8	12	0	0	./.	2	8	4	10	34	38	34	38	4	10	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783250328	4	47717616	C	CA	300	PASS	CORIN	CCDS3477.1	r.?	-	-	Ins	intronic	I	47717616	47717626	1	12	260.455	-	-	9	1	1	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	27	19	28	0	0	./.	2	3	2	3	34	44	35	44	2	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783260001	4	72598707	G	GT	264	PASS	-	-	-	-	-	Ins	-	I	72598707	72598717	1	10	265.873	-	-	9	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	4	1	5	1	32	43	33	43	5	1	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783270291	4	102068866	AAC	A	300	PASS	PPP3CA	CCDS34037.1	r.?	-	-	Del	intronic	D	102068866	102068883	2	12	268.281	-	-	8	1	-	PPP3CA|CCDS34037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP3CA|CCDS34037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	3	2	3	2	32	33	32	33	3	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783277506	4	123263493	T	TTTTA	300	PASS	KIAA1109	CCDS43267.1	r.?	-	-	Ins	intronic	I	123263493	123263521	4	6	256.842	-	-	6	1	-	KIAA1109|CCDS43267.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1109|CCDS43267.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	16	28	16	0	0	./.	5	0	1	0	41	27	41	27	6	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783282021	4	134847819	CT	C	780	PASS	-	-	-	-	-	Del	-	D	134847819	134847821	1	54	696.689	-	-	1	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	8	5	11	8	32	38	32	38	11	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783282189	4	135393633	G	GGAAGGAAGGGAAAGAGAAAGAGAGA	540	PASS	-	-	-	-	-	Ins	-	I	135393633	135393643	25	30	348.527	-	-	0	1	1	-	-	./.	0	0	0	0	17	24	18	24	0	0	./.	4	5	0	0	38	34	38	34	4	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783287505	4	150785561	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	150785561	150785567	1	12	265.271	-	-	5	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	2	3	4	26	25	26	25	3	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783290000	4	157035555	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	157035555	157035562	1	25	425.397	-	-	6	1	1	-	-	./.	0	0	0	0	23	10	23	10	0	0	./.	4	4	6	5	43	24	44	24	6	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783295775	4	171667161	AATATGCT	A	319	PASS	-	-	-	-	-	Del	-	D	171667161	171667170	7	42	591.544	-	-	1	1	1	-	-	./.	0	0	0	0	8	18	8	18	0	0	./.	6	5	8	6	23	36	23	36	8	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783298595	4	178920471	AC	A	409	PASS	-	-	-	-	-	Del	-	D	178920471	178920473	1	20	1021.76	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	19	0	20	0	48	11	48	11	20	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783305670	5	1043298	AGT	A	449	PASS	NKD2	CCDS3859.1	r.?	-	-	Del	downstream	D	1043298	1043306	2	25	428.805	-	-	3	1	-	NKD2|CCDS3859.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NKD2|CCDS3859.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	33	33	33	46	0	0	./.	4	4	5	4	68	57	68	70	6	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783311083	5	14480126	GAGGTGGCGGGACAAACTCTGGTGTCAGGAGTGAGTTTGCTGAG	GTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA	300	PASS	TRIO	CCDS3883.1	r.6360+7_6360+49del43insuggcgggacagacucuggugucaggagugaguuugcugaa	c.6336+7_6336+49del43insTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA	p.?	Complex	splice region	DI	14480127	14480169	43	12	0	-	-	0	1	1	TRIO|CCDS3883.1|r.6360+7_6360+49del43insuggcgggacagacucuggugucaggagugaguuugcugaa|c.6336+7_6336+49del43insTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:indel:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:1000032:SO:CGPX04:SO:0001627:SO:0001576	TRIO|CCDS3883.1|r.6360+7_6360+49del43insuggcgggacagacucuggugucaggagugaguuugcugaa|c.6336+7_6336+49del43insTGGCGGGACAGACTCTGGTGTCAGGAGTGAGTTTGCTGAA|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:indel:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:1000032:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	16	10	16	10	0	0	./.	3	2	0	0	43	30	46	32	3	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783314567	5	22831849	C	CA	480	PASS	CDH12	CCDS3890.1	r.?	-	-	Ins	intronic	I	22831849	22831858	1	24	425.794	-	-	8	1	1	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CDH12|CCDS3890.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	5	3	5	8	29	20	31	20	5	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783315141	5	24344805	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	24344805	24344812	1	27	532.243	-	-	6	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	2	8	5	10	29	44	30	44	5	10	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783323465	5	43931706	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	43931706	43931713	1	14	370.162	-	-	6	1	1	-	-	./.	0	0	0	0	17	19	17	20	0	0	./.	1	6	4	8	26	37	26	37	4	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783325340	5	52846918	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	52846918	52846927	1	56	691.916	-	-	8	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	6	7	8	9	46	58	46	59	8	9	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783327257	5	56966088	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	56966088	56966108	2	12	263.111	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	5	2	33	36	33	36	5	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783327911	5	58843119	G	GT	420	PASS	PDE4D	CCDS47213.1	r.?	-	-	Ins	intronic	I	58843119	58843126	1	20	372.57	-	-	6	1	1	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE4D|CCDS47213.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	4	3	6	5	29	25	29	25	6	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783332223	5	71741197	G	GGC	327	PASS	ZNF366	CCDS4015.1	r.?	-	-	Ins	intronic	I	71741197	71741198	2	14	367.151	-	-	0	1	1	ZNF366|CCDS4015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF366|CCDS4015.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	17	0	0	./.	1	6	0	0	30	50	30	50	1	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783334424	5	77420183	A	AAC	503	PASS	AP3B1	CCDS4041.1	r.?	-	-	Ins	intronic	I	77420183	77420201	2	30	472.998	-	-	8	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	4	5	6	6	43	39	43	40	6	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783336806	5	82480909	GA	G	300	PASS	XRCC4	CCDS4058.1	r.?	-	-	Del	intronic	D	82480909	82480912	1	10	269.132	-	-	2	1	1	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XRCC4|CCDS4058.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	1	4	1	5	14	30	14	30	1	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783342419	5	99182455	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	99182455	99182464	1	20	372.57	-	-	8	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	4	4	4	30	35	31	36	4	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783344923	5	106183887	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	106183887	106183894	1	15	319.346	-	-	6	1	1	-	-	./.	0	0	0	0	16	16	17	17	0	0	./.	2	4	4	4	37	34	37	35	4	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783356995	5	139494992	C	CA	360	PASS	PURA	CCDS4220.1	r.1285_1286insa	c.?	p.?	Ins	3'UTR variant	I	139494992	139495001	1	16	315.733	-	-	8	1	1	PURA|CCDS4220.1|r.1285_1286insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	PURA|CCDS4220.1|r.1285_1286insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	15	13	15	13	0	0	./.	3	3	3	3	24	34	25	34	3	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783371048	5	174617874	T	TA	298	PASS	-	-	-	-	-	Ins	-	I	174617874	174617883	1	15	306.702	-	-	8	1	1	-	-	./.	0	0	0	0	27	5	29	5	0	0	./.	2	4	7	3	36	22	38	22	7	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783376184	6	6034691	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	6034691	6034701	1	12	266.56	-	-	9	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	2	3	3	3	25	37	25	37	3	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783381387	6	19115089	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	19115089	19115096	1	12	266.56	-	-	6	1	1	-	-	./.	0	0	0	0	27	24	27	25	0	0	./.	3	2	4	3	25	17	26	17	4	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783386091	6	31036066	AG	A	300	PASS	-	-	-	-	-	Del	-	D	31036066	31036072	1	6	269.57	-	-	5	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	5	0	1	0	14	10	14	10	6	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783391480	6	42656915	GAC	G	480	PASS	UBR2	CCDS4870.1	r.?	-	-	Del	intronic	D	42656915	42656919	2	24	430.108	-	-	1	1	1	UBR2|CCDS4870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBR2|CCDS4870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	5	3	8	5	22	17	22	17	8	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783393951	6	50147628	GTTTTC	G	360	PASS	-	-	-	-	-	Del	-	D	50147628	50147641	5	16	323.484	-	-	2	1	1	-	-	./.	0	0	0	0	24	24	24	24	0	0	./.	3	3	7	5	27	24	27	24	7	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783400655	6	69838460	CAAAAG	C	327	PASS	BAI3	CCDS4968.1	r.?	-	-	Del	intronic	D	69838460	69838475	5	18	377.398	-	-	2	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	2	5	4	6	24	17	24	17	4	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783400879	6	70495234	G	GAT	480	PASS	LMBRD1	CCDS4969.1	r.?	-	-	Ins	intronic	I	70495234	70495239	2	21	421.679	-	-	2	1	1	LMBRD1|CCDS4969.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMBRD1|CCDS4969.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	2	6	4	7	30	29	31	29	4	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783433471	7	4217055	GC	G	840	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	4217055	4217061	1	63	753.744	-	-	5	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	8	6	11	8	45	35	45	35	11	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783437362	7	12433149	T	TA	420	PASS	VWDE	CCDS47544.1	r.?	-	-	Ins	intronic	I	12433149	12433155	1	20	372.357	-	-	5	1	1	VWDE|CCDS47544.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VWDE|CCDS47544.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	24	12	24	0	0	./.	3	4	4	8	38	38	38	39	5	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783439130	7	17079984	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	17079984	17080001	2	10	268.807	-	-	8	1	-	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	4	1	4	1	35	33	35	33	4	1	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783439476	7	17989273	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	17989273	17989282	1	12	315.464	-	-	8	1	1	-	-	./.	0	0	0	0	23	32	23	32	0	0	./.	1	5	3	7	32	35	33	35	3	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783446493	7	35811727	TGTAA	T	420	PASS	-	-	-	-	-	Del	-	D	35811727	35811734	4	18	375.969	-	-	1	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	5	2	5	2	38	22	38	22	5	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783450884	7	46988847	CG	C	600	PASS	-	-	-	-	-	Del	-	D	46988847	46988849	1	27	536.41	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	8	2	9	2	36	26	36	26	9	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783453127	7	52956982	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	52956982	52956992	1	10	265.797	-	-	9	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	1	4	1	4	36	35	36	35	1	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783455188	7	57340566	ACTT	A	449	PASS	-	-	-	-	-	Del	-	D	57340566	57340576	3	21	430.453	-	-	3	1	1	-	-	./.	0	0	0	0	24	20	24	20	0	0	./.	6	2	9	2	46	21	46	21	9	2	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783476913	7	117129115	G	GA	300	PASS	CFTR	CCDS5773.1	r.?	-	-	Ins	intronic	I	117129115	117129125	1	6	266.399	-	-	9	1	1	CFTR|CCDS5773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CFTR|CCDS5773.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	5	0	5	0	27	36	27	36	5	0	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783487801	7	148028604	ATGGATGGATGGAATGGATGGACGGATGGAG	A	276	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	148028604	148028652	30	35	508.114	-	-	1	1	-	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	19	28	19	0	0	./.	6	4	0	0	60	35	63	35	6	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783491650	7	157687742	CT	C	1140	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	157687742	157687744	1	104	1017.13	-	-	1	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	12	7	18	11	40	37	40	37	18	11	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783506002	8	39021149	A	AGCATCATCTAGATAACAGTT	261	PASS	ADAM32	CCDS47846.1	r.?	-	-	Ins	intronic	I	39021149	39021172	20	28	377.51	-	-	1	1	1	ADAM32|CCDS47846.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAM32|CCDS47846.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	26	23	26	0	0	./.	6	3	2	2	86	66	90	67	6	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783513467	8	66793217	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	66793217	66793226	1	12	319.706	-	-	8	1	-	-	-	./.	0	0	0	0	29	13	29	13	0	0	./.	1	5	2	7	38	32	38	32	2	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783516858	8	76488866	TG	T	449	PASS	-	-	-	-	-	Del	-	D	76488866	76488872	1	16	431.292	-	-	5	1	1	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	7	1	7	1	35	22	35	22	7	1	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783521289	8	90506688	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	90506688	90506697	1	25	426.475	-	-	8	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	4	7	5	44	33	44	33	7	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783535516	8	131338253	G	GA	600	PASS	ASAP1	CCDS6362.1	r.?	-	-	Ins	intronic	I	131338253	131338258	1	27	530.836	-	-	4	1	1	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASAP1|CCDS6362.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	2	8	2	9	33	29	33	29	2	9	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783538242	8	139323876	AT	A	1320	PASS	FAM135B	CCDS6375.2	r.?	-	-	Del	intronic	D	139323876	139323879	1	143	1186.5	-	-	2	1	1	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM135B|CCDS6375.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	10	12	11	14	39	39	39	39	11	14	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783539317	8	142038092	ACAGTAGT	ACAAAGT	294	PASS	-	-	-	-	-	Complex	-	DI	142038093	142038099	7	24	0	-	-	0	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	3	5	0	0	40	39	40	39	3	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783558653	9	72600260	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	72600260	72600261	1	20	371.151	-	-	0	1	1	-	-	./.	0	0	0	0	25	13	25	13	0	0	./.	3	4	4	4	28	23	28	23	4	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783560059	9	76684983	AG	A	480	PASS	-	-	-	-	-	Del	-	D	76684983	76684986	1	21	432.43	-	-	2	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	6	2	7	4	28	13	28	13	7	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783562573	9	84364116	T	TC	389	PASS	-	-	-	-	-	Ins	-	I	84364116	84364117	1	20	366.335	-	-	0	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	4	3	8	4	30	13	30	13	8	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783562714	9	84948062	C	CTT	960	PASS	-	-	-	-	-	Ins	-	I	84948062	84948064	2	81	841.981	-	-	1	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	8	8	9	12	12	28	13	28	9	12	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783565072	9	92077887	AG	A	275	PASS	SEMA4D	CCDS6685.1	r.?	-	-	Del	intronic	D	92077887	92077892	1	16	318.904	-	-	4	1	1	SEMA4D|CCDS6685.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEMA4D|CCDS6685.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	13	11	0	0	./.	3	3	4	6	14	15	18	15	4	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783569800	9	107449139	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	107449139	107449146	1	24	427.011	-	-	6	1	1	-	-	./.	0	0	0	0	20	13	21	14	0	0	./.	3	5	6	6	22	20	23	20	6	6	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783576886	9	128143927	AT	A	300	PASS	-	-	-	-	-	Del	-	D	128143927	128143929	1	12	267.86	-	-	1	1	1	-	-	./.	0	0	0	0	3	15	3	15	0	0	./.	2	3	2	3	18	26	18	26	2	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783584550	X	17807300	CG	C	360	PASS	-	-	-	-	-	Del	-	D	17807300	17807303	1	15	324.541	-	-	2	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	4	2	5	14	18	14	18	2	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783585087	X	22146968	AC	A	300	PASS	PHEX	CCDS14204.1	r.?	-	-	Del	intronic	D	22146968	22146977	1	10	271.455	-	-	8	1	1	PHEX|CCDS14204.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHEX|CCDS14204.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	1	4	1	7	12	21	12	21	1	7	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783588835	X	45164799	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	45164799	45164808	1	24	427.705	-	-	8	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	3	5	7	8	30	17	30	18	7	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783589418	X	47900394	G	GT	720	PASS	-	-	-	-	-	Ins	-	I	47900394	47900403	1	49	641.256	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	6	13	11	23	30	23	30	13	11	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783594411	X	83541616	TC	T	480	PASS	-	-	-	-	-	Del	-	D	83541616	83541618	1	24	432.521	-	-	1	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	3	5	3	5	13	13	13	13	3	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783595511	X	88775813	AT	A	450	PASS	-	-	-	-	-	Del	-	D	88775813	88775820	1	56	703.374	-	-	6	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	7	7	8	13	16	13	16	7	8	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783596229	X	93407879	CT	C	600	PASS	-	-	-	-	-	Del	-	D	93407879	93407885	1	35	540.501	-	-	5	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	4	6	4	18	17	18	17	6	4	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783601992	X	126154491	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	126154491	126154501	1	35	536.889	-	-	9	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	6	4	6	5	19	9	19	9	6	5	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783608171	Y	13143192	ATGCACACTGGCTGGAGTGCAGTGGCACAATATCAGCATGACATTTCATTTCTCCATTTCATTCCATCCATATCATTCCATTCCCCTCAACTGCACTCCACTCCTGTCCTCTTCTCTCCACTCCATTCCATTCCACTCCATATCCATTCCATTCCTTTTCTTCGACAGGATCTCGCTC	A	265	PASS	-	-	-	-	-	Del	-	D	13143192	13143372	177	20	383.635	-	-	1	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	4	3	0	0	17	18	17	18	4	3	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783609429	Y	13689603	G	GTGGAATCGAGTGGAT	526	PASS	-	-	-	-	-	Ins	-	I	13689603	13689616	15	87	1372.62	-	-	0	1	1	-	-	./.	0	0	0	0	49	20	54	20	0	0	./.	2	28	1	0	172	266	222	299	3	28	1	1	1	1	1	1	1	1
2825790	PD20343a	PD20343b	2783609492	Y	13707103	AAATGG	A	275	PASS	-	-	-	-	-	Del	-	D	13707103	13707125	5	28	766.667	-	-	4	1	1	-	-	./.	0	0	0	0	38	22	38	22	0	0	./.	1	13	7	25	69	73	69	73	7	25	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769097633	1	99313778	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	99313778	99313785	1	21	424.715	-	-	6	1	1	-	-	./.	0	0	0	0	28	18	28	19	0	0	./.	6	2	8	6	30	18	30	18	8	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769099439	1	104928511	CT	C	360	PASS	-	-	-	-	-	Del	-	D	104928511	104928516	1	16	322.149	-	-	4	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	3	3	6	3	34	16	34	16	6	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769117719	1	176065404	C	CT	300	PASS	RFWD2	CCDS30944.1	r.?	-	-	Ins	intronic	I	176065404	176065414	1	12	265.447	-	-	9	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	22	16	22	0	0	./.	3	2	4	2	38	34	39	35	4	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769126862	1	203642074	AT	A	420	PASS	ATP2B4	CCDS1440.1	r.?	-	-	Del	intronic	D	203642074	203642076	1	18	375.238	-	-	1	1	1	ATP2B4|CCDS1440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATP2B4|CCDS1440.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	5	2	5	5	23	24	23	24	5	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769135188	1	228166994	ATTC	A	263	PASS	-	-	-	-	-	Del	-	D	228166994	228167000	3	20	371.626	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	4	5	5	9	24	9	24	5	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769135268	1	228615650	CTG	C	420	PASS	HIST3H3	CCDS1572.1	r.?	-	-	Del	upstream	D	228615650	228615654	2	18	375.238	-	-	1	1	1	HIST3H3|CCDS1572.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HIST3H3|CCDS1572.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	22	16	22	16	0	0	./.	5	2	7	6	27	16	27	16	7	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769137686	1	235844376	A	AAG	478	PASS	LYST	CCDS31062.1	r.?	-	-	Ins	intronic	I	235844376	235844380	2	24	470.58	-	-	1	1	1	LYST|CCDS31062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LYST|CCDS31062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	2	7	3	9	11	21	11	21	3	9	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769144793	10	3989639	CTAA	C	509	PASS	-	-	-	-	-	Del	-	D	3989639	3989649	3	30	484.682	-	-	3	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	4	5	5	6	22	19	22	19	5	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769151422	10	20436537	T	TA	420	PASS	PLXDC2	CCDS7132.1	r.?	-	-	Ins	intronic	I	20436537	20436546	1	20	372.159	-	-	8	1	1	PLXDC2|CCDS7132.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXDC2|CCDS7132.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	4	3	8	4	30	22	30	22	8	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769174711	10	88754939	C	CTCATTAACA	261	PASS	AC025268.1	ENST00000513247	r.?	-	-	Ins	intronic	I	88754939	88754950	9	30	435.915	-	-	1	1	1	AC025268.1|ENST00000513247|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC025268.1|ENST00000513247|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	24	26	24	0	0	./.	4	5	3	5	30	26	30	26	4	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769177170	10	95993221	CT	C	420	PASS	PLCE1	CCDS41552.1	r.?	-	-	Del	intronic	D	95993221	95993226	1	14	376.373	-	-	4	1	1	PLCE1|CCDS41552.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCE1|CCDS41552.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	14	25	14	0	0	./.	1	6	5	8	14	24	14	24	5	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769184824	10	118821180	C	CT	774	PASS	-	-	-	-	-	Ins	-	I	118821180	118821182	1	54	692.27	-	-	1	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	5	8	7	9	31	29	31	29	7	9	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769190612	10	134668812	C	CA	300	PASS	C10orf92	ENST00000368586	r.?	-	-	Ins	intronic	I	134668812	134668817	1	10	266.258	-	-	4	1	1	C10orf92|ENST00000368586|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf92|ENST00000368586|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	27	24	27	0	0	./.	1	4	1	7	23	26	25	27	1	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769193796	11	7996187	TA	T	360	PASS	-	-	-	-	-	Del	-	D	7996187	7996195	1	15	322.992	-	-	7	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	2	4	10	6	23	16	23	16	10	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769210435	11	59153227	TC	T	400	PASS	-	-	-	-	-	Del	-	D	59153227	59153229	1	21	429.652	-	-	1	1	1	-	-	./.	0	0	0	0	26	18	26	18	0	0	./.	6	2	7	2	20	14	20	14	7	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769216587	11	76659307	GTA	G	269	PASS	ACER3	CCDS8247.1	r.?	-	-	Del	intronic	D	76659307	76659310	2	6	260.631	-	-	1	1	-	ACER3|CCDS8247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACER3|CCDS8247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	5	0	6	0	22	16	22	16	6	0	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769216600	11	76685766	CTTAA	C	329	PASS	ACER3	CCDS8247.1	r.?	-	-	Del	intronic	D	76685766	76685774	4	16	322.992	-	-	1	1	1	ACER3|CCDS8247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACER3|CCDS8247.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	23	21	23	0	0	./.	3	3	4	5	17	19	17	19	4	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769218339	11	82049020	AT	A	749	PASS	AP002802.1	ENST00000500502	r.?	-	-	Del	intronic	D	82049020	82049025	1	56	701.12	-	-	4	1	1	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	7	6	8	7	23	27	23	27	8	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769229033	11	114807417	AG	A	360	PASS	-	-	-	-	-	Del	-	D	114807417	114807419	1	16	322.992	-	-	1	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	3	3	3	4	21	15	21	15	3	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769230865	11	119401814	TC	T	720	PASS	-	-	-	-	-	Del	-	D	119401814	119401816	1	48	645.984	-	-	1	1	1	-	-	./.	0	0	0	0	17	27	17	27	0	0	./.	7	5	8	8	28	21	28	21	8	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769234263	11	129690030	GA	G	615	PASS	TMEM45B	CCDS8482.1	r.?	-	-	Del	intronic	D	129690030	129690034	1	42	583.02	-	-	3	1	1	TMEM45B|CCDS8482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMEM45B|CCDS8482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	6	5	8	7	25	14	25	14	8	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769249171	12	34511327	TG	T	269	PASS	-	-	-	-	-	Del	-	D	34511327	34511337	1	12	250.544	-	-	9	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	3	2	3	2	24	27	24	27	3	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769249895	12	39621061	CA	C	300	PASS	-	-	-	-	-	Del	-	D	39621061	39621066	1	12	269.809	-	-	4	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	3	2	6	3	20	17	20	17	6	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769252053	12	46328256	TCTTTC	T	267	PASS	SFRS2IP	CCDS8748.2	r.725_729delGAAAG	c.491_495delGAAAG	p.G164fs*9	Del	frameshift	D	46328256	46328264	5	16	323.771	-	-	1	1	1	SFRS2IP|CCDS8748.2|r.725_729delGAAAG|c.491_495delGAAAG|p.G164fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SFRS2IP|CCDS8748.2|r.725_729delGAAAG|c.491_495delGAAAG|p.G164fs*9|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	28	15	28	15	0	0	./.	3	3	3	3	18	26	18	26	3	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769260098	12	69348731	GCCAGCACC	G	319	PASS	-	-	-	-	-	Del	-	D	69348731	69348740	8	42	589.366	-	-	1	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	5	6	5	6	23	18	23	18	5	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769271402	12	104681260	G	GTGT	600	PASS	TXNRD1	ENST00000429002	r.?	-	-	Ins	intronic	I	104681260	104681266	3	36	521.557	-	-	1	1	1	TXNRD1|ENST00000429002|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TXNRD1|ENST00000429002|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	22	15	22	0	0	./.	5	5	9	8	24	24	24	24	9	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769278328	12	123285275	C	CA	360	PASS	CCDC62	CCDS9238.1	r.?	-	-	Ins	intronic	I	123285275	123285284	1	12	320.159	-	-	8	1	1	CCDC62|CCDS9238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCDC62|CCDS9238.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	15	26	15	0	0	./.	5	1	8	2	16	17	16	17	8	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769297682	13	63172891	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	63172891	63172899	1	20	373.395	-	-	7	1	1	-	-	./.	0	0	0	0	20	30	21	30	0	0	./.	4	3	7	4	27	19	28	19	7	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769299208	13	68132580	G	GAT	360	PASS	-	-	-	-	-	Ins	-	I	68132580	68132596	2	12	317.472	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	5	1	5	3	23	19	24	20	5	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769312360	13	108011645	CT	C	840	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	intronic	D	108011645	108011647	1	63	757.626	-	-	1	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	6	8	7	10	13	20	13	20	7	10	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769318930	14	31040270	CTG	C	360	PASS	G2E3	CCDS9638.1	r.?	-	-	Del	intronic	D	31040270	31040276	2	16	321.821	-	-	2	1	1	G2E3|CCDS9638.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	G2E3|CCDS9638.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	38	21	38	21	0	0	./.	3	3	3	3	16	14	16	14	3	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769334915	14	75431143	GAA	G	660	PASS	-	-	-	-	-	Del	-	D	75431143	75431146	2	30	595.525	-	-	2	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	9	2	10	2	31	10	31	10	10	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769376229	16	451148	TTTTTTTTGTTTTTG	T	841	PASS	DECR2	CCDS10409.1	r.?	-	-	Del	upstream	D	451148	451168	14	234	1559.83	-	-	1	1	1	DECR2|CCDS10409.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DECR2|CCDS10409.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	16	15	16	15	0	0	./.	12	17	12	16	25	41	25	42	12	17	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769387106	16	21539924	T	TG	346	PASS	ENSG00000217794	ENST00000403120	r.?	-	-	Ins	downstream	I	21539924	21539925	1	12	319.049	-	-	0	1	1	ENSG00000217794|ENST00000403120|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000217794|ENST00000403120|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	50	46	50	46	0	0	./.	1	5	2	7	81	81	82	81	2	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769388961	16	24947773	CG	C	480	PASS	ARHGAP17	CCDS32409.1	r.?	-	-	Del	intronic	D	24947773	24947775	1	24	432.623	-	-	1	1	1	ARHGAP17|CCDS32409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP17|CCDS32409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	13	23	13	0	0	./.	5	3	9	4	49	25	49	25	9	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769392822	16	32344829	C	CTCA	275	PASS	-	-	-	-	-	Ins	-	I	32344829	32344834	3	11	522.115	-	-	1	1	-	-	-	./.	0	0	0	0	68	61	68	61	0	0	./.	10	0	15	0	92	79	93	79	15	0	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769396309	16	47636842	GTC	G	269	PASS	PHKB	CCDS42161.1	r.?	-	-	Del	intronic	D	47636842	47636860	2	10	263.165	-	-	8	1	-	PHKB|CCDS42161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHKB|CCDS42161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	4	1	4	2	36	34	36	34	4	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769415302	17	15903980	A	AT	300	PASS	TTC19	CCDS11174.1	r.?	-	-	Ins	intronic	I	15903980	15903990	1	10	266.943	-	-	9	1	1	TTC19|CCDS11174.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC19|CCDS11174.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	24	23	24	0	0	./.	1	4	1	4	31	32	31	32	1	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769416368	17	18921371	C	CGCCT	329	PASS	SLC5A10	CCDS11201.2	r.?	-	-	Ins	intronic	I	18921371	18921385	4	16	302.992	-	-	3	1	1	SLC5A10|CCDS11201.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC5A10|CCDS11201.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	22	14	22	0	0	./.	3	3	6	4	32	22	32	24	6	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769416703	17	19968050	TTACA	T	476	PASS	CYTSB	ENST00000395530	r.?	-	-	Del	intronic	D	19968050	19968055	4	20	540.508	-	-	1	1	1	CYTSB|ENST00000395530|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CYTSB|ENST00000395530|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	9	1	10	3	20	18	20	18	10	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769418034	17	22005983	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	22005983	22005985	1	35	534.487	-	-	1	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	4	6	6	11	16	24	16	24	6	11	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769423038	17	37793259	T	TA	480	PASS	STARD3	CCDS11341.1	r.?	-	-	Ins	upstream	I	37793259	37793261	1	21	427.469	-	-	1	1	1	STARD3|CCDS11341.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	STARD3|CCDS11341.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	20	16	20	16	0	0	./.	2	6	6	8	19	23	19	23	6	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769441263	18	1739287	TTTTG	T	478	PASS	-	-	-	-	-	Del	-	D	1739287	1739303	4	24	487.485	-	-	3	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	7	2	7	4	32	14	33	14	8	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769456972	18	51134393	TG	T	420	PASS	-	-	-	-	-	Del	-	D	51134393	51134396	1	20	379.155	-	-	2	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	4	3	4	3	18	20	18	20	4	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769472186	19	12138001	TA	T	720	PASS	ZNF433	CCDS45983.1	r.?	-	-	Del	intronic	D	12138001	12138007	1	49	644.799	-	-	5	1	1	ZNF433|CCDS45983.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000219665|ENST00000406892|r.1250delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	18	22	18	22	0	0	./.	6	6	9	6	22	19	22	19	9	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769493940	2	9797617	ACT	A	840	PASS	-	-	-	-	-	Del	-	D	9797617	9797622	2	60	749.034	-	-	2	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	5	9	5	10	20	24	20	24	5	10	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769497323	2	20216731	ATT	A	300	PASS	MATN3	CCDS46226.1	r.?	-	-	Del	upstream	D	20216731	20216735	2	10	267.985	-	-	3	1	1	MATN3|CCDS46226.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	MATN3|CCDS46226.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	27	17	27	0	0	./.	1	4	3	5	15	26	15	26	3	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769500839	2	29889182	C	CT	600	PASS	ALK	CCDS33172.1	r.?	-	-	Ins	intronic	I	29889182	29889191	1	35	528.143	-	-	8	1	1	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALK|CCDS33172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	27	26	27	0	0	./.	4	6	6	8	26	29	26	29	6	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769504061	2	38658382	CA	C	360	PASS	-	-	-	-	-	Del	-	D	38658382	38658390	1	16	321.101	-	-	7	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	3	3	4	7	15	23	15	23	4	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769506008	2	43647750	G	GT	420	PASS	THADA	CCDS46268.1	r.?	-	-	Ins	intronic	I	43647750	43647756	1	20	371.808	-	-	5	1	1	THADA|CCDS46268.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THADA|CCDS46268.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	3	4	7	4	24	20	24	20	7	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769509773	2	55397432	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	55397432	55397435	1	16	316.886	-	-	2	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	3	3	3	4	27	38	27	39	3	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769510819	2	58776342	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	58776342	58776352	1	10	265.577	-	-	9	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	1	4	2	4	22	39	23	39	2	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769552160	2	190082229	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	190082229	190082248	2	12	267.383	-	-	9	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	3	2	3	2	23	22	23	22	3	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769574813	20	13096225	GA	G	660	PASS	SPTLC3	CCDS13115.2	r.?	-	-	Del	intronic	D	13096225	13096227	1	42	596.567	-	-	1	1	1	SPTLC3|CCDS13115.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPTLC3|CCDS13115.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	5	6	7	9	21	18	21	18	7	9	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769584657	20	42198527	GGTAAACAGAGACCTCAAGGCCACCTGGTGACCCAGA	G	290	PASS	SGK2	CCDS13321.1	r.?	-	-	Del	intronic	D	42198527	42198564	36	35	542.881	-	-	1	1	1	SGK2|CCDS13321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGK2|CCDS13321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	4	0	1	12	9	18	12	6	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769587462	20	49373039	CG	C	720	PASS	PARD6B	CCDS33485.1	r.?	-	-	Del	downstream	D	49373039	49373042	1	48	638.814	-	-	2	1	1	PARD6B|CCDS33485.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PARD6B|ENST00000396039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	7	5	8	7	17	23	17	23	8	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769599355	21	23752464	A	AGATGC	898	PASS	-	-	-	-	-	Ins	-	I	23752464	23752471	5	72	820.518	-	-	1	1	1	-	-	./.	0	0	0	0	21	34	21	34	0	0	./.	5	11	6	11	15	26	15	26	6	11	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769603287	21	34372953	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	34372953	34372963	1	12	266.835	-	-	9	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	2	3	3	5	17	29	17	29	3	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769630631	3	36581579	CAG	C	360	PASS	STAC	CCDS2662.1	r.?	-	-	Del	intronic	D	36581579	36581595	2	15	320.68	-	-	7	1	1	STAC|CCDS2662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAC|CCDS2662.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	4	2	4	2	16	24	16	24	4	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769635254	3	51155713	T	TA	480	PASS	DOCK3	CCDS46835.1	r.?	-	-	Ins	intronic	I	51155713	51155716	1	24	424.161	-	-	2	1	1	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK3|CCDS46835.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	30	15	30	0	0	./.	3	5	3	5	24	19	24	19	3	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769670491	3	169181188	G	GA	480	PASS	MECOM	ENST00000494292	r.?	-	-	Ins	intronic	I	169181188	169181196	1	24	425.968	-	-	7	1	1	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	17	26	17	0	0	./.	3	5	8	5	24	20	24	20	8	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769682798	4	7979084	TAC	T	389	PASS	ABLIM2	CCDS47015.1	r.?	-	-	Del	intronic	D	7979084	7979094	2	20	367.022	-	-	4	1	-	ABLIM2|CCDS47015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABLIM2|CCDS47015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	22	12	22	0	0	./.	4	3	6	4	23	20	23	20	6	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769685295	4	15897860	TC	T	420	PASS	-	-	-	-	-	Del	-	D	15897860	15897866	1	20	376.655	-	-	5	1	1	-	-	./.	0	0	0	0	28	26	28	26	0	0	./.	4	3	7	4	17	18	17	18	7	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769701743	4	66086845	TCTTA	T	509	PASS	-	-	-	-	-	Del	-	D	66086845	66086855	4	30	484.271	-	-	2	1	1	-	-	./.	0	0	0	0	21	28	21	28	0	0	./.	4	5	5	6	26	18	26	18	5	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769707937	4	85477199	AC	A	300	PASS	-	-	-	-	-	Del	-	D	85477199	85477203	1	12	261.213	-	-	3	1	1	-	-	./.	0	0	0	0	29	38	29	38	0	0	./.	2	3	6	8	25	31	25	31	6	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769712802	4	102369322	CT	C	300	PASS	BANK1	ENST00000504592	r.?	-	-	Del	intronic	D	102369322	102369324	1	12	269.039	-	-	1	1	1	BANK1|ENST00000504592|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BANK1|ENST00000504592|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	26	18	26	0	0	./.	3	2	3	3	18	21	18	21	3	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769761026	5	56179417	C	CT	600	PASS	MAP3K1	CCDS43318.1	r.3730_3731insu	c.3730_3731insT	p.K1245fs*28	Ins	frameshift	I	56179417	56179419	1	35	532.753	-	-	1	1	1	MAP3K1|CCDS43318.1|r.3730_3731insu|c.3730_3731insT|p.K1245fs*28|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MAP3K1|CCDS43318.1|r.3730_3731insu|c.3730_3731insT|p.K1245fs*28|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	17	16	17	16	0	0	./.	4	6	5	8	20	22	20	23	5	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769777495	5	110747941	AT	A	660	PASS	CAMK4	CCDS4103.1	r.?	-	-	Del	intronic	D	110747941	110747944	1	36	592.049	-	-	2	1	1	CAMK4|CCDS4103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK4|CCDS4103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	22	22	22	0	0	./.	8	3	10	6	25	17	25	17	10	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769796656	5	172742487	AAC	A	809	PASS	STC2	CCDS4388.1	r.4580_4581delGU	c.?	p.?	Del	3'UTR variant	D	172742487	172742493	2	48	750.069	-	-	2	1	1	STC2|CCDS4388.1|r.4580_4581delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	STC2|CCDS4388.1|r.4580_4581delGU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	18	17	18	0	0	./.	11	3	11	4	26	16	26	16	11	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769807128	6	19692264	TGTGTGTGGTGTGTGTG	T	261	PASS	-	-	-	-	-	Del	-	D	19692264	19692288	16	30	484.304	-	-	1	1	-	-	-	./.	0	0	0	0	15	28	15	28	0	0	./.	5	4	5	4	27	26	27	26	5	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769816978	6	43772487	AGTGCCAGGAAATTGTTGGTCAAAG	A	348	PASS	-	-	-	-	-	Del	-	D	43772487	43772515	24	48	646.542	-	-	1	1	1	-	-	./.	0	0	0	0	24	21	24	21	0	0	./.	7	5	3	1	19	11	23	15	7	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769818067	6	47210362	AG	A	720	PASS	TNFRSF21	CCDS4921.1	r.?	-	-	Del	intronic	D	47210362	47210370	1	40	645.338	-	-	7	1	1	TNFRSF21|CCDS4921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNFRSF21|CCDS4921.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	9	3	11	6	24	24	24	24	11	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769823793	6	65731816	AACTC	A	538	PASS	EYS	CCDS47445.1	r.?	-	-	Del	intronic	D	65731816	65731832	4	32	529.152	-	-	3	1	1	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EYS|CCDS47445.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	3	7	2	8	18	17	18	17	3	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769830271	6	85329983	CT	C	360	PASS	-	-	-	-	-	Del	-	D	85329983	85329993	1	16	322.067	-	-	9	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	3	3	7	3	16	15	16	15	7	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769834058	6	97710442	A	AC	540	PASS	C6orf167	CCDS5039.1	r.?	-	-	Ins	intronic	I	97710442	97710444	1	24	475.273	-	-	1	1	1	C6orf167|CCDS5039.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C6orf167|CCDS5039.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	7	2	8	4	20	22	20	22	8	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769848631	6	148254460	GAGAAAGTGACAATGTAGAAAGAAGATAGGAGACAGTGGGACTATTGAAGAGAGACACCCAATTAAGGAATTTCACAGGAATTTCAACATAGGGTACTGCTAATCCCCTCTTCTAAATGTTTGCTGACAAACGTGTAGAGCTTGTATTAGGGTGGAAACTGGAGCAGGCTAGGGAATAGGGAAGTGGAATTCTACTCTTTCTTTGCTGTATAACCTCAGGCAAAGTATCTTCATTCCTATCCAGCTTTGTGTCTTCATTTGTAAAAGGATTGAGTTAGACTGAGGTGTTGTTTTAGAGGTCCCTTTCGATTCCAAACAATCTAAAATTCTGTGACATCTCAAAATATCCTAGAGTAATGCAAATGCCACTTTTTAATATCTAGCATTAAAAACAACAAAAATAGCAAGGGCTGCTTAC	G	290	PASS	-	-	-	-	-	Del	-	D	148254460	148254880	417	35	538.785	-	-	1	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	6	4	0	0	13	18	19	22	6	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769854153	6	164108562	CT	C	540	PASS	-	-	-	-	-	Del	-	D	164108562	164108564	1	30	484.304	-	-	1	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	5	4	5	15	21	15	21	4	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769874463	7	52619401	A	AAAAAG	360	PASS	-	-	-	-	-	Ins	-	I	52619401	52619426	5	15	305.273	-	-	4	1	-	-	-	./.	0	0	0	0	23	38	24	38	0	0	./.	2	4	3	5	35	32	35	32	3	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769883831	7	77256461	GAT	G	780	PASS	PTPN12	CCDS5592.1	r.1738_1739delAU	c.1466_1467delAT	p.T490fs*39	Del	frameshift	D	77256461	77256465	2	54	700.559	-	-	1	1	1	PTPN12|CCDS5592.1|r.1738_1739delAU|c.1466_1467delAT|p.T490fs*39|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PTPN12|CCDS5592.1|r.1738_1739delAU|c.1466_1467delAT|p.T490fs*39|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	19	17	19	17	0	0	./.	8	5	9	5	24	19	24	19	9	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769900468	7	130561912	TAATGC	T	573	PASS	MIR29B1	ENST00000385015	r.?	-	-	Del	downstream	D	130561912	130561925	5	48	645.466	-	-	2	1	1	MIR29B1|ENST00000385015|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	MIR29A|ENST00000362111|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	10	25	10	25	0	0	./.	5	7	9	6	27	18	27	19	9	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769912584	8	5229642	CT	C	660	PASS	-	-	-	-	-	Del	-	D	5229642	5229651	1	42	591.111	-	-	8	1	1	-	-	./.	0	0	0	0	25	28	25	28	0	0	./.	5	6	12	10	20	24	20	24	12	10	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769931303	8	61880734	TC	T	660	PASS	-	-	-	-	-	Del	-	D	61880734	61880738	1	42	587.499	-	-	3	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	6	5	14	5	51	43	51	43	14	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769931912	8	63544254	GA	G	480	PASS	NKAIN3	ENST00000328472	r.?	-	-	Del	intronic	D	63544254	63544257	1	24	429.571	-	-	2	1	1	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	23	18	23	0	0	./.	3	5	4	11	28	40	28	40	4	11	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769937824	8	76956591	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	76956591	76956606	2	15	323.081	-	-	7	1	-	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	2	4	3	4	42	56	42	56	3	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769954648	8	117129356	C	CT	300	PASS	AF130342.1	ENST00000505156	r.?	-	-	Ins	intronic	I	117129356	117129358	1	10	266.224	-	-	1	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	20	18	0	0	./.	4	1	4	1	51	35	52	35	4	1	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769963534	8	137784165	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	137784165	137784175	1	10	266.224	-	-	9	1	1	-	-	./.	0	0	0	0	18	19	18	20	0	0	./.	1	4	1	4	51	42	51	43	1	4	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769969915	9	8258959	GGAGA	G	569	PASS	-	-	-	-	-	Del	-	D	8258959	8258967	4	35	539.721	-	-	3	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	6	4	7	6	25	18	25	18	7	6	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769977120	9	31415190	GA	G	540	PASS	-	-	-	-	-	Del	-	D	31415190	31415196	1	18	484.485	-	-	5	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	1	8	2	10	11	29	11	29	2	10	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769979580	9	38042079	A	AG	420	PASS	SHB	CCDS43806.1	r.?	-	-	Ins	intronic	I	38042079	38042082	1	20	372.808	-	-	2	1	1	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SHB|CCDS43806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	21	13	21	0	0	./.	4	3	6	3	22	19	22	19	6	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2769996369	9	110897413	CA	C	480	PASS	-	-	-	-	-	Del	-	D	110897413	110897421	1	21	432.259	-	-	7	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	2	9	3	15	24	15	24	9	3	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770006479	9	140530753	AT	A	569	PASS	EHMT1	ENST00000428019	r.?	-	-	Del	intronic	D	140530753	140530762	1	35	539.721	-	-	8	1	1	EHMT1|ENST00000428019|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EHMT1|ENST00000428019|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	23	25	23	0	0	./.	4	6	6	8	20	28	20	28	6	8	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770014271	X	32155198	CT	C	300	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32155198	32155206	1	12	270.297	-	-	7	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	2	3	2	21	17	21	17	3	2	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770016242	X	41193392	TC	T	540	PASS	DDX3X	CCDS43931.1	r.743delC	c.?	p.?	Del	5'UTR variant	D	41193392	41193395	1	24	485.932	-	-	2	1	1	DDX3X|CCDS43931.1|r.743delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	DDX3X|CCDS43931.1|r.743delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	20	29	20	29	0	0	./.	2	7	3	9	14	30	14	30	3	9	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770019473	X	54624105	GC	G	660	PASS	-	-	-	-	-	Del	-	D	54624105	54624110	1	40	594.05	-	-	4	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	7	4	10	5	25	18	25	18	10	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770027177	X	92137605	A	AT	411	PASS	-	-	-	-	-	Ins	-	I	92137605	92137610	1	40	640.885	-	-	4	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	9	3	9	5	35	17	35	17	9	5	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770029897	X	103361484	TC	T	989	PASS	MCART6	CCDS35363.1	r.?	-	-	Del	intronic	D	103361484	103361487	1	78	911.783	-	-	2	1	1	MCART6|CCDS35363.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MCART6|CCDS35363.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	5	12	6	14	19	34	19	34	6	14	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770035099	X	125148570	TG	T	660	PASS	-	-	-	-	-	Del	-	D	125148570	125148573	1	42	594.652	-	-	2	1	1	-	-	./.	0	0	0	0	20	18	20	18	0	0	./.	5	6	9	7	18	26	18	26	9	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770036752	X	132408404	ATAT	A	658	PASS	-	-	-	-	-	Del	-	D	132408404	132408409	3	48	648.712	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	7	5	8	7	30	19	30	19	8	7	1	1	1	1	1	1	1	1
2816927	PD20405a	PD20405b	2770039647	X	143895133	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	143895133	143895141	1	12	266.684	-	-	7	1	1	-	-	./.	0	0	0	0	29	39	29	39	0	0	./.	2	3	2	3	15	25	15	25	2	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783696702	1	25161656	GGC	G	360	PASS	CLIC4	CCDS256.1	r.?	-	-	Del	intronic	D	25161656	25161659	2	7	321.097	-	-	1	1	1	CLIC4|CCDS256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIC4|CCDS256.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	6	0	8	3	34	12	34	12	8	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783708422	1	63636833	TG	T	329	PASS	-	-	-	-	-	Del	-	D	63636833	63636836	1	15	321.097	-	-	2	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	4	2	8	7	40	17	40	17	8	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783712667	1	77978463	TG	T	296	PASS	AK5	CCDS676.1	r.?	-	-	Del	intronic	D	77978463	77978465	1	21	428.129	-	-	1	1	1	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK5|CCDS676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	2	6	3	6	25	26	25	26	3	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783715958	1	88034066	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	88034066	88034085	2	12	265.173	-	-	9	1	-	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	2	3	2	28	21	28	21	3	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783725572	1	119658729	TC	T	360	PASS	WARS2	CCDS30817.1	r.?	-	-	Del	intronic	D	119658729	119658733	1	15	321.097	-	-	3	1	1	WARS2|CCDS30817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WARS2|CCDS30817.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	2	4	4	4	26	22	26	22	4	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783732369	1	156720269	T	TG	360	PASS	HDGF	CCDS1156.1	r.?	-	-	Ins	intronic	I	156720269	156720278	1	15	316.883	-	-	8	1	1	HDGF|CCDS1156.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDGF|CCDS1156.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	2	4	4	5	19	20	19	20	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783736329	1	169742937	TC	T	540	PASS	-	-	-	-	-	Del	-	D	169742937	169742944	1	28	481.043	-	-	6	1	1	-	-	./.	0	0	0	0	12	24	12	24	0	0	./.	3	6	5	6	26	21	26	21	5	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783737325	1	173159055	G	GA	540	PASS	TNFSF4	CCDS1306.1	r.?	-	-	Ins	intronic	I	173159055	173159063	1	30	463.584	-	-	7	1	1	TNFSF4|CCDS1306.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TNFSF4|CCDS1306.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	5	4	9	5	31	19	31	19	9	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783738461	1	177140664	TC	T	869	PASS	FAM5B	CCDS1320.1	r.33delC	c.?	p.?	Del	5'UTR variant	D	177140664	177140667	1	72	798.528	-	-	2	1	1	FAM5B|CCDS1320.1|r.33delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	FAM5B|CCDS1320.1|r.33delC|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	19	15	19	15	0	0	./.	8	7	9	8	30	23	30	23	9	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783739526	1	180396437	C	CT	660	PASS	ACBD6	CCDS1339.1	r.?	-	-	Ins	intronic	I	180396437	180396444	1	36	581.453	-	-	6	1	1	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ACBD6|CCDS1339.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	17	14	0	0	./.	3	8	5	8	23	30	23	30	5	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783739930	1	181536017	GA	G	449	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181536017	181536019	1	25	420.303	-	-	1	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	4	4	5	7	19	18	19	18	5	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783740948	1	185261231	T	TA	269	PASS	IVNS1ABP	CCDS1368.1	r.?	-	-	Ins	downstream	I	185261231	185261233	1	10	263.366	-	-	1	1	1	IVNS1ABP|CCDS1368.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	IVNS1ABP|CCDS1368.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	19	14	19	0	0	./.	1	4	1	4	23	29	23	30	1	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783750673	1	215864985	A	AT	749	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	215864985	215864993	1	56	687.883	-	-	7	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	7	6	10	6	31	28	31	28	10	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783756159	1	233049073	TAG	T	298	PASS	-	-	-	-	-	Del	-	D	233049073	233049079	2	16	321.097	-	-	2	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	3	3	4	5	28	27	28	27	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783759214	1	241377539	AT	A	300	PASS	RGS7	CCDS31071.1	r.?	-	-	Del	intronic	D	241377539	241377548	1	12	266.979	-	-	8	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	3	2	5	6	19	21	19	21	5	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783760984	1	245827311	C	CT	689	PASS	KIF26B	CCDS44342.1	r.?	-	-	Ins	intronic	I	245827311	245827320	1	40	631.357	-	-	8	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	3	9	3	10	40	27	40	28	3	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783772837	10	25070780	T	TTAAATAAA	276	PASS	-	-	-	-	-	Ins	-	I	25070780	25070805	8	35	488.357	-	-	6	1	-	-	-	./.	0	0	0	0	9	13	10	13	0	0	./.	6	4	4	3	28	40	30	41	6	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783777046	10	34540580	CCT	C	269	PASS	PARD3	CCDS7178.1	r.?	-	-	Del	intronic	D	34540580	34540596	2	12	253.209	-	-	7	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	3	36	49	36	49	2	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783778256	10	37688652	GCTTAGAGTAATTTTAATTATAAAAAATTAAAATTA	G	290	PASS	-	-	-	-	-	Del	-	D	37688652	37688717	35	20	536.521	-	-	1	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	1	9	0	4	18	31	19	36	1	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783779741	10	42537846	C	CTG	367	PASS	-	-	-	-	-	Ins	-	I	42537846	42537847	2	16	776.485	-	-	0	1	1	-	-	./.	0	0	0	0	56	11	57	30	0	0	./.	15	0	21	0	159	31	167	53	21	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783782382	10	53333403	A	AT	420	PASS	PRKG1	CCDS7244.1	r.?	-	-	Ins	intronic	I	53333403	53333412	1	20	371.351	-	-	8	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	13	0	0	./.	3	4	5	5	16	19	18	19	5	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783788980	10	73519643	TATACACACACACATATATACACACACAC	T	420	PASS	C10orf54	CCDS31218.1	r.?	-	-	Del	intronic	D	73519643	73519675	28	14	373.759	-	-	1	1	-	C10orf54|CCDS31218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf54|CCDS31218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	6	1	0	0	38	88	38	88	6	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783791246	10	76538490	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	76538490	76538506	2	16	321.913	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	3	5	3	63	54	63	54	5	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783791785	10	77326869	TTC	T	480	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	intronic	D	77326869	77326887	2	24	429.217	-	-	8	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	28	16	28	0	0	./.	5	3	6	5	98	101	98	101	6	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783791797	10	77349794	TG	T	360	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	intronic	D	77349794	77349796	1	7	304.453	-	-	1	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	6	0	11	0	112	24	112	24	11	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783793445	10	80887232	T	TA	480	PASS	ZMIZ1	CCDS7357.1	r.?	-	-	Ins	intronic	I	80887232	80887236	1	24	421.39	-	-	3	1	1	ZMIZ1|CCDS7357.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZMIZ1|CCDS7357.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	14	0	0	./.	5	3	9	12	82	82	83	82	9	12	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783793570	10	81137153	GAT	G	435	PASS	ZCCHC24	CCDS7359.1	r.?	-	-	Del	downstream	D	81137153	81137156	2	72	798.761	-	-	1	1	-	ZCCHC24|CCDS7359.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZCCHC24|CCDS7359.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	16	17	16	0	0	./.	7	8	1	1	76	91	77	99	8	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783794054	10	81908380	GGTA	G	598	PASS	ANXA11	CCDS7364.1	r.?	-	-	Del	downstream	D	81908380	81908384	3	40	583.551	-	-	1	1	1	ANXA11|CCDS7364.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ANXA11|CCDS7364.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	10	14	10	14	0	0	./.	4	7	5	8	70	81	70	81	5	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783794126	10	82029124	T	TA	420	PASS	MAT1A	CCDS7365.1	r.?	-	-	Ins	downstream	I	82029124	82029132	1	20	371.351	-	-	7	1	1	MAT1A|CCDS7365.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MAT1A|CCDS7365.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	5	4	89	84	90	85	5	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783794378	10	82469721	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	82469721	82469730	1	10	265.25	-	-	8	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	1	8	3	80	87	80	89	8	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783794999	10	83821628	AAC	A	269	PASS	NRG3	CCDS31233.1	r.?	-	-	Del	intronic	D	83821628	83821648	2	12	262.24	-	-	9	1	-	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	3	2	4	5	82	85	82	85	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783795228	10	84265514	C	CT	449	PASS	NRG3	CCDS31233.1	r.?	-	-	Ins	intronic	I	84265514	84265520	1	25	423.799	-	-	5	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	4	10	4	98	99	100	100	10	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783795776	10	85377802	ATC	A	389	PASS	-	-	-	-	-	Del	-	D	85377802	85377819	2	20	365.33	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	4	5	103	76	103	76	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783796518	10	86774428	AG	A	300	PASS	-	-	-	-	-	Del	-	D	86774428	86774430	1	6	255.015	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	0	9	0	72	107	72	107	9	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783803113	10	108427410	AG	A	480	PASS	SORCS1	CCDS7559.1	r.?	-	-	Del	intronic	D	108427410	108427413	1	25	429.217	-	-	2	1	1	SORCS1|CCDS7559.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SORCS1|CCDS7559.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	12	21	12	0	0	./.	4	4	4	5	13	15	13	15	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783818899	11	23639728	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	23639728	23639736	1	9	425.743	-	-	7	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	0	8	1	10	17	23	18	24	1	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783829052	11	57871064	AT	A	540	PASS	OR9Q1	CCDS31543.1	r.?	-	-	Del	intronic	D	57871064	57871071	1	28	484.379	-	-	6	1	1	OR9Q1|CCDS31543.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OR9Q1|CCDS31543.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	3	6	6	8	22	22	22	22	6	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783833432	11	72516107	ATTC	A	300	PASS	-	-	-	-	-	Del	-	D	72516107	72516113	3	12	269.1	-	-	1	1	1	-	-	./.	0	0	0	0	12	29	12	29	0	0	./.	2	3	4	7	20	43	20	43	4	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783859346	12	20367742	GAA	G	1020	PASS	-	-	-	-	-	Del	-	D	20367742	20367746	2	90	913.644	-	-	3	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	9	8	13	10	28	25	28	25	13	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783864350	12	33425043	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	33425043	33425049	1	16	318.85	-	-	5	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	3	3	4	5	28	33	28	33	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783868559	12	49428083	CTGGGAA	C	348	PASS	MLL2	CCDS44873.1	r.10508-7_10508-2deluuccca	c.10508-7_10508-2delttccca	p.?	Del	ess splice	D	49428083	49428090	6	48	644.925	-	-	1	1	1	MLL2|CCDS44873.1|r.10508-7_10508-2deluuccca|c.10508-7_10508-2delttccca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	MLL2|CCDS44873.1|r.10508-7_10508-2deluuccca|c.10508-7_10508-2delttccca|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	10	16	10	16	0	0	./.	7	5	8	5	26	21	26	21	8	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783877397	12	74375802	G	GC	257	PASS	-	-	-	-	-	Ins	-	I	74375802	74375803	1	18	903.409	-	-	0	1	1	-	-	./.	0	0	0	0	7	14	7	15	0	0	./.	0	17	0	15	46	76	47	83	0	22	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783877484	12	74670941	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	74670941	74670950	1	10	254.872	-	-	8	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	1	4	1	4	45	39	45	39	1	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783880982	12	85763884	TAG	T	480	PASS	-	-	-	-	-	Del	-	D	85763884	85763890	2	21	429.95	-	-	2	1	1	-	-	./.	0	0	0	0	1	13	1	13	0	0	./.	2	6	2	6	11	28	11	28	2	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783881865	12	88992085	GA	G	420	PASS	-	-	-	-	-	Del	-	D	88992085	88992087	1	14	376.206	-	-	1	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	6	1	6	3	16	13	16	13	6	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783883526	12	94690789	GTTC	G	327	PASS	PLXNC1	CCDS9049.1	r.?	-	-	Del	intronic	D	94690789	94690795	3	18	375.604	-	-	1	1	1	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	5	2	6	2	37	37	37	37	6	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783885344	12	100063442	TC	T	1200	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	100063442	100063444	1	117	1074.88	-	-	1	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	8	12	17	15	36	39	36	39	17	15	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783887132	12	104995388	G	GT	600	PASS	CHST11	CCDS9099.1	r.?	-	-	Ins	intronic	I	104995388	104995390	1	27	531.417	-	-	1	1	1	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	15	17	15	0	0	./.	2	8	4	8	40	55	40	55	4	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783888297	12	107620108	TG	T	540	PASS	-	-	-	-	-	Del	-	D	107620108	107620110	1	10	468.643	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	9	0	17	0	36	39	36	39	17	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783888418	12	108004995	CT	C	300	PASS	BTBD11	CCDS31893.1	r.?	-	-	Del	intronic	D	108004995	108005005	1	10	264.504	-	-	9	1	1	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BTBD11|CCDS31893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	1	4	1	5	64	44	64	44	1	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783888696	12	108880617	T	TTG	540	PASS	AC010206.1	ENST00000502160	r.?	-	-	Ins	intronic	I	108880617	108880635	2	28	472.857	-	-	8	1	1	AC010206.1|ENST00000502160|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC010206.1|ENST00000502160|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	19	0	0	./.	3	6	6	7	30	36	31	37	6	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783898804	13	22653788	A	AT	780	PASS	AL137248.1	ENST00000413646	r.?	-	-	Ins	intronic	I	22653788	22653797	1	56	685.65	-	-	8	1	1	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	7	6	8	8	28	31	28	31	8	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783900237	13	25790135	A	AG	269	PASS	-	-	-	-	-	Ins	-	I	25790135	25790136	1	10	253.245	-	-	0	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	4	1	4	1	19	26	19	26	4	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783905094	13	38915620	TA	T	480	PASS	-	-	-	-	-	Del	-	D	38915620	38915623	1	24	421.568	-	-	2	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	3	5	4	6	20	28	20	28	4	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783908614	13	48922031	T	TA	360	PASS	RB1	CCDS31973.1	r.?	-	-	Ins	intronic	I	48922031	48922041	1	7	317.982	-	-	9	1	1	RB1|CCDS31973.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RB1|CCDS31973.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	10	21	11	0	0	./.	0	6	3	8	31	36	31	36	3	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783908835	13	49833983	CA	C	540	PASS	CDADC1	CCDS9415.1	r.?	-	-	Del	intronic	D	49833983	49833985	1	28	480.887	-	-	1	1	1	CDADC1|CCDS9415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDADC1|CCDS9415.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	3	6	6	11	27	39	27	39	6	11	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783911093	13	56352409	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	56352409	56352417	1	28	479.682	-	-	7	1	1	-	-	./.	0	0	0	0	24	9	24	9	0	0	./.	6	3	11	6	36	29	36	29	11	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783918365	13	76382717	T	TG	300	PASS	LMO7	CCDS9454.1	r.?	-	-	Ins	intronic	I	76382717	76382725	1	12	266.49	-	-	7	1	1	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMO7|CCDS9454.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	4	5	26	24	27	24	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783919406	13	79710475	A	AG	418	PASS	-	-	-	-	-	Ins	-	I	79710475	79710482	1	21	426.384	-	-	6	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	2	6	5	9	22	41	22	41	5	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783928027	13	103944416	CA	C	360	PASS	-	-	-	-	-	Del	-	D	103944416	103944422	1	15	323.401	-	-	5	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	4	4	5	25	21	25	21	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783940075	14	45848793	ATTAG	A	389	PASS	-	-	-	-	-	Del	-	D	45848793	45848804	4	14	377.529	-	-	2	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	1	6	3	26	34	26	34	6	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783940607	14	47256835	G	GA	283	PASS	-	-	-	-	-	Ins	-	I	47256835	47256838	1	42	586.637	-	-	2	1	1	-	-	./.	0	0	0	0	26	15	26	15	0	0	./.	5	6	8	8	208	123	211	125	8	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783940873	14	47633835	G	GA	473	PASS	MDGA2	CCDS41948.1	r.?	-	-	Ins	intronic	I	47633835	47633837	1	90	906.019	-	-	1	1	1	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	8	9	9	9	170	174	176	175	12	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783943375	14	51681873	A	AT	377	PASS	-	-	-	-	-	Ins	-	I	51681873	51681875	1	17	853.29	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	13	0	0	./.	16	0	18	1	266	157	269	159	19	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783949889	14	70655837	T	TCTCA	569	PASS	SLC8A3	CCDS35498.1	r.?	-	-	Ins	upstream	I	70655837	70655842	4	35	515.245	-	-	1	1	1	SLC8A3|CCDS35498.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	SLC8A3|CCDS35498.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	16	8	16	8	0	0	./.	4	6	8	9	17	25	17	25	8	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783953871	14	83798374	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	83798374	83798381	1	24	426.645	-	-	6	1	1	-	-	./.	0	0	0	0	11	16	12	16	0	0	./.	3	5	4	6	10	26	10	26	4	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783962593	15	23723810	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	23723810	23723819	1	24	426.108	-	-	8	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	5	3	6	5	27	29	28	30	6	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783982763	15	80703185	ATC	A	269	PASS	ARNT2	CCDS32307.1	r.?	-	-	Del	intronic	D	80703185	80703205	2	10	263.081	-	-	9	1	-	ARNT2|CCDS32307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARNT2|CCDS32307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	18	30	18	0	0	./.	4	1	4	1	35	23	35	23	4	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783983820	15	84575018	T	TC	300	PASS	ADAMTSL3	CCDS10326.1	r.?	-	-	Ins	intronic	I	84575018	84575026	1	10	266.694	-	-	7	1	1	ADAMTSL3|CCDS10326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTSL3|CCDS10326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	3	5	14	35	14	35	3	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783985177	15	88810870	AAG	A	300	PASS	AC009711.1	ENST00000506711	r.?	-	-	Del	intronic	D	88810870	88810876	2	6	268.5	-	-	2	1	-	AC009711.1|ENST00000506711|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC009711.1|ENST00000506711|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	0	5	0	1	26	21	26	21	0	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783986611	15	92746755	TG	T	420	PASS	AC116903.2	ENST00000502597	r.?	-	-	Del	intronic	D	92746755	92746757	1	14	377.586	-	-	1	1	1	AC116903.2|ENST00000502597|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC116903.2|ENST00000502597|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	1	6	3	8	23	37	23	37	3	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783991800	16	4664865	TTAGCGAGCCGG	T	435	PASS	FAM100A	CCDS10518.1	r.52_62delCCGGCUCGCUA	c.?	p.?	Del	5'UTR variant	D	4664865	4664877	11	72	807.942	-	-	1	1	1	FAM100A|CCDS10518.1|r.52_62delCCGGCUCGCUA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	FAM100A|CCDS10518.1|r.52_62delCCGGCUCGCUA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	17	19	17	19	0	0	./.	8	7	8	8	23	25	23	25	8	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783996058	16	14397140	T	TG	540	PASS	MIR193B	ENST00000384907	r.?	-	-	Ins	upstream	I	14397140	14397147	1	28	472.483	-	-	6	1	1	MIR193B|ENST00000384907|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	MIR193B|ENST00000384907|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	./.	0	0	0	0	15	11	15	11	0	0	./.	3	6	3	8	22	23	22	24	3	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2783996989	16	17002745	CGT	C	329	PASS	-	-	-	-	-	Del	-	D	17002745	17002763	2	16	321.009	-	-	8	1	-	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	4	3	30	23	30	23	4	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784002873	16	32465364	AC	A	380	PASS	-	-	-	-	-	Del	-	D	32465364	32465368	1	13	646.835	-	-	3	1	1	-	-	./.	0	0	0	0	10	33	10	33	0	0	./.	12	0	15	0	81	51	81	51	15	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784010300	16	63138466	A	AT	1920	PASS	-	-	-	-	-	Ins	-	I	63138466	63138470	1	289	1705.63	-	-	3	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	16	16	18	24	39	42	39	44	18	24	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784024281	17	13498930	TCG	T	658	PASS	HS3ST3A1	CCDS11165.1	r.?	-	-	Del	intronic	D	13498930	13498934	2	49	646.169	-	-	1	1	1	HS3ST3A1|CCDS11165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HS3ST3A1|CCDS11165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	6	6	6	8	17	18	17	18	6	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784030954	17	33216078	AC	A	540	PASS	-	-	-	-	-	Del	-	D	33216078	33216080	1	28	479.208	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	6	3	10	6	31	15	31	15	10	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784031067	17	33581225	TTGTC	T	358	PASS	SLFN5	CCDS32619.1	r.?	-	-	Del	intronic	D	33581225	33581235	4	20	376.932	-	-	2	1	1	SLFN5|CCDS32619.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLFN5|CCDS32619.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	3	5	3	20	30	20	30	5	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784040217	17	56528819	A	AT	420	PASS	HSF5	CCDS32690.1	r.?	-	-	Ins	intronic	I	56528819	56528828	1	20	368.503	-	-	8	1	1	HSF5|CCDS32690.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HSF5|CCDS32690.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	20	13	20	0	0	./.	4	3	5	5	31	24	33	24	5	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784041054	17	58751722	TC	T	300	PASS	BCAS3	ENST00000360207	r.?	-	-	Del	upstream	D	58751722	58751725	1	12	267.431	-	-	2	1	1	BCAS3|ENST00000360207|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	BCAS3|ENST00000360207|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	10	5	10	0	0	./.	3	2	4	3	30	32	30	32	4	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784046617	17	72513440	TG	T	300	PASS	CD300LB	CCDS11700.1	r.?	-	-	Del	downstream	D	72513440	72513444	1	10	269.237	-	-	3	1	1	CD300LB|CCDS11700.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CD300LB|CCDS11700.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	9	8	9	0	0	./.	4	1	6	1	23	23	23	23	6	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784046735	17	72772579	AG	A	478	PASS	TMEM104	CCDS32723.1	r.?	-	-	Del	upstream	D	72772579	72772582	1	30	474.994	-	-	2	1	1	TMEM104|CCDS32723.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TMEM104|CCDS32723.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	12	10	12	0	0	./.	4	5	4	6	13	15	13	15	4	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784057615	18	22832257	AG	A	420	PASS	ZNF521	CCDS32806.1	r.?	-	-	Del	intronic	D	22832257	22832263	1	20	377.484	-	-	5	1	1	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF521|CCDS32806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	10	26	10	0	0	./.	3	4	6	8	31	28	31	28	6	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784061322	18	35102482	GCA	G	389	PASS	CELF4	CCDS32818.1	r.?	-	-	Del	intronic	D	35102482	35102500	2	14	361.229	-	-	8	1	1	CELF4|CCDS32818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CELF4|CCDS32818.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	6	1	7	2	34	31	34	31	7	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784065459	18	48202161	A	AT	386	PASS	MAPK4	CCDS42437.1	r.?	-	-	Ins	intronic	I	48202161	48202169	1	18	373.872	-	-	7	1	1	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	2	7	12	31	43	31	45	7	12	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784071194	18	64676621	G	GAGAGAT	261	PASS	-	-	-	-	-	Ins	-	I	64676621	64676628	6	30	449.988	-	-	1	1	1	-	-	./.	0	0	0	0	6	17	6	18	0	0	./.	5	4	6	3	20	22	21	23	6	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784072951	18	69246835	TAGCTATCTGAGAGGTTAGTCAAAATAAATAATTC	T	319	PASS	-	-	-	-	-	Del	-	D	69246835	69246871	34	42	594.136	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	6	4	4	24	16	25	18	5	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784093367	19	44329122	G	GA	269	PASS	ZNF230	CCDS46097.1	r.?	-	-	Ins	upstream	I	44329122	44329132	1	12	265.358	-	-	9	1	1	ZNF230|CCDS46097.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	AC011508.1|ENST00000499389|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	2	3	41	32	41	33	2	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784105305	2	16862896	A	AT	321	PASS	-	-	-	-	-	Ins	-	I	16862896	16862899	1	14	367.672	-	-	2	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	1	5	2	34	18	35	18	6	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784110949	2	35369458	CA	C	300	PASS	-	-	-	-	-	Del	-	D	35369458	35369463	1	10	267.783	-	-	4	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	1	5	1	20	15	20	15	5	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784113261	2	42462860	G	GT	300	PASS	EML4	CCDS1807.1	r.?	-	-	Ins	intronic	I	42462860	42462868	1	6	264.773	-	-	7	1	1	EML4|CCDS1807.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EML4|CCDS1807.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	10	23	10	0	0	./.	5	0	7	0	21	30	21	31	7	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784113737	2	43873376	G	GT	420	PASS	PLEKHH2	CCDS1812.1	r.?	-	-	Ins	intronic	I	43873376	43873378	1	20	370.682	-	-	1	1	1	PLEKHH2|CCDS1812.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHH2|CCDS1812.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	3	4	4	4	22	19	23	19	4	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784114750	2	47177692	ACCT	A	389	PASS	TTC7A	CCDS33193.1	r.?	-	-	Del	intronic	D	47177692	47177700	3	18	374.896	-	-	2	1	1	TTC7A|CCDS33193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC7A|CCDS33193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	5	2	6	2	25	20	25	20	6	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784116245	2	51855145	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	51855145	51855151	1	30	476.591	-	-	5	1	1	-	-	./.	0	0	0	0	10	24	10	24	0	0	./.	5	4	5	8	28	27	28	27	5	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784120684	2	66950579	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	66950579	66950587	1	28	474.785	-	-	7	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	6	3	11	2	30	26	30	26	11	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784126965	2	87943196	GC	G	276	PASS	-	-	-	-	-	Del	-	D	87943196	87943200	1	13	642.077	-	-	3	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	12	0	14	0	31	11	31	11	14	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784132121	2	107491126	AT	A	420	PASS	ST6GAL2	CCDS2073.1	r.?	-	-	Del	intronic	D	107491126	107491134	1	20	374.896	-	-	7	1	1	ST6GAL2|CCDS2073.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ST6GAL2|CCDS2073.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	4	3	5	3	34	20	34	20	5	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784143643	2	144938013	T	TA	540	PASS	GTDC1	CCDS33300.1	r.?	-	-	Ins	intronic	I	144938013	144938022	1	28	476.591	-	-	8	1	1	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GTDC1|CCDS33300.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	17	0	0	./.	6	3	6	5	24	22	24	23	6	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784144343	2	147742531	TC	T	720	PASS	-	-	-	-	-	Del	-	D	147742531	147742535	1	49	638.465	-	-	3	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	6	6	7	8	24	30	24	30	7	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784149143	2	164323387	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	164323387	164323406	2	6	263.569	-	-	9	1	-	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	0	5	1	4	23	28	23	28	1	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784149619	2	166164922	AT	A	600	PASS	SCN2A	CCDS33314.1	r.?	-	-	Del	intronic	D	166164922	166164924	1	36	535.566	-	-	1	1	1	SCN2A|CCDS33314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN2A|CCDS33314.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	20	10	20	0	0	./.	5	5	5	8	30	24	30	24	5	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784159049	2	196419169	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	196419169	196419177	1	10	263.569	-	-	7	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	1	5	2	18	20	18	20	5	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784167672	2	223116173	ATTACTATG	ATAG	259	PASS	PAX3	CCDS42826.1	r.?	-	-	Complex	intronic	DI	223116174	223116181	8	20	0	-	-	0	1	1	PAX3|CCDS42826.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	PAX3|CCDS42826.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	19	13	19	0	0	./.	3	4	0	0	17	19	20	23	3	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784169762	2	229439624	AT	A	276	PASS	-	-	-	-	-	Del	-	D	229439624	229439629	1	12	267.783	-	-	4	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	2	3	2	5	18	26	18	26	2	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784176483	20	7717488	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	7717488	7717498	1	42	578.877	-	-	9	1	1	-	-	./.	0	0	0	0	28	15	29	15	0	0	./.	6	5	8	7	27	23	27	23	8	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784180674	20	21784817	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	21784817	21784836	2	6	269.639	-	-	9	1	-	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	0	5	1	5	34	29	34	29	1	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784184588	20	32080730	A	AT	298	PASS	CBFA2T2	CCDS13221.1	r.?	-	-	Ins	intronic	I	32080730	32080740	1	16	320.075	-	-	9	1	1	CBFA2T2|CCDS13221.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CBFA2T2|CCDS13221.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	3	3	11	10	41	34	41	35	11	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784187604	20	41135434	CCTTGAGATTCTGAGTCTTGTACTTTT	C	464	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	41135434	41135462	26	77	864.772	-	-	1	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	10	21	10	0	0	./.	10	6	9	5	40	22	41	23	10	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784190194	20	48296213	C	CA	269	PASS	B4GALT5	CCDS13420.1	r.?	-	-	Ins	intronic	I	48296213	48296222	1	10	263.016	-	-	8	1	1	B4GALT5|CCDS13420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	B4GALT5|CCDS13420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	4	1	4	2	28	38	28	39	4	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784191661	20	51743557	T	TA	300	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Ins	intronic	I	51743557	51743567	1	12	263.016	-	-	9	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	2	3	5	5	33	25	33	25	5	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784192713	20	54082402	TA	T	300	PASS	-	-	-	-	-	Del	-	D	54082402	54082409	1	12	269.639	-	-	6	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	9	6	30	30	30	30	9	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784192741	20	54150104	CATTTAA	C	319	PASS	-	-	-	-	-	Del	-	D	54150104	54150116	6	40	593.327	-	-	1	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	7	4	7	6	24	20	24	20	7	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784194171	20	58210455	A	AT	360	PASS	PHACTR3	CCDS13480.1	r.?	-	-	Ins	intronic	I	58210455	58210463	1	16	320.677	-	-	7	1	1	PHACTR3|CCDS13480.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHACTR3|CCDS13480.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	17	23	18	0	0	./.	3	3	7	6	26	28	26	28	7	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784201417	21	20760675	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	20760675	20760683	1	48	745.77	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	11	3	16	6	40	17	40	17	16	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784211312	21	47072790	C	CT	898	PASS	PCBP3	CCDS42974.2	r.?	-	-	Ins	intronic	I	47072790	47072798	1	65	857.813	-	-	7	1	1	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PCBP3|CCDS42974.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	4	12	5	17	18	38	19	39	5	17	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784230531	3	24334399	G	GA	480	PASS	THRB	CCDS2641.1	r.?	-	-	Ins	intronic	I	24334399	24334408	1	21	424.401	-	-	8	1	1	THRB|CCDS2641.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	THRB|CCDS2641.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	2	6	5	7	18	27	18	27	5	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784238873	3	53490163	CAAGA	C	447	PASS	-	-	-	-	-	Del	-	D	53490163	53490173	4	28	482.87	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	6	3	7	29	17	29	17	3	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784249314	3	83895100	AT	A	540	PASS	-	-	-	-	-	Del	-	D	83895100	83895104	1	24	482.87	-	-	3	1	1	-	-	./.	0	0	0	0	24	1	24	1	0	0	./.	7	2	10	2	27	4	27	4	10	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784257112	3	111609508	A	AT	267	PASS	PHLDB2	CCDS46886.1	r.?	-	-	Ins	intronic	I	111609508	111609517	1	15	317.699	-	-	8	1	1	PHLDB2|CCDS46886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHLDB2|CCDS46886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	14	0	0	./.	2	4	3	4	19	25	19	25	3	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784260590	3	122632536	CG	C	360	PASS	SEMA5B	CCDS35491.1	r.2520-9delc	c.2133-9delc	p.?	Del	splice region	D	122632536	122632542	1	16	320.107	-	-	5	1	1	SEMA5B|CCDS35491.1|r.2520-9delc|c.2133-9delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	SEMA5B|CCDS35491.1|r.2520-9delc|c.2133-9delc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	6	3	22	13	22	13	6	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784262464	3	129286005	CA	C	360	PASS	PLXND1	CCDS33854.1	r.?	-	-	Del	intronic	D	129286005	129286007	1	16	321.913	-	-	1	1	1	PLXND1|CCDS33854.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXND1|CCDS33854.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	21	17	21	0	0	./.	3	3	6	4	23	24	23	24	6	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784285118	4	5230251	A	AT	629	PASS	STK32B	CCDS3380.1	r.?	-	-	Ins	intronic	I	5230251	5230259	1	30	582.591	-	-	7	1	1	STK32B|CCDS3380.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STK32B|CCDS3380.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	9	2	14	5	38	29	38	29	14	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784290219	4	20830489	CT	C	960	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	20830489	20830491	1	77	857.914	-	-	1	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	13	20	13	0	0	./.	10	6	11	8	31	32	31	32	11	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784292640	4	27873719	ACG	A	300	PASS	-	-	-	-	-	Del	-	D	27873719	27873723	2	12	267.496	-	-	1	1	-	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	3	2	3	2	21	32	21	32	3	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784300986	4	53652128	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	53652128	53652148	2	16	313.289	-	-	9	1	-	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	3	3	3	4	30	21	30	21	3	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784320635	4	115092931	CT	C	720	PASS	-	-	-	-	-	Del	-	D	115092931	115092934	1	48	641.027	-	-	2	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	7	5	7	6	24	31	24	31	7	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784339919	4	173254672	A	AT	420	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Ins	intronic	I	173254672	173254675	1	20	371.123	-	-	2	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	4	3	7	6	39	36	39	36	7	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784356857	5	25456682	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	25456682	25456691	1	50	686.773	-	-	8	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	9	4	11	7	36	32	36	33	11	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784360061	5	33617232	GGA	G	660	PASS	ADAMTS12	ENST00000504830	r.?	-	-	Del	intronic	D	33617232	33617235	2	36	589.684	-	-	1	1	1	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS12|ENST00000504830|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	8	3	9	4	21	22	21	22	9	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784366477	5	56160679	T	TA	420	PASS	MAP3K1	CCDS43318.1	r.953_954insa	c.953_954insA	p.L319fs*7	Ins	frameshift	I	56160679	56160681	1	18	371.422	-	-	1	1	1	MAP3K1|CCDS43318.1|r.953_954insa|c.953_954insA|p.L319fs*7|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	MAP3K1|CCDS43318.1|r.953_954insa|c.953_954insA|p.L319fs*7|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	10	12	10	12	0	0	./.	5	2	5	4	18	24	18	24	5	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784367644	5	59736167	C	CA	540	PASS	PDE4D	CCDS47032.1	r.?	-	-	Ins	intronic	I	59736167	59736176	1	24	477.542	-	-	8	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	30	18	30	0	0	./.	7	2	9	6	42	35	42	35	9	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784368008	5	61161416	TA	T	540	PASS	-	-	-	-	-	Del	-	D	61161416	61161421	1	30	482.961	-	-	4	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	4	5	5	5	29	21	29	21	5	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784380857	5	103285159	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	103285159	103285160	1	10	261.689	-	-	0	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	1	4	3	5	32	36	32	36	3	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784384486	5	114319499	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	114319499	114319507	1	12	265.301	-	-	7	1	1	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	2	3	4	6	23	22	23	22	4	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784396360	5	154709609	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	154709609	154709618	1	16	318.362	-	-	8	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	3	3	4	3	34	23	34	24	4	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784398398	5	161018332	T	TA	637	PASS	-	-	-	-	-	Ins	-	I	161018332	161018340	1	42	583.061	-	-	7	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	6	5	7	5	38	23	38	24	7	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784414755	6	26123729	G	GT	300	PASS	HIST1H2BC	CCDS4584.1	r.425_426insa	c.?	p.?	Ins	3'UTR variant	I	26123729	26123732	1	12	265.479	-	-	2	1	1	HIST1H2BC|CCDS4584.1|r.425_426insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	HIST1H2BC|CCDS4584.1|r.425_426insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	2	7	24	23	24	23	2	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784419128	6	35827164	C	CA	449	PASS	SRPK1	CCDS47415.1	r.?	-	-	Ins	intronic	I	35827164	35827172	1	25	424.766	-	-	7	1	1	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRPK1|CCDS47415.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	4	4	8	30	32	30	33	4	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784423348	6	49254196	CTCA	C	449	PASS	-	-	-	-	-	Del	-	D	49254196	49254205	3	25	429.583	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	4	4	4	22	17	22	17	4	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784431071	6	73464126	TAA	T	540	PASS	KCNQ5	CCDS4976.1	r.?	-	-	Del	intronic	D	73464126	73464130	2	30	483.281	-	-	3	1	1	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ5|CCDS4976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	5	4	6	5	35	29	35	29	6	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784435780	6	88781392	AAT	A	360	PASS	SPACA1	CCDS5014.1	r.?	-	-	Del	downstream	D	88781392	88781409	2	16	322.187	-	-	8	1	1	SPACA1|CCDS5014.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SPACA1|CCDS5014.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	20	14	20	14	0	0	./.	3	3	3	3	35	25	35	25	3	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784450462	6	138954336	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	138954336	138954343	1	42	584.054	-	-	6	1	1	-	-	./.	0	0	0	0	16	15	17	15	0	0	./.	6	5	7	7	29	24	29	24	7	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784450914	6	139877373	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	139877373	139877379	1	16	318.575	-	-	5	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	3	3	3	4	16	25	16	25	3	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784451652	6	143170280	CAA	C	360	PASS	HIVEP2	CCDS43510.1	r.?	-	-	Del	intronic	D	143170280	143170284	2	16	322.187	-	-	3	1	1	HIVEP2|CCDS43510.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HIVEP2|CCDS43510.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	3	4	4	25	17	25	17	4	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784469296	7	24700162	AAC	A	300	PASS	MPP6	CCDS5388.1	r.?	-	-	Del	intronic	D	24700162	24700181	2	10	268.29	-	-	9	1	1	MPP6|CCDS5388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MPP6|CCDS5388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	1	5	1	25	28	25	28	5	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784473983	7	38969203	T	TG	300	PASS	VPS41	ENST00000418457	r.?	-	-	Ins	upstream	I	38969203	38969204	1	12	256.248	-	-	0	1	1	VPS41|ENST00000418457|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	VPS41|ENST00000457055|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	3	2	3	3	31	23	31	23	3	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784476363	7	46065726	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	46065726	46065732	1	21	424.447	-	-	5	1	1	-	-	./.	0	0	0	0	11	22	12	22	0	0	./.	2	6	2	7	21	33	21	33	2	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784477295	7	49138007	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	49138007	49138017	1	12	318.335	-	-	9	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	5	1	7	5	30	33	31	33	7	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784490851	7	86348444	G	GA	660	PASS	GRM3	CCDS5600.1	r.?	-	-	Ins	intronic	I	86348444	86348453	1	42	582.41	-	-	8	1	1	GRM3|CCDS5600.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GRM3|CCDS5600.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	21	25	21	0	0	./.	6	5	7	7	38	40	39	41	7	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784498797	7	110817089	G	GA	720	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Ins	intronic	I	110817089	110817098	1	40	636.068	-	-	8	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	9	5	9	25	32	25	33	5	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784513822	7	154582290	TA	T	540	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154582290	154582296	1	10	482.921	-	-	5	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	0	9	2	11	11	33	11	33	2	11	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784515204	7	158060988	CG	C	300	PASS	PTPRN2	CCDS5949.1	r.?	-	-	Del	intronic	D	158060988	158060993	1	10	261.667	-	-	4	1	1	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRN2|CCDS5949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	1	4	1	0	23	24	23	24	2	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784519579	8	12475651	A	AT	414	PASS	AC130352.2	ENST00000500162	r.?	-	-	Ins	intronic	I	12475651	12475658	1	18	371.628	-	-	6	1	1	AC130352.2|ENST00000500162|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC130352.2|ENST00000500162|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	24	27	25	0	0	./.	2	5	7	8	18	28	19	28	7	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784527085	8	35093676	TC	T	569	PASS	UNC5D	CCDS6093.2	r.?	-	-	Del	intronic	D	35093676	35093681	1	35	536.918	-	-	4	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	6	4	7	7	91	170	91	170	7	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784527456	8	35630333	TA	T	420	PASS	UNC5D	CCDS6093.2	r.?	-	-	Del	intronic	D	35630333	35630335	1	8	369.22	-	-	1	1	1	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UNC5D|CCDS6093.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	7	0	22	0	154	131	154	131	22	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784527637	8	35933111	AT	A	540	PASS	-	-	-	-	-	Del	-	D	35933111	35933115	1	28	483.227	-	-	3	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	6	3	10	5	142	116	142	116	10	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784527798	8	36189056	CTG	C	480	PASS	-	-	-	-	-	Del	-	D	36189056	36189073	2	24	429.535	-	-	8	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	5	3	8	127	132	127	132	3	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784528363	8	37170953	GCA	G	269	PASS	-	-	-	-	-	Del	-	D	37170953	37170971	2	12	268.459	-	-	8	1	-	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	2	3	3	8	108	106	108	106	3	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784528614	8	37528246	AG	A	300	PASS	-	-	-	-	-	Del	-	D	37528246	37528248	1	6	268.459	-	-	1	1	1	-	-	./.	0	0	0	0	11	17	11	18	0	0	./.	5	0	15	0	198	224	198	224	15	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784530440	8	40763616	CTGGAAGGCAGTGCCAGCCCCTCCGCAAATCTTAGGAAACAGGAAGACCCTCTCCTCCTGTTGGAATGCTGTCAAAGAGTGTTCCTGCAGGCGAGGCTTCCATGTCCCCTGGAGATACCCTCTCATCTTTCTTCCCTTCCTTATACTTCCTACTTTCCTTTTCAATTTCCCACATTAGACCCTCATGACAGATATTCCTAAAGGTAACTTCTTTCTCTTACAAATCAGTCTATGCTGAT	C	377	PASS	-	-	-	-	-	Del	-	D	40763616	40763856	238	50	689.565	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	9	4	0	0	17	15	26	19	9	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784531735	8	47089649	AG	A	300	PASS	-	-	-	-	-	Del	-	D	47089649	47089652	1	12	266.051	-	-	2	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	5	5	33	31	33	31	5	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784536520	8	62074564	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	62074564	62074566	1	16	318.539	-	-	1	1	1	-	-	./.	0	0	0	0	23	13	23	13	0	0	./.	3	3	5	4	30	34	30	35	5	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784536970	8	63483629	T	TC	259	PASS	-	-	-	-	-	Ins	-	I	63483629	63483630	1	8	371.628	-	-	0	1	1	-	-	./.	0	0	0	0	22	25	22	25	0	0	./.	0	7	0	1	36	42	36	50	0	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784542584	8	80356016	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	80356016	80356031	2	10	268.459	-	-	7	1	1	-	-	./.	0	0	0	0	23	8	23	8	0	0	./.	4	1	6	1	38	36	38	36	6	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784543266	8	82446337	TAC	T	329	PASS	FABP12	CCDS47882.1	r.?	-	-	Del	upstream	D	82446337	82446346	2	16	322.151	-	-	4	1	-	FABP12|CCDS47882.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FABP12|CCDS47882.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	4	3	42	23	42	23	4	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784547553	8	95628219	G	GTAGA	592	PASS	-	-	-	-	-	Ins	-	I	95628219	95628226	4	64	717.97	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	7	7	8	8	32	40	32	40	8	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784550325	8	103458508	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	103458508	103458509	1	30	477.808	-	-	0	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	5	4	7	9	28	24	28	25	7	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784553262	8	112482534	TG	T	300	PASS	-	-	-	-	-	Del	-	D	112482534	112482536	1	6	257.622	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	5	0	6	0	39	29	39	29	6	0	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784557329	8	124827421	G	GT	300	PASS	FAM91A1	CCDS6346.2	r.5240_5241insu	c.?	p.?	Ins	3'UTR variant	I	124827421	124827431	1	10	265.449	-	-	9	1	1	FAM91A1|CCDS6346.2|r.5240_5241insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	FAM91A1|CCDS6346.2|r.5240_5241insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	19	18	20	18	0	0	./.	4	1	5	2	39	36	40	37	5	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784566895	9	7880843	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	7880843	7880850	1	16	319.754	-	-	6	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	3	8	6	30	23	30	24	8	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784573410	9	30423594	GA	G	509	PASS	-	-	-	-	-	Del	-	D	30423594	30423601	1	28	483.845	-	-	6	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	3	6	4	10	23	25	23	25	4	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784578480	9	68413289	TGCTTTCTTTT	TTTTTCTTGC	307	PASS	-	-	-	-	-	Complex	-	DI	68413290	68413299	10	36	0	-	-	0	1	1	-	-	./.	0	0	0	0	60	86	61	88	0	0	./.	8	3	0	0	119	145	119	147	8	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784578713	9	68425873	AAAAC	A	261	PASS	-	-	-	-	-	Del	-	D	68425873	68425883	4	10	482.641	-	-	2	1	1	-	-	./.	0	0	0	0	94	192	94	192	0	0	./.	0	9	0	11	106	246	106	246	0	11	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784581404	9	75451393	CT	C	480	PASS	TMC1	CCDS6643.1	r.?	-	-	Del	downstream	D	75451393	75451401	1	16	429.95	-	-	7	1	1	TMC1|CCDS6643.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	TMC1|CCDS6643.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	18	10	18	10	0	0	./.	7	1	10	3	24	14	24	14	10	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784581592	9	76226009	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	76226009	76226011	1	12	266.461	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	2	3	3	3	22	26	22	26	3	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784587894	9	98583941	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	98583941	98583947	1	10	266.461	-	-	5	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	4	1	6	2	19	19	19	19	6	2	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784597227	9	130777452	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	130777452	130777460	1	12	264.053	-	-	7	1	1	-	-	./.	0	0	0	0	16	22	16	23	0	0	./.	3	2	3	4	32	29	32	29	3	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784600664	X	3087689	TG	T	360	PASS	-	-	-	-	-	Del	-	D	3087689	3087691	1	16	322.709	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	3	4	5	22	17	22	17	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784601720	X	6041142	G	GA	300	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Ins	intronic	I	6041142	6041152	1	10	265.914	-	-	9	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	13	16	0	0	./.	4	1	4	1	25	25	25	25	4	1	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784605195	X	19258574	AACTG	A	418	PASS	-	-	-	-	-	Del	-	D	19258574	19258582	4	25	430.278	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	4	4	5	5	16	26	16	26	5	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784605203	X	19285429	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	19285429	19285437	1	24	424.86	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	5	4	14	27	44	27	45	4	14	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784605314	X	19808741	A	AT	420	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Ins	intronic	I	19808741	19808750	1	20	372.279	-	-	8	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	3	4	3	7	25	27	26	27	3	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784608060	X	30553057	T	TA	329	PASS	-	-	-	-	-	Ins	-	I	30553057	30553064	1	15	319.096	-	-	6	1	1	-	-	./.	0	0	0	0	19	26	19	27	0	0	./.	4	2	7	3	30	23	30	23	7	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784610620	X	41456804	CACTG	C	478	PASS	CASK	CCDS48095.1	r.?	-	-	Del	intronic	D	41456804	41456812	4	24	483.461	-	-	1	1	1	CASK|CCDS48095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CASK|CCDS48095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	2	7	3	8	16	27	16	27	3	8	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784611813	X	46154953	GT	G	720	PASS	-	-	-	-	-	Del	-	D	46154953	46154961	1	49	644.815	-	-	7	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	6	6	7	12	24	38	24	38	8	12	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784614085	X	55204172	CT	C	360	PASS	-	-	-	-	-	Del	-	D	55204172	55204177	1	16	322.709	-	-	4	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	3	8	5	31	23	31	23	8	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784617974	X	76169711	CT	C	387	PASS	-	-	-	-	-	Del	-	D	76169711	76169719	1	16	430.278	-	-	7	1	-	-	-	./.	0	0	0	0	21	6	21	6	0	0	./.	1	7	3	12	23	40	23	40	3	12	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784620114	X	84499740	A	AG	420	PASS	ZNF711	CCDS35344.1	r.?	-	-	Ins	intronic	I	84499740	84499750	1	20	368.065	-	-	9	1	1	ZNF711|CCDS35344.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF711|CCDS35344.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	4	10	6	29	16	29	17	10	6	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784620599	X	86271789	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	86271789	86271797	1	15	319.096	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	2	8	5	34	29	34	29	8	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784624837	X	102754191	TC	T	360	PASS	RAB40A	CCDS35357.1	r.?	-	-	Del	downstream	D	102754191	102754195	1	12	322.709	-	-	3	1	1	RAB40A|CCDS35357.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	RAB40A|CCDS35357.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	15	19	15	19	0	0	./.	1	5	1	7	17	22	17	22	1	7	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784625569	X	105900456	AACTTTTCTTCTCCAGCTTCCTC	A	261	PASS	CXorf57	CCDS14519.1	r.?	-	-	Del	intronic	D	105900456	105900483	22	30	483.461	-	-	1	1	1	CXorf57|CCDS14519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CXorf57|CCDS14519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	21	5	21	0	0	./.	4	5	2	4	30	32	32	33	4	5	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784625895	X	107795840	C	CA	600	PASS	COL4A5	CCDS35366.1	r.?	-	-	Ins	intronic	I	107795840	107795847	1	32	531.827	-	-	6	1	1	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL4A5|CCDS35366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	21	11	21	0	0	./.	3	7	5	10	27	35	27	35	5	10	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784626083	X	108686537	AT	A	420	PASS	GUCY2F	CCDS14545.1	r.?	-	-	Del	intronic	D	108686537	108686547	1	18	376.493	-	-	9	1	1	GUCY2F|CCDS14545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GUCY2F|CCDS14545.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	5	2	9	4	24	28	24	28	9	4	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784631867	X	131877952	G	GA	300	PASS	HS6ST2	CCDS48169.1	r.?	-	-	Ins	intronic	I	131877952	131877953	1	12	265.914	-	-	0	1	1	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HS6ST2|CCDS48169.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	6	9	30	30	30	31	6	9	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784634279	X	141502962	TA	T	660	PASS	-	-	-	-	-	Del	-	D	141502962	141502968	1	36	591.632	-	-	5	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	8	3	10	3	30	24	30	24	10	3	1	1	1	1	1	1	1	1
2825768	PD7239a	PD7239b	2784635257	X	145079144	AC	A	480	PASS	MIR891B	ENST00000401245	r.?	-	-	Del	downstream	D	145079144	145079148	1	24	426.064	-	-	3	1	1	MIR891B|ENST00000401245|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	MIR890|ENST00000401256|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	11	17	11	17	0	0	./.	5	3	7	5	25	23	25	23	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777725720	1	3421958	CG	C	329	PASS	MEGF6	CCDS41237.1	r.?	-	-	Del	intronic	D	3421958	3421960	1	16	305.31	-	-	1	1	1	MEGF6|CCDS41237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MEGF6|CCDS41237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	3	3	5	4	20	23	20	23	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777730102	1	15998123	TAG	T	600	PASS	DDI2	CCDS30607.1	r.?	-	-	Del	downstream	D	15998123	15998128	2	35	535.341	-	-	2	1	1	DDI2|CCDS30607.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DDI2|CCDS30607.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	25	21	25	21	0	0	./.	6	4	6	5	22	18	22	18	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777733710	1	24594320	CCATA	C	776	PASS	-	-	-	-	-	Del	-	D	24594320	24594325	4	66	802.711	-	-	1	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	5	10	6	14	13	27	13	27	6	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777738046	1	37967234	G	GC	1020	PASS	MEAF6	CCDS418.1	r.?	-	-	Ins	intronic	I	37967234	37967238	1	90	898.46	-	-	3	1	1	MEAF6|CCDS418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MEAF6|CCDS418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	22	15	23	0	0	./.	8	9	12	12	18	25	18	25	12	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777738849	1	39968995	AG	A	720	PASS	BMP8A	CCDS437.1	r.?	-	-	Del	intronic	D	39968995	39968997	1	40	643.132	-	-	1	1	1	BMP8A|CCDS437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMP8A|CCDS437.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	9	5	11	11	28	11	28	5	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777741122	1	46475978	G	GGAGA	269	PASS	MAST2	CCDS41326.1	r.?	-	-	Ins	intronic	I	46475978	46475983	4	12	254.124	-	-	2	1	1	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	20	17	20	0	0	./.	3	2	3	3	20	15	20	15	3	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777744565	1	58241223	GA	G	840	PASS	DAB1	CCDS607.1	r.?	-	-	Del	intronic	D	58241223	58241233	1	64	750.32	-	-	9	1	1	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DAB1|CCDS607.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	7	7	12	11	21	20	21	20	12	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777746358	1	64114003	GA	G	960	PASS	PGM1	CCDS625.1	r.?	-	-	Del	intronic	D	64114003	64114006	1	65	853.295	-	-	2	1	1	PGM1|CCDS625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PGM1|CCDS625.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	12	4	16	6	23	12	23	12	16	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777750609	1	78666150	AC	A	300	PASS	-	-	-	-	-	Del	-	D	78666150	78666158	1	10	267.972	-	-	7	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	1	4	1	5	21	16	21	16	1	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777754464	1	91724040	TTCC	TG	836	PASS	HFM1	CCDS30769.2	r.?	-	-	Complex	downstream	DI	91724041	91724043	3	77	0	-	-	0	1	1	HFM1|CCDS30769.2|r.?|-|-|protein_coding:indel:5KB_downstream_variant|SO:0000010:SO:1000032:SO:0001633	HFM1|CCDS30769.2|r.?|-|-|protein_coding:indel:5KB_downstream_variant|SO:0000010:SO:1000032:SO:0001633	./.	0	0	0	0	15	24	15	24	0	0	./.	10	6	0	0	21	17	21	17	10	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777757288	1	100879202	GC	G	720	PASS	CDC14A	CCDS769.1	r.?	-	-	Del	intronic	D	100879202	100879204	1	45	642.53	-	-	1	1	1	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	4	8	8	12	12	15	12	15	8	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777757700	1	102154344	CAGCCAT	C	464	PASS	-	-	-	-	-	Del	-	D	102154344	102154353	6	72	857.509	-	-	1	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	5	11	7	12	15	18	15	18	7	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777757719	1	102218682	GTATTAATATTTTAAAGGAAGTATCTC	G	551	PASS	-	-	-	-	-	Del	-	D	102218682	102218710	26	108	1018.29	-	-	1	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	8	11	5	6	15	12	18	17	8	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777761304	1	113459550	C	CA	298	PASS	SLC16A1	CCDS858.1	r.?	-	-	Ins	intronic	I	113459550	113459560	1	15	304.708	-	-	9	1	1	SLC16A1|CCDS858.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC16A1|CCDS858.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	35	26	35	0	0	./.	2	4	3	4	18	30	18	30	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777763351	1	120573483	CT	C	420	PASS	NOTCH2	CCDS908.1	r.?	-	-	Del	intronic	D	120573483	120573486	1	72	803.915	-	-	2	1	1	NOTCH2|CCDS908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOTCH2|CCDS908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	68	80	68	80	0	0	./.	7	8	9	11	71	108	71	108	9	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777764659	1	142801520	TC	T	348	PASS	-	-	-	-	-	Del	-	D	142801520	142801522	1	56	695.522	-	-	1	1	1	-	-	./.	0	0	0	0	143	107	143	107	0	0	./.	7	6	10	6	151	172	151	172	10	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777766525	1	145117771	TTA	T	540	PASS	-	-	-	-	-	Del	-	D	145117771	145117778	2	30	482.349	-	-	3	1	1	-	-	./.	0	0	0	0	82	91	82	91	0	0	./.	5	4	5	10	163	183	163	183	5	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777767897	1	148521477	TA	T	434	PASS	-	-	-	-	-	Del	-	D	148521477	148521484	1	56	696.124	-	-	6	1	1	-	-	./.	0	0	0	0	36	46	36	46	0	0	./.	6	7	6	8	85	61	85	61	7	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777768829	1	149923074	TTAGTAGAGATGGGG	T	290	PASS	OTUD7B	CCDS41389.1	r.?	-	-	Del	intronic	D	149923074	149923090	14	32	532.933	-	-	1	1	1	OTUD7B|CCDS41389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTUD7B|CCDS41389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	7	3	7	4	42	37	42	37	7	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777773882	1	157451695	TA	T	300	PASS	-	-	-	-	-	Del	-	D	157451695	157451705	1	12	267.972	-	-	9	1	1	-	-	./.	0	0	0	0	14	26	14	26	0	0	./.	3	2	3	2	35	44	35	44	3	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777776053	1	162098857	G	GT	300	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Ins	intronic	I	162098857	162098867	1	10	263.155	-	-	9	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	27	27	27	0	0	./.	1	4	1	7	52	70	52	72	1	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777777680	1	165610981	AG	A	840	PASS	MGST3	CCDS1249.1	r.?	-	-	Del	intronic	D	165610981	165610984	1	63	750.32	-	-	2	1	1	MGST3|CCDS1249.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MGST3|CCDS1249.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	22	29	22	0	0	./.	6	8	6	10	53	44	53	44	6	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777779680	1	169644469	CG	C	300	PASS	-	-	-	-	-	Del	-	D	169644469	169644471	1	12	266.767	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	2	3	3	4	53	58	53	58	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777781446	1	173247399	TGCTTGGTATAGA	T	406	PASS	AL022310.2	ENST00000421168	r.?	-	-	Del	intronic	D	173247399	173247413	12	48	749.116	-	-	1	1	1	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL022310.2|ENST00000421168|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	22	13	22	0	0	./.	3	11	3	12	34	63	34	63	3	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777781720	1	173786298	AT	A	276	PASS	CENPL	CCDS44277.1	r.?	-	-	Del	intronic	D	173786298	173786300	1	12	267.972	-	-	1	1	1	CENPL|CCDS44277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CENPL|CCDS44277.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	26	14	26	0	0	./.	3	2	4	3	65	52	65	52	4	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777788723	1	187791170	TATTA	TA	749	PASS	-	-	-	-	-	Complex	-	DI	187791171	187791174	4	56	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	25	20	25	0	0	./.	6	7	0	0	39	46	39	46	6	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777790009	1	190426943	CT	C	956	PASS	FAM5C	CCDS1373.1	r.?	-	-	Del	intronic	D	190426943	190426945	1	100	962.29	-	-	1	1	1	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	36	23	36	23	0	0	./.	9	9	16	10	51	40	51	40	16	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777790158	1	190732008	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	190732008	190732018	1	10	264.961	-	-	9	1	1	-	-	./.	0	0	0	0	23	20	24	20	0	0	./.	4	1	4	1	47	44	47	44	4	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777790696	1	191949017	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	191949017	191949025	1	30	476.93	-	-	7	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	4	5	5	7	43	53	44	54	5	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777791943	1	194578890	TGA	T	1035	PASS	-	-	-	-	-	Del	-	D	194578890	194578893	2	91	959.881	-	-	1	1	1	-	-	./.	0	0	0	0	21	29	21	29	0	0	./.	6	12	7	13	48	67	48	67	7	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777791963	1	194650595	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	194650595	194650604	1	28	476.93	-	-	8	1	1	-	-	./.	0	0	0	0	22	17	22	19	0	0	./.	3	6	5	8	61	58	61	58	5	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777792360	1	195578416	CTT	C	441	PASS	-	-	-	-	-	Del	-	D	195578416	195578419	2	24	428.755	-	-	2	1	1	-	-	./.	0	0	0	0	11	22	11	22	0	0	./.	3	5	5	7	39	46	39	46	5	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777794984	1	200775930	T	TATCTATCTATGCCAA	296	PASS	CAMSAP1L1	CCDS1404.1	r.?	-	-	Ins	intronic	I	200775930	200775941	15	20	311.944	-	-	0	1	-	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	27	20	27	0	0	./.	4	3	0	0	54	50	55	50	4	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777796961	1	203924297	GTGACCTT	G	276	PASS	-	-	-	-	-	Del	-	D	203924297	203924306	7	36	535.943	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	5	6	5	25	34	25	34	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777798750	1	207477498	ATTGCTGTTATCCTGC	A	522	PASS	-	-	-	-	-	Del	-	D	207477498	207477515	15	96	964.096	-	-	1	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	11	7	11	7	57	53	57	53	11	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777798937	1	207997306	TTC	T	360	PASS	C1orf132	ENST00000367039	r.?	-	-	Del	intronic	D	207997306	207997322	2	15	318.556	-	-	7	1	1	C1orf132|ENST00000367039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf132|ENST00000367039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	26	16	26	0	0	./.	2	4	3	4	50	59	50	59	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777798951	1	208033678	TATAATAA	T	464	PASS	C1orf132	ENST00000367039	r.?	-	-	Del	intronic	D	208033678	208033687	7	65	843.662	-	-	1	1	1	C1orf132|ENST00000367039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf132|ENST00000367039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	12	26	12	0	0	./.	12	4	16	4	68	33	68	33	16	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777799026	1	208243524	CCTTTCTTCCCAT	C	551	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208243524	208243539	12	108	1014.08	-	-	1	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	8	11	8	10	47	58	48	59	9	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777800365	1	210986235	GT	G	960	PASS	KCNH1	CCDS31015.1	r.?	-	-	Del	intronic	D	210986235	210986237	1	80	857.509	-	-	1	1	1	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH1|CCDS31015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	23	16	23	0	0	./.	9	7	11	13	47	55	47	55	11	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777803079	1	215832996	G	GT	960	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	215832996	215833004	1	81	847.876	-	-	7	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	25	23	25	0	0	./.	8	8	12	11	62	52	63	53	12	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777803564	1	216918769	GC	G	600	PASS	ESRRG	CCDS1517.1	r.?	-	-	Del	intronic	D	216918769	216918771	1	36	535.943	-	-	1	1	1	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ESRRG|CCDS1517.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	33	25	33	0	0	./.	5	5	7	7	59	43	59	43	7	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777806474	1	222815433	CTAATG	C	656	PASS	MIA3	CCDS41470.1	r.?	-	-	Del	intronic	D	222815433	222815441	5	56	696.124	-	-	1	1	1	MIA3|CCDS41470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIA3|CCDS41470.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	7	6	9	7	58	41	58	41	9	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777810890	1	231103373	CTATG	C	420	PASS	TTC13	CCDS1588.1	r.?	-	-	Del	intronic	D	231103373	231103385	4	20	375.16	-	-	2	1	1	TTC13|CCDS1588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC13|CCDS1588.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	25	20	25	0	0	./.	3	4	3	4	42	59	42	59	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777812085	1	233529568	AT	A	1020	PASS	-	-	-	-	-	Del	-	D	233529568	233529573	1	88	911.104	-	-	4	1	1	-	-	./.	0	0	0	0	12	26	12	26	0	0	./.	7	10	9	12	54	59	54	59	9	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777812501	1	234400629	AC	A	780	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	intronic	D	234400629	234400633	1	56	696.726	-	-	3	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	22	24	22	0	0	./.	6	7	11	11	63	48	63	48	11	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777812805	1	235004628	CAG	C	660	PASS	-	-	-	-	-	Del	-	D	235004628	235004633	2	42	589.537	-	-	2	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	6	5	8	5	38	42	38	42	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777814341	1	237067649	TG	T	1349	PASS	MTR	CCDS1614.1	r.?	-	-	Del	downstream	D	237067649	237067653	1	156	1231.47	-	-	3	1	1	MTR|CCDS1614.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	MTR|CCDS1614.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	15	17	15	17	0	0	./.	11	12	13	13	46	63	46	63	13	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777814794	1	237790988	TTTCAAGCCTGGTACAAATAGAAA	T	319	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237790988	237791013	23	40	589.537	-	-	1	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	7	4	7	3	55	35	55	36	7	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777815630	1	239549492	TG	T	997	PASS	-	-	-	-	-	Del	-	D	239549492	239549494	1	88	909.899	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	10	7	12	7	47	28	47	28	12	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777815867	1	240050852	TTCAGAAACTTGATTTGTTGGAA	T	667	PASS	CHRM3	CCDS1616.1	r.?	-	-	Del	intronic	D	240050852	240050876	22	150	1232.67	-	-	1	1	1	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	9	14	6	13	41	59	44	60	9	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777816417	1	240831034	CTT	C	449	PASS	-	-	-	-	-	Del	-	D	240831034	240831039	2	25	428.152	-	-	4	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	4	4	6	5	45	66	45	66	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777817671	1	242709096	C	CG	300	PASS	-	-	-	-	-	Ins	-	I	242709096	242709100	1	6	248.104	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	0	5	1	0	24	44	25	44	1	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777817824	1	242989271	CATG	C	509	PASS	-	-	-	-	-	Del	-	D	242989271	242989277	3	28	482.349	-	-	1	1	1	-	-	./.	0	0	0	0	18	26	18	26	0	0	./.	6	3	7	3	47	53	47	53	7	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777818253	1	243902661	AT	A	900	PASS	AKT3	CCDS31077.1	r.?	-	-	Del	intronic	D	243902661	243902663	1	70	803.915	-	-	1	1	1	AKT3|CCDS31077.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKT3|CCDS31077.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	9	6	10	7	52	47	52	47	10	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777818674	1	244674747	C	CA	300	PASS	C1orf101	CCDS44340.1	r.?	-	-	Ins	intronic	I	244674747	244674750	1	12	264.961	-	-	2	1	1	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf101|CCDS44340.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	15	19	16	0	0	./.	3	2	3	5	50	36	51	37	3	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777819677	1	246107213	AC	A	1200	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	246107213	246107215	1	121	1070.68	-	-	1	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	22	31	22	0	0	./.	10	10	18	13	64	55	64	55	18	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777822201	10	1925029	G	GTT	1080	PASS	-	-	-	-	-	Ins	-	I	1925029	1925032	2	99	947.538	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	10	8	11	9	25	22	25	22	11	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777823742	10	5510029	ACTGACTGATTTCAGCT	A	319	PASS	-	-	-	-	-	Del	-	D	5510029	5510049	16	42	573.632	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	5	6	4	6	22	25	23	25	5	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777830285	10	19742087	AC	A	840	PASS	C10orf112	ENST00000377266	r.?	-	-	Del	intronic	D	19742087	19742090	1	60	753.832	-	-	2	1	1	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf112|ENST00000377266|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	5	9	8	12	24	23	24	23	8	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777835720	10	32453429	CTTG	C	660	PASS	-	-	-	-	-	Del	-	D	32453429	32453435	3	36	589.888	-	-	1	1	-	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	3	8	3	9	19	31	19	31	3	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777836163	10	33364151	CT	C	1080	PASS	-	-	-	-	-	Del	-	D	33364151	33364153	1	100	969.212	-	-	1	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	9	9	14	13	35	31	35	31	14	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777842274	10	50930443	TGGG	T	358	PASS	-	-	-	-	-	Del	-	D	50930443	50930448	3	20	376.916	-	-	4	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	4	3	6	3	38	31	38	31	6	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777842903	10	53325390	TATCCAATGTGCAAACTAATTGTAGCC	T	551	PASS	PRKG1	CCDS7244.1	r.?	-	-	Del	intronic	D	53325390	53325419	26	110	1023.06	-	-	1	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	21	12	21	0	0	./.	9	10	8	8	21	19	22	21	9	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777844147	10	57009281	TGGGTAA	T	377	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	57009281	57009290	6	54	699.986	-	-	1	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	23	26	23	0	0	./.	5	8	7	14	13	21	13	21	7	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777846788	10	64725041	A	AACC	867	PASS	-	-	-	-	-	Ins	-	I	64725041	64725045	3	81	832.623	-	-	1	1	1	-	-	./.	0	0	0	0	23	22	23	24	0	0	./.	8	8	10	9	20	26	20	26	10	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777847839	10	67197010	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	67197010	67197018	1	12	319.458	-	-	7	1	1	-	-	./.	0	0	0	0	27	17	28	17	0	0	./.	1	5	2	6	20	28	20	28	2	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777847895	10	67358139	TCTTCTA	T	551	PASS	-	-	-	-	-	Del	-	D	67358139	67358147	6	108	1023.06	-	-	1	1	1	-	-	./.	0	0	0	0	27	15	27	15	0	0	./.	11	8	12	10	28	19	28	19	12	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777852621	10	80272603	CCAGGACCAAGGCATATCCTGGGACTTGG	C	435	PASS	-	-	-	-	-	Del	-	D	80272603	80272632	28	66	804.666	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	10	5	9	3	16	6	17	8	10	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777853660	10	84207085	AGTTCCAGCACTTTGGGAGCTGAGGCAGGAGGATCTCTTGAGTCCAGGAGTTTCAGACC	A	783	PASS	NRG3	CCDS31233.1	r.?	-	-	Del	intronic	D	84207085	84207144	58	198	1440.57	-	-	1	1	1	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG3|CCDS31233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	22	22	22	0	0	./.	10	17	0	0	7	4	17	21	10	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777855156	10	89653805	AT	A	900	PASS	PTEN	ENST00000371953	r.1461delU	c.104delT	p.M35fs*19	Del	frameshift	D	89653805	89653807	1	66	807.677	-	-	1	1	1	PTEN|ENST00000371953|r.1461delU|c.104delT|p.M35fs*19|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PTEN|ENST00000371953|r.1461delU|c.104delT|p.M35fs*19|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	28	21	28	21	0	0	./.	5	10	12	17	23	23	23	23	12	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777867265	10	126380635	CCATTT	C	676	PASS	FAM53B	CCDS7641.1	r.?	-	-	Del	intronic	D	126380635	126380643	5	45	644.335	-	-	1	1	1	FAM53B|CCDS7641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM53B|CCDS7641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	8	4	7	4	44	49	45	49	8	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777868791	10	128950795	C	CTA	600	PASS	DOCK1	ENST00000398025	r.?	-	-	Ins	intronic	I	128950795	128950798	2	35	526.41	-	-	1	1	1	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK1|ENST00000398025|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	24	13	24	0	0	./.	6	4	7	5	38	34	38	35	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777869008	10	129344133	TC	T	360	PASS	NPS	CCDS41577.1	r.?	-	-	Del	upstream	D	129344133	129344135	1	16	323.071	-	-	1	1	1	NPS|CCDS41577.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NPS|CCDS41577.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	26	14	26	0	0	./.	3	3	5	4	35	56	35	56	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777869546	10	130742867	TAC	T	420	PASS	-	-	-	-	-	Del	-	D	130742867	130742883	2	18	376.314	-	-	7	1	-	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	5	2	6	2	63	43	63	43	6	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777869659	10	130992515	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	130992515	130992534	2	12	269.226	-	-	9	1	-	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	3	2	4	5	50	56	50	56	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777870702	10	133807325	GAAAAAC	G	307	PASS	-	-	-	-	-	Del	-	D	133807325	133807335	6	40	592.296	-	-	1	1	1	-	-	./.	0	0	0	0	29	29	29	29	0	0	./.	4	7	5	9	41	70	42	70	6	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777871650	11	561227	CCCGCGGCGGGGA	C	348	PASS	RASSF7	CCDS7702.1	r.177_188delCCGCGGCGGGGA	c.?	p.?	Del	5'UTR variant	D	561227	561243	12	49	632.563	-	-	1	1	1	RASSF7|CCDS7702.1|r.177_188delCCGCGGCGGGGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	RASSF7|CCDS7702.1|r.177_188delCCGCGGCGGGGA|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	8	37	8	37	0	0	./.	6	6	0	0	17	29	17	29	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777873420	11	5242184	ATCT	A	406	PASS	HBB	CCDS7753.1	r.?	-	-	Del	downstream	D	5242184	5242191	3	32	539.177	-	-	2	1	1	HBB|CCDS7753.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HBB|CCDS7753.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	25	14	25	0	0	./.	7	3	8	3	31	26	31	26	8	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777877791	11	16235361	TTAA	T	447	PASS	SOX6	CCDS7821.1	r.?	-	-	Del	intronic	D	16235361	16235367	3	30	485.259	-	-	1	1	1	SOX6|CCDS7821.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOX6|CCDS7821.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	26	27	26	0	0	./.	5	4	8	6	30	28	30	28	8	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777877914	11	16683055	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	16683055	16683064	1	15	319.894	-	-	8	1	1	-	-	./.	0	0	0	0	17	26	17	26	0	0	./.	4	2	5	5	22	25	22	25	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777880260	11	22751242	TAAGGTAGATTTTATTCACATCTACCTTATTACTAGATGTGAATAAAATCTACCTTATTACTA	T	261	PASS	GAS2	CCDS7858.1	r.?	-	-	Del	intronic	D	22751242	22751318	62	30	485.259	-	-	1	1	1	GAS2|CCDS7858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAS2|CCDS7858.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	28	12	28	0	0	./.	4	5	0	0	14	27	18	32	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777881003	11	24307737	TAG	T	817	PASS	-	-	-	-	-	Del	-	D	24307737	24307742	2	60	754.847	-	-	2	1	1	-	-	./.	0	0	0	0	24	18	24	18	0	0	./.	9	5	13	5	27	18	27	18	13	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777882942	11	29063748	TA	T	540	PASS	-	-	-	-	-	Del	-	D	29063748	29063750	1	28	485.259	-	-	1	1	1	-	-	./.	0	0	0	0	18	28	18	28	0	0	./.	6	3	7	3	21	25	21	25	7	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777886178	11	38336200	AC	A	389	PASS	-	-	-	-	-	Del	-	D	38336200	38336202	1	20	375.015	-	-	1	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	4	3	5	4	16	26	16	27	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777886292	11	38566730	CAAACAACCCTGTT	C	319	PASS	-	-	-	-	-	Del	-	D	38566730	38566746	13	36	592.492	-	-	1	1	-	-	-	./.	0	0	0	0	25	17	25	17	0	0	./.	8	3	8	4	28	19	28	19	8	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777893713	11	61432502	AG	A	600	PASS	-	-	-	-	-	Del	-	D	61432502	61432505	1	27	531.952	-	-	2	1	1	-	-	./.	0	0	0	0	9	24	9	24	0	0	./.	2	8	4	8	17	24	17	24	4	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777893957	11	61965001	CTGTTCTTG	C	290	PASS	SCGB1D1	CCDS8015.1	r.?	-	-	Del	downstream	D	61965001	61965014	8	36	539.177	-	-	1	1	1	SCGB1D1|CCDS8015.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SCGB1D1|CCDS8015.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	22	15	22	15	0	0	./.	5	5	5	7	23	31	23	31	5	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777894645	11	63509925	CTGA	CCT	371	PASS	RTN3	CCDS8050.1	r.?	-	-	Complex	intronic	DI	63509926	63509928	3	18	0	-	-	0	1	1	RTN3|CCDS8050.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	RTN3|CCDS8050.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	5	2	0	0	19	11	19	11	5	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777901673	11	81957922	TAATTAG	T	319	PASS	AP002802.1	ENST00000500502	r.?	-	-	Del	intronic	D	81957922	81957929	6	42	591.89	-	-	1	1	1	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP002802.1|ENST00000500502|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	6	5	6	6	21	18	21	18	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777903965	11	89095617	ATCTT	A	927	PASS	NOX4	CCDS8285.1	r.?	-	-	Del	intronic	D	89095617	89095622	4	84	908.172	-	-	1	1	1	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOX4|CCDS8285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	6	11	11	13	29	25	29	25	11	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777904631	11	91156764	CAA	C	1020	PASS	-	-	-	-	-	Del	-	D	91156764	91156767	2	78	915.998	-	-	2	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	12	5	13	8	28	15	28	15	13	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777905871	11	94953601	AGTTAG	A	807	PASS	SESN3	CCDS8303.1	r.?	-	-	Del	intronic	D	94953601	94953608	5	66	808.163	-	-	1	1	1	SESN3|CCDS8303.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SESN3|CCDS8303.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	20	26	20	0	0	./.	10	5	11	6	18	16	18	16	11	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777907795	11	99902968	A	AT	960	PASS	CNTN5	ENST00000279463	r.?	-	-	Ins	intronic	I	99902968	99902971	1	77	851.846	-	-	2	1	1	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTN5|ENST00000279463|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	6	10	6	14	19	23	20	24	6	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777913621	11	115797022	G	GA	1440	PASS	-	-	-	-	-	Ins	-	I	115797022	115797024	1	169	1277.17	-	-	1	1	1	-	-	./.	0	0	0	0	15	23	15	24	0	0	./.	12	12	17	13	23	23	23	23	17	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777918023	11	126280893	GTGGCGTT	G	493	PASS	ST3GAL4	CCDS8474.1	r.?	-	-	Del	intronic	D	126280893	126280901	7	60	912.988	-	-	1	1	1	ST3GAL4|CCDS8474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ST3GAL4|CCDS8474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	15	20	15	0	0	./.	14	3	15	5	35	25	35	25	15	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777920231	11	132524584	TG	T	300	PASS	ENSG00000183715	CCDS8492.1	r.?	-	-	Del	intronic	D	132524584	132524586	1	6	268.384	-	-	1	1	1	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183715|CCDS8492.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	0	5	7	12	26	38	26	38	7	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777925310	12	8749613	G	GCT	300	PASS	-	-	-	-	-	Ins	-	I	8749613	8749630	2	6	262.201	-	-	8	1	1	-	-	./.	0	0	0	0	11	25	11	25	0	0	./.	0	5	0	6	13	43	13	43	0	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777927140	12	12381707	AC	A	780	PASS	LRP6	CCDS8647.1	r.?	-	-	Del	intronic	D	12381707	12381712	1	54	699.302	-	-	4	1	1	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	11	19	11	0	0	./.	5	8	7	11	31	31	31	31	7	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777927141	12	12382560	A	ATGAAGTTGCTTAATTCAACTAGTT	261	PASS	LRP6	CCDS8647.1	r.?	-	-	Ins	intronic	I	12382560	12382585	24	30	354.921	-	-	1	1	1	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRP6|CCDS8647.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	27	23	27	0	0	./.	4	5	1	1	25	23	28	28	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777927240	12	12518872	TAGCGTGGTGGGTA	T	493	PASS	LOH12CR1	CCDS8649.1	r.?	-	-	Del	intronic	D	12518872	12518886	13	78	910.026	-	-	1	1	1	LOH12CR1|CCDS8649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LOH12CR1|CCDS8649.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	12	5	12	7	33	19	33	19	12	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777928103	12	14350402	TA	T	540	PASS	-	-	-	-	-	Del	-	D	14350402	14350405	1	28	484.364	-	-	2	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	3	6	5	13	19	34	19	34	5	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777935309	12	31101242	GC	G	1200	PASS	TSPAN11	CCDS31765.1	r.?	-	-	Del	intronic	D	31101242	31101247	1	117	1076.5	-	-	4	1	1	TSPAN11|CCDS31765.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TSPAN11|CCDS31765.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	8	12	11	14	25	30	25	30	11	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777939632	12	43309168	TAGACCCTG	T	435	PASS	-	-	-	-	-	Del	-	D	43309168	43309177	8	66	806.47	-	-	1	1	1	-	-	./.	0	0	0	0	29	16	29	16	0	0	./.	5	10	6	11	27	31	27	31	6	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777941922	12	49422479	GC	G	1289	PASS	MLL2	CCDS44873.1	r.?	-	-	Del	intronic	D	49422479	49422483	1	143	1182.46	-	-	3	1	1	MLL2|CCDS44873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLL2|CCDS44873.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	17	21	17	0	0	./.	10	12	14	17	30	38	30	38	14	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777945170	12	55806434	CTGTT	C	632	PASS	PHC1B	ENST00000326184	r.2263_2266delAACA	c.2083_2086delAACA	p.N695fs*3	Del	frameshift	D	55806434	55806441	4	60	805.266	-	-	1	1	1	PHC1B|ENST00000326184|r.2263_2266delAACA|c.2083_2086delAACA|p.N695fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PHC1B|ENST00000326184|r.2263_2266delAACA|c.2083_2086delAACA|p.N695fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	23	18	23	18	0	0	./.	4	11	4	14	13	38	13	38	4	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777947873	12	62110250	CCAGATTTTTT	C	348	PASS	FAM19A2	CCDS8962.1	r.?	-	-	Del	intronic	D	62110250	62110261	10	49	646.621	-	-	1	1	1	FAM19A2|CCDS8962.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM19A2|CCDS8962.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	6	6	8	6	29	30	29	30	8	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777950249	12	67776539	C	CT	569	PASS	-	-	-	-	-	Ins	-	I	67776539	67776548	1	27	528.616	-	-	8	1	1	-	-	./.	0	0	0	0	22	36	22	36	0	0	./.	2	8	2	10	16	46	16	46	2	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777950290	12	67920469	TG	T	960	PASS	-	-	-	-	-	Del	-	D	67920469	67920471	1	81	861.56	-	-	1	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	8	8	8	10	31	27	31	27	8	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777950908	12	69437886	AT	A	300	PASS	-	-	-	-	-	Del	-	D	69437886	69437895	1	12	269.426	-	-	8	1	-	-	-	./.	0	0	0	0	24	28	24	28	0	0	./.	3	2	6	3	39	30	39	30	6	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777953381	12	75484733	C	CA	749	PASS	KCNC2	CCDS9005.1	r.?	-	-	Ins	intronic	I	75484733	75484736	1	50	692.68	-	-	2	1	1	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNC2|CCDS9005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	4	9	6	12	25	28	25	28	6	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777953630	12	76302754	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	76302754	76302756	1	63	745.963	-	-	1	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	8	9	12	27	30	27	31	9	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777958182	12	89944537	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	89944537	89944554	2	10	269.426	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	1	4	1	37	36	37	36	4	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777958523	12	90886491	TCAG	T	447	PASS	-	-	-	-	-	Del	-	D	90886491	90886495	3	28	484.966	-	-	1	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	6	3	9	6	23	34	23	34	9	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777961082	12	96250639	C	CA	960	PASS	SNRPF	CCDS9055.1	r.?	-	-	Ins	upstream	I	96250639	96250648	1	65	852.529	-	-	8	1	1	SNRPF|CCDS9055.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SNRPF|CCDS9055.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	17	31	17	31	0	0	./.	12	4	15	7	33	21	33	21	15	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777963624	12	102827089	G	GA	1020	PASS	IGF1	CCDS44961.1	r.?	-	-	Ins	intronic	I	102827089	102827097	1	88	905.21	-	-	7	1	1	IGF1|CCDS44961.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGF1|CCDS44961.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	7	10	10	14	27	35	27	35	10	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777968897	12	116892310	TAGCCTC	T	290	PASS	-	-	-	-	-	Del	-	D	116892310	116892317	6	35	538.851	-	-	1	1	1	-	-	./.	0	0	0	0	25	9	25	9	0	0	./.	6	4	7	5	23	29	23	29	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777972237	12	123465806	AT	A	660	PASS	ARL6IP4	CCDS31923.1	r.545delU	c.490delT	p.S164fs*81	Del	frameshift	D	123465806	123465808	1	42	592.134	-	-	1	1	1	ARL6IP4|CCDS31923.1|r.545delU|c.490delT|p.S164fs*81|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ARL6IP4|CCDS31923.1|r.545delU|c.490delT|p.S164fs*81|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	24	17	24	0	0	./.	5	6	9	7	44	33	44	33	9	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777972562	12	124025649	CT	C	480	PASS	-	-	-	-	-	Del	-	D	124025649	124025651	1	16	431.081	-	-	1	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	7	1	10	3	37	20	37	20	10	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777972768	12	124523398	AT	A	360	PASS	-	-	-	-	-	Del	-	D	124523398	124523408	1	12	323.311	-	-	9	1	1	-	-	./.	0	0	0	0	24	13	24	13	0	0	./.	1	5	3	6	24	21	24	21	3	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777974092	12	127769025	CT	C	840	PASS	-	-	-	-	-	Del	-	D	127769025	127769027	1	63	754.391	-	-	1	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	6	8	7	9	38	27	38	27	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777974591	12	128824532	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	128824532	128824539	1	14	372.981	-	-	6	1	1	-	-	./.	0	0	0	0	25	25	25	25	0	0	./.	6	1	11	2	38	23	38	23	11	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777983189	13	36269932	AC	A	1320	PASS	-	-	-	-	-	Del	-	D	36269932	36269934	1	128	1189.86	-	-	1	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	7	15	7	17	15	23	15	23	7	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777983922	13	38446846	TA	T	840	PASS	TRPC4	CCDS45037.1	r.?	-	-	Del	upstream	D	38446846	38446850	1	60	757.568	-	-	3	1	1	TRPC4|CCDS45037.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TRPC4|CCDS45037.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	22	17	22	0	0	./.	9	5	14	6	21	7	21	7	14	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777985166	13	42043220	ACCCAAT	A	377	PASS	C13orf15	CCDS41880.1	r.?	-	-	Del	intronic	D	42043220	42043228	6	50	702.854	-	-	1	1	1	C13orf15|CCDS41880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C13orf15|CCDS41880.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	27	16	27	0	0	./.	4	9	5	11	11	20	12	20	6	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777986123	13	45081416	AGAGGTAAGAATAAC	A	435	PASS	TSC22D1	CCDS31966.1	r.?	-	-	Del	intronic	D	45081416	45081432	14	72	811.078	-	-	1	1	1	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSC22D1|CCDS31966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	21	23	21	0	0	./.	7	8	7	9	14	19	14	19	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777990813	13	60292876	ACTGTCATTTGTTAAATCCTTTTG	A	464	PASS	DIAPH3	CCDS41898.1	r.?	-	-	Del	intronic	D	60292876	60292900	23	80	863.383	-	-	1	1	1	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIAPH3|CCDS41898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	17	23	17	0	0	./.	7	9	5	9	15	13	17	13	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777991899	13	63719050	TA	T	720	PASS	-	-	-	-	-	Del	-	D	63719050	63719054	1	49	649.344	-	-	3	1	1	-	-	./.	0	0	0	0	19	31	19	31	0	0	./.	6	6	10	8	24	17	24	17	10	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2777992696	13	66674791	T	TA	960	PASS	-	-	-	-	-	Ins	-	I	66674791	66674793	1	72	853.75	-	-	1	1	1	-	-	./.	0	0	0	0	23	24	24	24	0	0	./.	5	11	6	12	18	31	18	31	6	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778007639	13	111972896	TC	T	1049	PASS	C13orf16	CCDS9522.1	r.?	-	-	Del	upstream	D	111972896	111972899	1	99	972.811	-	-	2	1	1	C13orf16|CCDS9522.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C13orf16|CCDS9522.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	17	17	17	0	0	./.	10	8	15	10	21	19	21	19	15	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778007932	13	113157683	G	GTTGTTGTT	493	PASS	TUBGCP3	CCDS9525.1	r.?	-	-	Ins	intronic	I	113157683	113157703	8	90	834.411	-	-	2	1	-	TUBGCP3|CCDS9525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TUBGCP3|CCDS9525.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	27	28	27	0	0	./.	8	9	6	7	31	27	32	28	8	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778015951	14	35723588	C	CTTGT	329	PASS	KIAA0391	CCDS32063.1	r.?	-	-	Ins	intronic	I	35723588	35723615	4	16	309.888	-	-	6	1	-	KIAA0391|CCDS32063.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA0391|CCDS32063.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	35	20	35	0	0	./.	3	3	3	4	46	42	46	42	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778017063	14	38080884	AG	A	600	PASS	-	-	-	-	-	Del	-	D	38080884	38080890	1	27	538.756	-	-	5	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	8	2	11	5	33	44	33	44	11	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778017986	14	40184686	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	40184686	40184696	1	12	267.271	-	-	9	1	1	-	-	./.	0	0	0	0	18	31	18	31	0	0	./.	2	3	3	3	42	37	42	38	3	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778018448	14	41370330	G	GAA	989	PASS	-	-	-	-	-	Ins	-	I	41370330	41370339	2	88	897.281	-	-	8	1	1	-	-	./.	0	0	0	0	20	24	21	24	0	0	./.	10	7	14	15	42	49	42	49	14	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778018998	14	42526552	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	42526552	42526560	1	25	427.633	-	-	7	1	1	-	-	./.	0	0	0	0	29	21	29	21	0	0	./.	4	4	6	8	32	42	32	42	6	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778019771	14	44406256	C	CA	1589	PASS	-	-	-	-	-	Ins	-	I	44406256	44406259	1	210	1437.84	-	-	2	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	14	13	16	19	33	34	33	34	16	19	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778019838	14	44580431	T	TTC	298	PASS	-	-	-	-	-	Ins	-	I	44580431	44580432	2	12	296.04	-	-	0	1	-	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	1	5	1	0	41	19	42	19	2	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778020843	14	47526158	AATTTTT	A	261	PASS	MDGA2	CCDS41948.1	r.?	-	-	Del	intronic	D	47526158	47526165	6	30	486.506	-	-	1	1	1	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS41948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	24	30	24	0	0	./.	5	4	7	4	30	17	30	17	7	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778021770	14	49994110	TA	T	1560	PASS	-	-	-	-	-	Del	-	D	49994110	49994112	1	187	1405.46	-	-	1	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	16	10	21	13	29	22	29	22	21	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778025517	14	57194064	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	57194064	57194066	1	6	243.188	-	-	1	1	-	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	0	5	1	4	100	62	100	62	1	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778029572	14	67571735	ATAGGTTTT	A	667	PASS	GPHN	CCDS9777.1	r.?	-	-	Del	intronic	D	67571735	67571745	8	156	1243.29	-	-	1	1	1	GPHN|CCDS9777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPHN|CCDS9777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	31	22	31	0	0	./.	11	12	13	13	23	25	24	25	14	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778034769	14	80388095	GTTCTTGTTCTTCTTCTTCTTCTTC	G	278	PASS	-	-	-	-	-	Del	-	D	80388095	80388125	24	16	324.337	-	-	1	1	-	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	3	3	0	0	14	26	14	26	3	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778037443	14	88214553	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	88214553	88214560	1	10	266.669	-	-	6	1	1	-	-	./.	0	0	0	0	25	17	25	18	0	0	./.	4	1	4	2	27	19	27	19	4	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778042097	14	100850859	ATGG	A	1043	PASS	WDR25	CCDS32157.1	r.?	-	-	Del	intronic	D	100850859	100850865	3	120	1125.55	-	-	1	1	1	WDR25|CCDS32157.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR25|CCDS32157.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	14	7	17	10	24	19	24	19	17	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778042259	14	101460870	AT	A	1200	PASS	SNORD114-31	ENST00000363219	r.?	-	-	Del	downstream	D	101460870	101460873	1	120	1080.52	-	-	2	1	1	SNORD114-31|ENST00000363219|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	SNORD114-31|ENST00000363219|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	17	15	17	15	0	0	./.	9	11	12	15	26	28	26	28	12	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778047350	15	23851287	GTGAGC	G	416	PASS	-	-	-	-	-	Del	-	D	23851287	23851293	5	30	481.069	-	-	1	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	4	5	4	6	17	22	17	22	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778049843	15	29855547	C	CT	629	PASS	FAM189A1	CCDS45198.1	r.?	-	-	Ins	intronic	I	29855547	29855556	1	36	577.136	-	-	8	1	1	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM189A1|CCDS45198.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	25	23	25	0	0	./.	3	8	7	12	31	36	33	36	7	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778050040	15	30213045	TTAAAACAC	T	580	PASS	-	-	-	-	-	Del	-	D	30213045	30213055	8	121	1079.88	-	-	1	1	1	-	-	./.	0	0	0	0	13	26	13	26	0	0	./.	10	10	10	11	30	30	30	30	10	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778050721	15	32169934	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	32169934	32169943	1	56	694.878	-	-	8	1	1	-	-	./.	0	0	0	0	28	23	28	23	0	0	./.	6	7	10	10	41	34	42	34	10	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778051209	15	33446736	GCCAGGCT	G	365	PASS	FMN1	ENST00000414268	r.373_379delAGCCUGG	c.373_379delAGCCTGG	p.S125fs*64	Del	frameshift	D	33446736	33446745	7	54	701.5	-	-	1	1	1	FMN1|ENST00000414268|r.373_379delAGCCUGG|c.373_379delAGCCTGG|p.S125fs*64|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	FMN1|ENST00000414268|r.373_379delAGCCUGG|c.373_379delAGCCTGG|p.S125fs*64|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	21	19	21	19	0	0	./.	5	8	6	9	26	22	26	22	6	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778056193	15	44149147	TATAGAAATG	T	580	PASS	WDR76	CCDS10106.1	r.1266_1274delAUAGAAAUG	c.1196_1204delATAGAAATG	p.Y399_E402delins*	Del	nonsense	D	44149147	44149158	9	105	1078.07	-	-	1	1	1	WDR76|CCDS10106.1|r.1266_1274delAUAGAAAUG|c.1196_1204delATAGAAATG|p.Y399_E402delins*|protein_coding:CDS:exon:deletion:inframe_variant:stop_gained:indel|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001587:SO:1000032	WDR76|CCDS10106.1|r.1266_1274delAUAGAAAUG|c.1196_1204delATAGAAATG|p.Y399_E402delins*|protein_coding:CDS:exon:deletion:inframe_variant:stop_gained:indel|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001587:SO:1000032	./.	0	0	0	0	21	15	21	15	0	0	./.	14	6	14	6	38	23	38	23	14	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778057979	15	48557673	C	CT	540	PASS	SLC12A1	CCDS10129.2	r.?	-	-	Ins	intronic	I	48557673	48557682	1	30	481.069	-	-	8	1	1	SLC12A1|CCDS10129.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC12A1|CCDS10129.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	19	20	19	0	0	./.	5	4	8	5	41	25	41	25	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778058513	15	50042492	GATACCTGGTCCACCACAAAGATTCTGCTATAGTAGTACAAAGTGAGACCTAGGAATTATAAAACATTTCTGATGCCAAGCCAGGGTCAGGAGCCTTAGACATAA	G	493	PASS	-	-	-	-	-	Del	-	D	50042492	50042598	104	90	917.717	-	-	1	1	1	-	-	./.	0	0	0	0	12	23	12	23	0	0	./.	8	9	0	0	13	24	21	33	8	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778058781	15	50641182	ACTATAAAATACC	A	290	PASS	GABPB1	CCDS32239.1	r.?	-	-	Del	intronic	D	50641182	50641195	12	35	540.542	-	-	1	1	1	GABPB1|CCDS32239.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABPB1|CCDS32239.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	4	6	4	6	29	40	29	40	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778061628	15	56613134	TATGC	T	985	PASS	-	-	-	-	-	Del	-	D	56613134	56613142	4	110	1026.43	-	-	1	1	1	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	9	10	12	10	31	37	31	37	12	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778063363	15	60122411	CCT	C	840	PASS	-	-	-	-	-	Del	-	D	60122411	60122417	2	60	756.759	-	-	2	1	1	-	-	./.	0	0	0	0	21	13	21	13	0	0	./.	9	5	11	7	35	23	35	23	11	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778064571	15	62928214	TG	T	780	PASS	AC100839.1	ENST00000508975	r.?	-	-	Del	downstream	D	62928214	62928219	1	56	701.5	-	-	4	1	1	AC100839.1|ENST00000508975|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC100839.1|ENST00000508975|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	19	16	19	16	0	0	./.	6	7	7	10	22	30	22	30	7	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778067502	15	68321496	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	68321496	68321506	1	15	319.509	-	-	9	1	1	-	-	./.	0	0	0	0	26	36	26	37	0	0	./.	4	2	8	5	32	34	34	35	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778068033	15	69427890	AT	A	1020	PASS	-	-	-	-	-	Del	-	D	69427890	69427895	1	78	918.922	-	-	4	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	12	5	13	9	33	24	33	24	13	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778068883	15	71782364	A	AT	294	PASS	THSD4	CCDS10238.2	r.?	-	-	Ins	intronic	I	71782364	71782374	1	12	266.057	-	-	9	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	23	27	23	0	0	./.	3	2	3	2	32	31	32	31	3	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778075398	15	87187284	AT	A	960	PASS	AGBL1	ENST00000421325	r.?	-	-	Del	intronic	D	87187284	87187288	1	80	864.867	-	-	3	1	1	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL1|ENST00000421325|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	24	16	24	0	0	./.	7	9	11	11	29	27	29	27	11	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778077152	15	91279504	C	CT	300	PASS	BLM	CCDS10363.1	r.?	-	-	Ins	intronic	I	91279504	91279514	1	12	266.659	-	-	9	1	1	BLM|CCDS10363.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BLM|CCDS10363.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	27	26	27	0	0	./.	3	2	4	2	40	44	41	45	4	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778079655	15	96916030	TTTG	T	569	PASS	-	-	-	-	-	Del	-	D	96916030	96916037	3	35	538.736	-	-	2	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	6	5	9	32	31	32	31	5	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778079773	15	97285155	TATCTG	T	958	PASS	-	-	-	-	-	Del	-	D	97285155	97285162	5	90	918.319	-	-	1	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	8	9	9	10	25	29	25	29	9	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778083392	16	2550423	GC	G	1229	PASS	TBC1D24	CCDS42107.1	r.1580delC	c.1440delC	p.H481fs*36	Del	frameshift	D	2550423	2550426	1	126	1086.79	-	-	2	1	1	TBC1D24|CCDS42107.1|r.1580delC|c.1440delC|p.H481fs*36|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TBC1D24|CCDS42107.1|r.1580delC|c.1440delC|p.H481fs*36|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	16	15	16	15	0	0	./.	8	13	15	15	33	30	33	30	15	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778085428	16	6265332	AG	A	420	PASS	-	-	-	-	-	Del	-	D	6265332	6265338	1	20	370.292	-	-	5	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	4	3	6	4	29	28	29	28	6	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778090704	16	15329991	G	GGT	311	PASS	-	-	-	-	-	Ins	-	I	15329991	15329992	2	11	516.69	-	-	0	1	-	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	0	10	0	2	10	27	10	27	0	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778092450	16	18928907	A	AT	300	PASS	SMG1	CCDS45430.1	r.?	-	-	Ins	intronic	I	18928907	18928917	1	6	267.075	-	-	9	1	1	SMG1|CCDS45430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMG1|CCDS45430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	21	0	0	./.	5	0	5	0	37	39	37	39	5	0	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778094916	16	23546288	GA	G	780	PASS	EARS2	CCDS42132.1	r.910delU	c.878delT	p.F293fs*38	Del	frameshift	D	23546288	23546293	1	56	698.007	-	-	4	1	1	EARS2|CCDS42132.1|r.910delU|c.878delT|p.F293fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	EARS2|CCDS42132.1|r.910delU|c.878delT|p.F293fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	14	10	14	10	0	0	./.	7	6	10	10	37	44	37	44	10	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778103537	16	48255312	GAGT	G	838	PASS	ABCC11	CCDS10732.1	r.?	-	-	Del	intronic	D	48255312	48255316	3	72	801.827	-	-	1	1	1	ABCC11|CCDS10732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC11|CCDS10732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	11	22	11	0	0	./.	7	8	11	10	91	70	91	70	11	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778104552	16	50066587	CAG	C	298	PASS	TMEM188	CCDS45480.1	r.?	-	-	Del	intronic	D	50066587	50066592	2	12	324.102	-	-	2	1	1	TMEM188|CCDS45480.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM188|CCDS45480.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	5	1	5	3	52	59	52	59	5	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778106043	16	52871586	TA	T	1860	PASS	ENSG00000227450	ENST00000430771	r.?	-	-	Del	intronic	D	52871586	52871588	1	260	1667.91	-	-	1	1	1	ENSG00000227450|ENST00000430771|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227450|ENST00000430771|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	28	31	28	0	0	./.	19	12	25	17	121	127	121	127	25	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778107059	16	54097389	TGTTACTGTTATTATGCA	T	870	PASS	FTO	CCDS32448.1	r.?	-	-	Del	intronic	D	54097389	54097408	17	252	1620.51	-	-	1	1	1	FTO|CCDS32448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FTO|CCDS32448.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	17	13	17	13	90	92	90	92	17	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778116054	16	79287258	CT	C	1080	PASS	-	-	-	-	-	Del	-	D	79287258	79287261	1	96	968.694	-	-	2	1	1	-	-	./.	0	0	0	0	21	25	21	25	0	0	./.	7	11	9	15	15	23	15	23	9	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778119096	16	88534186	CT	C	689	PASS	ZFPM1	CCDS32502.1	r.?	-	-	Del	intronic	D	88534186	88534190	1	24	645.796	-	-	3	1	1	ZFPM1|CCDS32502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFPM1|CCDS32502.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	1	11	5	16	10	25	10	25	5	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778119542	16	89785019	CAA	C	687	PASS	ZNF276	CCDS45554.1	r.?	-	-	Del	upstream	D	89785019	89785022	2	54	701.619	-	-	2	1	1	ZNF276|CCDS45554.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	C16orf7|CCDS42220.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	8	5	13	8	21	14	21	14	13	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778120315	17	1340082	ACCT	A	958	PASS	CRK	CCDS11002.1	r.747_749delAGG	c.606_608delAGG	p.G203delG	Del	inframe	D	1340082	1340088	3	78	914.005	-	-	1	1	1	CRK|CCDS11002.1|r.747_749delAGG|c.606_608delAGG|p.G203delG|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	CRK|CCDS45561.1|r.712_713+1delAGg|c.606_607+1delAGg|p.?|protein_coding:CDS:exon:extended_cis_splice_site:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:0000147:SO:CGPX06:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	12	18	12	18	0	0	./.	5	12	6	17	11	21	11	21	6	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778121089	17	3035079	CT	C	1109	PASS	OR1G1	CCDS11020.1	r.?	-	-	Del	upstream	D	3035079	3035084	1	108	1017.14	-	-	4	1	1	OR1G1|CCDS11020.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	OR1G1|CCDS11020.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	16	17	16	17	0	0	./.	11	8	14	11	22	16	22	16	14	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778125746	17	14284463	AT	A	360	PASS	-	-	-	-	-	Del	-	D	14284463	14284473	1	15	323.865	-	-	9	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	2	5	2	23	23	23	23	5	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778126280	17	16040837	AAAAGAAC	A	551	PASS	NCOR1	CCDS11175.1	r.?	-	-	Del	intronic	D	16040837	16040847	7	98	1024.97	-	-	1	1	1	NCOR1|CCDS11175.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCOR1|CCDS11175.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	13	6	16	7	26	11	26	11	16	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778131948	17	29480248	TTTA	T	1076	PASS	NF1	CCDS42292.1	r.?	-	-	Del	intronic	D	29480248	29480254	3	112	1079.55	-	-	1	1	1	NF1|CCDS42292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NF1|CCDS42292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	7	13	8	15	31	48	31	48	8	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778133328	17	31595533	AG	A	420	PASS	ACCN1	CCDS11276.1	r.?	-	-	Del	intronic	D	31595533	31595535	1	14	377.842	-	-	1	1	1	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS11276.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	1	6	6	13	44	50	44	50	6	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778133524	17	32139789	TAGACCTAGGACAGATTCCATTTCCTTAG	T	348	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	32139789	32139818	28	48	647.73	-	-	1	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	5	7	6	4	41	40	41	43	6	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778133848	17	33110515	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	33110515	33110525	1	18	370.618	-	-	9	1	-	-	-	./.	0	0	0	0	22	29	23	29	0	0	./.	5	2	10	10	45	62	46	63	10	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778134958	17	35339216	AATATATT	A	609	PASS	AATF	CCDS32632.1	r.?	-	-	Del	intronic	D	35339216	35339224	7	120	1132.32	-	-	1	1	1	AATF|CCDS32632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AATF|CCDS32632.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	14	7	16	7	46	30	46	30	16	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778135533	17	36178941	GT	G	600	PASS	-	-	-	-	-	Del	-	D	36178941	36178943	1	36	536.162	-	-	1	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	5	5	9	12	32	47	32	47	9	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778137623	17	39113401	G	GT	300	PASS	KRT39	CCDS11382.1	r.?	-	-	Ins	downstream	I	39113401	39113411	1	12	265.673	-	-	9	1	1	KRT39|CCDS11382.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KRT39|CCDS11382.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	27	24	27	24	0	0	./.	2	3	3	3	46	58	49	58	3	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778137887	17	39727804	AC	A	600	PASS	KRT9	CCDS32654.1	r.506delG	c.440delG	p.G147fs*3	Del	frameshift	D	39727804	39727807	1	32	538.571	-	-	2	1	-	KRT9|CCDS32654.1|r.506delG|c.440delG|p.G147fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	KRT9|CCDS32654.1|r.506delG|c.440delG|p.G147fs*3|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	16	11	16	11	0	0	./.	7	3	10	5	31	33	31	33	10	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778140881	17	43440563	CATG	C	1020	PASS	-	-	-	-	-	Del	-	D	43440563	43440569	3	70	915.209	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	4	13	6	15	51	87	51	87	6	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778145638	17	50504204	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	50504204	50504213	1	20	373.628	-	-	8	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	4	3	6	3	42	40	43	40	6	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778147819	17	55248461	AG	A	749	PASS	-	-	-	-	-	Del	-	D	55248461	55248464	1	56	688.462	-	-	2	1	1	-	-	./.	0	0	0	0	10	24	10	24	0	0	./.	6	7	8	9	27	48	27	48	8	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778150895	17	59974107	T	TA	840	PASS	INTS2	CCDS45750.1	r.?	-	-	Ins	intronic	I	59974107	59974117	1	64	745.45	-	-	9	1	1	INTS2|CCDS45750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INTS2|CCDS45750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	31	26	31	0	0	./.	7	7	11	12	48	49	49	50	11	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778153387	17	64107115	TAAAC	T	567	PASS	CCDC46	CCDS32710.1	r.?	-	-	Del	intronic	D	64107115	64107123	4	42	593.752	-	-	1	1	1	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC46|CCDS32710.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	29	22	29	0	0	./.	6	5	7	5	42	45	42	45	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778158753	17	73184897	ATGAATTGAAACTATCAGCTGGT	A	363	PASS	-	-	-	-	-	Del	-	D	73184897	73184922	22	54	701.707	-	-	1	1	-	-	-	./.	0	0	0	0	28	17	28	17	0	0	./.	8	5	7	5	50	28	51	28	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778160408	17	75304308	CTG	C	1109	PASS	SEPT9	CCDS45790.1	r.?	-	-	Del	intronic	D	75304308	75304313	2	110	1019.55	-	-	2	1	1	SEPT9|CCDS45790.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPT9|CCDS45790.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	9	10	13	12	43	43	43	43	13	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778160628	17	75693141	CAGCTTCCCCA	C	365	PASS	-	-	-	-	-	Del	-	D	75693141	75693152	10	54	701.707	-	-	1	1	1	-	-	./.	0	0	0	0	20	6	20	6	0	0	./.	5	8	7	9	48	37	48	37	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778161262	17	76672941	TGCC	T	1283	PASS	CYTH1	CCDS42392.2	r.?	-	-	Del	intronic	D	76672941	76672945	3	180	1349.44	-	-	1	1	1	CYTH1|CCDS42392.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTH1|CCDS42392.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	29	18	29	0	0	./.	11	14	13	24	47	70	47	70	13	24	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778162338	17	78647287	TCAAA	T	629	PASS	RPTOR	CCDS11773.1	r.?	-	-	Del	intronic	D	78647287	78647294	4	40	593.15	-	-	1	1	1	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RPTOR|CCDS11773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	23	20	23	0	0	./.	7	4	9	5	40	45	40	45	9	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778166016	18	4125537	GGAATAGTGGAGACTCAA	G	319	PASS	-	-	-	-	-	Del	-	D	4125537	4125557	17	22	594.766	-	-	1	1	1	-	-	./.	0	0	0	0	21	30	21	30	0	0	./.	1	10	1	10	24	35	24	35	1	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778167119	18	7422218	C	CA	418	PASS	-	-	-	-	-	Ins	-	I	7422218	7422225	1	21	428.179	-	-	6	1	1	-	-	./.	0	0	0	0	22	21	22	21	0	0	./.	6	2	7	2	26	11	26	11	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778170795	18	18822999	AGCAT	A	447	PASS	GREB1L	CCDS45836.1	r.?	-	-	Del	intronic	D	18822999	18823005	4	28	487.12	-	-	1	1	1	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	6	3	10	4	41	25	41	25	10	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778177182	18	37164784	GT	G	1320	PASS	AC105201.1	ENST00000510201	r.?	-	-	Del	intronic	D	37164784	37164788	1	119	1186.52	-	-	3	1	1	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC105201.1|ENST00000510201|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	27	20	27	0	0	./.	6	16	7	16	17	31	17	31	7	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778181989	18	51039637	AT	A	345	PASS	DCC	CCDS11952.1	r.?	-	-	Del	intronic	D	51039637	51039643	1	15	757.14	-	-	5	1	1	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCC|CCDS11952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	23	25	23	0	0	./.	14	0	14	0	40	21	41	21	15	0	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778183901	18	55945689	TA	T	840	PASS	NEDD4L	CCDS45872.1	r.?	-	-	Del	intronic	D	55945689	55945692	1	60	754.13	-	-	2	1	1	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEDD4L|CCDS45872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	25	17	25	0	0	./.	5	9	9	12	26	25	26	25	9	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778185837	18	60975092	CTTGTGGTTTCAT	C	261	PASS	BCL2	CCDS11981.1	r.?	-	-	Del	intronic	D	60975092	60975106	12	28	487.12	-	-	1	1	1	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL2|CCDS11981.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	29	23	29	0	0	./.	3	6	2	6	23	31	24	31	3	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778185923	18	61149329	CT	C	600	PASS	SERPINB5	CCDS32839.1	r.?	-	-	Del	intronic	D	61149329	61149335	1	27	541.244	-	-	5	1	1	SERPINB5|CCDS32839.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SERPINB5|CCDS32839.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	8	3	8	25	43	25	43	3	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778186746	18	63281674	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	63281674	63281682	1	10	267.612	-	-	7	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	4	1	7	2	26	12	26	12	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778189110	18	69186841	GAATA	G	269	PASS	-	-	-	-	-	Del	-	D	69186841	69186847	4	12	270.622	-	-	1	1	1	-	-	./.	0	0	0	0	16	32	16	32	0	0	./.	3	2	4	2	19	31	19	31	4	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778189695	18	70606489	ATG	A	1080	PASS	-	-	-	-	-	Del	-	D	70606489	70606493	2	99	973.637	-	-	1	1	1	-	-	./.	0	0	0	0	26	21	26	21	0	0	./.	8	10	9	14	28	32	28	32	9	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778191203	18	74656879	CAG	C	329	PASS	ZNF236	CCDS42447.1	r.?	-	-	Del	intronic	D	74656879	74656887	2	15	324.746	-	-	3	1	1	ZNF236|CCDS42447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF236|CCDS42447.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	4	2	5	4	33	23	33	23	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778197719	19	11560804	CGCCGCCA	C	290	PASS	ELAVL3	CCDS32912.1	r.?	-	-	Del	downstream	D	11560804	11560812	7	36	536.101	-	-	1	1	1	ELAVL3|CCDS32912.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRKCSH|CCDS32911.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	31	8	31	0	0	./.	5	5	6	6	13	13	13	13	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778201464	19	20182280	T	TA	360	PASS	ZNF90	ENST00000427401	r.?	-	-	Ins	intronic	I	20182280	20182289	1	15	321.299	-	-	8	1	1	ZNF90|ENST00000427401|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF90|ENST00000427401|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	2	4	2	5	26	22	26	22	2	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778207403	19	36857015	C	CA	269	PASS	ZFP14	CCDS33002.1	r.?	-	-	Ins	intronic	I	36857015	36857022	1	12	267.749	-	-	6	1	1	ZFP14|CCDS33002.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFP14|CCDS33002.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	6	4	33	28	33	28	6	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778207513	19	36992053	T	TTG	269	PASS	AC092296.3	ENST00000500282	r.?	-	-	Ins	intronic	I	36992053	36992055	2	6	243.667	-	-	0	1	-	AC092296.3|ENST00000500282|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC092296.3|ENST00000500282|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	5	0	0	1	21	26	21	26	5	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778209244	19	40376631	G	GA	434	PASS	FCGBP	CCDS12546.1	r.11798_11799insu	c.11790_11791insT	p.P3931fs*36	Ins	frameshift	I	40376631	40376633	1	42	587.243	-	-	1	1	1	FCGBP|CCDS12546.1|r.11798_11799insu|c.11790_11791insT|p.P3931fs*36|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	FCGBP|CCDS12546.1|r.11798_11799insu|c.11790_11791insT|p.P3931fs*36|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	33	25	36	26	0	0	./.	6	5	10	10	39	43	41	44	10	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778211511	19	45491915	GGT	G	300	PASS	CLPTM1	CCDS12651.1	r.?	-	-	Del	intronic	D	45491915	45491918	2	12	270.76	-	-	1	1	1	CLPTM1|CCDS12651.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLPTM1|CCDS12651.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	2	3	6	5	32	22	32	22	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778213997	19	49745019	CA	C	600	PASS	-	-	-	-	-	Del	-	D	49745019	49745028	1	32	541.519	-	-	8	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	7	3	10	10	24	24	24	24	10	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778221188	2	5984766	TTTTAAAGGGA	T	580	PASS	-	-	-	-	-	Del	-	D	5984766	5984779	10	120	1073.48	-	-	1	1	1	-	-	./.	0	0	0	0	24	28	24	28	0	0	./.	9	11	9	12	22	31	22	31	9	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778221863	2	7895308	CA	C	780	PASS	-	-	-	-	-	Del	-	D	7895308	7895311	1	44	697.161	-	-	2	1	1	-	-	./.	0	0	0	0	17	35	17	35	0	0	./.	3	10	12	14	38	33	38	33	12	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778229085	2	26006140	GTTCAATTTTTGTGTACTGTA	G	406	PASS	ASXL2	ENST00000435504	r.?	-	-	Del	intronic	D	26006140	26006163	20	64	751.437	-	-	1	1	1	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASXL2|ENST00000435504|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	22	26	22	0	0	./.	7	7	6	7	21	18	22	18	7	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778245407	2	68205484	GTCATTCCTTTGTCACTGCCTAAACATCTTCAACAAGGTACCCTTGTTATTAAGATAAAATCAGAAATTCTAATGGTGTACA	G	290	PASS	-	-	-	-	-	Del	-	D	68205484	68205566	81	32	536.741	-	-	1	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	7	3	0	0	15	15	25	19	7	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778256510	2	102854400	AG	A	360	PASS	IL1RL2	CCDS2056.1	r.?	-	-	Del	intronic	D	102854400	102854402	1	12	319.034	-	-	1	1	1	IL1RL2|CCDS2056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RL2|CCDS2056.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	5	1	7	1	21	18	21	18	7	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778262903	2	121874123	TC	T	1020	PASS	-	-	-	-	-	Del	-	D	121874123	121874125	1	84	912.46	-	-	1	1	1	-	-	./.	0	0	0	0	26	16	26	16	0	0	./.	6	11	8	14	22	28	22	28	8	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778263586	2	123988083	CTTGATTAGCT	C	290	PASS	-	-	-	-	-	Del	-	D	123988083	123988095	10	36	536.139	-	-	1	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	5	5	5	5	25	22	25	23	5	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778266042	2	130972068	TA	T	851	PASS	-	-	-	-	-	Del	-	D	130972068	130972071	1	150	1234.5	-	-	2	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	14	9	18	12	31	30	31	30	18	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778275095	2	156530626	C	CA	960	PASS	-	-	-	-	-	Ins	-	I	156530626	156530633	1	77	849.153	-	-	6	1	1	-	-	./.	0	0	0	0	24	21	24	21	0	0	./.	6	10	9	13	28	27	28	27	9	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778279208	2	168940203	AT	A	629	PASS	STK39	CCDS42770.1	r.?	-	-	Del	intronic	D	168940203	168940205	1	42	589.211	-	-	1	1	1	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	15	29	15	0	0	./.	6	5	8	6	26	25	26	25	8	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778281506	2	173818904	GT	G	780	PASS	RAPGEF4	CCDS42775.1	r.?	-	-	Del	intronic	D	173818904	173818908	1	54	697.161	-	-	3	1	1	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF4|CCDS42775.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	5	8	6	9	25	30	25	30	6	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778282770	2	177406434	A	AAAAC	267	PASS	-	-	-	-	-	Ins	-	I	177406434	177406466	4	12	307.595	-	-	7	1	-	-	-	./.	0	0	0	0	20	22	21	22	0	0	./.	5	1	7	2	23	37	23	37	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778282827	2	177592237	AC	A	540	PASS	-	-	-	-	-	Del	-	D	177592237	177592239	1	30	483.067	-	-	1	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	4	5	7	10	29	37	29	37	7	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778284626	2	183059484	CATTT	C	447	PASS	PDE1A	CCDS2285.1	r.?	-	-	Del	intronic	D	183059484	183059490	4	24	483.067	-	-	1	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	24	17	24	0	0	./.	7	2	8	3	26	26	26	26	8	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778285210	2	184620794	C	CA	1020	PASS	-	-	-	-	-	Ins	-	I	184620794	184620802	1	90	902.225	-	-	7	1	1	-	-	./.	0	0	0	0	28	17	28	17	0	0	./.	8	9	11	12	28	34	29	34	11	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778285666	2	186133577	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	186133577	186133584	1	10	262.35	-	-	6	1	1	-	-	./.	0	0	0	0	29	26	29	26	0	0	./.	1	4	3	8	14	29	14	30	3	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778285769	2	186459414	GA	G	1349	PASS	-	-	-	-	-	Del	-	D	186459414	186459416	1	156	1233.9	-	-	1	1	1	-	-	./.	0	0	0	0	30	30	30	30	0	0	./.	11	12	14	14	28	29	28	29	14	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778288408	2	194500042	TCAA	T	360	PASS	-	-	-	-	-	Del	-	D	194500042	194500048	3	16	322.045	-	-	1	1	1	-	-	./.	0	0	0	0	24	25	24	25	0	0	./.	3	3	5	4	24	22	24	22	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778288874	2	196004900	CTCTGATTG	C	290	PASS	-	-	-	-	-	Del	-	D	196004900	196004910	8	27	536.741	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	2	8	2	10	18	25	18	25	2	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778293285	2	206997491	ATATTCC	A	609	PASS	NDUFS1	CCDS2366.1	r.?	-	-	Del	intronic	D	206997491	206997499	6	130	1127.16	-	-	1	1	1	NDUFS1|CCDS2366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NDUFS1|CCDS2366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	21	13	21	0	0	./.	12	9	16	11	33	27	33	27	16	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778296152	2	215221200	AACAAAACAACTATGTATACAGTACTTGCAAAAAATTAATGTTTTCTAAAGCATTTTAAGTTTTTCTTTT	A	378	PASS	SPAG16	CCDS2396.1	r.?	-	-	Del	intronic	D	215221200	215221270	69	60	747.825	-	-	1	1	1	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPAG16|CCDS2396.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	9	5	0	0	12	9	21	14	9	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778299094	2	222967069	GGAGA	G	261	PASS	-	-	-	-	-	Del	-	D	222967069	222967078	4	30	483.067	-	-	4	1	1	-	-	./.	0	0	0	0	15	25	15	25	0	0	./.	5	4	8	7	19	16	19	16	8	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778300931	2	227895993	CT	C	689	PASS	COL4A4	CCDS42828.1	r.?	-	-	Del	intronic	D	227895993	227895995	1	48	641.681	-	-	1	1	1	COL4A4|CCDS42828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL4A4|CCDS42828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	13	27	13	0	0	./.	7	5	10	7	19	15	19	15	10	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778302364	2	231268627	ATTACCC	A	406	PASS	SP140L	CCDS46538.1	r.?	-	-	Del	downstream	D	231268627	231268636	6	63	750.835	-	-	1	1	1	SP140L|CCDS46538.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	SP140L|CCDS46538.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	10	18	10	18	0	0	./.	8	6	9	6	28	23	28	24	9	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778305033	2	237556519	CACCAG	C	1407	PASS	-	-	-	-	-	Del	-	D	237556519	237556527	5	170	1341.85	-	-	1	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	9	16	11	17	31	34	31	34	11	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778306225	2	240771991	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	240771991	240772000	1	24	423.372	-	-	8	1	1	-	-	./.	0	0	0	0	25	35	25	35	0	0	./.	5	3	5	4	37	36	37	36	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778308875	20	4914191	CT	C	960	PASS	SLC23A2	CCDS13085.1	r.?	-	-	Del	intronic	D	4914191	4914194	1	80	861.63	-	-	2	1	1	SLC23A2|CCDS13085.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC23A2|CCDS13085.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	9	7	13	11	24	19	24	19	13	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778311096	20	12289380	CA	C	720	PASS	-	-	-	-	-	Del	-	D	12289380	12289386	1	49	650.738	-	-	5	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	6	6	11	8	17	16	17	16	11	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778313252	20	19339898	TA	T	840	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19339898	19339908	1	63	759.194	-	-	9	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	6	8	13	11	31	32	31	32	13	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778314124	20	22149538	ATT	A	660	PASS	-	-	-	-	-	Del	-	D	22149538	22149542	2	42	596.51	-	-	3	1	1	-	-	./.	0	0	0	0	16	26	16	26	0	0	./.	5	6	6	6	19	28	19	28	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778314411	20	23232946	GGGAATAAGAT	G	522	PASS	-	-	-	-	-	Del	-	D	23232946	23232958	10	91	968.28	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	12	6	12	6	26	35	26	35	12	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778324809	20	48344716	AT	A	420	PASS	-	-	-	-	-	Del	-	D	48344716	48344723	1	8	379.597	-	-	6	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	0	7	7	11	22	30	22	30	7	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778325183	20	48832820	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	48832820	48832840	2	15	324.165	-	-	9	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	4	2	5	2	40	52	40	52	5	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778326610	20	51148110	GA	G	360	PASS	-	-	-	-	-	Del	-	D	51148110	51148117	1	15	325.369	-	-	6	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	2	4	3	6	35	36	35	36	3	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778328062	20	53300582	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	53300582	53300598	2	10	271.141	-	-	7	1	-	-	-	./.	0	0	0	0	13	25	13	25	0	0	./.	1	4	1	5	54	65	54	65	1	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778328593	20	54308094	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	54308094	54308101	1	18	374.78	-	-	6	1	1	-	-	./.	0	0	0	0	17	29	17	29	0	0	./.	2	5	3	6	42	34	42	34	3	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778328671	20	54483101	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	54483101	54483108	1	25	429.009	-	-	6	1	1	-	-	./.	0	0	0	0	13	23	13	23	0	0	./.	4	4	5	4	28	39	29	39	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778329377	20	55832521	TATTA	T	329	PASS	BMP7	CCDS13455.1	r.?	-	-	Del	intronic	D	55832521	55832531	4	15	325.369	-	-	2	1	1	BMP7|CCDS13455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMP7|CCDS13455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	18	32	18	0	0	./.	4	2	7	3	63	27	63	27	7	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778339604	21	23797312	CAA	C	360	PASS	-	-	-	-	-	Del	-	D	23797312	23797316	2	7	325.759	-	-	3	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	0	6	9	12	17	24	17	24	9	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778340227	21	25303314	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	25303314	25303322	1	60	751.675	-	-	7	1	1	-	-	./.	0	0	0	0	27	23	27	24	0	0	./.	5	9	9	10	27	22	27	24	9	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778342067	21	29408050	T	TA	251	PASS	-	-	-	-	-	Ins	-	I	29408050	29408054	1	8	375.837	-	-	3	1	1	-	-	./.	0	0	0	0	16	25	16	25	0	0	./.	7	0	7	1	25	19	25	19	7	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778342965	21	31812571	GTCCAGTATAGAAGGTA	G	307	PASS	KRTAP15-1	CCDS13593.1	r.?	-	-	Del	upstream	D	31812571	31812588	16	42	597.224	-	-	1	1	1	KRTAP15-1|CCDS13593.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KRTAP15-1|CCDS13593.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	28	20	28	20	0	0	./.	6	5	5	4	21	20	22	21	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778344440	21	34876077	CT	C	807	PASS	GART	CCDS13627.1	r.?	-	-	Del	downstream	D	34876077	34876079	1	72	812.591	-	-	1	1	1	GART|CCDS13627.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	GART|ENST00000414353|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	20	25	20	0	0	./.	7	8	11	8	28	23	28	23	11	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778347668	21	42382130	GTAAGAC	G	406	PASS	-	-	-	-	-	Del	-	D	42382130	42382137	6	63	760.104	-	-	1	1	1	-	-	./.	0	0	0	0	24	21	24	21	0	0	./.	6	8	9	10	24	21	24	21	9	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778348813	21	45255627	CA	C	720	PASS	-	-	-	-	-	Del	-	D	45255627	45255629	1	45	650.916	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	4	8	5	11	11	22	11	22	5	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778357873	22	33958240	AT	A	1409	PASS	LARGE	CCDS13912.1	r.?	-	-	Del	intronic	D	33958240	33958245	1	160	1299.47	-	-	4	1	1	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LARGE|CCDS13912.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	15	9	17	16	33	27	33	27	17	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778359180	22	37150409	TC	T	1649	PASS	RABL4	CCDS13932.1	r.?	-	-	Del	downstream	D	37150409	37150411	1	221	1519.06	-	-	1	1	1	RABL4|CCDS13932.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RABL4|CCDS13932.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	15	11	15	0	0	./.	12	16	20	23	32	27	32	27	20	23	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778360532	22	40424052	C	CTT	1260	PASS	FAM83F	CCDS14000.2	r.?	-	-	Ins	intronic	I	40424052	40424054	2	130	1116.87	-	-	1	1	1	FAM83F|CCDS14000.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM83F|CCDS14000.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	22	14	0	0	./.	12	9	16	14	30	28	31	28	16	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778375888	3	25487643	GTAGTGTTAGTATCTTTAAAATATTACCCACGTCTCTGTGACATATGGCTGTCATCCTCTGTCTTTACCCTGGAAGTGAGGAAATGCATGAATTTTATAGTAACATGTACAGTCACTGTTAGGAGGAATAGTTTTTATTTCCTTTATCTTAAAGCTGGGCTGAAAA	G	424	PASS	RARB	CCDS2642.1	r.?	-	-	Del	intronic	D	25487643	25487809	165	80	859.563	-	-	1	1	1	RARB|CCDS2642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARB|CCDS2642.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	7	9	0	0	24	21	31	30	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778379960	3	36230349	TTTTATTAGGGA	T	377	PASS	-	-	-	-	-	Del	-	D	36230349	36230364	11	56	698.395	-	-	1	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	7	6	8	8	27	33	27	33	8	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778382331	3	42589826	CATATAAAT	C	609	PASS	SEC22C	CCDS2699.1	r.1237_1244delAUUUAUAU	c.?	p.?	Del	3'UTR variant	D	42589826	42589835	8	130	1126.37	-	-	1	1	1	SEC22C|CCDS2699.1|r.1237_1244delAUUUAUAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SEC22C|CCDS2699.1|r.1237_1244delAUUUAUAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	16	17	16	17	0	0	./.	12	9	14	10	28	26	28	26	14	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778382849	3	44023006	CCCTTTGACCAA	C	377	PASS	-	-	-	-	-	Del	-	D	44023006	44023019	11	54	690.568	-	-	1	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	5	8	8	10	34	26	34	26	8	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778382888	3	44185896	TCTC	T	300	PASS	-	-	-	-	-	Del	-	D	44185896	44185902	3	12	266.807	-	-	1	1	1	-	-	./.	0	0	0	0	22	12	22	12	0	0	./.	3	2	3	4	22	34	22	34	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778386851	3	51789836	TCAAAATG	T	406	PASS	-	-	-	-	-	Del	-	D	51789836	51789844	7	60	752.118	-	-	1	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	5	9	8	11	21	26	21	26	8	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778389872	3	58452179	TTG	T	720	PASS	-	-	-	-	-	Del	-	D	58452179	58452184	2	49	644.672	-	-	2	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	6	6	10	8	25	36	25	36	10	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778393323	3	67138579	CA	C	960	PASS	-	-	-	-	-	Del	-	D	67138579	67138582	1	81	858.961	-	-	2	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	8	8	11	11	38	30	38	30	11	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778398962	3	78839763	CTTTTAATAT	C	551	PASS	ROBO1	CCDS46872.1	r.?	-	-	Del	intronic	D	78839763	78839775	9	108	1017.12	-	-	1	1	1	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	8	11	10	14	32	31	32	31	10	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778400037	3	82126510	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	82126510	82126519	1	6	265.603	-	-	8	1	1	-	-	./.	0	0	0	0	22	15	23	15	0	0	./.	0	5	3	9	34	33	34	33	3	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778400355	3	82964975	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	82964975	82964984	1	6	265.603	-	-	8	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	5	0	6	0	18	2	18	2	6	0	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778400774	3	84308587	T	TA	1020	PASS	-	-	-	-	-	Ins	-	I	84308587	84308595	1	90	903.051	-	-	7	1	1	-	-	./.	0	0	0	0	24	25	25	25	0	0	./.	9	8	10	8	33	33	33	33	10	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778404611	3	98168323	TG	T	540	PASS	-	-	-	-	-	Del	-	D	98168323	98168330	1	28	479.892	-	-	6	1	1	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	3	9	5	25	21	25	21	9	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778412387	3	117904942	ATCAGACCATAGCATC	A	348	PASS	-	-	-	-	-	Del	-	D	117904942	117904960	15	48	644.672	-	-	1	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	7	5	8	6	26	23	26	23	8	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778414052	3	122057032	TA	T	689	PASS	CSTA	CCDS3011.1	r.?	-	-	Del	intronic	D	122057032	122057037	1	45	643.468	-	-	4	1	1	CSTA|CCDS3011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSTA|ENST00000479204|r.737delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	26	24	26	24	0	0	./.	4	8	6	11	26	28	26	28	6	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778415717	3	126069129	C	CTAGGA	834	PASS	KLF15	CCDS3036.1	r.?	-	-	Ins	intronic	I	126069129	126069134	5	88	861.508	-	-	0	1	1	KLF15|CCDS3036.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLF15|CCDS3036.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	16	26	16	0	0	./.	10	7	12	8	43	27	43	27	12	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778415741	3	126127197	AT	A	780	PASS	CCDC37	CCDS3037.1	r.?	-	-	Del	intronic	D	126127197	126127199	1	56	696.589	-	-	1	1	1	CCDC37|CCDS3037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC37|CCDS3037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	6	8	8	25	29	25	29	8	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778417319	3	130382306	TGGAATAGAA	T	493	PASS	COL6A6	CCDS46911.1	r.?	-	-	Del	intronic	D	130382306	130382317	9	90	912.082	-	-	1	1	1	COL6A6|CCDS46911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL6A6|CCDS46911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	8	9	10	10	26	32	26	32	10	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778419926	3	137185319	G	GGT	360	PASS	-	-	-	-	-	Ins	-	I	137185319	137185335	2	15	315.111	-	-	7	1	1	-	-	./.	0	0	0	0	26	15	26	15	0	0	./.	2	4	4	5	31	42	31	42	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778423401	3	145818737	CTGAACT	C	377	PASS	PLOD2	CCDS3132.1	r.?	-	-	Del	intronic	D	145818737	145818744	6	54	697.793	-	-	1	1	1	PLOD2|CCDS3132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLOD2|CCDS3132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	5	8	8	10	24	22	24	22	8	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778429421	3	161417295	GATGGAAGCAAGTTCTGTGTGAAGAAGAGATACACAGACTCTGAAAAGGGGATAGATTGGGAATGGGCTATCATGCATTCATTATGCTCCTCCA	G	261	PASS	-	-	-	-	-	Del	-	D	161417295	161417392	93	28	482.902	-	-	1	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	6	3	0	0	27	13	33	16	6	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778430782	3	164876148	TTTATAATCATACAGTCTCATA	T	319	PASS	-	-	-	-	-	Del	-	D	164876148	164876172	21	42	589.143	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	6	5	6	5	26	23	26	23	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778431978	3	168090896	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	168090896	168090904	1	35	530.002	-	-	7	1	1	-	-	./.	0	0	0	0	25	15	25	16	0	0	./.	6	4	6	4	47	33	47	34	6	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778432218	3	168809019	GAAAATCAA	G	435	PASS	MECOM	CCDS3205.1	r.?	-	-	Del	intronic	D	168809019	168809030	8	66	805.84	-	-	1	1	1	MECOM|CCDS3205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MECOM|CCDS3205.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	22	20	22	0	0	./.	10	5	10	7	37	22	37	22	10	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778432954	3	170338135	C	CT	1132	PASS	CLDN11	ENST00000486975	r.?	-	-	Ins	intronic	I	170338135	170338144	1	110	1009.29	-	-	8	1	1	CLDN11|ENST00000486975|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLDN11|ENST00000486975|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	25	18	25	0	0	./.	10	9	15	12	35	36	35	36	15	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778436791	3	179608831	TCTCAGATTTA	T	551	PASS	PEX5L	CCDS3236.1	r.?	-	-	Del	intronic	D	179608831	179608847	10	104	1015.91	-	-	1	1	1	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	22	22	22	0	0	./.	12	7	13	7	38	22	38	22	13	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778441714	3	190855138	C	CA	749	PASS	-	-	-	-	-	Ins	-	I	190855138	190855148	1	44	686.354	-	-	9	1	1	-	-	./.	0	0	0	0	22	28	22	28	0	0	./.	3	10	9	14	39	39	39	39	9	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778444107	3	195937376	AGGGGTCC	A	290	PASS	ZDHHC19	CCDS43190.1	r.?	-	-	Del	intronic	D	195937376	195937384	7	27	535.421	-	-	1	1	1	ZDHHC19|CCDS43190.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZDHHC19|CCDS43190.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	37	12	37	12	0	0	./.	8	2	11	5	41	21	41	21	11	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778444974	3	197447852	A	AT	300	PASS	MIR922	CCDS46987.1	r.?	-	-	Ins	intronic	I	197447852	197447862	1	12	265.603	-	-	9	1	1	MIR922|CCDS46987.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MIR922|CCDS46987.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	36	18	37	0	0	./.	2	3	2	3	38	37	38	37	2	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778446716	4	3438215	TC	T	660	PASS	RGS12	CCDS3367.1	r.?	-	-	Del	downstream	D	3438215	3438219	1	36	590.156	-	-	3	1	1	RGS12|CCDS3367.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	RGS12|CCDS3366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	21	22	21	0	0	./.	8	3	15	7	38	26	38	26	15	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778447795	4	5938871	G	GA	300	PASS	C4orf50	CCDS3384.1	r.?	-	-	Ins	intronic	I	5938871	5938881	1	10	262.506	-	-	9	1	1	C4orf50|CCDS3384.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	C4orf50|CCDS3384.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	33	20	34	0	0	./.	1	4	2	4	46	37	47	38	2	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778447843	4	6054894	C	CA	360	PASS	JAKMIP1	CCDS47005.1	r.?	-	-	Ins	intronic	I	6054894	6054903	1	15	318.619	-	-	8	1	1	JAKMIP1|CCDS47005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	JAKMIP1|CCDS47005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	24	25	24	0	0	./.	4	2	5	5	28	49	28	49	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778451997	4	17105636	TTTTAAC	T	319	PASS	-	-	-	-	-	Del	-	D	17105636	17105646	6	42	590.758	-	-	1	1	1	-	-	./.	0	0	0	0	32	18	32	18	0	0	./.	6	5	7	10	24	31	24	31	7	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778452534	4	18319947	CCT	C	1740	PASS	-	-	-	-	-	Del	-	D	18319947	18319951	2	238	1553.24	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	16	13	19	14	44	41	44	41	19	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778453251	4	20408992	GT	G	1140	PASS	SLIT2	ENST00000504154	r.?	-	-	Del	intronic	D	20408992	20408994	1	110	1020.4	-	-	1	1	1	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	20	24	20	0	0	./.	9	10	12	14	31	40	31	40	12	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778456907	4	28992830	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	28992830	28992837	1	18	371.722	-	-	6	1	1	-	-	./.	0	0	0	0	32	26	32	26	0	0	./.	2	5	2	5	33	30	33	32	2	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778456964	4	29288446	CT	C	660	PASS	-	-	-	-	-	Del	-	D	29288446	29288449	1	40	590.758	-	-	2	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	7	4	9	6	25	29	25	29	9	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778458630	4	33531350	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	33531350	33531360	1	12	263.71	-	-	9	1	1	-	-	./.	0	0	0	0	33	31	33	31	0	0	./.	3	2	4	5	46	42	47	43	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778462444	4	40956083	CCTGGCTTCTGAACAAGGACCA	C	435	PASS	APBB2	CCDS3837.1	r.?	-	-	Del	intronic	D	40956083	40956107	21	52	805.579	-	-	1	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	12	3	7	31	32	31	37	3	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778463584	4	43797339	CTTGAA	C	805	PASS	-	-	-	-	-	Del	-	D	43797339	43797350	5	77	859.284	-	-	2	1	1	-	-	./.	0	0	0	0	26	24	26	24	0	0	./.	6	10	8	11	25	29	25	29	8	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778463739	4	44284153	G	GT	420	PASS	KCTD8	CCDS3467.1	r.?	-	-	Ins	intronic	I	44284153	44284163	1	20	371.12	-	-	9	1	1	KCTD8|CCDS3467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCTD8|CCDS3467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	16	0	0	./.	4	3	5	3	36	28	36	29	5	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778464007	4	44868260	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	44868260	44868266	1	18	371.722	-	-	5	1	1	-	-	./.	0	0	0	0	44	21	44	21	0	0	./.	2	5	6	8	39	40	40	40	6	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778464959	4	47698543	AC	A	780	PASS	CORIN	CCDS3477.1	r.?	-	-	Del	intronic	D	47698543	47698546	1	50	698.168	-	-	2	1	1	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	27	18	27	0	0	./.	4	9	5	11	36	36	36	36	5	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778469238	4	58602159	T	TAC	269	PASS	-	-	-	-	-	Ins	-	I	58602159	58602177	2	12	261.904	-	-	8	1	-	-	-	./.	0	0	0	0	20	19	21	19	0	0	./.	3	2	3	2	36	36	36	37	3	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778477961	4	80610149	AGTT	A	749	PASS	-	-	-	-	-	Del	-	D	80610149	80610156	3	56	698.168	-	-	2	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	6	7	9	9	31	43	31	43	9	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778480373	4	86618279	AT	A	660	PASS	ARHGAP24	CCDS34025.1	r.?	-	-	Del	intronic	D	86618279	86618282	1	36	590.758	-	-	2	1	1	ARHGAP24|CCDS34025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP24|CCDS34025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	8	3	13	5	33	23	33	23	13	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778481159	4	88427675	C	CCT	637	PASS	SPARCL1	CCDS3622.1	r.?	-	-	Ins	intronic	I	88427675	88427688	2	40	573.9	-	-	6	1	1	SPARCL1|CCDS3622.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SPARCL1|CCDS3622.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	17	18	0	0	./.	4	7	5	12	38	38	38	38	5	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778482236	4	91514398	C	CA	840	PASS	FAM190A	CCDS47100.1	r.?	-	-	Ins	intronic	I	91514398	91514407	1	64	743.445	-	-	8	1	1	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	27	20	27	0	0	./.	7	7	9	8	35	32	35	32	9	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778482729	4	92940517	AT	A	480	PASS	-	-	-	-	-	Del	-	D	92940517	92940523	1	21	429.642	-	-	5	1	1	-	-	./.	0	0	0	0	25	22	25	22	0	0	./.	6	2	8	5	32	27	32	27	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778483471	4	95426551	AGTTGTGCGCCACCAT	A	464	PASS	PDLIM5	CCDS3641.1	r.?	-	-	Del	intronic	D	95426551	95426568	15	77	858.08	-	-	1	1	1	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDLIM5|CCDS3641.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	25	23	25	0	0	./.	6	10	6	10	25	25	26	25	7	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778485572	4	100873467	TCATCTATTTTCACATGGTTGAAAGATTAAGGAAAAAGGTATGCAATGTACATAGTAGCATGTGTTTGGCACGTAGTTAG	T	377	PASS	H2AFZ	CCDS3654.1	r.?	-	-	Del	upstream	D	100873467	100873548	79	56	698.168	-	-	1	1	1	H2AFZ|CCDS3654.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635:SO:0001636	H2AFZ|CCDS3654.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635:SO:0001636	./.	0	0	0	0	8	14	8	14	0	0	./.	7	6	0	0	16	18	23	24	7	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778486699	4	104267553	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	104267553	104267561	1	12	265.516	-	-	7	1	1	-	-	./.	0	0	0	0	22	24	22	24	0	0	./.	3	2	7	5	34	31	34	31	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778488728	4	109970470	GATAAGACTTTATGTGGTCATTTCCAAAAAAAGAAAAACAGTAAGTGAACTCATTTATACAGATCATCTCAGTTTCAAAAGAAATTTTACTTGACTTTTCTGTTTTACATTGGGGATTTGT	G	493	PASS	COL25A1	CCDS43258.1	r.?	-	-	Del	intronic	D	109970470	109970591	120	60	911.785	-	-	1	1	1	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	14	3	0	0	24	23	38	26	14	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778489672	4	112152375	AG	A	360	PASS	-	-	-	-	-	Del	-	D	112152375	112152378	1	15	322.232	-	-	2	1	1	-	-	./.	0	0	0	0	17	24	17	24	0	0	./.	2	4	6	6	24	18	24	18	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778489774	4	112386234	GGAAAA	G	420	PASS	-	-	-	-	-	Del	-	D	112386234	112386252	5	20	375.937	-	-	3	1	1	-	-	./.	0	0	0	0	32	26	32	26	0	0	./.	4	3	6	7	37	27	37	27	6	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778490025	4	113349203	AGC	A	1080	PASS	ALPK1	CCDS3697.1	r.?	-	-	Del	intronic	D	113349203	113349206	2	99	966.695	-	-	1	1	1	ALPK1|CCDS3697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALPK1|CCDS3697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	8	10	9	13	31	32	31	32	9	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778494721	4	125140670	CCTTCAGCT	C	435	PASS	-	-	-	-	-	Del	-	D	125140670	125140682	8	72	805.579	-	-	1	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	8	7	0	0	32	18	33	18	8	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778494946	4	125736513	GAC	G	689	PASS	-	-	-	-	-	Del	-	D	125736513	125736517	2	45	644.463	-	-	1	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	4	8	7	12	31	27	31	27	7	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778495297	4	126641086	CTA	C	720	PASS	-	-	-	-	-	Del	-	D	126641086	126641089	2	45	644.463	-	-	1	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	8	4	9	5	43	11	43	11	9	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778499271	4	136552649	T	TA	900	PASS	-	-	-	-	-	Ins	-	I	136552649	136552655	1	72	788.119	-	-	5	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	8	7	16	12	45	34	45	34	16	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778501390	4	141787817	AATGAGTAT	A	464	PASS	RNF150	ENST00000306799	r.3435_3442delAUACUCAU	c.?	p.?	Del	3'UTR variant	D	141787817	141787826	8	80	859.284	-	-	1	1	1	RNF150|ENST00000306799|r.3435_3442delAUACUCAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RNF150|ENST00000306799|r.3435_3442delAUACUCAU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	16	13	16	0	0	./.	9	7	13	8	33	33	33	33	13	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778502288	4	144298282	GTT	G	1320	PASS	GAB1	CCDS3760.1	r.?	-	-	Del	intronic	D	144298282	144298286	2	144	1177.3	-	-	3	1	1	GAB1|CCDS3760.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GAB1|CCDS3760.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	23	21	23	0	0	./.	11	11	21	15	41	45	41	45	21	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778503496	4	147997391	GCTAAAGAAACTT	G	464	PASS	-	-	-	-	-	Del	-	D	147997391	147997405	12	80	859.284	-	-	1	1	1	-	-	./.	0	0	0	0	27	19	27	19	0	0	./.	7	9	9	11	28	32	28	32	9	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778503776	4	148614652	GTGTTT	G	747	PASS	-	-	-	-	-	Del	-	D	148614652	148614658	5	63	748.261	-	-	1	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	8	6	8	8	29	29	29	29	8	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778505388	4	152401662	GTA	G	720	PASS	FAM160A1	CCDS47146.1	r.?	-	-	Del	intronic	D	152401662	152401666	2	49	644.463	-	-	1	1	1	FAM160A1|CCDS47146.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM160A1|CCDS47146.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	24	15	24	0	0	./.	6	6	8	7	34	29	34	29	8	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778507823	4	158783298	T	TA	492	PASS	-	-	-	-	-	Ins	-	I	158783298	158783308	1	28	474.919	-	-	9	1	1	-	-	./.	0	0	0	0	23	27	23	28	0	0	./.	3	6	4	8	31	26	31	27	4	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778509292	4	162032193	TC	T	480	PASS	-	-	-	-	-	Del	-	D	162032193	162032196	1	24	429.04	-	-	2	1	1	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	5	3	16	6	44	25	44	25	16	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778509723	4	163152210	AT	A	720	PASS	-	-	-	-	-	Del	-	D	163152210	163152214	1	45	644.463	-	-	3	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	4	8	7	11	25	23	25	23	7	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778510466	4	164842042	ACAT	A	420	PASS	MARCH1	CCDS45732.1	r.?	-	-	Del	intronic	D	164842042	164842047	3	20	374.733	-	-	1	1	1	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MARCH1|CCDS45732.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	23	25	23	0	0	./.	3	4	5	6	25	20	25	20	5	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778517520	4	181671407	AGT	A	490	PASS	-	-	-	-	-	Del	-	D	181671407	181671412	2	35	537.053	-	-	2	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	6	4	9	6	29	23	29	23	9	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778520723	4	188105211	TG	T	660	PASS	-	-	-	-	-	Del	-	D	188105211	188105213	1	42	590.156	-	-	1	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	6	5	8	6	37	32	37	32	8	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778523403	5	567557	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	567557	567576	2	12	268.895	-	-	9	1	1	-	-	./.	0	0	0	0	32	17	32	17	0	0	./.	2	3	2	3	35	28	35	28	2	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778525245	5	5131063	AG	A	600	PASS	-	-	-	-	-	Del	-	D	5131063	5131065	1	32	536.586	-	-	1	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	3	7	4	7	24	42	24	42	4	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778525525	5	5880045	CACAT	C	569	PASS	-	-	-	-	-	Del	-	D	5880045	5880050	4	32	537.188	-	-	1	1	1	-	-	./.	0	0	0	0	25	21	25	21	0	0	./.	7	3	8	7	37	22	37	22	8	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778527059	5	9657634	G	GA	1560	PASS	-	-	-	-	-	Ins	-	I	9657634	9657640	1	195	1380.19	-	-	5	1	1	-	-	./.	0	0	0	0	19	23	19	23	0	0	./.	14	12	16	15	33	35	34	35	16	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778527779	5	11327825	GGTT	G	509	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11327825	11327832	3	30	484.011	-	-	2	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	18	26	18	0	0	./.	4	5	4	6	25	36	25	36	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778539476	5	38639000	AC	A	360	PASS	-	-	-	-	-	Del	-	D	38639000	38639003	1	16	322.072	-	-	2	1	1	-	-	./.	0	0	0	0	24	15	24	15	0	0	./.	3	3	5	4	30	33	30	33	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778540730	5	41951614	TCGCCCTGAAATTCCTC	T	696	PASS	-	-	-	-	-	Del	-	D	41951614	41951632	16	153	1287.08	-	-	1	1	1	-	-	./.	0	0	0	0	12	25	12	25	0	0	./.	8	16	7	16	19	41	20	41	8	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778541486	5	43881048	C	CT	1620	PASS	-	-	-	-	-	Ins	-	I	43881048	43881049	1	198	1434.57	-	-	0	1	1	-	-	./.	0	0	0	0	27	17	27	18	0	0	./.	17	10	20	16	35	30	35	30	20	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778541656	5	44568785	ACT	A	540	PASS	-	-	-	-	-	Del	-	D	44568785	44568792	2	30	482.204	-	-	3	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	4	5	4	5	33	21	33	21	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778542058	5	46105807	GT	G	960	PASS	-	-	-	-	-	Del	-	D	46105807	46105814	1	80	860.463	-	-	6	1	1	-	-	./.	0	0	0	0	23	33	23	33	0	0	./.	9	7	13	12	27	25	27	25	13	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778543131	5	52560655	ATCAG	A	300	PASS	-	-	-	-	-	Del	-	D	52560655	52560665	4	12	268.895	-	-	2	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	2	3	2	3	36	22	36	22	2	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778550141	5	70685658	AT	A	300	PASS	-	-	-	-	-	Del	-	D	70685658	70685664	1	12	268.895	-	-	5	1	1	-	-	./.	0	0	0	0	21	26	21	26	0	0	./.	3	2	4	2	30	15	30	15	4	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778550685	5	72068216	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	72068216	72068223	1	21	425.415	-	-	6	1	1	-	-	./.	0	0	0	0	29	25	30	25	0	0	./.	6	2	8	4	29	31	29	31	8	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778552119	5	75455339	AG	A	360	PASS	SV2C	ENST00000502798	r.?	-	-	Del	intronic	D	75455339	75455344	1	15	322.072	-	-	4	1	1	SV2C|ENST00000502798|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SV2C|ENST00000502798|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	2	4	4	7	32	24	32	24	4	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778554674	5	81109766	GACAAATTTTTTA	G	261	PASS	-	-	-	-	-	Del	-	D	81109766	81109781	12	30	484.011	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	5	4	5	4	34	21	34	21	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778556995	5	87191322	CAAGATGAAAAAGAATTATGAAGAG	C	870	PASS	-	-	-	-	-	Del	-	D	87191322	87191348	24	252	1613.37	-	-	1	1	1	-	-	./.	0	0	0	0	32	33	32	33	0	0	./.	13	17	11	12	34	33	36	38	13	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778558571	5	92624588	GAACTTA	G	435	PASS	-	-	-	-	-	Del	-	D	92624588	92624604	6	70	806.684	-	-	2	1	1	-	-	./.	0	0	0	0	22	14	22	14	0	0	./.	9	6	9	8	21	26	21	26	9	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778560828	5	99139536	T	TA	540	PASS	-	-	-	-	-	Ins	-	I	99139536	99139544	1	28	478.592	-	-	7	1	1	-	-	./.	0	0	0	0	18	19	18	20	0	0	./.	3	6	4	6	27	29	27	29	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778560908	5	99282795	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	99282795	99282803	1	44	689.494	-	-	7	1	1	-	-	./.	0	0	0	0	26	21	26	22	0	0	./.	10	3	16	7	33	21	33	22	16	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778564132	5	108144071	A	AT	300	PASS	FER	CCDS4098.1	r.?	-	-	Ins	intronic	I	108144071	108144081	1	12	265.282	-	-	9	1	1	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FER|CCDS4098.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	32	29	33	0	0	./.	3	2	3	2	43	34	43	34	3	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778571749	5	128163864	ATTGAAAAAAAGAGAAATTGATCAGTGT	A	261	PASS	SLC27A6	ENST00000508645	r.?	-	-	Del	intronic	D	128163864	128163893	27	30	484.011	-	-	1	1	1	SLC27A6|ENST00000508645|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SLC27A6|ENST00000508645|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	4	5	3	2	32	33	33	36	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778572677	5	130940937	AAAC	A	900	PASS	RAPGEF6	ENST00000509018	r.?	-	-	Del	intronic	D	130940937	130940955	3	52	806.082	-	-	5	1	1	RAPGEF6|ENST00000509018|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF6|ENST00000509018|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	21	31	21	0	0	./.	3	12	7	15	18	32	18	32	7	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778572879	5	131514387	AGTACAAAATGGGGAGG	A	261	PASS	-	-	-	-	-	Del	-	D	131514387	131514404	16	30	484.011	-	-	1	1	1	-	-	./.	0	0	0	0	27	17	27	17	0	0	./.	5	4	4	4	24	35	25	35	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778572886	5	131539531	TA	T	600	PASS	P4HA2	CCDS4151.1	r.1729delU	c.1160delT	p.L387fs*12	Del	frameshift	D	131539531	131539533	1	35	537.188	-	-	1	1	1	P4HA2|CCDS4151.1|r.1729delU|c.1160delT|p.L387fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	P4HA2|CCDS4151.1|r.1729delU|c.1160delT|p.L387fs*12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	20	11	20	11	0	0	./.	6	4	6	6	43	23	43	23	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778573104	5	132133344	TGGG	T	418	PASS	SEPT8	ENST00000371493	r.?	-	-	Del	intronic	D	132133344	132133349	3	24	424.813	-	-	4	1	1	SEPT8|ENST00000371493|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SEPT8|ENST00000371493|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	13	23	13	0	0	./.	5	3	8	5	25	17	25	17	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778573862	5	133886591	AC	A	540	PASS	PHF15	CCDS4176.1	r.?	-	-	Del	intronic	D	133886591	133886593	1	30	484.011	-	-	1	1	1	PHF15|CCDS4176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHF15|CCDS4176.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	5	4	6	6	35	29	35	29	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778577497	5	142577500	TATAA	T	329	PASS	ARHGAP26	CCDS47297.1	r.?	-	-	Del	intronic	D	142577500	142577510	4	12	322.674	-	-	2	1	1	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP26|CCDS47297.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	15	19	15	0	0	./.	5	1	5	3	37	34	37	34	5	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778577764	5	143410151	C	CT	1200	PASS	-	-	-	-	-	Ins	-	I	143410151	143410160	1	112	1063.54	-	-	8	1	1	-	-	./.	0	0	0	0	25	22	25	22	0	0	./.	7	13	11	21	21	46	21	46	11	21	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778577989	5	144181551	AGG	A	1020	PASS	-	-	-	-	-	Del	-	D	144181551	144181555	2	88	914.242	-	-	3	1	1	-	-	./.	0	0	0	0	27	21	27	21	0	0	./.	7	10	14	14	25	29	25	29	14	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778584979	5	162524385	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	162524385	162524394	1	12	265.885	-	-	8	1	1	-	-	./.	0	0	0	0	18	18	19	18	0	0	./.	3	2	5	5	28	25	29	26	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778585741	5	164592622	CA	C	1380	PASS	-	-	-	-	-	Del	-	D	164592622	164592624	1	156	1229.69	-	-	1	1	1	-	-	./.	0	0	0	0	14	25	14	25	0	0	./.	11	12	14	18	23	37	23	37	14	18	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778588370	5	171426157	CCTAAGCCTAAGAATAAACTGGA	C	597	PASS	FBXW11	CCDS34289.1	r.?	-	-	Del	intronic	D	171426157	171426180	22	132	1128.76	-	-	1	1	1	FBXW11|CCDS34289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW11|CCDS34289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	10	11	8	10	20	23	22	24	10	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778588888	5	172349851	TG	T	269	PASS	ERGIC1	CCDS34292.1	r.?	-	-	Del	intronic	D	172349851	172349855	1	10	268.895	-	-	3	1	1	ERGIC1|CCDS34292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERGIC1|CCDS34292.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	23	11	23	0	0	./.	1	4	3	5	17	28	17	28	3	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778589524	5	173765600	AT	A	360	PASS	-	-	-	-	-	Del	-	D	173765600	173765606	1	12	321.47	-	-	5	1	1	-	-	./.	0	0	0	0	21	25	21	25	0	0	./.	1	5	4	6	34	36	34	36	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778594979	6	4600423	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	4600423	4600432	1	12	266.089	-	-	8	1	1	-	-	./.	0	0	0	0	22	23	23	23	0	0	./.	2	3	3	4	23	33	25	33	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778595423	6	5642813	CCCA	C	776	PASS	FARS2	CCDS4494.1	r.?	-	-	Del	intronic	D	5642813	5642817	3	70	800.675	-	-	1	1	1	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	6	9	11	12	20	23	20	23	11	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778597882	6	11245239	AT	A	720	PASS	NEDD9	ENST00000504387	r.?	-	-	Del	intronic	D	11245239	11245244	1	48	642.225	-	-	4	1	1	NEDD9|ENST00000504387|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEDD9|ENST00000504387|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	16	24	16	0	0	./.	7	5	9	7	25	22	25	22	9	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778599865	6	15959870	G	GT	697	PASS	-	-	-	-	-	Ins	-	I	15959870	15959872	1	45	638.011	-	-	1	1	1	-	-	./.	0	0	0	0	24	9	24	9	0	0	./.	8	4	12	9	33	23	33	23	12	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778607322	6	32171572	AG	A	540	PASS	NOTCH4	CCDS34420.1	r.3344delC	c.3205delC	p.L1069fs*58	Del	frameshift	D	32171572	32171577	1	28	484.378	-	-	4	1	1	NOTCH4|CCDS34420.1|r.3344delC|c.3205delC|p.L1069fs*58|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	NOTCH4|CCDS34420.1|r.3344delC|c.3205delC|p.L1069fs*58|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	17	19	17	19	0	0	./.	6	3	11	6	21	23	21	23	11	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778607809	6	32584543	T	TTA	749	PASS	-	-	-	-	-	Ins	-	I	32584543	32584548	2	56	684.004	-	-	2	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	7	6	11	11	24	25	24	25	11	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778613366	6	44873645	GCAA	G	302	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Del	intronic	D	44873645	44873649	3	21	429.956	-	-	1	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	20	23	20	0	0	./.	6	2	7	2	35	11	35	11	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778613994	6	46828312	ATAGC	A	329	PASS	GPR116	CCDS4919.1	r.?	-	-	Del	intronic	D	46828312	46828318	4	7	322.919	-	-	1	1	1	GPR116|CCDS4919.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR116|CCDS4919.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	16	24	16	0	0	./.	6	0	7	2	33	26	33	26	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778614850	6	49113714	GT	G	1320	PASS	-	-	-	-	-	Del	-	D	49113714	49113720	1	140	1184.04	-	-	5	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	9	13	11	13	30	26	30	26	11	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778617356	6	56339286	C	CA	329	PASS	DST	CCDS47441.1	r.?	-	-	Ins	intronic	I	56339286	56339292	1	12	317.5	-	-	5	1	-	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	30	19	30	0	0	./.	1	5	2	6	20	47	22	47	2	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778617992	6	57383397	AGG	A	269	PASS	PRIM2	ENST00000425433	r.?	-	-	Del	intronic	D	57383397	57383401	2	10	269.099	-	-	3	1	1	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRIM2|ENST00000425433|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	61	59	61	59	0	0	./.	1	4	4	7	79	76	79	76	4	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778621511	6	68366345	GTGCAGGT	G	290	PASS	-	-	-	-	-	Del	-	D	68366345	68366354	7	36	536.994	-	-	1	1	1	-	-	./.	0	0	0	0	25	28	25	28	0	0	./.	5	5	6	5	32	18	32	18	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778623209	6	73020664	T	TC	720	PASS	RIMS1	CCDS47449.1	r.?	-	-	Ins	intronic	I	73020664	73020666	1	45	638.613	-	-	1	1	1	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	24	25	24	0	0	./.	8	4	9	8	26	20	28	20	9	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778625943	6	80844383	AT	A	1560	PASS	BCKDHB	CCDS4994.1	r.?	-	-	Del	intronic	D	80844383	80844388	1	195	1392.69	-	-	4	1	1	BCKDHB|CCDS4994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCKDHB|CCDS4994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	12	14	15	15	29	31	29	31	16	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778627449	6	85969039	GA	G	660	PASS	-	-	-	-	-	Del	-	D	85969039	85969041	1	42	592.018	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	5	6	6	11	37	29	37	29	6	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778629909	6	92920648	CT	C	660	PASS	-	-	-	-	-	Del	-	D	92920648	92920652	1	40	592.018	-	-	3	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	4	7	6	9	26	29	26	29	6	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778630106	6	93462680	TTGTC	T	418	PASS	-	-	-	-	-	Del	-	D	93462680	93462685	4	25	430.559	-	-	1	1	1	-	-	./.	0	0	0	0	22	21	22	21	0	0	./.	4	4	5	8	25	35	25	35	5	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778632507	6	100563824	TG	T	540	PASS	-	-	-	-	-	Del	-	D	100563824	100563829	1	30	484.378	-	-	4	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	5	8	8	17	23	17	23	8	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778634101	6	105461206	A	AT	600	PASS	LIN28B	CCDS34504.1	r.?	-	-	Ins	intronic	I	105461206	105461216	1	35	529.167	-	-	9	1	1	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LIN28B|CCDS34504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	24	18	25	0	0	./.	4	6	5	7	23	31	23	31	5	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778634518	6	106635737	CAA	C	360	PASS	ATG5	CCDS5055.1	r.?	-	-	Del	intronic	D	106635737	106635742	2	15	322.919	-	-	4	1	1	ATG5|CCDS5055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATG5|CCDS5055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	4	2	8	10	23	20	23	20	8	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778638484	6	116866269	C	CAT	300	PASS	FAM26D	CCDS5109.1	r.?	-	-	Ins	intronic	I	116866269	116866281	2	10	263.078	-	-	5	1	-	FAM26D|CCDS5109.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM26D|CCDS5109.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	27	21	27	0	0	./.	1	4	8	6	26	24	27	24	8	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778642975	6	130745673	C	CT	540	PASS	TMEM200A	CCDS5140.1	r.?	-	-	Ins	intronic	I	130745673	130745681	1	30	478.96	-	-	7	1	1	TMEM200A|CCDS5140.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TMEM200A|CCDS5140.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	26	20	27	0	0	./.	4	5	6	11	37	43	38	43	6	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778645753	6	138741163	G	GCGAGA	925	PASS	NHSL1	CCDS47487.1	r.?	-	-	Ins	downstream	I	138741163	138741169	5	96	913.367	-	-	1	1	1	NHSL1|CCDS47487.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NHSL1|CCDS47487.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	17	17	17	0	0	./.	7	11	11	11	27	24	27	24	11	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778645768	6	138803214	GA	G	900	PASS	NHSL1	CCDS47487.1	r.?	-	-	Del	intronic	D	138803214	138803218	1	60	803.685	-	-	3	1	1	NHSL1|CCDS47487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NHSL1|CCDS47487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	11	14	15	25	31	25	31	14	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778648186	6	146664087	A	AT	660	PASS	GRM1	CCDS47497.1	r.?	-	-	Ins	intronic	I	146664087	146664096	1	36	576.966	-	-	8	1	1	GRM1|CCDS47497.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRM1|CCDS47497.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	33	21	34	22	0	0	./.	8	3	10	5	30	32	30	32	10	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778650879	6	153198566	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	153198566	153198575	1	48	637.409	-	-	8	1	1	-	-	./.	0	0	0	0	26	30	26	31	0	0	./.	5	7	7	9	25	29	25	30	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778654947	6	163367288	G	GA	420	PASS	PACRG	CCDS43524.1	r.?	-	-	Ins	intronic	I	163367288	163367298	1	20	372.524	-	-	9	1	1	PACRG|CCDS43524.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PACRG|CCDS43524.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	29	22	30	0	0	./.	4	3	5	4	25	22	25	22	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778660378	7	5591498	A	AT	420	PASS	ACTB	ENST00000443528	r.?	-	-	Ins	intronic	I	5591498	5591499	1	14	365.783	-	-	0	1	1	ACTB|ENST00000443528|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ACTB|ENST00000443528|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	8	19	8	0	0	./.	1	6	3	11	27	33	28	33	3	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778661859	7	8268685	G	GT	300	PASS	ICA1	CCDS34602.1	r.?	-	-	Ins	intronic	I	8268685	8268695	1	10	266.004	-	-	9	1	1	ICA1|CCDS34602.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ICA1|CCDS34602.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	25	28	25	0	0	./.	1	4	1	4	21	45	21	45	1	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778664382	7	14480985	CAGA	C	480	PASS	DGKB	CCDS47547.1	r.?	-	-	Del	intronic	D	14480985	14480991	3	24	430.423	-	-	1	1	1	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DGKB|CCDS47547.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	21	18	21	0	0	./.	3	5	4	6	28	34	28	34	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778665184	7	16565670	A	AT	420	PASS	SOSTDC1	ENST00000396652	r.?	-	-	Ins	intronic	I	16565670	16565680	1	18	371.201	-	-	9	1	1	SOSTDC1|ENST00000396652|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SOSTDC1|ENST00000396652|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	17	25	17	0	0	./.	5	2	8	4	37	38	37	40	8	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778665609	7	17603305	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	17603305	17603314	1	30	478.807	-	-	8	1	1	-	-	./.	0	0	0	0	32	35	32	35	0	0	./.	5	4	8	5	39	43	40	44	8	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778667190	7	21482943	TTACGATCGTAAAAGGA	T	406	PASS	SP4	CCDS5373.1	r.?	-	-	Del	intronic	D	21482943	21482960	16	39	750.831	-	-	1	1	1	SP4|CCDS5373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP4|CCDS5373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	26	8	26	0	0	./.	2	12	2	12	22	30	23	30	3	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778674857	7	39804194	TGGATGCTTACATTGTCTCATC	T	272	PASS	-	-	-	-	-	Del	-	D	39804194	39804216	21	40	645.634	-	-	1	1	1	-	-	./.	0	0	0	0	25	24	25	24	0	0	./.	3	9	3	9	24	26	24	26	3	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778675697	7	41601773	TAAGATATG	T	290	PASS	ENSG00000236089	ENST00000443116	r.?	-	-	Del	intronic	D	41601773	41601783	8	35	538.028	-	-	1	1	1	ENSG00000236089|ENST00000443116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000236089|ENST00000443116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	4	6	7	9	41	29	41	29	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778676687	7	44020949	AG	A	264	PASS	-	-	-	-	-	Del	-	D	44020949	44020951	1	12	319.807	-	-	1	1	-	-	-	./.	0	0	0	0	16	4	16	4	0	0	./.	5	1	6	4	29	13	30	13	6	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778676805	7	44248860	GGAGCCTGGGAACCTGCATTTTAT	G	580	PASS	YKT6	CCDS5482.1	r.?	-	-	Del	intronic	D	44248860	44248884	23	120	1071.84	-	-	1	1	1	YKT6|CCDS5482.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YKT6|CCDS5482.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	14	24	14	0	0	./.	9	11	9	10	29	32	29	33	9	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778678106	7	47596180	TTTGAC	T	329	PASS	TNS3	CCDS5506.2	r.?	-	-	Del	intronic	D	47596180	47596188	5	16	315.592	-	-	1	1	1	TNS3|CCDS5506.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TNS3|CCDS5506.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	26	24	26	0	0	./.	3	3	3	4	23	22	23	22	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778678477	7	48347949	A	AT	300	PASS	ABCA13	CCDS47584.1	r.?	-	-	Ins	intronic	I	48347949	48347958	1	10	266.004	-	-	8	1	1	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABCA13|CCDS47584.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	21	16	21	0	0	./.	1	4	2	6	35	40	36	40	2	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778685313	7	65191246	GAGGTGGAGGTGCCCTAGGGGGCTCCTCACCA	G	479	PASS	-	-	-	-	-	Del	-	D	65191246	65191281	31	88	914.046	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	10	7	0	0	32	26	34	27	10	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778688805	7	71007427	AC	A	809	PASS	WBSCR17	CCDS5540.1	r.?	-	-	Del	intronic	D	71007427	71007432	1	64	742.402	-	-	4	1	1	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WBSCR17|CCDS5540.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	7	7	9	11	26	26	26	26	9	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778689746	7	72659193	GCTGCAGTGCA	G	371	PASS	-	-	-	-	-	Del	-	D	72659193	72659204	10	72	860.845	-	-	1	1	1	-	-	./.	0	0	0	0	25	9	25	9	0	0	./.	11	5	12	5	35	15	35	15	12	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778693309	7	79658655	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	79658655	79658661	1	10	266.004	-	-	5	1	1	-	-	./.	0	0	0	0	21	26	21	26	0	0	./.	4	1	6	3	36	26	36	27	6	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778693659	7	80497097	TCAAA	T	927	PASS	SEMA3C	CCDS5596.1	r.?	-	-	Del	intronic	D	80497097	80497102	4	78	914.046	-	-	1	1	1	SEMA3C|CCDS5596.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA3C|CCDS5596.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	10	24	10	0	0	./.	12	5	15	6	36	23	36	23	15	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778696533	7	88537905	G	GT	360	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Ins	intronic	I	88537905	88537913	1	15	319.205	-	-	7	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	24	23	25	0	0	./.	4	2	5	4	35	39	35	39	5	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778698696	7	94547916	TCATCCTAGAAAGAGACCCTGTGTCTGTGAATTGTCATTCC	T	464	PASS	PPP1R9A	CCDS34683.1	r.?	-	-	Del	intronic	D	94547916	94547959	40	80	857.835	-	-	1	1	1	PPP1R9A|CCDS34683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R9A|CCDS34683.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	18	10	18	0	0	./.	7	9	5	6	29	28	31	31	7	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778701724	7	100816317	C	CAG	540	PASS	C7orf52	CCDS5713.1	r.?	-	-	Ins	intronic	I	100816317	100816322	2	28	470.98	-	-	2	1	1	C7orf52|CCDS5713.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf52|CCDS5713.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	18	21	18	0	0	./.	3	6	4	7	36	39	36	40	4	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778705485	7	108129272	GTTTTATTAA	G	348	PASS	PNPLA8	CCDS34733.1	r.?	-	-	Del	intronic	D	108129272	108129283	9	45	645.032	-	-	1	1	1	PNPLA8|CCDS34733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PNPLA8|CCDS34733.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	8	4	9	4	33	19	33	19	9	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778705947	7	109514089	AGATTTGCTCAC	A	580	PASS	-	-	-	-	-	Del	-	D	109514089	109514101	11	120	1076.06	-	-	1	1	1	-	-	./.	0	0	0	0	20	25	20	25	0	0	./.	11	9	11	9	32	32	32	32	11	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778706178	7	110218729	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	110218729	110218736	1	12	266.004	-	-	6	1	1	-	-	./.	0	0	0	0	28	22	29	22	0	0	./.	3	2	3	4	35	40	35	40	3	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778707767	7	115354157	CT	C	900	PASS	-	-	-	-	-	Del	-	D	115354157	115354162	1	70	806.44	-	-	4	1	1	-	-	./.	0	0	0	0	18	29	18	29	0	0	./.	6	9	9	16	26	39	26	39	9	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778714677	7	134473869	G	GAATTGTATC	406	PASS	CALD1	CCDS5836.1	r.?	-	-	Ins	intronic	I	134473869	134473880	9	60	677.38	-	-	1	1	1	CALD1|CCDS5836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CALD1|CCDS5836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	32	19	32	0	0	./.	5	9	5	8	25	38	25	38	5	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778715142	7	135519600	CAAGGA	C	836	PASS	-	-	-	-	-	Del	-	D	135519600	135519606	5	77	857.233	-	-	1	1	1	-	-	./.	0	0	0	0	20	21	20	21	0	0	./.	6	10	6	12	17	22	17	22	6	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778722560	7	153716656	CATTCTTTCTCCAGAGATGTCTT	C	250	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	153716656	153716682	22	49	645.634	-	-	1	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	6	6	4	6	7	15	9	15	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778722869	7	154614298	CTT	C	480	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154614298	154614302	2	24	429.218	-	-	3	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	5	3	5	3	19	22	19	22	5	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778723319	7	155556478	CA	C	540	PASS	RBM33	CCDS5941.2	r.?	-	-	Del	intronic	D	155556478	155556481	1	30	484.225	-	-	2	1	1	RBM33|CCDS5941.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM33|CCDS5941.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	19	12	19	0	0	./.	4	5	5	5	26	23	26	23	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778724914	8	585764	CGT	C	269	PASS	-	-	-	-	-	Del	-	D	585764	585779	2	10	267.474	-	-	7	1	1	-	-	./.	0	0	0	0	20	31	20	31	0	0	./.	1	4	2	4	66	40	66	40	2	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778726485	8	3754266	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	3754266	3754275	1	16	318.199	-	-	8	1	1	-	-	./.	0	0	0	0	13	22	14	22	0	0	./.	3	3	5	5	44	37	46	38	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778726770	8	4241518	CA	C	1049	PASS	-	-	-	-	-	Del	-	D	4241518	4241521	1	96	964.833	-	-	2	1	1	-	-	./.	0	0	0	0	30	18	30	18	0	0	./.	7	11	10	15	42	36	43	36	10	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778728009	8	6539342	CT	C	449	PASS	-	-	-	-	-	Del	-	D	6539342	6539345	1	21	429.885	-	-	2	1	1	-	-	./.	0	0	0	0	26	14	26	14	0	0	./.	6	2	7	2	56	41	56	41	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778734397	8	19318528	AT	A	895	PASS	CSGALNACT1	CCDS6010.1	r.?	-	-	Del	intronic	D	19318528	19318532	1	72	803.024	-	-	3	1	1	CSGALNACT1|CCDS6010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSGALNACT1|CCDS6010.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	7	8	9	10	44	50	44	50	9	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778734737	8	20069877	ATTACTTAGG	A	435	PASS	ATP6V1B2	CCDS6014.1	r.?	-	-	Del	intronic	D	20069877	20069889	9	70	805.432	-	-	1	1	1	ATP6V1B2|CCDS6014.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP6V1B2|CCDS6014.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	22	15	22	0	0	./.	6	9	7	11	43	51	43	51	7	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778736500	8	23725522	AT	A	300	PASS	-	-	-	-	-	Del	-	D	23725522	23725532	1	12	268.678	-	-	9	1	1	-	-	./.	0	0	0	0	16	34	16	34	0	0	./.	3	2	3	2	55	40	55	40	4	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778741052	8	32004252	T	TA	420	PASS	NRG1	CCDS47836.1	r.?	-	-	Ins	intronic	I	32004252	32004260	1	18	371.935	-	-	7	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	21	15	21	0	0	./.	2	5	5	13	40	57	40	57	5	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778742306	8	34737346	T	TC	660	PASS	-	-	-	-	-	Ins	-	I	34737346	34737347	1	42	584.469	-	-	0	1	1	-	-	./.	0	0	0	0	17	27	17	27	0	0	./.	6	5	7	8	26	42	26	42	7	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778743307	8	37522941	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	37522941	37522959	2	10	266.872	-	-	8	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	4	1	5	1	53	36	53	36	5	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778746416	8	42883500	T	TA	300	PASS	HOOK3	CCDS6139.1	r.12258_12259insa	c.?	p.?	Ins	3'UTR variant	I	42883500	42883510	1	12	265.668	-	-	9	1	1	HOOK3|CCDS6139.1|r.12258_12259insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	HOOK3|CCDS6139.1|r.12258_12259insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	16	21	17	22	0	0	./.	2	3	2	3	46	49	46	50	2	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778748229	8	50155163	AT	A	360	PASS	-	-	-	-	-	Del	-	D	50155163	50155172	1	16	322.414	-	-	8	1	1	-	-	./.	0	0	0	0	21	26	21	26	0	0	./.	3	3	3	5	54	50	54	50	3	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778749006	8	51922505	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	51922505	51922515	1	10	258.443	-	-	9	1	1	-	-	./.	0	0	0	0	31	29	31	29	0	0	./.	1	4	2	4	48	71	48	71	2	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778752582	8	58561837	GGT	G	420	PASS	-	-	-	-	-	Del	-	D	58561837	58561855	2	14	374.945	-	-	8	1	-	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	1	6	2	6	42	83	42	83	2	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778753637	8	61198811	C	CA	720	PASS	CA8	CCDS6174.1	r.?	-	-	Ins	upstream	I	61198811	61198818	1	48	633.388	-	-	6	1	1	CA8|CCDS6174.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CA8|CCDS6174.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	22	17	22	17	0	0	./.	5	7	7	7	46	53	46	54	7	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778754031	8	61848642	CGTAATCACATGAGCCCATTCCTTATAGTAAACCTCTCTTTCTCTATATATCTATATCTACATCTGTATCTATCCTATTGTTTCTATTTCTCTGCGAACCCAGTCTAATACAGCTACTTATCTTCTGATCTTCCTCCTTTAGAAAACGAGCCCCTTTTCCTTTTGGAAACTTCCCCTGCCTTACT	C	261	PASS	-	-	-	-	-	Del	-	D	61848642	61848828	184	28	483.018	-	-	1	1	1	-	-	./.	0	0	0	0	23	33	23	33	0	0	./.	3	6	0	0	33	45	36	51	3	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778755634	8	65497734	TGAGAA	T	298	PASS	BHLHE22	CCDS6179.1	r.?	-	-	Del	downstream	D	65497734	65497740	5	16	321.812	-	-	1	1	1	BHLHE22|CCDS6179.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	BHLHE22|CCDS6179.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	32	9	32	0	0	./.	3	3	4	3	43	62	43	62	4	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778758054	8	70034487	CA	C	1229	PASS	-	-	-	-	-	Del	-	D	70034487	70034490	1	120	1128.45	-	-	2	1	1	-	-	./.	0	0	0	0	39	26	39	26	0	0	./.	7	14	7	15	58	59	58	59	7	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778759809	8	73607785	T	TA	600	PASS	KCNB2	CCDS6209.1	r.?	-	-	Ins	intronic	I	73607785	73607794	1	32	531.335	-	-	8	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	19	25	19	0	0	./.	3	7	4	8	62	59	64	59	4	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778761623	8	76951824	CT	C	1260	PASS	-	-	-	-	-	Del	-	D	76951824	76951826	1	130	1124.84	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	9	12	14	17	68	68	68	68	14	17	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778763154	8	80313566	CA	C	360	PASS	-	-	-	-	-	Del	-	D	80313566	80313576	1	15	301.341	-	-	9	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	4	2	4	2	39	52	39	52	4	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778764429	8	82886495	ACTG	A	372	PASS	-	-	-	-	-	Del	-	D	82886495	82886500	3	24	429.283	-	-	1	1	1	-	-	./.	0	0	0	0	27	16	27	16	0	0	./.	5	3	6	4	58	32	58	32	6	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778764694	8	83417978	TA	T	537	PASS	-	-	-	-	-	Del	-	D	83417978	83417980	1	30	476.998	-	-	1	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	4	5	18	15	55	54	55	54	18	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778764933	8	84014551	T	TA	780	PASS	-	-	-	-	-	Ins	-	I	84014551	84014552	1	50	690.736	-	-	0	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	4	9	11	12	52	46	52	46	11	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778764976	8	84122828	AGGT	A	598	PASS	-	-	-	-	-	Del	-	D	84122828	84122835	3	36	589.887	-	-	2	1	1	-	-	./.	0	0	0	0	29	17	29	17	0	0	./.	8	3	11	9	53	46	53	46	11	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778765655	8	85683451	TTC	T	300	PASS	RALYL	ENST00000399361	r.?	-	-	Del	intronic	D	85683451	85683467	2	6	268.678	-	-	7	1	1	RALYL|ENST00000399361|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RALYL|ENST00000399361|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	31	19	31	0	0	./.	0	5	1	7	43	75	43	75	1	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778766767	8	88210995	TTTACAGAA	T	580	PASS	-	-	-	-	-	Del	-	D	88210995	88211007	8	120	1074.71	-	-	1	1	1	-	-	./.	0	0	0	0	24	25	24	25	0	0	./.	9	11	11	13	59	54	59	54	11	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778766965	8	88661114	AGGCAAACAGGGTCT	A	682	PASS	-	-	-	-	-	Del	-	D	88661114	88661131	14	169	1289.65	-	-	1	1	1	-	-	./.	0	0	0	0	26	29	26	29	0	0	./.	12	12	12	12	61	50	61	50	12	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778767182	8	89168837	C	CA	269	PASS	MMP16	CCDS6246.1	r.?	-	-	Ins	intronic	I	89168837	89168846	1	12	258.443	-	-	8	1	1	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	34	31	35	0	0	./.	2	3	4	6	54	65	54	66	4	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778767653	8	90218924	C	CA	509	PASS	-	-	-	-	-	Ins	-	I	90218924	90218932	1	30	477.6	-	-	7	1	1	-	-	./.	0	0	0	0	29	13	29	13	0	0	./.	4	5	6	6	58	60	58	60	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778767955	8	90974632	C	CT	960	PASS	NBN	CCDS6249.1	r.?	-	-	Ins	intronic	I	90974632	90974639	1	77	850.137	-	-	6	1	1	NBN|CCDS6249.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NBN|CCDS6249.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	30	26	30	0	0	./.	10	6	11	6	69	47	69	47	11	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778768285	8	91770870	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	91770870	91770888	2	10	268.678	-	-	8	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	1	4	1	4	40	47	40	47	1	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778769834	8	95275150	CA	C	1020	PASS	GEM	CCDS6261.1	r.?	-	-	Del	upstream	D	95275150	95275152	1	88	912.903	-	-	1	1	1	GEM|CCDS6261.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	GEM|CCDS6261.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	18	17	18	0	0	./.	7	10	11	12	46	59	46	59	11	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778769852	8	95331330	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	95331330	95331348	2	12	322.414	-	-	8	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	1	6	2	65	38	65	38	6	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778770596	8	96159499	ACCCTGCAT	A	568	PASS	PLEKHF2	CCDS6267.1	r.?	-	-	Del	intronic	D	96159499	96159508	8	121	1074.11	-	-	1	1	1	PLEKHF2|CCDS6267.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLEKHF2|CCDS6267.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	10	10	10	11	52	38	52	38	10	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778772966	8	101059302	CA	C	960	PASS	RGS22	CCDS43758.1	r.?	-	-	Del	intronic	D	101059302	101059307	1	77	859.77	-	-	4	1	1	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS22|CCDS43758.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	6	10	7	16	54	60	54	60	7	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778773140	8	101404935	A	AT	1140	PASS	-	-	-	-	-	Ins	-	I	101404935	101404938	1	90	1005.92	-	-	2	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	5	14	9	16	45	60	45	60	9	16	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778773965	8	102937030	CTTG	C	776	PASS	NCALD	CCDS6292.1	r.?	-	-	Del	intronic	D	102937030	102937038	3	70	804.228	-	-	2	1	1	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	22	23	22	0	0	./.	6	9	10	14	62	47	62	47	10	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778775102	8	105089456	GT	G	1196	PASS	RIMS2	ENST00000507740	r.?	-	-	Del	intronic	D	105089456	105089458	1	144	1179.77	-	-	1	1	-	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	25	14	25	0	0	./.	11	11	16	14	47	50	47	50	16	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778775467	8	105985862	AT	A	780	PASS	-	-	-	-	-	Del	-	D	105985862	105985864	1	44	698.563	-	-	1	1	1	-	-	./.	0	0	0	0	27	22	27	22	0	0	./.	3	10	14	12	43	77	43	77	14	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778776266	8	107845860	TG	T	1140	PASS	-	-	-	-	-	Del	-	D	107845860	107845864	1	108	1019.77	-	-	3	1	1	-	-	./.	0	0	0	0	27	16	27	16	0	0	./.	11	8	17	10	63	46	63	46	17	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778776416	8	108128787	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	108128787	108128806	2	10	267.474	-	-	9	1	-	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	1	4	2	4	60	54	60	54	2	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778776576	8	108451652	TTC	T	1080	PASS	ANGPT1	CCDS6306.1	r.?	-	-	Del	intronic	D	108451652	108451655	2	84	967.241	-	-	1	1	1	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	13	5	15	7	56	44	56	44	15	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778777007	8	109266894	GTA	G	1200	PASS	-	-	-	-	-	Del	-	D	109266894	109266897	2	117	1074.71	-	-	1	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	8	12	9	13	52	55	52	55	9	13	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778777105	8	109456987	TATTTATACCTG	T	522	PASS	TTC35	CCDS6309.1	r.?	-	-	Del	intronic	D	109456987	109457000	11	99	967.241	-	-	1	1	1	TTC35|CCDS6309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC35|CCDS6309.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	19	27	19	0	0	./.	10	8	10	8	54	45	54	45	10	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778778463	8	112784716	GT	G	780	PASS	-	-	-	-	-	Del	-	D	112784716	112784721	1	56	696.155	-	-	4	1	-	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	6	7	8	9	55	46	55	46	8	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778779493	8	115058638	AG	A	538	PASS	-	-	-	-	-	Del	-	D	115058638	115058641	1	96	961.22	-	-	2	1	1	-	-	./.	0	0	0	0	19	24	19	24	0	0	./.	7	11	8	14	35	65	35	65	8	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778779899	8	116298328	CGTAT	C	476	PASS	-	-	-	-	-	Del	-	D	116298328	116298335	4	35	536.754	-	-	1	1	1	-	-	./.	0	0	0	0	21	20	21	20	0	0	./.	4	6	4	7	45	44	45	44	4	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778781674	8	120401685	TCACGGTTGATGG	T	522	PASS	-	-	-	-	-	Del	-	D	120401685	120401700	12	91	967.241	-	-	1	1	1	-	-	./.	0	0	0	0	27	26	27	26	0	0	./.	6	12	7	14	54	42	54	42	7	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778782222	8	121188175	ACCTCTTATACTCC	A	522	PASS	COL14A1	CCDS34938.1	r.?	-	-	Del	intronic	D	121188175	121188190	13	99	967.241	-	-	1	1	1	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	10	8	11	9	56	51	56	51	11	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778782226	8	121191958	C	CA	540	PASS	COL14A1	CCDS34938.1	r.?	-	-	Ins	intronic	I	121191958	121191967	1	30	478.202	-	-	8	1	1	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL14A1|CCDS34938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	37	19	37	19	0	0	./.	5	4	9	6	62	62	62	63	9	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778782380	8	121523154	A	AG	420	PASS	MTBP	CCDS6333.1	r.?	-	-	Ins	intronic	I	121523154	121523155	1	20	368.924	-	-	0	1	1	MTBP|CCDS6333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTBP|CCDS6333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	4	3	7	5	43	70	44	70	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778784329	8	125126872	CT	C	540	PASS	FER1L6	CCDS43767.1	r.?	-	-	Del	intronic	D	125126872	125126876	1	28	483.62	-	-	3	1	1	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	21	6	21	0	0	./.	3	6	3	8	10	64	10	64	3	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778784403	8	125284473	A	AC	1260	PASS	-	-	-	-	-	Ins	-	I	125284473	125284477	1	120	1115.2	-	-	3	1	1	-	-	./.	0	0	0	0	24	19	24	20	0	0	./.	14	7	16	7	60	59	61	59	16	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778786493	8	128947225	C	CT	360	PASS	PVT1	CCDS3617.1	r.?	-	-	Ins	intronic	I	128947225	128947235	1	16	318.801	-	-	9	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	3	3	4	4	68	57	70	57	4	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778786780	8	129569607	TC	T	360	PASS	-	-	-	-	-	Del	-	D	129569607	129569609	1	15	322.414	-	-	1	1	1	-	-	./.	0	0	0	0	18	20	18	20	0	0	./.	2	4	2	7	59	57	59	57	2	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778788245	8	132518051	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	132518051	132518069	2	10	267.474	-	-	8	1	-	-	-	./.	0	0	0	0	27	14	27	14	0	0	./.	1	4	1	4	52	34	52	34	1	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778788725	8	133725733	GATGGTGCT	G	290	PASS	TMEM71	CCDS6366.1	r.?	-	-	Del	intronic	D	133725733	133725744	8	36	537.356	-	-	1	1	1	TMEM71|CCDS6366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM71|CCDS6366.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	5	5	7	5	52	39	52	39	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778790022	8	136685977	TTC	T	1049	PASS	-	-	-	-	-	Del	-	D	136685977	136685982	2	99	967.241	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	8	10	8	12	62	64	62	64	8	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778791126	8	138870627	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	138870627	138870642	2	12	268.678	-	-	7	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	3	3	3	45	66	45	66	3	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778791277	8	139122462	TCAG	T	538	PASS	-	-	-	-	-	Del	-	D	139122462	139122469	3	35	537.356	-	-	2	1	1	-	-	./.	0	0	0	0	25	20	25	20	0	0	./.	4	6	4	8	45	62	45	62	4	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778792334	8	141405120	TG	T	1080	PASS	TRAPPC9	CCDS34946.1	r.?	-	-	Del	intronic	D	141405120	141405125	1	100	966.037	-	-	4	1	1	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAPPC9|CCDS34946.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	10	29	10	0	0	./.	9	9	12	14	50	50	50	50	12	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778794360	8	145666977	G	GA	360	PASS	NFKBIL2	CCDS34968.2	r.?	-	-	Ins	intronic	I	145666977	145666987	1	15	318.199	-	-	9	1	1	NFKBIL2|CCDS34968.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFKBIL2|CCDS34968.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	25	22	25	0	0	./.	4	2	5	2	48	50	48	50	5	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778796869	9	6503638	TTGTTTCCTAGTGTTTTTTTTTAAGCTCCTAAAGACAAATATTCAAGTTTTATAACAGCAGAAGATTGAATAGATAATACATGTTCATACTTTGGAATACTGTGCAAAACAGCTTTTTGAAAAAAGGCAGTCAGTATGTAATGACCTTGAGACACGTTGCCCATGATTTTTTTATTTTTTAAGTGAAAAATAGTTTGTCCCTGGAATGTGACATTTAGGGGGACATTGACTTTTTAACATCATATATTGACTTTGCAACTTTTCCTACCCAATACTC	T	348	PASS	UHRF2	CCDS6469.1	r.?	-	-	Del	intronic	D	6503638	6503917	276	48	648.435	-	-	1	1	1	UHRF2|CCDS6469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UHRF2|CCDS6469.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	7	5	0	0	10	11	17	16	7	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778799472	9	14050079	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	14050079	14050087	1	25	427.473	-	-	7	1	1	-	-	./.	0	0	0	0	26	21	26	21	0	0	./.	4	4	7	7	26	24	27	25	7	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778814432	9	79592960	AC	A	420	PASS	-	-	-	-	-	Del	-	D	79592960	79592968	1	20	377.05	-	-	7	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	4	3	6	6	16	18	16	18	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778817979	9	91029315	ATGCCCTGTCCCTC	A	261	PASS	SPIN1	CCDS43843.1	r.?	-	-	Del	intronic	D	91029315	91029330	13	30	486.326	-	-	1	1	1	SPIN1|CCDS43843.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SPIN1|CCDS43843.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	18	15	18	0	0	./.	4	5	3	5	17	23	18	23	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778819037	9	94765726	GCGCTA	G	416	PASS	-	-	-	-	-	Del	-	D	94765726	94765732	5	28	482.112	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	6	3	6	3	28	16	28	16	6	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778822619	9	106533783	CT	C	300	PASS	-	-	-	-	-	Del	-	D	106533783	106533791	1	12	270.181	-	-	7	1	1	-	-	./.	0	0	0	0	13	22	13	22	0	0	./.	2	3	3	5	15	18	15	18	3	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778826185	9	117099483	CGAGCTGGATG	C	319	PASS	AKNA	CCDS6805.1	r.4323_4332delCAUCCAGCUC	c.4161_4170delCATCCAGCTC	p.I1388fs*5	Del	frameshift	D	117099483	117099497	10	30	590.786	-	-	1	1	1	AKNA|CCDS6805.1|r.4323_4332delCAUCCAGCUC|c.4161_4170delCATCCAGCTC|p.I1388fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	AKNA|CCDS6805.1|r.4323_4332delCAUCCAGCUC|c.4161_4170delCATCCAGCTC|p.I1388fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	19	20	19	20	0	0	./.	9	2	9	3	22	16	22	16	9	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778827684	9	121686829	AG	A	420	PASS	-	-	-	-	-	Del	-	D	121686829	121686832	1	20	378.254	-	-	2	1	1	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	3	4	4	5	19	20	19	20	4	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778828277	9	123703034	TCTGAAAGC	T	261	PASS	-	-	-	-	-	Del	-	D	123703034	123703043	8	28	485.724	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	6	3	7	4	28	14	28	14	7	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778835988	X	5928035	AATGTATCCCACGTCCAGTT	A	435	PASS	NLGN4X	CCDS14126.1	r.?	-	-	Del	intronic	D	5928035	5928057	19	70	809.646	-	-	1	1	1	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NLGN4X|CCDS14126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	6	9	6	8	37	24	37	25	6	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778836217	X	6617290	TAGAG	T	689	PASS	-	-	-	-	-	Del	-	D	6617290	6617296	4	49	647.716	-	-	2	1	-	-	-	./.	0	0	0	0	21	18	21	18	0	0	./.	6	6	11	9	40	20	40	20	11	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778836449	X	7316173	AATTCCAAT	A	609	PASS	-	-	-	-	-	Del	-	D	7316173	7316182	8	130	1133.5	-	-	1	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	12	9	12	12	29	37	29	37	12	12	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778836714	X	8277403	TCATTTGATG	T	435	PASS	ENSG00000227978	ENST00000418307	r.?	-	-	Del	intronic	D	8277403	8277413	9	72	809.044	-	-	1	1	1	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000227978|ENST00000418307|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	7	8	10	11	33	29	33	29	10	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778838734	X	14407738	CA	C	960	PASS	-	-	-	-	-	Del	-	D	14407738	14407746	1	80	863.02	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	7	9	8	14	21	34	21	34	8	14	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778839353	X	16141285	G	GA	600	PASS	GRPR	CCDS14174.1	r.?	-	-	Ins	upstream	I	16141285	16141292	1	27	533.141	-	-	6	1	1	GRPR|CCDS14174.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	GRPR|CCDS14174.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	27	26	27	26	0	0	./.	8	2	9	3	46	38	48	39	9	3	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778842947	X	25706778	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	25706778	25706787	1	16	320.246	-	-	8	1	1	-	-	./.	0	0	0	0	31	33	31	33	0	0	./.	3	3	5	5	27	33	27	33	5	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778845241	X	32547496	CTTTTTTTTTTTTTTTTTTTTTTTTTT	C	261	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32547496	32547534	26	24	481.573	-	-	1	1	-	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	18	5	18	0	0	./.	7	2	4	2	14	23	17	23	7	2	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778846865	X	38628042	ATTACTTTTTTACAGCCACTTTGTCCTGGATATTCTTCTTATTATTCTT	A	348	PASS	-	-	-	-	-	Del	-	D	38628042	38628094	48	49	647.114	-	-	1	1	1	-	-	./.	0	0	0	0	15	23	15	23	0	0	./.	6	6	1	2	13	16	18	20	6	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778854566	X	66435935	CTGTTTTGAGATATGTCCCATCA	C	267	PASS	-	-	-	-	-	Del	-	D	66435935	66435958	22	56	701.693	-	-	1	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	6	7	1	5	21	22	26	24	6	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778856293	X	71559916	C	CT	1260	PASS	HDAC8	CCDS14420.1	r.?	-	-	Ins	intronic	I	71559916	71559918	1	112	1120.26	-	-	1	1	1	HDAC8|CCDS14420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HDAC8|CCDS14420.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	19	17	0	0	./.	15	6	21	7	45	36	45	36	21	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778859460	X	83086393	G	GA	840	PASS	-	-	-	-	-	Ins	-	I	83086393	83086401	1	63	746.638	-	-	7	1	1	-	-	./.	0	0	0	0	13	28	13	29	0	0	./.	8	6	8	9	32	41	32	41	8	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778859866	X	84325490	CTTACCAAATAATG	C	464	PASS	APOOL	CCDS48138.1	r.?	-	-	Del	intronic	D	84325490	84325506	13	80	863.622	-	-	1	1	1	APOOL|CCDS48138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APOOL|CCDS48138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	29	19	29	0	0	./.	9	7	10	8	31	30	31	30	10	8	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778860002	X	84782954	TAAGGCGCA	T	580	PASS	-	-	-	-	-	Del	-	D	84782954	84782964	8	117	1078.93	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	12	8	14	9	36	27	36	27	14	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778860868	X	87446088	CAT	C	720	PASS	-	-	-	-	-	Del	-	D	87446088	87446091	2	45	647.716	-	-	1	1	1	-	-	./.	0	0	0	0	25	24	25	24	0	0	./.	8	4	14	6	35	24	35	24	14	6	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778861713	X	90160650	TG	T	595	PASS	-	-	-	-	-	Del	-	D	90160650	90160652	1	88	917.598	-	-	1	1	1	-	-	./.	0	0	0	0	28	12	28	12	0	0	./.	7	10	16	15	38	36	38	36	16	15	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778864842	X	100026699	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	100026699	100026709	1	25	426.392	-	-	9	1	1	-	-	./.	0	0	0	0	16	16	16	17	0	0	./.	4	4	8	11	31	30	31	30	8	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778868853	X	115195906	A	AT	250	PASS	-	-	-	-	-	Ins	-	I	115195906	115195913	1	25	426.392	-	-	6	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	4	4	6	5	28	44	28	45	6	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778869191	X	116272158	TCCA	T	716	PASS	-	-	-	-	-	Del	-	D	116272158	116272162	3	63	755.669	-	-	1	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	8	6	13	9	28	17	28	17	13	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778870831	X	121196352	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	121196352	121196362	1	10	266.872	-	-	9	1	1	-	-	./.	0	0	0	0	25	24	25	24	0	0	./.	4	1	5	1	41	29	41	29	5	1	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778870853	X	121269491	AG	A	1140	PASS	-	-	-	-	-	Del	-	D	121269491	121269493	1	108	1021.94	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	11	8	11	10	25	26	25	26	11	10	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778871120	X	122295536	CATT	C	898	PASS	-	-	-	-	-	Del	-	D	122295536	122295546	3	72	863.622	-	-	3	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	5	11	6	11	27	21	27	21	6	11	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778873514	X	131560518	A	AT	660	PASS	MBNL3	CCDS14633.1	r.?	-	-	Ins	intronic	I	131560518	131560527	1	40	586.515	-	-	8	1	1	MBNL3|CCDS14633.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MBNL3|CCDS14633.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	4	7	6	9	24	36	25	37	6	9	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778873713	X	132395188	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	132395188	132395197	1	44	691.458	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	20	0	0	./.	10	3	12	4	29	17	29	18	12	4	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778875351	X	138330320	ACAAATACATGTATG	A	348	PASS	-	-	-	-	-	Del	-	D	138330320	138330339	14	48	647.114	-	-	1	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	5	7	5	7	16	25	16	25	5	7	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778877127	X	144800540	AATTTTGCC	A	493	PASS	-	-	-	-	-	Del	-	D	144800540	144800550	8	78	915.792	-	-	1	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	12	5	13	5	41	19	41	19	13	5	1	1	1	1	1	1	1	1
2823477	PD20404a	PD20404b	2778877823	X	147153222	GA	G	360	PASS	-	-	-	-	-	Del	-	D	147153222	147153229	1	15	323.858	-	-	6	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	4	2	7	2	25	22	25	22	7	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773497184	1	63695991	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	63695991	63695993	1	12	319.033	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	1	5	3	7	10	22	10	23	3	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773501680	1	78755681	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	78755681	78755691	1	10	259.84	-	-	9	1	1	-	-	./.	0	0	0	0	25	21	25	21	0	0	./.	4	1	4	1	28	15	28	15	4	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773538521	1	214345486	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	214345486	214345494	1	42	584.893	-	-	7	1	1	-	-	./.	0	0	0	0	27	16	27	16	0	0	./.	6	5	6	7	19	17	20	17	6	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773542999	1	228237495	C	CT	300	PASS	WNT3A	CCDS1564.1	r.?	-	-	Ins	intronic	I	228237495	228237504	1	6	264.656	-	-	8	1	1	WNT3A|CCDS1564.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WNT3A|CCDS1564.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	5	0	7	1	30	23	30	23	7	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773548454	1	243228764	C	CCATA	252	PASS	-	-	-	-	-	Ins	-	I	243228764	243228776	4	28	462.293	-	-	2	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	3	6	3	7	11	21	11	21	3	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773564807	10	37550555	GTGTT	G	360	PASS	-	-	-	-	-	Del	-	D	37550555	37550562	4	15	323.654	-	-	1	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	4	2	6	3	26	13	26	13	6	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773569214	10	52969367	A	AT	360	PASS	PRKG1	CCDS7244.1	r.?	-	-	Ins	intronic	I	52969367	52969375	1	16	320.042	-	-	7	1	1	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKG1|CCDS7244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	17	15	0	0	./.	3	3	6	8	27	23	27	23	6	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773571355	10	58853599	GA	G	300	PASS	-	-	-	-	-	Del	-	D	58853599	58853605	1	12	268.508	-	-	5	1	1	-	-	./.	0	0	0	0	10	21	10	21	0	0	./.	3	2	5	3	17	19	17	19	5	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773574317	10	67572891	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	67572891	67572893	1	15	320.042	-	-	1	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	2	4	3	6	21	23	21	23	3	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773581450	10	89839612	CCTT	C	300	PASS	-	-	-	-	-	Del	-	D	89839612	89839616	3	12	258.875	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	6	3	26	17	26	17	6	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773623111	11	84551186	G	GA	307	PASS	DLG2	CCDS41696.1	r.?	-	-	Ins	intronic	I	84551186	84551193	1	12	316.517	-	-	6	1	1	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	1	5	4	5	26	24	26	26	4	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773626054	11	95074977	GT	G	420	PASS	-	-	-	-	-	Del	-	D	95074977	95074980	1	18	377.799	-	-	2	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	2	5	2	6	9	24	9	24	2	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773631980	11	114231522	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	114231522	114231531	1	20	374.187	-	-	8	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	4	3	5	4	17	15	17	16	5	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773663000	12	72017171	AGTCTT	A	480	PASS	ZFC3H1	CCDS41813.1	r.5067_5071delAAGAC	c.4708_4712delAAGAC	p.K1570fs*1	Del	frameshift	D	72017171	72017177	5	24	430.691	-	-	1	1	1	ZFC3H1|CCDS41813.1|r.5067_5071delAAGAC|c.4708_4712delAAGAC|p.K1570fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ZFC3H1|CCDS41813.1|r.5067_5071delAAGAC|c.4708_4712delAAGAC|p.K1570fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	26	14	26	14	0	0	./.	5	3	6	3	24	23	24	23	6	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773664858	12	77393753	AATT	A	807	PASS	-	-	-	-	-	Del	-	D	77393753	77393758	3	70	809.202	-	-	1	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	6	9	8	9	23	33	23	33	8	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773667133	12	85087930	AG	A	1020	PASS	-	-	-	-	-	Del	-	D	85087930	85087932	1	88	917.778	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	10	7	12	8	97	88	97	88	12	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773668935	12	88690389	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	88690389	88690407	2	12	269.935	-	-	8	1	-	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	2	3	2	3	48	49	48	49	2	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773669451	12	90103175	TGC	T	269	PASS	-	-	-	-	-	Del	-	D	90103175	90103193	2	12	261.506	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	2	3	3	4	50	64	50	64	3	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773669707	12	90689019	AT	A	360	PASS	-	-	-	-	-	Del	-	D	90689019	90689029	1	15	323.922	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	4	3	60	58	60	58	4	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773670488	12	92298096	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	92298096	92298104	1	24	422.865	-	-	7	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	5	3	6	6	74	103	75	104	6	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773671609	12	94607648	T	TG	480	PASS	PLXNC1	CCDS9049.1	r.?	-	-	Ins	intronic	I	94607648	94607649	1	24	415.038	-	-	0	1	1	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLXNC1|CCDS9049.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	3	5	4	47	39	47	43	5	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773674005	12	99571124	C	CT	600	PASS	ANKS1B	ENST00000329257	r.?	-	-	Ins	intronic	I	99571124	99571133	1	32	532.043	-	-	8	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	21	9	22	0	0	./.	3	7	5	9	32	30	32	32	5	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773674093	12	100045929	GAC	G	300	PASS	FAM71C	CCDS9072.1	r.?	-	-	Del	downstream	D	100045929	100045947	2	12	269.333	-	-	8	1	1	FAM71C|CCDS9072.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	2	33	20	33	20	3	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773694389	13	43271649	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	43271649	43271666	2	10	267.218	-	-	8	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	1	4	1	4	25	20	25	20	1	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773713592	13	101662518	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	101662518	101662525	1	10	267.82	-	-	6	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	4	1	4	1	22	13	23	13	4	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773713864	13	102436462	TG	T	509	PASS	FGF14	CCDS9500.1	r.?	-	-	Del	intronic	D	102436462	102436464	1	28	487.494	-	-	1	1	1	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGF14|CCDS9500.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	3	6	5	9	20	30	20	30	5	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773717310	13	112795365	GA	G	480	PASS	-	-	-	-	-	Del	-	D	112795365	112795367	1	21	433.328	-	-	1	1	1	-	-	./.	0	0	0	0	4	19	4	19	0	0	./.	2	6	3	7	8	23	8	23	3	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773722652	14	32353504	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	32353504	32353522	2	12	270.999	-	-	8	1	1	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	3	2	4	2	27	23	27	23	4	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773725488	14	40630044	AG	A	300	PASS	-	-	-	-	-	Del	-	D	40630044	40630046	1	12	270.999	-	-	1	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	3	2	3	3	17	20	17	20	3	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773732747	14	62620418	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	62620418	62620422	1	28	480.574	-	-	3	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	6	3	10	5	27	28	27	29	10	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773738806	14	80008313	G	GT	540	PASS	NRXN3	CCDS45145.1	r.?	-	-	Ins	intronic	I	80008313	80008315	1	30	482.38	-	-	1	1	1	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	8	9	0	0	./.	5	4	8	5	24	22	24	23	8	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773741480	14	88882998	CA	C	300	PASS	SPATA7	CCDS9883.1	r.?	-	-	Del	intronic	D	88882998	88883005	1	12	270.999	-	-	6	1	1	SPATA7|CCDS9883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPATA7|CCDS9883.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	3	5	23	27	23	27	3	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773755850	15	42149880	TG	T	300	PASS	MAPKBP1	CCDS45239.1	r.?	-	-	Del	intronic	D	42149880	42149883	1	10	271.213	-	-	2	1	1	MAPKBP1|CCDS45239.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	SPTBN5|ENST00000320955|r.8482delC|c.8254delC|p.H2752fs*59|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	9	16	9	16	0	0	./.	4	1	7	1	25	17	25	17	7	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773811584	17	19356842	CAGA	C	1229	PASS	-	-	-	-	-	Del	-	D	19356842	19356846	3	102	1136.05	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	16	8	23	23	43	23	43	8	23	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773835056	17	76651394	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	76651394	76651403	1	12	267.162	-	-	8	1	1	-	-	./.	0	0	0	0	20	19	20	19	0	0	./.	2	3	1	0	23	31	23	31	3	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773851494	18	49531917	AG	A	449	PASS	-	-	-	-	-	Del	-	D	49531917	49531919	1	21	428.676	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	6	2	8	8	16	26	16	26	8	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773860058	18	76004331	ACT	A	840	PASS	-	-	-	-	-	Del	-	D	76004331	76004340	2	63	757.859	-	-	4	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	8	6	9	7	26	28	26	28	9	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773860094	18	76097716	CT	C	300	PASS	-	-	-	-	-	Del	-	D	76097716	76097723	1	6	271.309	-	-	6	1	1	-	-	./.	0	0	0	0	14	23	14	23	0	0	./.	5	0	5	1	23	25	23	25	5	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773860958	19	707618	C	CT	360	PASS	PALM	CCDS32857.1	r.?	-	-	Ins	upstream	I	707618	707620	1	15	321.29	-	-	1	1	1	PALM|CCDS32857.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	PALM|CCDS32857.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	5	5	23	15	23	15	5	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773866485	19	13212674	GCTGACCCTAGACCCCCAAACA	G	290	PASS	NFIX	CCDS45996.1	r.?	-	-	Del	downstream	D	13212674	13212703	21	35	541.905	-	-	1	1	1	NFIX|CCDS45996.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LYL1|CCDS12292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	6	3	6	6	11	7	11	4	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773887196	2	10339918	A	AAC	329	PASS	C2orf48	CCDS1670.1	r.?	-	-	Ins	intronic	I	10339918	10339920	2	7	310.711	-	-	0	1	-	C2orf48|CCDS1670.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C2orf48|CCDS1670.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	14	15	0	0	./.	6	0	1	0	26	19	27	19	6	0	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773890183	2	20089928	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	20089928	20089930	1	10	265.949	-	-	1	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	5	1	24	10	24	10	5	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773901830	2	56390418	CT	C	281	PASS	-	-	-	-	-	Del	-	D	56390418	56390427	1	18	376.544	-	-	8	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	5	2	5	2	25	14	25	14	5	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773927625	2	143412286	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	143412286	143412296	1	24	424.315	-	-	9	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	5	3	6	4	23	18	23	18	6	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773933346	2	162716217	T	TC	360	PASS	SLC4A10	CCDS46438.1	r.?	-	-	Ins	intronic	I	162716217	162716222	1	12	319.139	-	-	4	1	1	SLC4A10|CCDS46438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC4A10|CCDS46438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	12	25	12	0	0	./.	5	1	12	2	37	22	37	22	12	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773934846	2	168903664	T	TA	269	PASS	STK39	CCDS42770.1	r.?	-	-	Ins	intronic	I	168903664	168903673	1	10	265.949	-	-	8	1	1	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	1	4	3	6	19	20	19	20	3	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773947241	2	207173103	G	GA	660	PASS	ZDBF2	CCDS46501.1	r.4237_4238insa	c.3851_3852insA	p.I1285fs*4	Ins	frameshift	I	207173103	207173106	1	36	583.283	-	-	2	1	1	ZDBF2|CCDS46501.1|r.4237_4238insa|c.3851_3852insA|p.I1285fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ZDBF2|CCDS46501.1|r.4237_4238insa|c.3851_3852insA|p.I1285fs*4|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	15	7	15	8	0	0	./.	8	3	10	6	22	15	22	15	10	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773954209	2	228513918	TATGG	T	389	PASS	-	-	-	-	-	Del	-	D	228513918	228513924	4	18	376.544	-	-	1	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	5	2	8	2	24	23	24	23	8	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773966008	20	23492580	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	23492580	23492586	1	28	483.39	-	-	5	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	6	3	7	3	24	7	24	7	7	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2773979750	20	60858206	C	CG	780	PASS	OSBPL2	CCDS13495.1	r.?	-	-	Ins	intronic	I	60858206	60858210	1	56	698.23	-	-	3	1	1	OSBPL2|CCDS13495.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OSBPL2|CCDS13495.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	7	6	13	9	32	38	33	39	13	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774002249	22	30252140	GTCC	G	300	PASS	-	-	-	-	-	Del	-	D	30252140	30252151	3	10	272.86	-	-	3	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	1	4	1	4	16	19	16	19	1	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774004111	22	34930075	CA	C	360	PASS	-	-	-	-	-	Del	-	D	34930075	34930085	1	15	327.432	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	2	4	3	18	14	18	14	4	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774020867	3	34648028	CCT	C	360	PASS	-	-	-	-	-	Del	-	D	34648028	34648046	2	12	322.761	-	-	8	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	5	1	5	18	26	18	26	1	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774021195	3	35712602	GGCTGCTTTCCTT	G	319	PASS	ENSG00000172995	CCDS2661.1	r.?	-	-	Del	intronic	D	35712602	35712616	12	36	589.822	-	-	1	1	1	ENSG00000172995|CCDS2661.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000172995|CCDS2661.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	8	3	8	3	27	20	27	20	8	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774027463	3	56609603	CAA	C	480	PASS	CCDC66	CCDS46852.1	r.?	-	-	Del	intronic	D	56609603	56609608	2	24	429.946	-	-	4	1	1	CCDC66|CCDS46852.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC66|CCDS46852.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	3	5	3	7	20	24	20	24	3	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774055363	3	149692550	CT	C	300	PASS	PFN2	CCDS3148.1	r.?	-	-	Del	upstream	D	149692550	149692560	1	12	269.469	-	-	9	1	1	PFN2|CCDS3148.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PFN2|ENST00000494827|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	3	2	4	4	18	19	18	19	4	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774056664	3	153708602	AAAC	A	480	PASS	-	-	-	-	-	Del	-	D	153708602	153708610	3	21	428.14	-	-	2	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	2	6	7	6	27	21	27	21	7	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774056678	3	153799499	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	153799499	153799501	1	15	319.751	-	-	1	1	1	-	-	./.	0	0	0	0	22	20	22	20	0	0	./.	2	4	3	5	10	14	10	14	3	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774067070	3	188236821	ATAGT	A	389	PASS	LPP	CCDS3291.1	r.?	-	-	Del	intronic	D	188236821	188236831	4	18	377.257	-	-	2	1	1	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPP|CCDS3291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	9	18	9	0	0	./.	2	5	3	7	20	23	20	23	3	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774080582	4	27968143	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	27968143	27968147	1	18	372.469	-	-	3	1	1	-	-	./.	0	0	0	0	19	13	19	13	0	0	./.	2	5	8	5	27	26	29	26	8	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774086722	4	43542474	C	CT	409	PASS	-	-	-	-	-	Ins	-	I	43542474	43542484	1	18	367.05	-	-	9	1	1	-	-	./.	0	0	0	0	17	20	18	21	0	0	./.	2	5	3	6	34	43	35	43	3	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774086818	4	43863008	CT	C	420	PASS	-	-	-	-	-	Del	-	D	43863008	43863013	1	20	376.683	-	-	4	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	4	3	10	9	32	20	32	20	10	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774088192	4	48376420	A	AT	869	PASS	SLAIN2	CCDS47051.1	r.?	-	-	Ins	intronic	I	48376420	48376429	1	72	788.514	-	-	8	1	1	SLAIN2|CCDS47051.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLAIN2|CCDS47051.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	8	7	11	7	31	31	31	31	11	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774090234	4	55146270	AATTGC	A	478	PASS	PDGFRA	CCDS3495.1	r.?	-	-	Del	intronic	D	55146270	55146276	5	28	482.501	-	-	1	1	1	PDGFRA|CCDS3495.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDGFRA|CCDS3495.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	6	3	9	8	20	17	20	17	9	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774097371	4	73967152	A	AG	720	PASS	ANKRD17	CCDS34004.1	r.?	-	-	Ins	intronic	I	73967152	73967159	1	40	636.711	-	-	6	1	1	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	19	0	0	./.	3	9	4	14	25	45	26	45	4	14	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774100373	4	83225302	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	83225302	83225312	1	10	459.02	-	-	9	1	1	-	-	./.	0	0	0	0	14	29	14	30	0	0	./.	0	9	1	11	17	50	17	50	1	11	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774101195	4	85000187	GATA	G	329	PASS	-	-	-	-	-	Del	-	D	85000187	85000196	3	15	322.871	-	-	2	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	5	5	21	31	21	31	5	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774103503	4	92194488	GTGTT	G	389	PASS	FAM190A	CCDS47099.1	r.?	-	-	Del	intronic	D	92194488	92194502	4	18	376.683	-	-	3	1	1	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47099.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	2	5	2	6	24	39	24	39	2	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774106251	4	100919857	AT	A	780	PASS	-	-	-	-	-	Del	-	D	100919857	100919867	1	50	699.554	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	9	4	10	7	30	25	30	25	10	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774113716	4	123777230	G	GA	600	PASS	FGF2	CCDS34059.1	r.?	-	-	Ins	intronic	I	123777230	123777240	1	27	532.098	-	-	9	1	1	FGF2|CCDS34059.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF2|CCDS34059.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	8	2	11	3	28	31	29	31	11	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774125905	4	160088521	C	CA	900	PASS	RAPGEF2	ENST00000505478	r.?	-	-	Ins	intronic	I	160088521	160088523	1	70	797.545	-	-	1	1	1	RAPGEF2|ENST00000505478|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAPGEF2|ENST00000505478|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	6	9	7	11	24	24	24	25	7	11	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774126376	4	161473027	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	161473027	161473033	1	16	425.678	-	-	5	1	1	-	-	./.	0	0	0	0	17	13	18	13	0	0	./.	1	7	2	9	25	37	26	38	2	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774128420	4	166386359	CATT	C	420	PASS	CPE	CCDS3810.1	r.?	-	-	Del	intronic	D	166386359	166386365	3	20	374.877	-	-	1	1	1	CPE|CCDS3810.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPE|CCDS3810.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	3	4	4	6	15	22	15	22	4	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774128613	4	166997399	A	AT	720	PASS	TLL1	CCDS3811.1	r.?	-	-	Ins	intronic	I	166997399	166997406	1	48	633.099	-	-	6	1	1	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TLL1|CCDS3811.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	7	5	8	10	25	33	25	33	8	10	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774129312	4	168737168	C	CA	697	PASS	-	-	-	-	-	Ins	-	I	168737168	168737175	1	45	638.518	-	-	6	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	4	8	6	7	18	19	18	20	6	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774131145	4	174285405	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	174285405	174285415	1	70	798.147	-	-	9	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	9	6	10	7	33	20	33	22	10	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774133956	4	181513163	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	181513163	181513173	1	8	371.867	-	-	9	1	-	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	7	0	10	6	33	23	33	23	10	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774145374	5	18821358	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	18821358	18821366	1	10	266.802	-	-	7	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	1	4	4	4	17	19	17	20	4	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774191670	5	180039952	A	AC	449	PASS	FLT4	CCDS4457.1	r.?	-	-	Ins	intronic	I	180039952	180039958	1	25	420.261	-	-	5	1	1	FLT4|CCDS4457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FLT4|CCDS4457.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	19	8	19	0	0	./.	4	4	7	4	19	22	19	24	7	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774192660	6	2337232	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	2337232	2337252	2	12	268.457	-	-	9	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	3	2	3	2	21	32	21	32	3	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774194703	6	7665464	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	7665464	7665473	1	10	266.049	-	-	8	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	1	4	3	26	20	26	20	4	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774201159	6	25110860	T	TTGTTA	598	PASS	CMAH	ENST00000436589	r.?	-	-	Ins	intronic	I	25110860	25110862	5	40	559.54	-	-	0	1	1	CMAH|ENST00000436589|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CMAH|ENST00000436589|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	7	4	7	4	26	26	26	26	7	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774207887	6	41808123	A	AG	300	PASS	USP49	CCDS4861.1	r.?	-	-	Ins	intronic	I	41808123	41808124	1	10	260.631	-	-	0	1	-	USP49|CCDS4861.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	USP49|CCDS4861.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	1	4	1	5	20	24	20	24	1	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774213954	6	57678924	GA	G	480	PASS	-	-	-	-	-	Del	-	D	57678924	57678928	1	21	431.458	-	-	3	1	1	-	-	./.	0	0	0	0	23	12	23	12	0	0	./.	6	2	7	5	21	12	21	12	7	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774221503	6	84566459	ACTT	A	389	PASS	CYB5R4	CCDS5000.2	r.?	-	-	Del	upstream	D	84566459	84566465	3	18	377.526	-	-	1	1	1	CYB5R4|CCDS5000.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RIPPLY2|CCDS34493.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	16	24	16	0	0	./.	5	2	6	2	18	25	18	25	6	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774224061	6	92711923	CAAAT	C	358	PASS	-	-	-	-	-	Del	-	D	92711923	92711929	4	20	377.526	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	4	3	5	21	15	21	15	3	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774224588	6	94620753	A	ATC	480	PASS	-	-	-	-	-	Ins	-	I	94620753	94620765	2	24	421.825	-	-	5	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	5	3	5	3	23	16	23	16	5	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774231258	6	115972077	AAC	A	269	PASS	-	-	-	-	-	Del	-	D	115972077	115972096	2	10	269.661	-	-	9	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	4	1	4	1	20	17	20	17	4	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774233963	6	125057888	G	GA	420	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Ins	intronic	I	125057888	125057895	1	20	373.312	-	-	6	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	3	4	3	4	16	20	16	20	3	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774235699	6	131552919	A	AT	300	PASS	AKAP7	CCDS5142.1	r.?	-	-	Ins	intronic	I	131552919	131552920	1	12	266.651	-	-	0	1	1	AKAP7|CCDS5142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AKAP7|CCDS5142.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	5	4	13	15	13	15	5	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774241733	6	152397194	AAAT	A	389	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152397194	152397203	3	18	377.526	-	-	2	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	2	5	5	6	29	18	29	18	5	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774242934	6	155502555	TGA	T	360	PASS	TIAM2	CCDS34558.1	r.?	-	-	Del	intronic	D	155502555	155502561	2	16	322.39	-	-	2	1	1	TIAM2|CCDS34558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TIAM2|CCDS34558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	23	14	23	0	0	./.	3	3	5	6	24	23	24	23	5	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774261978	7	41572967	TA	T	360	PASS	ENSG00000236089	ENST00000443116	r.?	-	-	Del	intronic	D	41572967	41572970	1	15	323.758	-	-	2	1	1	ENSG00000236089|ENST00000443116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000236089|ENST00000443116|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	2	4	2	10	23	30	23	30	2	10	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774262630	7	43602501	G	GA	360	PASS	HECW1	CCDS5469.2	r.6402_6403insa	c.?	p.?	Ins	3'UTR variant	I	43602501	43602511	1	16	320.146	-	-	9	1	1	HECW1|CCDS5469.2|r.6402_6403insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	HECW1|CCDS5469.2|r.6402_6403insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	14	21	14	21	0	0	./.	3	3	3	4	25	24	25	24	3	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774272533	7	71710956	G	GA	360	PASS	CALN1	CCDS47603.1	r.?	-	-	Ins	intronic	I	71710956	71710963	1	15	320.146	-	-	6	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	13	11	0	0	./.	2	4	4	5	16	20	16	20	4	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774291150	7	132787918	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	132787918	132787928	1	10	264.982	-	-	9	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	4	1	7	2	22	20	22	20	7	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774302025	8	5850124	AT	A	780	PASS	-	-	-	-	-	Del	-	D	5850124	5850129	1	50	701.303	-	-	4	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	9	4	12	4	31	23	31	23	12	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774302269	8	6366599	G	GA	300	PASS	MCPH1	CCDS43689.1	r.?	-	-	Ins	intronic	I	6366599	6366608	1	12	266.721	-	-	8	1	1	MCPH1|CCDS43689.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCPH1|CCDS43689.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	19	0	0	./.	2	3	3	3	16	18	16	19	3	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774307202	8	19652131	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	19652131	19652140	1	12	266.721	-	-	8	1	1	-	-	./.	0	0	0	0	16	14	16	16	0	0	./.	3	2	3	4	28	22	29	22	3	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774318785	8	62493167	G	GGCTGTGCT	290	PASS	ASPH	CCDS34898.1	r.?	-	-	Ins	intronic	I	62493167	62493176	8	35	491.299	-	-	1	1	1	ASPH|CCDS34898.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASPH|CCDS34898.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	4	6	4	5	18	25	18	26	4	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774322790	8	75788395	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	75788395	75788411	2	12	269.732	-	-	7	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	3	2	3	2	43	46	43	46	3	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774322824	8	75844431	T	TG	329	PASS	-	-	-	-	-	Ins	-	I	75844431	75844432	1	15	309.831	-	-	0	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	2	4	4	7	68	66	68	66	4	7	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774323307	8	76786231	A	ATTGTG	477	PASS	-	-	-	-	-	Ins	-	I	76786231	76786238	5	35	509.361	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	4	6	4	81	59	81	61	6	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774324083	8	79032091	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	79032091	79032099	1	12	266.721	-	-	7	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	3	2	4	5	29	32	29	32	4	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774326802	8	86381011	CCA	C	300	PASS	CA2	CCDS6239.1	r.?	-	-	Del	intronic	D	86381011	86381030	2	6	269.732	-	-	9	1	-	CA2|CCDS6239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA2|CCDS6239.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	0	5	0	5	28	28	28	28	0	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774326992	8	87194803	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	87194803	87194807	1	12	266.721	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	3	2	5	21	26	21	26	2	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774330834	8	98682210	A	AT	300	PASS	MTDH	CCDS6274.1	r.?	-	-	Ins	intronic	I	98682210	98682218	1	6	258.895	-	-	7	1	1	MTDH|CCDS6274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTDH|CCDS6274.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	0	5	2	8	37	29	38	29	2	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774333567	8	105069307	TC	T	389	PASS	RIMS2	ENST00000507740	r.?	-	-	Del	intronic	D	105069307	105069309	1	8	358.359	-	-	1	1	-	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	7	0	18	0	67	41	67	41	18	0	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774334009	8	106080818	CA	C	360	PASS	-	-	-	-	-	Del	-	D	106080818	106080828	1	12	323.678	-	-	9	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	1	5	1	6	35	38	35	38	1	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774334880	8	108143593	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	108143593	108143613	2	10	266.119	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	1	4	1	5	37	41	37	41	1	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774335611	8	109571531	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	109571531	109571538	1	18	373.41	-	-	6	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	2	5	3	6	88	65	88	65	3	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774335993	8	110297051	C	CA	420	PASS	NUDCD1	CCDS6312.1	r.?	-	-	Ins	intronic	I	110297051	110297056	1	20	372.808	-	-	4	1	1	NUDCD1|CCDS6312.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUDCD1|CCDS6312.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	18	25	18	0	0	./.	4	3	5	5	131	109	133	114	5	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774336192	8	110652580	C	CT	420	PASS	ENSG00000147642	CCDS47912.1	r.?	-	-	Ins	intronic	I	110652580	110652589	1	18	370.4	-	-	8	1	1	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	21	14	22	0	0	./.	2	5	3	6	74	97	74	98	3	6	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774336218	8	110701011	AG	A	540	PASS	ENSG00000147642	CCDS47912.1	r.?	-	-	Del	intronic	D	110701011	110701013	1	28	482.507	-	-	1	1	1	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000147642|CCDS47912.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	6	6	9	74	68	74	68	6	9	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774337614	8	113954366	G	GT	420	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113954366	113954376	1	20	371.604	-	-	9	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	4	3	4	4	60	66	60	66	4	4	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774340306	8	120493355	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	120493355	120493364	1	12	320.066	-	-	8	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	5	1	7	3	68	52	68	53	7	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774341753	8	123486228	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	123486228	123486244	2	12	322.474	-	-	7	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	1	5	1	31	34	31	34	5	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774342578	8	125046078	TTC	T	360	PASS	FER1L6	CCDS43767.1	r.?	-	-	Del	intronic	D	125046078	125046082	2	15	323.678	-	-	1	1	1	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	4	2	4	3	59	40	59	40	4	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774343106	8	126052985	TGTAA	T	358	PASS	KIAA0196	CCDS6355.1	r.?	-	-	Del	intronic	D	126052985	126052992	4	20	377.624	-	-	1	1	1	KIAA0196|CCDS6355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0196|CCDS6355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	4	3	4	5	49	30	49	30	5	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774343107	8	126053245	GA	G	360	PASS	KIAA0196	CCDS6355.1	r.?	-	-	Del	intronic	D	126053245	126053247	1	15	323.678	-	-	1	1	1	KIAA0196|CCDS6355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0196|CCDS6355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	2	5	2	58	36	58	36	5	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774343109	8	126054149	TAAA	T	778	PASS	KIAA0196	CCDS6355.1	r.?	-	-	Del	intronic	D	126054149	126054155	3	55	755.249	-	-	5	1	1	KIAA0196|CCDS6355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0196|CCDS6355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	4	10	6	11	30	40	30	40	6	11	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774367934	9	81844957	AG	A	269	PASS	-	-	-	-	-	Del	-	D	81844957	81844959	1	10	270.56	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	1	4	2	5	19	18	19	18	2	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774381139	9	124513419	GCTGCCCGGCTGCTGTGGACCTTTCCCC	G	300	PASS	DAB2IP	CCDS6833.2	r.?	-	-	Del	intronic	D	124513419	124513460	27	12	267.55	-	-	1	1	1	DAB2IP|CCDS6833.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DAB2IP|CCDS6833.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	0	0	16	21	19	21	3	2	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774382027	9	127356073	GCT	G	314	PASS	NR6A1	CCDS35137.1	r.?	-	-	Del	intronic	D	127356073	127356090	2	16	324.672	-	-	8	1	1	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NR6A1|CCDS35137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	12	5	12	0	0	./.	3	3	3	3	16	23	16	23	3	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774401474	X	70337842	A	ATAT	300	PASS	MED12	CCDS43970.1	r.?	-	-	Ins	upstream	I	70337842	70337868	3	10	261.622	-	-	8	1	-	MED12|CCDS43970.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	MED12|CCDS43970.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	11	20	11	20	0	0	./.	4	1	4	1	21	24	21	24	4	1	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774403562	X	79864331	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	79864331	79864338	1	10	267.643	-	-	6	1	1	-	-	./.	0	0	0	0	14	6	14	7	0	0	./.	1	4	3	5	22	17	22	17	3	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774404462	X	83966567	C	CT	276	PASS	-	-	-	-	-	Ins	-	I	83966567	83966575	1	12	267.041	-	-	7	1	1	-	-	./.	0	0	0	0	16	17	17	17	0	0	./.	2	3	4	3	18	27	18	27	4	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774408270	X	100385988	G	GT	300	PASS	CENPI	CCDS14479.1	r.?	-	-	Ins	intronic	I	100385988	100385998	1	12	267.643	-	-	9	1	1	CENPI|CCDS14479.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CENPI|CCDS14479.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	19	16	0	0	./.	3	2	3	5	25	28	25	28	3	5	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774408737	X	102436013	GT	G	360	PASS	ENSG00000226623	ENST00000416953	r.?	-	-	Del	intronic	D	102436013	102436017	1	12	324.784	-	-	3	1	1	ENSG00000226623|ENST00000416953|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000226623|ENST00000416953|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	23	25	23	0	0	./.	5	1	7	3	26	14	26	14	7	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774411810	X	116786632	TAA	T	420	PASS	-	-	-	-	-	Del	-	D	116786632	116786636	2	20	377.108	-	-	3	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	3	5	3	18	15	18	15	5	3	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774413225	X	122047589	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	122047589	122047594	1	14	372.894	-	-	4	1	1	-	-	./.	0	0	0	0	11	16	12	16	0	0	./.	1	6	1	8	18	24	18	24	1	8	1	1	1	1	1	1	1	1
2820385	PD20403a	PD20403b	2774414386	X	126666574	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	126666574	126666584	1	16	321.172	-	-	9	1	1	-	-	./.	0	0	0	0	26	17	26	17	0	0	./.	3	3	5	3	16	18	16	18	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749866929	1	12111775	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	12111775	12111776	1	24	422.988	-	-	0	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	3	5	3	9	31	24	31	24	3	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749869408	1	17871699	G	GTATT	358	PASS	ARHGEF10L	CCDS182.1	r.?	-	-	Ins	intronic	I	17871699	17871707	4	20	359.052	-	-	1	1	1	ARHGEF10L|CCDS182.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	AL390994.1|ENST00000509615|r.952_953insuauu|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	./.	0	0	0	0	6	15	6	15	0	0	./.	4	3	4	4	27	34	27	34	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749871135	1	22295830	C	CA	276	PASS	-	-	-	-	-	Ins	-	I	22295830	22295840	1	6	265.497	-	-	9	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	0	5	1	5	25	36	25	38	1	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749871438	1	22960481	G	GT	300	PASS	C1QA	CCDS226.1	r.?	-	-	Ins	upstream	I	22960481	22960491	1	12	264.895	-	-	9	1	1	C1QA|CCDS226.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C1QA|CCDS226.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	12	12	12	0	0	./.	3	2	4	2	42	41	42	41	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749874471	1	30223621	TA	T	300	PASS	-	-	-	-	-	Del	-	D	30223621	30223631	1	12	267.905	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	3	4	36	25	36	25	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749874949	1	31742230	TACCTG	T	745	PASS	SNRNP40	CCDS340.1	r.?	-	-	Del	intronic	D	31742230	31742236	5	72	805.521	-	-	1	1	1	SNRNP40|CCDS340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNRNP40|ENST00000373720|r.279_283delCAGGU|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	6	17	6	17	0	0	./.	7	8	9	10	31	21	31	21	9	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749875561	1	33440225	CCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCAGGCGGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGAGCCTGGCCGGGCAGGGGGCTGACCCCCCCTCCCCCCTCCCGGACGGGGCGGCTGGCTGGGCGGGGGGCTGACCCCCCACCTCTCTCCCGGACTGGGCGGCTGGCCGGGCGGGGGGCTGA	C	330	PASS	-	-	-	-	-	Del	-	D	33440225	33440503	271	14	375.308	-	-	1	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	6	1	0	0	19	24	25	25	6	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749876303	1	35931559	CACGTGGAACTGTAAGTCCATTAA	C	261	PASS	KIAA0319L	CCDS390.1	r.?	-	-	Del	intronic	D	35931559	35931585	23	18	482.71	-	-	1	1	1	KIAA0319L|CCDS390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0319L|CCDS390.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	1	8	2	8	23	41	23	41	2	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749880860	1	47974247	A	ACAT	267	PASS	-	-	-	-	-	Ins	-	I	47974247	47974250	3	15	310.769	-	-	0	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	4	3	23	34	24	34	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749880952	1	48357305	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	48357305	48357312	1	15	317.994	-	-	6	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	2	4	3	6	29	41	29	42	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749881515	1	50651969	AT	A	300	PASS	ELAVL4	CCDS44140.1	r.?	-	-	Del	intronic	D	50651969	50651979	1	6	264.293	-	-	9	1	1	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	0	5	1	5	48	31	48	31	1	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749883512	1	55876085	GAAAGCTACTATAAGTTTGCATT	G	261	PASS	-	-	-	-	-	Del	-	D	55876085	55876109	22	30	482.71	-	-	1	1	1	-	-	./.	0	0	0	0	5	17	5	17	0	0	./.	5	4	4	4	35	41	36	41	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749883849	1	57017704	GTATTACT	G	493	PASS	PPAP2B	CCDS604.1	r.?	-	-	Del	intronic	D	57017704	57017712	7	90	911.117	-	-	1	1	1	PPAP2B|CCDS604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPAP2B|CCDS604.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	9	8	9	8	28	32	28	32	9	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749887039	1	65646828	A	ATGTGTGGG	377	PASS	AK3L2	CCDS629.1	r.?	-	-	Ins	intronic	I	65646828	65646847	8	56	634.3	-	-	2	1	1	AK3L2|CCDS629.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AK3L2|CCDS629.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	7	8	0	0	./.	7	6	6	5	20	31	21	32	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749888481	1	69722345	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	69722345	69722347	1	36	530.391	-	-	1	1	1	-	-	./.	0	0	0	0	3	15	3	15	0	0	./.	5	5	8	6	34	35	36	36	8	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749894232	1	86380087	T	TA	360	PASS	COL24A1	CCDS41353.1	r.?	-	-	Ins	intronic	I	86380087	86380088	1	15	303.544	-	-	0	1	-	COL24A1|CCDS41353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL24A1|CCDS41353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	9	11	0	0	./.	2	4	5	6	28	30	30	30	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749896514	1	92909423	TAA	T	720	PASS	-	-	-	-	-	Del	-	D	92909423	92909426	2	45	644.417	-	-	2	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	8	4	9	5	36	28	36	28	9	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749905104	1	118159199	T	TAC	360	PASS	FAM46C	CCDS896.1	r.?	-	-	Ins	intronic	I	118159199	118159206	2	12	314.984	-	-	3	1	1	FAM46C|CCDS896.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FAM46C|CCDS896.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	1	5	3	7	33	38	33	38	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749905147	1	118321673	G	GA	305	PASS	-	-	-	-	-	Ins	-	I	118321673	118321683	1	15	317.392	-	-	9	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	2	4	2	4	36	51	36	52	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749906443	1	142541013	GAATGGAATACAATGGAGTGGAATGC	G	290	PASS	ENSG00000238159	ENST00000426281	r.110_134del25	c.110_134del25	p.T40fs*>12	Del	frameshift	D	142541013	142541047	25	27	537.014	-	-	1	1	-	ENSG00000238159|ENST00000426281|r.110_134del25|c.110_134del25|p.T40fs*>12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	ENSG00000238159|ENST00000426281|r.110_134del25|c.110_134del25|p.T40fs*>12|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	26	38	26	41	0	0	./.	2	8	0	0	56	125	57	131	2	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749912653	1	154087265	GT	G	300	PASS	NUP210L	CCDS41399.1	r.?	-	-	Del	intronic	D	154087265	154087267	1	6	266.701	-	-	1	1	1	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUP210L|CCDS41399.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	2	10	2	0	0	./.	5	0	10	0	34	27	34	27	10	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749914447	1	158317229	GA	G	360	PASS	-	-	-	-	-	Del	-	D	158317229	158317239	1	16	322.208	-	-	9	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	3	5	6	41	30	41	30	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749915262	1	160441846	AT	A	900	PASS	-	-	-	-	-	Del	-	D	160441846	160441855	1	70	804.919	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	9	6	12	7	39	30	39	30	12	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749915956	1	162215559	AT	A	420	PASS	NOS1AP	CCDS1237.1	r.?	-	-	Del	intronic	D	162215559	162215563	1	14	375.91	-	-	3	1	1	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NOS1AP|CCDS1237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	4	17	4	0	0	./.	1	6	5	7	43	44	43	44	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749918174	1	167965780	CTATAGCTATACAGCAT	C	261	PASS	DCAF6	CCDS1267.2	r.?	-	-	Del	intronic	D	167965780	167965798	16	30	476.69	-	-	1	1	1	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCAF6|CCDS1267.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	4	5	4	47	34	47	34	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749918359	1	168438480	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	168438480	168438490	1	10	265.497	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	4	1	4	1	61	31	62	33	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749919835	1	172419427	G	GTCAC	687	PASS	C1orf105	CCDS1301.1	r.?	-	-	Ins	intronic	I	172419427	172419432	4	54	663.199	-	-	1	1	1	C1orf105|CCDS1301.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf105|CCDS1301.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	9	6	9	0	0	./.	5	8	5	9	43	40	43	40	5	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749921291	1	176218241	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	176218241	176218251	1	15	318.596	-	-	9	1	1	-	-	./.	0	0	0	0	9	19	9	19	0	0	./.	4	2	4	2	42	37	42	37	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749923550	1	181830798	TA	T	749	PASS	-	-	-	-	-	Del	-	D	181830798	181830802	1	50	697.516	-	-	3	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	9	4	9	4	48	39	48	39	9	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749923584	1	181909625	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	181909625	181909631	1	7	318.596	-	-	5	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	0	6	3	12	25	41	25	41	3	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749924994	1	185651917	AGATTACTACAGG	A	348	PASS	-	-	-	-	-	Del	-	D	185651917	185651933	12	48	644.417	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	7	5	7	40	29	40	29	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749927819	1	192674782	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	192674782	192674800	2	15	317.994	-	-	8	1	-	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	2	4	4	44	50	44	50	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749928344	1	193879529	AT	A	360	PASS	-	-	-	-	-	Del	-	D	193879529	193879535	1	12	319.198	-	-	5	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	1	5	1	7	57	41	57	41	1	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749928634	1	194437626	TTC	T	509	PASS	-	-	-	-	-	Del	-	D	194437626	194437629	2	30	483.312	-	-	1	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	5	4	5	4	36	36	36	36	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749928935	1	195083340	AT	A	360	PASS	-	-	-	-	-	Del	-	D	195083340	195083350	1	16	322.208	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	5	6	45	53	45	53	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749930815	1	200074923	G	GA	420	PASS	NR5A2	CCDS1401.1	r.?	-	-	Ins	intronic	I	200074923	200074932	1	18	371.695	-	-	8	1	1	NR5A2|CCDS1401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NR5A2|CCDS1401.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	5	2	6	4	45	48	46	48	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749932119	1	202379041	TC	T	780	PASS	PPP1R12B	CCDS30973.1	r.?	-	-	Del	intronic	D	202379041	202379043	1	56	697.516	-	-	1	1	1	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R12B|CCDS30973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	6	7	6	8	41	37	41	37	6	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749934162	1	206500688	AG	A	367	PASS	-	-	-	-	-	Del	-	D	206500688	206500691	1	16	418.774	-	-	2	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	1	7	1	8	15	53	15	53	1	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749935162	1	209135483	AT	A	494	PASS	-	-	-	-	-	Del	-	D	209135483	209135489	1	30	483.312	-	-	5	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	5	6	37	47	37	47	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749937233	1	213155778	AG	A	540	PASS	VASH2	CCDS1511.1	r.?	-	-	Del	intronic	D	213155778	213155780	1	28	482.71	-	-	1	1	1	VASH2|CCDS1511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VASH2|CCDS1511.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	6	10	7	50	39	50	39	10	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749940825	1	221413263	A	ACCT	1436	PASS	-	-	-	-	-	Ins	-	I	221413263	221413268	3	192	1346.27	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	15	11	16	13	56	47	57	48	16	13	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749941693	1	223464293	CAT	C	269	PASS	SUSD4	CCDS41471.1	r.?	-	-	Del	intronic	D	223464293	223464310	2	12	268.507	-	-	8	1	-	SUSD4|CCDS41471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUSD4|CCDS41471.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	2	5	3	37	40	37	40	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749941824	1	223837795	AAG	A	300	PASS	CAPN8	ENST00000366873	r.?	-	-	Del	intronic	D	223837795	223837808	2	10	267.303	-	-	6	1	1	CAPN8|ENST00000366873|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPN8|ENST00000366873|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	4	1	5	1	60	54	60	54	5	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749942646	1	225383254	CTAA	C	269	PASS	DNAH14	CCDS44321.1	r.?	-	-	Del	intronic	D	225383254	225383258	3	10	266.099	-	-	1	1	1	DNAH14|CCDS44321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH14|CCDS44321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	1	4	2	4	37	46	37	46	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749942719	1	225566583	A	AAC	449	PASS	DNAH14	CCDS44321.1	r.?	-	-	Ins	intronic	I	225566583	225566585	2	16	398.304	-	-	0	1	-	DNAH14|CCDS44321.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH14|CCDS44321.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	7	1	9	40	58	42	59	1	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749943889	1	227500053	TAA	T	838	PASS	CDC42BPA	CCDS1558.1	r.?	-	-	Del	intronic	D	227500053	227500058	2	72	805.521	-	-	4	1	1	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	8	7	9	10	53	50	53	50	9	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749946470	1	233285064	CT	C	480	PASS	PCNXL2	CCDS44335.1	r.?	-	-	Del	intronic	D	233285064	233285066	1	24	429.611	-	-	1	1	1	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCNXL2|CCDS44335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	3	5	9	9	52	52	52	52	9	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749946693	1	233791647	T	TG	540	PASS	KCNK1	CCDS1599.1	r.?	-	-	Ins	intronic	I	233791647	233791651	1	30	473.077	-	-	3	1	1	KCNK1|CCDS1599.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNK1|CCDS1599.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	5	4	7	66	59	66	59	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749946944	1	234381555	TC	T	300	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	intronic	D	234381555	234381558	1	10	268.507	-	-	2	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	1	4	3	4	32	52	32	52	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749947463	1	235325144	TCCAGC	T	329	PASS	RBM34	CCDS41477.1	r.?	-	-	Del	upstream	D	235325144	235325152	5	16	322.208	-	-	1	1	1	RBM34|CCDS41477.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RBM34|CCDS41477.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	9	6	9	6	0	0	./.	3	3	5	4	30	41	30	41	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749947876	1	235989587	A	AC	660	PASS	LYST	CCDS31062.1	r.?	-	-	Ins	intronic	I	235989587	235989591	1	30	584.093	-	-	3	1	1	LYST|CCDS31062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LYST|CCDS31062.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	2	9	4	9	52	66	52	66	4	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749950284	1	240597456	A	AT	298	PASS	FMN2	CCDS31069.2	r.?	-	-	Ins	intronic	I	240597456	240597464	1	15	318.596	-	-	7	1	1	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMN2|CCDS31069.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	8	5	51	46	53	46	8	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749950988	1	241827242	G	GT	300	PASS	WDR64	ENST00000366552	r.?	-	-	Ins	intronic	I	241827242	241827252	1	10	265.497	-	-	9	1	1	WDR64|ENST00000366552|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR64|ENST00000366552|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	4	2	4	50	47	51	47	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749951120	1	242038299	A	AT	660	PASS	EXO1	CCDS1620.1	r.?	-	-	Ins	intronic	I	242038299	242038307	1	42	584.093	-	-	7	1	1	EXO1|CCDS1620.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EXO1|CCDS1620.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	6	5	9	6	60	42	61	42	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749951365	1	242363153	C	CT	1260	PASS	PLD5	CCDS1621.1	r.?	-	-	Ins	intronic	I	242363153	242363162	1	130	1115.09	-	-	8	1	1	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	12	9	14	12	64	64	65	64	14	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749951546	1	242637971	TG	T	1109	PASS	PLD5	CCDS1621.1	r.?	-	-	Del	intronic	D	242637971	242637974	1	108	1019.72	-	-	2	1	1	PLD5|CCDS1621.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLD5|CCDS1621.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	23	12	23	0	0	./.	8	11	12	13	47	55	47	55	12	13	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749952048	1	243636880	C	CA	569	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Ins	intronic	I	243636880	243636882	1	35	530.993	-	-	1	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	5	9	5	0	0	./.	4	6	4	7	40	37	40	37	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749952336	1	244305351	C	CA	2309	PASS	-	-	-	-	-	Ins	-	I	244305351	244305358	1	390	2044.38	-	-	6	1	-	-	-	./.	0	0	0	0	18	9	18	10	0	0	./.	14	25	21	43	61	77	62	80	21	44	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749953061	1	245462219	T	TC	480	PASS	KIF26B	CCDS44342.1	r.?	-	-	Ins	intronic	I	245462219	245462221	1	25	424.795	-	-	1	1	1	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF26B|CCDS44342.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	4	6	4	51	46	51	47	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749953686	1	246558127	A	ACTCAGCTACT	290	PASS	SMYD3	CCDS31083.1	r.?	-	-	Ins	intronic	I	246558127	246558140	10	32	476.808	-	-	1	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	7	3	7	3	63	49	63	50	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749962790	10	17218864	ATATAG	A	346	PASS	TRDMT1	CCDS7115.1	r.?	-	-	Del	intronic	D	17218864	17218870	5	8	376.341	-	-	1	1	1	TRDMT1|CCDS7115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRDMT1|CCDS7115.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	0	7	0	10	4	38	4	38	0	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749963519	10	19292329	CT	C	300	PASS	-	-	-	-	-	Del	-	D	19292329	19292337	1	12	269.675	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	2	3	5	7	35	36	35	36	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749964806	10	22841499	G	GT	420	PASS	PIP4K2A	CCDS7141.1	r.?	-	-	Ins	intronic	I	22841499	22841501	1	20	373.331	-	-	1	1	1	PIP4K2A|CCDS7141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIP4K2A|CCDS7141.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	3	5	4	25	22	25	22	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749965779	10	25822997	G	GCT	780	PASS	GPR158	CCDS31166.1	r.?	-	-	Ins	intronic	I	25822997	25822998	2	56	685.501	-	-	0	1	1	GPR158|CCDS31166.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR158|CCDS31166.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	7	12	7	41	33	42	33	12	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749970570	10	36968226	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	36968226	36968228	1	10	265.461	-	-	1	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	1	4	1	4	21	33	22	33	1	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749971957	10	42498158	CT	C	480	PASS	-	-	-	-	-	Del	-	D	42498158	42498166	1	24	431.48	-	-	7	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	3	5	7	6	37	42	37	42	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749972000	10	42537846	C	CTG	290	PASS	-	-	-	-	-	Ins	-	I	42537846	42537847	2	13	632.771	-	-	0	1	1	-	-	./.	0	0	0	0	23	4	26	4	0	0	./.	12	0	14	0	95	19	99	20	14	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749976144	10	55314508	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	55314508	55314512	2	12	269.675	-	-	1	1	1	-	-	./.	0	0	0	0	24	9	24	9	0	0	./.	3	2	3	2	19	10	19	10	3	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749977980	10	59934368	GC	G	840	PASS	-	-	-	-	-	Del	-	D	59934368	59934375	1	55	752.682	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	10	5	12	21	41	21	41	5	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749978215	10	60524480	C	CT	360	PASS	BICC1	CCDS31206.1	r.?	-	-	Ins	intronic	I	60524480	60524484	1	12	318.794	-	-	3	1	1	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BICC1|CCDS31206.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	1	5	1	8	36	35	36	35	1	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749979501	10	64388515	TG	T	525	PASS	ZNF365	CCDS7264.1	r.?	-	-	Del	intronic	D	64388515	64388518	1	35	539.35	-	-	2	1	1	ZNF365|CCDS7264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF365|CCDS7264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	9	20	9	0	0	./.	6	4	8	5	45	19	45	19	8	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749979639	10	64747534	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	64747534	64747544	1	6	260.042	-	-	9	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	0	5	0	6	42	30	42	30	0	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749980568	10	67065687	CGT	C	360	PASS	-	-	-	-	-	Del	-	D	67065687	67065705	2	16	323.61	-	-	8	1	-	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	3	3	3	32	32	32	32	3	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749982561	10	71494464	ACG	A	300	PASS	-	-	-	-	-	Del	-	D	71494464	71494468	2	10	269.675	-	-	1	1	-	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	6	3	39	26	39	26	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749984938	10	78058321	CACCAAGT	C	290	PASS	C10orf11	CCDS7351.1	r.?	-	-	Del	intronic	D	78058321	78058331	7	27	539.35	-	-	1	1	1	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|CCDS7351.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	8	3	9	33	56	33	56	3	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749985552	10	80147550	TGGTCA	T	534	PASS	-	-	-	-	-	Del	-	D	80147550	80147556	5	45	647.22	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	8	5	10	22	48	22	48	5	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749985969	10	81636710	A	AG	281	PASS	-	-	-	-	-	Ins	-	I	81636710	81636716	1	25	426.663	-	-	5	1	1	-	-	./.	0	0	0	0	12	6	13	6	0	0	./.	4	4	6	5	21	22	21	22	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749986593	10	83156783	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	83156783	83156791	1	14	373.331	-	-	7	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	6	4	8	32	25	33	25	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749988424	10	88833934	ATGT	A	689	PASS	GLUD1	CCDS7382.1	r.?	-	-	Del	intronic	D	88833934	88833941	3	45	647.22	-	-	2	1	1	GLUD1|CCDS7382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLUD1|CCDS7382.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	4	8	5	12	45	32	45	32	5	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749989203	10	91366577	C	CGGGG	377	PASS	PANK1	CCDS31244.1	r.?	-	-	Ins	intronic	I	91366577	91366579	4	20	359.483	-	-	1	1	1	PANK1|CCDS31244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PANK1|CCDS31244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	14	10	0	0	./.	3	4	3	4	18	33	18	33	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749991105	10	96498241	TCTGA	T	420	PASS	CYP2C18	CCDS7435.1	r.?	-	-	Del	downstream	D	96498241	96498249	4	20	376.341	-	-	1	1	1	CYP2C18|CCDS7435.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CYP2C18|CCDS7435.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	4	13	4	13	0	0	./.	4	3	8	3	48	28	48	28	8	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749993433	10	102291158	CA	C	480	PASS	HIF1AN	CCDS7498.1	r.?	-	-	Del	upstream	D	102291158	102291166	1	24	431.48	-	-	7	1	-	HIF1AN|CCDS7498.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	HIF1AN|CCDS7498.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	15	12	15	12	0	0	./.	3	5	6	5	35	36	35	36	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2749994859	10	105844556	AAGAG	A	507	PASS	COL17A1	CCDS7554.1	r.?	-	-	Del	intronic	D	105844556	105844564	4	32	537.544	-	-	3	1	1	COL17A1|CCDS7554.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	COL17A1|CCDS7554.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	3	7	4	8	30	43	30	43	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750006466	11	1407010	A	AAG	329	PASS	BRSK2	CCDS41590.1	r.?	-	-	Ins	upstream	I	1407010	1407016	2	15	315.626	-	-	2	1	-	BRSK2|CCDS41590.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	BRSK2|CCDS41590.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	9	12	9	0	0	./.	2	4	1	0	29	24	29	24	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750011482	11	14006754	CCATCATCACGTCAACA	C	290	PASS	SPON1	ENST00000310358	r.?	-	-	Del	intronic	D	14006754	14006775	16	32	540.091	-	-	1	1	1	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPON1|ENST00000310358|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	7	3	6	3	32	25	33	25	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750016209	11	26220158	AG	A	420	PASS	-	-	-	-	-	Del	-	D	26220158	26220160	1	20	378.064	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	6	7	28	34	28	34	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750017198	11	29073310	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	29073310	29073318	1	10	267.035	-	-	7	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	1	4	1	5	28	40	28	40	1	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750019849	11	36716494	CTGTT	C	369	PASS	-	-	-	-	-	Del	-	D	36716494	36716504	4	24	432.073	-	-	2	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	5	4	6	32	34	33	34	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750019925	11	36962570	AAGC	A	327	PASS	-	-	-	-	-	Del	-	D	36962570	36962576	3	18	378.064	-	-	1	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	5	2	6	3	36	20	36	20	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750022646	11	44281862	CTG	C	569	PASS	ALX4	CCDS31468.1	r.?	-	-	Del	downstream	D	44281862	44281868	2	20	539.489	-	-	2	1	1	ALX4|CCDS31468.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	ALX4|CCDS31468.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	13	12	13	12	0	0	./.	1	9	1	9	28	43	28	43	1	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750027278	11	60146791	G	GT	300	PASS	MS4A7	CCDS7985.1	r.?	-	-	Ins	intronic	I	60146791	60146793	1	10	266.433	-	-	1	1	1	MS4A7|CCDS7985.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MS4A7|CCDS7985.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	9	2	41	32	41	33	9	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750031486	11	71145575	A	AAAAGG	803	PASS	DHCR7	CCDS8200.1	r.2546_2547insccuuu	c.?	p.?	Ins	3'UTR variant	I	71145575	71145582	5	90	863.367	-	-	1	1	1	DHCR7|CCDS8200.1|r.2546_2547insccuuu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	DHCR7|CCDS8200.1|r.2546_2547insccuuu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	13	8	15	8	0	0	./.	9	8	9	8	40	39	41	39	9	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750033138	11	75609019	T	TTC	660	PASS	UVRAG	CCDS8241.1	r.?	-	-	Ins	intronic	I	75609019	75609030	2	40	579.651	-	-	5	1	1	UVRAG|CCDS8241.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UVRAG|CCDS8241.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	7	4	8	7	45	39	45	39	8	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750034915	11	80878555	TTCTT	TTTG	418	PASS	-	-	-	-	-	Complex	-	DI	80878556	80878559	4	25	0	-	-	0	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	4	4	0	0	31	27	31	27	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750040502	11	97770055	CTG	C	600	PASS	-	-	-	-	-	Del	-	D	97770055	97770058	2	35	539.489	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	6	6	8	26	32	26	32	6	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750044992	11	109764909	CA	C	960	PASS	-	-	-	-	-	Del	-	D	109764909	109764919	1	80	864.145	-	-	9	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	9	7	10	8	34	30	34	30	10	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750045667	11	111551132	G	GT	300	PASS	SIK2	CCDS8347.1	r.?	-	-	Ins	intronic	I	111551132	111551142	1	12	266.433	-	-	9	1	1	SIK2|CCDS8347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SIK2|CCDS8347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	2	3	23	36	24	37	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750045955	11	112199063	T	TG	420	PASS	AP002841.2	ENST00000504610	r.?	-	-	Ins	intronic	I	112199063	112199070	1	20	373.849	-	-	6	1	1	AP002841.2|ENST00000504610|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AP002841.2|ENST00000504610|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	14	15	0	0	./.	4	3	6	3	32	30	32	30	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750049259	11	121245806	ACT	A	269	PASS	-	-	-	-	-	Del	-	D	121245806	121245823	2	10	268.239	-	-	8	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	1	34	26	34	26	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750051164	11	126293813	CGCAGAGTTCAGCG	C	435	PASS	KIRREL3	ENST00000278934	r.2936_2948delCGCUGAACUCUGC	c.?	p.?	Del	3'UTR variant	D	126293813	126293830	13	66	804.116	-	-	1	1	1	KIRREL3|ENST00000278934|r.2936_2948delCGCUGAACUCUGC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	KIRREL3|ENST00000278934|r.2936_2948delCGCUGAACUCUGC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	16	8	16	0	0	./.	5	10	5	10	23	31	23	32	5	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750054461	12	1508870	TGTAGCATGTATCA	T	261	PASS	ERC1	CCDS8508.1	r.?	-	-	Del	intronic	D	1508870	1508887	13	30	486.151	-	-	1	1	1	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	5	3	5	28	32	29	32	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750055798	12	5197688	TGGCCTGACGTGGCAG	T	348	PASS	-	-	-	-	-	Del	-	D	5197688	5197706	15	40	647.6	-	-	1	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	9	3	9	27	37	27	37	3	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750056707	12	7545636	G	GA	768	PASS	CD163L1	CCDS8577.1	r.?	-	-	Ins	intronic	I	7545636	7545645	1	60	739.98	-	-	8	1	1	CD163L1|CCDS8577.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CD163L1|CCDS8577.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	9	5	9	7	37	44	37	44	9	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750057885	12	9796665	TA	T	780	PASS	-	-	-	-	-	Del	-	D	9796665	9796668	1	56	702.219	-	-	2	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	6	7	7	9	26	41	26	41	7	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750061513	12	18484127	T	TA	360	PASS	PIK3C2G	CCDS44839.1	r.?	-	-	Ins	intronic	I	18484127	18484135	1	12	319.887	-	-	7	1	1	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	1	5	2	5	13	43	13	43	2	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750062227	12	20114386	TA	T	660	PASS	-	-	-	-	-	Del	-	D	20114386	20114395	1	42	594.185	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	5	8	6	31	28	31	28	8	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750063482	12	23383284	TCTCTTATGGATAGTGGCTA	T	348	PASS	-	-	-	-	-	Del	-	D	23383284	23383309	19	48	646.998	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	5	7	3	5	27	26	29	28	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750067242	12	32329891	G	GTAGT	480	PASS	BICD1	CCDS8726.1	r.?	-	-	Ins	intronic	I	32329891	32329898	4	24	412.869	-	-	1	1	1	BICD1|CCDS8726.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BICD1|CCDS8726.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	3	5	10	8	38	37	39	37	10	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750068114	12	38206114	CT	C	449	PASS	-	-	-	-	-	Del	-	D	38206114	38206119	1	24	432.135	-	-	4	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	5	3	8	4	34	29	34	29	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750068365	12	38974647	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	38974647	38974655	1	10	266.472	-	-	7	1	-	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	1	5	4	36	33	36	33	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750068537	12	39614013	CTG	C	660	PASS	-	-	-	-	-	Del	-	D	39614013	39614018	2	36	593.583	-	-	2	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	8	6	9	36	36	36	36	6	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750075504	12	58201898	TCACCTGCAC	T	290	PASS	AVIL	CCDS8959.1	r.?	-	-	Del	intronic	D	58201898	58201909	9	36	538.964	-	-	1	1	1	AVIL|CCDS8959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AVIL|CCDS8959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	5	5	5	5	20	28	20	28	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750077414	12	64422175	A	AAT	480	PASS	SRGAP1	CCDS8967.1	r.?	-	-	Ins	intronic	I	64422175	64422177	2	21	422.502	-	-	0	1	1	SRGAP1|CCDS8967.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRGAP1|CCDS8967.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	10	8	10	0	0	./.	2	6	5	7	28	39	28	39	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750078217	12	66709604	TCTTACTTCC	T	319	PASS	HELB	CCDS8976.1	r.?	-	-	Del	intronic	D	66709604	66709618	9	36	591.175	-	-	1	1	1	HELB|CCDS8976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HELB|CCDS8976.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	8	3	8	4	31	21	31	21	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750080721	12	73958565	C	CG	900	PASS	-	-	-	-	-	Ins	-	I	73958565	73958572	1	70	800.017	-	-	6	1	1	-	-	./.	0	0	0	0	19	14	19	14	0	0	./.	9	6	13	7	43	40	44	40	13	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750082853	12	80367598	CT	C	600	PASS	-	-	-	-	-	Del	-	D	80367598	80367608	1	35	538.964	-	-	9	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	6	4	6	5	32	31	32	31	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750084152	12	84630802	TG	T	540	PASS	-	-	-	-	-	Del	-	D	84630802	84630804	1	30	486.151	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	4	5	6	6	36	21	36	21	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750084356	12	85103719	A	AAT	480	PASS	-	-	-	-	-	Ins	-	I	85103719	85103729	2	21	421.298	-	-	4	1	1	-	-	./.	0	0	0	0	16	15	17	15	0	0	./.	6	2	6	3	35	32	35	33	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750085944	12	90189953	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	90189953	90189972	2	10	270.084	-	-	9	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	4	1	4	1	33	14	33	14	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750088632	12	96778155	AC	A	420	PASS	CDK17	CCDS9061.1	r.?	-	-	Del	intronic	D	96778155	96778158	1	20	378.118	-	-	2	1	1	CDK17|CCDS9061.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDK17|CCDS9061.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	3	7	3	28	37	28	37	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750088664	12	96834583	T	TA	344	PASS	-	-	-	-	-	Ins	-	I	96834583	96834586	1	35	534.148	-	-	2	1	1	-	-	./.	0	0	0	0	14	8	14	9	0	0	./.	4	6	4	7	28	38	28	39	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750091585	12	104865926	T	TC	420	PASS	CHST11	CCDS9099.1	r.?	-	-	Ins	intronic	I	104865926	104865927	1	20	372.699	-	-	0	1	-	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHST11|CCDS9099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	3	10	6	27	30	27	30	10	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750094169	12	112229709	G	GA	300	PASS	ALDH2	CCDS9155.1	r.?	-	-	Ins	intronic	I	112229709	112229719	1	12	267.074	-	-	9	1	1	ALDH2|CCDS9155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALDH2|CCDS9155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	2	3	33	26	34	27	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750100100	12	126601534	AT	A	480	PASS	-	-	-	-	-	Del	-	D	126601534	126601536	1	24	432.135	-	-	1	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	3	5	4	6	28	36	28	36	4	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750101913	12	131007748	T	TG	660	PASS	-	-	-	-	-	Ins	-	I	131007748	131007757	1	40	579.736	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	4	7	4	8	38	38	39	38	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750101975	12	131201158	GCA	G	269	PASS	-	-	-	-	-	Del	-	D	131201158	131201177	2	12	264.666	-	-	9	1	-	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	3	21	28	21	28	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750102450	12	132380996	ACCAGGAACCTGAGGCGGGAGATCCGCCCCGCCAAAGTGCTGACTAATGGCTCTGTGACCTGTTTACTGAGCCCAGGGCC	A	261	PASS	ULK1	CCDS9274.1	r.?	-	-	Del	intronic	D	132380996	132381077	79	30	486.151	-	-	1	1	1	ULK1|CCDS9274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ULK1|CCDS9274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	9	2	9	0	0	./.	5	4	0	0	17	32	22	36	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750113918	13	47181991	G	GGA	660	PASS	LRCH1	CCDS31972.1	r.?	-	-	Ins	intronic	I	47181991	47181997	2	40	582.816	-	-	2	1	1	LRCH1|CCDS31972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRCH1|CCDS31972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	4	7	4	7	22	25	22	25	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750116302	13	53899156	AT	A	420	PASS	-	-	-	-	-	Del	-	D	53899156	53899166	1	20	378.709	-	-	9	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	3	4	4	8	28	21	28	21	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750116868	13	56017171	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	56017171	56017180	1	14	375.097	-	-	8	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	6	1	9	4	22	22	22	23	9	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750117476	13	58115086	TGAG	TCA	269	PASS	-	-	-	-	-	Complex	-	DI	58115087	58115089	3	10	0	-	-	0	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	4	1	0	0	30	26	30	26	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750120134	13	66287232	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	66287232	66287242	1	30	579.203	-	-	9	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	9	4	10	41	36	41	37	4	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750121051	13	69112822	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	69112822	69112826	1	24	426.876	-	-	3	1	1	-	-	./.	0	0	0	0	15	18	15	19	0	0	./.	3	5	5	9	19	31	19	31	5	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750123630	13	76190694	TA	T	785	PASS	LMO7	CCDS9454.1	r.?	-	-	Del	upstream	D	76190694	76190696	1	64	757.419	-	-	1	1	1	LMO7|CCDS9454.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LMO7|CCDS9454.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	14	11	14	11	0	0	./.	7	7	9	12	34	32	34	32	9	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750128898	13	92904542	AT	A	420	PASS	GPC5	CCDS9468.1	r.?	-	-	Del	intronic	D	92904542	92904548	1	20	379.312	-	-	5	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	4	5	5	29	32	29	32	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750128986	13	93258103	GA	G	358	PASS	GPC5	CCDS9468.1	r.?	-	-	Del	intronic	D	93258103	93258112	1	20	379.312	-	-	8	1	1	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	7	6	18	21	18	21	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750134228	13	107963446	AT	A	300	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	intronic	D	107963446	107963455	1	12	270.335	-	-	8	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	2	4	4	23	17	23	17	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750134322	13	108242140	CT	C	540	PASS	FAM155A	CCDS32006.1	r.?	-	-	Del	intronic	D	108242140	108242145	1	30	487.686	-	-	4	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	5	4	8	6	26	30	26	30	8	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750136476	14	19013468	A	AA	540	PASS	-	-	-	-	-	Ins	-	I	19013466	19013469	1	10	482.16	-	-	2	1	1	-	-	./.	0	0	0	0	11	24	11	24	0	0	./.	0	9	0	1	57	164	57	165	0	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750141063	14	30370081	TTA	T	1020	PASS	PRKD1	CCDS9637.1	r.?	-	-	Del	intronic	D	30370081	30370086	2	88	920.982	-	-	2	1	1	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKD1|CCDS9637.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	10	7	15	9	44	32	44	32	15	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750142254	14	33430320	G	GA	540	PASS	NPAS3	CCDS9645.1	r.?	-	-	Ins	intronic	I	33430320	33430329	1	30	482.16	-	-	8	1	1	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPAS3|CCDS9645.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	5	7	6	42	31	42	32	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750143637	14	36707918	G	GGGA	960	PASS	-	-	-	-	-	Ins	-	I	36707918	36707924	3	72	833.693	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	5	11	6	11	33	43	33	44	6	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750146871	14	45418692	AATCAGCAACT	A	261	PASS	KLHL28	CCDS9680.1	r.?	-	-	Del	intronic	D	45418692	45418704	10	28	486.977	-	-	1	1	1	KLHL28|CCDS9680.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KLHL28|CCDS9680.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	6	3	6	3	31	24	31	24	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750148175	14	49166687	CAGG	C	658	PASS	-	-	-	-	-	Del	-	D	49166687	49166693	3	45	647.697	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	8	7	9	31	41	31	41	7	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750149517	14	51906807	CA	C	360	PASS	-	-	-	-	-	Del	-	D	51906807	51906812	1	15	325.052	-	-	4	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	4	4	7	36	30	36	30	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750156251	14	70512373	GC	G	480	PASS	SLC8A3	CCDS35498.1	r.3828delG	c.?	p.?	Del	3'UTR variant	D	70512373	70512375	1	25	433.403	-	-	1	1	1	SLC8A3|CCDS35498.1|r.3828delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SLC8A3|CCDS35498.1|r.3828delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	4	5	36	41	36	41	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750158170	14	74697755	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	74697755	74697765	1	12	260.642	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	10	14	0	0	./.	3	2	4	3	32	38	32	38	4	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750160426	14	80024948	AT	A	360	PASS	NRXN3	CCDS45145.1	r.?	-	-	Del	intronic	D	80024948	80024950	1	12	324.45	-	-	1	1	1	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRXN3|CCDS45145.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	5	1	7	4	43	24	43	24	7	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750161788	14	84342721	G	GC	480	PASS	-	-	-	-	-	Ins	-	I	84342721	84342729	1	24	427.383	-	-	7	1	1	-	-	./.	0	0	0	0	9	16	10	16	0	0	./.	3	5	4	5	32	36	33	36	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750162239	14	85615158	CT	C	540	PASS	-	-	-	-	-	Del	-	D	85615158	85615167	1	28	483.364	-	-	8	1	1	-	-	./.	0	0	0	0	4	16	4	16	0	0	./.	3	6	3	10	18	30	18	30	3	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750163725	14	89813348	GC	G	420	PASS	FOXN3	CCDS32138.1	r.?	-	-	Del	intronic	D	89813348	89813355	1	20	378.024	-	-	6	1	1	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	10	6	10	0	0	./.	4	3	7	3	26	29	26	29	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750164033	14	90459989	T	TC	780	PASS	TDP1	CCDS9888.1	r.?	-	-	Ins	intronic	I	90459989	90459993	1	54	696.454	-	-	3	1	1	TDP1|CCDS9888.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TDP1|CCDS9888.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	10	15	0	0	./.	8	5	10	5	28	33	28	33	10	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750165105	14	93010364	A	AC	300	PASS	RIN3	CCDS32144.1	r.?	-	-	Ins	intronic	I	93010364	93010372	1	10	267.867	-	-	7	1	1	RIN3|CCDS32144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIN3|CCDS32144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	1	4	2	4	15	24	15	24	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750172955	15	25572782	TGCTAT	TTC	300	PASS	-	-	-	-	-	Complex	-	DI	25572783	25572787	5	12	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	0	0	33	37	33	37	3	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750183881	15	54962628	AAC	A	540	PASS	-	-	-	-	-	Del	-	D	54962628	54962632	2	28	477.682	-	-	1	1	1	-	-	./.	0	0	0	0	8	19	8	19	0	0	./.	3	6	4	9	41	39	41	39	5	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750186053	15	60161417	GC	G	360	PASS	-	-	-	-	-	Del	-	D	60161417	60161419	1	15	324.676	-	-	1	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	11	4	43	34	43	34	11	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750186992	15	62779208	TA	T	300	PASS	-	-	-	-	-	Del	-	D	62779208	62779212	1	12	270.463	-	-	3	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	2	4	36	26	36	26	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750187698	15	64453582	G	GT	540	PASS	CSNK1G1	CCDS10192.2	r.?	-	-	Ins	downstream	I	64453582	64453583	1	18	480.09	-	-	0	1	1	CSNK1G1|CCDS10192.2|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PPIB|CCDS10191.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	1	8	3	10	39	39	39	39	3	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750190493	15	71036167	ACCAGTGGCAATTTCCACACTACAAAACT	A	261	PASS	UACA	CCDS10235.1	r.?	-	-	Del	intronic	D	71036167	71036201	28	30	487.315	-	-	1	1	1	UACA|CCDS10235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UACA|CCDS10235.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	4	5	4	4	39	27	39	28	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750190550	15	71210854	T	TA	420	PASS	LRRC49	CCDS32282.1	r.?	-	-	Ins	intronic	I	71210854	71210864	1	20	375.277	-	-	9	1	1	LRRC49|CCDS32282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC49|CCDS32282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	3	4	3	7	44	35	44	35	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750191011	15	72482616	AGGCT	A	360	PASS	GRAMD2	CCDS32283.1	r.?	-	-	Del	intronic	D	72482616	72482622	4	15	325.278	-	-	1	1	1	GRAMD2|CCDS32283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRAMD2|CCDS32283.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	2	4	4	5	36	35	36	35	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750191856	15	75081922	TTAATTC	T	319	PASS	CSK	CCDS10269.1	r.?	-	-	Del	intronic	D	75081922	75081930	6	40	592.731	-	-	1	1	1	CSK|CCDS10269.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CSK|CCDS10269.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	4	7	7	7	24	37	24	40	7	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750192784	15	77664740	CA	C	540	PASS	-	-	-	-	-	Del	-	D	77664740	77664745	1	30	487.917	-	-	4	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	5	5	6	23	35	23	35	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750193196	15	78738780	C	CGCTG	569	PASS	IREB2	CCDS10302.1	r.?	-	-	Ins	intronic	I	78738780	78738784	4	35	518.048	-	-	0	1	1	IREB2|CCDS10302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IREB2|CCDS10302.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	15	10	0	0	./.	6	4	6	5	28	22	28	22	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750193239	15	78810113	GACCAATTT	G	278	PASS	AGPHD1	CCDS42063.1	r.?	-	-	Del	intronic	D	78810113	78810124	8	32	542.13	-	-	1	1	1	AGPHD1|CCDS42063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGPHD1|CCDS42063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	7	3	7	2	33	22	33	23	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750193584	15	79632241	G	GATT	418	PASS	TMED3	ENST00000424155	r.?	-	-	Ins	intronic	I	79632241	79632246	3	24	418.05	-	-	1	1	-	TMED3|ENST00000424155|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMED3|ENST00000424155|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	5	3	10	28	53	28	53	3	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750194186	15	81044479	GC	G	600	PASS	FAM108C1	CCDS45323.1	r.?	-	-	Del	intronic	D	81044479	81044481	1	36	541.528	-	-	1	1	1	FAM108C1|CCDS45323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM108C1|CCDS45323.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	5	6	7	28	31	28	31	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750196527	15	88080411	TCCAGGTCTCTTTGCAGAATA	T	290	PASS	-	-	-	-	-	Del	-	D	88080411	88080436	20	32	540.324	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	7	3	7	4	39	33	39	33	7	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750204957	16	5844512	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	5844512	5844532	2	10	269.634	-	-	9	1	-	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	4	1	4	1	38	27	38	27	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750210212	16	16251079	TA	T	1440	PASS	ABCC6	CCDS10568.1	r.?	-	-	Del	intronic	D	16251079	16251082	1	168	1298.22	-	-	2	1	1	ABCC6|CCDS10568.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC6|CCDS10568.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	13	11	17	12	40	27	40	27	17	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750216778	16	32109208	CCTCT	C	324	PASS	-	-	-	-	-	Del	-	D	32109208	32109218	4	15	757.143	-	-	4	1	1	-	-	./.	0	0	0	0	27	36	27	36	0	0	./.	0	14	0	15	49	139	49	139	0	15	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750219880	16	46590868	G	GA	336	PASS	ANKRD26P1	ENST00000329373	r.?	-	-	Ins	intronic	I	46590868	46590875	1	15	321.393	-	-	6	1	1	ANKRD26P1|ENST00000329373|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD26P1|ENST00000329373|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	4	3	6	24	25	25	26	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750223894	16	58460801	G	GGCT	420	PASS	-	-	-	-	-	Ins	-	I	58460801	58460807	3	20	362.918	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	4	3	9	29	32	29	32	3	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750224339	16	59457391	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	59457391	59457397	1	56	696.352	-	-	5	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	6	7	7	7	28	41	28	42	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750225252	16	62105375	CA	C	389	PASS	-	-	-	-	-	Del	-	D	62105375	62105379	1	18	365.928	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	2	13	3	48	39	48	39	13	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750228488	16	71076910	AT	A	480	PASS	HYDIN2	CCDS42189.1	r.?	-	-	Del	intronic	D	71076910	71076917	1	16	433.341	-	-	6	1	1	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HYDIN2|CCDS42189.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	31	23	31	0	0	./.	7	1	10	2	57	107	57	107	10	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750229008	16	72366227	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	72366227	72366233	1	8	374.357	-	-	5	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	7	0	9	2	31	25	32	25	9	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750229067	16	72557735	GAGAA	G	300	PASS	-	-	-	-	-	Del	-	D	72557735	72557750	4	6	270.838	-	-	3	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	0	5	2	7	29	27	29	27	2	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750234272	16	84920895	CGTG	C	538	PASS	CRISPLD2	CCDS10949.1	r.?	-	-	Del	intronic	D	84920895	84920899	3	35	541.676	-	-	1	1	1	CRISPLD2|CCDS10949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRISPLD2|CCDS10949.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	4	6	6	7	26	31	26	31	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750236745	17	898225	C	CT	300	PASS	TIMM22	CCDS32521.1	r.?	-	-	Ins	upstream	I	898225	898234	1	12	267.053	-	-	8	1	1	TIMM22|CCDS32521.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TIMM22|CCDS32521.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	7	11	7	0	0	./.	3	2	6	5	48	32	49	32	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750236752	17	914835	CA	C	540	PASS	ABR	CCDS10999.1	r.?	-	-	Del	intronic	D	914835	914840	1	30	485.391	-	-	4	1	1	ABR|CCDS10999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABR|CCDS10999.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	5	4	6	6	33	31	33	31	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750236803	17	1025598	A	AG	300	PASS	ABR	CCDS10999.1	r.?	-	-	Ins	intronic	I	1025598	1025601	1	12	267.655	-	-	2	1	1	ABR|CCDS10999.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ABR|CCDS10999.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	3	2	5	4	39	31	40	31	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750238106	17	3541128	GGTA	G	660	PASS	SHPK	CCDS11030.1	r.?	-	-	Del	upstream	D	3541128	3541134	3	42	595.463	-	-	1	1	1	SHPK|CCDS11030.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CTNS|CCDS11031.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	5	6	5	8	35	37	35	37	5	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750239002	17	5287466	GTAA	G	509	PASS	RABEP1	CCDS45592.1	r.3725_3727delUAA	c.?	p.?	Del	3'UTR variant	D	5287466	5287470	3	30	486.595	-	-	1	1	1	RABEP1|CCDS45592.1|r.3725_3727delUAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RABEP1|CCDS45592.1|r.3725_3727delUAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	13	11	13	0	0	./.	4	5	4	8	36	40	36	40	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750239395	17	6251095	TTGA	T	420	PASS	-	-	-	-	-	Del	-	D	6251095	6251101	3	18	376.523	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	2	6	2	43	27	43	27	6	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750239951	17	7577501	GGAGTCTTCC	GGAT	261	PASS	TP53	CCDS11118.1	r.961_969delGGAAGACUCinsauc	c.771_779delGGAAGACTCinsATC	p.E258_D259delED	Complex	protein_coding:CDS:exon:indel:inframe_variant:inframe_codon_loss	DI	7577502	7577510	9	28	0	-	-	0	1	1	TP53|CCDS11118.1|r.961_969delGGAAGACUCinsauc|c.771_779delGGAAGACTCinsATC|p.E258_D259delED|protein_coding:CDS:exon:indel:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:1000032:SO:0001650:SO:0001652	TP53|CCDS11118.1|r.961_969delGGAAGACUCinsauc|c.771_779delGGAAGACTCinsATC|p.E258_D259delED|protein_coding:CDS:exon:indel:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:1000032:SO:0001650:SO:0001652	./.	0	0	0	0	8	9	8	9	0	0	./.	6	3	0	0	18	22	18	22	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750243695	17	17780420	C	CA	540	PASS	TOM1L2	CCDS42270.1	r.?	-	-	Ins	intronic	I	17780420	17780422	1	28	474.554	-	-	1	1	1	TOM1L2|CCDS42270.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TOM1L2|CCDS42270.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	6	3	8	4	34	21	34	22	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750248116	17	30337574	AT	A	300	PASS	-	-	-	-	-	Del	-	D	30337574	30337579	1	6	270.665	-	-	4	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	0	5	2	10	32	46	32	46	2	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750252079	17	38360547	GTT	G	389	PASS	-	-	-	-	-	Del	-	D	38360547	38360553	2	20	378.931	-	-	5	1	-	-	-	./.	0	0	0	0	3	7	3	7	0	0	./.	4	3	5	9	146	156	146	156	5	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750252240	17	38434425	G	GT	1558	PASS	WIPF2	CCDS11364.1	r.?	-	-	Ins	intronic	I	38434425	38434434	1	204	1439.92	-	-	8	1	1	WIPF2|CCDS11364.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WIPF2|CCDS11364.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	12	6	0	0	./.	16	11	23	15	136	122	148	122	24	15	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750256137	17	47112118	C	CCA	569	PASS	IGF2BP1	CCDS11543.1	r.?	-	-	Ins	intronic	I	47112118	47112119	2	11	528.085	-	-	0	1	-	IGF2BP1|CCDS11543.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGF2BP1|CCDS11543.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	0	10	1	0	63	49	66	51	1	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750257026	17	48239416	CT	C	457	PASS	SGCA	CCDS32679.1	r.?	-	-	Del	upstream	D	48239416	48239418	1	24	430.656	-	-	1	1	1	SGCA|CCDS32679.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SGCA|CCDS32679.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	9	15	9	15	0	0	./.	3	5	4	8	66	50	66	50	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750258650	17	51670912	C	CT	2340	PASS	-	-	-	-	-	Ins	-	I	51670912	51670917	1	414	2084.09	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	14	0	0	./.	17	22	21	25	67	74	68	75	21	25	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750261926	17	57507875	TC	T	420	PASS	-	-	-	-	-	Del	-	D	57507875	57507877	1	8	371.706	-	-	1	1	-	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	7	0	37	0	142	91	142	91	37	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750262975	17	58461712	AAG	A	360	PASS	USP32	CCDS32697.1	r.?	-	-	Del	intronic	D	58461712	58461716	2	15	321.788	-	-	1	1	1	USP32|CCDS32697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP32|CCDS32697.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	2	4	3	5	73	85	73	85	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750265472	17	63147773	C	CAG	387	PASS	RGS9	CCDS42373.1	r.?	-	-	Ins	intronic	I	63147773	63147777	2	16	422.227	-	-	1	1	1	RGS9|CCDS42373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS9|CCDS42373.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	1	7	1	8	32	38	32	38	1	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750266969	17	66059451	AG	A	300	PASS	-	-	-	-	-	Del	-	D	66059451	66059453	1	12	270.063	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	4	5	20	44	20	44	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750267148	17	66334895	TGTAAAGCGCCCTGTTC	T	841	PASS	ARSG	CCDS11676.1	r.?	-	-	Del	intronic	D	66334895	66334915	16	234	1568.05	-	-	1	1	1	ARSG|CCDS11676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARSG|CCDS11676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	12	17	12	16	48	66	48	67	12	17	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750268662	17	69909880	AT	A	360	PASS	-	-	-	-	-	Del	-	D	69909880	69909882	1	7	324.798	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	0	6	1	9	24	33	24	33	1	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750270740	17	74261880	CG	C	300	PASS	FAM100B	CCDS11742.1	r.?	-	-	Del	intronic	D	74261880	74261886	1	12	265.849	-	-	5	1	1	FAM100B|CCDS11742.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM100B|CCDS11742.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	5	3	27	27	27	27	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750274116	18	498136	C	CA	300	PASS	COLEC12	CCDS32782.1	r.?	-	-	Ins	intronic	I	498136	498138	1	10	268.072	-	-	1	1	1	COLEC12|CCDS32782.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COLEC12|CCDS32782.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	1	4	1	6	21	31	21	31	1	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750276853	18	7228797	G	GA	420	PASS	LRRC30	CCDS42409.1	r.?	-	-	Ins	upstream	I	7228797	7228804	1	20	375.301	-	-	6	1	1	LRRC30|CCDS42409.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	LRRC30|CCDS42409.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	10	8	10	0	0	./.	4	3	8	4	40	24	40	24	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750279856	18	14928447	C	CTGA	298	PASS	-	-	-	-	-	Ins	-	I	14928447	14928453	3	15	314.461	-	-	1	1	1	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	4	2	5	2	44	31	45	31	5	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750280341	18	18640115	AG	A	780	PASS	ROCK1	CCDS11870.2	r.?	-	-	Del	intronic	D	18640115	18640117	1	56	703.007	-	-	1	1	1	ROCK1|CCDS11870.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROCK1|CCDS11870.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	6	7	8	8	33	35	33	35	8	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750280421	18	18910129	AG	A	420	PASS	GREB1L	CCDS45836.1	r.?	-	-	Del	intronic	D	18910129	18910131	1	8	379.515	-	-	1	1	1	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GREB1L|CCDS45836.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	7	0	9	2	35	24	35	24	9	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750283355	18	27087717	GGAAGGGTCAT	G	261	PASS	-	-	-	-	-	Del	-	D	27087717	27087730	10	24	487.948	-	-	1	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	7	2	9	2	32	17	32	17	9	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750286116	18	35439161	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	35439161	35439169	1	35	535.542	-	-	7	1	1	-	-	./.	0	0	0	0	14	11	14	12	0	0	./.	4	6	5	8	32	32	32	32	5	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750286793	18	37541141	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	37541141	37541149	1	20	371.688	-	-	7	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	3	4	3	5	28	30	28	30	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750288234	18	41946964	GA	G	600	PASS	AC110014.1	ENST00000511428	r.?	-	-	Del	intronic	D	41946964	41946974	1	36	536.746	-	-	9	1	1	AC110014.1|ENST00000511428|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110014.1|ENST00000511428|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	5	5	5	7	39	26	39	26	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750289434	18	45515924	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	45515924	45515934	1	12	319.278	-	-	9	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	1	5	1	5	41	39	41	39	1	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750290827	18	49373510	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	49373510	49373519	1	24	424.7	-	-	8	1	1	-	-	./.	0	0	0	0	20	14	20	14	0	0	./.	3	5	7	7	45	32	46	33	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750291940	18	52375675	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	52375675	52375694	2	18	379.515	-	-	9	1	1	-	-	./.	0	0	0	0	14	3	14	3	0	0	./.	5	2	6	3	49	24	49	24	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750292043	18	52613769	GCATTTTAT	G	290	PASS	CCDC68	CCDS11959.1	r.?	-	-	Del	intronic	D	52613769	52613781	8	32	542.164	-	-	1	1	1	CCDC68|CCDS11959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CCDC68|CCDS11959.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	7	3	8	4	36	30	36	30	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750293457	18	56279365	T	TG	780	PASS	ALPK2	CCDS11966.2	r.?	-	-	Ins	intronic	I	56279365	56279373	1	50	692.772	-	-	7	1	1	ALPK2|CCDS11966.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ALPK2|CCDS11966.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	9	6	10	41	25	42	25	6	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750298005	18	68233519	C	CTA	360	PASS	AC013558.1	ENST00000511515	r.?	-	-	Ins	intronic	I	68233519	68233524	2	12	318.074	-	-	2	1	1	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC013558.1|ENST00000511515|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	1	5	7	5	26	30	26	30	7	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750300826	18	75805102	TAGCCTT	TAATA	385	PASS	-	-	-	-	-	Complex	-	DI	75805103	75805108	6	30	0	-	-	0	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	5	0	0	38	29	38	29	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750301482	18	77579969	CTTCT	CTAT	329	PASS	-	-	-	-	-	Complex	-	DI	77579970	77579973	4	15	0	-	-	0	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	4	0	0	37	31	37	31	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750302552	19	2222893	C	CA	360	PASS	DOT1L	CCDS42460.1	r.?	-	-	Ins	intronic	I	2222893	2222903	1	16	312.423	-	-	9	1	1	DOT1L|CCDS42460.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOT1L|CCDS42460.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	3	3	5	5	29	34	30	34	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750303243	19	3396210	C	CTAT	269	PASS	NFIC	CCDS45914.1	r.?	-	-	Ins	intronic	I	3396210	3396214	3	12	262.36	-	-	1	1	1	NFIC|CCDS45914.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFIC|CCDS45914.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	4	2	28	19	28	19	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750303708	19	4326775	T	TC	360	PASS	FSD1	CCDS12127.1	r.?	-	-	Ins	downstream	I	4326775	4326781	1	15	319.648	-	-	5	1	1	FSD1|CCDS12127.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	STAP2|CCDS12128.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	2	7	3	29	32	29	32	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750305293	19	7292103	C	CCT	327	PASS	INSR	CCDS12176.1	r.?	-	-	Ins	intronic	I	7292103	7292104	2	20	364.895	-	-	0	1	1	INSR|CCDS12176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INSR|CCDS12176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	4	3	0	0	35	23	36	24	4	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750306826	19	10045040	TC	T	540	PASS	OLFM2	CCDS12221.1	r.?	-	-	Del	intronic	D	10045040	10045043	1	30	480.676	-	-	2	1	1	OLFM2|CCDS12221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OLFM2|CCDS12221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	5	4	8	4	28	39	28	39	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750306909	19	10183444	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	10183444	10183460	2	10	269.584	-	-	7	1	1	-	-	./.	0	0	0	0	16	3	16	3	0	0	./.	4	1	4	1	40	23	40	23	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750308244	19	13162047	A	AG	300	PASS	NFIX	CCDS45996.1	r.?	-	-	Ins	intronic	I	13162047	13162051	1	12	267.176	-	-	3	1	1	NFIX|CCDS45996.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFIX|CCDS45996.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	3	3	6	33	33	33	33	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750309064	19	14802876	TATTTTCACTGGGGTGCCCTC	T	290	PASS	ZNF333	CCDS12316.1	r.?	-	-	Del	intronic	D	14802876	14802898	20	36	542.781	-	-	1	1	1	ZNF333|CCDS12316.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF333|CCDS12316.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	5	5	4	3	28	24	29	26	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750310004	19	16456670	AACATATTGATATAATT	A	261	PASS	-	-	-	-	-	Del	-	D	16456670	16456690	16	30	487.901	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	4	5	4	4	25	33	25	33	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750312336	19	21533257	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	21533257	21533267	1	12	268.38	-	-	9	1	1	-	-	./.	0	0	0	0	17	6	17	6	0	0	./.	3	2	3	2	30	32	30	32	3	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750313444	19	23794616	TC	T	420	PASS	-	-	-	-	-	Del	-	D	23794616	23794618	1	14	372.12	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	6	1	8	4	21	16	21	16	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750315631	19	32380600	CT	C	600	PASS	-	-	-	-	-	Del	-	D	32380600	32380604	1	27	542.781	-	-	3	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	8	2	9	4	29	33	29	33	9	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750316215	19	33660776	A	AT	300	PASS	WDR88	CCDS12429.1	r.?	-	-	Ins	intronic	I	33660776	33660780	1	6	261.758	-	-	3	1	-	WDR88|CCDS12429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR88|CCDS12429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	5	0	7	0	36	21	37	21	7	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750318820	19	39524091	C	CAAA	447	PASS	FBXO27	CCDS12527.1	r.?	-	-	Ins	upstream	I	39524091	39524096	3	28	469.237	-	-	4	1	1	FBXO27|CCDS12527.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	FBXO27|CCDS12527.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	7	8	7	8	0	0	./.	3	6	3	8	33	43	33	43	3	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750328967	2	3011752	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	3011752	3011753	1	20	366.846	-	-	0	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	4	3	6	44	30	45	31	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750329926	2	5826459	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	5826459	5826479	2	12	267.709	-	-	9	1	-	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	3	2	5	1	34	26	34	26	5	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750332291	2	11811286	TG	T	360	PASS	NTSR2	CCDS1681.1	r.?	-	-	Del	upstream	D	11811286	11811291	1	15	322.696	-	-	4	1	1	NTSR2|CCDS1681.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	NTSR2|CCDS1681.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	12	13	12	0	0	./.	4	2	9	3	36	22	36	22	9	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750332813	2	13583126	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	13583126	13583133	1	14	365.04	-	-	6	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	6	2	6	25	40	28	41	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750338026	2	28631909	AAG	A	300	PASS	FOSL2	CCDS1766.1	r.?	-	-	Del	intronic	D	28631909	28631924	2	10	268.311	-	-	7	1	1	FOSL2|CCDS1766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOSL2|CCDS1766.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	1	4	1	4	38	35	38	35	1	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750346991	2	52373346	T	TTCA	269	PASS	-	-	-	-	-	Ins	-	I	52373346	52373351	3	10	259.882	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	1	4	1	4	33	34	34	35	1	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750347258	2	53370554	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	53370554	53370560	2	12	264.097	-	-	2	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	2	3	3	35	27	35	27	3	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750347393	2	53807867	AT	A	480	PASS	ASB3	ENST00000406053	r.?	-	-	Del	intronic	D	53807867	53807870	1	25	430.261	-	-	2	1	1	ASB3|ENST00000406053|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ASB3|ENST00000406053|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	4	4	4	7	35	25	35	25	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750352425	2	67660331	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	67660331	67660338	1	30	478.626	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	5	4	7	30	35	30	36	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750352427	2	67674897	CATGGA	C	480	PASS	-	-	-	-	-	Del	-	D	67674897	67674904	5	24	429.659	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	3	5	3	5	18	30	18	30	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750352694	2	68392509	A	AAAC	263	PASS	PNO1	CCDS1885.1	r.?	-	-	Ins	intronic	I	68392509	68392518	3	25	403.771	-	-	2	1	-	PNO1|CCDS1885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PNO1|CCDS1885.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	9	0	0	./.	4	4	2	0	39	24	41	25	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750353174	2	69825660	C	CT	360	PASS	AAK1	CCDS1893.2	r.?	-	-	Ins	intronic	I	69825660	69825669	1	12	308.849	-	-	8	1	-	AAK1|CCDS1893.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AAK1|CCDS1893.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	5	1	6	1	40	39	41	39	6	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750353213	2	70008322	GTAACA	G	445	PASS	ANXA4	CCDS1894.1	r.?	-	-	Del	intronic	D	70008322	70008329	5	35	537.827	-	-	1	1	1	ANXA4|CCDS1894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ANXA4|CCDS1894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	6	4	6	4	34	28	34	28	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750354194	2	72620527	AT	A	300	PASS	EXOC6B	CCDS46333.1	r.?	-	-	Del	intronic	D	72620527	72620535	1	10	268.311	-	-	7	1	1	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC6B|CCDS46333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	1	4	4	6	22	34	22	34	4	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750358846	2	86238875	CTCT	CG	300	PASS	-	-	-	-	-	Complex	-	DI	86238876	86238878	3	10	0	-	-	0	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	1	4	0	0	28	28	28	28	1	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750362732	2	100554243	TGGTCAAACATGAGAG	T	290	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100554243	100554259	15	35	537.827	-	-	1	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	4	6	5	6	22	26	22	26	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750364072	2	105580236	AT	A	660	PASS	-	-	-	-	-	Del	-	D	105580236	105580245	1	40	589.201	-	-	8	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	7	4	9	8	23	32	23	32	9	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750364675	2	107269656	CT	C	540	PASS	-	-	-	-	-	Del	-	D	107269656	107269658	1	30	483.442	-	-	1	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	4	5	5	19	20	19	20	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750365995	2	112453909	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	112453909	112453926	2	12	268.913	-	-	8	1	-	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	2	3	28	34	28	34	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750367736	2	117904172	T	TA	449	PASS	-	-	-	-	-	Ins	-	I	117904172	117904178	1	24	423.639	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	5	6	6	24	23	24	24	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750369244	2	122875924	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	122875924	122875932	1	24	425.445	-	-	7	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	3	5	5	25	33	26	34	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750377040	2	146101317	TG	T	600	PASS	-	-	-	-	-	Del	-	D	146101317	146101319	1	32	537.827	-	-	1	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	7	3	8	4	26	20	26	20	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750383621	2	168298187	AG	A	562	PASS	-	-	-	-	-	Del	-	D	168298187	168298189	1	35	537.827	-	-	1	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	4	6	6	7	22	32	22	32	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750386136	2	174779739	G	GCCTA	358	PASS	SP3	CCDS2254.1	r.?	-	-	Ins	intronic	I	174779739	174779746	4	8	359.621	-	-	1	1	1	SP3|CCDS2254.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SP3|CCDS2254.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	7	0	7	0	30	29	30	30	7	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750386772	2	176801253	TC	T	660	PASS	KIAA1715	CCDS33332.1	r.?	-	-	Del	intronic	D	176801253	176801256	1	36	591.609	-	-	2	1	1	KIAA1715|CCDS33332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1715|CCDS33332.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	8	3	11	4	40	15	40	15	11	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750393308	2	196427503	GA	G	389	PASS	-	-	-	-	-	Del	-	D	196427503	196427506	1	18	376.479	-	-	2	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	2	5	3	7	12	34	12	34	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750395991	2	203254855	GCTT	G	656	PASS	BMPR2	CCDS33361.1	r.?	-	-	Del	intronic	D	203254855	203254861	3	56	694.96	-	-	1	1	1	BMPR2|CCDS33361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMPR2|CCDS33361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	6	7	11	8	29	25	29	25	11	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750401460	2	217606631	AGAGACTAT	A	348	PASS	-	-	-	-	-	Del	-	D	217606631	217606642	8	45	644.79	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	8	4	8	32	29	33	30	5	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750401582	2	217941393	G	GCCGC	300	PASS	-	-	-	-	-	Ins	-	I	217941393	217941396	4	6	256.872	-	-	0	1	1	-	-	./.	0	0	0	0	5	16	5	16	0	0	./.	5	0	1	0	31	30	31	30	5	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750401862	2	218874629	CA	C	660	PASS	-	-	-	-	-	Del	-	D	218874629	218874632	1	40	591.609	-	-	2	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	4	7	6	11	20	27	20	27	6	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750401911	2	219010951	TCAAGTAAA	T	290	PASS	-	-	-	-	-	Del	-	D	219010951	219010962	8	35	537.827	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	6	4	8	4	33	21	33	21	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750404812	2	226397514	G	GTATA	358	PASS	KIAA1486	CCDS46529.1	r.?	-	-	Ins	intronic	I	226397514	226397519	4	20	357.815	-	-	2	1	1	KIAA1486|CCDS46529.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1486|CCDS46529.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	3	4	5	4	32	20	32	20	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750404935	2	226795663	GTAC	G	300	PASS	-	-	-	-	-	Del	-	D	226795663	226795668	3	12	268.913	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	2	3	2	4	31	30	31	30	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750407175	2	232510651	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	232510651	232510652	1	15	318.482	-	-	0	1	1	-	-	./.	0	0	0	0	4	12	5	12	0	0	./.	4	2	4	2	27	50	27	50	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750407631	2	233660127	TC	T	900	PASS	GIGYF2	CCDS33401.1	r.?	-	-	Del	intronic	D	233660127	233660131	1	72	806.74	-	-	3	1	1	GIGYF2|CCDS33401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GIGYF2|CCDS33401.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	8	7	10	10	33	32	33	32	10	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750408270	2	235286911	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	235286911	235286921	1	10	265.903	-	-	9	1	1	-	-	./.	0	0	0	0	12	4	12	4	0	0	./.	1	4	1	4	46	36	46	36	1	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750416837	20	15277868	G	GT	420	PASS	MACROD2	CCDS13120.2	r.?	-	-	Ins	intronic	I	15277868	15277871	1	20	376.092	-	-	2	1	1	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACROD2|CCDS13120.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	4	3	7	6	50	33	50	34	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750422530	20	30494462	C	CT	420	PASS	TTLL9	CCDS42863.1	r.?	-	-	Ins	intronic	I	30494462	30494471	1	18	376.092	-	-	8	1	1	TTLL9|CCDS42863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTLL9|CCDS42863.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	4	11	5	0	0	./.	5	2	8	4	50	30	50	31	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750425353	20	37911779	ATGTACGGGGAG	AAT	261	PASS	-	-	-	-	-	Complex	-	DI	37911780	37911790	11	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	6	3	0	0	29	25	29	25	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750426494	20	42105090	TC	T	749	PASS	-	-	-	-	-	Del	-	D	42105090	42105093	1	54	706.284	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	8	5	10	7	39	31	39	31	10	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750427289	20	44327230	A	AC	269	PASS	WFDC13	CCDS13367.1	r.?	-	-	Ins	upstream	I	44327230	44327234	1	12	268.637	-	-	3	1	1	WFDC13|CCDS13367.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	WFDC10B|CCDS13366.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	15	7	15	0	0	./.	3	2	4	2	37	37	38	37	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750427567	20	45033581	AC	A	300	PASS	ELMO2	CCDS13398.1	r.?	-	-	Del	intronic	D	45033581	45033583	1	10	269.842	-	-	1	1	1	ELMO2|CCDS13398.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ELMO2|CCDS13398.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	4	1	6	1	29	16	29	16	6	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750430407	20	51783460	T	TA	360	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Ins	intronic	I	51783460	51783468	1	15	322.365	-	-	7	1	1	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	6	2	46	27	47	27	6	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750431934	20	55327491	CCTGCCTAG	C	406	PASS	-	-	-	-	-	Del	-	D	55327491	55327505	8	60	758.807	-	-	1	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	9	6	9	29	34	29	35	6	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750432174	20	55864549	AATTCTTTGTCAT	A	319	PASS	-	-	-	-	-	Del	-	D	55864549	55864562	12	36	597.625	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	8	6	9	41	52	41	52	6	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750433915	20	61408090	TG	T	329	PASS	-	-	-	-	-	Del	-	D	61408090	61408093	1	12	324.171	-	-	2	1	1	-	-	./.	0	0	0	0	4	12	4	12	0	0	./.	1	5	3	8	17	30	17	30	3	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750433931	20	61436509	A	AC	600	PASS	OGFR	CCDS13504.1	r.?	-	-	Ins	intronic	I	61436509	61436519	1	35	530.05	-	-	9	1	1	OGFR|CCDS13504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OGFR|CCDS13504.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	5	6	6	0	0	./.	6	4	13	5	26	27	26	27	13	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750440002	21	18687874	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	18687874	18687883	1	35	532.859	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	6	4	9	6	29	22	29	22	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750441465	21	22092709	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	22092709	22092711	1	15	322.605	-	-	1	1	1	-	-	./.	0	0	0	0	8	3	9	3	0	0	./.	4	2	5	2	27	6	27	6	5	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750443339	21	26494800	A	AG	360	PASS	-	-	-	-	-	Ins	-	I	26494800	26494805	1	15	322.605	-	-	4	1	1	-	-	./.	0	0	0	0	14	12	14	13	0	0	./.	4	2	8	10	23	39	24	39	8	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750447901	21	37673276	GTACTTCTTGCAGCTCTTTGTGTTATA	G	290	PASS	-	-	-	-	-	Del	-	D	37673276	37673304	26	36	543.696	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	5	5	4	3	31	30	32	32	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750453962	22	19314552	TC	T	300	PASS	HIRA	CCDS13759.1	r.?	-	-	Del	downstream	D	19314552	19314554	1	12	270.405	-	-	1	1	1	HIRA|CCDS13759.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	HIRA|CCDS13759.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	2	4	27	25	27	25	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750455560	22	23381814	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	23381814	23381815	1	14	376.519	-	-	0	1	1	-	-	./.	0	0	0	0	7	12	8	12	0	0	./.	1	6	1	8	28	36	29	36	1	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750456081	22	24948748	A	AC	300	PASS	C22orf13	CCDS33621.1	r.?	-	-	Ins	intronic	I	24948748	24948749	1	10	269.2	-	-	0	1	1	C22orf13|CCDS33621.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C22orf13|CCDS33621.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	13	8	0	0	./.	4	1	6	5	34	34	34	34	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750457344	22	27738801	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	27738801	27738808	1	14	377.724	-	-	6	1	1	-	-	./.	0	0	0	0	7	18	7	18	0	0	./.	1	6	6	8	25	29	25	30	6	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750460858	22	36046447	GTAATGATACATTCGTAAAATGAAA	G	261	PASS	APOL6	CCDS13919.1	r.?	-	-	Del	intronic	D	36046447	36046473	24	28	489.257	-	-	1	1	1	APOL6|CCDS13919.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APOL6|CCDS13919.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	6	2	6	26	24	27	24	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750461002	22	36482547	A	ACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGTTTTTTTTTAGACGGAGTTTCGCTCTATCT	261	PASS	-	-	-	-	-	Ins	-	I	36482547	36482570	68	24	117.786	-	-	0	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	7	2	0	0	41	23	49	25	7	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750468480	3	3924467	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	3924467	3924476	1	21	426.08	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	6	2	9	45	43	45	43	2	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750473662	3	17327884	A	AT	480	PASS	TBC1D5	CCDS33714.1	r.?	-	-	Ins	intronic	I	17327884	17327893	1	16	426.08	-	-	8	1	1	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	9	18	10	0	0	./.	1	7	6	7	37	36	38	36	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750473751	3	17599942	TAA	T	300	PASS	TBC1D5	CCDS33714.1	r.?	-	-	Del	intronic	D	17599942	17599945	2	12	269.31	-	-	2	1	1	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TBC1D5|CCDS33714.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	3	3	21	32	21	32	3	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750475215	3	22196799	AT	A	360	PASS	-	-	-	-	-	Del	-	D	22196799	22196808	1	16	323.172	-	-	8	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	3	3	3	6	27	35	27	35	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750475452	3	23078035	CTA	C	480	PASS	-	-	-	-	-	Del	-	D	23078035	23078041	2	24	428.488	-	-	2	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	5	4	7	27	40	27	40	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750475453	3	23079702	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	23079702	23079712	1	12	262.687	-	-	9	1	-	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	0	1	26	48	26	48	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750475517	3	23231859	CGT	C	300	PASS	-	-	-	-	-	Del	-	D	23231859	23231874	2	12	260.881	-	-	7	1	-	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	2	3	31	29	31	29	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750477212	3	28740319	TTCTA	T	356	PASS	-	-	-	-	-	Del	-	D	28740319	28740329	4	25	430.896	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	4	7	5	37	38	37	38	7	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750478694	3	32856462	GT	G	418	PASS	TRIM71	CCDS43060.1	r.?	-	-	Del	upstream	D	32856462	32856464	1	21	430.294	-	-	1	1	1	TRIM71|CCDS43060.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TRIM71|CCDS43060.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	4	8	4	8	0	0	./.	2	6	4	9	21	34	21	34	4	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750479761	3	35599878	CA	C	360	PASS	-	-	-	-	-	Del	-	D	35599878	35599884	1	16	323.172	-	-	5	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	3	3	5	30	23	30	23	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750480790	3	38942512	G	GA	509	PASS	SCN11A	CCDS33737.1	r.?	-	-	Ins	intronic	I	38942512	38942519	1	30	479.34	-	-	6	1	1	SCN11A|CCDS33737.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCN11A|CCDS33737.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	4	5	5	8	23	31	23	31	5	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750482788	3	45128765	C	CTG	509	PASS	CDCP1	CCDS2727.1	r.?	-	-	Ins	intronic	I	45128765	45128769	2	30	472.717	-	-	1	1	1	CDCP1|CCDS2727.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDCP1|CCDS2727.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	5	6	6	31	26	31	26	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750483949	3	48115552	TG	T	276	PASS	MAP4	CCDS46818.1	r.?	-	-	Del	intronic	D	48115552	48115554	1	6	269.31	-	-	1	1	1	MAP4|CCDS46818.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAP4|CCDS46818.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	0	5	2	5	26	22	26	22	2	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750492915	3	73525596	ATCATCTCCCACCTGGACCCCCCT	A	261	PASS	PDZRN3	CCDS33789.1	r.?	-	-	Del	intronic	D	73525596	73525623	23	30	484.758	-	-	1	1	1	PDZRN3|CCDS33789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDZRN3|CCDS33789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	5	4	3	1	21	15	23	18	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750497931	3	86705179	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	86705179	86705189	1	10	266.3	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	12	17	0	0	./.	1	4	5	6	42	33	43	34	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750498968	3	89441661	C	CA	720	PASS	EPHA3	CCDS2922.1	r.?	-	-	Ins	intronic	I	89441661	89441668	1	48	637.915	-	-	6	1	1	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	7	5	9	6	35	31	35	32	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750501043	3	99535887	TCC	T	840	PASS	C3orf26	CCDS2935.1	r.?	-	-	Del	upstream	D	99535887	99535890	2	63	752.262	-	-	2	1	1	C3orf26|CCDS2935.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	C3orf26|CCDS2935.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	6	8	6	0	0	./.	8	6	9	6	30	46	30	46	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750510829	3	126540538	TTGTC	T	720	PASS	CHCHD6	CCDS3041.1	r.?	-	-	Del	intronic	D	126540538	126540550	4	48	645.742	-	-	2	1	1	CHCHD6|CCDS3041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHCHD6|CCDS3041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	5	7	7	9	31	34	31	34	7	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750512839	3	132638764	TA	T	449	PASS	-	-	-	-	-	Del	-	D	132638764	132638774	1	21	419.457	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	2	7	8	39	31	39	31	7	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750517330	3	145339148	CTTG	C	660	PASS	-	-	-	-	-	Del	-	D	145339148	145339157	3	40	591.278	-	-	2	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	4	7	5	8	26	33	26	33	5	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750529716	3	180569536	C	CTCAT	449	PASS	CCDC39	ENST00000471307	r.?	-	-	Ins	intronic	I	180569536	180569541	4	24	408.62	-	-	1	1	1	CCDC39|ENST00000471307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCDC39|ENST00000471307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	3	5	3	7	20	35	20	35	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750531427	3	184908768	G	GT	360	PASS	EHHADH	CCDS33901.1	r.3493_3494insa	c.?	p.?	Ins	3'UTR variant	I	184908768	184908774	1	15	319.56	-	-	5	1	1	EHHADH|CCDS33901.1|r.3493_3494insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	EHHADH|CCDS33901.1|r.3493_3494insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	4	2	32	25	32	25	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750532227	3	186864325	CGA	C	300	PASS	RPL39L	CCDS3286.1	r.?	-	-	Del	intronic	D	186864325	186864341	2	6	265.698	-	-	7	1	-	RPL39L|CCDS3286.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RPL39L|CCDS3286.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	0	5	0	5	26	34	26	34	0	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750533700	3	190831443	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	190831443	190831450	1	24	426.08	-	-	6	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	5	3	5	3	28	33	28	33	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750533719	3	190876071	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	190876071	190876089	2	12	267.504	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	3	2	4	2	35	34	35	34	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750534340	3	192469820	TA	T	360	PASS	FGF12	CCDS46983.1	r.?	-	-	Del	intronic	D	192469820	192469822	1	15	323.172	-	-	1	1	1	FGF12|CCDS46983.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FGF12|CCDS46983.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	4	2	5	3	41	35	41	35	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750534611	3	193218137	TC	T	540	PASS	ATP13A4	CCDS3304.2	r.?	-	-	Del	intronic	D	193218137	193218140	1	30	483.554	-	-	2	1	1	ATP13A4|CCDS3304.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP13A4|CCDS3304.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	4	5	7	5	37	33	37	33	7	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750534903	3	194144478	C	CA	420	PASS	ATP13A3	CCDS43187.1	r.?	-	-	Ins	intronic	I	194144478	194144483	1	20	370.411	-	-	4	1	1	ATP13A3|CCDS43187.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP13A3|CCDS43187.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	5	9	36	23	37	23	5	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750535246	3	194988274	G	GA	480	PASS	C3orf21	CCDS43188.1	r.?	-	-	Ins	intronic	I	194988274	194988281	1	9	426.08	-	-	6	1	1	C3orf21|CCDS43188.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C3orf21|CCDS43188.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	8	0	12	1	37	29	37	30	12	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750542521	4	16533976	TAATA	T	627	PASS	LDB2	CCDS3420.1	r.?	-	-	Del	intronic	D	16533976	16533985	4	48	645.505	-	-	2	1	1	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LDB2|CCDS3420.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	7	5	7	6	25	43	25	44	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750544081	4	21228482	GA	G	360	PASS	KCNIP4	CCDS43217.1	r.?	-	-	Del	intronic	D	21228482	21228485	1	16	321.85	-	-	2	1	1	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNIP4|CCDS43217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	3	8	7	37	34	37	34	8	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750547412	4	30512309	TA	T	480	PASS	-	-	-	-	-	Del	-	D	30512309	30512318	1	24	430.738	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	5	3	7	26	33	26	33	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750547786	4	31467693	GAC	G	360	PASS	-	-	-	-	-	Del	-	D	31467693	31467703	2	12	321.85	-	-	4	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	1	5	1	7	32	39	32	39	1	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750548848	4	34940057	GTTAC	G	749	PASS	-	-	-	-	-	Del	-	D	34940057	34940066	4	56	699.95	-	-	2	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	7	6	7	9	37	29	37	29	7	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750549333	4	36196498	G	GA	360	PASS	ARAP2	CCDS3441.1	r.?	-	-	Ins	intronic	I	36196498	36196507	1	12	319.441	-	-	8	1	1	ARAP2|CCDS3441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARAP2|CCDS3441.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	5	1	8	5	33	24	33	27	8	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750549987	4	37803039	AG	A	300	PASS	-	-	-	-	-	Del	-	D	37803039	37803041	1	10	268.007	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	1	4	2	5	35	30	35	30	2	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750551765	4	41157622	CCAGA	C	600	PASS	APBB2	CCDS3837.1	r.?	-	-	Del	intronic	D	41157622	41157632	4	36	536.015	-	-	2	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	5	6	5	29	25	29	25	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750551766	4	41157822	ACAGACTAGTATAGGGTTTGGCAGATTTCAGGCCCTC	A	319	PASS	APBB2	CCDS3837.1	r.?	-	-	Del	intronic	D	41157822	41157863	36	42	591.663	-	-	1	1	1	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	APBB2|CCDS3837.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	6	5	3	2	24	31	27	34	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750554555	4	49111357	TC	T	319	PASS	ENSG00000232657	ENST00000417204	r.?	-	-	Del	upstream	D	49111357	49111360	1	10	479.764	-	-	2	1	1	ENSG00000232657|ENST00000417204|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000232657|ENST00000417204|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	37	10	44	10	0	0	./.	0	9	0	1	140	93	162	106	0	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750555048	4	49292164	GA	G	270	PASS	-	-	-	-	-	Del	-	D	49292164	49292166	1	77	861.477	-	-	1	1	1	-	-	./.	0	0	0	0	55	21	55	23	0	0	./.	10	6	13	8	227	271	227	274	13	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750556126	4	54588111	ATG	A	300	PASS	AC110792.1	ENST00000511394	r.?	-	-	Del	intronic	D	54588111	54588130	2	10	263.793	-	-	9	1	-	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC110792.1|ENST00000511394|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	1	4	2	4	34	37	34	37	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750556715	4	56240690	C	CTCAT	329	PASS	SRD5A3	CCDS3498.1	r.?	-	-	Ins	downstream	I	56240690	56240694	4	15	308.604	-	-	0	1	1	SRD5A3|CCDS3498.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SRD5A3|CCDS3498.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	8	14	8	0	0	./.	2	4	4	5	33	27	33	27	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750558064	4	59472833	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	59472833	59472840	1	24	425.32	-	-	6	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	5	3	6	3	28	35	28	35	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750560411	4	65668865	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	65668865	65668873	1	42	584.438	-	-	7	1	1	-	-	./.	0	0	0	0	16	6	17	6	0	0	./.	5	6	7	7	48	44	48	45	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750560944	4	67104766	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	67104766	67104773	1	12	266.201	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	5	3	20	39	21	41	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750561740	4	69114734	T	TTA	300	PASS	TMPRSS11B	CCDS3521.1	r.?	-	-	Ins	upstream	I	69114734	69114751	2	10	263.191	-	-	8	1	1	TMPRSS11B|CCDS3521.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TMPRSS11B|CCDS3521.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	9	7	9	0	0	./.	1	4	2	5	13	21	13	21	2	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750562484	4	71289897	CA	C	540	PASS	-	-	-	-	-	Del	-	D	71289897	71289902	1	28	479.764	-	-	4	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	3	6	4	43	30	43	30	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750565603	4	80061881	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	80061881	80061889	1	25	425.922	-	-	7	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	4	6	9	36	31	36	31	6	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750572303	4	99587783	TC	T	360	PASS	-	-	-	-	-	Del	-	D	99587783	99587789	1	15	323.054	-	-	5	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	2	4	4	4	40	33	40	33	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750573614	4	103453621	T	TA	389	PASS	NFKB1	CCDS3657.1	r.?	-	-	Ins	intronic	I	103453621	103453629	1	20	362.447	-	-	7	1	1	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFKB1|CCDS3657.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	3	4	3	8	22	36	22	36	3	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750574288	4	105950350	CA	C	360	PASS	-	-	-	-	-	Del	-	D	105950350	105950353	1	15	323.054	-	-	2	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	2	4	2	6	36	29	36	29	2	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750574968	4	108540729	T	TA	420	PASS	PAPSS1	CCDS3676.1	r.?	-	-	Ins	intronic	I	108540729	108540739	1	20	372.682	-	-	9	1	1	PAPSS1|CCDS3676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PAPSS1|CCDS3676.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	4	3	6	37	21	38	22	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750576367	4	112398932	GT	G	420	PASS	-	-	-	-	-	Del	-	D	112398932	112398941	1	14	375.692	-	-	8	1	1	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	6	1	9	1	24	7	24	7	9	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750576967	4	113885626	CCTCCAGTTC	CTGAATCT	290	PASS	ANK2	ENST00000506722	r.?	-	-	Complex	intronic	DI	113885627	113885635	9	35	0	-	-	0	1	1	ANK2|ENST00000506722|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ANK2|ENST00000506722|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	4	6	0	0	30	29	30	29	4	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750580735	4	124287965	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	124287965	124287973	1	18	479.162	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	8	1	9	1	41	38	42	39	9	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750581329	4	126109031	AAAGT	A	358	PASS	-	-	-	-	-	Del	-	D	126109031	126109040	4	20	376.896	-	-	2	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	4	3	4	24	30	24	30	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750582855	4	130355533	CT	C	283	PASS	-	-	-	-	-	Del	-	D	130355533	130355543	1	12	266.803	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	3	2	29	36	29	36	3	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750583218	4	131592055	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	131592055	131592062	1	18	372.682	-	-	6	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	5	2	7	2	35	30	35	30	7	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750586129	4	139946581	TTC	T	360	PASS	CCRN4L	CCDS3743.1	r.?	-	-	Del	intronic	D	139946581	139946585	2	16	323.054	-	-	1	1	1	CCRN4L|CCDS3743.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCRN4L|CCDS3743.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	3	3	7	4	32	40	32	40	7	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750586442	4	140587307	A	AGAGG	478	PASS	MGST2	CCDS3749.1	r.?	-	-	Ins	intronic	I	140587307	140587323	4	30	461.702	-	-	3	1	1	MGST2|CCDS3749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MGST2|CCDS3749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	11	13	0	0	./.	4	5	4	6	32	26	32	26	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750588197	4	145756370	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	145756370	145756372	1	60	745.363	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	9	5	9	5	33	18	33	18	9	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750590349	4	152303235	TCTGACTTGCATTTCC	T	290	PASS	-	-	-	-	-	Del	-	D	152303235	152303255	15	27	537.821	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	8	2	8	19	28	19	28	2	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750594252	4	163200910	TG	T	420	PASS	-	-	-	-	-	Del	-	D	163200910	163200913	1	20	376.896	-	-	2	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	3	4	5	5	30	41	30	41	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750596260	4	168298768	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	168298768	168298777	1	35	521.565	-	-	8	1	1	-	-	./.	0	0	0	0	22	21	22	21	0	0	./.	4	6	5	7	31	34	32	34	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750596339	4	168499922	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	168499922	168499931	1	30	478.56	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	5	4	5	32	27	32	27	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750597556	4	171541560	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	171541560	171541567	1	21	425.922	-	-	6	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	6	2	9	3	33	35	33	35	9	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750598475	4	174205188	TG	T	300	PASS	GALNT7	CCDS3815.1	r.?	-	-	Del	intronic	D	174205188	174205190	1	10	269.211	-	-	1	1	1	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT7|CCDS3815.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	4	3	35	37	35	37	4	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750599756	4	177813680	AT	A	600	PASS	-	-	-	-	-	Del	-	D	177813680	177813686	1	35	536.617	-	-	5	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	6	6	8	29	32	29	32	6	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750600931	4	180932383	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	180932383	180932391	1	32	531.8	-	-	7	1	-	-	-	./.	0	0	0	0	12	15	13	15	0	0	./.	3	7	7	11	27	30	28	30	7	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750607843	5	4106517	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	4106517	4106526	1	30	479.818	-	-	8	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	4	5	7	6	29	28	29	28	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750607961	5	4435771	AT	A	360	PASS	-	-	-	-	-	Del	-	D	4435771	4435781	1	12	323.491	-	-	9	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	1	5	4	8	32	27	32	27	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750615744	5	25142789	AT	A	300	PASS	AC106810.1	ENST00000515097	r.?	-	-	Del	intronic	D	25142789	25142799	1	12	267.168	-	-	9	1	1	AC106810.1|ENST00000515097|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC106810.1|ENST00000515097|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	6	2	26	10	26	10	6	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750616119	5	26065053	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	26065053	26065063	1	12	264.759	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	14	0	0	./.	2	3	5	5	37	31	37	31	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750618398	5	31971243	C	CA	660	PASS	PDZD2	CCDS34137.1	r.?	-	-	Ins	intronic	I	31971243	31971249	1	36	585.24	-	-	5	1	1	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDZD2|CCDS34137.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	9	0	0	./.	3	8	4	10	23	48	23	48	4	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750621067	5	39029796	CCTTGGCTAAATCA	C	377	PASS	RICTOR	CCDS34148.1	r.?	-	-	Del	intronic	D	39029796	39029813	13	56	700.897	-	-	1	1	1	RICTOR|CCDS34148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RICTOR|CCDS34148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	6	7	6	6	35	27	35	28	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750623882	5	51410492	TA	T	720	PASS	-	-	-	-	-	Del	-	D	51410492	51410498	1	45	646.982	-	-	5	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	8	4	11	5	37	23	37	23	11	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750623964	5	51753447	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	51753447	51753457	1	20	370.783	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	18	0	0	./.	4	3	5	5	33	33	34	34	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750625813	5	56206150	C	CAGT	449	PASS	C5orf35	CCDS3972.1	r.?	-	-	Ins	intronic	I	56206150	56206156	3	25	416.27	-	-	1	1	1	C5orf35|CCDS3972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C5orf35|ENST00000423328|r.219_220insagu|c.?|p.?|protein_coding:five_prime_UTR:exon:insertion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000667:SO:0001623:SO:0001576	./.	0	0	0	0	14	13	14	13	0	0	./.	4	4	6	4	34	35	34	36	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750627739	5	62284468	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	62284468	62284477	1	30	479.216	-	-	8	1	1	-	-	./.	0	0	0	0	11	19	11	19	0	0	./.	4	5	7	6	34	37	35	39	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750630083	5	68780176	AAGTT	A	269	PASS	-	-	-	-	-	Del	-	D	68780176	68780183	4	12	269.576	-	-	1	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	5	6	24	37	24	37	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750635374	5	84445327	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	84445327	84445342	2	12	262.953	-	-	7	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	2	3	2	3	28	32	28	32	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750636633	5	88030402	T	TG	329	PASS	MEF2C	CCDS47244.1	r.?	-	-	Ins	intronic	I	88030402	88030403	1	12	311.45	-	-	0	1	-	MEF2C|CCDS47244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MEF2C|CCDS47244.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	1	13	1	13	0	0	./.	1	5	1	1	13	26	13	26	2	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750642164	5	105731339	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	105731339	105731355	2	12	268.974	-	-	7	1	-	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	2	3	37	38	37	38	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750643281	5	108673912	G	GA	329	PASS	PJA2	CCDS4099.1	r.?	-	-	Ins	intronic	I	108673912	108673920	1	7	318.674	-	-	7	1	1	PJA2|CCDS4099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PJA2|CCDS4099.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	0	6	3	6	29	42	29	42	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750643628	5	109793278	C	CA	420	PASS	TMEM232	CCDS33841.1	r.?	-	-	Ins	intronic	I	109793278	109793287	1	18	372.59	-	-	8	1	1	TMEM232|CCDS33841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM232|CCDS33841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	5	4	7	24	45	24	45	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750645237	5	114839573	AG	A	600	PASS	-	-	-	-	-	Del	-	D	114839573	114839575	1	36	539.152	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	5	5	7	6	32	28	32	28	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750645953	5	116503681	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	116503681	116503695	2	12	268.974	-	-	6	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	2	3	31	32	31	32	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750648844	5	124832928	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	124832928	124832938	1	10	262.953	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	4	1	4	1	41	47	41	47	4	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750657741	5	151505311	TG	T	360	PASS	-	-	-	-	-	Del	-	D	151505311	151505313	1	12	322.889	-	-	1	1	1	-	-	./.	0	0	0	0	18	11	18	11	0	0	./.	5	1	7	1	31	24	31	24	7	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750659807	5	157366185	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	157366185	157366186	1	12	265.361	-	-	0	1	-	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	2	30	35	32	35	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750662964	5	166485772	GA	G	300	PASS	-	-	-	-	-	Del	-	D	166485772	166485781	1	10	269.576	-	-	8	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	4	3	7	32	35	32	35	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750668035	5	179437414	CAGTGG	CA	409	PASS	RNF130	CCDS4451.1	r.?	-	-	Complex	intronic	DI	179437415	179437419	5	14	0	-	-	0	1	1	RNF130|CCDS4451.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	RNF130|CCDS4451.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	15	3	15	3	0	0	./.	6	1	0	0	41	17	41	17	6	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750668627	6	288564	TCGTATAC	T	435	PASS	DUSP22	CCDS4468.1	r.?	-	-	Del	upstream	D	288564	288573	7	72	807.366	-	-	1	1	1	DUSP22|CCDS4468.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DUSP22|CCDS4468.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	11	13	11	0	0	./.	7	8	7	9	49	38	50	38	8	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750670310	6	4508732	C	CACT	658	PASS	-	-	-	-	-	Ins	-	I	4508732	4508737	3	48	622.774	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	5	7	7	7	38	30	39	30	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750670907	6	6034691	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	6034691	6034701	1	12	265.309	-	-	9	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	3	5	29	27	29	27	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750673948	6	13145899	C	CA	660	PASS	PHACTR1	ENST00000379350	r.?	-	-	Ins	intronic	I	13145899	13145901	1	42	586.329	-	-	1	1	1	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PHACTR1|ENST00000379350|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	6	5	7	33	32	33	32	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750675242	6	16110941	AT	A	360	PASS	-	-	-	-	-	Del	-	D	16110941	16110948	1	15	323.428	-	-	6	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	4	3	5	29	28	29	28	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750679486	6	26118129	AAAACAATTAGTGATTCTCTAG	A	261	PASS	HIST1H2BC	CCDS4584.1	r.?	-	-	Del	intronic	D	26118129	26118177	21	30	485.142	-	-	2	1	1	HIST1H2BC|CCDS4584.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	HIST1H2BC|CCDS4584.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	5	2	4	18	23	20	24	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750680477	6	28645110	CT	C	540	PASS	-	-	-	-	-	Del	-	D	28645110	28645119	1	18	485.142	-	-	8	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	8	1	9	3	29	20	29	20	9	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750683183	6	32761957	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	32761957	32761964	1	40	635.417	-	-	6	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	9	5	10	28	42	29	42	5	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750684378	6	35586753	G	GT	449	PASS	FKBP5	CCDS4808.1	r.?	-	-	Ins	intronic	I	35586753	35586755	1	24	413.778	-	-	1	1	1	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FKBP5|CCDS4808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	3	5	5	5	27	35	27	37	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750685957	6	39305063	T	TCTTC	389	PASS	KIF6	CCDS4844.1	r.?	-	-	Ins	intronic	I	39305063	39305084	4	8	360.475	-	-	5	1	1	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIF6|CCDS4844.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	14	7	0	0	./.	7	0	11	3	34	19	35	19	11	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750687268	6	43111251	A	AGG	420	PASS	PTK7	CCDS4884.1	r.2365_2366insgg	c.2144_2145insGG	p.Y715fs*1	Ins	frameshift	I	43111251	43111252	2	20	368.904	-	-	0	1	1	PTK7|CCDS4884.1|r.2365_2366insgg|c.2144_2145insGG|p.Y715fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	PTK7|CCDS4884.1|r.2365_2366insgg|c.2144_2145insGG|p.Y715fs*1|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	3	16	3	16	0	0	./.	4	3	6	3	29	29	29	30	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750688262	6	46004048	T	TG	269	PASS	CLIC5	CCDS47438.1	r.?	-	-	Ins	intronic	I	46004048	46004049	1	10	257.482	-	-	0	1	-	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	8	2	39	25	40	26	8	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750689672	6	50210314	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	50210314	50210321	1	36	579.104	-	-	6	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	8	3	11	3	37	32	38	32	11	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750689872	6	50831430	T	TAC	660	PASS	-	-	-	-	-	Ins	-	I	50831430	50831431	2	42	578.502	-	-	0	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	5	6	8	6	36	28	36	28	8	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750691121	6	54232004	CG	C	420	PASS	TINAG	CCDS4955.1	r.?	-	-	Del	intronic	D	54232004	54232006	1	20	377.333	-	-	1	1	1	TINAG|CCDS4955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TINAG|CCDS4955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	8	16	8	0	0	./.	4	3	7	4	42	27	42	27	7	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750693971	6	62649913	CATG	C	420	PASS	KHDRBS2	CCDS4963.1	r.?	-	-	Del	intronic	D	62649913	62649922	3	14	377.333	-	-	2	1	1	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	6	1	7	1	24	30	24	30	7	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750700903	6	81937939	AT	A	300	PASS	-	-	-	-	-	Del	-	D	81937939	81937944	1	12	269.523	-	-	4	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	3	2	4	4	23	34	23	34	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750703145	6	88911414	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	88911414	88911423	1	24	424.615	-	-	8	1	-	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	3	5	3	10	28	42	28	42	3	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750704008	6	91281832	G	GA	300	PASS	MAP3K7	CCDS5028.1	r.?	-	-	Ins	intronic	I	91281832	91281842	1	12	266.513	-	-	9	1	1	MAP3K7|CCDS5028.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAP3K7|CCDS5028.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	2	3	2	3	26	27	26	27	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750705529	6	96285445	AGCCGCT	A	319	PASS	-	-	-	-	-	Del	-	D	96285445	96285452	6	42	592.951	-	-	1	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	6	4	6	31	36	32	36	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750706554	6	99535179	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	99535179	99535180	1	32	533.026	-	-	0	1	1	-	-	./.	0	0	0	0	12	9	12	10	0	0	./.	3	7	4	7	34	30	34	31	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750706957	6	100512008	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	100512008	100512015	1	21	425.819	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	2	7	3	35	51	35	51	7	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750710538	6	110503563	ATTGTACAT	A	348	PASS	CDC40	CCDS5081.1	r.?	-	-	Del	intronic	D	110503563	110503576	8	40	646.254	-	-	1	1	1	CDC40|CCDS5081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC40|CCDS5081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	9	3	11	3	36	36	36	36	11	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750710604	6	110792062	G	GC	360	PASS	SLC22A16	CCDS5084.1	r.?	-	-	Ins	intronic	I	110792062	110792067	1	16	319.816	-	-	4	1	1	SLC22A16|CCDS5084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC22A16|CCDS5084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	3	4	3	24	24	24	25	4	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750713005	6	118002001	A	AT	300	PASS	NUS1	CCDS5118.1	r.?	-	-	Ins	intronic	I	118002001	118002010	1	10	266.513	-	-	8	1	1	NUS1|CCDS5118.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUS1|CCDS5118.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	12	0	0	./.	1	4	1	4	30	30	30	30	1	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750715319	6	124271170	AT	A	420	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Del	intronic	D	124271170	124271178	1	20	377.333	-	-	7	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	4	3	8	3	33	31	33	31	8	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750715826	6	125905991	AGAAAAGCAACTCTCT	A	319	PASS	-	-	-	-	-	Del	-	D	125905991	125906010	15	22	592.951	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	1	10	2	10	25	47	26	47	3	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750719129	6	136784055	GTGA	G	387	PASS	MAP7	CCDS5178.1	r.?	-	-	Del	intronic	D	136784055	136784059	3	9	428.829	-	-	1	1	1	MAP7|CCDS5178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP7|CCDS5178.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	0	8	0	10	13	31	13	31	0	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750726877	6	158720689	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	158720689	158720691	1	12	265.309	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	2	3	4	5	25	26	26	26	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750727146	6	159226510	AT	A	480	PASS	EZR	CCDS5258.1	r.?	-	-	Del	intronic	D	159226510	159226512	1	25	431.237	-	-	1	1	1	EZR|CCDS5258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EZR|CCDS5258.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	4	4	6	4	31	19	31	19	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750729318	6	164992481	GCC	G	360	PASS	ENSG00000237744	ENST00000425920	r.?	-	-	Del	intronic	D	164992481	164992484	2	12	323.428	-	-	2	1	1	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	2	11	2	0	0	./.	5	1	8	1	28	2	28	2	8	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750734068	7	6159342	G	GT	300	PASS	USP42	CCDS47535.1	r.?	-	-	Ins	intronic	I	6159342	6159352	1	12	266.668	-	-	9	1	1	USP42|CCDS47535.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USP42|CCDS47535.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	2	3	2	3	18	34	18	34	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750734589	7	7384638	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	7384638	7384655	2	12	269.679	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	2	2	30	18	30	18	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750735664	7	10109074	GA	G	480	PASS	-	-	-	-	-	Del	-	D	10109074	10109083	1	24	431.486	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	6	5	37	45	37	45	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750736163	7	11366090	AT	A	300	PASS	-	-	-	-	-	Del	-	D	11366090	11366095	1	10	269.679	-	-	4	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	1	5	3	36	24	36	24	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750736378	7	12105073	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	12105073	12105077	1	25	426.669	-	-	3	1	1	-	-	./.	0	0	0	0	20	18	21	18	0	0	./.	4	4	4	4	27	35	27	36	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750736547	7	12528554	G	GGT	294	PASS	-	-	-	-	-	Ins	-	I	12528554	12528555	2	21	390.546	-	-	0	1	1	-	-	./.	0	0	0	0	13	4	14	4	0	0	./.	2	6	0	0	26	25	26	26	2	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750737966	7	16504637	CT	C	300	PASS	SOSTDC1	CCDS5360.1	r.?	-	-	Del	intronic	D	16504637	16504644	1	10	269.679	-	-	6	1	1	SOSTDC1|CCDS5360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOSTDC1|CCDS5360.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	2	7	20	38	20	38	2	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750738311	7	17447753	GT	G	269	PASS	-	-	-	-	-	Del	-	D	17447753	17447755	1	12	268.474	-	-	1	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	5	7	32	32	32	32	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750738511	7	17962916	C	CTTG	447	PASS	SNX13	CCDS47551.1	r.?	-	-	Ins	intronic	I	17962916	17962921	3	30	469.166	-	-	1	1	1	SNX13|CCDS47551.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNX13|CCDS47551.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	10	20	10	0	0	./.	4	5	5	6	40	38	40	39	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750742042	7	27608540	A	AAT	300	PASS	HIBADH	CCDS5414.1	r.?	-	-	Ins	intronic	I	27608540	27608541	2	6	253.423	-	-	0	1	1	HIBADH|CCDS5414.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HIBADH|CCDS5414.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	0	5	0	1	28	29	28	29	0	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750743679	7	32213648	C	CT	360	PASS	PDE1C	ENST00000396193	r.?	-	-	Ins	intronic	I	32213648	32213656	1	15	320.002	-	-	7	1	1	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1C|ENST00000396193|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	10	14	0	0	./.	2	4	3	7	35	41	36	41	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750749086	7	46695536	G	GC	300	PASS	-	-	-	-	-	Ins	-	I	46695536	46695539	1	12	266.668	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	2	6	23	34	23	35	2	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750754905	7	63458856	ATGCTGTGCAAAGGATCCACAGCAAGGAAGG	A	261	PASS	-	-	-	-	-	Del	-	D	63458856	63458888	30	30	484.819	-	-	1	1	1	-	-	./.	0	0	0	0	2	17	2	17	0	0	./.	4	5	2	3	26	40	28	42	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750758295	7	70060532	G	GT	389	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	70060532	70060534	1	20	370.927	-	-	1	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	4	4	5	28	31	31	33	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750760817	7	75961669	TGTGTCCACAAATAACGGAAGATTGGGCTTTTCCCAGCTCCATCATTCGCTAAGCAATCTTGGGGACAAGCCGCTTCATTTCTCTGGGCTTTGGTTTTCTTATCTGCAAAATGGGGATTTCTGCTTCTTTCATAAGGTAATATACAGGTATATCAGACAAATAAGAAAGTCTTTTTTTGTTCTTTTTGAGACATGGTCTTACTCTGTTTCCCAAGCTGAAGTGCAGAGGCATGATCACACCTCACTGCAGCCTCAAACTACTGGGCTCAAGCAATCCTCCCACCTCAATCTCCAGAGTACCTGGGACTACAGGTGTGCACCACCATGCATGGCTGATTTCTTTTTTTTTTTTTTTTGGAGACAGAGTTTCAAAAAGACCTGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCATGATGTCGGCTCACTGCAACCTCCCCCCAAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCTGGCTAGTTTTTGTATTTTTAGTAGAGACAGCGTTTTGCCATGTTGGCCAGGATGGTCTCAAACTCCTGGCCTCAAGTGATCCACCCGCCTCAGTCTATGGCTGATTTATTTATTTCTTTATTTAGAGATGGGGTCTCACTATATCAATCCGCTGGAAGTGCAGTGGCACTATCTTGGCTCACTGCAACCTCAGCCTCCCAGGGCTTCAAGCAATCCTACCTTAGCCTCCTGAGTGGCTGGGACTAAGGCACATGCCACCACACCCAGCTAATTTTTGTATTTTTCTGTAGAGACAAGGTCTTGCCATGTTGCCCAGGCTGGCCTTGAACTCCTGGCCTCAAGTGATCCACCCACCTTAGCCTCCCAAAGTGTTAGGATTACAGGTGTGAGCCACTGCATCCAGCCATTTAAAAATTTTTAGTAGAGACAAGGTCTCACTATGTTGCCCAGGCTGGTCTTGAACCCTTAGTTCAAGTGATCCTCCCACCTTGGCCGCTCAGAGTGCTGGGATTACAGGTGACAGCCATTGTGCCCAGCAAAGTCTTCTTGAAAAA	T	261	PASS	YWHAG	CCDS5584.1	r.?	-	-	Del	intronic	D	75961669	75962738	1066	18	484.217	-	-	1	1	1	YWHAG|CCDS5584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YWHAG|CCDS5584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	1	8	0	0	17	14	18	22	1	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750763157	7	82111247	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	82111247	82111249	1	6	265.464	-	-	1	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	5	0	5	0	24	28	24	29	5	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750763657	7	83556152	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	83556152	83556157	1	36	585.466	-	-	4	1	1	-	-	./.	0	0	0	0	23	17	23	19	0	0	./.	3	8	6	12	30	36	30	36	6	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750766468	7	92040598	CCA	C	540	PASS	-	-	-	-	-	Del	-	D	92040598	92040601	2	28	485.422	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	6	6	6	28	36	28	36	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750771206	7	104957146	A	AC	420	PASS	SRPK2	CCDS34724.1	r.?	-	-	Ins	intronic	I	104957146	104957148	1	18	373.336	-	-	1	1	1	SRPK2|CCDS34724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SRPK2|CCDS34724.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	6	8	6	0	0	./.	5	2	6	3	31	26	31	26	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750772701	7	109040795	TC	T	600	PASS	-	-	-	-	-	Del	-	D	109040795	109040798	1	36	539.357	-	-	2	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	5	5	5	5	29	31	29	31	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750774819	7	116426017	TG	T	660	PASS	MET	CCDS43636.1	r.?	-	-	Del	intronic	D	116426017	116426019	1	40	593.293	-	-	1	1	1	MET|CCDS43636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MET|CCDS43636.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	4	7	6	7	30	31	30	31	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750775752	7	119358668	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	119358668	119358677	1	20	373.336	-	-	8	1	1	-	-	./.	0	0	0	0	18	12	18	12	0	0	./.	3	4	4	6	20	33	20	33	4	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750775852	7	119645821	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	119645821	119645830	1	20	373.336	-	-	8	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	3	4	3	7	34	33	35	34	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750777788	7	125568492	AT	A	480	PASS	-	-	-	-	-	Del	-	D	125568492	125568502	1	25	431.486	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	4	4	5	26	33	26	33	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750779786	7	130562617	CAG	C	329	PASS	MIR29B1	ENST00000385015	r.?	-	-	Del	upstream	D	130562617	130562622	2	12	323.012	-	-	2	1	1	MIR29B1|ENST00000385015|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR29B1|ENST00000385015|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	11	8	11	8	0	0	./.	5	1	6	2	36	22	36	22	6	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750785075	7	145181658	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	145181658	145181668	1	36	586.67	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	8	3	9	6	35	25	35	25	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750785349	7	146328016	G	GA	540	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	146328016	146328025	1	30	480.003	-	-	8	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	16	16	0	0	./.	5	4	6	6	34	50	34	50	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750789474	7	155806534	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	155806534	155806543	1	24	426.669	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	5	4	5	24	39	24	39	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750797246	8	17604253	GTATAGAATACTA	G	377	PASS	MTUS1	CCDS43717.1	r.?	-	-	Del	intronic	D	17604253	17604267	12	56	701.068	-	-	1	1	1	MTUS1|CCDS43717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTUS1|CCDS43717.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	7	6	7	6	20	27	21	27	8	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750798786	8	22488047	TG	T	420	PASS	BIN3	CCDS47825.1	r.301delC	c.204delC	p.N69fs*11	Del	frameshift	D	22488047	22488050	1	18	375.692	-	-	2	1	1	BIN3|CCDS47825.1|r.301delC|c.204delC|p.N69fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	BIN3|CCDS47825.1|r.301delC|c.204delC|p.N69fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	12	12	12	12	0	0	./.	5	2	8	3	25	20	25	20	8	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750801596	8	30129493	ATTTTTTTTTTTTTT	A	319	PASS	-	-	-	-	-	Del	-	D	30129493	30129525	14	40	578.16	-	-	2	1	-	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	4	7	4	8	13	19	14	19	5	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750805490	8	42174525	TTAA	T	1018	PASS	IKBKB	CCDS6128.1	r.?	-	-	Del	intronic	D	42174525	42174530	3	100	964.689	-	-	1	1	1	IKBKB|CCDS6128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IKBKB|CCDS6128.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	9	9	10	11	39	40	39	40	10	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750807844	8	52326964	A	AC	300	PASS	PXDNL	CCDS47855.1	r.?	-	-	Ins	intronic	I	52326964	52326965	1	10	266.631	-	-	0	1	1	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PXDNL|CCDS47855.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	1	5	2	35	15	35	15	5	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750811454	8	62087930	TC	T	776	PASS	-	-	-	-	-	Del	-	D	62087930	62087932	1	60	805.312	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	4	11	9	14	37	41	37	41	9	14	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750814125	8	70987159	C	CT	420	PASS	PRDM14	CCDS6206.1	r.?	-	-	Ins	upstream	I	70987159	70987164	1	20	373.284	-	-	4	1	1	PRDM14|CCDS6206.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	PRDM14|CCDS6206.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	9	6	9	6	0	0	./.	3	4	5	4	27	27	28	28	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750815607	8	75211792	TC	T	360	PASS	JPH1	CCDS6217.1	r.?	-	-	Del	intronic	D	75211792	75211794	1	15	323.57	-	-	1	1	1	JPH1|CCDS6217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	JPH1|CCDS6217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	20	8	20	0	0	./.	2	4	3	4	35	41	35	41	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750817708	8	81666368	G	GT	300	PASS	ZNF704	CCDS34913.1	r.?	-	-	Ins	intronic	I	81666368	81666378	1	12	263.621	-	-	9	1	1	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	22	11	22	0	0	./.	3	2	3	2	29	37	29	37	3	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750817873	8	82372176	AT	A	840	PASS	FABP9	CCDS34914.1	r.?	-	-	Del	intronic	D	82372176	82372178	1	48	754.394	-	-	1	1	1	FABP9|CCDS34914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FABP9|CCDS34914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	3	11	8	14	48	48	48	48	8	14	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750818570	8	84220194	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	84220194	84220203	1	12	266.631	-	-	8	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	2	3	3	4	46	55	46	55	3	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750819708	8	87368272	AATGG	A	329	PASS	-	-	-	-	-	Del	-	D	87368272	87368279	4	15	321.162	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	4	2	4	18	65	18	65	2	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750821054	8	90708207	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	90708207	90708224	2	16	321.162	-	-	8	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	3	3	3	3	50	52	50	52	3	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750825122	8	100670667	CT	C	840	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100670667	100670675	1	63	754.394	-	-	7	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	6	8	7	9	27	39	27	39	7	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750825763	8	102171993	AT	A	600	PASS	-	-	-	-	-	Del	-	D	102171993	102171998	1	35	534.466	-	-	4	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	4	6	4	9	26	46	26	46	4	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750826621	8	104310294	CTGTTTCATAGGAGGG	CCT	435	PASS	FZD6	CCDS6298.1	r.?	-	-	Complex	upstream	DI	104310295	104310309	15	70	0	-	-	0	1	1	FZD6|CCDS6298.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	FZD6|CCDS6298.1|r.?|-|-|protein_coding:indel:2KB_upstream_variant|SO:0000010:SO:1000032:SO:0001636	./.	0	0	0	0	9	14	9	14	0	0	./.	9	6	0	0	36	27	36	28	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750828720	8	110513748	AC	A	360	PASS	PKHD1L1	CCDS47911.1	r.?	-	-	Del	intronic	D	110513748	110513750	1	16	323.57	-	-	1	1	1	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKHD1L1|CCDS47911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	3	5	3	25	26	25	26	5	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750829134	8	111691983	AG	A	420	PASS	-	-	-	-	-	Del	-	D	111691983	111691985	1	20	376.896	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	4	3	6	42	54	42	54	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750829869	8	113404893	T	TG	420	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	113404893	113404894	1	18	373.284	-	-	0	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	2	7	5	71	59	71	60	7	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750830227	8	114050020	C	CA	360	PASS	CSMD3	CCDS6315.1	r.?	-	-	Ins	intronic	I	114050020	114050030	1	7	310.324	-	-	9	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	15	21	0	0	./.	0	6	0	7	75	87	75	87	0	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750830713	8	114999606	GA	G	478	PASS	-	-	-	-	-	Del	-	D	114999606	114999615	1	24	481.742	-	-	8	1	1	-	-	./.	0	0	0	0	13	20	13	20	0	0	./.	2	7	4	8	87	107	87	107	4	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750830817	8	115240931	AT	A	600	PASS	-	-	-	-	-	Del	-	D	115240931	115240941	1	32	539.283	-	-	9	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	7	3	9	6	97	78	97	78	9	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750830819	8	115241182	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	115241182	115241189	1	13	638.711	-	-	6	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	0	12	9	14	100	89	100	90	9	14	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750831094	8	115995337	AG	A	389	PASS	-	-	-	-	-	Del	-	D	115995337	115995340	1	14	377.498	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	6	1	9	2	88	86	88	86	9	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750831232	8	116311426	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	116311426	116311427	1	24	424.804	-	-	0	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	5	7	6	98	80	99	80	7	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750831914	8	117415814	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	117415814	117415815	1	12	263.621	-	-	0	1	-	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	3	2	5	6	80	64	84	67	5	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750832693	8	118866686	AAC	A	300	PASS	EXT1	CCDS6324.1	r.?	-	-	Del	intronic	D	118866686	118866702	2	12	269.641	-	-	7	1	-	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	3	2	4	5	81	69	81	69	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750832705	8	118875652	T	TG	480	PASS	EXT1	CCDS6324.1	r.?	-	-	Ins	intronic	I	118875652	118875653	1	16	417.579	-	-	0	1	1	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EXT1|CCDS6324.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	7	6	8	0	0	./.	1	7	4	9	90	95	90	96	4	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750833476	8	120272527	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	120272527	120272535	1	20	372.682	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	3	5	4	91	110	91	111	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750835663	8	124109269	T	TA	4020	PASS	WDR67	CCDS6338.1	r.?	-	-	Ins	intronic	I	124109269	124109278	1	1190	3557.21	-	-	8	1	1	WDR67|CCDS6338.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WDR67|CCDS6338.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	34	33	41	38	75	73	75	73	41	38	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750836304	8	125014890	G	GT	449	PASS	FER1L6	CCDS43767.1	r.?	-	-	Ins	intronic	I	125014890	125014895	1	24	417.579	-	-	4	1	1	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FER1L6|CCDS43767.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	3	5	3	8	62	94	62	94	3	8	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750837487	8	126821916	TCTGTACTTCACCTCCGATTC	T	319	PASS	-	-	-	-	-	Del	-	D	126821916	126821943	20	42	593.211	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	6	5	6	5	77	97	77	97	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750837875	8	127575321	CTTACCTGCACCTCTTATT	CTAGACT	261	PASS	FAM84B	CCDS6358.1	r.?	-	-	Complex	upstream	DI	127575322	127575339	18	28	0	-	-	0	1	1	FAM84B|CCDS6358.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	FAM84B|CCDS6358.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	13	10	13	10	0	0	./.	3	6	0	0	45	104	45	105	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750838317	8	128416091	GCTTTACTTTTCT	G	3480	PASS	AC018714.1	ENST00000502082	r.?	-	-	Del	intronic	D	128416091	128416104	12	3717	6461.16	-	-	1	1	1	AC018714.1|ENST00000502082|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC018714.1|ENST00000502082|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	62	58	62	60	99	92	102	93	65	61	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750838438	8	128625438	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	128625438	128625446	1	10	266.631	-	-	7	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	1	4	1	9	79	96	81	96	1	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750839202	8	130070661	CGT	C	420	PASS	-	-	-	-	-	Del	-	D	130070661	130070678	2	18	376.294	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	2	5	6	5	55	75	55	75	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750841223	8	134825855	TC	T	480	PASS	-	-	-	-	-	Del	-	D	134825855	134825858	1	24	431.426	-	-	2	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	5	3	6	4	53	51	53	51	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750842045	8	136964130	TA	T	420	PASS	-	-	-	-	-	Del	-	D	136964130	136964132	1	14	371.477	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	1	6	4	7	51	71	51	71	4	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750842370	8	137655437	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	137655437	137655446	1	15	319.957	-	-	8	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	2	4	3	6	55	69	55	70	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750849984	9	13971773	GC	G	540	PASS	-	-	-	-	-	Del	-	D	13971773	13971775	1	28	486.679	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	3	6	4	31	22	31	22	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750850296	9	15055294	T	TG	600	PASS	-	-	-	-	-	Ins	-	I	15055294	15055299	1	32	534.734	-	-	4	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	7	3	11	6	30	26	30	26	11	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750855790	9	32773025	A	AT	329	PASS	-	-	-	-	-	Ins	-	I	32773025	32773033	1	12	312.412	-	-	7	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	1	5	3	5	29	30	29	30	3	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750861343	9	68434882	G	GA	403	PASS	-	-	-	-	-	Ins	-	I	68434882	68434883	1	18	905.435	-	-	0	1	1	-	-	./.	0	0	0	0	18	36	18	37	0	0	./.	0	17	0	17	37	154	38	154	0	17	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750862822	9	71574990	G	GA	360	PASS	PIP5K1B	CCDS6624.1	r.?	-	-	Ins	intronic	I	71574990	71574995	1	15	320.238	-	-	4	1	1	PIP5K1B|CCDS6624.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIP5K1B|CCDS6624.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	4	6	5	36	24	36	24	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750864654	9	76089911	AAGGTCTCCAGCACTTGCGGGTGGAGACAG	A	290	PASS	-	-	-	-	-	Del	-	D	76089911	76089945	29	32	538.346	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	7	3	4	28	38	28	41	3	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750864951	9	76894726	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	76894726	76894734	1	28	480.057	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	6	3	8	3	33	32	35	33	8	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750865854	9	79245833	TCTCTAGTCTACTGGGATCTTGCTGAG	T	479	PASS	PRUNE2	CCDS47982.1	r.?	-	-	Del	intronic	D	79245833	79245862	26	84	919.283	-	-	1	1	1	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRUNE2|CCDS47982.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	6	11	4	9	31	40	33	42	6	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750866487	9	81148222	GT	G	720	PASS	-	-	-	-	-	Del	-	D	81148222	81148227	1	40	648.906	-	-	4	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	3	9	4	9	27	43	27	43	4	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750867669	9	84363214	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	84363214	84363219	2	12	269.173	-	-	4	1	1	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	2	3	2	3	29	23	29	23	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750869228	9	89227535	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	89227535	89227545	1	40	640.477	-	-	9	1	1	-	-	./.	0	0	0	0	12	19	12	19	0	0	./.	3	9	3	11	36	47	36	48	3	11	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750870545	9	93295605	CG	C	360	PASS	-	-	-	-	-	Del	-	D	93295605	93295607	1	15	324.453	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	2	6	6	39	31	39	31	6	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750870651	9	93566872	AAAC	A	600	PASS	SYK	CCDS6688.1	r.?	-	-	Del	intronic	D	93566872	93566889	3	32	540.755	-	-	5	1	1	SYK|CCDS6688.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYK|CCDS6688.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	14	20	14	0	0	./.	3	7	4	9	35	36	35	36	4	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750871082	9	94693901	T	TA	360	PASS	ROR2	CCDS6691.1	r.?	-	-	Ins	intronic	I	94693901	94693911	1	16	315.422	-	-	9	1	1	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROR2|CCDS6691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	21	9	21	0	0	./.	3	3	4	4	30	33	30	33	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750875159	9	106246164	GA	G	540	PASS	-	-	-	-	-	Del	-	D	106246164	106246166	1	28	486.679	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	6	3	6	4	38	39	38	39	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750876149	9	108842299	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	108842299	108842304	1	15	319.636	-	-	4	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	2	4	2	6	23	30	23	30	2	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750876348	9	109591636	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	109591636	109591637	1	18	373.11	-	-	0	1	1	-	-	./.	0	0	0	0	13	12	14	12	0	0	./.	2	5	6	7	26	25	26	25	6	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750878812	9	115395203	TA	T	300	PASS	KIAA1958	CCDS35108.1	r.?	-	-	Del	intronic	D	115395203	115395211	1	6	270.377	-	-	7	1	1	KIAA1958|CCDS35108.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1958|CCDS35108.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	5	0	1	0	26	21	26	21	5	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750879724	9	117962845	C	CT	540	PASS	DEC1	CCDS6812.1	r.?	-	-	Ins	intronic	I	117962845	117962852	1	24	481.261	-	-	6	1	1	DEC1|CCDS6812.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	DEC1|CCDS6812.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	2	13	4	37	25	37	26	13	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750881456	9	123334360	GAAC	G	629	PASS	CDK5RAP2	CCDS6823.1	r.?	-	-	Del	intronic	D	123334360	123334368	3	40	590.616	-	-	2	1	1	CDK5RAP2|CCDS6823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDK5RAP2|CCDS6823.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	7	4	10	4	40	28	40	28	10	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750881980	9	124740120	AT	A	420	PASS	TTLL11	CCDS48012.1	r.?	-	-	Del	intronic	D	124740120	124740126	1	20	378.528	-	-	5	1	1	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	4	3	5	4	25	23	25	23	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750884540	9	131088651	C	CAGGG	480	PASS	TRUB2	CCDS6897.1	r.?	-	-	Ins	upstream	I	131088651	131088659	4	16	410.328	-	-	1	1	1	TRUB2|CCDS6897.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	COQ4|ENST00000372875|r.900_901insaggg|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	7	4	7	4	0	0	./.	1	7	2	10	33	32	33	32	2	10	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750885039	9	131961014	TAATGA	T	865	PASS	-	-	-	-	-	Del	-	D	131961014	131961020	5	90	913.864	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	9	8	10	9	28	33	28	33	10	9	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750885851	9	133522396	AG	A	660	PASS	-	-	-	-	-	Del	-	D	133522396	133522398	1	42	594.228	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	6	5	7	7	30	25	30	25	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750886367	9	134532356	GAGAGA	G	1163	PASS	RAPGEF1	CCDS48048.1	r.?	-	-	Del	intronic	D	134532356	134532367	5	156	1239.52	-	-	2	1	1	RAPGEF1|CCDS48048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF1|CCDS48048.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	11	12	14	12	46	49	46	49	14	12	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750890011	X	5439855	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	5439855	5439865	1	16	321.047	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	3	3	4	3	40	39	41	39	4	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750890346	X	6233434	T	TGCTA	360	PASS	-	-	-	-	-	Ins	-	I	6233434	6233442	4	7	310.21	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	0	7	0	39	21	42	21	7	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750893203	X	16269124	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	16269124	16269134	1	12	266.335	-	-	9	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	3	30	32	30	32	2	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750897975	X	32948573	TAAAAG	T	329	PASS	DMD	CCDS14233.1	r.?	-	-	Del	intronic	D	32948573	32948581	5	12	324.659	-	-	1	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	1	5	3	6	30	19	30	19	3	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750898017	X	33048409	G	GTA	360	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	33048409	33048413	2	15	317.434	-	-	1	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	4	4	4	32	28	32	28	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750898934	X	36584905	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	36584905	36584912	1	20	374.554	-	-	6	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	4	3	4	3	41	16	41	16	4	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750901124	X	44826553	CCTTTGGCTACCTCCTTCTCCTCT	C	261	PASS	KDM6A	CCDS14265.1	r.?	-	-	Del	intronic	D	44826553	44826583	23	28	486.988	-	-	1	1	1	KDM6A|CCDS14265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KDM6A|CCDS14265.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	6	3	5	2	35	19	36	20	6	3	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750903180	X	52622485	CT	C	480	PASS	-	-	-	-	-	Del	-	D	52622485	52622491	1	25	432.879	-	-	5	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	4	5	5	40	37	40	37	5	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750907334	X	73304961	CA	C	538	PASS	-	-	-	-	-	Del	-	D	73304961	73304965	1	35	541.098	-	-	3	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	6	4	7	5	30	29	30	29	7	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750908802	X	79335686	TGTCTAGG	T	406	PASS	-	-	-	-	-	Del	-	D	79335686	79335697	7	64	756.936	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	7	7	7	6	31	41	31	42	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750908972	X	79845625	TG	T	387	PASS	-	-	-	-	-	Del	-	D	79845625	79845634	1	25	432.277	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	4	6	5	25	31	25	31	6	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750909701	X	82322046	GC	G	360	PASS	-	-	-	-	-	Del	-	D	82322046	82322051	1	16	324.057	-	-	4	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	4	5	35	34	35	34	4	5	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750909932	X	83409208	T	TA	300	PASS	RPS6KA6	CCDS14451.1	r.?	-	-	Ins	intronic	I	83409208	83409210	1	12	267.539	-	-	1	1	1	RPS6KA6|CCDS14451.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPS6KA6|CCDS14451.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	17	12	0	0	./.	3	2	5	2	22	20	24	22	5	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750911338	X	88015959	TG	T	780	PASS	-	-	-	-	-	Del	-	D	88015959	88015962	1	56	702.826	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	7	7	7	24	23	24	23	7	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750911881	X	89710246	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	89710246	89710253	1	30	481.57	-	-	6	1	1	-	-	./.	0	0	0	0	10	8	11	8	0	0	./.	4	5	11	6	39	31	40	31	11	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750915288	X	102664283	GT	G	360	PASS	-	-	-	-	-	Del	-	D	102664283	102664285	1	7	322.251	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	10	0	0	./.	6	0	6	0	23	36	23	37	6	0	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750915801	X	104491287	ATAAGGGGTTGAATTTC	A	290	PASS	IL1RAPL2	CCDS14517.1	r.?	-	-	Del	intronic	D	104491287	104491305	16	35	539.894	-	-	1	1	1	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL2|CCDS14517.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	6	4	6	4	40	30	40	30	6	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750918701	X	116339007	ACTACTC	A	261	PASS	-	-	-	-	-	Del	-	D	116339007	116339016	6	30	486.988	-	-	1	1	1	-	-	./.	0	0	0	0	18	7	18	7	0	0	./.	4	5	4	7	23	30	24	30	5	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750920668	X	122838301	C	CACAGT	296	PASS	THOC2	CCDS43988.1	r.?	-	-	Ins	intronic	I	122838301	122838309	5	20	357.697	-	-	1	1	1	THOC2|CCDS43988.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THOC2|CCDS43988.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	10	6	10	0	0	./.	3	4	4	4	28	35	28	37	4	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750924199	X	135476563	ACT	A	480	PASS	GPR112	CCDS35409.1	r.?	-	-	Del	intronic	D	135476563	135476568	2	24	431.675	-	-	2	1	1	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPR112|CCDS35409.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	3	5	4	6	23	36	23	36	4	6	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750925210	X	139193688	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	139193688	139193698	1	15	312.016	-	-	9	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	2	4	2	28	25	28	26	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750926258	X	142952431	GA	G	300	PASS	-	-	-	-	-	Del	-	D	142952431	142952441	1	12	270.549	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	5	4	21	20	21	20	5	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750926887	X	144925797	AT	A	300	PASS	-	-	-	-	-	Del	-	D	144925797	144925805	1	12	270.549	-	-	7	1	1	-	-	./.	0	0	0	0	15	24	15	24	0	0	./.	3	2	4	2	29	28	29	28	4	2	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750928432	X	150605308	GT	G	569	PASS	-	-	-	-	-	Del	-	D	150605308	150605314	1	32	540.496	-	-	5	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	7	3	8	4	25	32	25	32	8	4	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750928711	X	151831479	CT	C	480	PASS	-	-	-	-	-	Del	-	D	151831479	151831484	1	9	432.879	-	-	4	1	1	-	-	./.	0	0	0	0	19	10	19	10	0	0	./.	8	0	11	1	32	27	32	27	11	1	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750929052	X	153187631	TCC	T	360	PASS	ARHGAP4	CCDS14736.1	r.?	-	-	Del	intronic	D	153187631	153187636	2	12	313.822	-	-	4	1	1	ARHGAP4|CCDS14736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARHGAP4|CCDS14736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	1	5	2	7	23	35	23	35	2	7	1	1	1	1	1	1	1	1
2731454	PD13632a	PD13632b	2750929092	X	153344062	AAAAG	A	255	PASS	MECP2	CCDS14741.1	r.?	-	-	Del	intronic	D	153344062	153344072	4	16	308.403	-	-	2	1	1	MECP2|CCDS14741.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MECP2|CCDS14741.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	3	3	4	5	39	22	39	22	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747784304	1	4575736	CTT	C	360	PASS	-	-	-	-	-	Del	-	D	4575736	4575740	2	15	322.055	-	-	3	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	4	3	7	32	39	32	39	3	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747787243	1	11081210	T	TA	540	PASS	TARDBP	CCDS122.1	r.?	-	-	Ins	intronic	I	11081210	11081211	1	28	474.052	-	-	0	1	1	TARDBP|CCDS122.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TARDBP|CCDS122.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	12	15	12	0	0	./.	6	3	7	3	51	29	51	29	7	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747787611	1	11900471	CT	C	540	PASS	CLCN6	CCDS138.1	r.2854delU	c.?	p.?	Del	3'UTR variant	D	11900471	11900476	1	28	483.082	-	-	4	1	1	CLCN6|CCDS138.1|r.2854delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CLCN6|CCDS138.1|r.2854delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	7	14	7	0	0	./.	6	3	7	6	22	19	22	19	7	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747789638	1	16904107	G	GAAGA	261	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16904107	16904112	4	20	512.074	-	-	1	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	26	29	26	0	0	./.	1	9	1	9	97	103	97	105	1	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747796988	1	33482635	TCTCA	T	598	PASS	AK2	CCDS373.1	r.?	-	-	Del	intronic	D	33482635	33482642	4	30	590.434	-	-	1	1	1	AK2|CCDS373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AK2|CCDS373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	9	2	9	3	29	23	29	23	9	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747798651	1	37706868	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	37706868	37706884	2	12	268.379	-	-	7	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	2	3	48	47	48	47	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747803836	1	49317592	AC	A	360	PASS	AGBL4	CCDS44137.1	r.?	-	-	Del	intronic	D	49317592	49317594	1	15	322.055	-	-	1	1	1	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL4|CCDS44137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	4	3	4	24	45	24	45	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747804130	1	50604690	G	GA	480	PASS	ELAVL4	CCDS44140.1	r.?	-	-	Ins	intronic	I	50604690	50604699	1	24	423.988	-	-	8	1	1	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ELAVL4|CCDS44140.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	7	15	7	0	0	./.	5	3	7	4	63	36	63	36	7	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747806586	1	55749351	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	55749351	55749367	2	12	268.379	-	-	7	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	3	2	4	2	52	46	52	46	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747815514	1	79954220	TG	T	360	PASS	-	-	-	-	-	Del	-	D	79954220	79954222	1	12	322.055	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	1	5	2	6	35	46	35	46	2	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747820919	1	93448373	GC	G	420	PASS	-	-	-	-	-	Del	-	D	93448373	93448375	1	20	375.731	-	-	1	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	4	3	4	3	36	19	36	19	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747822652	1	98319342	CATAA	C	567	PASS	DPYD	CCDS30777.1	r.?	-	-	Del	intronic	D	98319342	98319350	4	36	590.434	-	-	1	1	1	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	3	8	3	10	24	37	24	37	3	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747825306	1	105933183	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	105933183	105933184	1	10	258.144	-	-	0	1	1	-	-	./.	0	0	0	0	8	10	8	11	0	0	./.	4	1	4	0	33	29	34	31	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747830184	1	119551756	TTTC	T	720	PASS	-	-	-	-	-	Del	-	D	119551756	119551768	3	40	637.487	-	-	3	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	9	3	11	39	34	39	34	3	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747833180	1	143527373	AC	A	352	PASS	-	-	-	-	-	Del	-	D	143527373	143527375	1	19	964.961	-	-	1	1	1	-	-	./.	0	0	0	0	46	33	46	33	0	0	./.	18	0	24	2	186	130	186	130	24	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747835400	1	148872275	C	CT	304	PASS	-	-	-	-	-	Ins	-	I	148872275	148872276	1	18	477.664	-	-	0	1	1	-	-	./.	0	0	0	0	36	23	37	23	0	0	./.	8	1	8	0	98	105	99	107	8	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747839995	1	158496833	CT	C	1080	PASS	-	-	-	-	-	Del	-	D	158496833	158496835	1	84	966.165	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	5	13	8	13	31	49	31	49	8	13	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747847199	1	177112045	GGA	G	480	PASS	ASTN1	CCDS1319.1	r.?	-	-	Del	intronic	D	177112045	177112049	2	16	423.988	-	-	1	1	1	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASTN1|CCDS1319.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	7	1	2	5	18	25	18	25	8	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747849916	1	183239678	A	AG	300	PASS	NMNAT2	CCDS1353.1	r.?	-	-	Ins	intronic	I	183239678	183239679	1	10	264.165	-	-	0	1	1	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	4	14	4	0	0	./.	1	4	1	4	39	30	39	30	1	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747850509	1	184830485	A	AT	269	PASS	FAM129A	CCDS1364.1	r.?	-	-	Ins	intronic	I	184830485	184830493	1	12	265.369	-	-	7	1	1	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM129A|CCDS1364.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	14	7	14	0	0	./.	3	2	5	3	29	47	29	48	5	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747854802	1	196135396	TAGAA	T	749	PASS	-	-	-	-	-	Del	-	D	196135396	196135406	4	56	697.786	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	7	6	7	7	45	38	45	38	7	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747855475	1	198057775	TTCTC	T	629	PASS	-	-	-	-	-	Del	-	D	198057775	198057787	4	40	589.832	-	-	5	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	7	4	9	7	49	43	49	43	9	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747860305	1	209506645	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	209506645	209506654	1	10	264.767	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	4	5	7	53	46	53	47	5	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747865916	1	223196989	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	223196989	223196994	1	21	422.182	-	-	4	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	2	6	4	8	39	48	40	48	4	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747870396	1	234036015	TA	T	840	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	upstream	D	234036015	234036024	1	64	751.461	-	-	8	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	10	7	10	7	0	0	./.	7	7	11	7	32	32	32	32	11	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747872147	1	237234210	T	TA	600	PASS	RYR2	ENST00000366574	r.?	-	-	Ins	intronic	I	237234210	237234212	1	32	529.534	-	-	1	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	7	3	9	6	50	45	50	45	9	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747873279	1	240076081	GA	G	660	PASS	CHRM3	CCDS1616.1	r.6110delA	c.?	p.?	Del	3'UTR variant	D	240076081	240076085	1	40	590.434	-	-	3	1	1	CHRM3|CCDS1616.1|r.6110delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	CHRM3|CCDS1616.1|r.6110delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	11	12	11	12	0	0	./.	4	7	6	7	34	36	34	36	6	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747878393	10	2049393	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	2049393	2049395	1	18	370.091	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	5	3	9	37	42	37	42	3	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747881544	10	8614254	GAA	G	300	PASS	-	-	-	-	-	Del	-	D	8614254	8614257	2	12	268.909	-	-	2	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	3	2	5	2	21	34	21	34	5	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747886308	10	19389719	G	GT	300	PASS	ENSG00000234778	ENST00000455529	r.?	-	-	Ins	intronic	I	19389719	19389729	1	10	259.878	-	-	9	1	1	ENSG00000234778|ENST00000455529|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000234778|ENST00000455529|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	1	4	1	4	21	46	22	46	1	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747888190	10	24523608	AG	A	300	PASS	KIAA1217	CCDS31165.1	r.?	-	-	Del	intronic	D	24523608	24523610	1	6	265.297	-	-	1	1	-	KIAA1217|CCDS31165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1217|CCDS31165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	5	0	7	0	40	22	40	22	7	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747890814	10	29938598	TAC	T	360	PASS	SVIL	CCDS7164.1	r.?	-	-	Del	intronic	D	29938598	29938616	2	12	322.811	-	-	8	1	1	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SVIL|CCDS7164.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	1	5	2	5	32	28	32	28	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747894718	10	38925426	C	CCA	290	PASS	-	-	-	-	-	Ins	-	I	38925426	38925427	2	24	420.983	-	-	0	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	5	3	0	0	31	26	31	27	5	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747897467	10	45207545	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	45207545	45207547	1	30	479.1	-	-	1	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	5	4	5	5	36	30	37	30	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747898134	10	48483875	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	48483875	48483881	1	24	426.402	-	-	5	1	1	-	-	./.	0	0	0	0	15	9	15	10	0	0	./.	3	5	3	8	27	33	27	33	3	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747902364	10	61212155	TA	T	720	PASS	-	-	-	-	-	Del	-	D	61212155	61212165	1	49	646.827	-	-	9	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	6	6	6	6	28	42	28	42	6	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747920174	10	110924765	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	110924765	110924775	1	12	263.491	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	3	2	3	37	36	37	37	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747920545	10	112136714	TC	T	420	PASS	-	-	-	-	-	Del	-	D	112136714	112136719	1	18	377.316	-	-	4	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	2	5	2	5	27	25	27	25	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747926122	10	127090271	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	127090271	127090278	1	20	373.101	-	-	6	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	3	5	4	31	25	33	25	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747930132	11	2451976	TTGG	T	269	PASS	-	-	-	-	-	Del	-	D	2451976	2451990	3	10	263.226	-	-	4	1	-	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	1	4	1	1	40	43	40	43	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747930832	11	4043187	A	AT	329	PASS	STIM1	CCDS7749.1	r.?	-	-	Ins	intronic	I	4043187	4043196	1	12	319.002	-	-	8	1	1	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STIM1|CCDS7749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	1	5	3	9	52	41	52	41	3	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747931156	11	4742651	ACTT	A	689	PASS	-	-	-	-	-	Del	-	D	4742651	4742657	3	45	647.637	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	8	6	9	42	44	42	44	6	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747933328	11	9472143	A	AC	300	PASS	IPO7	CCDS31425.1	r.?	-	-	Ins	downstream	I	9472143	9472144	1	10	254.195	-	-	0	1	-	IPO7|CCDS31425.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	IPO7|CCDS31425.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	10	9	10	10	0	0	./.	4	1	4	2	52	52	53	52	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747936644	11	17898562	GGGCCTGCA	G	261	PASS	SERGEF	CCDS7828.1	r.?	-	-	Del	intronic	D	17898562	17898571	8	28	483.922	-	-	1	1	1	SERGEF|CCDS7828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SERGEF|CCDS7828.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	6	3	7	5	42	33	42	33	7	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747941825	11	30619264	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	30619264	30619271	1	16	320.206	-	-	6	1	1	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	3	3	5	5	50	34	50	35	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747949541	11	49062007	G	GT	488	PASS	ENSG00000182053	ENST00000332682	r.?	-	-	Ins	downstream	I	49062007	49062016	1	30	479.105	-	-	8	1	1	ENSG00000182053|ENST00000332682|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000182053|ENST00000332682|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	10	7	10	0	0	./.	4	5	6	5	31	48	31	48	6	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747953578	11	64270287	GTGTCTGCGTCTGCGTC	G	321	PASS	-	-	-	-	-	Del	-	D	64270287	64270333	16	36	539.698	-	-	2	1	-	-	-	./.	0	0	0	0	8	4	8	4	0	0	./.	5	5	3	2	39	26	39	26	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747957791	11	72947763	ACTC	A	478	PASS	P2RY2	CCDS8219.1	r.?	-	-	Del	downstream	D	72947763	72947775	3	28	485.126	-	-	3	1	1	P2RY2|CCDS8219.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	P2RY2|CCDS8219.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	5	8	5	8	0	0	./.	6	3	6	5	28	26	29	26	7	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747963423	11	90355577	CA	C	300	PASS	-	-	-	-	-	Del	-	D	90355577	90355585	1	12	267.441	-	-	7	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	4	6	34	33	34	33	4	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747975502	11	125061073	T	TA	360	PASS	PKNOX2	CCDS41730.1	r.?	-	-	Ins	intronic	I	125061073	125061081	1	12	317.798	-	-	7	1	1	PKNOX2|CCDS41730.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PKNOX2|CCDS41730.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	5	1	6	2	26	27	26	27	6	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747984931	12	12720658	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	12720658	12720667	1	36	583.739	-	-	8	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	3	8	4	49	36	49	36	9	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747986549	12	16933899	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	16933899	16933909	1	12	266.704	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	4	2	53	44	53	44	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747987190	12	18770934	A	AT	300	PASS	PIK3C2G	CCDS44839.1	r.?	-	-	Ins	intronic	I	18770934	18770941	1	12	266.704	-	-	6	1	1	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PIK3C2G|CCDS44839.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	4	3	39	41	41	41	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747993118	12	32032516	GT	G	329	PASS	-	-	-	-	-	Del	-	D	32032516	32032518	1	7	323.657	-	-	1	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	6	0	11	0	31	18	31	20	11	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747996795	12	44002952	ATTGT	A	329	PASS	-	-	-	-	-	Del	-	D	44002952	44002961	4	16	323.657	-	-	2	1	1	-	-	./.	0	0	0	0	12	20	12	20	0	0	./.	3	3	4	4	28	33	28	33	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747997220	12	45424961	CT	C	449	PASS	DBX2	CCDS31781.1	r.?	-	-	Del	intronic	D	45424961	45424964	1	21	430.941	-	-	2	1	1	DBX2|CCDS31781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DBX2|CCDS31781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	2	6	2	7	25	37	25	37	2	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2747999261	12	50624359	CTTT	C	358	PASS	LIMA1	CCDS44877.1	r.?	-	-	Del	intronic	D	50624359	50624369	3	18	377.6	-	-	9	1	-	LIMA1|CCDS44877.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIMA1|CCDS44877.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	5	3	6	42	47	42	47	3	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748001100	12	54144148	GTGGACAGCTTTGCTAGCC	G	522	PASS	-	-	-	-	-	Del	-	D	54144148	54144171	18	100	969.166	-	-	1	1	1	-	-	./.	0	0	0	0	4	6	4	6	0	0	./.	9	9	7	9	32	28	34	29	9	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748003561	12	60387580	AT	A	689	PASS	-	-	-	-	-	Del	-	D	60387580	60387583	1	48	647.315	-	-	2	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	7	7	7	29	32	29	32	7	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748004088	12	61787186	AG	A	780	PASS	-	-	-	-	-	Del	-	D	61787186	61787189	1	56	700.054	-	-	2	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	7	6	9	7	41	44	41	44	9	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748011431	12	81052476	G	GT	300	PASS	PTPRQ	ENST00000418574	r.?	-	-	Ins	intronic	I	81052476	81052486	1	12	264.898	-	-	9	1	1	PTPRQ|ENST00000418574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRQ|ENST00000418574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	18	17	18	0	0	./.	3	2	3	3	43	50	43	50	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748017181	12	96579398	C	CA	1020	PASS	-	-	-	-	-	Ins	-	I	96579398	96579404	1	84	906.192	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	11	6	13	7	38	44	38	45	13	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748017865	12	98158047	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	98158047	98158053	1	6	266.704	-	-	5	1	-	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	5	0	7	1	63	39	65	39	7	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748024479	12	114679349	GT	G	300	PASS	-	-	-	-	-	Del	-	D	114679349	114679356	1	6	269.714	-	-	6	1	1	-	-	./.	0	0	0	0	4	13	4	13	0	0	./.	5	0	6	6	25	24	25	24	6	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748024686	12	115112592	T	TC	877	PASS	TBX3	CCDS9176.1	r.2111_2112insg	c.1147_1148insG	p.E383fs*24	Ins	frameshift	I	115112592	115112594	1	70	798.306	-	-	1	1	1	TBX3|CCDS9176.1|r.2111_2112insg|c.1147_1148insG|p.E383fs*24|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	TBX3|CCDS9176.1|r.2111_2112insg|c.1147_1148insG|p.E383fs*24|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	10	10	10	10	0	0	./.	6	9	8	14	36	53	37	54	8	14	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748025469	12	116773296	AT	A	300	PASS	-	-	-	-	-	Del	-	D	116773296	116773306	1	6	269.714	-	-	9	1	-	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	0	5	0	48	21	48	21	5	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748031859	12	128930346	G	GC	420	PASS	TMEM132C	CCDS45009.1	r.?	-	-	Ins	intronic	I	128930346	128930353	1	14	372.784	-	-	6	1	1	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132C|CCDS45009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	6	1	6	1	35	33	36	34	6	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748032735	12	130960297	C	CA	360	PASS	RIMBP2	CCDS31925.1	r.?	-	-	Ins	intronic	I	130960297	130960304	1	15	320.045	-	-	6	1	1	RIMBP2|CCDS31925.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIMBP2|CCDS31925.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	2	4	2	4	28	33	29	33	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748040396	13	33315183	TC	T	360	PASS	PDS5B	CCDS41878.1	r.?	-	-	Del	intronic	D	33315183	33315187	1	15	323.706	-	-	3	1	1	PDS5B|CCDS41878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDS5B|CCDS41878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	2	6	2	33	22	33	22	6	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748040509	13	33646702	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	33646702	33646712	1	10	267.146	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	1	4	1	35	37	35	39	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748054555	13	73145749	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	73145749	73145759	1	12	267.748	-	-	9	1	1	-	-	./.	0	0	0	0	20	9	20	9	0	0	./.	3	2	3	3	39	35	39	37	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748059297	13	86723191	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	86723191	86723207	2	12	266.544	-	-	7	1	-	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	2	3	2	3	31	35	31	35	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748060159	13	89607591	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	89607591	89607600	1	21	428.397	-	-	8	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	6	2	6	3	30	27	32	27	6	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748062381	13	95749687	CAG	C	269	PASS	ABCC4	CCDS9474.1	r.?	-	-	Del	intronic	D	95749687	95749703	2	12	270.758	-	-	7	1	1	ABCC4|CCDS9474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC4|CCDS9474.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	3	17	30	17	30	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748063790	13	99315188	G	GGA	300	PASS	-	-	-	-	-	Ins	-	I	99315188	99315189	2	6	259.319	-	-	0	1	-	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	0	5	0	1	34	34	35	34	0	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748069425	14	19013468	A	AA	720	PASS	-	-	-	-	-	Ins	-	I	19013466	19013469	1	40	641.428	-	-	2	1	1	-	-	./.	0	0	0	0	26	42	26	43	0	0	./.	3	9	0	2	74	205	75	206	3	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748074691	14	32282680	C	CATATATATACACACATACATATATACAGAT	337	PASS	NUBPL	CCDS41940.1	r.?	-	-	Ins	intronic	I	32282680	32282690	30	16	215.956	-	-	0	1	-	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	3	0	0	47	37	47	37	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748081144	14	49386277	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	49386277	49386286	1	25	428.421	-	-	8	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	4	4	9	4	35	40	35	40	9	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748083247	14	54094955	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	54094955	54094965	1	12	264.151	-	-	9	1	1	-	-	./.	0	0	0	0	10	18	10	18	0	0	./.	3	2	4	3	40	31	41	32	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748083295	14	54291676	TA	T	480	PASS	-	-	-	-	-	Del	-	D	54291676	54291683	1	21	433.238	-	-	6	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	2	6	4	8	32	26	32	26	4	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748085645	14	59643440	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	59643440	59643445	2	15	324.928	-	-	2	1	1	-	-	./.	0	0	0	0	13	5	13	5	0	0	./.	2	4	2	4	36	29	36	29	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748088083	14	65873217	TTTTTC	T	449	PASS	FUT8	CCDS9775.1	r.?	-	-	Del	upstream	D	65873217	65873238	5	24	432.636	-	-	4	1	-	FUT8|CCDS9775.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	FUT8|CCDS9775.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	5	7	5	7	0	0	./.	3	5	4	7	36	34	36	34	4	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748100647	14	97350878	T	TA	300	PASS	VRK1	CCDS9947.1	r.?	-	-	Ins	downstream	I	97350878	97350888	1	12	267.763	-	-	9	1	1	VRK1|CCDS9947.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	VRK1|CCDS9947.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	17	11	17	11	0	0	./.	3	2	6	2	46	41	46	42	6	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748101366	14	99651796	A	AC	300	PASS	BCL11B	CCDS9949.1	r.?	-	-	Ins	intronic	I	99651796	99651797	1	10	261.141	-	-	0	1	-	BCL11B|CCDS9949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BCL11B|CCDS9949.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	2	10	2	0	0	./.	1	4	1	4	43	32	43	33	1	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748101534	14	100092601	CGG	C	420	PASS	AL160313.2	ENST00000502101	r.?	-	-	Del	downstream	D	100092601	100092606	2	20	376.073	-	-	4	1	-	AL160313.2|ENST00000502101|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AL160313.2|ENST00000502101|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	4	11	4	11	0	0	./.	3	4	4	5	35	38	35	38	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748117679	15	51222979	G	GT	840	PASS	AP4E1	CCDS32240.1	r.?	-	-	Ins	intronic	I	51222979	51222988	1	63	749.25	-	-	8	1	1	AP4E1|CCDS32240.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AP4E1|CCDS32240.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	8	6	9	9	34	29	36	29	9	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748119543	15	55902255	AT	A	360	PASS	PRTG	CCDS42040.1	r.?	-	-	Del	downstream	D	55902255	55902258	1	15	324.978	-	-	2	1	1	PRTG|CCDS42040.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRTG|CCDS42040.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	6	6	6	0	0	./.	4	2	5	5	27	40	27	40	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748122815	15	63624867	TA	T	540	PASS	CA12	CCDS10185.1	r.?	-	-	Del	intronic	D	63624867	63624870	1	30	487.466	-	-	2	1	1	CA12|CCDS10185.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA12|CCDS10185.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	4	5	5	51	43	51	43	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748128305	15	76824654	A	ACCCCT	327	PASS	SCAPER	ENST00000303521	r.?	-	-	Ins	intronic	I	76824654	76824675	5	20	356.864	-	-	4	1	1	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCAPER|ENST00000303521|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	3	16	3	0	0	./.	3	4	5	4	27	26	28	26	6	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748132701	15	88709087	AGT	A	300	PASS	NTRK3	CCDS10340.1	r.?	-	-	Del	intronic	D	88709087	88709106	2	12	267.804	-	-	9	1	-	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NTRK3|CCDS10340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	2	3	2	5	42	38	42	38	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748133132	15	89862639	C	CCTTG	716	PASS	FANCI	CCDS45346.1	r.?	-	-	Ins	downstream	I	89862639	89862644	4	55	720.953	-	-	1	1	1	FANCI|CCDS45346.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	POLG|CCDS10350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	10	5	12	32	55	32	55	5	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748134885	15	93508201	CT	C	420	PASS	CHD2	CCDS10374.2	r.?	-	-	Del	intronic	D	93508201	93508206	1	20	379.141	-	-	4	1	1	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	3	4	4	7	30	37	30	37	4	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748134959	15	93673396	CA	C	480	PASS	-	-	-	-	-	Del	-	D	93673396	93673398	1	25	429.089	-	-	1	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	4	4	5	5	35	40	35	40	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748135455	15	94766675	G	GT	329	PASS	-	-	-	-	-	Ins	-	I	94766675	94766685	1	15	318.957	-	-	9	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	4	2	4	2	46	46	46	46	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748138143	15	101291797	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	101291797	101291815	2	12	269.009	-	-	8	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	3	2	3	2	32	34	32	34	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748140788	16	4300051	TAACGGGA	T	290	PASS	AC009171.1	ENST00000500351	r.?	-	-	Del	intronic	D	4300051	4300061	7	35	540.885	-	-	1	1	1	AC009171.1|ENST00000500351|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC009171.1|ENST00000500351|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	6	4	7	6	41	40	42	40	8	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748141484	16	5517198	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	5517198	5517199	1	15	317.307	-	-	0	1	-	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	4	2	5	4	52	44	52	44	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748143148	16	8608261	GA	G	300	PASS	-	-	-	-	-	Del	-	D	8608261	8608270	1	12	269.841	-	-	8	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	2	3	4	4	44	60	44	60	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748147722	16	17020125	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	17020125	17020126	1	36	530.651	-	-	0	1	1	-	-	./.	0	0	0	0	11	4	11	5	0	0	./.	5	5	0	0	31	50	31	50	5	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748150844	16	23822696	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	23822696	23822705	1	30	480.776	-	-	8	1	-	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	4	5	5	5	54	33	56	33	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748150851	16	23835062	AAAAGAAAAGAAAAGAAAAGAAAAG	A	269	PASS	-	-	-	-	-	Del	-	D	23835062	23835090	24	10	270.443	-	-	1	1	-	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	4	1	0	0	42	36	42	36	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748152432	16	26740278	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	26740278	26740297	2	12	270.443	-	-	9	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	2	3	3	3	47	48	47	48	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748154102	16	30118022	TTTTA	T	420	PASS	GDPD3	CCDS10671.2	r.?	-	-	Del	intronic	D	30118022	30118046	4	18	378.62	-	-	5	1	-	GDPD3|CCDS10671.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GDPD3|CCDS10671.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	2	5	3	6	35	36	35	36	3	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748158440	16	46490717	CT	C	261	PASS	-	-	-	-	-	Del	-	D	46490717	46490722	1	22	594.974	-	-	4	1	1	-	-	./.	0	0	0	0	25	10	25	10	0	0	./.	10	1	14	2	95	57	95	57	14	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748164370	16	62481094	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	62481094	62481102	1	12	320.919	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	5	1	5	2	43	38	43	38	5	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748164895	16	63801660	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	63801660	63801667	1	25	427.892	-	-	6	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	4	5	6	37	28	37	29	5	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748167429	16	70395915	TC	T	358	PASS	DDX19A	CCDS10889.1	r.?	-	-	Del	intronic	D	70395915	70395917	1	20	377.416	-	-	1	1	1	DDX19A|CCDS10889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DDX19A|CCDS10889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	4	3	5	4	41	35	41	35	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748180584	17	8093805	A	AC	300	PASS	C17orf59	CCDS11133.2	r.?	-	-	Ins	upstream	I	8093805	8093814	1	12	266.139	-	-	8	1	1	C17orf59|CCDS11133.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	C17orf59|CCDS11133.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	14	11	14	11	0	0	./.	3	2	4	2	34	23	35	23	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748180888	17	8653723	T	TAAATA	480	PASS	SPDYE4	CCDS45609.1	r.?	-	-	Ins	downstream	I	8653723	8653746	5	24	408.483	-	-	4	1	-	SPDYE4|CCDS45609.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SPDYE4|CCDS45609.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	5	7	5	7	0	0	./.	3	5	6	5	24	18	24	18	6	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748184201	17	16736626	CTGCT	C	262	PASS	-	-	-	-	-	Del	-	D	16736626	16736635	4	11	540.104	-	-	2	1	1	-	-	./.	0	0	0	0	14	0	14	0	0	0	./.	10	0	12	0	76	6	76	6	12	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748186056	17	20641623	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	20641623	20641633	1	12	266.139	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	10	10	0	0	./.	2	3	2	4	56	53	56	53	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748187445	17	22159276	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	22159276	22159284	1	36	585.144	-	-	7	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	8	6	8	33	38	33	40	6	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748191812	17	33599673	C	CA	1080	PASS	SLFN5	CCDS32619.1	r.?	-	-	Ins	downstream	I	33599673	33599680	1	96	962.434	-	-	6	1	1	SLFN5|CCDS32619.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SLFN5|CCDS32619.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	12	10	12	0	0	./.	7	11	12	15	39	55	40	55	12	15	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748192151	17	34328811	TA	T	300	PASS	CCL15	CCDS11304.1	r.?	-	-	Del	upstream	D	34328811	34328821	1	10	270.353	-	-	9	1	1	CCL15|CCDS11304.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CCL15|CCDS11304.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	13	9	13	9	0	0	./.	4	1	4	1	39	38	39	38	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748194816	17	39431997	C	CACTTGCTGCAGGACT	481	PASS	KRTAP9L1	ENST00000391354	r.87_88insacuugcugcaggacu	c.48_49insACTTGCTGCAGGACT	p.C18_W19insCRTTC	Ins	inframe	I	39431997	39432000	15	14	585.516	-	-	0	1	1	KRTAP9L1|ENST00000391354|r.87_88insacuugcugcaggacu|c.48_49insACTTGCTGCAGGACT|p.C18_W19insCRTTC|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	KRTAP9L1|ENST00000391354|r.87_88insacuugcugcaggacu|c.48_49insACTTGCTGCAGGACT|p.C18_W19insCRTTC|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	./.	0	0	0	0	8	5	8	5	0	0	./.	13	0	1	0	37	10	50	10	14	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748197637	17	44181571	CGTCA	C	360	PASS	KIAA1267	CCDS11503.1	r.?	-	-	Del	intronic	D	44181571	44181581	4	16	324.424	-	-	2	1	1	KIAA1267|CCDS11503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1267|CCDS11503.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	3	4	40	39	40	39	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748197979	17	45165704	TAC	T	960	PASS	AC005670.1	CCDS7221.1	r.?	-	-	Del	intronic	D	45165704	45165708	2	72	864.528	-	-	1	1	1	AC005670.1|CCDS7221.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC005670.1|CCDS7221.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	5	11	9	16	45	45	45	45	9	16	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748199231	17	47066203	TG	T	772	PASS	-	-	-	-	-	Del	-	D	47066203	47066205	1	54	702.316	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	8	7	13	44	42	44	42	7	13	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748201727	17	52157894	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	52157894	52157903	1	12	267.343	-	-	8	1	1	-	-	./.	0	0	0	0	17	5	17	5	0	0	./.	3	2	3	6	39	28	39	29	3	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748206328	17	61783803	TACC	T	718	PASS	KCNH6	CCDS11638.1	r.?	-	-	Del	intronic	D	61783803	61783811	3	50	699.908	-	-	2	1	1	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	9	5	9	39	41	39	41	5	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748208408	17	65655828	CTCTTT	C	420	PASS	PITPNC1	ENST00000423236	r.?	-	-	Del	intronic	D	65655828	65655840	5	18	378.494	-	-	2	1	1	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	2	5	2	7	34	55	34	55	2	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748209604	17	67952888	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	67952888	67952903	2	7	322.016	-	-	7	1	1	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	0	6	0	6	16	56	16	56	0	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748210108	17	69022481	ACTTTC	A	300	PASS	-	-	-	-	-	Del	-	D	69022481	69022492	5	12	270.353	-	-	2	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	5	23	36	23	36	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748210542	17	70123459	G	GT	1080	PASS	SOX9	CCDS11689.1	r.?	-	-	Ins	downstream	I	70123459	70123463	1	99	962.434	-	-	3	1	1	SOX9|CCDS11689.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SOX9|CCDS11689.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	8	8	8	0	0	./.	8	10	10	17	38	42	39	42	10	17	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748213509	17	75319391	CT	C	300	PASS	SEPT9	CCDS45791.1	r.?	-	-	Del	intronic	D	75319391	75319401	1	12	270.353	-	-	9	1	1	SEPT9|CCDS45791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEPT9|CCDS45791.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	15	2	15	0	0	./.	3	2	3	2	54	45	54	45	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748214292	17	76847439	AAG	A	300	PASS	TIMP2	CCDS11758.1	r.?	-	-	Del	downstream	D	76847439	76847457	2	12	270.353	-	-	8	1	1	TIMP2|CCDS11758.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TIMP2|CCDS11758.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	9	8	9	0	0	./.	3	2	3	3	64	49	64	49	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748218368	18	3442406	A	AT	900	PASS	TGIF1	CCDS11835.1	r.?	-	-	Ins	intronic	I	3442406	3442416	1	70	803.337	-	-	9	1	1	TGIF1|CCDS11835.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TGIF1|CCDS11835.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	6	9	7	11	29	29	29	30	7	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748221418	18	11883421	TA	T	420	PASS	GNAL	CCDS11851.1	r.3963delA	c.?	p.?	Del	3'UTR variant	D	11883421	11883424	1	20	379.105	-	-	2	1	1	GNAL|CCDS11851.1|r.3963delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	GNAL|CCDS11851.1|r.3963delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	8	10	8	10	0	0	./.	4	3	5	4	25	27	25	27	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748222959	18	15182264	GA	G	289	PASS	-	-	-	-	-	Del	-	D	15182264	15182272	1	35	541.578	-	-	7	1	1	-	-	./.	0	0	0	0	44	43	44	43	0	0	./.	6	4	7	4	94	96	94	97	7	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748224210	18	20670331	C	CT	283	PASS	-	-	-	-	-	Ins	-	I	20670331	20670340	1	15	320.733	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	6	4	44	42	44	44	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748224890	18	21999933	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	21999933	21999949	2	10	270.789	-	-	7	1	-	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	1	4	1	4	35	45	35	45	1	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748227096	18	27885617	TTC	T	420	PASS	-	-	-	-	-	Del	-	D	27885617	27885636	2	20	379.105	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	3	5	5	38	42	38	42	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748231398	18	40341877	C	CT	1020	PASS	RIT2	CCDS11921.1	r.?	-	-	Ins	intronic	I	40341877	40341881	1	60	910.448	-	-	3	1	1	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIT2|CCDS11921.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	13	0	0	./.	14	3	15	4	45	27	45	27	15	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748233756	18	46712023	G	GA	420	PASS	DYM	CCDS11937.1	r.?	-	-	Ins	intronic	I	46712023	46712031	1	18	374.891	-	-	7	1	1	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DYM|CCDS11937.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	5	2	5	4	35	31	35	31	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748240578	18	63475915	G	GT	300	PASS	CDH7	CCDS11993.1	r.?	-	-	Ins	intronic	I	63475915	63475925	1	12	263.565	-	-	9	1	1	CDH7|CCDS11993.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH7|CCDS11993.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	2	3	2	3	33	41	33	41	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748249877	19	5695635	G	GA	300	PASS	LONP1	CCDS12148.1	r.?	-	-	Ins	intronic	I	5695635	5695645	1	6	267.085	-	-	9	1	1	LONP1|CCDS12148.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LONP1|CCDS12148.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	5	0	7	1	49	48	50	48	7	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748250295	19	6411112	C	CTG	900	PASS	KHSRP	CCDS45936.1	r.?	-	-	Ins	downstream	I	6411112	6411130	2	70	794.031	-	-	8	1	1	KHSRP|CCDS45936.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KHSRP|CCDS45936.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	7	10	7	10	0	0	./.	6	9	8	9	31	47	31	47	8	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748254001	19	12362882	C	CA	300	PASS	ZNF44	ENST00000393337	r.?	-	-	Ins	upstream	I	12362882	12362884	1	12	261.667	-	-	1	1	1	ZNF44|ENST00000393337|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ZNF44|ENST00000393337|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	6	12	6	0	0	./.	3	2	6	9	40	43	41	43	6	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748258721	19	20041338	CTACTGCTAGACCGCGGTCTGCTAGGCAACGGGCGTCTTCCCAGACGCTGGCAT	C	305	PASS	ZNF90	CCDS32973.1	r.?	-	-	Del	intronic	D	20041338	20041404	53	40	594.933	-	-	1	1	1	ZNF90|CCDS32973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF90|CCDS32973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	2	8	2	0	0	./.	7	4	0	0	19	22	26	26	7	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748259807	19	21722224	CT	C	900	PASS	ZNF429	CCDS42537.1	r.?	-	-	Del	downstream	D	21722224	21722230	1	60	812.093	-	-	5	1	1	ZNF429|CCDS42537.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF429|CCDS42537.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	12	11	12	0	0	./.	11	4	14	5	41	30	41	30	14	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748262266	19	29246095	GC	G	300	PASS	-	-	-	-	-	Del	-	D	29246095	29246101	1	12	270.698	-	-	5	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	2	3	2	7	21	51	21	51	2	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748262935	19	30540083	AT	A	300	PASS	-	-	-	-	-	Del	-	D	30540083	30540093	1	12	267.085	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	3	39	47	39	47	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748265611	19	36333573	G	GA	300	PASS	NPHS1	CCDS32996.1	r.?	-	-	Ins	intronic	I	36333573	36333583	1	12	249.023	-	-	9	1	1	NPHS1|CCDS32996.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPHS1|CCDS32996.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	3	2	3	2	42	42	42	42	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748270608	19	45615556	A	AGGCGTGGGATTACCTTCTGATACATTTCACCTGGAGTGCTGGGATGACG	261	PASS	LRRC68	ENST00000421905	r.?	-	-	Ins	intronic	I	45615556	45615591	49	28	220.543	-	-	0	1	1	LRRC68|ENST00000421905|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC68|ENST00000421905|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	6	3	0	0	57	38	58	40	6	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748271426	19	47015096	TTG	T	269	PASS	-	-	-	-	-	Del	-	D	47015096	47015116	2	10	264.677	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	1	4	1	5	45	55	45	55	1	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748272177	19	48261676	TG	T	300	PASS	GLTSCR2	CCDS12705.1	r.?	-	-	Del	downstream	D	48261676	48261679	1	10	268.289	-	-	2	1	1	GLTSCR2|CCDS12705.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	GLTSCR2|CCDS12705.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	6	5	6	0	0	./.	1	4	2	5	28	41	28	41	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748275421	19	53907872	ATG	A	269	PASS	ZNF765	CCDS46171.1	r.?	-	-	Del	intronic	D	53907872	53907892	2	6	268.289	-	-	9	1	-	ZNF765|CCDS46171.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF765|ENST00000340310|r.321_321+1delUg|c.?|p.?|protein_coding:five_prime_UTR:exon:extended_cis_splice_site:deletion:5_prime_UTR_variant:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:CGPX06:SO:0000159:SO:0001623:SO:0001577:SO:0001576	./.	0	0	0	0	7	6	7	6	0	0	./.	0	5	1	5	28	32	28	32	1	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748277595	19	57196377	G	GAAGGAAGAAAGAAAAAGAAAGAGAAAGA	269	PASS	-	-	-	-	-	Ins	-	I	57196377	57196381	28	12	184.603	-	-	0	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	0	0	38	39	38	39	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748280503	2	5395531	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	5395531	5395540	1	12	265.036	-	-	8	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	3	5	45	38	46	38	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748285402	2	19139184	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	19139184	19139192	1	15	318.765	-	-	7	1	1	-	-	./.	0	0	0	0	11	6	11	6	0	0	./.	2	4	2	4	26	35	27	35	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748292248	2	36757177	A	AT	300	PASS	CRIM1	CCDS1783.1	r.?	-	-	Ins	intronic	I	36757177	36757187	1	12	265.638	-	-	9	1	1	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CRIM1|CCDS1783.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	2	3	31	44	31	45	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748294838	2	42719229	G	GA	329	PASS	KCNG3	CCDS1809.1	r.?	-	-	Ins	intronic	I	42719229	42719239	1	15	318.765	-	-	9	1	1	KCNG3|CCDS1809.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNG3|CCDS1809.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	7	2	47	35	47	35	7	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748314171	2	98746156	CTG	C	269	PASS	VWA3B	CCDS42718.1	r.?	-	-	Del	intronic	D	98746156	98746172	2	6	268.648	-	-	7	1	-	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VWA3B|CCDS42718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	5	0	7	0	43	34	43	34	7	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748314825	2	100548765	CAAA	C	469	PASS	AFF3	CCDS42723.1	r.?	-	-	Del	intronic	D	100548765	100548772	3	35	536.092	-	-	6	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	15	7	15	0	0	./.	6	4	7	4	43	39	43	39	7	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748315828	2	102974341	CGT	C	300	PASS	IL18R1	CCDS2060.1	r.?	-	-	Del	intronic	D	102974341	102974358	2	12	268.648	-	-	8	1	1	IL18R1|CCDS2060.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IL18R1|CCDS2060.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	3	2	4	4	30	48	30	48	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748316704	2	105960987	T	TATAA	838	PASS	C2orf49	CCDS2068.1	r.?	-	-	Ins	intronic	I	105960987	105960994	4	70	769.82	-	-	1	1	1	C2orf49|CCDS2068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C2orf49|CCDS2068.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	15	9	0	0	./.	6	9	9	13	37	40	37	40	9	13	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748319333	2	113604710	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	113604710	113604712	1	12	255.403	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	3	2	44	32	45	32	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748323551	2	125722198	TTATCA	T	567	PASS	-	-	-	-	-	Del	-	D	125722198	125722204	5	42	589.821	-	-	1	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	5	6	9	11	26	32	26	32	9	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748333046	2	150745098	AT	A	420	PASS	-	-	-	-	-	Del	-	D	150745098	150745108	1	14	376.107	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	6	1	6	1	39	40	39	40	6	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748338682	2	167059778	CTT	C	1147	PASS	SCN9A	CCDS46441.1	r.?	-	-	Del	intronic	D	167059778	167059781	2	117	1074.59	-	-	2	1	1	SCN9A|CCDS46441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCN9A|CCDS46441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	4	10	4	0	0	./.	8	12	16	17	27	30	27	30	16	17	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748348748	2	195036201	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	195036201	195036208	1	18	371.893	-	-	6	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	2	5	3	8	36	44	36	44	3	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748349155	2	196270786	CA	C	540	PASS	-	-	-	-	-	Del	-	D	196270786	196270790	1	28	483.566	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	6	4	6	25	25	25	25	4	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748349747	2	197792564	TGC	T	269	PASS	PGAP1	CCDS2318.1	r.?	-	-	Del	upstream	D	197792564	197792568	2	12	268.648	-	-	1	1	1	PGAP1|CCDS2318.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PGAP1|CCDS2318.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	11	8	11	0	0	./.	3	2	4	2	52	30	52	30	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748354503	2	209518799	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	209518799	209518805	1	20	371.893	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	4	5	5	33	42	33	42	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748357767	2	218407270	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	218407270	218407290	2	12	263.229	-	-	9	1	-	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	3	2	4	2	26	44	26	44	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748358785	2	221018775	AAG	A	329	PASS	-	-	-	-	-	Del	-	D	221018775	221018779	2	7	298.295	-	-	1	1	-	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	6	0	4	0	40	20	40	20	6	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748364115	2	234150165	AAAG	A	267	PASS	ATG16L1	ENST00000431917	r.?	-	-	Del	intronic	D	234150165	234150181	3	7	298.295	-	-	5	1	1	ATG16L1|ENST00000431917|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ATG16L1|ENST00000431917|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	0	6	2	0	33	20	33	20	2	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748367287	20	180390	GTC	G	269	PASS	-	-	-	-	-	Del	-	D	180390	180410	2	10	261.616	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	4	1	4	1	37	27	38	27	5	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748370276	20	6971314	CAAG	C	418	PASS	-	-	-	-	-	Del	-	D	6971314	6971322	3	21	433.999	-	-	2	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	2	6	5	8	37	39	37	40	5	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748373853	20	17285129	AT	A	480	PASS	PCSK2	CCDS13125.1	r.?	-	-	Del	intronic	D	17285129	17285134	1	21	433.999	-	-	4	1	1	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	6	4	6	24	24	24	24	4	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748375584	20	22015428	CATCT	C	600	PASS	-	-	-	-	-	Del	-	D	22015428	22015442	4	32	542.499	-	-	3	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	7	6	11	44	51	44	51	6	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748379953	20	31438863	T	TG	300	PASS	MAPRE1	CCDS13208.1	r.?	-	-	Ins	downstream	I	31438863	31438864	1	6	267.637	-	-	0	1	1	MAPRE1|CCDS13208.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	MAPRE1|CCDS13208.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	10	14	10	0	0	./.	0	5	2	7	48	45	48	46	2	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748382096	20	35528973	G	GT	300	PASS	SAMHD1	CCDS13288.1	r.?	-	-	Ins	intronic	I	35528973	35528981	1	12	253.188	-	-	7	1	1	SAMHD1|CCDS13288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SAMHD1|CCDS13288.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	3	2	5	4	57	50	58	50	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748388176	20	49434976	CCT	C	300	PASS	BCAS4	CCDS33487.1	r.?	-	-	Del	intronic	D	49434976	49434992	2	12	267.637	-	-	7	1	-	BCAS4|CCDS33487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAS4|CCDS33487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	2	4	40	49	40	49	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748388590	20	50288342	AC	A	420	PASS	ATP9A	CCDS33489.1	r.?	-	-	Del	intronic	D	50288342	50288344	1	20	365.902	-	-	1	1	1	ATP9A|CCDS33489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP9A|CCDS33489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	6	4	6	0	0	./.	3	4	3	4	38	64	38	64	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748388778	20	50524603	GGGATATT	G	319	PASS	-	-	-	-	-	Del	-	D	50524603	50524611	7	40	588.32	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	7	5	7	35	44	35	44	5	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748391247	20	55465310	TC	T	300	PASS	-	-	-	-	-	Del	-	D	55465310	55465314	1	12	270.045	-	-	3	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	2	3	4	3	31	36	31	36	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748391443	20	55896951	G	GC	420	PASS	-	-	-	-	-	Ins	-	I	55896951	55896957	1	20	375.535	-	-	5	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	3	5	5	47	57	47	58	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748391576	20	56342829	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	56342829	56342839	1	10	266.433	-	-	9	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	1	4	4	4	42	48	42	48	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748391738	20	56849649	G	GA	660	PASS	PPP4R1L	ENST00000244070	r.?	-	-	Ins	intronic	I	56849649	56849655	1	42	590.126	-	-	5	1	1	PPP4R1L|ENST00000244070|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPP4R1L|ENST00000244070|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	6	5	10	12	54	40	54	41	10	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748392378	20	58500957	TAAAACCTCACTAGTTTGTC	T	435	PASS	SYCP2	CCDS13482.1	r.?	-	-	Del	intronic	D	58500957	58500987	19	60	813.748	-	-	1	1	1	SYCP2|CCDS13482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYCP2|CCDS13482.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	4	11	4	8	41	50	41	53	4	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748394379	21	9473397	GA	G	534	PASS	-	-	-	-	-	Del	-	D	9473397	9473401	1	30	479.635	-	-	3	1	1	-	-	./.	0	0	0	0	36	43	36	43	0	0	./.	5	4	6	4	107	110	107	110	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748396833	21	10738189	G	GT	320	PASS	-	-	-	-	-	Ins	-	I	10738189	10738196	1	54	698.023	-	-	6	1	1	-	-	./.	0	0	0	0	42	33	42	33	0	0	./.	5	8	4	10	78	86	81	89	5	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748397503	21	11050657	A	AG	1030	PASS	-	-	-	-	-	Ins	-	I	11050657	11050658	1	110	1015.37	-	-	0	1	1	-	-	./.	0	0	0	0	80	45	80	45	0	0	./.	9	10	0	0	190	133	194	133	9	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748404482	21	27696880	GCC	G	360	PASS	-	-	-	-	-	Del	-	D	27696880	27696884	2	15	325.777	-	-	3	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	2	6	4	41	50	41	50	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748411209	21	42637321	TAATGA	T	687	PASS	BACE2	CCDS13668.1	r.?	-	-	Del	intronic	D	42637321	42637328	5	54	705.85	-	-	1	1	1	BACE2|CCDS13668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BACE2|CCDS13668.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	8	5	9	8	38	30	38	30	9	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748413685	22	16664082	TA	T	309	PASS	-	-	-	-	-	Del	-	D	16664082	16664091	1	12	599.101	-	-	8	1	1	-	-	./.	0	0	0	0	8	2	8	2	0	0	./.	11	0	11	0	30	6	30	6	11	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748416321	22	21986826	GT	G	420	PASS	CCDC116	CCDS13791.1	r.?	-	-	Del	upstream	D	21986826	21986828	1	20	378.838	-	-	1	1	1	CCDC116|CCDS13791.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CCDC116|CCDS13791.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	7	10	7	0	0	./.	4	3	8	4	43	33	43	33	8	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748418301	22	25509342	ATAGGAGACTTCTGCCACC	A	348	PASS	KIAA1671	CCDS46676.1	r.?	-	-	Del	intronic	D	25509342	25509362	18	49	651.156	-	-	1	1	1	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	6	6	6	5	32	42	32	43	6	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748418322	22	25567686	TA	T	300	PASS	KIAA1671	CCDS46676.1	r.?	-	-	Del	intronic	D	25567686	25567696	1	6	271.716	-	-	9	1	1	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA1671|CCDS46676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	11	4	11	0	0	./.	0	5	2	6	24	41	24	41	2	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748424162	22	37664669	T	TTG	260	PASS	-	-	-	-	-	Ins	-	I	37664669	37664670	2	15	293.067	-	-	0	1	1	-	-	./.	0	0	0	0	6	4	7	4	0	0	./.	2	4	6	6	31	32	31	32	6	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748424596	22	38591538	TA	T	267	PASS	-	-	-	-	-	Del	-	D	38591538	38591540	1	12	321.966	-	-	1	1	-	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	1	5	0	0	26	52	26	52	1	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748429140	22	47769573	GT	G	269	PASS	-	-	-	-	-	Del	-	D	47769573	47769575	1	6	265.696	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	5	0	4	0	29	32	30	32	5	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748435342	3	11765534	G	GATTTT	660	PASS	VGLL4	CCDS2606.1	r.?	-	-	Ins	upstream	I	11765534	11765560	5	40	559.063	-	-	5	1	-	VGLL4|CCDS2606.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	VGLL4|CCDS2606.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	6	8	6	8	0	0	./.	4	7	5	3	20	32	21	32	5	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748435476	3	12140078	AT	A	300	PASS	SYN2	ENST00000341648	r.?	-	-	Del	intronic	D	12140078	12140080	1	6	267.967	-	-	1	1	1	SYN2|ENST00000341648|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYN2|ENST00000341648|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	12	3	12	0	0	./.	0	5	2	8	5	23	5	23	2	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748436367	3	14284932	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	14284932	14284940	1	20	372.625	-	-	7	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	4	3	6	5	23	33	23	33	6	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748438755	3	21437404	CATAT	C	360	PASS	-	-	-	-	-	Del	-	D	21437404	21437420	4	16	320.597	-	-	7	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	4	3	33	29	33	29	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748444684	3	38411245	AGT	A	660	PASS	XYLB	CCDS2678.1	r.?	-	-	Del	intronic	D	38411245	38411252	2	36	585.554	-	-	3	1	1	XYLB|CCDS2678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XYLB|CCDS2678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	8	5	10	32	39	32	39	5	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748444983	3	39444715	C	CCA	300	PASS	SNORA62	CCDS2686.1	r.?	-	-	Ins	upstream	I	39444715	39444716	2	10	260.742	-	-	0	1	-	SNORA62|CCDS2686.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SNORA62|CCDS2686.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	10	7	11	0	0	./.	1	4	0	2	35	32	35	33	1	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748447988	3	47534835	TG	T	420	PASS	C3orf75	CCDS43082.1	r.?	-	-	Del	downstream	D	47534835	47534837	1	18	370.217	-	-	1	1	1	C3orf75|CCDS43082.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C3orf75|CCDS43082.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	13	6	13	6	0	0	./.	2	5	3	5	41	40	41	40	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748451316	3	55949958	C	CA	420	PASS	ERC2	CCDS46851.1	r.?	-	-	Ins	intronic	I	55949958	55949966	1	18	371.421	-	-	7	1	1	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ERC2|CCDS46851.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	2	7	5	39	28	40	28	7	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748463587	3	86526996	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	86526996	86527002	1	12	265.559	-	-	5	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	3	4	39	35	39	35	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748467992	3	103780200	CCTTA	C	1049	PASS	-	-	-	-	-	Del	-	D	103780200	103780208	4	96	968.414	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	7	11	10	12	43	42	43	42	10	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748478735	3	132939393	TA	T	780	PASS	TMEM108	CCDS33858.1	r.?	-	-	Del	intronic	D	132939393	132939400	1	56	699.845	-	-	6	1	1	TMEM108|CCDS33858.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TMEM108|CCDS33858.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	7	6	10	10	32	42	32	42	10	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748483967	3	148323748	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	148323748	148323755	1	6	264.355	-	-	6	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	0	5	2	35	29	35	29	5	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748493174	3	174475466	A	AT	300	PASS	NAALADL2	ENST00000434257	r.?	-	-	Ins	intronic	I	174475466	174475476	1	12	256.528	-	-	9	1	1	NAALADL2|ENST00000434257|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	NAALADL2|ENST00000434257|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	2	3	4	4	42	38	42	38	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748495210	3	179948477	GTC	G	360	PASS	-	-	-	-	-	Del	-	D	179948477	179948495	2	15	323.005	-	-	8	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	2	4	2	32	42	32	42	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748496083	3	182787633	G	GA	300	PASS	MCCC1	CCDS3241.1	r.?	-	-	Ins	intronic	I	182787633	182787643	1	12	264.957	-	-	9	1	1	MCCC1|CCDS3241.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCCC1|CCDS3241.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	2	3	36	23	37	23	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748496165	3	182996944	AAC	A	300	PASS	MCF2L2	CCDS3243.1	r.?	-	-	Del	intronic	D	182996944	182996964	2	12	269.171	-	-	9	1	-	MCF2L2|CCDS3243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCF2L2|CCDS3243.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	3	2	6	2	34	37	34	37	6	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748497345	3	185462174	C	CA	360	PASS	IGF2BP2	CCDS3273.2	r.?	-	-	Ins	intronic	I	185462174	185462184	1	15	319.393	-	-	9	1	1	IGF2BP2|CCDS3273.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IGF2BP2|CCDS3273.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	4	2	4	3	52	39	53	39	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748509420	4	17543401	TA	T	300	PASS	AC006160.2	ENST00000511740	r.?	-	-	Del	downstream	D	17543401	17543403	1	12	268.303	-	-	1	1	1	AC006160.2|ENST00000511740|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	AC006160.2|ENST00000511740|r.?|-|-|non_protein_coding:deletion:5KB_downstream_variant|SO:0000011:SO:0000159:SO:0001633	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	4	31	48	31	48	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748514602	4	31666358	TTA	T	480	PASS	-	-	-	-	-	Del	-	D	31666358	31666362	2	16	430.248	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	1	7	2	9	34	34	34	34	2	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748519775	4	43284637	TG	T	420	PASS	-	-	-	-	-	Del	-	D	43284637	43284640	1	20	376.467	-	-	2	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	4	3	7	4	42	26	42	26	7	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748526832	4	62466331	G	GT	360	PASS	LPHN3	ENST00000512091	r.?	-	-	Ins	intronic	I	62466331	62466338	1	12	319.074	-	-	6	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	1	6	1	34	25	34	25	6	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748527653	4	64751247	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	64751247	64751256	1	36	528.779	-	-	8	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	5	5	8	7	29	39	29	40	8	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748529223	4	68778428	GT	G	629	PASS	TMPRSS11A	CCDS3519.1	r.?	-	-	Del	intronic	D	68778428	68778431	1	42	590.387	-	-	2	1	1	TMPRSS11A|CCDS3519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMPRSS11A|CCDS3519.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	6	5	10	5	39	42	39	42	10	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748529982	4	70747045	GC	G	420	PASS	-	-	-	-	-	Del	-	D	70747045	70747047	1	20	376.467	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	3	6	4	26	26	26	26	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748531332	4	74030176	C	CT	360	PASS	ANKRD17	CCDS34004.1	r.?	-	-	Ins	intronic	I	74030176	74030185	1	15	319.074	-	-	8	1	1	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD17|CCDS34004.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	4	3	5	33	44	33	44	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748531494	4	74510911	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	74510911	74510921	1	15	314.859	-	-	9	1	1	-	-	./.	0	0	0	0	11	18	11	19	0	0	./.	2	4	2	4	53	39	54	39	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748532864	4	77860360	G	GGA	300	PASS	-	-	-	-	-	Ins	-	I	77860360	77860361	2	6	248.435	-	-	0	1	-	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	0	5	2	0	41	30	43	30	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748540780	4	99774862	CA	C	360	PASS	-	-	-	-	-	Del	-	D	99774862	99774867	1	12	322.686	-	-	4	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	1	5	1	5	42	41	42	41	1	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748541664	4	102274917	G	GA	997	PASS	-	-	-	-	-	Ins	-	I	102274917	102274926	1	84	892.001	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	11	12	15	51	46	51	46	12	15	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748543920	4	108892604	A	AG	840	PASS	-	-	-	-	-	Ins	-	I	108892604	108892605	1	60	741.495	-	-	0	1	-	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	9	5	16	6	34	27	35	28	16	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748545039	4	111619645	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	111619645	111619655	1	12	258.068	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	2	3	3	3	46	36	46	37	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748545988	4	114490770	TA	T	900	PASS	CAMK2D	CCDS3704.1	r.?	-	-	Del	intronic	D	114490770	114490773	1	60	806.715	-	-	2	1	1	CAMK2D|CCDS3704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAMK2D|CCDS3704.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	11	4	14	6	44	26	44	26	14	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748553943	4	136138778	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	136138778	136138788	1	12	262.884	-	-	9	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	2	3	2	3	34	41	35	41	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748554045	4	136452858	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	136452858	136452868	1	10	265.293	-	-	9	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	1	4	1	5	36	35	36	35	1	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748555580	4	140287772	TA	T	300	PASS	NAA15	CCDS43270.1	r.?	-	-	Del	intronic	D	140287772	140287776	1	10	262.282	-	-	3	1	1	NAA15|CCDS43270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAA15|CCDS43270.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	1	5	1	41	29	41	29	5	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748556769	4	143729842	CA	C	360	PASS	INPP4B	CCDS47112.1	r.?	-	-	Del	intronic	D	143729842	143729844	1	16	322.686	-	-	1	1	1	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	INPP4B|CCDS47112.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	3	3	3	4	27	45	27	45	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748563040	4	160820067	TC	T	540	PASS	-	-	-	-	-	Del	-	D	160820067	160820070	1	28	482.825	-	-	2	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	3	6	4	7	45	44	45	44	4	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748563190	4	161347633	AT	A	300	PASS	-	-	-	-	-	Del	-	D	161347633	161347635	1	10	268.905	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	1	4	1	30	19	30	19	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748564999	4	165706458	TAAA	T	629	PASS	-	-	-	-	-	Del	-	D	165706458	165706464	3	42	590.989	-	-	5	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	6	5	8	6	37	31	37	31	8	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748565963	4	167856117	AT	A	300	PASS	SPOCK3	CCDS34095.1	r.?	-	-	Del	intronic	D	167856117	167856120	1	12	268.905	-	-	2	1	1	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SPOCK3|CCDS34095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	9	7	42	25	42	25	9	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748570952	4	180491226	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	180491226	180491234	1	15	316.063	-	-	7	1	1	-	-	./.	0	0	0	0	14	7	14	10	0	0	./.	2	4	3	4	41	33	41	45	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748571568	4	181743196	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	181743196	181743204	1	12	265.895	-	-	7	1	-	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	3	2	6	3	44	41	44	41	6	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748576771	4	190845878	T	TA	335	PASS	-	-	-	-	-	Ins	-	I	190845878	190845885	1	36	531.79	-	-	6	1	1	-	-	./.	0	0	0	0	28	24	28	24	0	0	./.	5	5	6	5	107	79	108	80	6	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748580896	5	9265604	CG	C	569	PASS	SEMA5A	CCDS3875.1	r.?	-	-	Del	intronic	D	9265604	9265608	1	35	534.557	-	-	3	1	1	SEMA5A|CCDS3875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA5A|ENST00000514923|r.53delC|c.53delC|p.R19fs*75|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	8	13	8	0	0	./.	4	6	6	7	47	43	47	43	6	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748582724	5	13987807	C	CA	897	PASS	-	-	-	-	-	Ins	-	I	13987807	13987814	1	84	891.227	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	11	6	13	11	52	51	53	53	13	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748592308	5	36716041	G	GGA	509	PASS	-	-	-	-	-	Ins	-	I	36716041	36716042	2	24	474.057	-	-	0	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	7	2	0	0	49	27	49	27	7	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748595152	5	44263588	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	44263588	44263596	1	12	265.171	-	-	7	1	1	-	-	./.	0	0	0	0	9	6	9	6	0	0	./.	2	3	3	3	33	44	33	45	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748600734	5	63895222	TGAG	T	300	PASS	RGS7BP	CCDS34170.1	r.?	-	-	Del	intronic	D	63895222	63895243	3	12	266.375	-	-	6	1	-	RGS7BP|CCDS34170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7BP|CCDS34170.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	2	41	23	41	23	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748603493	5	72603477	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	72603477	72603487	1	10	266.375	-	-	9	1	1	-	-	./.	0	0	0	0	15	9	16	9	0	0	./.	4	1	4	1	36	39	39	39	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748604487	5	75409746	TAC	T	300	PASS	SV2C	ENST00000502798	r.?	-	-	Del	intronic	D	75409746	75409766	2	10	269.386	-	-	9	1	-	SV2C|ENST00000502798|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SV2C|ENST00000502798|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	2	5	39	33	39	33	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748606534	5	80107673	GT	G	689	PASS	MSH3	CCDS34195.1	r.?	-	-	Del	intronic	D	80107673	80107678	1	45	646.526	-	-	4	1	1	MSH3|CCDS34195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSH3|CCDS34195.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	8	4	8	6	42	34	42	34	8	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748607248	5	82051775	ATACTC	A	851	PASS	-	-	-	-	-	Del	-	D	82051775	82051781	5	84	913.503	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	6	11	8	12	38	40	38	41	8	13	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748618350	5	116473768	CTA	C	300	PASS	-	-	-	-	-	Del	-	D	116473768	116473782	2	12	268.182	-	-	6	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	2	3	25	40	25	40	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748619878	5	120906457	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	120906457	120906464	1	12	264.569	-	-	6	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	3	2	4	5	23	36	23	36	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748621285	5	125252354	G	GA	1169	PASS	-	-	-	-	-	Ins	-	I	125252354	125252361	1	120	1065.5	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	9	0	0	./.	9	11	13	14	40	57	41	57	13	14	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748624452	5	134320191	CA	C	600	PASS	CATSPER3	CCDS4181.1	r.?	-	-	Del	intronic	D	134320191	134320195	1	32	538.772	-	-	3	1	1	CATSPER3|CCDS4181.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CATSPER3|CCDS4181.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	10	17	10	0	0	./.	7	3	9	7	45	37	45	37	9	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748625714	5	137963717	AG	A	300	PASS	-	-	-	-	-	Del	-	D	137963717	137963719	1	10	267.58	-	-	1	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	4	1	4	1	39	26	39	26	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748630191	5	150568172	AG	A	300	PASS	CCDC69	CCDS4312.1	r.?	-	-	Del	intronic	D	150568172	150568174	1	6	258.549	-	-	1	1	1	CCDC69|CCDS4312.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC69|CCDS4312.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	0	5	1	6	13	43	13	43	1	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748631624	5	154484371	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	154484371	154484373	1	30	479.476	-	-	1	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	4	5	9	6	41	29	41	31	9	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748632032	5	155867026	TGA	T	1020	PASS	SGCD	CCDS47325.1	r.?	-	-	Del	intronic	D	155867026	155867029	2	90	914.106	-	-	1	1	1	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCD|CCDS47325.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	9	8	12	9	35	39	35	39	12	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748632276	5	156525431	A	AC	300	PASS	HAVCR2	CCDS4333.1	r.?	-	-	Ins	intronic	I	156525431	156525432	1	10	266.375	-	-	0	1	1	HAVCR2|CCDS4333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HAVCR2|CCDS4333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	10	3	10	0	0	./.	1	4	1	6	28	38	30	38	1	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748633123	5	158528308	AG	A	360	PASS	EBF1	CCDS4343.1	r.?	-	-	Del	upstream	D	158528308	158528312	1	16	323.263	-	-	3	1	1	EBF1|CCDS4343.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AC134043.1|ENST00000499583|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	3	4	3	35	33	35	33	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748633930	5	160718141	A	AAT	300	PASS	GABRB2	CCDS4355.1	r.4703_4704insau	c.?	p.?	Ins	3'UTR variant	I	160718141	160718155	2	12	263.365	-	-	6	1	1	GABRB2|CCDS4355.1|r.4703_4704insau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	GABRB2|CCDS4355.1|r.4703_4704insau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	15	12	16	0	0	./.	3	2	6	2	35	24	35	25	6	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748635529	5	165228374	TA	T	623	PASS	-	-	-	-	-	Del	-	D	165228374	165228379	1	36	592.649	-	-	4	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	8	7	8	35	24	35	24	7	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748639633	5	175924853	GA	G	360	PASS	FAF2	CCDS34296.1	r.?	-	-	Del	intronic	D	175924853	175924859	1	16	323.263	-	-	5	1	1	FAF2|CCDS34296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAF2|CCDS34296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	8	21	8	0	0	./.	3	3	4	3	39	31	39	31	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748645339	6	8529302	TA	T	300	PASS	AL135912.1	ENST00000498984	r.?	-	-	Del	intronic	D	8529302	8529312	1	12	268.245	-	-	9	1	1	AL135912.1|ENST00000498984|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL135912.1|ENST00000498984|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	3	2	4	2	35	34	35	34	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748652233	6	25111718	G	GT	360	PASS	CMAH	ENST00000436589	r.?	-	-	Ins	intronic	I	25111718	25111725	1	15	319.727	-	-	6	1	1	CMAH|ENST00000436589|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CMAH|ENST00000436589|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	2	4	4	5	27	28	27	29	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748660709	6	43448055	A	AT	600	PASS	TJAP1	CCDS4898.1	r.?	-	-	Ins	intronic	I	43448055	43448063	1	32	532.878	-	-	7	1	1	TJAP1|CCDS4898.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TJAP1|CCDS4898.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	3	7	5	9	31	37	32	39	5	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748661196	6	44564955	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	44564955	44564965	1	12	265.837	-	-	9	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	2	3	36	36	36	36	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748663207	6	50718385	A	AT	360	PASS	TFAP2D	CCDS4933.1	r.?	-	-	Ins	intronic	I	50718385	50718392	1	16	319.727	-	-	6	1	1	TFAP2D|CCDS4933.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TFAP2D|CCDS4933.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	13	13	0	0	./.	3	3	3	4	25	42	26	42	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748665242	6	56536747	TGAG	T	449	PASS	DST	CCDS47441.1	r.?	-	-	Del	intronic	D	56536747	56536758	3	24	429.915	-	-	3	1	1	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DST|CCDS47441.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	5	3	6	4	36	43	36	43	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748666298	6	57516733	AC	A	480	PASS	PRIM2	ENST00000425433	r.?	-	-	Del	downstream	D	57516733	57516735	1	25	431.119	-	-	1	1	1	PRIM2|ENST00000425433|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRIM2|ENST00000425433|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	33	27	33	27	0	0	./.	4	4	6	8	92	94	92	94	6	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748666961	6	58760369	TAGA	T	360	PASS	-	-	-	-	-	Del	-	D	58760369	58760378	3	15	323.339	-	-	2	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	4	2	6	35	34	35	34	2	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748667715	6	63879922	TA	T	360	PASS	-	-	-	-	-	Del	-	D	63879922	63879927	1	16	323.339	-	-	4	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	3	3	3	7	19	26	19	26	3	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748680904	6	103013612	TC	T	300	PASS	-	-	-	-	-	Del	-	D	103013612	103013616	1	10	265.837	-	-	3	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	1	4	2	4	31	27	31	27	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748681149	6	103901893	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	103901893	103901901	1	14	373.014	-	-	7	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	1	8	2	47	23	47	23	8	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748682755	6	108131051	CCT	C	300	PASS	SCML4	CCDS5060.2	r.?	-	-	Del	intronic	D	108131051	108131068	2	12	267.643	-	-	8	1	1	SCML4|CCDS5060.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SCML4|CCDS5060.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	2	3	2	3	33	43	33	43	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748706440	7	1357073	C	CA	269	PASS	-	-	-	-	-	Ins	-	I	1357073	1357083	1	12	251.881	-	-	9	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	3	2	0	1	30	22	30	22	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748710731	7	10255696	TAG	T	360	PASS	-	-	-	-	-	Del	-	D	10255696	10255701	2	15	322.005	-	-	2	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	4	4	29	45	29	45	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748711460	7	12031212	AT	A	300	PASS	-	-	-	-	-	Del	-	D	12031212	12031216	1	10	269.341	-	-	3	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	6	3	40	28	40	28	6	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748720340	7	33897732	GCA	G	300	PASS	-	-	-	-	-	Del	-	D	33897732	33897749	2	12	269.341	-	-	8	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	4	4	35	49	35	49	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748722441	7	39430967	C	CT	300	PASS	POU6F2	CCDS34620.2	r.?	-	-	Ins	intronic	I	39430967	39430976	1	12	266.33	-	-	8	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	3	2	5	42	29	42	29	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748727783	7	53113977	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	53113977	53113983	1	21	424.322	-	-	5	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	6	2	6	29	43	29	44	2	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748728072	7	53911991	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	53911991	53912001	1	10	266.33	-	-	9	1	1	-	-	./.	0	0	0	0	18	6	18	6	0	0	./.	4	1	4	1	51	37	51	37	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748728927	7	56045991	CTTTT	C	420	PASS	GBAS	CCDS5521.1	r.?	-	-	Del	intronic	D	56045991	56045999	4	18	377.077	-	-	7	1	1	GBAS|CCDS5521.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GBAS|CCDS5521.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	5	2	6	2	32	37	32	37	6	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748734400	7	67258915	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	67258915	67258925	1	6	266.33	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	0	5	0	5	56	41	56	42	0	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748734559	7	67489051	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	67489051	67489061	1	15	317.79	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	13	10	0	0	./.	2	4	7	4	51	43	51	44	7	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748735080	7	68286108	ATC	A	420	PASS	-	-	-	-	-	Del	-	D	68286108	68286117	2	20	377.077	-	-	4	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	3	4	4	5	42	43	42	43	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748735791	7	69567517	TCA	T	269	PASS	AUTS2	CCDS5539.1	r.?	-	-	Del	intronic	D	69567517	69567537	2	12	269.341	-	-	9	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	4	2	40	23	40	23	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748737838	7	73398975	CTG	C	300	PASS	-	-	-	-	-	Del	-	D	73398975	73398980	2	12	269.341	-	-	2	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	3	2	39	35	39	35	3	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748742720	7	85642381	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	85642381	85642391	1	12	265.126	-	-	9	1	1	-	-	./.	0	0	0	0	10	6	11	6	0	0	./.	2	3	3	3	48	41	48	41	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748746137	7	96008529	C	CACACACAT	261	PASS	-	-	-	-	-	Ins	-	I	96008529	96008531	8	30	439.659	-	-	0	1	-	-	-	./.	0	0	0	0	5	9	6	9	0	0	./.	5	4	6	6	37	17	37	17	6	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748749986	7	104017288	C	CA	629	PASS	LHFPL3	ENST00000424859	r.?	-	-	Ins	intronic	I	104017288	104017289	1	42	582.315	-	-	0	1	1	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LHFPL3|ENST00000424859|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	6	6	7	39	43	39	43	6	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748754605	7	117520569	AG	A	420	PASS	-	-	-	-	-	Del	-	D	117520569	117520571	1	18	377.077	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	2	5	5	5	32	31	32	31	5	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748758973	7	129861706	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	129861706	129861707	1	12	259.106	-	-	0	1	-	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	2	3	3	5	30	32	32	33	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748763941	7	142518460	GA	G	420	PASS	-	-	-	-	-	Del	-	D	142518460	142518463	1	20	377.077	-	-	2	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	4	3	9	4	31	33	31	33	9	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748766930	7	150478259	TG	T	660	PASS	-	-	-	-	-	Del	-	D	150478259	150478262	1	36	588.937	-	-	2	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	8	3	12	4	44	33	44	33	12	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748769595	7	156505925	TGA	T	300	PASS	LMBR1	CCDS5945.1	r.?	-	-	Del	intronic	D	156505925	156505941	2	6	269.341	-	-	7	1	1	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LMBR1|CCDS5945.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	0	5	0	5	39	34	39	34	0	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748774112	8	8798738	GTA	G	416	PASS	-	-	-	-	-	Del	-	D	8798738	8798741	2	24	449.242	-	-	1	1	1	-	-	./.	0	0	0	0	3	12	3	12	0	0	./.	7	2	7	5	26	21	28	21	9	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748781072	8	26115050	T	TC	300	PASS	ENSG00000228451	ENST00000434116	r.?	-	-	Ins	intronic	I	26115050	26115051	1	10	261.821	-	-	0	1	1	ENSG00000228451|ENST00000434116|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000228451|ENST00000434116|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	1	5	1	41	31	42	31	5	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748782723	8	30201374	AT	A	300	PASS	-	-	-	-	-	Del	-	D	30201374	30201383	1	6	269.647	-	-	8	1	-	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	0	1	1	27	20	27	20	6	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748785324	8	37499056	TAAAATAAAA	T	336	PASS	-	-	-	-	-	Del	-	D	37499056	37499068	9	49	633.306	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	6	6	9	102	121	102	121	6	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748785410	8	37598790	TGA	T	300	PASS	ERLIN2	CCDS6095.1	r.?	-	-	Del	intronic	D	37598790	37598809	2	12	269.647	-	-	9	1	1	ERLIN2|CCDS6095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERLIN2|CCDS6095.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	2	3	6	4	93	124	93	124	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748786117	8	38192283	C	CA	360	PASS	WHSC1L1	CCDS43729.1	r.?	-	-	Ins	intronic	I	38192283	38192287	1	7	312.138	-	-	3	1	1	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	WHSC1L1|CCDS43729.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	9	5	10	0	0	./.	6	0	8	8	73	217	74	220	8	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748786555	8	38617546	CT	C	600	PASS	TACC1	ENST00000330691	r.?	-	-	Del	intronic	D	38617546	38617554	1	35	538.693	-	-	7	1	1	TACC1|ENST00000330691|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TACC1|ENST00000330691|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	16	4	16	0	0	./.	6	4	8	4	101	124	101	124	8	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748786705	8	38813503	A	AT	300	PASS	PLEKHA2	ENST00000388745	r.?	-	-	Ins	intronic	I	38813503	38813513	1	10	259.412	-	-	9	1	1	PLEKHA2|ENST00000388745|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHA2|ENST00000388745|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	1	4	5	4	85	84	85	86	5	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748787464	8	39953229	TC	T	360	PASS	-	-	-	-	-	Del	-	D	39953229	39953231	1	7	323.577	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	6	0	19	0	146	132	146	132	19	0	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748788402	8	41166116	TG	T	929	PASS	SFRP1	CCDS34886.1	r.?	-	-	Del	intronic	D	41166116	41166120	1	80	852.034	-	-	3	1	1	SFRP1|CCDS34886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SFRP1|CCDS34886.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	9	7	11	10	162	180	162	180	11	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748791055	8	51400561	AG	A	389	PASS	SNTG1	CCDS6147.1	r.?	-	-	Del	intronic	D	51400561	51400563	1	18	377.506	-	-	1	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	5	3	5	31	32	31	32	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748800190	8	77238123	CAG	C	540	PASS	-	-	-	-	-	Del	-	D	77238123	77238143	2	24	484.161	-	-	9	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	2	7	2	8	37	38	37	38	2	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748801817	8	81646207	A	AT	540	PASS	ZNF704	CCDS34913.1	r.?	-	-	Ins	intronic	I	81646207	81646216	1	30	479.345	-	-	8	1	1	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF704|CCDS34913.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	5	4	6	9	46	36	48	36	6	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748802609	8	83765940	AACC	A	660	PASS	-	-	-	-	-	Del	-	D	83765940	83765944	3	30	589.612	-	-	1	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	2	9	3	10	32	42	32	42	3	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748803717	8	87208151	GT	G	420	PASS	-	-	-	-	-	Del	-	D	87208151	87208155	1	18	377.506	-	-	3	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	5	2	5	2	30	36	30	36	5	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748804363	8	88717141	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	88717141	88717142	1	36	530.866	-	-	0	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	5	5	7	6	41	48	42	48	7	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748809958	8	103741330	CCCCCTGCCCACAATCAAGTGCGATCTCCATGTCACAGCATTCAGGGGTCAAG	C	300	PASS	-	-	-	-	-	Del	-	D	103741330	103741387	52	12	269.045	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	3	0	0	57	28	57	28	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748811999	8	109209168	G	GA	480	PASS	EIF3E	CCDS6308.1	r.?	-	-	Ins	downstream	I	109209168	109209174	1	21	426.619	-	-	5	1	1	EIF3E|CCDS6308.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	EIF3E|CCDS6308.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	5	10	5	10	0	0	./.	6	2	6	3	46	33	46	33	6	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748812040	8	109298702	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	109298702	109298719	2	10	269.647	-	-	8	1	1	-	-	./.	0	0	0	0	7	16	7	16	0	0	./.	1	4	3	4	38	50	38	50	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748813382	8	113452398	AGTAAAT	A	261	PASS	CSMD3	CCDS6315.1	r.?	-	-	Del	intronic	D	113452398	113452408	6	28	485.365	-	-	1	1	1	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD3|CCDS6315.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	5	12	5	0	0	./.	6	3	6	3	40	38	40	38	6	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748814585	8	116574576	CTTT	C	480	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116574576	116574583	3	24	431.436	-	-	6	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	3	7	4	29	30	29	30	7	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748815326	8	118666630	AAATTATTTCATCTCTC	A	435	PASS	-	-	-	-	-	Del	-	D	118666630	118666647	16	72	808.942	-	-	1	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	7	8	8	8	29	30	29	30	8	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748818868	8	127470228	G	GGT	329	PASS	-	-	-	-	-	Ins	-	I	127470228	127470230	2	7	307.923	-	-	0	1	1	-	-	./.	0	0	0	0	9	3	9	3	0	0	./.	0	6	2	11	30	36	33	36	2	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748821325	8	134380527	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	134380527	134380535	1	12	264.831	-	-	7	1	1	-	-	./.	0	0	0	0	10	4	10	4	0	0	./.	2	3	3	7	50	41	51	41	3	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748822013	8	136356849	T	TAAATA	545	PASS	-	-	-	-	-	Ins	-	I	136356849	136356875	5	27	509.192	-	-	5	1	-	-	-	./.	0	0	0	0	8	7	9	8	0	0	./.	2	8	3	12	39	41	40	41	3	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748828462	9	8454966	C	CT	600	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	8454966	8454968	1	32	534.387	-	-	1	1	1	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	3	7	7	47	40	47	41	7	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748830562	9	13607158	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	13607158	13607167	1	12	265.989	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	15	16	0	0	./.	2	3	2	5	31	41	33	42	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748851960	9	89436764	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	89436764	89436772	1	12	267.193	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	10	10	0	0	./.	2	3	2	4	23	33	23	33	2	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748860005	9	113521904	G	GA	420	PASS	MUSK	CCDS48005.1	r.?	-	-	Ins	intronic	I	113521904	113521912	1	20	373.469	-	-	7	1	1	MUSK|CCDS48005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MUSK|CCDS48005.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	4	7	5	42	32	42	33	7	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748869211	9	137781427	CGT	C	360	PASS	FCN2	CCDS6983.1	r.?	-	-	Del	downstream	D	137781427	137781443	2	15	324.244	-	-	7	1	1	FCN2|CCDS6983.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FCN2|CCDS6983.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	9	8	9	0	0	./.	4	2	4	2	36	17	36	17	4	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748873083	X	9794453	CT	C	360	PASS	SHROOM2	CCDS14135.1	r.?	-	-	Del	intronic	D	9794453	9794463	1	16	317.648	-	-	9	1	1	SHROOM2|CCDS14135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHROOM2|CCDS14135.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	3	3	3	3	55	46	55	46	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748875030	X	16301486	CATGTGGTCACATTTACAGTAATATCCAA	C	522	PASS	-	-	-	-	-	Del	-	D	16301486	16301520	28	99	971.609	-	-	1	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	8	10	3	9	34	25	39	26	8	10	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748881259	X	36332849	TGA	T	269	PASS	CXorf30	ENST00000378653	r.?	-	-	Del	intronic	D	36332849	36332865	2	12	267.216	-	-	7	1	-	CXorf30|ENST00000378653|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CXorf30|ENST00000378653|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	4	3	41	33	41	33	4	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748881285	X	36596071	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	36596071	36596090	2	10	270.226	-	-	9	1	-	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	1	4	2	5	33	40	33	40	2	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748884045	X	45444057	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	45444057	45444077	2	15	323.669	-	-	9	1	-	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	4	2	5	2	41	41	41	41	5	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748884181	X	45962501	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	45962501	45962509	1	10	267.216	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	17	0	0	./.	4	1	4	1	37	37	38	37	4	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748885469	X	48994521	C	CT	629	PASS	-	-	-	-	-	Ins	-	I	48994521	48994531	1	42	584.262	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	5	6	8	8	39	38	41	38	8	8	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748885885	X	50886475	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	50886475	50886482	1	10	267.216	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	4	4	32	39	32	39	4	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748885937	X	51149512	AAC	A	300	PASS	CXorf67	ENST00000342995	r.?	-	-	Del	upstream	D	51149512	51149532	2	6	266.012	-	-	9	1	-	CXorf67|ENST00000342995|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CXorf67|ENST00000342995|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	8	9	8	9	0	0	./.	0	5	0	5	33	43	33	43	0	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748887067	X	55161299	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	55161299	55161308	1	20	373.5	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	4	3	5	33	50	33	52	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748887881	X	61722976	TA	T	279	PASS	-	-	-	-	-	Del	-	D	61722976	61722978	1	19	972.813	-	-	1	1	1	-	-	./.	0	0	0	0	30	21	30	21	0	0	./.	18	0	0	1	85	61	103	61	18	1	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748887975	X	62045218	TA	T	624	PASS	-	-	-	-	-	Del	-	D	62045218	62045228	1	40	593.293	-	-	9	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	4	7	5	11	42	44	42	44	5	11	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748891699	X	76626623	C	CT	740	PASS	-	-	-	-	-	Ins	-	I	76626623	76626630	1	63	748.204	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	8	6	9	39	39	41	40	6	9	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748891765	X	76924425	CAGGAA	C	358	PASS	ATRX	CCDS14434.1	r.?	-	-	Del	intronic	D	76924425	76924438	5	20	378.316	-	-	2	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	3	4	5	34	41	34	41	4	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748892550	X	79378714	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	79378714	79378721	1	16	320.659	-	-	6	1	1	-	-	./.	0	0	0	0	13	9	13	10	0	0	./.	3	3	5	7	31	43	31	43	5	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748892777	X	80219685	G	GT	286	PASS	-	-	-	-	-	Ins	-	I	80219685	80219692	1	12	267.216	-	-	6	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	2	3	6	4	36	33	36	34	6	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748893186	X	81587575	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	81587575	81587584	1	16	320.057	-	-	8	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	3	5	3	27	26	27	27	5	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748893347	X	82202422	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	82202422	82202426	1	15	320.659	-	-	3	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	2	4	6	6	31	37	31	37	6	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748893740	X	83724366	GT	G	420	PASS	HDX	CCDS35342.1	r.476delA	c.364delA	p.T122fs*38	Del	frameshift	D	83724366	83724369	1	20	377.112	-	-	2	1	1	HDX|CCDS35342.1|r.476delA|c.364delA|p.T122fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HDX|CCDS35342.1|r.476delA|c.364delA|p.T122fs*38|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	10	11	10	0	0	./.	3	4	3	7	36	41	36	41	3	7	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748895699	X	90042167	T	TTTC	263	PASS	-	-	-	-	-	Ins	-	I	90042167	90042173	3	15	313.434	-	-	1	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	2	5	2	20	28	20	28	5	2	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748900939	X	108781360	GGTGA	G	689	PASS	NXT2	CCDS14546.1	r.369+1_369+4delguga	c.267+1_267+4delgtga	p.?	Del	ess splice	D	108781360	108781368	4	40	648.542	-	-	1	1	1	NXT2|CCDS14546.1|r.369+1_369+4delguga|c.267+1_267+4delgtga|p.?|protein_coding:CDS:extended_cis_splice_site:deletion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000159:SO:CGPX03:SO:0001576	NXT2|CCDS14546.1|r.369+1_369+4delguga|c.267+1_267+4delgtga|p.?|protein_coding:CDS:extended_cis_splice_site:deletion:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX06:SO:0000159:SO:CGPX03:SO:0001576	./.	0	0	0	0	10	13	10	13	0	0	./.	3	9	4	12	43	36	43	36	4	12	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748901279	X	110004033	A	AT	360	PASS	CHRDL1	CCDS48149.1	r.?	-	-	Ins	intronic	I	110004033	110004042	1	15	320.659	-	-	8	1	1	CHRDL1|CCDS48149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHRDL1|CCDS48149.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	3	4	38	43	39	44	3	4	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748901667	X	111637956	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	111637956	111637958	1	42	584.864	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	13	0	0	./.	6	5	7	5	33	27	33	28	7	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748903026	X	115666413	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	115666413	115666420	1	12	267.216	-	-	6	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	3	2	3	3	28	27	28	27	3	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748906614	X	126344269	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	126344269	126344275	1	12	320.659	-	-	5	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	5	1	5	31	33	31	33	1	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748907168	X	128456904	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	128456904	128456910	1	36	533.227	-	-	5	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	5	5	9	6	42	42	44	42	9	6	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748909419	X	135903236	CT	C	840	PASS	-	-	-	-	-	Del	-	D	135903236	135903241	1	63	755.429	-	-	4	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	6	8	7	13	40	37	40	37	7	13	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748909637	X	136533000	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	136533000	136533018	2	12	269.624	-	-	8	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	2	3	2	3	39	27	39	27	2	3	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748910615	X	139747591	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	139747591	139747599	1	15	320.659	-	-	7	1	1	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	2	4	3	5	41	43	41	43	3	5	1	1	1	1	1	1	1	1
2731396	PD14443a	PD14443b	2748911697	X	143306046	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	143306046	143306054	1	15	320.659	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	4	5	4	44	22	44	22	5	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745742027	1	10441112	G	GA	660	PASS	KIF1B	CCDS111.1	r.?	-	-	Ins	downstream	I	10441112	10441116	1	42	584.461	-	-	3	1	1	KIF1B|CCDS111.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KIF1B|ENST00000377081|r.8203_8204insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	11	12	11	0	0	./.	6	5	8	7	33	28	35	28	8	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745745526	1	19017970	GTTGT	G	809	PASS	PAX7	CCDS44074.1	r.?	-	-	Del	intronic	D	19017970	19017989	4	60	752.288	-	-	4	1	1	PAX7|CCDS44074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAX7|CCDS44074.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	9	6	11	27	36	27	36	6	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745746789	1	22153700	T	TA	300	PASS	LDLRAD2	CCDS30624.1	r.?	-	-	Ins	downstream	I	22153700	22153710	1	12	265.664	-	-	9	1	1	LDLRAD2|CCDS30624.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	HSPG2|ENST00000374695|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	2	3	32	41	32	41	2	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745749244	1	28274439	TA	T	720	PASS	SMPDL3B	CCDS30655.1	r.?	-	-	Del	intronic	D	28274439	28274445	1	48	640.002	-	-	5	1	1	SMPDL3B|CCDS30655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMPDL3B|CCDS30655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	7	5	9	7	34	16	34	16	9	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745751904	1	36093249	CA	C	300	PASS	PSMB2	CCDS394.1	r.?	-	-	Del	intronic	D	36093249	36093259	1	12	268.674	-	-	9	1	1	PSMB2|CCDS394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMB2|CCDS394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	18	6	18	0	0	./.	3	2	4	2	24	33	24	33	4	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745753239	1	39617933	CTG	C	360	PASS	MACF1	CCDS435.1	r.?	-	-	Del	intronic	D	39617933	39617938	2	16	322.409	-	-	2	1	1	MACF1|CCDS435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MACF1|CCDS435.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	3	3	4	16	12	16	12	3	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745759971	1	60520241	C	CA	269	PASS	C1orf87	CCDS614.1	r.?	-	-	Ins	intronic	I	60520241	60520244	1	10	264.46	-	-	2	1	1	C1orf87|CCDS614.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf87|CCDS614.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	1	4	3	5	19	23	19	23	3	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745766705	1	80965198	CTATGA	C	385	PASS	-	-	-	-	-	Del	-	D	80965198	80965207	5	28	483.614	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	6	3	7	3	26	19	26	20	7	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745784779	1	150883885	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	150883885	150883895	1	12	254.827	-	-	9	1	1	-	-	./.	0	0	0	0	15	19	15	19	0	0	./.	3	2	3	3	49	56	49	56	3	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745790101	1	164212065	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	164212065	164212075	1	12	252.419	-	-	9	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	2	3	3	4	46	38	46	39	3	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745793525	1	173450428	CTT	C	360	PASS	PRDX6	CCDS1307.1	r.?	-	-	Del	intronic	D	173450428	173450431	2	15	322.409	-	-	2	1	1	PRDX6|CCDS1307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRDX6|CCDS1307.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	19	14	19	0	0	./.	2	4	2	4	29	31	29	31	2	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745794140	1	175341940	TCCCTGAGATCATCTC	T	551	PASS	TNR	CCDS1318.1	r.?	-	-	Del	intronic	D	175341940	175341958	15	110	1019.76	-	-	1	1	1	TNR|CCDS1318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNR|CCDS1318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	10	9	10	8	29	25	29	26	10	9	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745810560	1	218684893	A	AG	300	PASS	C1orf143	ENST00000443836	r.?	-	-	Ins	intronic	I	218684893	218684894	1	10	262.654	-	-	0	1	-	C1orf143|ENST00000443836|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C1orf143|ENST00000443836|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	8	12	0	0	./.	4	1	8	6	29	19	30	20	8	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745827946	10	9799447	T	TAAGAG	627	PASS	-	-	-	-	-	Ins	-	I	9799447	9799449	5	48	608.568	-	-	0	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	7	5	8	6	22	26	22	27	8	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745836011	10	30649888	CT	C	569	PASS	MTPAP	ENST00000358107	r.?	-	-	Del	intronic	D	30649888	30649896	1	36	539.752	-	-	7	1	1	MTPAP|ENST00000358107|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTPAP|ENST00000358107|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	5	5	6	11	33	28	33	28	6	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745837505	10	34681521	A	AT	660	PASS	PARD3	CCDS7178.1	r.?	-	-	Ins	intronic	I	34681521	34681527	1	36	586.502	-	-	5	1	1	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3|CCDS7178.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	8	5	11	17	37	18	37	5	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745842453	10	51008455	CT	C	540	PASS	-	-	-	-	-	Del	-	D	51008455	51008465	1	24	482.766	-	-	9	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	7	2	9	2	21	26	21	26	9	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745863272	10	118369259	C	CG	420	PASS	PNLIPRP1	CCDS7595.1	r.?	-	-	Ins	downstream	I	118369259	118369264	1	20	365.785	-	-	4	1	1	PNLIPRP1|CCDS7595.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PNLIPRP1|CCDS7595.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	3	7	3	7	0	0	./.	4	3	0	1	15	23	15	23	4	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745875249	11	17002314	C	CA	360	PASS	PLEKHA7	CCDS31434.1	r.?	-	-	Ins	intronic	I	17002314	17002322	1	12	317.038	-	-	7	1	1	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHA7|CCDS31434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	1	5	2	6	30	29	30	29	2	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745887070	11	50146238	ACTGT	A	280	PASS	-	-	-	-	-	Del	-	D	50146238	50146243	4	15	324.263	-	-	1	1	1	-	-	./.	0	0	0	0	13	6	13	6	0	0	./.	2	4	3	10	19	24	19	24	3	10	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745887364	11	54994726	CTCAGAATGCTTCTGTCTAGTTTTCA	C	261	PASS	-	-	-	-	-	Del	-	D	54994726	54994753	25	24	486.395	-	-	1	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	7	2	6	20	38	21	39	3	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745889140	11	61103525	C	CA	360	PASS	DDB1	CCDS31576.1	r.?	-	-	Ins	upstream	I	61103525	61103529	1	15	319.447	-	-	3	1	1	DDB1|CCDS31576.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	DAK|CCDS8003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	4	6	25	25	25	25	4	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745903139	11	101579323	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	101579323	101579332	1	20	373.49	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	17	0	0	./.	4	3	4	4	26	27	26	27	4	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745904281	11	104728982	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	104728982	104729000	2	10	270.219	-	-	8	1	-	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	1	4	1	27	18	27	18	4	1	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745915170	12	2895374	A	AG	480	PASS	-	-	-	-	-	Ins	-	I	2895374	2895379	1	21	417.339	-	-	4	1	1	-	-	./.	0	0	0	0	5	5	5	5	0	0	./.	6	2	9	3	26	15	26	15	9	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745920784	12	17332594	T	TA	267	PASS	-	-	-	-	-	Ins	-	I	17332594	17332604	1	15	320.681	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	8	0	0	./.	2	4	5	6	38	36	38	36	5	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745920908	12	17767229	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	17767229	17767237	1	40	640.759	-	-	7	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	9	6	11	26	37	27	37	6	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745926887	12	33648854	TA	T	728	PASS	-	-	-	-	-	Del	-	D	33648854	33648861	1	56	702.032	-	-	6	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	7	6	12	8	31	30	31	30	12	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745934784	12	59675158	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	59675158	59675164	1	15	320.681	-	-	5	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	4	2	5	27	22	27	22	2	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745947537	12	99458079	AT	A	420	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99458079	99458081	1	14	375.933	-	-	1	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	6	1	8	2	24	24	24	24	8	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745958051	12	127469138	ATT	A	660	PASS	AC078878.2	ENST00000512624	r.?	-	-	Del	intronic	D	127469138	127469143	2	42	593.935	-	-	4	1	1	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC078878.2|ENST00000512624|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	5	6	6	10	16	32	16	32	6	10	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745959155	12	130027662	A	AGATG	449	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Ins	intronic	I	130027662	130027685	4	24	399.879	-	-	5	1	-	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	5	3	5	4	29	22	30	22	5	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745970514	13	43906098	TA	T	360	PASS	ENOX1	CCDS9389.1	r.?	-	-	Del	intronic	D	43906098	43906101	1	12	325.1	-	-	2	1	1	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	1	5	4	6	20	30	20	30	4	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745982046	13	77016548	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	77016548	77016557	1	10	267.906	-	-	8	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	1	4	4	6	31	29	31	29	4	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745990633	13	103597741	A	AT	960	PASS	-	-	-	-	-	Ins	-	I	103597741	103597749	1	77	856.698	-	-	7	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	10	6	12	7	32	31	32	31	12	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2745997310	14	26774563	T	TA	960	PASS	-	-	-	-	-	Ins	-	I	26774563	26774565	1	77	854.568	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	6	10	9	13	27	32	27	32	9	13	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746010071	14	65013531	TA	T	300	PASS	HSPA2	CCDS9766.1	r.?	-	-	Del	downstream	D	65013531	65013533	1	6	271.192	-	-	1	1	1	HSPA2|CCDS9766.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C14orf50|CCDS9767.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	8	7	8	0	0	./.	0	5	1	5	27	35	27	35	1	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746011638	14	70496178	AG	A	840	PASS	SMOC1	CCDS32110.1	r.?	-	-	Del	intronic	D	70496178	70496182	1	64	758.735	-	-	3	1	1	SMOC1|CCDS32110.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMOC1|CCDS32110.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	7	7	8	7	16	31	16	31	8	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746014029	14	76599283	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	76599283	76599297	2	12	271.192	-	-	6	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	2	32	33	32	33	3	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746020020	14	93953021	A	AG	329	PASS	KIAA1409	CCDS9911.2	r.?	-	-	Ins	intronic	I	93953021	93953022	1	12	313.389	-	-	0	1	-	KIAA1409|CCDS9911.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KIAA1409|CCDS9911.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	5	1	5	3	25	14	28	14	5	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746023014	14	103306741	A	AT	420	PASS	TRAF3	CCDS9975.1	r.?	-	-	Ins	intronic	I	103306741	103306751	1	18	371.24	-	-	9	1	1	TRAF3|CCDS9975.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TRAF3|CCDS9975.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	2	7	2	26	25	27	25	7	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746028135	15	28978830	C	CA	259	PASS	WHAMML2	ENST00000512149	r.?	-	-	Ins	upstream	I	28978830	28978839	1	18	374.999	-	-	8	1	1	WHAMML2|ENST00000512149|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	WHAMML2|ENST00000512149|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	12	7	12	7	0	0	./.	2	5	3	9	23	38	23	39	3	9	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746039277	15	60763994	A	AC	360	PASS	NARG2	CCDS10176.1	r.?	-	-	Ins	intronic	I	60763994	60763996	1	12	316.525	-	-	1	1	1	NARG2|CCDS10176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NARG2|CCDS10176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	12	9	0	0	./.	1	5	1	5	21	29	22	29	1	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746043274	15	71529568	AG	A	600	PASS	THSD4	CCDS10238.2	r.?	-	-	Del	intronic	D	71529568	71529570	1	35	541.991	-	-	1	1	1	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THSD4|CCDS10238.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	6	4	6	5	20	18	20	18	6	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746046891	15	82495627	TTACTG	T	445	PASS	EFTUD1	CCDS42071.1	r.?	-	-	Del	intronic	D	82495627	82495634	5	32	542.594	-	-	1	1	1	EFTUD1|CCDS42071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFTUD1|CCDS42071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	3	7	3	7	15	25	15	25	3	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746051298	15	96116088	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	96116088	96116098	1	48	642.081	-	-	9	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	7	5	8	6	32	23	32	23	8	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746051942	15	97956271	GT	G	449	PASS	-	-	-	-	-	Del	-	D	97956271	97956275	1	24	434.075	-	-	3	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	5	5	8	25	28	25	28	5	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746054908	16	3916137	TAGAAA	T	300	PASS	CREBBP	CCDS10509.1	r.?	-	-	Del	intronic	D	3916137	3916150	5	12	271.158	-	-	2	1	1	CREBBP|CCDS10509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CREBBP|CCDS10509.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	2	3	3	4	24	29	24	29	3	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746062623	16	23011936	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	23011936	23011944	1	24	427.23	-	-	7	1	1	-	-	./.	0	0	0	0	6	11	6	12	0	0	./.	5	3	6	5	27	33	27	33	6	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746064081	16	26430809	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	26430809	26430816	1	48	637.533	-	-	6	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	7	7	8	40	21	40	21	7	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746081008	16	86712455	G	GGTATATACCCA	272	PASS	-	-	-	-	-	Ins	-	I	86712455	86712459	11	9	376.055	-	-	0	1	1	-	-	./.	0	0	0	0	8	5	9	5	0	0	./.	8	0	3	0	10	10	15	10	8	0	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746093053	17	34018634	AAT	A	300	PASS	AP2B1	CCDS32621.1	r.?	-	-	Del	intronic	D	34018634	34018637	2	10	271.422	-	-	1	1	1	AP2B1|CCDS32621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP2B1|CCDS32621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	4	1	7	4	19	15	19	15	7	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746112948	18	11671894	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	11671894	11671896	1	12	268.293	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	2	3	5	5	19	27	19	28	5	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746115689	18	21382176	G	GA	360	PASS	LAMA3	CCDS42419.1	r.?	-	-	Ins	intronic	I	21382176	21382183	1	16	321.952	-	-	6	1	1	LAMA3|CCDS42419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LAMA3|CCDS42419.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	3	3	4	7	34	25	34	25	4	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746116564	18	24202148	G	GA	360	PASS	KCTD1	CCDS11888.1	r.?	-	-	Ins	intronic	I	24202148	24202158	1	12	321.35	-	-	9	1	1	KCTD1|CCDS11888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KCTD1|CCDS11888.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	5	1	8	2	26	19	26	19	8	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746117991	18	29211604	TAA	T	420	PASS	B4GALT6	CCDS11900.1	r.?	-	-	Del	intronic	D	29211604	29211607	2	14	379.825	-	-	2	1	1	B4GALT6|CCDS11900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	B4GALT6|CCDS11900.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	6	1	7	2	23	12	23	12	7	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746121916	18	42574107	T	TA	480	PASS	SETBP1	CCDS11923.2	r.?	-	-	Ins	intronic	I	42574107	42574111	1	24	429.269	-	-	3	1	1	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SETBP1|CCDS11923.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	5	4	8	20	21	20	22	4	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746128955	18	62549271	ATCTATCTATCTATCTG	A	296	PASS	-	-	-	-	-	Del	-	D	62549271	62549291	16	14	379.825	-	-	1	1	-	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	6	1	3	0	26	19	26	20	6	1	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746135540	19	3109046	TC	T	900	PASS	GNA11	CCDS12103.1	r.?	-	-	Del	intronic	D	3109046	3109049	1	60	813.713	-	-	2	1	1	GNA11|CCDS12103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNA11|CCDS12103.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	4	11	7	13	24	34	24	34	7	13	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746140528	19	13126250	ACTCT	A	420	PASS	NFIX	CCDS45996.1	r.?	-	-	Del	intronic	D	13126250	13126259	4	18	376.723	-	-	4	1	1	NFIX|CCDS45996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NFIX|CCDS45996.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	5	4	6	21	20	21	20	4	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746144857	19	22238743	GCTA	G	443	PASS	ZNF257	CCDS46030.1	r.?	-	-	Del	intronic	D	22238743	22238749	3	30	488.228	-	-	1	1	1	ZNF257|CCDS46030.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF257|CCDS46030.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	6	5	6	0	0	./.	4	5	8	7	28	19	28	19	8	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746173565	2	43549813	CTTTTTTTTTTTTTTT	C	290	PASS	THADA	CCDS46268.1	r.?	-	-	Del	intronic	D	43549813	43549843	15	36	516.993	-	-	1	1	-	THADA|CCDS46268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	THADA|CCDS46268.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	5	5	5	5	9	16	10	16	6	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746180569	2	68973842	T	TCC	360	PASS	ARHGAP25	CCDS33214.1	r.?	-	-	Ins	intronic	I	68973842	68973847	2	12	314.169	-	-	4	1	1	ARHGAP25|CCDS33214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP25|CCDS33214.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	11	3	11	0	0	./.	1	5	0	1	20	23	20	23	1	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746188814	2	100636698	T	TG	660	PASS	AFF3	CCDS42723.1	r.?	-	-	Ins	intronic	I	100636698	100636701	1	40	581.696	-	-	2	1	1	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AFF3|CCDS42723.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	12	0	0	./.	7	4	9	5	21	13	21	13	9	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746189592	2	103221240	CTG	C	720	PASS	-	-	-	-	-	Del	-	D	103221240	103221245	2	33	646.4	-	-	2	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	10	4	11	16	20	16	20	4	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746198263	2	133101616	C	CTT	598	PASS	-	-	-	-	-	Ins	-	I	133101616	133101617	2	30	579.288	-	-	0	1	1	-	-	./.	0	0	0	0	14	11	15	11	0	0	./.	2	9	0	0	29	50	29	50	2	9	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746211269	2	178681917	T	TTA	480	PASS	PDE11A	CCDS42786.1	r.?	-	-	Ins	intronic	I	178681917	178681920	2	24	421.301	-	-	1	1	1	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE11A|CCDS42786.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	5	3	7	3	30	16	30	16	7	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746216039	2	196786342	TAA	T	300	PASS	DNAH7	CCDS42794.1	r.?	-	-	Del	intronic	D	196786342	196786347	2	10	269.333	-	-	4	1	1	DNAH7|CCDS42794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAH7|CCDS42794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	1	4	3	4	29	13	29	13	3	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746230696	20	483042	G	GA	540	PASS	CSNK2A1P	CCDS13003.1	r.?	-	-	Ins	intronic	I	483042	483052	1	30	481.447	-	-	9	1	1	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	4	5	8	7	24	33	24	33	8	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746239114	20	25881765	GT	G	300	PASS	-	-	-	-	-	Del	-	D	25881765	25881773	1	7	326.183	-	-	7	1	1	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	6	0	6	2	43	50	44	50	7	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746281455	3	979384	AT	A	540	PASS	-	-	-	-	-	Del	-	D	979384	979393	1	28	484.884	-	-	8	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	6	3	8	3	22	14	22	14	8	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746281649	3	1494389	GA	G	360	PASS	-	-	-	-	-	Del	-	D	1494389	1494396	1	16	323.256	-	-	6	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	3	3	4	6	25	22	25	22	4	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746284459	3	9026777	A	AAT	300	PASS	SRGAP3	CCDS2572.1	r.3827_3828insau	c.?	p.?	Ins	3'UTR variant	I	9026777	9026793	2	12	262.757	-	-	7	1	-	SRGAP3|CCDS2572.1|r.3827_3828insau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	SRGAP3|CCDS2572.1|r.3827_3828insau|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	19	11	19	11	0	0	./.	3	2	5	6	30	24	30	24	5	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746290845	3	29006394	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	29006394	29006403	1	21	425.589	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	12	10	0	0	./.	6	2	6	5	21	30	21	30	6	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746296599	3	47462542	T	TG	658	PASS	SCAP	CCDS2755.2	r.?	-	-	Ins	intronic	I	47462542	47462550	1	49	634.471	-	-	7	1	1	SCAP|CCDS2755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCAP|CCDS2755.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	6	6	7	7	28	36	28	37	7	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746302275	3	63689869	TAA	T	360	PASS	-	-	-	-	-	Del	-	D	63689869	63689872	2	12	322.052	-	-	2	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	1	5	3	6	39	28	39	28	3	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746311855	3	94544593	TGAAA	T	540	PASS	-	-	-	-	-	Del	-	D	94544593	94544599	4	28	484.884	-	-	1	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	6	3	6	7	24	31	24	31	6	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746314517	3	103379573	GT	G	420	PASS	-	-	-	-	-	Del	-	D	103379573	103379576	1	18	376.53	-	-	2	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	2	5	2	8	25	25	25	25	2	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746320740	3	121508618	CAAG	C	838	PASS	IQCB1	CCDS33837.1	r.?	-	-	Del	intronic	D	121508618	121508625	3	70	806.334	-	-	2	1	1	IQCB1|CCDS33837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IQCB1|CCDS33837.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	9	6	10	10	34	34	34	34	10	10	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746323938	3	130101174	A	AG	540	PASS	COL29A1	ENST00000312481	r.?	-	-	Ins	intronic	I	130101174	130101177	1	28	479.465	-	-	2	1	1	COL29A1|ENST00000312481|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL29A1|ENST00000312481|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	6	4	9	33	32	33	33	4	9	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746326383	3	137648191	TA	T	540	PASS	-	-	-	-	-	Del	-	D	137648191	137648200	1	28	484.884	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	3	7	5	22	31	22	31	7	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746327232	3	140286630	T	TA	540	PASS	CLSTN2	CCDS3112.1	r.4593_4594insa	c.?	p.?	Ins	3'UTR variant	I	140286630	140286640	1	30	479.465	-	-	9	1	1	CLSTN2|CCDS3112.1|r.4593_4594insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CLSTN2|CCDS3112.1|r.4593_4594insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	12	13	12	13	0	0	./.	4	5	6	6	37	40	37	40	6	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746335234	3	164031171	CA	C	300	PASS	-	-	-	-	-	Del	-	D	164031171	164031175	1	12	268.176	-	-	3	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	2	4	2	39	36	39	36	4	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746335856	3	165786726	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	165786726	165786738	2	12	253.726	-	-	5	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	3	2	4	5	16	29	16	29	4	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746338011	3	171833856	TAA	T	660	PASS	FNDC3B	CCDS3217.1	r.?	-	-	Del	intronic	D	171833856	171833859	2	40	592.636	-	-	2	1	1	FNDC3B|CCDS3217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FNDC3B|CCDS3217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	7	4	10	6	38	33	38	33	10	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746338219	3	172330409	AT	A	546	PASS	-	-	-	-	-	Del	-	D	172330409	172330419	1	32	538.76	-	-	9	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	3	7	6	12	24	29	24	29	6	12	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746347642	3	196501701	C	CA	900	PASS	PAK2	CCDS3321.1	r.?	-	-	Ins	intronic	I	196501701	196501709	1	72	796.701	-	-	7	1	1	PAK2|CCDS3321.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PAK2|CCDS3321.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	8	7	11	11	40	46	40	46	11	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746366061	4	62092927	C	CT	329	PASS	LPHN3	ENST00000512091	r.?	-	-	Ins	intronic	I	62092927	62092937	1	15	319.037	-	-	9	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	15	9	15	0	0	./.	4	2	4	4	16	23	16	23	4	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746366069	4	62114883	CAGTGA	C	536	PASS	LPHN3	ENST00000512091	r.?	-	-	Del	intronic	D	62114883	62114893	5	36	590.721	-	-	1	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	3	8	4	8	16	20	16	20	4	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746376090	4	97911185	AT	A	629	PASS	-	-	-	-	-	Del	-	D	97911185	97911189	1	36	589.517	-	-	3	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	8	4	10	14	19	14	19	4	10	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746387344	4	139966042	C	CCTTATT	261	PASS	CCRN4L	CCDS3743.1	r.903_904inscuuauu	c.710_711insCTTATT	p.F239_F240insLF	Ins	inframe	I	139966042	139966049	6	30	451.463	-	-	1	1	1	CCRN4L|CCDS3743.1|r.903_904inscuuauu|c.710_711insCTTATT|p.F239_F240insLF|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	CCRN4L|CCDS3743.1|r.903_904inscuuauu|c.710_711insCTTATT|p.F239_F240insLF|protein_coding:CDS:exon:insertion:inframe_variant:inframe_codon_gain|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001650:SO:0001651	./.	0	0	0	0	10	13	10	13	0	0	./.	4	5	4	4	21	19	21	20	4	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746392219	4	159206787	GATAAC	G	505	PASS	-	-	-	-	-	Del	-	D	159206787	159206794	5	36	593.129	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	8	3	10	4	20	13	20	13	10	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746417688	5	39254882	CAAG	C	420	PASS	FYB	ENST00000512982	r.?	-	-	Del	intronic	D	39254882	39254887	3	20	377.827	-	-	1	1	1	FYB|ENST00000512982|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FYB|ENST00000512982|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	3	4	4	5	29	20	29	20	4	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746419724	5	49586121	T	TA	569	PASS	-	-	-	-	-	Ins	-	I	49586121	49586130	1	32	533.732	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	3	7	3	9	27	29	27	29	3	9	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746425259	5	66378274	T	TAA	360	PASS	MAST4	CCDS47225.1	r.?	-	-	Ins	intronic	I	66378274	66378279	2	15	316.627	-	-	4	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	2	5	3	34	20	34	20	5	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746426801	5	72272444	A	AT	532	PASS	FCHO2	CCDS47230.1	r.?	-	-	Ins	intronic	I	72272444	72272453	1	28	476.747	-	-	8	1	1	FCHO2|CCDS47230.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FCHO2|CCDS47230.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	6	3	7	14	34	14	34	3	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746431835	5	86486024	TATG	T	627	PASS	-	-	-	-	-	Del	-	D	86486024	86486032	3	49	645.897	-	-	2	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	6	6	7	6	29	24	29	24	7	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746435043	5	98942061	CTTTA	C	300	PASS	-	-	-	-	-	Del	-	D	98942061	98942081	4	12	269.877	-	-	4	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	2	7	5	28	31	28	31	7	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746436122	5	102757954	T	TAGC	569	PASS	-	-	-	-	-	Ins	-	I	102757954	102757959	3	32	521.089	-	-	1	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	7	5	8	21	29	21	29	5	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746449827	5	148769780	A	AC	600	PASS	-	-	-	-	-	Ins	-	I	148769780	148769790	1	35	521.691	-	-	9	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	4	6	8	7	16	34	16	34	8	9	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746469481	6	30791240	C	CT	877	PASS	-	-	-	-	-	Ins	-	I	30791240	30791250	1	72	797.499	-	-	9	1	-	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	8	7	15	13	32	32	32	33	15	13	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746473871	6	42454456	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	42454456	42454463	1	14	374.133	-	-	6	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	6	1	10	1	21	4	21	4	10	1	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746477587	6	55488030	AC	A	480	PASS	-	-	-	-	-	Del	-	D	55488030	55488032	1	25	432.397	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	5	4	18	13	18	13	5	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746485792	6	84245448	TA	T	480	PASS	-	-	-	-	-	Del	-	D	84245448	84245457	1	25	431.795	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	4	4	7	8	21	14	21	14	7	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746490087	6	101201191	C	CCA	329	PASS	ASCC3	CCDS5046.1	r.?	-	-	Ins	intronic	I	101201191	101201192	2	7	317.073	-	-	0	1	1	ASCC3|CCDS5046.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASCC3|CCDS5046.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	0	6	1	0	22	18	22	18	1	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746494328	6	117210163	TA	T	420	PASS	RFX6	CCDS5113.1	r.?	-	-	Del	intronic	D	117210163	117210168	1	18	378.347	-	-	4	1	1	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	2	5	3	6	15	14	15	14	3	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746496440	6	125018611	A	AT	420	PASS	NKAIN2	CCDS34526.1	r.?	-	-	Ins	intronic	I	125018611	125018618	1	20	373.531	-	-	6	1	1	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NKAIN2|CCDS34526.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	3	4	5	17	20	18	20	4	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746497457	6	129882908	T	TG	420	PASS	-	-	-	-	-	Ins	-	I	129882908	129882909	1	20	372.327	-	-	0	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	3	4	6	5	11	17	11	17	6	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746498596	6	134065703	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	134065703	134065706	1	16	320.083	-	-	2	1	1	-	-	./.	0	0	0	0	10	8	11	8	0	0	./.	3	3	4	4	15	9	15	9	4	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746506081	6	161717431	AAAGG	A	658	PASS	-	-	-	-	-	Del	-	D	161717431	161717437	4	40	648.595	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	9	4	10	16	23	16	23	4	10	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746516022	7	20741183	CTG	C	360	PASS	ABCB5	CCDS5371.1	r.?	-	-	Del	intronic	D	20741183	20741188	2	15	323.78	-	-	2	1	1	ABCB5|CCDS5371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCB5|CCDS5371.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	4	3	6	25	25	25	25	3	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746518317	7	27370707	T	TTG	745	PASS	-	-	-	-	-	Ins	-	I	27370707	27370709	2	16	756.469	-	-	0	1	-	-	-	./.	0	0	0	0	6	6	6	6	0	0	./.	15	0	1	0	34	25	34	25	16	0	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746524405	7	44967875	A	AG	389	PASS	-	-	-	-	-	Ins	-	I	44967875	44967876	1	20	366.304	-	-	0	1	1	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	3	4	3	6	29	32	29	32	3	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746531485	7	65789454	GA	G	360	PASS	TPST1	CCDS5533.1	r.?	-	-	Del	intronic	D	65789454	65789463	1	15	323.78	-	-	8	1	1	TPST1|CCDS5533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TPST1|CCDS5533.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	2	4	4	7	25	25	25	25	4	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746532076	7	66763280	G	GGT	386	PASS	STAG3L4	CCDS43594.1	r.?	-	-	Ins	upstream	I	66763280	66763281	2	14	365.702	-	-	0	1	1	STAG3L4|CCDS43594.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	STAG3L4|CCDS43594.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	3	10	3	0	0	./.	6	1	1	0	27	16	28	16	7	1	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746544440	7	101665712	AC	A	660	PASS	CUX1	CCDS5721.1	r.?	-	-	Del	intronic	D	101665712	101665714	1	42	593.597	-	-	1	1	1	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUX1|CCDS5721.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	5	6	7	8	29	27	29	27	7	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746547620	7	110536046	T	TA	449	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Ins	intronic	I	110536046	110536055	1	21	425.686	-	-	8	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	6	2	7	3	28	18	29	18	7	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746548680	7	114461645	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	114461645	114461653	1	36	693.094	-	-	7	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	11	3	11	25	28	25	28	3	11	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746550738	7	122110879	T	TA	329	PASS	CADPS2	CCDS47691.1	r.?	-	-	Ins	intronic	I	122110879	122110881	1	7	320.168	-	-	1	1	1	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CADPS2|CCDS47691.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	0	8	2	30	17	30	17	8	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746553771	7	130103591	G	GTA	480	PASS	-	-	-	-	-	Ins	-	I	130103591	130103596	2	24	420.268	-	-	2	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	5	4	7	22	33	22	33	4	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746569578	8	15052553	C	CA	420	PASS	SGCZ	CCDS5992.2	r.?	-	-	Ins	intronic	I	15052553	15052561	1	18	374.157	-	-	7	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	5	10	6	0	0	./.	5	2	5	2	28	24	28	25	5	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746571072	8	19086754	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	19086754	19086763	1	25	427.608	-	-	8	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	4	4	4	7	30	35	31	36	4	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746575531	8	31590712	AT	A	480	PASS	NRG1	CCDS47836.1	r.?	-	-	Del	intronic	D	31590712	31590722	1	25	431.22	-	-	9	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	4	6	4	25	19	25	19	6	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746578972	8	43183403	GC	G	622	PASS	POTEA	CCDS43735.1	r.?	-	-	Del	intronic	D	43183403	43183406	1	48	648.034	-	-	2	1	1	POTEA|CCDS43735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POTEA|CCDS43735.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	7	5	11	6	27	20	27	20	11	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746583839	8	63454213	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	63454213	63454221	1	36	529.091	-	-	7	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	5	5	7	8	19	27	19	28	7	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746588028	8	78015933	CTAAT	C	776	PASS	-	-	-	-	-	Del	-	D	78015933	78015940	4	72	809.591	-	-	1	1	1	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	8	7	9	10	22	29	22	29	9	10	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746588734	8	80680543	CGCGCTGGCGGCGGCGGCGGCG	C	435	PASS	HEY1	CCDS43749.1	r.?	-	-	Del	upstream	D	80680543	80680572	21	72	759.62	-	-	1	1	-	HEY1|CCDS43749.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	HEY1|CCDS43749.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	4	7	4	0	0	./.	7	8	7	7	30	19	30	20	8	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746590618	8	87378847	CAG	C	540	PASS	-	-	-	-	-	Del	-	D	87378847	87378851	2	28	486.477	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	6	3	7	6	20	26	20	26	7	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746599390	8	116581736	A	AC	840	PASS	TRPS1	CCDS6318.2	r.?	-	-	Ins	intronic	I	116581736	116581738	1	64	748.313	-	-	1	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	7	7	8	8	27	24	28	24	8	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746604405	8	133483752	TTACTAAATGCTGATAA	T	290	PASS	KCNQ3	CCDS34943.1	r.?	-	-	Del	intronic	D	133483752	133483770	16	27	538.122	-	-	1	1	1	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ3|CCDS34943.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	8	2	8	3	29	16	29	16	8	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746606617	8	140554146	CAATAAAGCA	C	290	PASS	-	-	-	-	-	Del	-	D	140554146	140554159	9	32	540.53	-	-	1	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	3	7	3	7	26	35	26	36	3	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746609331	9	3527489	TG	T	480	PASS	RFX3	CCDS6449.1	r.?	-	-	Del	upstream	D	3527489	3527492	1	24	429.836	-	-	2	1	1	RFX3|CCDS6449.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	RFX3|CCDS6449.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	9	10	9	0	0	./.	5	3	5	3	24	20	24	20	5	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746613613	9	16394867	AC	A	287	PASS	-	-	-	-	-	Del	-	D	16394867	16394873	1	36	595.164	-	-	5	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	8	3	8	3	15	22	15	22	8	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746615846	9	23665969	AGGGAGG	A	261	PASS	-	-	-	-	-	Del	-	D	23665969	23665978	6	30	486.35	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	4	5	5	5	28	23	28	24	5	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746633538	9	97342869	AGTTCTGTT	A	348	PASS	FBP2	CCDS6711.1	r.?	-	-	Del	intronic	D	97342869	97342878	8	45	645.658	-	-	1	1	1	FBP2|CCDS6711.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBP2|CCDS6711.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	8	4	10	4	25	21	25	21	10	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746633741	9	97996954	GAC	G	360	PASS	FANCC	CCDS35071.1	r.?	-	-	Del	intronic	D	97996954	97996970	2	12	324.635	-	-	7	1	1	FANCC|CCDS35071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FANCC|CCDS35071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	1	5	1	5	22	23	22	23	1	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746642218	9	123708407	GAGA	G	329	PASS	-	-	-	-	-	Del	-	D	123708407	123708413	3	16	324.635	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	7	6	17	23	17	23	7	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746645212	9	132099353	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	132099353	132099358	1	6	265.713	-	-	4	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	5	0	7	1	18	14	18	14	7	1	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746645776	9	133308634	CG	C	809	PASS	HMCN2	ENST00000428715	r.?	-	-	Del	intronic	D	133308634	133308637	1	64	750.257	-	-	2	1	1	HMCN2|ENST00000428715|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMCN2|ENST00000428715|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	7	12	7	32	21	32	21	12	7	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746647683	9	138464572	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	138464572	138464582	1	12	266.917	-	-	9	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	3	4	38	34	38	34	3	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746648273	9	140306753	GATTAGAGAAGGGTCAAT	G	261	PASS	EXD3	CCDS48066.1	r.?	-	-	Del	intronic	D	140306753	140306773	17	30	486.952	-	-	1	1	1	EXD3|CCDS48066.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	EXD3|CCDS48066.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	4	5	0	0	13	30	13	31	4	5	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746649412	X	5126239	TAGAAAGTGAAACACTGAAATTTGAGAG	T	406	PASS	-	-	-	-	-	Del	-	D	5126239	5126267	27	63	755.236	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	6	8	4	3	21	15	23	20	6	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746651083	X	12016675	GC	G	300	PASS	-	-	-	-	-	Del	-	D	12016675	12016677	1	12	270.802	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	2	19	35	19	35	4	2	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746653615	X	23121958	TA	T	540	PASS	-	-	-	-	-	Del	-	D	23121958	23121968	1	30	487.444	-	-	9	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	4	5	7	6	23	21	23	21	7	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746655263	X	29654194	C	CA	360	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Ins	intronic	I	29654194	29654204	1	15	315.932	-	-	9	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	2	4	3	6	27	32	28	32	3	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746661987	X	58393300	TA	T	300	PASS	-	-	-	-	-	Del	-	D	58393300	58393304	1	12	267.19	-	-	3	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	2	3	5	3	27	28	27	28	5	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746664053	X	71816978	TA	T	420	PASS	PHKA1	CCDS48137.1	r.?	-	-	Del	intronic	D	71816978	71816981	1	20	379.123	-	-	2	1	1	PHKA1|CCDS48137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PHKA1|CCDS48137.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	5	15	5	0	0	./.	3	4	5	4	39	35	39	35	5	4	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746665760	X	79961963	A	AT	269	PASS	BRWD3	CCDS14447.1	r.?	-	-	Ins	intronic	I	79961963	79961973	1	10	267.792	-	-	9	1	1	BRWD3|CCDS14447.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BRWD3|CCDS14447.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	4	1	8	8	31	35	31	35	8	8	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746672213	X	108478731	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	108478731	108478736	2	20	379.123	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	4	6	6	23	27	23	27	6	6	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746678641	X	135590040	CCA	C	300	PASS	HTATSF1	CCDS14657.1	r.?	-	-	Del	intronic	D	135590040	135590057	2	12	269.598	-	-	8	1	1	HTATSF1|CCDS14657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTATSF1|CCDS14657.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	2	3	29	35	29	35	2	3	1	1	1	1	1	1	1	1
2731451	PD14444a	PD14444b	2746680131	X	141941226	C	CA	522	PASS	-	-	-	-	-	Ins	-	I	141941226	141941233	1	40	589.142	-	-	6	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	7	5	9	23	25	23	25	5	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742045996	1	35134893	CTG	C	300	PASS	MIR552	ENST00000385206	r.?	-	-	Del	downstream	D	35134893	35134913	2	12	267.591	-	-	9	1	1	MIR552|ENST00000385206|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	MIR552|ENST00000385206|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	./.	0	0	0	0	11	12	13	12	0	0	./.	3	2	3	2	23	14	24	15	3	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742050593	1	47345095	AATACT	A	302	PASS	-	-	-	-	-	Del	-	D	47345095	47345104	5	28	483.832	-	-	1	1	1	-	-	./.	0	0	0	0	14	21	14	21	0	0	./.	6	3	6	3	21	20	21	20	6	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742067555	1	100988613	T	TC	660	PASS	CDC14A	CCDS769.1	r.?	-	-	Ins	downstream	I	100988613	100988616	1	40	584.727	-	-	2	1	1	CDC14A|CCDS769.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CDC14A|CCDS769.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	20	15	20	15	0	0	./.	7	4	8	5	28	23	28	23	8	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742074393	1	142634685	CA	C	371	PASS	-	-	-	-	-	Del	-	D	142634685	142634688	1	18	375.109	-	-	2	1	1	-	-	./.	0	0	0	0	52	72	52	72	0	0	./.	5	2	6	3	90	80	90	80	6	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742100666	1	218678403	G	GA	418	PASS	-	-	-	-	-	Ins	-	I	218678403	218678413	1	25	425.256	-	-	9	1	1	-	-	./.	0	0	0	0	9	13	10	13	0	0	./.	4	4	5	5	22	21	22	21	5	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742116283	10	10756036	AC	A	840	PASS	-	-	-	-	-	Del	-	D	10756036	10756038	1	63	751.962	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	8	6	10	9	36	18	36	18	10	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742119664	10	19071447	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	19071447	19071456	1	12	266.021	-	-	8	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	2	4	4	21	25	21	25	4	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742120873	10	23263058	AC	A	329	PASS	ARMC3	CCDS7142.1	r.?	-	-	Del	intronic	D	23263058	23263060	1	12	323.56	-	-	1	1	1	ARMC3|CCDS7142.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARMC3|CCDS7142.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	5	1	5	1	25	11	25	11	5	1	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742122152	10	26781014	CT	C	505	PASS	APBB1IP	CCDS31167.1	r.?	-	-	Del	intronic	D	26781014	26781016	1	40	592.59	-	-	1	1	1	APBB1IP|CCDS31167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APBB1IP|CCDS31167.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	7	6	8	30	21	30	21	6	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742127720	10	42430939	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	42430939	42430947	1	32	532.041	-	-	7	1	1	-	-	./.	0	0	0	0	11	17	11	17	0	0	./.	3	7	4	8	26	28	26	28	4	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742129189	10	45126849	AGTCCACATC	A	406	PASS	-	-	-	-	-	Del	-	D	45126849	45126861	9	63	753.166	-	-	1	1	1	-	-	./.	0	0	0	0	16	15	16	15	0	0	./.	6	8	6	8	21	28	21	28	6	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742135017	10	64544914	CA	C	600	PASS	-	-	-	-	-	Del	-	D	64544914	64544918	1	27	539.266	-	-	3	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	8	2	10	2	31	18	31	18	10	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742148050	10	103406536	AT	A	420	PASS	FBXW4	CCDS31271.1	r.?	-	-	Del	intronic	D	103406536	103406541	1	20	377.486	-	-	4	1	1	FBXW4|CCDS31271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FBXW4|CCDS31271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	4	3	5	4	20	24	20	24	5	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742154323	10	122507855	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	122507855	122507865	1	12	265.419	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	6	2	25	26	25	27	6	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742170090	11	31773649	G	GA	480	PASS	ELP4	CCDS7875.2	r.?	-	-	Ins	intronic	I	31773649	31773658	1	21	427.428	-	-	8	1	1	ELP4|CCDS7875.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ELP4|CCDS7875.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	14	0	0	./.	2	6	5	8	27	24	27	24	5	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742175453	11	47352042	GCTGCCTTCATGGAATT	G	377	PASS	MADD	CCDS7930.1	r.?	-	-	Del	downstream	D	47352042	47352062	16	56	702.397	-	-	1	1	1	MADD|CCDS7930.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	MADD|CCDS7930.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	10	11	10	11	0	0	./.	7	6	7	6	29	27	29	27	7	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742178601	11	60593694	TC	T	360	PASS	-	-	-	-	-	Del	-	D	60593694	60593696	1	7	320.571	-	-	1	1	1	-	-	./.	0	0	0	0	23	15	23	15	0	0	./.	6	0	8	4	20	21	20	21	8	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742198734	11	120361945	C	CT	360	PASS	ARHGEF12	CCDS41727.1	r.?	-	-	Ins	downstream	I	120361945	120361955	1	15	320.571	-	-	9	1	1	ARHGEF12|CCDS41727.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ARHGEF12|CCDS41727.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	18	16	18	16	0	0	./.	4	2	4	7	23	22	23	22	4	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742206637	12	8655257	AAGAG	A	420	PASS	-	-	-	-	-	Del	-	D	8655257	8655270	4	20	378.218	-	-	6	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	3	4	4	5	25	23	25	23	4	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742215971	12	32729475	CATA	C	269	PASS	FGD4	CCDS8727.1	r.?	-	-	Del	intronic	D	32729475	32729482	3	10	270.155	-	-	2	1	1	FGD4|CCDS8727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FGD4|CCDS8727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	1	4	1	7	18	22	18	22	1	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742226103	12	66356838	AAAC	A	269	PASS	HMGA2	CCDS44936.1	r.?	-	-	Del	intronic	D	66356838	66356846	3	12	268.349	-	-	2	1	1	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HMGA2|CCDS44936.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	14	6	14	0	0	./.	2	3	2	5	9	22	9	22	2	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742230506	12	80292396	CACTCACAA	C	377	PASS	PPP1R12A	CCDS44947.1	r.?	-	-	Del	intronic	D	80292396	80292408	8	54	702.404	-	-	1	1	1	PPP1R12A|CCDS44947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP1R12A|CCDS44947.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	8	5	0	0	26	20	26	20	8	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742231916	12	85157538	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	85157538	85157548	1	18	366.778	-	-	9	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	5	4	8	21	29	23	29	4	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742233015	12	89329989	ACTC	A	569	PASS	-	-	-	-	-	Del	-	D	89329989	89329994	3	36	539.107	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	5	6	7	25	26	25	26	6	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742236249	12	98570251	CA	C	360	PASS	-	-	-	-	-	Del	-	D	98570251	98570256	1	15	324.186	-	-	4	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	4	2	4	4	20	21	20	21	4	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742243428	12	119007839	A	AT	749	PASS	-	-	-	-	-	Ins	-	I	119007839	119007848	1	56	693.975	-	-	8	1	1	-	-	./.	0	0	0	0	14	24	14	24	0	0	./.	7	6	8	11	28	32	29	32	8	11	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742244800	12	122090399	C	CA	480	PASS	MORN3	CCDS31917.1	r.?	-	-	Ins	intronic	I	122090399	122090403	1	21	427.432	-	-	3	1	1	MORN3|CCDS31917.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	MORN3|CCDS31917.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	6	2	10	5	28	20	28	20	10	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742249894	13	19767269	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	19767269	19767276	1	40	582.482	-	-	6	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	7	4	9	7	20	28	20	29	9	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742251904	13	23779967	TA	T	420	PASS	SGCG	CCDS9299.1	r.?	-	-	Del	intronic	D	23779967	23779969	1	20	379.099	-	-	1	1	1	SGCG|CCDS9299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCG|CCDS9299.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	20	13	20	0	0	./.	4	3	6	4	19	21	19	21	6	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742257774	13	39643015	GTTAA	G	538	PASS	-	-	-	-	-	Del	-	D	39643015	39643024	4	36	541.57	-	-	2	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	5	5	6	23	22	23	22	5	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742263784	13	56678992	TTAA	T	687	PASS	-	-	-	-	-	Del	-	D	56678992	56678997	3	56	695.612	-	-	1	1	1	-	-	./.	0	0	0	0	10	20	10	20	0	0	./.	6	7	6	8	16	24	16	24	6	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742267554	13	68224442	ATTTC	A	534	PASS	-	-	-	-	-	Del	-	D	68224442	68224450	4	45	646.874	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	8	4	12	5	35	21	35	21	12	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742267712	13	68750954	G	GA	720	PASS	-	-	-	-	-	Ins	-	I	68750954	68750964	1	48	641.455	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	7	5	6	6	32	20	32	22	7	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742295986	14	54242001	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	54242001	54242006	1	30	482.505	-	-	4	1	1	-	-	./.	0	0	0	0	6	15	8	15	0	0	./.	5	4	6	5	30	23	30	23	6	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742302814	14	74744509	A	AGAT	629	PASS	-	-	-	-	-	Ins	-	I	74744509	74744513	3	36	569.861	-	-	1	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	3	8	3	8	23	20	23	21	3	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742303053	14	75403068	GT	G	720	PASS	-	-	-	-	-	Del	-	D	75403068	75403070	1	45	648.157	-	-	1	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	8	4	10	5	41	26	41	26	10	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742306174	14	84814517	AG	A	480	PASS	-	-	-	-	-	Del	-	D	84814517	84814520	1	24	433.108	-	-	2	1	1	-	-	./.	0	0	0	0	17	21	17	21	0	0	./.	5	3	6	3	25	30	25	30	6	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742306872	14	86857899	T	TA	720	PASS	-	-	-	-	-	Ins	-	I	86857899	86857906	1	45	642.136	-	-	6	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	8	5	12	24	33	25	33	5	12	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742316544	15	25330303	T	TCAAACA	319	PASS	ENSG00000206193	ENST00000383025	r.?	-	-	Ins	intronic	I	25330303	25330312	6	22	556.244	-	-	1	1	1	ENSG00000206193|ENST00000383025|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000206193|ENST00000383025|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	1	10	1	9	27	26	27	27	1	10	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742324912	15	49741154	C	CT	660	PASS	FGF7	CCDS10131.1	r.?	-	-	Ins	intronic	I	49741154	49741163	1	36	586.949	-	-	8	1	1	FGF7|CCDS10131.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF7|CCDS10131.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	8	3	12	4	36	19	36	19	12	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742324992	15	49942275	CTA	C	329	PASS	DTWD1	CCDS10132.1	r.?	-	-	Del	downstream	D	49942275	49942290	2	16	323.602	-	-	7	1	1	DTWD1|CCDS10132.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DTWD1|CCDS10132.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	5	17	5	0	0	./.	3	3	3	4	29	20	29	20	3	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742338895	15	88974640	TG	T	840	PASS	-	-	-	-	-	Del	-	D	88974640	88974644	1	48	759.286	-	-	3	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	11	3	14	4	26	11	26	11	14	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742344537	16	1754403	TG	T	540	PASS	MAPK8IP3	CCDS10442.2	r.?	-	-	Del	upstream	D	1754403	1754405	1	28	484.661	-	-	1	1	1	MAPK8IP3|CCDS10442.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	MAPK8IP3|CCDS10442.2|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	9	18	9	0	0	./.	6	3	6	3	30	25	30	25	6	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742350929	16	15110789	T	TATA	873	PASS	PDXDC1	CCDS32393.1	r.?	-	-	Ins	intronic	I	15110789	15110791	3	110	994.61	-	-	0	1	1	PDXDC1|CCDS32393.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDXDC1|CCDS32393.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	19	24	19	0	0	./.	10	9	11	10	41	41	41	41	11	10	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742359944	16	34414726	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	34414726	34414736	1	12	267.918	-	-	9	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	3	2	3	2	29	22	29	24	3	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742369967	16	79410418	AT	A	394	PASS	-	-	-	-	-	Del	-	D	79410418	79410427	1	20	379.3	-	-	8	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	4	3	8	4	15	12	15	12	8	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742372853	16	88254163	GC	G	259	PASS	-	-	-	-	-	Del	-	D	88254163	88254168	1	8	379.3	-	-	4	1	1	-	-	./.	0	0	0	0	6	18	6	18	0	0	./.	7	0	7	0	15	14	15	14	7	0	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742372943	16	88600402	A	AC	300	PASS	ZFPM1	CCDS32502.1	r.2358_2359insc	c.2036_2037insC	p.S681fs*>328	Ins	frameshift	I	88600402	88600407	1	10	267.918	-	-	4	1	1	ZFPM1|CCDS32502.1|r.2358_2359insc|c.2036_2037insC|p.S681fs*>328|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	ZFPM1|CCDS32502.1|r.2358_2359insc|c.2036_2037insC|p.S681fs*>328|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	11	14	11	14	0	0	./.	4	1	4	1	12	12	12	12	4	1	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742383726	17	30625639	GA	G	780	PASS	RHBDL3	CCDS32613.1	r.?	-	-	Del	intronic	D	30625639	30625644	1	56	702.901	-	-	4	1	1	RHBDL3|CCDS32613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RHBDL3|CCDS32613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	18	14	18	0	0	./.	7	6	9	6	21	20	21	20	9	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742385917	17	37659226	TATTTGACAGGGATCAGCATCACTTGAACCCAGGAGG	TAACCTCA	348	PASS	CDK12	CCDS45666.1	r.?	-	-	Complex	intronic	DI	37659227	37659262	36	49	0	-	-	0	1	1	CDK12|CCDS45666.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	CDK12|CCDS45666.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	18	11	18	11	0	0	./.	6	6	0	0	16	7	18	10	6	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742393891	17	60134768	C	CA	720	PASS	MED13	CCDS42366.1	r.?	-	-	Ins	intronic	I	60134768	60134776	1	48	640.866	-	-	7	1	1	MED13|CCDS42366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED13|CCDS42366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	5	7	5	8	24	44	24	44	5	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742402996	18	708532	T	TA	300	PASS	ENOSF1	CCDS45821.1	r.?	-	-	Ins	intronic	I	708532	708542	1	10	254.916	-	-	9	1	1	ENOSF1|CCDS45821.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENOSF1|CCDS45821.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	10	15	10	0	0	./.	4	1	4	1	30	22	31	22	4	1	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742419822	18	53597891	TGTTA	T	269	PASS	-	-	-	-	-	Del	-	D	53597891	53597898	4	12	271.172	-	-	1	1	1	-	-	./.	0	0	0	0	8	21	8	21	0	0	./.	3	2	5	3	22	26	22	26	5	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742421799	18	59205049	A	AG	420	PASS	CDH20	CCDS11977.1	r.?	-	-	Ins	intronic	I	59205049	59205056	1	20	375.426	-	-	6	1	1	CDH20|CCDS11977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH20|CCDS11977.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	4	3	6	5	25	31	25	31	6	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742433399	19	10772748	CT	C	420	PASS	ILF3	CCDS45965.1	r.?	-	-	Del	intronic	D	10772748	10772751	1	14	379.66	-	-	2	1	1	ILF3|CCDS45965.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ILF3|CCDS45965.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	6	1	8	2	33	18	33	18	8	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742439318	19	22570520	CAGA	C	301	PASS	ZNF98	CCDS46031.1	r.?	-	-	Del	downstream	D	22570520	22570526	3	15	325.423	-	-	1	1	1	ZNF98|CCDS46031.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF98|CCDS46031.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	2	4	3	5	24	22	24	22	3	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742458639	2	13590155	A	AT	276	PASS	-	-	-	-	-	Ins	-	I	13590155	13590165	1	12	265.946	-	-	9	1	1	-	-	./.	0	0	0	0	22	14	23	14	0	0	./.	3	2	4	2	37	25	37	25	4	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742471600	2	52039120	AAG	A	329	PASS	-	-	-	-	-	Del	-	D	52039120	52039137	2	12	321.543	-	-	8	1	1	-	-	./.	0	0	0	0	21	10	21	10	0	0	./.	1	5	1	5	19	37	19	37	1	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742479328	2	77187635	G	GA	600	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Ins	intronic	I	77187635	77187642	1	36	530.086	-	-	6	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	16	14	0	0	./.	5	5	5	7	25	19	26	19	5	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742481277	2	84247080	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	84247080	84247090	1	15	319.135	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	15	13	0	0	./.	4	2	7	4	30	14	30	14	7	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742490896	2	117270581	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	117270581	117270591	1	8	370.518	-	-	9	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	0	7	0	8	3	26	3	26	0	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742501384	2	149631657	TA	T	720	PASS	KIF5C	ENST00000435030	r.?	-	-	Del	upstream	D	149631657	149631659	1	33	645.495	-	-	1	1	1	KIF5C|ENST00000435030|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	KIF5C|ENST00000435030|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	15	13	15	13	0	0	./.	2	10	3	11	17	26	17	26	3	11	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742507371	2	170084077	TA	T	420	PASS	LRP2	CCDS2232.1	r.?	-	-	Del	intronic	D	170084077	170084080	1	20	376.539	-	-	2	1	1	LRP2|CCDS2232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP2|CCDS2232.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	18	7	18	0	0	./.	4	3	4	5	25	21	25	21	4	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742512719	2	185706518	AT	A	360	PASS	ZNF804A	CCDS2291.1	r.?	-	-	Del	intronic	D	185706518	185706527	1	15	322.145	-	-	8	1	1	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804A|CCDS2291.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	3	15	3	0	0	./.	4	2	5	4	21	19	21	19	5	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742525378	2	223477226	T	TG	780	PASS	FARSB	CCDS2454.1	r.?	-	-	Ins	intronic	I	223477226	223477228	1	50	685.439	-	-	1	1	1	FARSB|CCDS2454.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FARSB|CCDS2454.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	12	0	0	./.	9	4	11	5	25	24	25	24	11	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742527651	2	229494786	TC	T	840	PASS	-	-	-	-	-	Del	-	D	229494786	229494790	1	60	752.475	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	5	9	5	9	23	23	23	23	5	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742531021	2	239310476	CTCTTCTT	C	290	PASS	TRAF3IP1	CCDS33415.1	r.?	-	-	Del	downstream	D	239310476	239310486	7	36	537.31	-	-	1	1	1	TRAF3IP1|CCDS33415.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TRAF3IP1|CCDS33415.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	11	8	11	0	0	./.	5	5	6	5	21	26	21	26	6	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742552793	20	57855050	TC	T	420	PASS	-	-	-	-	-	Del	-	D	57855050	57855053	1	14	379.169	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	6	3	7	17	24	17	24	3	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742555664	21	10015283	A	ATT	282	PASS	-	-	-	-	-	Ins	-	I	10015283	10015290	2	50	690.76	-	-	6	1	1	-	-	./.	0	0	0	0	68	22	68	23	0	0	./.	9	4	12	5	92	39	92	39	12	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742558977	21	16558770	ATCTCAATCACATATGAGTATTAGTAGATTTCATTATTTAAATGAT	A	435	PASS	-	-	-	-	-	Del	-	D	16558770	16558817	45	66	815.093	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	5	10	0	5	21	27	26	32	5	10	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742577261	22	30217279	GCCCTCTCTGAACT	G	423	PASS	ASCC2	CCDS13869.1	r.?	-	-	Del	intronic	D	30217279	30217294	13	70	818.971	-	-	1	1	1	ASCC2|CCDS13869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ASCC2|CCDS13869.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	9	6	9	5	18	17	18	18	9	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742588676	3	12713381	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	12713381	12713382	1	10	261.043	-	-	0	1	1	-	-	./.	0	0	0	0	11	10	11	11	0	0	./.	4	1	6	1	18	20	19	21	6	1	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742593789	3	30169104	CAT	C	434	PASS	-	-	-	-	-	Del	-	D	30169104	30169109	2	21	431.155	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	2	8	4	22	28	22	28	8	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742600624	3	50321999	AAAAATAC	A	319	PASS	IFRD2	CCDS46831.1	r.?	-	-	Del	downstream	D	50321999	50322011	7	42	588.021	-	-	1	1	1	IFRD2|CCDS46831.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	C3orf45|CCDS2814.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	5	6	5	5	26	23	26	24	5	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742606359	3	67712225	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	67712225	67712232	1	25	424.532	-	-	6	1	1	-	-	./.	0	0	0	0	10	13	10	14	0	0	./.	4	4	5	8	24	26	24	26	5	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742606513	3	68330467	G	GT	480	PASS	FAM19A1	ENST00000478136	r.?	-	-	Ins	intronic	I	68330467	68330476	1	24	426.338	-	-	8	1	1	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM19A1|ENST00000478136|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	5	3	7	5	20	22	20	22	7	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742611696	3	81504672	AG	A	480	PASS	-	-	-	-	-	Del	-	D	81504672	81504674	1	24	429.951	-	-	1	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	3	5	4	5	31	19	31	19	4	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742612494	3	84295305	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	84295305	84295313	1	12	265.859	-	-	7	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	3	2	4	4	16	21	16	21	4	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742613012	3	86170875	C	CGA	329	PASS	-	-	-	-	-	Ins	-	I	86170875	86170893	2	12	305.906	-	-	8	1	-	-	-	./.	0	0	0	0	20	13	20	13	0	0	./.	5	1	5	1	26	23	26	23	5	1	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742616130	3	100357967	C	CT	420	PASS	GPR128	CCDS2938.1	r.?	-	-	Ins	intronic	I	100357967	100357974	1	20	373.046	-	-	6	1	1	GPR128|CCDS2938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPR128|CCDS2938.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	4	4	4	17	18	17	18	4	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742627304	3	136107493	GCCACCGCA	G	319	PASS	STAG1	CCDS3090.1	r.?	-	-	Del	intronic	D	136107493	136107504	8	36	592.236	-	-	1	1	1	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	3	8	3	9	17	24	17	24	3	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742633167	3	154621417	TG	T	360	PASS	-	-	-	-	-	Del	-	D	154621417	154621426	1	16	322.764	-	-	8	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	4	7	24	22	24	22	4	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742647632	4	334284	TGATTAAACCTGA	T	377	PASS	ZNF141	ENST00000240499	r.?	-	-	Del	intronic	D	334284	334299	12	56	700.257	-	-	1	1	1	ZNF141|ENST00000240499|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF141|ENST00000240499|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	7	6	7	6	24	22	24	22	7	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742653638	4	17933620	CCA	C	658	PASS	LCORL	CCDS3425.1	r.?	-	-	Del	intronic	D	17933620	17933629	2	48	645.187	-	-	4	1	1	LCORL|CCDS3425.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LCORL|CCDS3425.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	7	5	7	6	21	19	21	19	7	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742654295	4	20501319	GC	G	431	PASS	SLIT2	ENST00000504154	r.?	-	-	Del	intronic	D	20501319	20501322	1	24	430.927	-	-	2	1	1	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	12	20	12	0	0	./.	3	5	3	7	17	22	17	22	3	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742660377	4	38406255	T	TTTCTCTCTTTTTCTTTCTTTCC	360	PASS	-	-	-	-	-	Ins	-	I	38406255	38406260	22	16	243.724	-	-	0	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	3	3	0	0	18	29	18	30	3	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742678408	4	92629389	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	92629389	92629407	2	10	269.33	-	-	8	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	4	1	4	3	29	23	29	23	4	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742684062	4	112714311	CTTACAAGAGCAGAG	C	319	PASS	-	-	-	-	-	Del	-	D	112714311	112714326	14	36	592.525	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	8	3	7	25	21	25	22	3	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742688297	4	126521919	CAAAT	C	360	PASS	-	-	-	-	-	Del	-	D	126521919	126521927	4	16	323.195	-	-	1	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	3	3	4	5	20	25	20	25	4	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742688885	4	128546387	CT	C	480	PASS	INTU	ENST00000504491	r.?	-	-	Del	intronic	D	128546387	128546392	1	24	430.927	-	-	4	1	1	INTU|ENST00000504491|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INTU|ENST00000504491|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	5	3	5	5	17	21	17	21	5	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742698320	4	158950748	TAAAG	T	509	PASS	-	-	-	-	-	Del	-	D	158950748	158950755	4	30	484.793	-	-	1	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	4	5	6	5	24	25	24	25	6	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742699521	4	162157006	TAC	T	660	PASS	-	-	-	-	-	Del	-	D	162157006	162157010	2	42	591.923	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	5	6	5	9	25	20	25	20	5	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742719925	5	24356578	AT	A	480	PASS	-	-	-	-	-	Del	-	D	24356578	24356582	1	21	431.586	-	-	3	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	2	6	5	7	24	25	24	25	5	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742720867	5	27166649	AT	A	600	PASS	-	-	-	-	-	Del	-	D	27166649	27166655	1	32	539.483	-	-	5	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	7	3	7	6	29	30	29	30	7	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742722863	5	32332858	GTTGT	G	629	PASS	-	-	-	-	-	Del	-	D	32332858	32332877	4	42	591.625	-	-	4	1	-	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	6	5	8	5	30	16	30	16	8	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742723214	5	33300273	ACTC	A	507	PASS	-	-	-	-	-	Del	-	D	33300273	33300279	3	35	539.483	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	6	4	8	5	24	31	24	31	8	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742724466	5	37079005	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	37079005	37079012	1	25	426.77	-	-	6	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	4	4	6	4	32	34	32	36	6	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742726268	5	43080392	GC	G	749	PASS	ZNF131	ENST00000507393	r.?	-	-	Del	intronic	D	43080392	43080394	1	54	698.92	-	-	1	1	1	ZNF131|ENST00000507393|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZNF131|ENST00000507393|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	5	8	7	12	27	25	27	25	7	12	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742734431	5	74016965	C	CTT	540	PASS	HEXB	CCDS4022.1	r.1753_1754insuu	c.1636_1637insTT	p.Y547fs*30	Ins	frameshift	I	74016965	74016969	2	30	474.698	-	-	3	1	1	HEXB|CCDS4022.1|r.1753_1754insuu|c.1636_1637insTT|p.Y547fs*30|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	HEXB|CCDS4022.1|r.1753_1754insuu|c.1636_1637insTT|p.Y547fs*30|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	14	9	14	9	0	0	./.	5	4	5	7	20	21	20	21	5	7	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742737941	5	84476367	TATATA	T	329	PASS	-	-	-	-	-	Del	-	D	84476367	84476378	5	15	323.69	-	-	2	1	-	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	4	2	6	4	15	23	15	23	6	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742738990	5	88156309	A	AT	480	PASS	MEF2C	CCDS47244.1	r.?	-	-	Ins	intronic	I	88156309	88156319	1	25	418.341	-	-	9	1	1	MEF2C|CCDS47244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MEF2C|CCDS47244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	4	7	5	29	26	30	26	7	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742740685	5	95636965	GAA	G	509	PASS	-	-	-	-	-	Del	-	D	95636965	95636970	2	24	485.535	-	-	4	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	7	2	9	8	31	20	31	20	9	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742743276	5	104984879	GA	G	660	PASS	-	-	-	-	-	Del	-	D	104984879	104984883	1	36	592.829	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	8	3	9	4	24	13	24	13	9	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742756974	5	150276708	AAG	A	749	PASS	ZNF300	ENST00000394226	r.?	-	-	Del	intronic	D	150276708	150276712	2	56	701.328	-	-	1	1	1	ZNF300|ENST00000394226|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF300|ENST00000394226|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	21	19	21	0	0	./.	6	7	6	8	30	22	30	22	6	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742760577	5	161773337	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	161773337	161773344	1	21	426.168	-	-	6	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	6	2	7	2	29	27	29	28	7	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742777159	6	25308432	G	GGT	360	PASS	LRRC16A	ENST00000329474	r.?	-	-	Ins	intronic	I	25308432	25308433	2	12	316.39	-	-	0	1	1	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC16A|ENST00000329474|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	1	5	2	23	19	24	20	5	2	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742784536	6	44894962	AT	A	480	PASS	SUPT3H	CCDS34466.1	r.?	-	-	Del	intronic	D	44894962	44894964	1	25	431.486	-	-	1	1	1	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SUPT3H|CCDS34466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	4	4	4	8	22	24	22	24	4	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742789996	6	62763643	TCAAA	T	720	PASS	KHDRBS2	CCDS4963.1	r.?	-	-	Del	intronic	D	62763643	62763651	4	45	647.229	-	-	1	1	1	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KHDRBS2|CCDS4963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	17	17	17	0	0	./.	4	8	6	10	16	29	16	29	6	10	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742804817	6	108793373	TA	T	600	PASS	LACE1	CCDS5067.1	r.?	-	-	Del	intronic	D	108793373	108793376	1	32	538.756	-	-	2	1	1	LACE1|CCDS5067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LACE1|CCDS5067.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	3	7	6	9	22	28	22	28	6	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742813419	6	137319264	AAT	A	300	PASS	IL20RA	CCDS5181.1	r.?	-	-	Del	downstream	D	137319264	137319267	2	10	269.679	-	-	1	1	1	IL20RA|CCDS5181.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IL20RA|CCDS5181.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	6	14	6	14	0	0	./.	1	4	2	5	14	20	14	20	2	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742838812	7	40938086	G	GGC	420	PASS	-	-	-	-	-	Ins	-	I	40938086	40938088	2	8	367.981	-	-	0	1	1	-	-	./.	0	0	0	0	8	7	8	7	0	0	./.	7	0	1	0	20	12	21	12	7	0	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742847170	7	65599615	TAGC	T	327	PASS	CRCP	CCDS5532.1	r.?	-	-	Del	intronic	D	65599615	65599621	3	20	374.001	-	-	1	1	1	CRCP|CCDS5532.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CRCP|CCDS5532.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	3	5	6	19	22	19	22	5	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742882972	8	8776586	TTG	T	418	PASS	-	-	-	-	-	Del	-	D	8776586	8776592	2	25	432.23	-	-	2	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	5	4	18	25	18	25	5	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742902915	8	73633390	ACAT	A	509	PASS	KCNB2	CCDS6209.1	r.?	-	-	Del	intronic	D	73633390	73633398	3	30	486.259	-	-	2	1	1	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB2|CCDS6209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	4	5	4	8	13	28	13	28	4	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742913378	8	107995019	TA	T	660	PASS	-	-	-	-	-	Del	-	D	107995019	107995024	1	42	594.316	-	-	4	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	6	5	12	6	31	23	31	23	12	6	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742923865	8	141900888	A	AT	540	PASS	PTK2	CCDS6381.1	r.?	-	-	Ins	intronic	I	141900888	141900895	1	30	480.84	-	-	6	1	1	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTK2|CCDS6381.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	4	5	5	5	23	26	23	26	5	5	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742947478	9	87754329	ATG	A	449	PASS	-	-	-	-	-	Del	-	D	87754329	87754332	2	24	432.079	-	-	1	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	3	6	4	24	20	24	20	6	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742949800	9	94974260	C	CA	300	PASS	IARS	CCDS6694.1	r.?	-	-	Ins	intronic	I	94974260	94974270	1	10	266.813	-	-	9	1	1	IARS|CCDS6694.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IARS|CCDS6694.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	20	11	20	0	0	./.	4	1	6	1	24	22	24	23	6	1	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742957690	9	119272797	G	GT	392	PASS	ASTN2	CCDS48009.1	r.?	-	-	Ins	intronic	I	119272797	119272804	1	36	588.314	-	-	6	1	1	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ASTN2|CCDS48009.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	19	16	19	0	0	./.	3	8	4	8	16	25	17	26	4	9	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742963240	9	134543891	C	CA	360	PASS	RAPGEF1	CCDS48048.1	r.?	-	-	Ins	intronic	I	134543891	134543892	1	16	319.694	-	-	0	1	1	RAPGEF1|CCDS48048.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAPGEF1|CCDS48048.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	3	3	4	3	22	14	22	14	4	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742966847	X	7427841	GT	G	375	PASS	-	-	-	-	-	Del	-	D	7427841	7427843	1	24	485.946	-	-	1	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	7	2	7	3	13	16	13	16	7	3	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742981035	X	70136361	GTTGT	G	269	PASS	-	-	-	-	-	Del	-	D	70136361	70136385	4	12	270.639	-	-	5	1	-	-	-	./.	0	0	0	0	19	9	19	9	0	0	./.	2	3	3	4	22	17	22	17	3	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742989127	X	102052732	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	102052732	102052742	1	66	781.813	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	10	5	10	8	24	20	24	20	10	8	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742991783	X	114416504	C	CT	300	PASS	LRCH2	CCDS48155.1	r.?	-	-	Ins	intronic	I	114416504	114416513	1	12	267.629	-	-	8	1	1	LRCH2|CCDS48155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRCH2|CCDS48155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	4	23	29	24	30	4	4	1	1	1	1	1	1	1	1
2726297	PD18111a	PD18111b	2742998046	X	139647271	TC	T	660	PASS	-	-	-	-	-	Del	-	D	139647271	139647274	1	42	595.406	-	-	2	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	5	6	9	9	23	30	23	30	9	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737861681	1	64408106	A	AT	360	PASS	ROR1	CCDS626.1	r.?	-	-	Ins	intronic	I	64408106	64408116	1	16	318.231	-	-	9	1	1	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROR1|CCDS626.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	20	19	21	0	0	./.	3	3	5	4	35	31	35	32	5	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737879999	1	119286354	G	GCC	720	PASS	-	-	-	-	-	Ins	-	I	119286354	119286356	2	48	629.839	-	-	1	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	5	7	7	7	21	29	21	29	7	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737886053	1	151816045	A	AC	300	PASS	THEM5	CCDS1005.1	r.?	-	-	Ins	downstream	I	151816045	151816046	1	12	263.286	-	-	0	1	1	THEM5|CCDS1005.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	C2CD4D|CCDS44224.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	23	13	23	0	0	./.	3	2	4	4	31	31	32	31	4	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737920751	10	695566	CA	C	636	PASS	DIP2C	CCDS7054.1	r.?	-	-	Del	intronic	D	695566	695570	1	40	592.924	-	-	3	1	1	DIP2C|CCDS7054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIP2C|CCDS7054.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	19	10	19	0	0	./.	7	4	8	10	25	22	25	22	8	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737933823	10	32588014	T	TG	780	PASS	EPC1	CCDS7172.1	r.?	-	-	Ins	intronic	I	32588014	32588016	1	54	692.299	-	-	1	1	1	EPC1|CCDS7172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPC1|CCDS7172.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	13	25	13	0	0	./.	8	5	11	6	27	18	27	18	11	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737940454	10	52615880	G	GACTA	778	PASS	A1CF	CCDS7243.1	r.?	-	-	Ins	intronic	I	52615880	52615885	4	63	720.915	-	-	1	1	1	A1CF|CCDS7243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	A1CF|CCDS7243.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	6	8	7	10	28	28	29	28	7	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737962796	10	114853348	TC	T	360	PASS	TCF7L2	CCDS7576.1	r.?	-	-	Del	intronic	D	114853348	114853350	1	15	323.413	-	-	1	1	1	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TCF7L2|CCDS7576.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	2	4	3	6	18	20	18	20	3	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737988041	11	48545255	AT	A	396	PASS	-	-	-	-	-	Del	-	D	48545255	48545265	1	20	378.017	-	-	9	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	3	4	3	5	27	31	27	31	3	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2737989698	11	57288961	TA	T	360	PASS	-	-	-	-	-	Del	-	D	57288961	57288963	1	15	311.371	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	2	4	2	5	28	29	28	29	2	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738014964	11	127887816	CATT	C	420	PASS	-	-	-	-	-	Del	-	D	127887816	127887822	3	20	378.017	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	4	3	10	7	32	26	32	26	10	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738022047	12	11624529	TG	T	420	PASS	-	-	-	-	-	Del	-	D	11624529	11624536	1	20	378.119	-	-	6	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	4	3	5	4	26	29	26	29	5	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738024348	12	17755877	CG	C	269	PASS	-	-	-	-	-	Del	-	D	17755877	17755879	1	12	269.483	-	-	1	1	1	-	-	./.	0	0	0	0	16	23	16	23	0	0	./.	3	2	6	3	23	26	23	26	6	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738026159	12	21967456	CA	C	1200	PASS	ABCC9	CCDS8693.1	r.?	-	-	Del	intronic	D	21967456	21967458	1	112	1079.14	-	-	1	1	1	ABCC9|CCDS8693.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCC9|CCDS8693.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	7	13	9	13	21	30	21	30	9	13	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738041693	12	67982193	TAC	T	600	PASS	-	-	-	-	-	Del	-	D	67982193	67982197	2	36	539.568	-	-	1	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	5	5	8	8	22	25	22	25	8	8	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738052256	12	99965627	TAGGAGCTGGTCTAAC	T	261	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99965627	99965645	15	30	486.153	-	-	1	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	5	4	5	4	20	21	20	21	5	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738072021	13	33678601	ATTT	A	329	PASS	STARD13	CCDS9348.1	r.4585_4587delAAA	c.?	p.?	Del	3'UTR variant	D	33678601	33678606	3	7	324.834	-	-	4	1	1	STARD13|CCDS9348.1|r.4585_4587delAAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	STARD13|CCDS9348.1|r.4585_4587delAAA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	13	26	13	26	0	0	./.	0	6	2	6	20	30	20	30	2	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738091305	13	90034628	ATAT	A	509	PASS	-	-	-	-	-	Del	-	D	90034628	90034635	3	24	486.047	-	-	2	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	7	2	9	2	20	13	20	13	9	2	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738100550	14	19805191	C	CA	290	PASS	-	-	-	-	-	Ins	-	I	19805191	19805198	1	32	535.488	-	-	6	1	1	-	-	./.	0	0	0	0	33	26	33	26	0	0	./.	7	3	10	5	59	48	59	48	10	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738100559	14	19818359	T	TG	265	PASS	-	-	-	-	-	Ins	-	I	19818359	19818360	1	10	265.336	-	-	0	1	-	-	-	./.	0	0	0	0	29	24	29	24	0	0	./.	4	1	0	0	54	40	57	40	4	1	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738110468	14	41756480	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	41756480	41756488	1	72	802.63	-	-	7	1	1	-	-	./.	0	0	0	0	21	13	22	13	0	0	./.	7	8	8	9	62	73	62	74	8	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738110562	14	41967283	ACT	A	300	PASS	-	-	-	-	-	Del	-	D	41967283	41967287	2	12	270.755	-	-	1	1	-	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	2	3	3	52	57	52	57	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738114750	14	50814060	TAG	T	360	PASS	CDKL1	CCDS9699.1	r.?	-	-	Del	intronic	D	50814060	50814080	2	15	323.099	-	-	9	1	1	CDKL1|CCDS9699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDKL1|CCDS9699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	2	4	4	5	63	51	63	51	4	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738120376	14	62761593	AG	A	840	PASS	-	-	-	-	-	Del	-	D	62761593	62761596	1	48	758.113	-	-	2	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	11	3	13	3	44	24	44	24	13	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738132764	15	20121011	CA	C	535	PASS	-	-	-	-	-	Del	-	D	20121011	20121015	1	140	1186.7	-	-	3	1	1	-	-	./.	0	0	0	0	42	68	42	68	0	0	./.	13	9	21	12	235	216	236	219	21	12	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738135480	15	26468165	GC	G	1020	PASS	-	-	-	-	-	Del	-	D	26468165	26468168	1	90	921.649	-	-	2	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	9	8	12	11	26	34	26	34	12	11	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738169120	16	10051813	GT	G	360	PASS	GRIN2A	CCDS10539.1	r.?	-	-	Del	intronic	D	10051813	10051818	1	12	323.864	-	-	4	1	1	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIN2A|CCDS10539.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	5	1	6	2	33	41	33	41	6	2	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738170713	16	12198553	TG	T	1080	PASS	SNX29	CCDS45416.1	r.?	-	-	Del	intronic	D	12198553	12198555	1	99	972.796	-	-	1	1	1	SNX29|CCDS45416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNX29|CCDS45416.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	8	10	16	18	49	42	49	42	16	18	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738171384	16	13280076	TTG	T	269	PASS	SHISA9	CCDS45417.1	r.?	-	-	Del	intronic	D	13280076	13280096	2	10	268.582	-	-	9	1	-	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SHISA9|CCDS45417.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	30	23	30	0	0	./.	1	4	2	7	62	80	62	80	2	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738176612	16	22659126	TATA	T	749	PASS	ENSG00000224154	ENST00000430965	r.?	-	-	Del	intronic	D	22659126	22659134	3	56	703.01	-	-	2	1	1	ENSG00000224154|ENST00000430965|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000224154|ENST00000430965|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	57	32	57	0	0	./.	7	6	9	8	109	121	109	121	9	8	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738176998	16	23390489	G	GCCAGCCATCCTCCACTCATTCATCCTCCATTCTCCCAC	660	PASS	SCNN1B	CCDS10609.1	r.?	-	-	Ins	intronic	I	23390489	23390505	38	48	478.01	-	-	0	1	-	SCNN1B|CCDS10609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCNN1B|CCDS10609.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	20	26	20	0	0	./.	2	15	0	0	75	90	77	103	2	15	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738182744	16	32465364	AC	A	516	PASS	-	-	-	-	-	Del	-	D	32465364	32465368	1	19	972.194	-	-	3	1	1	-	-	./.	0	0	0	0	30	37	30	37	0	0	./.	18	0	19	0	84	74	84	74	19	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738185869	16	46676762	A	AG	269	PASS	-	-	-	-	-	Ins	-	I	46676762	46676763	1	6	267.378	-	-	0	1	-	-	-	./.	0	0	0	0	21	15	22	15	0	0	./.	5	0	6	2	31	29	31	29	6	2	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738207019	17	18312616	GTTT	G	296	PASS	ENSG00000220161	ENST00000407600	r.?	-	-	Del	upstream	D	18312616	18312621	3	8	379.173	-	-	4	1	1	ENSG00000220161|ENST00000407600|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000220161|ENST00000407600|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	20	17	20	17	0	0	./.	7	0	9	0	41	33	41	33	9	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738207748	17	20537807	TGAGAAATTTA	T	335	PASS	-	-	-	-	-	Del	-	D	20537807	20537819	10	54	704.179	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	8	5	11	6	22	17	22	17	11	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738236248	18	9731271	CT	C	360	PASS	RAB31	CCDS45826.1	r.?	-	-	Del	intronic	D	9731271	9731274	1	12	325.261	-	-	2	1	1	RAB31|CCDS45826.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAB31|CCDS45826.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	1	5	3	8	15	24	15	24	3	8	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738243152	18	31849731	CTA	C	600	PASS	-	-	-	-	-	Del	-	D	31849731	31849734	2	36	541.5	-	-	1	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	5	5	8	8	30	20	30	20	8	8	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738269779	19	20836937	T	TA	444	PASS	ZNF626	CCDS42535.1	r.?	-	-	Ins	intronic	I	20836937	20836945	1	21	427.136	-	-	7	1	1	ZNF626|CCDS42535.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF626|CCDS42535.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	18	26	18	0	0	./.	6	2	6	5	30	20	31	20	6	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738285949	19	58751639	T	TA	360	PASS	ZNF544	CCDS12973.1	r.?	-	-	Ins	intronic	I	58751639	58751640	1	15	321.105	-	-	0	1	-	ZNF544|CCDS12973.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF544|CCDS12973.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	4	2	4	3	28	28	28	28	4	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738296970	2	32593265	T	TC	900	PASS	BIRC6	CCDS33175.2	r.?	-	-	Ins	intronic	I	32593265	32593267	1	52	786	-	-	1	1	1	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BIRC6|CCDS33175.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	12	3	15	5	30	20	31	20	15	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738305750	2	57273037	GT	G	720	PASS	-	-	-	-	-	Del	-	D	57273037	57273042	1	45	642.768	-	-	4	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	4	8	8	10	16	27	16	27	8	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738313967	2	82854628	GATGA	G	687	PASS	-	-	-	-	-	Del	-	D	82854628	82854635	4	54	698.941	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	5	8	6	10	16	17	16	17	6	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738314327	2	83837340	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	83837340	83837350	1	10	265.813	-	-	9	1	1	-	-	./.	0	0	0	0	20	18	21	18	0	0	./.	1	4	1	4	35	29	35	29	1	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738321157	2	106620083	TA	T	420	PASS	-	-	-	-	-	Del	-	D	106620083	106620085	1	18	376.353	-	-	1	1	1	-	-	./.	0	0	0	0	16	25	16	25	0	0	./.	2	5	9	13	16	35	16	35	9	13	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738322214	2	109834303	GC	G	540	PASS	SH3RF3	ENST00000309415	r.?	-	-	Del	intronic	D	109834303	109834309	1	28	483.28	-	-	5	1	1	SH3RF3|ENST00000309415|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3RF3|ENST00000309415|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	6	20	6	0	0	./.	6	3	7	3	21	18	21	18	7	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738347663	2	186682418	C	CA	300	PASS	FSIP2	ENST00000424728	r.?	-	-	Ins	intronic	I	186682418	186682425	1	12	265.813	-	-	6	1	1	FSIP2|ENST00000424728|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FSIP2|ENST00000424728|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	16	27	16	0	0	./.	3	2	3	3	29	20	29	20	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738374781	20	20576939	CTAAATCACATAGAT	C	406	PASS	RALGAPA2	CCDS46584.1	r.?	-	-	Del	intronic	D	20576939	20576956	14	60	759.371	-	-	1	1	1	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RALGAPA2|CCDS46584.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	9	5	8	5	23	15	24	15	9	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738390629	21	9667920	TG	T	484	PASS	-	-	-	-	-	Del	-	D	9667920	9667922	1	30	1572.49	-	-	1	1	1	-	-	./.	0	0	0	0	65	32	65	32	0	0	./.	29	0	34	0	128	83	128	83	34	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738394476	21	15919053	CG	C	600	PASS	SAMSN1	CCDS42906.1	r.?	-	-	Del	upstream	D	15919053	15919056	1	32	542.881	-	-	2	1	1	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SAMSN1|ENST00000285670|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	7	3	9	9	30	24	30	24	9	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738409166	22	19331409	A	AG	300	PASS	HIRA	CCDS13759.1	r.?	-	-	Ins	intronic	I	19331409	19331410	1	6	254.943	-	-	0	1	1	HIRA|CCDS13759.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HIRA|CCDS13759.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	0	5	2	6	36	26	36	26	2	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738411425	22	24242449	TAAAC	T	503	PASS	ENSG00000218537	ENST00000406213	r.?	-	-	Del	upstream	D	24242449	24242456	4	40	654.61	-	-	1	1	1	ENSG00000218537|ENST00000406213|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000218537|ENST00000406213|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	22	11	22	11	0	0	./.	9	3	10	7	41	44	41	44	10	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738420263	3	2470663	C	CT	600	PASS	CNTN4	CCDS43041.1	r.?	-	-	Ins	intronic	I	2470663	2470670	1	35	532.642	-	-	6	1	1	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CNTN4|CCDS43041.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	24	23	25	0	0	./.	6	4	9	7	22	30	22	30	9	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738421829	3	6286832	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	6286832	6286841	1	18	372.849	-	-	8	1	1	-	-	./.	0	0	0	0	19	13	19	14	0	0	./.	5	2	8	6	21	20	21	20	8	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738428219	3	25269907	TC	T	1020	PASS	RARB	ENST00000404969	r.?	-	-	Del	intronic	D	25269907	25269910	1	88	912.716	-	-	2	1	1	RARB|ENST00000404969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARB|ENST00000404969|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	19	19	19	0	0	./.	7	10	11	11	25	29	25	29	11	11	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738431076	3	34202923	GTAT	G	420	PASS	-	-	-	-	-	Del	-	D	34202923	34202934	3	20	377.064	-	-	3	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	3	5	4	26	19	26	19	5	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738466462	3	142141184	TA	T	420	PASS	XRN1	CCDS3123.1	r.?	-	-	Del	intronic	D	142141184	142141193	1	20	377.064	-	-	8	1	1	XRN1|CCDS3123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XRN1|CCDS3123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	21	25	21	0	0	./.	4	3	7	5	31	21	31	21	7	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738466578	3	142476910	AT	A	300	PASS	TRPC1	CCDS3126.1	r.?	-	-	Del	intronic	D	142476910	142476920	1	10	269.331	-	-	9	1	1	TRPC1|CCDS3126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPC1|CCDS3126.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	4	1	4	1	32	18	32	18	4	1	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738479650	3	182101177	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	182101177	182101187	1	24	418.889	-	-	9	1	-	-	-	./.	0	0	0	0	13	18	13	19	0	0	./.	3	5	4	11	23	30	23	30	4	11	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738485748	3	197765171	T	TG	660	PASS	LMLN	CCDS3332.1	r.?	-	-	Ins	intronic	I	197765171	197765176	1	42	583.498	-	-	4	1	1	LMLN|CCDS3332.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMLN|CCDS3332.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	22	17	23	0	0	./.	6	5	9	11	27	33	27	33	9	11	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738486833	4	2630767	GAC	G	794	PASS	FAM193A	CCDS33943.1	r.?	-	-	Del	intronic	D	2630767	2630771	2	63	750.13	-	-	1	1	1	FAM193A|CCDS33943.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	FAM193A|CCDS33943.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	6	8	10	10	25	26	25	26	10	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738496710	4	31752849	G	GAGTC	869	PASS	-	-	-	-	-	Ins	-	I	31752849	31752850	4	66	769.651	-	-	0	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	10	5	10	7	26	20	26	20	10	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738496967	4	32487899	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	32487899	32487909	1	10	262.571	-	-	9	1	1	-	-	./.	0	0	0	0	18	8	19	8	0	0	./.	4	1	4	1	28	31	29	32	4	1	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738508598	4	65515220	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	65515220	65515227	1	49	638.238	-	-	6	1	1	-	-	./.	0	0	0	0	22	11	22	11	0	0	./.	6	6	6	6	44	26	44	26	6	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738521117	4	103827696	CAAT	C	251	PASS	NHEDC1	CCDS34041.1	r.1331_1333delAUU	c.1189_1191delATT	p.I397delI	Del	inframe	D	103827696	103827701	3	18	915.259	-	-	1	1	1	NHEDC1|CCDS34041.1|r.1331_1333delAUU|c.1189_1191delATT|p.I397delI|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	NHEDC1|CCDS34041.1|r.1331_1333delAUU|c.1189_1191delATT|p.I397delI|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	24	7	24	7	0	0	./.	17	0	18	0	58	20	58	20	18	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738527053	4	122147394	AAG	A	300	PASS	TNIP3	ENST00000509841	r.?	-	-	Del	intronic	D	122147394	122147411	2	12	269.194	-	-	8	1	1	TNIP3|ENST00000509841|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNIP3|ENST00000509841|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	21	14	21	0	0	./.	2	3	2	3	20	31	20	31	2	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738535943	4	150645622	TTCTC	T	569	PASS	-	-	-	-	-	Del	-	D	150645622	150645636	4	20	538.388	-	-	6	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	9	1	12	2	38	18	38	18	12	2	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738546577	4	179983124	AG	A	809	PASS	-	-	-	-	-	Del	-	D	179983124	179983128	1	48	753.742	-	-	3	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	3	11	5	15	14	33	14	33	5	15	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738549685	4	187062345	G	GT	540	PASS	FAM149A	CCDS34117.1	r.?	-	-	Ins	upstream	I	187062345	187062353	1	28	476.12	-	-	7	1	1	FAM149A|CCDS34117.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	FAM149A|ENST00000356371|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	16	8	16	0	0	./.	3	6	5	9	23	28	23	28	5	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738557453	5	14717781	CAG	C	840	PASS	ANKH	CCDS3885.1	r.?	-	-	Del	intronic	D	14717781	14717786	2	64	754.336	-	-	2	1	1	ANKH|CCDS3885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKH|CCDS3885.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	7	7	7	8	19	29	19	29	7	8	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738567979	5	43383684	T	TA	360	PASS	CCL28	CCDS3944.1	r.?	-	-	Ins	intronic	I	43383684	43383694	1	15	319.331	-	-	9	1	1	CCL28|CCDS3944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CCL28|CCDS3944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	2	4	2	4	36	28	36	28	2	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738585108	5	100488856	A	AGAAT	747	PASS	-	-	-	-	-	Ins	-	I	100488856	100488862	4	48	721.223	-	-	1	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	11	3	13	4	35	19	36	19	13	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738587022	5	106942283	C	CAG	329	PASS	EFNA5	CCDS4097.1	r.?	-	-	Ins	intronic	I	106942283	106942288	2	12	304.881	-	-	2	1	-	EFNA5|CCDS4097.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EFNA5|CCDS4097.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	1	5	3	6	25	19	25	19	3	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738590266	5	117827106	TACAG	T	718	PASS	ENSG00000232769	ENST00000428465	r.?	-	-	Del	intronic	D	117827106	117827114	4	54	700.412	-	-	1	1	1	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000232769|ENST00000428465|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	5	8	8	10	23	25	23	25	8	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738590680	5	118958372	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	118958372	118958379	1	12	266.611	-	-	6	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	3	2	4	5	26	28	27	28	4	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738591557	5	121927618	ATTACACAGCCCTTCACTCT	A	493	PASS	-	-	-	-	-	Del	-	D	121927618	121927638	19	60	916.109	-	-	1	1	1	-	-	./.	0	0	0	0	2	12	2	12	0	0	./.	3	14	3	14	16	37	16	37	3	14	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738592680	5	125367655	TA	T	540	PASS	-	-	-	-	-	Del	-	D	125367655	125367662	1	30	482.307	-	-	6	1	1	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	4	5	6	5	28	25	28	25	6	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738593012	5	126112177	T	TA	780	PASS	LMNB1	CCDS4140.1	r.?	-	-	Ins	upstream	I	126112177	126112179	1	54	692.585	-	-	1	1	1	LMNB1|CCDS4140.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	LMNB1|CCDS4140.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	18	18	18	18	0	0	./.	8	5	12	7	33	18	33	18	12	7	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738595039	5	133492578	ACTTTTTATT	A	435	PASS	SKP1	CCDS4171.1	r.1513_1521delAAUAAAAAG	c.?	p.?	Del	3'UTR variant	D	133492578	133492588	9	70	808.863	-	-	1	1	1	SKP1|CCDS4171.1|r.1513_1521delAAUAAAAAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	SKP1|CCDS4171.1|r.1513_1521delAAUAAAAAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	20	23	20	23	0	0	./.	9	6	11	9	26	27	26	27	11	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738610478	5	178537463	T	TA	689	PASS	ADAMTS2	CCDS4444.1	r.?	-	-	Ins	downstream	I	178537463	178537472	1	45	639.865	-	-	8	1	1	ADAMTS2|CCDS4444.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	ADAMTS2|CCDS4444.1|r.?|-|-|protein_coding:insertion:500B_downstream_variant|SO:0000010:SO:0000667:SO:0001634	./.	0	0	0	0	24	14	25	14	0	0	./.	4	8	7	9	35	32	35	32	7	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738625286	6	34378184	TCAAA	T	689	PASS	-	-	-	-	-	Del	-	D	34378184	34378209	4	49	646.979	-	-	6	1	-	-	-	./.	0	0	0	0	14	22	14	22	0	0	./.	6	6	6	6	27	28	27	28	6	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738660420	6	141289217	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	141289217	141289224	1	16	319.877	-	-	6	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	3	3	4	5	21	24	21	24	4	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738677751	7	18312865	C	CT	538	PASS	HDAC9	ENST00000433709	r.?	-	-	Ins	intronic	I	18312865	18312873	1	35	528.143	-	-	7	1	1	HDAC9|ENST00000433709|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HDAC9|ENST00000433709|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	6	4	10	6	25	14	26	14	10	6	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738685512	7	39835678	CAT	C	444	PASS	-	-	-	-	-	Del	-	D	39835678	39835681	2	13	642.562	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	12	0	17	0	54	17	54	17	17	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738693548	7	62523473	A	AG	258	PASS	-	-	-	-	-	Ins	-	I	62523473	62523476	1	11	532.96	-	-	2	1	1	-	-	./.	0	0	0	0	20	22	21	22	0	0	./.	10	0	10	0	37	32	37	32	10	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738713516	7	111577497	T	TA	300	PASS	DOCK4	CCDS47688.1	r.?	-	-	Ins	intronic	I	111577497	111577507	1	6	265.878	-	-	9	1	1	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOCK4|CCDS47688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	0	5	0	5	37	46	37	47	0	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738722154	7	135923306	CA	C	480	PASS	-	-	-	-	-	Del	-	D	135923306	135923312	1	25	422.153	-	-	5	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	4	4	6	4	18	21	18	21	6	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738723622	7	139546685	GT	G	300	PASS	TBXAS1	CCDS5855.1	r.?	-	-	Del	intronic	D	139546685	139546687	1	6	265.878	-	-	1	1	1	TBXAS1|CCDS5855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBXAS1|CCDS5855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	23	15	23	0	0	./.	5	0	5	0	29	32	29	32	5	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738728211	7	152048289	AAGTAT	A	958	PASS	BAGE3	CCDS5931.1	r.?	-	-	Del	intronic	D	152048289	152048304	5	78	913.257	-	-	2	1	1	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	5	12	7	15	19	37	19	37	7	15	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738735630	8	14751226	TG	T	660	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14751226	14751228	1	40	592.75	-	-	1	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	11	27	11	0	0	./.	4	7	6	8	13	12	13	12	6	8	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738736448	8	17429291	TGGGA	T	418	PASS	SLC7A2	CCDS6002.2	r.?	-	-	Del	downstream	D	17429291	17429298	4	24	429.887	-	-	1	1	1	SLC7A2|CCDS6002.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PDGFRL|CCDS6003.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	18	7	18	7	0	0	./.	5	3	6	3	16	7	16	7	6	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738760717	8	83293946	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	83293946	83293965	2	15	322.716	-	-	9	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	4	2	4	3	63	41	63	41	4	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738764759	8	93611505	TA	T	300	PASS	-	-	-	-	-	Del	-	D	93611505	93611508	1	12	268.228	-	-	2	1	1	-	-	./.	0	0	0	0	14	26	14	26	0	0	./.	3	2	5	2	48	38	48	38	5	2	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738770871	8	105929457	AAC	A	269	PASS	-	-	-	-	-	Del	-	D	105929457	105929475	2	12	264.013	-	-	8	1	-	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	3	2	3	3	40	47	40	47	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738773161	8	111473945	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	111473945	111473964	2	12	269.432	-	-	9	1	-	-	-	./.	0	0	0	0	22	17	22	17	0	0	./.	2	3	3	3	46	56	46	56	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738773503	8	112381289	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	112381289	112381299	1	12	265.82	-	-	9	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	3	2	3	3	56	51	57	52	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738775514	8	117261545	TA	T	360	PASS	AF130342.1	ENST00000505156	r.?	-	-	Del	intronic	D	117261545	117261555	1	16	323.318	-	-	9	1	1	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AF130342.1|ENST00000505156|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	3	3	3	3	57	43	57	43	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738775866	8	117947335	C	CT	300	PASS	C8orf85	CCDS34935.1	r.?	-	-	Ins	upstream	I	117947335	117947345	1	10	264.615	-	-	9	1	1	C8orf85|CCDS34935.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C8orf85|CCDS34935.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	19	10	19	10	0	0	./.	1	4	1	4	44	50	44	51	1	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738777817	8	122320288	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	122320288	122320305	2	12	268.83	-	-	8	1	-	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	3	2	3	3	48	55	48	55	3	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738790916	9	7303625	GAC	G	269	PASS	-	-	-	-	-	Del	-	D	7303625	7303640	2	6	266.114	-	-	7	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	0	5	0	5	27	29	27	29	0	5	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738799146	9	32183371	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	32183371	32183388	2	12	270.329	-	-	8	1	1	-	-	./.	0	0	0	0	28	3	28	3	0	0	./.	3	2	2	2	43	22	43	22	3	2	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738805056	9	68703185	CA	C	250	PASS	-	-	-	-	-	Del	-	D	68703185	68703187	1	11	539.453	-	-	1	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	10	0	14	0	111	2	111	2	14	0	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738816026	9	100189082	T	TA	720	PASS	TDRD7	CCDS6725.1	r.?	-	-	Ins	intronic	I	100189082	100189085	1	49	638.553	-	-	2	1	1	TDRD7|CCDS6725.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TDRD7|CCDS6725.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	6	6	6	9	16	30	16	30	6	9	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738822319	9	117962377	GGT	G	300	PASS	DEC1	CCDS6812.1	r.?	-	-	Del	intronic	D	117962377	117962394	2	12	270.329	-	-	8	1	-	DEC1|CCDS6812.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DEC1|CCDS6812.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	2	3	2	3	23	18	23	18	2	3	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738825368	9	127110349	CT	C	720	PASS	NEK6	CCDS48015.1	r.?	-	-	Del	intronic	D	127110349	127110351	1	45	647.584	-	-	1	1	1	NEK6|CCDS48015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEK6|CCDS48015.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	8	4	9	4	28	15	28	15	9	4	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738832222	X	10853765	A	AT	780	PASS	MID1	CCDS14138.1	r.?	-	-	Ins	upstream	I	10853765	10853775	1	54	693.924	-	-	9	1	1	MID1|CCDS14138.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	MID1|CCDS14138.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	10	12	10	12	0	0	./.	8	5	8	10	20	21	21	21	8	10	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738853848	Y	13707103	AAATGG	A	311	PASS	-	-	-	-	-	Del	-	D	13707103	13707125	5	80	1039.9	-	-	4	1	1	-	-	./.	0	0	0	0	49	16	49	20	0	0	./.	4	15	8	27	62	67	62	67	8	27	1	1	1	1	1	1	1	1
2725399	PD20341a	PD20341b	2738853918	Y	14610880	G	GATAC	269	PASS	-	-	-	-	-	Ins	-	I	14610880	14610920	4	10	262.251	-	-	9	1	-	-	-	./.	0	0	0	0	9	2	9	2	0	0	./.	4	1	7	2	19	6	19	6	7	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736123656	1	61277881	AG	A	960	PASS	-	-	-	-	-	Del	-	D	61277881	61277884	1	65	859.677	-	-	2	1	1	-	-	./.	0	0	0	0	18	19	18	19	0	0	./.	12	4	13	4	33	30	33	30	13	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736123963	1	62041912	TTATTGCATC	T	446	PASS	-	-	-	-	-	Del	-	D	62041912	62041926	9	88	913.407	-	-	1	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	7	10	8	13	34	42	34	42	8	13	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736127050	1	69648404	AAAAACAAATACAATGTTT	A	290	PASS	-	-	-	-	-	Del	-	D	69648404	69648425	18	36	537.298	-	-	1	1	1	-	-	./.	0	0	0	0	22	15	22	15	0	0	./.	5	5	4	4	32	32	33	33	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736129093	1	75606314	C	CA	300	PASS	LHX8	CCDS30756.1	r.?	-	-	Ins	intronic	I	75606314	75606323	1	12	265.639	-	-	8	1	1	LHX8|CCDS30756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LHX8|CCDS30756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	17	23	18	0	0	./.	3	2	3	2	25	27	27	27	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736130871	1	80944779	ATTAG	A	360	PASS	-	-	-	-	-	Del	-	D	80944779	80944786	4	16	321.777	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	3	3	3	4	29	28	29	28	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736131317	1	82115995	AC	A	480	PASS	LPHN2	ENST00000370728	r.?	-	-	Del	intronic	D	82115995	82115998	1	21	429.839	-	-	2	1	1	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	2	6	4	7	30	19	30	19	4	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736134351	1	90743954	GTTCCAAGTATTTCAGGGCTGGGAAAACCAACCAAGT	G	348	PASS	-	-	-	-	-	Del	-	D	90743954	90743994	36	40	644.758	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	3	9	0	4	11	25	14	30	3	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736137101	1	98428513	ACTTT	A	358	PASS	-	-	-	-	-	Del	-	D	98428513	98428520	4	18	376.109	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	5	2	5	6	25	19	25	19	5	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736137941	1	100946214	GTTTTTGTTTA	G	609	PASS	CDC14A	CCDS769.1	r.?	-	-	Del	intronic	D	100946214	100946229	10	126	1127.72	-	-	1	1	1	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC14A|CCDS769.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	8	13	8	13	26	33	26	33	8	13	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736148037	1	146608967	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	146608967	146608977	1	12	265.037	-	-	9	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	3	2	2	2	39	23	39	24	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736149875	1	150907120	AAG	A	269	PASS	SETDB1	CCDS972.1	r.?	-	-	Del	intronic	D	150907120	150907124	2	12	268.649	-	-	1	1	1	SETDB1|CCDS972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SETDB1|CCDS972.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	14	23	14	0	0	./.	3	2	3	2	38	26	38	26	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736152590	1	157418143	GATGGTGTTTGTTTC	GTCAAT	435	PASS	-	-	-	-	-	Complex	-	DI	157418144	157418157	14	70	0	-	-	0	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	9	6	0	0	36	22	37	23	9	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736154562	1	163103887	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	163103887	163103894	1	8	371.894	-	-	6	1	1	-	-	./.	0	0	0	0	3	22	3	22	0	0	./.	0	7	0	8	23	42	24	42	0	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736159151	1	174983058	AT	A	360	PASS	MRPS14	CCDS1316.1	r.1150delA	c.?	p.?	Del	3'UTR variant	D	174983058	174983064	1	15	322.379	-	-	5	1	1	MRPS14|CCDS1316.1|r.1150delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	MRPS14|CCDS1316.1|r.1150delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	10	16	10	16	0	0	./.	4	2	5	3	38	29	38	29	5	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736159209	1	175129490	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	175129490	175129506	2	12	268.649	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	3	31	39	31	39	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736161342	1	180547221	AGCG	A	449	PASS	-	-	-	-	-	Del	-	D	180547221	180547227	3	24	429.839	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	5	3	6	6	35	28	35	28	6	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736165665	1	192275234	TGTCATTATAC	T	551	PASS	-	-	-	-	-	Del	-	D	192275234	192275250	10	110	1020.26	-	-	1	1	1	-	-	./.	0	0	0	0	12	15	12	15	0	0	./.	10	9	11	10	32	32	32	32	11	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736165784	1	192629325	TG	T	600	PASS	RGS13	CCDS1376.1	r.1441delG	c.?	p.?	Del	3'UTR variant	D	192629325	192629327	1	36	537.298	-	-	1	1	1	RGS13|CCDS1376.1|r.1441delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	RGS13|CCDS1376.1|r.1441delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	16	20	16	20	0	0	./.	5	5	10	7	37	38	37	38	10	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736166061	1	193330304	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	193330304	193330314	1	16	313.348	-	-	9	1	1	-	-	./.	0	0	0	0	17	17	17	17	0	0	./.	3	3	3	3	54	36	54	37	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736166846	1	195123178	AT	A	840	PASS	-	-	-	-	-	Del	-	D	195123178	195123186	1	55	751.615	-	-	7	1	-	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	10	4	13	13	38	32	38	32	13	13	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736170365	1	203285677	AAATAAATGGAG	A	377	PASS	-	-	-	-	-	Del	-	D	203285677	203285691	11	54	697.886	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	8	5	9	5	45	34	45	34	9	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736170370	1	203289020	CT	C	420	PASS	-	-	-	-	-	Del	-	D	203289020	203289022	1	18	370.69	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	5	3	6	31	42	31	42	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736172699	1	209011075	C	CA	809	PASS	-	-	-	-	-	Ins	-	I	209011075	209011085	1	39	737.166	-	-	9	1	1	-	-	./.	0	0	0	0	26	12	26	12	0	0	./.	2	12	4	12	29	54	29	54	4	12	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736173749	1	211589640	CCAGGCTT	C	261	PASS	-	-	-	-	-	Del	-	D	211589640	211589651	7	24	483.568	-	-	1	1	1	-	-	./.	0	0	0	0	29	14	29	14	0	0	./.	7	2	8	2	50	22	50	22	8	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736174507	1	213074455	C	CCT	420	PASS	FLVCR1	CCDS1510.1	r.?	-	-	Ins	downstream	I	213074455	213074456	2	18	367.078	-	-	0	1	1	FLVCR1|CCDS1510.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	FLVCR1|CCDS1510.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	19	17	19	17	0	0	./.	5	2	0	0	48	26	50	26	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736176555	1	218289678	GTTACCATTT	G	319	PASS	-	-	-	-	-	Del	-	D	218289678	218289689	9	36	589.824	-	-	1	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	3	8	4	9	29	23	29	23	4	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736176608	1	218397556	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	218397556	218397565	1	10	256.006	-	-	8	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	1	4	2	6	33	33	34	33	2	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736176981	1	219309060	TTCAA	T	507	PASS	-	-	-	-	-	Del	-	D	219309060	219309069	4	36	537.298	-	-	2	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	5	5	6	7	43	35	43	35	6	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736177975	1	221770522	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	221770522	221770532	1	15	318.767	-	-	9	1	1	-	-	./.	0	0	0	0	17	18	17	18	0	0	./.	2	4	3	5	48	54	48	55	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736180100	1	226458882	ACTTCT	A	685	PASS	LIN9	CCDS1553.1	r.?	-	-	Del	intronic	D	226458882	226458890	5	63	749.207	-	-	1	1	1	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LIN9|CCDS1553.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	8	18	8	0	0	./.	6	8	8	11	34	45	34	45	8	11	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736180410	1	227219689	ACTACAAGT	A	464	PASS	CDC42BPA	CCDS1558.1	r.?	-	-	Del	intronic	D	227219689	227219700	8	81	851.248	-	-	1	1	1	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC42BPA|CCDS1558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	8	8	9	7	30	33	30	34	9	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736180864	1	228254991	TGTGTGGCTGGGAAAA	T	551	PASS	-	-	-	-	-	Del	-	D	228254991	228255010	15	98	1019.66	-	-	1	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	13	6	13	6	49	28	49	28	13	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736183389	1	234797577	T	TA	840	PASS	-	-	-	-	-	Ins	-	I	234797577	234797578	1	48	742.585	-	-	0	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	11	3	11	4	38	24	38	24	11	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736186898	1	241581594	AG	A	360	PASS	-	-	-	-	-	Del	-	D	241581594	241581597	1	15	322.379	-	-	2	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	2	4	3	4	22	41	22	41	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736192443	10	5138905	TA	T	300	PASS	AKR1C3	CCDS7063.1	r.?	-	-	Del	intronic	D	5138905	5138910	1	12	269.754	-	-	4	1	1	AKR1C3|CCDS7063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AKR1C3|CCDS7063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	2	3	2	4	24	25	24	25	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736193972	10	8362971	CAA	C	480	PASS	-	-	-	-	-	Del	-	D	8362971	8362975	2	25	431.607	-	-	3	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	4	4	10	8	28	26	28	26	10	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736197594	10	16444743	GCCTCC	GAT	420	PASS	-	-	-	-	-	Complex	-	DI	16444744	16444748	5	18	0	-	-	0	1	1	-	-	./.	0	0	0	0	10	19	10	19	0	0	./.	2	5	0	0	16	22	16	22	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736210969	10	55509488	TGGATGAGGG	T	290	PASS	-	-	-	-	-	Del	-	D	55509488	55509502	9	27	538.906	-	-	1	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	2	8	2	8	16	30	16	30	2	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736211013	10	55608981	C	CT	269	PASS	PCDH15	CCDS44404.1	r.?	-	-	Ins	intronic	I	55608981	55608991	1	12	264.336	-	-	9	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	16	20	16	0	0	./.	2	3	2	3	32	20	32	20	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736211246	10	56158428	C	CA	480	PASS	PCDH15	CCDS44404.1	r.?	-	-	Ins	intronic	I	56158428	56158437	1	24	426.79	-	-	8	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	3	5	3	5	18	26	18	26	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736212348	10	59276418	TG	T	300	PASS	-	-	-	-	-	Del	-	D	59276418	59276422	1	12	269.754	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	4	3	18	29	18	29	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736218318	10	75569585	GGCTCAAGTGATCCTCCCACCTCA	G	406	PASS	CAMK2G	CCDS7338.1	r.?	-	-	Del	downstream	D	75569585	75569611	23	60	751.097	-	-	1	1	1	CAMK2G|CCDS7338.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NDST2|CCDS7335.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	5	9	5	9	21	35	21	35	5	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736220691	10	82862576	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	82862576	82862586	1	12	266.744	-	-	9	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	2	3	2	5	14	25	14	25	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736220711	10	82928059	TTG	T	360	PASS	-	-	-	-	-	Del	-	D	82928059	82928064	2	15	323.705	-	-	2	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	2	4	3	5	20	19	20	19	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736222191	10	87942946	GT	G	269	PASS	GRID1	CCDS31236.1	r.?	-	-	Del	intronic	D	87942946	87942951	1	6	269.754	-	-	4	1	1	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRID1|CCDS31236.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	0	5	0	5	7	24	7	24	0	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736222886	10	90138068	AG	A	360	PASS	RNLS	CCDS7388.1	r.?	-	-	Del	intronic	D	90138068	90138071	1	16	323.103	-	-	2	1	1	RNLS|CCDS7388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNLS|CCDS7388.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	8	17	8	0	0	./.	3	3	4	4	16	24	16	24	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736230618	10	113937439	GTCT	G	358	PASS	GPAM	CCDS7570.1	r.?	-	-	Del	intronic	D	113937439	113937446	3	18	375.85	-	-	2	1	1	GPAM|CCDS7570.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPAM|CCDS7570.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	9	19	9	0	0	./.	2	5	3	6	21	25	21	25	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736233840	10	123502276	CA	C	720	PASS	ATE1	CCDS31299.1	r.2562delU	c.?	p.?	Del	3'UTR variant	D	123502276	123502279	1	45	646.206	-	-	2	1	1	ATE1|CCDS31299.1|r.2562delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ATE1|CCDS31299.1|r.2562delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	14	10	14	10	0	0	./.	4	8	4	10	23	25	23	25	4	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736238020	11	750331	G	GA	300	PASS	TALDO1	CCDS7712.1	r.?	-	-	Ins	intronic	I	750331	750341	1	12	267.087	-	-	9	1	1	TALDO1|CCDS7712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TALDO1|CCDS7712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	13	22	13	0	0	./.	2	3	3	3	27	25	27	25	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736238976	11	3593416	CT	C	295	PASS	-	-	-	-	-	Del	-	D	3593416	3593418	1	10	270.098	-	-	1	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	5	1	28	20	28	20	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736245405	11	20371345	ACTT	A	269	PASS	-	-	-	-	-	Del	-	D	20371345	20371351	3	12	270.098	-	-	1	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	2	4	18	29	18	29	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736246124	11	22089765	TA	T	300	PASS	-	-	-	-	-	Del	-	D	22089765	22089769	1	12	270.098	-	-	3	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	2	3	4	4	26	26	26	26	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736253892	11	42805280	TG	T	360	PASS	-	-	-	-	-	Del	-	D	42805280	42805283	1	12	322.913	-	-	2	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	1	5	1	10	24	34	24	34	1	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736259634	11	61971866	G	GA	257	PASS	SCGB2A1	CCDS8016.1	r.?	-	-	Ins	upstream	I	61971866	61971875	1	12	254.444	-	-	8	1	1	SCGB2A1|CCDS8016.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SCGB2A1|CCDS8016.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	18	28	18	28	0	0	./.	2	3	3	4	27	28	27	28	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736261016	11	65434510	TA	T	420	PASS	RELA	CCDS31609.1	r.?	-	-	Del	upstream	D	65434510	65434518	1	18	377.534	-	-	7	1	1	RELA|CCDS31609.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RELA|CCDS31609.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	20	24	20	24	0	0	./.	2	5	3	6	25	31	25	31	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736268237	11	86339789	CTT	C	360	PASS	ME3	CCDS8277.1	r.?	-	-	Del	intronic	D	86339789	86339793	2	15	324.117	-	-	3	1	1	ME3|CCDS8277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ME3|CCDS8277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	4	2	4	2	24	22	24	22	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736269434	11	89442199	CT	C	276	PASS	TRIM77	ENST00000398290	r.?	-	-	Del	upstream	D	89442199	89442207	1	12	270.098	-	-	7	1	1	TRIM77|ENST00000398290|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	TRIM77|ENST00000398290|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	20	20	20	20	0	0	./.	3	2	3	2	31	25	31	25	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736272056	11	97722918	ATAG	A	267	PASS	-	-	-	-	-	Del	-	D	97722918	97722923	3	15	324.117	-	-	1	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	2	5	2	22	23	22	23	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736274786	11	104805978	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	104805978	104805987	1	28	480.155	-	-	8	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	6	3	6	3	29	26	31	26	6	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736274907	11	105255203	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	105255203	105255210	1	12	320.505	-	-	6	1	1	-	-	./.	0	0	0	0	27	10	27	10	0	0	./.	1	5	4	9	22	33	22	33	4	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736282813	11	127291353	GT	G	360	PASS	-	-	-	-	-	Del	-	D	127291353	127291360	1	15	324.117	-	-	6	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	2	4	3	5	35	31	35	31	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736283283	11	128727245	T	TC	420	PASS	KCNJ1	CCDS8477.1	r.?	-	-	Ins	intronic	I	128727245	128727249	1	14	373.922	-	-	3	1	1	KCNJ1|CCDS8477.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	KCNJ1|CCDS8477.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	1	6	2	6	20	30	20	30	2	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736292742	12	17812991	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	17812991	17812999	1	21	426.934	-	-	7	1	1	-	-	./.	0	0	0	0	19	9	20	9	0	0	./.	2	6	3	6	27	27	27	27	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736299736	12	38310914	CA	C	420	PASS	-	-	-	-	-	Del	-	D	38310914	38310916	1	20	377.18	-	-	1	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	4	3	6	8	33	35	33	35	6	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736300095	12	39273647	T	TA	300	PASS	CPNE8	CCDS8733.1	r.?	-	-	Ins	intronic	I	39273647	39273657	1	12	266.834	-	-	9	1	1	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	29	11	29	0	0	./.	3	2	4	2	28	26	28	26	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736307168	12	57842070	TTGGCTGGGCGTGG	T	290	PASS	INHBC	CCDS8938.1	r.?	-	-	Del	intronic	D	57842070	57842089	13	35	539.689	-	-	1	1	1	INHBC|CCDS8938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	INHBC|CCDS8938.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	2	9	2	0	0	./.	6	4	5	4	42	16	43	16	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736308483	12	61652018	GAT	G	300	PASS	-	-	-	-	-	Del	-	D	61652018	61652033	2	10	269.844	-	-	7	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	1	4	33	42	33	42	1	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736310334	12	65817210	AG	A	697	PASS	MSRB3	CCDS31853.1	r.?	-	-	Del	intronic	D	65817210	65817212	1	45	647.626	-	-	1	1	1	MSRB3|CCDS31853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSRB3|CCDS31853.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	19	24	19	0	0	./.	8	4	8	4	41	32	41	32	8	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736313439	12	73350952	TTTTCTGAGTTTTGCA	T	464	PASS	-	-	-	-	-	Del	-	D	73350952	73350969	15	80	862.298	-	-	1	1	1	-	-	./.	0	0	0	0	15	7	15	7	0	0	./.	9	7	11	10	33	32	33	32	11	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736314567	12	76394340	A	AT	1260	PASS	-	-	-	-	-	Ins	-	I	76394340	76394343	1	126	1115.89	-	-	2	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	8	13	13	20	24	43	24	43	13	20	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736317473	12	84729021	AAGCCAACC	A	580	PASS	-	-	-	-	-	Del	-	D	84729021	84729030	8	121	1069.14	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	10	10	11	10	28	25	28	25	11	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736323632	12	100094370	A	AT	420	PASS	ANKS1B	ENST00000329257	r.?	-	-	Ins	intronic	I	100094370	100094379	1	20	372.966	-	-	8	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	4	3	6	6	49	37	49	37	6	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736326072	12	106145488	ACAAGAC	A	433	PASS	-	-	-	-	-	Del	-	D	106145488	106145496	6	65	863.502	-	-	1	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	12	4	16	7	43	30	43	30	16	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736328027	12	110850613	GA	G	540	PASS	-	-	-	-	-	Del	-	D	110850613	110850617	1	28	485.72	-	-	3	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	6	4	8	35	45	35	45	4	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736329768	12	115249077	ACCCAAGTGT	A	484	PASS	-	-	-	-	-	Del	-	D	115249077	115249089	9	156	1239.48	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	11	12	12	13	37	28	37	28	12	13	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736330253	12	116425488	AG	A	300	PASS	MED13L	CCDS9177.1	r.?	-	-	Del	intronic	D	116425488	116425491	1	10	269.844	-	-	2	1	1	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	20	19	20	0	0	./.	4	1	4	1	30	34	30	34	4	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736331689	12	119375834	CTGGGCCATCAAGG	C	522	PASS	-	-	-	-	-	Del	-	D	119375834	119375850	13	99	971.44	-	-	1	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	10	8	11	9	22	22	22	22	11	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736331914	12	119929810	AGATGTTCTACCAT	A	551	PASS	CCDC60	CCDS9190.1	r.?	-	-	Del	intronic	D	119929810	119929826	13	108	1023.6	-	-	1	1	1	CCDC60|CCDS9190.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC60|CCDS9190.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	11	8	10	8	21	23	22	23	11	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736332085	12	120276502	A	AT	360	PASS	CIT	CCDS9192.1	r.?	-	-	Ins	intronic	I	120276502	120276510	1	15	319.599	-	-	7	1	1	CIT|CCDS9192.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CIT|CCDS9192.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	15	0	0	./.	2	4	3	6	36	37	37	37	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736340791	13	22358686	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	22358686	22358696	1	12	268.096	-	-	9	1	1	-	-	./.	0	0	0	0	16	17	16	17	0	0	./.	2	3	2	4	22	28	22	28	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736341091	13	23265952	AC	A	360	PASS	ENSG00000223616	ENST00000419468	r.?	-	-	Del	intronic	D	23265952	23265955	1	15	324.124	-	-	2	1	1	ENSG00000223616|ENST00000419468|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000223616|ENST00000419468|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	4	3	26	24	26	24	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736346427	13	37863968	AGGAG	A	329	PASS	-	-	-	-	-	Del	-	D	37863968	37863976	4	7	325.328	-	-	1	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	6	0	6	0	19	19	19	19	6	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736346834	13	39053442	AT	A	480	PASS	-	-	-	-	-	Del	-	D	39053442	39053451	1	24	433.77	-	-	8	1	-	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	3	5	7	6	22	19	22	19	7	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736348361	13	43633284	G	GT	300	PASS	DNAJC15	CCDS9388.1	r.?	-	-	Ins	intronic	I	43633284	43633292	1	10	267.494	-	-	7	1	1	DNAJC15|CCDS9388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAJC15|CCDS9388.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	25	17	25	0	0	./.	1	4	2	4	13	22	13	22	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736353881	13	62444178	ACTG	A	360	PASS	-	-	-	-	-	Del	-	D	62444178	62444184	3	16	324.726	-	-	1	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	3	3	3	4	16	21	16	21	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736356085	13	69247087	AACTCAGTTTTAAGTATC	AAATATCATTT	319	PASS	-	-	-	-	-	Complex	-	DI	69247088	69247104	17	40	0	-	-	0	1	1	-	-	./.	0	0	0	0	18	10	18	10	0	0	./.	7	4	0	0	14	16	15	17	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736356855	13	71381723	AAT	A	277	PASS	-	-	-	-	-	Del	-	D	71381723	71381727	2	10	270.504	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	1	4	2	5	15	16	15	16	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736359133	13	78547805	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	78547805	78547813	1	7	321.715	-	-	7	1	1	-	-	./.	0	0	0	0	21	22	21	23	0	0	./.	6	0	7	1	22	14	22	14	7	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736359400	13	79386009	AT	A	360	PASS	-	-	-	-	-	Del	-	D	79386009	79386011	1	15	325.328	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	4	2	5	2	20	16	20	16	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736368959	13	109831236	CA	C	360	PASS	MYO16	CCDS32008.1	r.?	-	-	Del	intronic	D	109831236	109831240	1	15	325.328	-	-	3	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	4	2	4	4	12	14	12	14	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736370846	14	20242622	ACATACTC	A	261	PASS	-	-	-	-	-	Del	-	D	20242622	20242633	7	30	487.7	-	-	1	1	1	-	-	./.	0	0	0	0	19	34	19	34	0	0	./.	5	4	5	4	48	53	48	53	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736375784	14	32186703	CT	C	960	PASS	NUBPL	CCDS41940.1	r.?	-	-	Del	intronic	D	32186703	32186705	1	65	867.023	-	-	1	1	1	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUBPL|CCDS41940.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	12	4	13	4	32	19	32	19	13	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736376222	14	33400125	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	33400125	33400133	1	15	321.521	-	-	7	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	4	2	4	2	25	25	25	25	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736378462	14	39210502	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	39210502	39210507	2	12	325.133	-	-	2	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	1	5	1	20	22	20	22	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736379324	14	41455970	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	41455970	41455972	1	16	321.521	-	-	1	1	1	-	-	./.	0	0	0	0	13	4	13	4	0	0	./.	3	3	4	6	20	11	20	11	4	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736380304	14	44269434	CA	C	360	PASS	-	-	-	-	-	Del	-	D	44269434	44269440	1	15	325.133	-	-	5	1	1	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	2	4	4	7	33	36	33	36	4	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736381862	14	48706370	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	48706370	48706380	1	20	373.302	-	-	9	1	1	-	-	./.	0	0	0	0	22	15	22	17	0	0	./.	4	3	4	4	25	29	26	29	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736382139	14	49443873	GAGA	G	480	PASS	-	-	-	-	-	Del	-	D	49443873	49443882	3	24	433.511	-	-	2	1	1	-	-	./.	0	0	0	0	7	23	7	23	0	0	./.	3	5	3	6	20	35	20	35	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736383413	14	52276373	A	AT	420	PASS	AL079307.3	ENST00000504267	r.3003_3004insu	-	-	Ins	non-coding variant	I	52276373	52276380	1	18	375.108	-	-	6	1	1	AL079307.3|ENST00000504267|r.3003_3004insu|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	AL079307.3|ENST00000504267|r.3003_3004insu|-|-|non_protein_coding:exon:insertion:nc_transcript_variant|SO:0000011:SO:0000147:SO:0000667:SO:0001619	./.	0	0	0	0	17	14	17	14	0	0	./.	5	2	6	4	26	27	26	27	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736385849	14	58200207	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	58200207	58200217	1	35	535.869	-	-	9	1	1	-	-	./.	0	0	0	0	30	14	30	15	0	0	./.	4	6	4	7	25	28	25	29	4	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736391633	14	74288964	TC	T	300	PASS	-	-	-	-	-	Del	-	D	74288964	74288966	1	6	266.128	-	-	1	1	1	-	-	./.	0	0	0	0	18	8	18	8	0	0	./.	5	0	7	0	36	22	36	22	7	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736395840	14	85148668	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	85148668	85148677	1	12	265.526	-	-	8	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	3	2	3	2	25	28	25	30	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736395944	14	85408750	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	85408750	85408757	1	16	321.521	-	-	6	1	1	-	-	./.	0	0	0	0	25	5	25	6	0	0	./.	3	3	4	6	32	28	32	28	4	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736397287	14	89364671	GTT	G	869	PASS	-	-	-	-	-	Del	-	D	89364671	89364676	2	70	810.425	-	-	4	1	1	-	-	./.	0	0	0	0	22	13	22	13	0	0	./.	6	9	10	12	36	25	36	25	10	12	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736398484	14	92442388	G	GT	420	PASS	TRIP11	CCDS9899.1	r.?	-	-	Ins	intronic	I	92442388	92442398	1	20	375.108	-	-	9	1	1	TRIP11|CCDS9899.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRIP11|CCDS9899.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	4	3	6	3	28	15	30	15	6	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736400838	14	100180369	C	CA	300	PASS	CYP46A1	CCDS9954.1	r.?	-	-	Ins	intronic	I	100180369	100180378	1	12	267.934	-	-	8	1	1	CYP46A1|CCDS9954.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CYP46A1|CCDS9954.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	2	3	3	26	22	26	22	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736401917	14	103484063	GAC	G	420	PASS	ENSG00000198752	CCDS9978.1	r.?	-	-	Del	intronic	D	103484063	103484069	2	20	379.322	-	-	2	1	1	ENSG00000198752|CCDS9978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000198752|CCDS9978.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	23	12	23	0	0	./.	3	4	3	4	22	28	22	28	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736403001	14	106442814	CT	C	314	PASS	-	-	-	-	-	Del	-	D	106442814	106442816	1	16	325.133	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	3	3	4	3	19	15	19	15	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736403871	15	20121011	CA	C	279	PASS	-	-	-	-	-	Del	-	D	20121011	20121015	1	32	542.554	-	-	3	1	1	-	-	./.	0	0	0	0	48	70	48	70	0	0	./.	7	3	10	6	181	177	181	179	10	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736409105	15	34816214	G	GC	290	PASS	GOLGA8B	CCDS45211.1	r.?	-	-	Ins	downstream	I	34816214	34816215	1	11	535.931	-	-	0	1	1	GOLGA8B|CCDS45211.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GOLGA8B|CCDS45211.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	8	8	9	0	0	./.	10	0	14	0	22	12	22	13	14	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736412891	15	45906992	CT	C	300	PASS	-	-	-	-	-	Del	-	D	45906992	45906998	1	10	271.277	-	-	5	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	1	4	2	18	24	18	24	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736419754	15	65398318	CG	C	300	PASS	AC013553.1	ENST00000502113	r.?	-	-	Del	upstream	D	65398318	65398323	1	10	271.277	-	-	4	1	1	AC013553.1|ENST00000502113|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC013553.1|ENST00000502113|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	27	4	27	4	0	0	./.	4	1	4	3	26	21	26	21	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736422984	15	75227316	C	CA	300	PASS	COX5A	CCDS10273.1	r.?	-	-	Ins	intronic	I	75227316	75227323	1	12	268.267	-	-	6	1	1	COX5A|CCDS10273.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COX5A|CCDS10273.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	18	12	18	0	0	./.	3	2	3	3	21	24	21	24	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736425517	15	82314931	A	AC	360	PASS	-	-	-	-	-	Ins	-	I	82314931	82314939	1	15	320.114	-	-	7	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	2	4	4	4	30	20	30	20	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736428536	15	91065902	CT	C	480	PASS	-	-	-	-	-	Del	-	D	91065902	91065904	1	16	420.196	-	-	1	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	7	1	9	2	28	25	28	25	9	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736429873	15	94527591	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	94527591	94527601	1	12	267.665	-	-	9	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	3	2	4	5	28	27	29	27	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736430035	15	94926542	T	TTA	300	PASS	MCTP2	CCDS32338.1	r.?	-	-	Ins	intronic	I	94926542	94926545	2	10	265.256	-	-	1	1	1	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCTP2|CCDS32338.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	1	4	2	4	35	24	36	24	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736440815	16	18308998	TGGTG	T	356	PASS	-	-	-	-	-	Del	-	D	18308998	18309005	4	20	377.95	-	-	1	1	1	-	-	./.	0	0	0	0	10	28	10	28	0	0	./.	3	4	3	4	22	23	22	23	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736443572	16	24770386	C	CA	420	PASS	TNRC6A	CCDS10624.2	r.?	-	-	Ins	intronic	I	24770386	24770395	1	14	374.338	-	-	8	1	1	TNRC6A|CCDS10624.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TNRC6A|CCDS10624.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	14	27	14	0	0	./.	6	1	11	2	30	32	30	32	11	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736446610	16	32108432	G	GTTAT	261	PASS	-	-	-	-	-	Ins	-	I	32108432	32108435	4	17	826.902	-	-	0	1	1	-	-	./.	0	0	0	0	33	34	35	35	0	0	./.	16	0	16	0	166	86	170	86	16	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736447168	16	32604906	CT	C	300	PASS	-	-	-	-	-	Del	-	D	32604906	32604916	1	10	269.018	-	-	9	1	1	-	-	./.	0	0	0	0	20	36	20	36	0	0	./.	1	4	2	4	47	57	47	57	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736455774	16	66122094	CG	C	420	PASS	-	-	-	-	-	Del	-	D	66122094	66122096	1	20	379.154	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	4	7	6	16	23	16	23	7	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736464083	16	88990904	A	AG	660	PASS	CBFA2T3	CCDS10972.1	r.?	-	-	Ins	intronic	I	88990904	88990907	1	30	586.783	-	-	2	1	1	CBFA2T3|CCDS10972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CBFA2T3|CCDS10972.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	9	2	11	3	27	24	27	24	11	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736476413	17	31784110	TAATA	T	360	PASS	ACCN1	CCDS42296.1	r.?	-	-	Del	intronic	D	31784110	31784118	4	12	324.962	-	-	1	1	1	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACCN1|CCDS42296.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	9	17	9	0	0	./.	1	5	1	6	30	23	30	23	1	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736478444	17	37378010	CTCACCCTCGCCTCTCAGCTGGGCCCTGCCTGGGCCA	C	540	PASS	STAC2	CCDS11335.1	r.?	-	-	Del	intronic	D	37378010	37378055	36	30	487.444	-	-	1	1	1	STAC2|CCDS11335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STAC2|CCDS11335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	4	0	0	29	32	32	34	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736481648	17	44035497	A	ACC	480	PASS	MAPT	CCDS45715.1	r.?	-	-	Ins	intronic	I	44035497	44035500	2	16	423.65	-	-	2	1	1	MAPT|CCDS45715.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MAPT|CCDS45715.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	7	4	7	23	24	23	24	4	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736486369	17	54354956	T	TA	300	PASS	ANKFN1	CCDS32686.1	r.?	-	-	Ins	intronic	I	54354956	54354963	1	12	267.792	-	-	6	1	1	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	2	4	2	37	31	39	31	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736486505	17	54764284	AGGCAGGAGAAT	A	435	PASS	-	-	-	-	-	Del	-	D	54764284	54764299	11	72	808.192	-	-	1	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	7	8	7	8	29	28	29	28	7	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736489069	17	60087528	G	GC	300	PASS	MED13	CCDS42366.1	r.?	-	-	Ins	intronic	I	60087528	60087531	1	6	260.567	-	-	2	1	1	MED13|CCDS42366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED13|CCDS42366.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	16	23	16	0	0	./.	0	5	2	6	25	42	25	43	2	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736489820	17	61644670	C	CA	300	PASS	KCNH6	CCDS11638.1	r.?	-	-	Ins	intronic	I	61644670	61644680	1	10	267.19	-	-	9	1	1	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	13	0	0	./.	1	4	1	5	43	46	44	46	1	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736490209	17	62626003	TG	T	480	PASS	SMURF2	CCDS32707.1	r.?	-	-	Del	intronic	D	62626003	62626010	1	24	433.283	-	-	6	1	1	SMURF2|CCDS32707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMURF2|CCDS32707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	5	3	5	4	23	29	23	29	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736491400	17	65014929	G	GAT	960	PASS	CACNG4	CCDS11667.1	r.?	-	-	Ins	intronic	I	65014929	65014936	2	81	844.29	-	-	3	1	1	CACNG4|CCDS11667.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CACNG4|CCDS11667.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	8	8	8	9	31	35	32	36	8	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736492052	17	66053608	TCA	T	360	PASS	-	-	-	-	-	Del	-	D	66053608	66053625	2	15	324.36	-	-	8	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	4	2	4	2	43	26	43	26	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736499224	17	80710339	CCGGCGGCGCCGGC	CT	290	PASS	TBCD	CCDS45818.1	r.?	-	-	Complex	intronic	DI	80710340	80710352	13	32	0	-	-	0	1	1	TBCD|CCDS45818.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	TBCD|CCDS45818.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	22	21	22	21	0	0	./.	3	7	0	0	50	49	50	49	3	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736502980	18	9053996	ATC	A	300	PASS	-	-	-	-	-	Del	-	D	9053996	9054002	2	6	271.391	-	-	2	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	5	0	5	1	24	8	24	8	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736507656	18	24778174	TC	T	360	PASS	-	-	-	-	-	Del	-	D	24778174	24778176	1	16	325.669	-	-	1	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	4	4	20	17	20	17	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736517468	18	58791231	GT	G	540	PASS	-	-	-	-	-	Del	-	D	58791231	58791235	1	30	488.504	-	-	3	1	1	-	-	./.	0	0	0	0	19	15	19	15	0	0	./.	4	5	6	8	21	27	21	27	6	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736518501	18	61793624	AG	A	300	PASS	-	-	-	-	-	Del	-	D	61793624	61793626	1	12	270.789	-	-	1	1	1	-	-	./.	0	0	0	0	16	16	16	16	0	0	./.	3	2	4	2	27	14	27	14	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736544668	19	50602013	TA	T	319	PASS	-	-	-	-	-	Del	-	D	50602013	50602023	1	12	597.088	-	-	9	1	1	-	-	./.	0	0	0	0	16	0	20	0	0	0	./.	11	0	17	0	112	0	113	0	17	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736548254	19	57728795	C	CT	269	PASS	ZNF264	CCDS33127.1	r.6743_6744insu	c.?	p.?	Ins	3'UTR variant	I	57728795	57728804	1	10	267.791	-	-	8	1	1	ZNF264|CCDS33127.1|r.6743_6744insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ZNF264|CCDS33127.1|r.6743_6744insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	15	12	15	12	0	0	./.	1	4	1	5	34	28	34	29	1	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736555098	2	19638490	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	19638490	19638500	1	25	425.59	-	-	9	1	1	-	-	./.	0	0	0	0	11	16	13	17	0	0	./.	4	4	6	4	32	34	33	34	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736559843	2	33748098	A	AT	300	PASS	RASGRP3	CCDS46256.1	r.?	-	-	Ins	intronic	I	33748098	33748107	1	12	265.391	-	-	8	1	1	RASGRP3|CCDS46256.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RASGRP3|CCDS46256.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	14	25	14	0	0	./.	2	3	9	5	24	17	24	17	9	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736560021	2	34143509	AG	A	393	PASS	-	-	-	-	-	Del	-	D	34143509	34143512	1	20	376.605	-	-	2	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	3	4	6	5	23	22	23	22	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736565975	2	50627879	G	GA	300	PASS	NRXN1	CCDS46282.1	r.?	-	-	Ins	intronic	I	50627879	50627887	1	12	265.391	-	-	7	1	1	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN1|CCDS46282.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	3	2	4	2	35	26	35	26	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736572850	2	71436939	CT	C	480	PASS	PAIP2B	CCDS46322.1	r.?	-	-	Del	intronic	D	71436939	71436944	1	24	429.202	-	-	4	1	1	PAIP2B|CCDS46322.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PAIP2B|CCDS46322.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	10	21	10	0	0	./.	3	5	7	6	33	23	33	23	7	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736575815	2	81751885	GTTTGT	G	389	PASS	-	-	-	-	-	Del	-	D	81751885	81751893	5	18	376.003	-	-	1	1	1	-	-	./.	0	0	0	0	22	10	22	10	0	0	./.	5	2	5	2	26	15	26	15	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736578868	2	91629614	CA	C	298	PASS	-	-	-	-	-	Del	-	D	91629614	91629619	1	14	697.002	-	-	4	1	1	-	-	./.	0	0	0	0	60	73	60	73	0	0	./.	0	13	0	15	59	268	59	268	0	15	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736578936	2	91668740	CT	C	399	PASS	-	-	-	-	-	Del	-	D	91668740	91668743	1	16	807.011	-	-	2	1	1	-	-	./.	0	0	0	0	58	53	58	53	0	0	./.	15	0	23	0	107	61	107	61	23	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736582539	2	103768910	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	103768910	103768916	1	12	265.391	-	-	5	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	2	3	2	5	26	29	26	30	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736586929	2	118263901	ATTGGT	A	329	PASS	-	-	-	-	-	Del	-	D	118263901	118263908	5	15	322.805	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	2	5	3	18	16	18	16	5	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736598054	2	153324970	G	GT	300	PASS	FMNL2	CCDS46429.1	r.?	-	-	Ins	intronic	I	153324970	153324980	1	12	264.789	-	-	9	1	1	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	14	18	14	0	0	./.	3	2	3	2	34	29	34	29	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736606036	2	178391853	AT	A	360	PASS	AGPS	CCDS2275.1	r.?	-	-	Del	intronic	D	178391853	178391863	1	15	322.805	-	-	9	1	1	AGPS|CCDS2275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGPS|CCDS2275.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	4	3	6	23	14	23	14	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736606875	2	181367879	TTCGTTATATACTTCAAAAATTTATAACAATATAA	T	348	PASS	-	-	-	-	-	Del	-	D	181367879	181367915	34	48	643.803	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	7	5	6	4	18	17	19	18	7	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736609337	2	189571380	AC	A	420	PASS	-	-	-	-	-	Del	-	D	189571380	189571385	1	18	376.605	-	-	4	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	2	10	4	31	19	31	19	10	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736614733	2	205776641	T	TA	300	PASS	PARD3B	CCDS42806.1	r.?	-	-	Ins	intronic	I	205776641	205776650	1	10	265.994	-	-	8	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	14	21	14	0	0	./.	1	4	5	4	21	35	23	35	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736614893	2	206261773	ATAAT	A	269	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	206261773	206261781	4	12	268.402	-	-	1	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	20	8	20	0	0	./.	2	3	3	3	19	19	19	19	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736627998	20	1558451	GCCCTGGA	G	421	PASS	SIRPB1	CCDS13019.1	r.?	-	-	Del	intronic	D	1558451	1558460	7	70	814.64	-	-	1	1	1	SIRPB1|CCDS13019.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIRPB1|CCDS13019.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	9	6	12	7	29	23	29	23	12	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736630653	20	8053052	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	8053052	8053062	1	12	265.526	-	-	9	1	1	-	-	./.	0	0	0	0	25	17	26	17	0	0	./.	3	2	3	4	39	38	39	38	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736634510	20	19463904	TACTA	T	360	PASS	SLC24A3	CCDS13140.1	r.?	-	-	Del	intronic	D	19463904	19463915	4	15	324.05	-	-	2	1	1	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC24A3|CCDS13140.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	22	8	22	0	0	./.	2	4	2	4	24	22	24	22	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736638888	20	31097630	AG	A	389	PASS	C20orf112	ENST00000419612	r.267delC	c.?	p.?	Del	3'UTR variant	D	31097630	31097636	1	20	379.563	-	-	5	1	1	C20orf112|ENST00000419612|r.267delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	C20orf112|ENST00000419612|r.267delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	12	7	12	7	0	0	./.	3	4	5	5	36	14	36	14	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736640311	20	34877874	AT	A	300	PASS	-	-	-	-	-	Del	-	D	34877874	34877880	1	12	271.547	-	-	5	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	4	4	26	35	26	35	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736642972	20	42570338	TA	T	360	PASS	TOX2	CCDS42875.1	r.?	-	-	Del	upstream	D	42570338	42570341	1	12	323.448	-	-	2	1	1	TOX2|CCDS42875.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TOX2|CCDS13324.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	17	18	17	0	0	./.	5	1	5	1	35	30	35	30	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736647809	20	52813186	T	TC	360	PASS	-	-	-	-	-	Ins	-	I	52813186	52813194	1	16	322.244	-	-	7	1	1	-	-	./.	0	0	0	0	17	20	18	20	0	0	./.	3	3	5	3	49	32	49	32	5	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736654209	21	10797343	A	ATTTAC	312	PASS	ENSG00000232449	ENST00000456599	r.?	-	-	Ins	downstream	I	10797343	10797345	5	48	616.455	-	-	0	1	1	ENSG00000232449|ENST00000456599|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000232449|ENST00000456599|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	50	56	50	56	0	0	./.	5	7	0	0	130	97	130	98	5	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736672272	22	24604552	AT	A	269	PASS	-	-	-	-	-	Del	-	D	24604552	24604555	1	10	259.814	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	1	4	3	5	23	21	23	21	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736679425	22	44101191	ACAGATCATC	A	261	PASS	EFCAB6	CCDS14049.1	r.?	-	-	Del	intronic	D	44101191	44101206	9	30	488.496	-	-	1	1	1	EFCAB6|CCDS14049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EFCAB6|CCDS14049.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	5	4	6	5	20	18	20	18	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736684901	3	8694132	CATGTCTACCCAGACTGTCTTCT	C	261	PASS	C3orf32	CCDS2568.1	r.?	-	-	Del	intronic	D	8694132	8694157	22	28	485.18	-	-	1	1	1	C3orf32|CCDS2568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C3orf32|CCDS2568.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	6	3	6	3	24	19	24	19	6	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736688691	3	19963077	T	TG	420	PASS	EFHB	CCDS33715.2	r.?	-	-	Ins	intronic	I	19963077	19963085	1	18	369.536	-	-	7	1	1	EFHB|CCDS33715.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EFHB|CCDS33715.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	5	2	6	2	19	21	20	22	6	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736689678	3	22327167	TC	T	418	PASS	-	-	-	-	-	Del	-	D	22327167	22327174	1	24	431.271	-	-	6	1	1	-	-	./.	0	0	0	0	16	19	16	19	0	0	./.	3	5	5	5	28	22	28	22	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736691820	3	29344015	A	AT	300	PASS	RBMS3	CCDS33725.1	r.?	-	-	Ins	intronic	I	29344015	29344016	1	12	266.534	-	-	0	1	1	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBMS3|CCDS33725.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	21	14	21	0	0	./.	2	3	2	5	23	25	23	25	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736698608	3	50598533	GCC	G	780	PASS	C3orf18	CCDS2829.1	r.?	-	-	Del	intronic	D	50598533	50598537	2	54	700.816	-	-	3	1	1	C3orf18|CCDS2829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C3orf18|CCDS2829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	5	8	6	9	18	20	18	20	6	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736702063	3	61184208	T	TTG	298	PASS	FHIT	CCDS2894.1	r.?	-	-	Ins	intronic	I	61184208	61184209	2	12	316.229	-	-	0	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	5	1	0	0	24	18	24	18	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736703032	3	64042130	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	64042130	64042146	2	12	269.544	-	-	7	1	-	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	3	2	4	2	27	22	27	22	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736708604	3	78667759	T	TA	300	PASS	ROBO1	CCDS46872.1	r.?	-	-	Ins	intronic	I	78667759	78667768	1	12	266.534	-	-	8	1	1	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO1|CCDS46872.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	3	2	6	2	25	22	25	22	6	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736710389	3	84723802	AG	A	420	PASS	-	-	-	-	-	Del	-	D	84723802	84723805	1	14	377.362	-	-	2	1	1	-	-	./.	0	0	0	0	18	16	18	16	0	0	./.	1	6	2	7	20	22	20	22	2	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736710647	3	85564008	AG	A	360	PASS	CADM2	ENST00000383699	r.?	-	-	Del	intronic	D	85564008	85564010	1	16	322.851	-	-	1	1	1	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CADM2|ENST00000383699|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	9	22	9	0	0	./.	3	3	6	5	25	24	25	24	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736711457	3	88119114	G	GT	300	PASS	CGGBP1	CCDS43111.1	r.?	-	-	Ins	intronic	I	88119114	88119122	1	12	266.534	-	-	7	1	1	CGGBP1|CCDS43111.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CGGBP1|CCDS43111.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	12	11	0	0	./.	2	3	2	4	23	25	23	25	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736712874	3	95554621	CT	C	540	PASS	-	-	-	-	-	Del	-	D	95554621	95554626	1	18	485.18	-	-	4	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	8	1	10	2	25	10	25	10	10	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736717637	3	110938621	TC	T	480	PASS	PVRL3	ENST00000485506	r.?	-	-	Del	intronic	D	110938621	110938627	1	24	428.863	-	-	5	1	1	PVRL3|ENST00000485506|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PVRL3|ENST00000485506|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	5	3	5	3	33	24	33	24	5	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736717756	3	111357313	GA	G	300	PASS	CD96	CCDS2959.1	r.?	-	-	Del	intronic	D	111357313	111357319	1	12	269.544	-	-	5	1	1	CD96|CCDS2959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CD96|CCDS2959.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	2	3	2	3	27	22	27	22	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736723080	3	128149823	TCCATGCCAGTCCTGAGGAGCAGTGCCACTCAG	T	278	PASS	-	-	-	-	-	Del	-	D	128149823	128149858	32	36	530.058	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	5	2	4	16	22	19	23	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736723459	3	129406352	GC	G	300	PASS	TMCC1	CCDS33855.1	r.?	-	-	Del	intronic	D	129406352	129406354	1	12	269.544	-	-	1	1	1	TMCC1|CCDS33855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMCC1|CCDS33855.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	25	13	25	0	0	./.	3	2	5	2	37	15	37	15	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736723819	3	130387656	TATACTAGTTTGAATATTG	T	319	PASS	COL6A6	CCDS46911.1	r.?	-	-	Del	intronic	D	130387656	130387678	18	40	592.998	-	-	1	1	1	COL6A6|CCDS46911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL6A6|CCDS46911.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	4	7	2	3	9	16	11	20	4	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736731713	3	156356292	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	156356292	156356301	1	12	265.932	-	-	8	1	1	-	-	./.	0	0	0	0	22	10	22	11	0	0	./.	3	2	3	4	29	28	29	28	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736733238	3	161545202	TC	T	360	PASS	-	-	-	-	-	Del	-	D	161545202	161545204	1	12	323.453	-	-	1	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	5	2	7	24	28	24	28	2	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736734202	3	163812400	TCGATTATTTATAAAAATGTC	T	261	PASS	-	-	-	-	-	Del	-	D	163812400	163812422	20	28	483.374	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	3	6	3	6	24	24	24	24	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736735160	3	167069958	TA	T	420	PASS	ZBBX	CCDS3199.2	r.?	-	-	Del	intronic	D	167069958	167069965	1	20	377.362	-	-	6	1	1	ZBBX|CCDS3199.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZBBX|CCDS3199.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	3	4	6	4	31	29	31	29	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736752499	4	20301147	CT	C	509	PASS	SLIT2	ENST00000504154	r.?	-	-	Del	intronic	D	20301147	20301152	1	30	484.073	-	-	4	1	1	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLIT2|ENST00000504154|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	19	11	19	0	0	./.	5	4	5	5	30	16	30	16	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736753111	4	22207698	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	22207698	22207708	1	12	262.641	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	2	3	4	3	25	36	25	36	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736756797	4	32566765	AT	A	360	PASS	-	-	-	-	-	Del	-	D	32566765	32566770	1	16	323.117	-	-	4	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	3	3	4	5	24	21	24	21	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736756819	4	32604526	CG	C	300	PASS	-	-	-	-	-	Del	-	D	32604526	32604528	1	12	268.662	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	3	2	3	3	24	27	24	27	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736776648	4	87671503	CCTACT	C	567	PASS	PTPN13	CCDS47093.1	r.?	-	-	Del	intronic	D	87671503	87671509	5	42	592.38	-	-	1	1	1	PTPN13|CCDS47093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPN13|CCDS47093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	16	19	16	0	0	./.	5	6	5	7	23	28	23	28	5	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736776855	4	88089874	G	GTATATATATGTGTATATATATACGTA	389	PASS	KLHL8	CCDS3617.1	r.?	-	-	Ins	intronic	I	88089874	88089888	26	20	266.792	-	-	0	1	-	KLHL8|CCDS3617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLHL8|CCDS3617.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	3	0	0	24	30	24	30	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736778895	4	94491290	A	AAT	300	PASS	GRID2	CCDS3637.1	r.?	-	-	Ins	intronic	I	94491290	94491291	2	10	263.243	-	-	0	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	1	4	1	4	17	19	17	19	1	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736783396	4	110105159	G	GA	300	PASS	COL25A1	CCDS43258.1	r.?	-	-	Ins	intronic	I	110105159	110105167	1	12	265.049	-	-	7	1	1	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL25A1|CCDS43258.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	16	22	16	0	0	./.	2	3	3	4	19	14	19	14	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736784072	4	112331471	TA	T	300	PASS	-	-	-	-	-	Del	-	D	112331471	112331474	1	12	269.264	-	-	2	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	3	2	3	2	20	18	20	18	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736788714	4	126623692	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	126623692	126623699	1	10	266.254	-	-	6	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	1	4	1	8	17	31	17	31	1	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736790428	4	132316586	TTAA	T	420	PASS	-	-	-	-	-	Del	-	D	132316586	132316594	3	20	376.969	-	-	2	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	4	3	6	4	21	22	21	22	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736792714	4	140042492	GACCTCGTGATTCACCCGCCTTGGCCTCCGAAAGTGCTGGGATTACAGGTGTGAACCACCATGCCCAGCCTAGTCTGGTCTTAAAAGATTTCTATCAACACTTATTTATTATTGAGTTCATTGGTATAAACGTGGTGCTTGTTAAATGGTAATTTGTAACAACCTTTTAAATTTATATTATATATAATTTTTATAATTTTTTAAAGTGAACATAAAAACTGTACTTTCAAACTCCTGTAGTGAATCCAAAAAACTCCTTCCCTCCCCTCATTCACCATACCAGTCTATCCAGCAGGCCCCTAGAACTGATGGAGTCTGCAGCCACTGGGGAAGATATGTTATACCTGCCAGAGTCAAGACCACCCTTCACCTATATTTCATCACTCTTCCTCAAAGTCTCTTTATAATTACTAATCTGCCATTGTTATCACAAGCAATTTACTATATGTTTAGATGAATATGCCTATTTTTAAAGTTTCAAAATAGAATTGGTTTCTCCTATACAATTTAAGAGAACATCAGTATTACACATAACCTCTGTGAGGGAAACGTAGACTGTTAATCTACAAAAAGGAGAAACAAACAGCTCGTAATTCCTACTAACAAAAGAGAAATTCTTTTATATGCAAAATAATAAAGATGGCTACATGCAAATCATAATATGATTTTAGTACTCCAACACAAA	G	290	PASS	ELF2	CCDS3744.1	r.?	-	-	Del	intronic	D	140042492	140043177	684	36	537.324	-	-	1	1	1	ELF2|CCDS3744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELF2|CCDS3744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	5	5	0	0	7	12	12	17	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736805778	4	178103197	GTAAACATGTAA	G	319	PASS	-	-	-	-	-	Del	-	D	178103197	178103213	11	40	592.38	-	-	1	1	1	-	-	./.	0	0	0	0	19	17	19	17	0	0	./.	7	4	7	4	37	32	37	32	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736806531	4	179983607	A	AT	480	PASS	-	-	-	-	-	Ins	-	I	179983607	179983616	1	24	426.006	-	-	8	1	1	-	-	./.	0	0	0	0	14	20	14	20	0	0	./.	3	5	3	5	32	33	33	34	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736807171	4	181433370	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	181433370	181433380	1	50	692.259	-	-	9	1	1	-	-	./.	0	0	0	0	21	15	21	15	0	0	./.	9	4	12	9	37	37	37	38	12	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736808034	4	183372602	TG	T	540	PASS	ODZ3	CCDS47165.1	r.?	-	-	Del	intronic	D	183372602	183372605	1	30	484.675	-	-	2	1	1	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ODZ3|CCDS47165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	6	22	6	0	0	./.	4	5	4	5	29	29	29	29	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736810349	4	188312755	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	188312755	188312764	1	16	319.504	-	-	8	1	1	-	-	./.	0	0	0	0	30	16	30	16	0	0	./.	3	3	4	3	33	31	33	32	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736817340	5	12864922	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	12864922	12864932	1	10	266.673	-	-	9	1	1	-	-	./.	0	0	0	0	19	19	19	19	0	0	./.	1	4	1	5	25	27	25	29	1	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736820657	5	21195052	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	21195052	21195058	1	16	317.599	-	-	5	1	1	-	-	./.	0	0	0	0	18	14	18	14	0	0	./.	3	3	3	7	26	48	27	48	3	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736824062	5	29715587	TAA	T	600	PASS	-	-	-	-	-	Del	-	D	29715587	29715591	2	36	539.366	-	-	3	1	1	-	-	./.	0	0	0	0	15	20	15	20	0	0	./.	5	5	8	7	30	20	30	20	8	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736824247	5	30107991	ATTAAAAACTATCTC	ACTGATGT	377	PASS	-	-	-	-	-	Complex	-	DI	30107992	30108005	14	56	0	-	-	0	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	7	6	0	0	23	20	23	21	7	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736827467	5	38079778	TG	T	360	PASS	-	-	-	-	-	Del	-	D	38079778	38079785	1	12	323.62	-	-	6	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	1	5	2	9	22	33	22	33	2	9	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736827517	5	38267960	A	AT	300	PASS	EGFLAM	CCDS3924.1	r.?	-	-	Ins	intronic	I	38267960	38267961	1	12	266.071	-	-	0	1	1	EGFLAM|CCDS3924.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EGFLAM|CCDS3924.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	20	12	20	0	0	./.	3	2	6	3	45	41	45	41	6	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736828304	5	40307244	TTTTATCAGAGTCCACA	T	348	PASS	-	-	-	-	-	Del	-	D	40307244	40307262	16	33	646.035	-	-	1	1	1	-	-	./.	0	0	0	0	12	21	12	21	0	0	./.	2	10	3	9	18	23	18	24	3	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736828593	5	41111953	TG	T	480	PASS	-	-	-	-	-	Del	-	D	41111953	41111956	1	25	430.891	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	4	7	4	28	28	28	28	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736829757	5	44897407	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	44897407	44897416	1	16	320.007	-	-	8	1	1	-	-	./.	0	0	0	0	14	16	14	17	0	0	./.	3	3	4	5	29	33	30	33	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736831140	5	52841811	GCT	G	360	PASS	-	-	-	-	-	Del	-	D	52841811	52841815	2	16	323.62	-	-	1	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	3	3	3	4	30	16	30	16	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736838156	5	76202116	TA	T	300	PASS	S100Z	CCDS43333.1	r.?	-	-	Del	intronic	D	76202116	76202121	1	10	269.683	-	-	4	1	1	S100Z|CCDS43333.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	S100Z|CCDS43333.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	22	16	22	0	0	./.	4	1	4	1	23	21	23	21	4	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736841571	5	85627349	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	85627349	85627357	1	12	266.673	-	-	7	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	4	2	23	24	23	24	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736842112	5	87770096	ACTG	A	300	PASS	-	-	-	-	-	Del	-	D	87770096	87770102	3	12	269.683	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	3	2	4	21	23	21	23	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736843436	5	93291329	CTTT	C	600	PASS	MIR2277	CCDS4069.1	r.?	-	-	Del	intronic	D	93291329	93291336	3	36	539.366	-	-	6	1	1	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR2277|CCDS4069.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	15	13	15	0	0	./.	5	5	6	7	24	16	24	16	6	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736849224	5	113215318	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	113215318	113215321	1	15	320.007	-	-	2	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	2	4	2	4	18	24	18	24	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736860859	5	148707407	AAGAG	A	360	PASS	AFAP1L1	CCDS34274.1	r.?	-	-	Del	intronic	D	148707407	148707421	4	16	323.018	-	-	6	1	1	AFAP1L1|CCDS34274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AFAP1L1|CCDS34274.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	3	3	5	7	22	29	22	29	5	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736879334	6	18462127	GT	G	300	PASS	RNF144B	CCDS34345.1	r.?	-	-	Del	intronic	D	18462127	18462130	1	12	269.707	-	-	2	1	1	RNF144B|CCDS34345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RNF144B|CCDS34345.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	3	2	3	2	18	21	18	21	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736881718	6	24401572	G	GT	300	PASS	MRS2	CCDS4552.1	r.?	-	-	Ins	upstream	I	24401572	24401582	1	12	266.697	-	-	9	1	1	MRS2|CCDS4552.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	MRS2|CCDS4552.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	22	19	23	19	0	0	./.	3	2	3	3	22	15	22	15	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736888121	6	36961014	GTGGGCTCTTGCA	G	464	PASS	-	-	-	-	-	Del	-	D	36961014	36961030	12	81	861.257	-	-	1	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	8	8	8	8	31	26	31	26	8	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736904293	6	85720275	T	TTATGTCAGTTTTTATGTC	261	PASS	-	-	-	-	-	Ins	-	I	85720275	85720276	18	30	387.939	-	-	0	1	1	-	-	./.	0	0	0	0	15	12	16	12	0	0	./.	4	5	2	5	14	31	16	31	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736904557	6	86425695	CT	C	540	PASS	-	-	-	-	-	Del	-	D	86425695	86425702	1	28	485.473	-	-	6	1	1	-	-	./.	0	0	0	0	19	27	19	27	0	0	./.	3	6	3	7	28	38	28	38	3	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736907308	6	94656296	ATCTG	A	360	PASS	-	-	-	-	-	Del	-	D	94656296	94656304	4	15	323.649	-	-	1	1	1	-	-	./.	0	0	0	0	17	16	17	16	0	0	./.	4	2	4	2	37	18	37	18	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736910596	6	105555309	A	AT	509	PASS	BVES	CCDS5051.1	r.?	-	-	Ins	intronic	I	105555309	105555311	1	30	480.055	-	-	1	1	1	BVES|CCDS5051.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BVES|CCDS5051.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	11	0	0	./.	4	5	5	5	27	27	27	27	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736911956	6	109585180	GGAA	G	300	PASS	-	-	-	-	-	Del	-	D	109585180	109585194	3	10	269.707	-	-	4	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	1	4	1	5	13	27	13	27	1	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736914543	6	118037240	TG	T	300	PASS	-	-	-	-	-	Del	-	D	118037240	118037243	1	10	269.707	-	-	2	1	1	-	-	./.	0	0	0	0	12	17	12	17	0	0	./.	4	1	7	1	17	14	17	14	7	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736914973	6	119373391	TTCTTCATTTCTTCCTTTCACACCTAAA	TCTG	261	PASS	FAM184A	CCDS43500.1	r.?	-	-	Complex	intronic	DI	119373392	119373418	27	28	0	-	-	0	1	1	FAM184A|CCDS43500.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	FAM184A|CCDS43500.1|r.?|-|-|protein_coding:five_prime_UTR:intron:indel:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	6	3	0	0	20	20	21	21	6	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736918282	6	131113543	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	131113543	131113547	1	12	266.697	-	-	3	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	4	2	19	21	19	21	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736922390	6	146074028	TAATGG	T	269	PASS	-	-	-	-	-	Del	-	D	146074028	146074039	5	12	269.707	-	-	2	1	1	-	-	./.	0	0	0	0	21	19	21	19	0	0	./.	2	3	3	5	19	29	19	29	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736922391	6	146074246	ATT	A	420	PASS	-	-	-	-	-	Del	-	D	146074246	146074256	2	14	376.386	-	-	9	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	6	1	6	1	15	12	15	12	6	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736927135	6	160535794	CCCGGGCCGGCAGGG	C	377	PASS	-	-	-	-	-	Del	-	D	160535794	160535813	14	54	698.831	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	8	5	7	5	26	29	27	29	8	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736937138	7	15861859	GA	G	360	PASS	-	-	-	-	-	Del	-	D	15861859	15861869	1	15	323.623	-	-	9	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	2	4	2	6	26	24	26	24	2	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736940329	7	24310856	GAA	G	360	PASS	-	-	-	-	-	Del	-	D	24310856	24310862	2	16	323.623	-	-	5	1	1	-	-	./.	0	0	0	0	19	18	19	18	0	0	./.	3	3	3	3	36	33	36	33	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736940639	7	25185765	CAG	C	300	PASS	C7orf31	CCDS5394.1	r.?	-	-	Del	intronic	D	25185765	25185783	2	12	269.686	-	-	8	1	-	C7orf31|CCDS5394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf31|CCDS5394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	2	3	2	3	26	35	26	35	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736940713	7	25440328	CA	C	300	PASS	-	-	-	-	-	Del	-	D	25440328	25440336	1	10	269.686	-	-	7	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	1	6	1	27	28	27	28	6	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736945947	7	39666385	A	AT	329	PASS	RALA	CCDS5460.1	r.?	-	-	Ins	intronic	I	39666385	39666394	1	15	309.173	-	-	8	1	1	RALA|CCDS5460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RALA|CCDS5460.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	4	2	4	3	28	41	28	43	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736946275	7	40249656	C	CT	360	PASS	C7orf10	ENST00000309930	r.?	-	-	Ins	intronic	I	40249656	40249665	1	16	320.01	-	-	8	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	3	3	3	32	30	32	30	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736946397	7	40498954	G	GT	300	PASS	C7orf10	ENST00000309930	r.?	-	-	Ins	intronic	I	40498954	40498962	1	12	263.665	-	-	7	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	2	4	19	19	19	19	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736947900	7	44836986	T	TC	600	PASS	PPIA	CCDS5494.1	r.?	-	-	Ins	intronic	I	44836986	44836987	1	32	531.544	-	-	0	1	1	PPIA|CCDS5494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPIA|CCDS5494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	3	7	3	10	25	41	26	42	3	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736948377	7	45960305	TGCACG	T	418	PASS	IGFBP3	CCDS34632.1	r.532+9_532+13delcgugc	c.421+9_421+13delcgtgc	p.?	Del	splice region	D	45960305	45960311	5	21	426.68	-	-	1	1	1	IGFBP3|CCDS34632.1|r.532+9_532+13delcgugc|c.421+9_421+13delcgtgc|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	IGFBP3|CCDS34632.1|r.532+9_532+13delcgugc|c.421+9_421+13delcgtgc|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	20	14	20	14	0	0	./.	2	6	4	8	51	27	51	27	4	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736948994	7	47943154	TTCAG	T	329	PASS	PKD1L1	CCDS34633.1	r.?	-	-	Del	intronic	D	47943154	47943161	4	12	318.806	-	-	1	1	1	PKD1L1|CCDS34633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKD1L1|CCDS34633.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	5	1	5	2	38	37	38	37	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736950774	7	52790215	AGGGC	A	269	PASS	-	-	-	-	-	Del	-	D	52790215	52790222	4	12	269.686	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	2	3	2	3	27	27	27	27	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736952504	7	56609511	TAAGC	T	329	PASS	-	-	-	-	-	Del	-	D	56609511	56609519	4	12	321.816	-	-	1	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	1	5	1	30	31	30	31	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736959235	7	71807964	GT	G	449	PASS	CALN1	CCDS47603.1	r.?	-	-	Del	intronic	D	71807964	71807968	1	24	429.089	-	-	3	1	1	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CALN1|CCDS47603.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	17	15	17	0	0	./.	3	5	4	8	19	23	19	23	4	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736962368	7	80270795	ACT	A	360	PASS	CD36	CCDS34673.1	r.?	-	-	Del	intronic	D	80270795	80270802	2	16	323.623	-	-	3	1	1	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CD36|CCDS34673.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	3	3	3	3	20	26	20	26	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736962680	7	81431135	ACTTTCAATAGCACGCTGG	A	261	PASS	-	-	-	-	-	Del	-	D	81431135	81431157	18	30	485.434	-	-	1	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	4	5	3	5	17	22	18	22	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736963698	7	84648073	TTACGGAACAC	T	261	PASS	SEMA3D	CCDS34676.1	r.?	-	-	Del	intronic	D	84648073	84648087	10	24	485.434	-	-	1	1	1	SEMA3D|CCDS34676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEMA3D|CCDS34676.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	25	16	25	0	0	./.	2	7	3	6	22	27	22	28	3	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736964050	7	85650503	GCAGA	G	420	PASS	-	-	-	-	-	Del	-	D	85650503	85650510	4	20	377.56	-	-	1	1	1	-	-	./.	0	0	0	0	13	17	13	17	0	0	./.	4	3	4	3	20	27	20	27	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736966489	7	94111835	ATATTC	A	298	PASS	-	-	-	-	-	Del	-	D	94111835	94111843	5	15	322.419	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	2	4	3	4	15	22	15	22	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736971440	7	107406612	AC	A	600	PASS	SLC26A3	CCDS5748.1	r.?	-	-	Del	intronic	D	107406612	107406617	1	36	538.769	-	-	4	1	1	SLC26A3|CCDS5748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC26A3|CCDS5748.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	5	5	6	5	24	28	24	28	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736971606	7	107990777	ATGG	A	418	PASS	NRCAM	CCDS47686.1	r.?	-	-	Del	intronic	D	107990777	107990781	3	25	430.895	-	-	1	1	1	NRCAM|CCDS47686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NRCAM|CCDS47686.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	4	4	5	5	26	23	26	23	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736973283	7	114157808	ACAG	ATT	300	PASS	FOXP2	CCDS43635.1	r.?	-	-	Complex	intronic	DI	114157809	114157811	3	12	0	-	-	0	1	1	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	FOXP2|CCDS43635.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	2	3	0	0	19	22	19	22	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736974692	7	119217050	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	119217050	119217060	1	28	480.015	-	-	9	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	6	3	7	4	27	27	27	27	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736976684	7	126738679	C	CA	300	PASS	GRM8	CCDS5794.1	r.?	-	-	Ins	intronic	I	126738679	126738686	1	10	266.675	-	-	6	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	4	1	4	2	29	18	29	18	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736982763	7	142595397	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	142595397	142595406	1	15	320.01	-	-	8	1	1	-	-	./.	0	0	0	0	16	21	16	21	0	0	./.	4	2	4	2	30	25	31	25	4	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736983556	7	145491470	ATTGTTTAAT	A	319	PASS	-	-	-	-	-	Del	-	D	145491470	145491481	9	42	590.298	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	6	5	6	5	30	22	30	22	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736985550	7	150822338	GA	G	300	PASS	AGAP3	CCDS43681.1	r.?	-	-	Del	intronic	D	150822338	150822343	1	12	269.686	-	-	4	1	1	AGAP3|CCDS43681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGAP3|CCDS43681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	6	6	21	26	21	26	6	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736985551	7	150822394	AG	A	360	PASS	AGAP3	CCDS43681.1	r.?	-	-	Del	intronic	D	150822394	150822399	1	16	323.021	-	-	4	1	1	AGAP3|CCDS43681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGAP3|CCDS43681.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	10	18	10	0	0	./.	3	3	7	3	26	15	26	15	7	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736986038	7	152087155	G	GA	259	PASS	BAGE3	CCDS5931.1	r.?	-	-	Ins	intronic	I	152087155	152087158	1	8	372.743	-	-	2	1	1	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAGE3|CCDS5931.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	8	19	8	0	0	./.	7	0	9	0	42	10	42	10	9	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736988739	8	997715	C	CT	300	PASS	C8orf68	ENST00000450568	r.?	-	-	Ins	intronic	I	997715	997725	1	12	264.911	-	-	9	1	1	C8orf68|ENST00000450568|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf68|ENST00000450568|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	16	7	16	0	0	./.	3	2	3	2	19	18	19	19	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736994267	8	17328583	AGG	A	300	PASS	-	-	-	-	-	Del	-	D	17328583	17328587	2	10	269.727	-	-	3	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	1	4	2	5	13	12	13	12	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736997467	8	27636048	AAATT	A	327	PASS	ESCO2	CCDS34872.1	r.?	-	-	Del	intronic	D	27636048	27636055	4	20	377.016	-	-	1	1	1	ESCO2|CCDS34872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESCO2|CCDS34872.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	19	17	19	0	0	./.	3	4	5	5	26	19	26	19	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2736998819	8	31388680	GT	G	300	PASS	-	-	-	-	-	Del	-	D	31388680	31388688	1	12	268.523	-	-	7	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	2	3	2	3	17	15	17	15	2	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737000103	8	35795867	AG	A	514	PASS	-	-	-	-	-	Del	-	D	35795867	35795870	1	32	538.25	-	-	2	1	1	-	-	./.	0	0	0	0	12	18	12	18	0	0	./.	3	7	4	8	23	29	23	29	4	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737000261	8	36713192	G	GA	300	PASS	KCNU1	ENST00000399881	r.?	-	-	Ins	intronic	I	36713192	36713202	1	12	266.717	-	-	9	1	1	KCNU1|ENST00000399881|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNU1|ENST00000399881|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	10	28	10	0	0	./.	3	2	5	2	40	21	40	21	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737012270	8	73246109	GCA	G	329	PASS	-	-	-	-	-	Del	-	D	73246109	73246123	2	15	322.469	-	-	6	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	4	2	3	33	45	33	45	2	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737012721	8	74355419	G	GA	300	PASS	STAU2	ENST00000343268	r.?	-	-	Ins	intronic	I	74355419	74355428	1	12	265.513	-	-	8	1	1	STAU2|ENST00000343268|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STAU2|ENST00000343268|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	3	2	3	4	37	45	37	46	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737013318	8	75711583	A	ATCATTTATTTTCCTAAG	261	PASS	-	-	-	-	-	Ins	-	I	75711583	75711610	17	30	391.588	-	-	1	1	1	-	-	./.	0	0	0	0	28	15	28	15	0	0	./.	4	5	1	2	33	40	40	43	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737013319	8	75711659	TAGAATCTACATAAAAACAACTCACGAATTAATTTGACATATCTAAGTGGCTGCAGTAAGCTTGATTATGTTAATCTCTTGCTAGTGAACTTTTTTGAGGTACATTTGGTGTCCTGGCCATTGTGTTTGTCTTGTAGATACTCATCTTACTACTCTTTTCGCTTCTGTCAAACAGAATGACCAAATCTTGGAAAGACCTGAGG	T	290	PASS	-	-	-	-	-	Del	-	D	75711659	75711866	202	35	539.455	-	-	1	1	1	-	-	./.	0	0	0	0	17	14	17	14	0	0	./.	4	6	0	0	39	25	43	31	4	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737014004	8	77659654	CT	C	420	PASS	ZFHX4	CCDS47878.1	r.?	-	-	Del	intronic	D	77659654	77659657	1	18	377.618	-	-	2	1	1	ZFHX4|CCDS47878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZFHX4|CCDS47878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	21	16	21	0	0	./.	5	2	7	4	43	41	43	41	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737014853	8	79965937	G	GTA	300	PASS	-	-	-	-	-	Ins	-	I	79965937	79965950	2	10	263.707	-	-	6	1	-	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	3	4	21	42	21	43	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737016974	8	85453134	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	85453134	85453143	1	10	265.513	-	-	8	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	1	5	2	52	43	52	43	5	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737017280	8	86406676	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	86406676	86406685	1	12	266.115	-	-	8	1	1	-	-	./.	0	0	0	0	14	8	15	8	0	0	./.	3	2	3	4	35	33	35	33	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737021775	8	97750635	G	GT	272	PASS	ENSG00000104324	CCDS6273.1	r.?	-	-	Ins	intronic	I	97750635	97750645	1	12	264.911	-	-	9	1	1	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ENSG00000104324|CCDS6273.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	18	11	18	0	0	./.	3	2	3	2	39	47	39	47	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737022621	8	99499081	G	GAGGTGA	261	PASS	ENSG00000104375	CCDS47900.1	r.?	-	-	Ins	intronic	I	99499081	99499084	6	28	449.386	-	-	0	1	1	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000104375|CCDS47900.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	24	12	24	0	0	./.	6	3	6	5	39	33	39	33	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737025205	8	105642560	TA	T	508	PASS	-	-	-	-	-	Del	-	D	105642560	105642564	1	35	537.648	-	-	3	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	4	6	9	10	36	26	36	26	9	10	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737026353	8	108666939	TAGGTTGC	T	348	PASS	-	-	-	-	-	Del	-	D	108666939	108666951	7	48	646.743	-	-	1	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	5	7	6	8	41	44	41	44	6	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737026501	8	109192515	TTTCAGAAGCCCACAGAGAAGAAAATCAATCATAAATCTTCTAAAGAGAAAAATCAGTTCATGTACAAAGGAATAGGAATCTGATATTTCTCAGGAAAAA	T	261	PASS	-	-	-	-	-	Del	-	D	109192515	109192619	99	28	483.703	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	6	0	0	25	35	28	41	3	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737026940	8	110921963	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	110921963	110921972	1	12	266.717	-	-	8	1	1	-	-	./.	0	0	0	0	15	15	16	15	0	0	./.	3	2	3	7	44	57	47	57	3	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737027290	8	111998481	AT	A	628	PASS	-	-	-	-	-	Del	-	D	111998481	111998485	1	104	1024.96	-	-	3	1	1	-	-	./.	0	0	0	0	15	9	15	10	0	0	./.	12	7	27	15	44	27	44	29	27	15	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737027774	8	113061424	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	113061424	113061431	1	15	320.06	-	-	6	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	4	2	4	3	53	56	54	56	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737028423	8	114786437	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	114786437	114786444	1	25	426.747	-	-	6	1	1	-	-	./.	0	0	0	0	18	21	18	21	0	0	./.	4	4	5	6	55	61	55	61	5	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737030073	8	118412074	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	118412074	118412084	1	16	320.06	-	-	9	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	3	4	3	61	49	61	50	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737030084	8	118460881	CTAAGGAAATTT	C	290	PASS	-	-	-	-	-	Del	-	D	118460881	118460894	11	36	538.25	-	-	1	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	5	5	6	5	48	37	48	37	6	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737031384	8	121085522	CGAGCT	C	538	PASS	-	-	-	-	-	Del	-	D	121085522	121085531	5	35	538.853	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	6	4	7	4	61	42	61	42	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737031943	8	122373347	A	AACTTTTAT	290	PASS	-	-	-	-	-	Ins	-	I	122373347	122373352	8	35	491.29	-	-	0	1	1	-	-	./.	0	0	0	0	20	13	21	13	0	0	./.	4	6	4	6	62	49	63	49	4	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737031986	8	122446778	AGCC	ATT	358	PASS	-	-	-	-	-	Complex	-	DI	122446779	122446781	3	14	0	-	-	0	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	1	6	0	0	29	64	29	64	1	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737033755	8	125861727	C	CT	360	PASS	ENSG00000235517	ENST00000422573	r.?	-	-	Ins	intronic	I	125861727	125861737	1	15	315.846	-	-	9	1	1	ENSG00000235517|ENST00000422573|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000235517|ENST00000422573|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	20	15	20	0	0	./.	2	4	8	7	65	47	65	47	8	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737034426	8	127321225	GTGGCTAGGCAAAGGATAGGGTCCAGGTACTTACCC	G	261	PASS	-	-	-	-	-	Del	-	D	127321225	127321263	35	28	485.509	-	-	1	1	1	-	-	./.	0	0	0	0	9	21	9	21	0	0	./.	6	3	6	2	44	25	44	26	6	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737034615	8	127717763	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	127717763	127717771	1	12	320.06	-	-	7	1	1	-	-	./.	0	0	0	0	18	15	18	15	0	0	./.	1	5	3	7	54	56	55	57	3	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737034999	8	128528367	CGAA	C	720	PASS	-	-	-	-	-	Del	-	D	128528367	128528379	3	40	646.141	-	-	3	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	9	3	10	4	53	44	53	44	10	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737035219	8	128883205	GCCT	G	360	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128883205	128883225	3	12	323.673	-	-	6	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	9	24	9	0	0	./.	5	1	5	1	59	49	59	49	5	1	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737035819	8	130285634	AT	A	780	PASS	-	-	-	-	-	Del	-	D	130285634	130285636	1	56	700.087	-	-	1	1	1	-	-	./.	0	0	0	0	21	14	21	14	0	0	./.	7	6	11	7	70	43	70	43	11	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737036073	8	130862590	G	GA	360	PASS	FAM49B	CCDS6361.1	r.?	-	-	Ins	intronic	I	130862590	130862600	1	15	320.06	-	-	9	1	1	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM49B|CCDS6361.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	15	22	15	0	0	./.	4	2	5	4	69	83	69	83	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737036685	8	132164134	GAAGATATTCAGAGCTCTGCTCCAGCCCATTTTCACAGGAAAGCTGCTCTCTCCTCCGAAAGACCACATGCAAACTTAAACCTTGGAAATAATTGGAAAAAATAATTTTAAAAGGCAACTACCATACAGA	G	348	PASS	-	-	-	-	-	Del	-	D	132164134	132164266	129	45	646.141	-	-	1	1	1	-	-	./.	0	0	0	0	13	16	13	16	0	0	./.	4	8	0	0	53	35	57	43	4	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737037950	8	135228235	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	135228235	135228245	1	12	264.911	-	-	9	1	1	-	-	./.	0	0	0	0	18	17	18	17	0	0	./.	2	3	3	3	48	69	49	71	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038006	8	135374284	TCTGAACGTCAAGAGCTAAAGA	T	1119	PASS	-	-	-	-	-	Del	-	D	135374284	135374306	21	414	2102.67	-	-	1	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	22	17	20	16	43	33	45	34	22	17	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038209	8	135961376	TCTCTAC	T	348	PASS	-	-	-	-	-	Del	-	D	135961376	135961386	6	48	636.508	-	-	1	1	1	-	-	./.	0	0	0	0	8	22	8	22	0	0	./.	5	7	5	8	44	47	44	47	5	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038259	8	136086280	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	136086280	136086287	1	12	264.911	-	-	6	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	2	3	3	4	43	54	43	56	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038351	8	136324721	CT	C	300	PASS	-	-	-	-	-	Del	-	D	136324721	136324725	1	12	269.727	-	-	3	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	3	3	3	65	43	65	43	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038355	8	136346925	AGGCCCTTTGTGCTTTGGAGAAGCCCAG	A	377	PASS	-	-	-	-	-	Del	-	D	136346925	136346954	27	54	695.872	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	8	5	5	5	41	62	43	62	8	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038642	8	137101288	ATTTCTACAGCCGG	A	348	PASS	-	-	-	-	-	Del	-	D	137101288	137101305	13	49	647.346	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	6	0	0	62	39	62	39	6	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737038723	8	137282736	TG	T	420	PASS	-	-	-	-	-	Del	-	D	137282736	137282740	1	20	376.414	-	-	3	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	4	3	5	7	44	40	44	40	5	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737039260	8	138487897	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	138487897	138487907	1	12	263.707	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	3	5	50	48	50	48	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737040245	8	140725872	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	140725872	140725878	1	7	318.254	-	-	5	1	1	-	-	./.	0	0	0	0	23	11	24	11	0	0	./.	0	6	1	0	62	46	64	47	1	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737041192	8	142745389	CATCTA	C	294	PASS	-	-	-	-	-	Del	-	D	142745389	142745398	5	16	431.564	-	-	1	1	1	-	-	./.	0	0	0	0	3	7	3	7	0	0	./.	1	7	1	8	37	46	37	46	1	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737041482	8	143776733	AT	A	360	PASS	LY6K	CCDS6385.1	r.?	-	-	Del	upstream	D	143776733	143776735	1	7	312.836	-	-	1	1	1	LY6K|CCDS6385.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000232495|ENST00000426305|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	6	0	11	0	49	45	49	45	11	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737042417	8	145969268	A	AT	360	PASS	ZNF251	CCDS47944.1	r.?	-	-	Ins	intronic	I	145969268	145969275	1	12	320.06	-	-	6	1	1	ZNF251|CCDS47944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF251|CCDS47944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	1	5	2	6	39	59	39	59	2	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737043605	9	3189836	ATT	A	300	PASS	-	-	-	-	-	Del	-	D	3189836	3189839	2	12	270.657	-	-	2	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	2	3	3	3	14	13	14	13	3	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737043980	9	4513026	G	GA	300	PASS	SLC1A1	CCDS6452.1	r.?	-	-	Ins	intronic	I	4513026	4513036	1	12	264.035	-	-	9	1	1	SLC1A1|CCDS6452.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC1A1|CCDS6452.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	16	18	16	0	0	./.	3	2	3	4	23	16	23	16	3	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737049166	9	21766972	GC	G	420	PASS	-	-	-	-	-	Del	-	D	21766972	21766975	1	20	375.91	-	-	2	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	3	4	4	4	25	21	25	21	4	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737049984	9	25457985	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	25457985	25457993	1	18	374.706	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	13	15	0	0	./.	2	5	3	5	19	20	20	20	3	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737051322	9	30357525	CTCATT	C	569	PASS	-	-	-	-	-	Del	-	D	30357525	30357533	5	27	540.11	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	8	2	8	20	31	20	31	2	8	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737059182	9	72972878	AT	A	420	PASS	SMC5	CCDS6632.1	r.?	-	-	Del	downstream	D	72972878	72972881	1	14	378.92	-	-	2	1	1	SMC5|CCDS6632.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SMC5|CCDS6632.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	19	15	19	0	0	./.	1	6	2	7	19	20	19	20	2	7	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737065499	9	92217672	CG	C	360	PASS	GADD45G	CCDS6686.1	r.?	-	-	Del	upstream	D	92217672	92217676	1	15	324.789	-	-	3	1	1	GADD45G|CCDS6686.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GADD45G|CCDS6686.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	13	7	13	7	0	0	./.	4	2	4	3	17	7	17	7	4	3	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737065866	9	93665422	GCC	G	569	PASS	SYK	CCDS6688.1	r.?	-	-	Del	downstream	D	93665422	93665428	2	32	540.11	-	-	5	1	1	SYK|CCDS6688.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SYK|CCDS6688.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	18	13	18	13	0	0	./.	7	3	7	4	31	19	31	19	7	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737070192	9	109257598	ATAGTTTCT	AGC	290	PASS	-	-	-	-	-	Complex	-	DI	109257599	109257606	8	35	0	-	-	0	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	4	6	0	0	22	20	22	20	4	6	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737071739	9	114047527	CACTT	C	300	PASS	-	-	-	-	-	Del	-	D	114047527	114047535	4	12	270.657	-	-	1	1	1	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	3	2	3	2	18	14	18	14	3	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737074277	9	121945405	TA	T	300	PASS	DBC1	CCDS6822.1	r.?	-	-	Del	intronic	D	121945405	121945408	1	10	270.657	-	-	2	1	1	DBC1|CCDS6822.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DBC1|CCDS6822.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	2	5	15	24	15	24	2	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737074928	9	124307969	TG	T	660	PASS	-	-	-	-	-	Del	-	D	124307969	124307975	1	40	594.242	-	-	5	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	7	4	7	5	19	24	19	24	7	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737075665	9	126931648	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	126931648	126931656	1	16	321.176	-	-	7	1	1	-	-	./.	0	0	0	0	15	25	17	25	0	0	./.	3	3	5	4	18	27	18	27	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737076317	9	128721163	C	CCT	480	PASS	PBX3	CCDS6865.1	r.?	-	-	Ins	intronic	I	128721163	128721178	2	24	422.817	-	-	7	1	-	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX3|CCDS6865.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	12	17	13	0	0	./.	5	3	6	4	22	19	22	19	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737086826	X	45141087	TAA	T	420	PASS	-	-	-	-	-	Del	-	D	45141087	45141095	2	18	380.641	-	-	7	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	2	6	2	16	20	16	20	6	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737091725	X	84748626	CA	C	540	PASS	-	-	-	-	-	Del	-	D	84748626	84748628	1	28	488.794	-	-	1	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	6	3	6	4	11	12	11	12	6	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737092946	X	92649966	C	CTTT	327	PASS	-	-	-	-	-	Ins	-	I	92649966	92649976	3	14	367.396	-	-	9	1	1	-	-	./.	0	0	0	0	10	8	10	9	0	0	./.	6	1	7	2	16	11	17	11	7	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737094793	X	106199945	CAG	C	300	PASS	MORC4	CCDS14525.2	r.?	-	-	Del	intronic	D	106199945	106199964	2	6	268.876	-	-	9	1	-	MORC4|CCDS14525.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MORC4|CCDS14525.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	0	5	0	5	14	14	14	14	0	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737095946	X	115972286	AGCCATCAAGTTTCAGGTTTATGCAAG	A	261	PASS	-	-	-	-	-	Del	-	D	115972286	115972316	26	30	479.161	-	-	1	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	4	5	3	5	5	7	6	7	4	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737098991	X	133345249	AG	A	420	PASS	-	-	-	-	-	Del	-	D	133345249	133345255	1	14	380.641	-	-	5	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	6	1	6	2	23	25	23	25	6	2	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737099908	X	138626712	AATAG	A	507	PASS	F9	CCDS14666.1	r.?	-	-	Del	intronic	D	138626712	138626718	4	36	543.773	-	-	1	1	1	F9|CCDS14666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	F9|CCDS14666.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	5	5	5	5	20	18	20	18	5	5	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737100104	X	139784726	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	139784726	139784736	1	6	265.866	-	-	9	1	-	-	-	./.	0	0	0	0	10	16	10	16	0	0	./.	5	0	7	0	31	16	31	17	7	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737103903	Y	13274030	AC	A	607	PASS	-	-	-	-	-	Del	-	D	13274030	13274032	1	21	1098.05	-	-	1	1	1	-	-	./.	0	0	0	0	49	27	49	27	0	0	./.	20	0	24	0	229	81	229	81	24	0	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737105247	Y	17248817	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	17248817	17248826	1	16	325.201	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	3	3	5	4	20	13	20	14	5	4	1	1	1	1	1	1	1	1
2725046	PD20344a	PD20344b	2737105369	Y	19060750	ATACT	A	569	PASS	-	-	-	-	-	Del	-	D	19060750	19060757	4	32	544.812	-	-	1	1	1	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	7	3	7	5	12	12	12	12	7	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738861774	1	16979401	T	TAA	471	PASS	AL355149.1	ENST00000515775	r.?	-	-	Ins	intronic	I	16979401	16979409	2	16	786.209	-	-	7	1	1	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AL355149.1|ENST00000515775|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	15	0	19	0	93	52	93	53	19	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738868133	1	31627988	G	GCGGGGA	290	PASS	-	-	-	-	-	Ins	-	I	31627988	31627994	6	27	498.251	-	-	0	1	1	-	-	./.	0	0	0	0	2	10	2	10	0	0	./.	8	2	8	2	18	8	18	11	8	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738872499	1	42759243	CA	C	300	PASS	FOXJ3	CCDS30689.1	r.?	-	-	Del	intronic	D	42759243	42759253	1	12	266.886	-	-	9	1	1	FOXJ3|CCDS30689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXJ3|CCDS30689.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	3	2	36	35	36	35	3	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738872934	1	43917991	CTG	C	509	PASS	KIAA0467	CCDS30694.1	r.9905_9906delUG	c.?	p.?	Del	3'UTR variant	D	43917991	43917996	2	30	466.789	-	-	2	1	1	KIAA0467|CCDS30694.1|r.9905_9906delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	HYI|ENST00000372427|r.1588_1589delCA|c.108_109delCA|p.H36fs*14|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	13	12	13	12	0	0	./.	5	4	6	5	31	20	31	20	6	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738881487	1	68289245	G	GT	509	PASS	GNG12	CCDS30749.1	r.?	-	-	Ins	intronic	I	68289245	68289247	1	30	475.218	-	-	1	1	1	GNG12|CCDS30749.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	GNG12|CCDS30749.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	5	4	7	9	26	33	27	33	7	9	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738888610	1	89732535	AAT	A	420	PASS	GBP5	CCDS722.1	r.?	-	-	Del	intronic	D	89732535	89732551	2	20	375.567	-	-	7	1	1	GBP5|CCDS722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GBP5|CCDS722.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	4	3	4	32	24	32	24	3	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738890352	1	94282841	C	CG	480	PASS	BCAR3	CCDS745.1	r.?	-	-	Ins	intronic	I	94282841	94282848	1	25	425.092	-	-	6	1	1	BCAR3|CCDS745.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	BCAR3|CCDS745.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	4	4	4	5	30	32	31	33	4	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738893613	1	103568277	A	AT	300	PASS	COL11A1	CCDS779.1	r.?	-	-	Ins	intronic	I	103568277	103568284	1	10	265.682	-	-	6	1	1	COL11A1|CCDS779.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL11A1|CCDS779.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	4	1	4	2	30	15	30	15	4	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738896566	1	112143812	CT	C	300	PASS	RAP1A	CCDS840.1	r.?	-	-	Del	intronic	D	112143812	112143815	1	12	268.693	-	-	2	1	1	RAP1A|CCDS840.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAP1A|CCDS840.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	12	17	12	0	0	./.	2	3	2	4	30	28	30	28	2	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738903277	1	147788655	GT	G	420	PASS	-	-	-	-	-	Del	-	D	147788655	147788659	1	14	376.169	-	-	3	1	1	-	-	./.	0	0	0	0	19	8	19	8	0	0	./.	6	1	9	4	31	22	31	22	9	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738903406	1	148537493	TG	T	370	PASS	-	-	-	-	-	Del	-	D	148537493	148537495	1	11	536.181	-	-	1	1	1	-	-	./.	0	0	0	0	25	16	25	16	0	0	./.	10	0	11	0	73	32	73	32	11	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738903805	1	149033184	ATTCCATTTGT	A	281	PASS	-	-	-	-	-	Del	-	D	149033184	149033202	10	36	588.113	-	-	1	1	1	-	-	./.	0	0	0	0	24	32	24	32	0	0	./.	3	8	3	10	79	120	79	120	3	10	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738913428	1	174628950	G	GT	300	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Ins	intronic	I	174628950	174628960	1	12	265.08	-	-	9	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	21	22	21	0	0	./.	2	3	2	3	30	29	30	29	2	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738921163	1	196378350	CT	C	420	PASS	KCNT2	CCDS1384.1	r.?	-	-	Del	intronic	D	196378350	196378353	1	20	372.557	-	-	2	1	1	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNT2|CCDS1384.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	3	5	6	20	29	20	29	5	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738922000	1	199130164	GGAAGGAA	G	329	PASS	-	-	-	-	-	Del	-	D	199130164	199130180	7	7	322.431	-	-	2	1	-	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	6	0	1	0	42	21	42	21	6	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738937209	1	239416610	TACTC	T	658	PASS	-	-	-	-	-	Del	-	D	239416610	239416617	4	45	644.26	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	4	8	4	9	22	27	22	27	4	9	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738961002	10	47140173	T	TG	360	PASS	-	-	-	-	-	Ins	-	I	47140173	47140175	1	15	319.212	-	-	1	1	1	-	-	./.	0	0	0	0	26	23	26	23	0	0	./.	2	4	5	5	44	56	44	57	5	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738972076	10	77134640	TA	T	480	PASS	-	-	-	-	-	Del	-	D	77134640	77134645	1	21	430.634	-	-	4	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	6	2	7	4	31	22	31	22	7	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738972603	10	78828353	G	GA	360	PASS	KCNMA1	CCDS7352.1	r.?	-	-	Ins	intronic	I	78828353	78828363	1	15	319.815	-	-	9	1	1	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	13	17	13	0	0	./.	4	2	4	3	39	42	39	42	4	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738978577	10	96755180	CT	C	540	PASS	-	-	-	-	-	Del	-	D	96755180	96755186	1	28	485.14	-	-	5	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	5	10	35	30	35	30	5	10	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738980458	10	101294476	CT	C	480	PASS	NKX2-3	CCDS41558.1	r.?	-	-	Del	intronic	D	101294476	101294479	1	25	430.032	-	-	2	1	1	NKX2-3|CCDS41558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKX2-3|CCDS41558.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	4	4	7	5	36	31	36	31	7	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2738988470	10	122731175	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	122731175	122731194	2	12	267.716	-	-	9	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	2	3	1	3	36	33	36	33	2	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739011721	11	48639829	TG	T	540	PASS	-	-	-	-	-	Del	-	D	48639829	48639831	1	30	484.278	-	-	1	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	4	5	4	17	19	17	19	5	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739012997	11	55858654	CT	C	480	PASS	OR8I2	CCDS31517.1	r.?	-	-	Del	upstream	D	55858654	55858658	1	9	432.075	-	-	3	1	1	OR8I2|CCDS31517.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	OR8I2|CCDS31517.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	22	16	22	16	0	0	./.	0	8	2	11	24	37	24	37	2	11	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739025810	11	90161839	CAT	C	360	PASS	-	-	-	-	-	Del	-	D	90161839	90161844	2	16	324.056	-	-	2	1	-	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	3	3	5	7	25	26	25	26	5	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739033532	11	111873882	T	TC	720	PASS	DIXDC1	ENST00000389821	r.?	-	-	Ins	intronic	I	111873882	111873884	1	33	639.684	-	-	1	1	1	DIXDC1|ENST00000389821|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	DIXDC1|ENST00000389821|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	14	8	14	0	0	./.	2	10	4	10	21	24	21	24	4	10	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739040780	11	131827372	A	AT	360	PASS	OPCML	CCDS8491.1	r.?	-	-	Ins	intronic	I	131827372	131827378	1	15	319.24	-	-	5	1	1	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OPCML|CCDS8491.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	4	2	8	2	35	19	35	19	8	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739054113	12	31262430	CACAA	C	349	PASS	DDX11	CCDS41767.1	r.?	-	-	Del	downstream	D	31262430	31262438	4	12	594.229	-	-	1	1	1	DDX11|CCDS41767.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DDX11|CCDS41767.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	4	14	4	0	0	./.	11	0	14	0	33	26	33	26	14	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739064115	12	61775810	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	61775810	61775820	1	15	316.298	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	2	4	2	4	32	26	34	26	2	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739067262	12	70392372	ATG	A	360	PASS	-	-	-	-	-	Del	-	D	70392372	70392392	2	15	324.125	-	-	9	1	-	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	2	4	2	6	32	26	32	26	2	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739076989	12	99958679	CT	C	360	PASS	ANKS1B	ENST00000329257	r.?	-	-	Del	intronic	D	99958679	99958682	1	15	323.523	-	-	2	1	1	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKS1B|ENST00000329257|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	4	2	4	5	11	29	11	29	4	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739083027	12	116567292	G	GT	300	PASS	MED13L	CCDS9177.1	r.?	-	-	Ins	intronic	I	116567292	116567294	1	12	266.492	-	-	1	1	1	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MED13L|CCDS9177.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	6	7	41	33	43	34	6	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739089099	12	129654512	AT	A	600	PASS	TMEM132D	CCDS9266.1	r.?	-	-	Del	intronic	D	129654512	129654516	1	35	540.208	-	-	3	1	1	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM132D|CCDS9266.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	4	6	7	6	38	37	38	37	7	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739090732	12	133564990	T	TA	300	PASS	ZNF26	CCDS31939.1	r.?	-	-	Ins	intronic	I	133564990	133564996	1	12	262.879	-	-	5	1	1	ZNF26|CCDS31939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZNF26|CCDS31939.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	2	3	2	5	32	32	32	32	2	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739091473	13	20054887	G	GA	266	PASS	TPTE2	CCDS45014.1	r.?	-	-	Ins	intronic	I	20054887	20054888	1	11	535.368	-	-	0	1	1	TPTE2|CCDS45014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TPTE2|CCDS45014.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	10	0	13	0	44	28	44	28	13	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739095215	13	27743512	TACAAAGCCAAA	T	261	PASS	USP12	CCDS31952.1	r.?	-	-	Del	intronic	D	27743512	27743524	11	24	486.648	-	-	1	1	1	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USP12|CCDS31952.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	2	7	2	6	21	36	21	37	2	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739101521	13	44393766	GATAA	G	275	PASS	-	-	-	-	-	Del	-	D	44393766	44393774	4	12	324.231	-	-	1	1	1	-	-	./.	0	0	0	0	5	20	5	20	0	0	./.	5	1	4	1	20	27	21	27	5	1	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739110706	13	70429536	A	AGATACAGATAGAGATAGAGACAGAGATAGAGATAGACAGT	319	PASS	KLHL1	CCDS9445.1	r.?	-	-	Ins	intronic	I	70429536	70429571	40	42	330.621	-	-	0	1	-	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	6	5	0	0	28	40	30	43	6	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739124842	13	109267918	GA	G	600	PASS	MYO16	CCDS32008.1	r.?	-	-	Del	intronic	D	109267918	109267922	1	27	541.388	-	-	3	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	20	16	20	0	0	./.	8	2	11	3	32	20	32	20	11	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739127112	14	19068958	A	AT	261	PASS	-	-	-	-	-	Ins	-	I	19068958	19068965	1	10	482.308	-	-	6	1	1	-	-	./.	0	0	0	0	28	23	28	24	0	0	./.	9	0	5	0	58	56	59	56	10	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739134009	14	36939928	AC	A	300	PASS	SFTA3	CCDS45097.1	r.?	-	-	Del	downstream	D	36939928	36939930	1	6	263.133	-	-	1	1	1	SFTA3|CCDS45097.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SFTA3|CCDS45097.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	13	14	13	0	0	./.	5	0	6	0	32	30	32	30	6	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739138211	14	49426354	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	49426354	49426355	1	10	266.745	-	-	0	1	1	-	-	./.	0	0	0	0	12	16	12	17	0	0	./.	1	4	1	5	20	26	20	26	1	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739156611	14	98290255	G	GA	540	PASS	-	-	-	-	-	Ins	-	I	98290255	98290264	1	30	481.706	-	-	8	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	5	4	8	5	41	38	42	38	8	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739160464	15	20121011	CA	C	376	PASS	-	-	-	-	-	Del	-	D	20121011	20121015	1	77	866.721	-	-	3	1	1	-	-	./.	0	0	0	0	38	68	38	68	0	0	./.	6	10	7	12	188	214	188	216	7	12	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739168576	15	40299423	CA	C	480	PASS	EIF2AK4	CCDS42016.1	r.?	-	-	Del	intronic	D	40299423	40299425	1	25	433.661	-	-	1	1	1	EIF2AK4|CCDS42016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EIF2AK4|CCDS42016.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	22	18	22	0	0	./.	4	4	5	7	27	31	27	31	5	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739171635	15	47616584	ATCTTT	A	478	PASS	-	-	-	-	-	Del	-	D	47616584	47616591	5	28	485.461	-	-	1	1	1	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	3	6	3	6	9	35	9	35	3	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739173350	15	52463738	AG	A	420	PASS	GNB5	CCDS10149.1	r.?	-	-	Del	intronic	D	52463738	52463741	1	20	379.454	-	-	2	1	1	GNB5|CCDS10149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNB5|CCDS10149.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	17	16	17	0	0	./.	3	4	4	6	20	18	20	18	4	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739174261	15	55135208	CT	C	420	PASS	-	-	-	-	-	Del	-	D	55135208	55135211	1	20	379.454	-	-	2	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	4	8	6	41	32	41	32	8	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739186230	15	85958379	T	TA	300	PASS	AKAP13	CCDS32320.1	r.?	-	-	Ins	intronic	I	85958379	85958389	1	6	268.028	-	-	9	1	1	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	AKAP13|CCDS32320.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	15	16	15	0	0	./.	0	5	1	6	27	30	27	31	1	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739203837	16	26212334	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	26212334	26212351	2	10	270.781	-	-	8	1	-	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	4	1	4	2	33	25	33	25	4	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739206332	16	32334750	AAAG	A	387	PASS	-	-	-	-	-	Del	-	D	32334750	32334754	3	14	704.03	-	-	1	1	1	-	-	./.	0	0	0	0	14	15	14	15	0	0	./.	13	0	28	0	72	24	72	24	28	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739211391	16	53789539	C	CT	660	PASS	FTO	CCDS32448.1	r.?	-	-	Ins	intronic	I	53789539	53789543	1	42	587.288	-	-	3	1	1	FTO|CCDS32448.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FTO|CCDS32448.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	12	18	12	0	0	./.	6	5	9	8	35	28	35	28	9	8	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739224715	16	87199888	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	87199888	87199898	1	12	267.77	-	-	9	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	3	2	4	2	39	26	39	26	4	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739236925	17	25268310	GT	G	279	PASS	-	-	-	-	-	Del	-	D	25268310	25268317	1	28	487.445	-	-	6	1	1	-	-	./.	0	0	0	0	26	32	26	32	0	0	./.	6	3	8	3	97	93	97	93	8	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739240812	17	34490370	CT	C	464	PASS	TBC1D3B	CCDS42300.1	r.?	-	-	Del	downstream	D	34490370	34490374	1	17	864.762	-	-	3	1	1	TBC1D3B|CCDS42300.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TBC1D3B|CCDS42300.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	5	5	5	0	0	./.	16	0	18	0	41	16	41	16	18	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739253545	17	64390190	CA	C	540	PASS	PRKCA	CCDS11664.1	r.?	-	-	Del	intronic	D	64390190	64390200	1	24	486.843	-	-	9	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	6	17	6	0	0	./.	7	2	9	2	25	21	25	21	9	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739261742	18	881421	CT	C	660	PASS	-	-	-	-	-	Del	-	D	881421	881424	1	36	595.734	-	-	2	1	1	-	-	./.	0	0	0	0	13	17	21	17	0	0	./.	3	8	4	8	32	29	42	29	4	8	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739280654	18	56195187	CT	C	300	PASS	ALPK2	CCDS11966.2	r.?	-	-	Del	intronic	D	56195187	56195193	1	12	268.052	-	-	5	1	1	ALPK2|CCDS11966.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ALPK2|CCDS11966.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	17	20	17	0	0	./.	2	3	4	4	31	22	31	22	4	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739281795	18	59302164	CA	C	646	PASS	-	-	-	-	-	Del	-	D	59302164	59302172	1	40	594.53	-	-	7	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	7	7	13	23	31	23	31	7	13	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739300365	19	21533257	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	21533257	21533267	1	12	321.699	-	-	9	1	1	-	-	./.	0	0	0	0	18	14	19	14	0	0	./.	5	1	6	1	39	31	39	31	6	1	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739350325	2	95543144	T	TCAGATGGG	261	PASS	TEKT4	CCDS2005.1	r.?	-	-	Ins	downstream	I	95543144	95543158	8	10	438.151	-	-	1	1	1	TEKT4|CCDS2005.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TEKT4|CCDS2005.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	14	17	14	17	0	0	./.	9	0	10	0	45	27	47	27	12	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739356390	2	114341125	TTGCGTCTGGC	T	263	PASS	MIR1302-3	ENST00000408128	r.?	-	-	Del	upstream	D	114341125	114341137	10	12	591.443	-	-	1	1	1	MIR1302-3|ENST00000408128|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR1302-3|ENST00000408128|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	21	27	21	27	0	0	./.	11	0	11	0	62	42	62	42	11	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739362511	2	132262075	C	CA	325	PASS	-	-	-	-	-	Ins	-	I	132262075	132262077	1	24	425.324	-	-	1	1	1	-	-	./.	0	0	0	0	3	14	3	14	0	0	./.	3	5	4	7	31	24	31	24	4	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739367126	2	143683994	TA	T	300	PASS	KYNU	CCDS2183.1	r.?	-	-	Del	intronic	D	143683994	143684004	1	12	268.838	-	-	9	1	1	KYNU|CCDS2183.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KYNU|CCDS2183.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	12	19	12	0	0	./.	3	2	3	2	29	23	29	23	3	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739390528	2	212264870	GC	G	540	PASS	ERBB4	CCDS2394.1	r.?	-	-	Del	intronic	D	212264870	212264875	1	28	483.306	-	-	4	1	1	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ERBB4|CCDS2394.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	13	21	13	0	0	./.	3	6	4	9	26	26	26	26	4	9	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739396342	2	228183414	CG	C	300	PASS	COL4A3	CCDS42829.1	r.?	-	-	Del	downstream	D	228183414	228183416	1	12	268.236	-	-	1	1	1	COL4A3|CCDS42829.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	COL4A3|CCDS42829.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	15	12	15	0	0	./.	3	2	4	6	36	43	36	43	4	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739412708	20	29645522	TAATTAGTTC	T	276	PASS	-	-	-	-	-	Del	-	D	29645522	29645535	9	11	543.312	-	-	1	1	1	-	-	./.	0	0	0	0	160	124	160	124	0	0	./.	10	0	15	0	314	249	314	249	15	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739419508	20	48060578	GA	G	360	PASS	KCNB1	CCDS13418.1	r.?	-	-	Del	intronic	D	48060578	48060582	1	15	325.987	-	-	3	1	1	KCNB1|CCDS13418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNB1|CCDS13418.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	2	4	2	6	27	25	27	25	2	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739420935	20	50976604	C	CT	720	PASS	-	-	-	-	-	Ins	-	I	50976604	50976613	1	40	643.545	-	-	8	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	3	9	4	10	20	35	20	35	4	10	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739424633	20	61455603	GTGCGGAGTGGCCTCCTGGGGTCCCGTCACTGA	G	354	PASS	COL9A3	CCDS13505.1	r.?	-	-	Del	intronic	D	61455603	61455659	32	30	458.877	-	-	1	1	1	COL9A3|CCDS13505.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL9A3|CCDS13505.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	4	5	0	0	20	24	20	24	4	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739461064	3	8546403	C	CT	300	PASS	LMCD1	CCDS33688.1	r.?	-	-	Ins	intronic	I	8546403	8546413	1	12	260.929	-	-	9	1	1	LMCD1|CCDS33688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LMCD1|CCDS33688.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	16	12	16	0	0	./.	2	3	2	3	40	37	41	37	2	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739462437	3	11905959	ATGT	A	481	PASS	-	-	-	-	-	Del	-	D	11905959	11905965	3	30	591.984	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	9	2	8	3	38	28	39	28	9	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739466312	3	23556078	T	TTTA	360	PASS	UBE2E2	CCDS2637.1	r.?	-	-	Ins	intronic	I	23556078	23556099	3	15	310.586	-	-	6	1	-	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBE2E2|CCDS2637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	4	2	5	2	24	16	24	17	5	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739475898	3	50671920	TTC	T	300	PASS	MAPKAPK3	CCDS2832.1	r.?	-	-	Del	intronic	D	50671920	50671924	2	10	268.153	-	-	1	1	1	MAPKAPK3|CCDS2832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAPKAPK3|CCDS2832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	1	4	1	5	28	36	28	36	1	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739483925	3	73352581	TA	T	720	PASS	AC103560.1	ENST00000509224	r.?	-	-	Del	intronic	D	73352581	73352585	1	48	644.652	-	-	3	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	18	16	18	0	0	./.	5	7	7	8	30	34	30	34	7	8	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739544780	4	49193631	AAGTT	A	376	PASS	-	-	-	-	-	Del	-	D	49193631	49193636	4	14	699.889	-	-	1	1	1	-	-	./.	0	0	0	0	39	21	39	21	0	0	./.	13	0	15	0	83	62	83	62	15	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739544970	4	49273901	TG	T	276	PASS	-	-	-	-	-	Del	-	D	49273901	49273904	1	10	478.518	-	-	2	1	1	-	-	./.	0	0	0	0	51	49	51	49	0	0	./.	0	9	0	11	124	138	124	138	0	11	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739597689	5	4340421	CT	C	420	PASS	-	-	-	-	-	Del	-	D	4340421	4340428	1	20	373.235	-	-	6	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	3	4	5	6	26	26	26	26	5	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739603722	5	21015900	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	21015900	21015907	1	15	319.916	-	-	6	1	1	-	-	./.	0	0	0	0	9	20	9	20	0	0	./.	2	4	3	5	21	36	21	36	3	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739617605	5	63227729	AT	A	300	PASS	-	-	-	-	-	Del	-	D	63227729	63227732	1	10	267.801	-	-	2	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	1	6	36	29	36	29	1	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739618700	5	66349707	CAT	C	360	PASS	MAST4	CCDS47225.1	r.?	-	-	Del	intronic	D	66349707	66349713	2	12	322.324	-	-	2	1	1	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST4|CCDS47225.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	17	13	17	0	0	./.	5	1	6	2	33	19	33	19	6	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739620862	5	73579765	CT	C	600	PASS	-	-	-	-	-	Del	-	D	73579765	73579768	1	35	539.214	-	-	2	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	4	6	8	7	33	27	33	27	8	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739626918	5	91231942	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	91231942	91231951	1	12	266.597	-	-	8	1	1	-	-	./.	0	0	0	0	11	16	11	16	0	0	./.	3	2	5	3	30	31	30	31	5	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739628577	5	97028937	GA	G	300	PASS	-	-	-	-	-	Del	-	D	97028937	97028939	1	6	268.403	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	0	5	0	35	19	35	19	5	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739629886	5	101070763	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	101070763	101070773	1	12	266.597	-	-	9	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	3	2	3	2	26	18	26	18	3	2	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739640957	5	135065387	GA	G	960	PASS	-	-	-	-	-	Del	-	D	135065387	135065391	1	81	859.732	-	-	3	1	1	-	-	./.	0	0	0	0	17	9	17	9	0	0	./.	8	8	9	8	33	29	33	29	9	8	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739648148	5	156394331	C	CA	509	PASS	TIMD4	CCDS4332.1	r.?	-	-	Ins	upstream	I	156394331	156394338	1	30	479.874	-	-	6	1	-	TIMD4|CCDS4332.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	TIMD4|CCDS4332.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	20	7	20	0	0	./.	4	5	6	6	31	32	31	32	6	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739654634	5	174467324	GT	G	480	PASS	-	-	-	-	-	Del	-	D	174467324	174467328	1	24	431.371	-	-	3	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	5	3	7	4	35	16	35	16	8	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739662987	6	14105306	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	14105306	14105316	1	10	264.766	-	-	9	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	1	4	1	4	40	43	41	43	1	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739664856	6	18392098	CA	C	300	PASS	RNF144B	CCDS34345.1	r.?	-	-	Del	intronic	D	18392098	18392108	1	6	266.572	-	-	9	1	1	RNF144B|CCDS34345.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RNF144B|CCDS34345.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	0	5	0	5	22	43	22	43	0	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739676594	6	45935526	AAG	A	360	PASS	CLIC5	CCDS47438.1	r.?	-	-	Del	intronic	D	45935526	45935545	2	12	323.498	-	-	9	1	1	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CLIC5|CCDS47438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	1	5	1	6	19	30	19	30	1	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739682224	6	63148478	CT	C	600	PASS	-	-	-	-	-	Del	-	D	63148478	63148481	1	32	539.164	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	7	3	8	3	30	20	30	20	8	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739693273	6	96075457	TCA	T	300	PASS	-	-	-	-	-	Del	-	D	96075457	96075476	2	6	269.582	-	-	9	1	1	-	-	./.	0	0	0	0	20	11	20	11	0	0	./.	5	0	5	0	39	26	39	26	5	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739694024	6	98549687	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	98549687	98549697	1	12	265.368	-	-	9	1	1	-	-	./.	0	0	0	0	19	22	19	23	0	0	./.	2	3	2	3	37	45	37	45	2	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739699911	6	114958252	TA	T	480	PASS	-	-	-	-	-	Del	-	D	114958252	114958255	1	21	429.525	-	-	2	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	2	6	2	6	20	30	20	30	2	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739700412	6	116737049	TAACA	T	420	PASS	DSE	CCDS5107.1	r.?	-	-	Del	intronic	D	116737049	116737056	4	20	377.415	-	-	1	1	1	DSE|CCDS5107.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSE|CCDS5107.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	3	4	3	6	26	23	26	23	3	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739708832	6	142052759	CA	C	420	PASS	-	-	-	-	-	Del	-	D	142052759	142052763	1	20	377.415	-	-	3	1	1	-	-	./.	0	0	0	0	8	22	8	22	0	0	./.	3	4	3	7	20	34	20	34	3	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739715439	6	161146340	AT	A	480	PASS	PLG	CCDS5279.1	r.?	-	-	Del	intronic	D	161146340	161146344	1	24	430.127	-	-	3	1	1	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLG|CCDS5279.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	14	19	14	0	0	./.	5	3	5	3	30	27	30	27	5	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739723331	7	10285566	CT	C	420	PASS	-	-	-	-	-	Del	-	D	10285566	10285568	1	20	377.494	-	-	1	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	4	6	5	24	21	24	21	6	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739733854	7	39835678	CAT	C	444	PASS	-	-	-	-	-	Del	-	D	39835678	39835681	2	13	646.53	-	-	1	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	12	0	13	0	35	7	35	7	13	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739738646	7	53173130	AAG	A	420	PASS	-	-	-	-	-	Del	-	D	53173130	53173138	2	20	377.494	-	-	3	1	1	-	-	./.	0	0	0	0	16	8	16	8	0	0	./.	4	3	5	3	26	18	26	18	5	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739759594	7	107734373	G	GA	300	PASS	LAMB4	CCDS34732.1	r.?	-	-	Ins	intronic	I	107734373	107734383	1	12	264.822	-	-	9	1	1	LAMB4|CCDS34732.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LAMB4|CCDS34732.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	2	3	2	3	39	36	39	36	2	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739764726	7	125036993	TA	T	420	PASS	-	-	-	-	-	Del	-	D	125036993	125036997	1	20	375.688	-	-	3	1	1	-	-	./.	0	0	0	0	16	7	16	7	0	0	./.	3	4	6	7	24	29	24	29	6	7	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739766150	7	128825497	TAC	T	300	PASS	SMO	CCDS5811.1	r.?	-	-	Del	upstream	D	128825497	128825515	2	12	268.434	-	-	8	1	-	SMO|CCDS5811.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AC011005.1|ENST00000514496|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	18	18	18	0	0	./.	2	3	2	4	31	29	31	29	2	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739775904	7	153059458	CT	C	540	PASS	-	-	-	-	-	Del	-	D	153059458	153059463	1	28	484.747	-	-	4	1	1	-	-	./.	0	0	0	0	14	18	14	18	0	0	./.	3	6	5	6	23	20	23	20	5	6	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739776337	7	154394086	G	GA	480	PASS	DPP6	ENST00000404039	r.?	-	-	Ins	intronic	I	154394086	154394095	1	24	426.605	-	-	8	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	10	7	10	0	0	./.	3	5	5	5	15	13	15	13	5	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739795707	8	49632928	AG	A	300	PASS	EFCAB1	CCDS6145.1	r.?	-	-	Del	intronic	D	49632928	49632931	1	12	270.051	-	-	2	1	1	EFCAB1|CCDS6145.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	EFCAB1|CCDS6145.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	10	16	10	0	0	./.	3	2	4	4	29	27	29	27	4	4	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739805896	8	81319363	AC	A	300	PASS	-	-	-	-	-	Del	-	D	81319363	81319365	1	10	270.051	-	-	1	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	1	5	1	36	31	36	31	5	1	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739816369	8	114541709	AG	A	600	PASS	-	-	-	-	-	Del	-	D	114541709	114541711	1	35	540.102	-	-	1	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	6	4	7	5	24	23	24	23	7	5	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739818911	8	122827039	GA	G	360	PASS	-	-	-	-	-	Del	-	D	122827039	122827042	1	16	323.459	-	-	2	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	3	3	3	3	25	22	25	22	3	3	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739878351	X	61866836	TC	T	360	PASS	-	-	-	-	-	Del	-	D	61866836	61866838	1	12	325.828	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	1	5	4	10	24	139	24	139	4	10	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739893552	Y	13691738	AAAACGAATGGAATGG	A	394	PASS	-	-	-	-	-	Del	-	D	13691738	13691771	15	15	768.348	-	-	2	1	1	-	-	./.	0	0	0	0	56	55	64	68	0	0	./.	14	0	15	0	262	78	362	79	18	0	1	1	1	1	1	1	1	1
2725440	PD20345a	PD20345b	2739894030	Y	23900648	G	GCTCTA	319	PASS	-	-	-	-	-	Ins	-	I	23900648	23900649	5	36	570.589	-	-	0	1	1	-	-	./.	0	0	0	0	3	10	3	10	0	0	./.	3	8	4	9	16	28	16	29	4	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744741845	1	40289305	GA	G	806	PASS	-	-	-	-	-	Del	-	D	40289305	40289314	1	64	751.25	-	-	8	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	7	7	11	13	22	34	22	34	11	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744746948	1	55387656	TGTGTAGCAGCTTGAAAGAGTTGGAGCCTCTAGGAAGAAAGCATTCTTTCATTGTAGGTGGAAAACTAATTGTTTCCCTTGGCTTA	T	348	PASS	-	-	-	-	-	Del	-	D	55387656	55387746	85	45	644.96	-	-	1	1	1	-	-	./.	0	0	0	0	12	16	12	16	0	0	./.	4	8	0	0	15	18	19	26	4	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744755415	1	82083697	GA	G	600	PASS	LPHN2	ENST00000370728	r.?	-	-	Del	intronic	D	82083697	82083700	1	32	535.059	-	-	2	1	1	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LPHN2|ENST00000370728|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	7	3	11	5	19	16	19	16	11	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744756001	1	83958171	GT	G	1020	PASS	-	-	-	-	-	Del	-	D	83958171	83958174	1	78	913.092	-	-	2	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	5	12	5	12	19	30	19	30	5	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744769719	1	143256239	TC	T	259	PASS	-	-	-	-	-	Del	-	D	143256239	143256244	1	8	376.227	-	-	4	1	1	-	-	./.	0	0	0	0	9	24	9	24	0	0	./.	0	7	1	7	44	73	44	73	1	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744770142	1	143519028	AT	A	423	PASS	-	-	-	-	-	Del	-	D	143519028	143519031	1	16	803.792	-	-	2	1	1	-	-	./.	0	0	0	0	44	45	44	45	0	0	./.	15	0	21	0	165	107	165	107	21	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744770957	1	145170498	G	GTATATATA	377	PASS	-	-	-	-	-	Ins	-	I	145170498	145170513	8	14	633.685	-	-	7	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	13	0	13	0	79	49	81	50	13	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744773022	1	150098501	A	AT	277	PASS	VPS45	CCDS944.1	r.?	-	-	Ins	intronic	I	150098501	150098511	1	12	265.723	-	-	9	1	1	VPS45|CCDS944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS45|CCDS944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	17	10	17	0	0	./.	3	2	5	5	27	37	27	38	5	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744776728	1	157627935	GA	G	960	PASS	-	-	-	-	-	Del	-	D	157627935	157627945	1	77	857.539	-	-	9	1	1	-	-	./.	0	0	0	0	16	10	16	10	0	0	./.	10	6	16	8	53	36	53	36	16	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744779166	1	164141866	A	AG	660	PASS	-	-	-	-	-	Ins	-	I	164141866	164141874	1	40	570.142	-	-	7	1	1	-	-	./.	0	0	0	0	5	18	5	18	0	0	./.	7	4	9	6	29	47	29	48	9	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744779913	1	166025522	TAG	T	300	PASS	-	-	-	-	-	Del	-	D	166025522	166025538	2	10	267.529	-	-	7	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	1	4	2	6	41	50	41	50	2	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744781902	1	171374963	GAGACAA	G	261	PASS	-	-	-	-	-	Del	-	D	171374963	171374983	6	24	483.72	-	-	3	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	2	10	4	40	37	41	37	11	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744784725	1	179370413	AG	A	300	PASS	C1orf125	CCDS30948.1	r.?	-	-	Del	intronic	D	179370413	179370415	1	6	266.325	-	-	1	1	-	C1orf125|CCDS30948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf125|CCDS30948.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	5	0	9	0	38	11	38	11	9	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744786443	1	183328868	G	GA	540	PASS	NMNAT2	CCDS1353.1	r.?	-	-	Ins	intronic	I	183328868	183328873	1	30	476.496	-	-	4	1	1	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NMNAT2|CCDS1353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	13	7	13	0	0	./.	4	5	6	8	34	38	34	38	6	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744792076	1	198827133	T	TA	300	PASS	MIR181B1	ENST00000385240	r.?	-	-	Ins	downstream	I	198827133	198827143	1	10	265.121	-	-	9	1	1	MIR181B1|ENST00000385240|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	MIR181B1|ENST00000385240|r.?|-|-|non_protein_coding:insertion:5KB_downstream_variant|SO:0000011:SO:0000667:SO:0001633	./.	0	0	0	0	8	9	9	9	0	0	./.	1	4	1	5	40	48	40	48	1	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744794570	1	203922621	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	203922621	203922631	1	77	828.038	-	-	9	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	6	10	7	13	35	52	35	52	7	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744795753	1	206860835	GT	G	900	PASS	MAPKAPK2	CCDS31001.1	r.?	-	-	Del	intronic	D	206860835	206860838	1	70	806.201	-	-	2	1	1	MAPKAPK2|CCDS31001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAPKAPK2|CCDS31001.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	6	9	7	13	34	42	34	42	7	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744798751	1	214443487	CTTA	C	389	PASS	-	-	-	-	-	Del	-	D	214443487	214443492	3	18	375.023	-	-	1	1	1	-	-	./.	0	0	0	0	21	12	21	12	0	0	./.	2	5	3	5	35	40	35	40	3	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744804445	1	228013564	C	CT	780	PASS	PRSS38	CCDS1563.1	r.?	-	-	Ins	intronic	I	228013564	228013573	1	54	686.666	-	-	8	1	1	PRSS38|CCDS1563.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRSS38|CCDS1563.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	17	6	17	0	0	./.	8	5	12	11	39	45	39	45	12	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744808933	1	238223079	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	238223079	238223095	2	10	267.529	-	-	7	1	1	-	-	./.	0	0	0	0	6	10	6	10	0	0	./.	1	4	2	5	49	54	49	54	2	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744810271	1	241246554	G	GAAACAAAACA	261	PASS	RGS7	CCDS31071.1	r.?	-	-	Ins	intronic	I	241246554	241246586	10	24	429.535	-	-	6	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	7	2	4	1	63	46	63	47	9	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744814008	1	248854075	AC	A	420	PASS	-	-	-	-	-	Del	-	D	248854075	248854078	1	18	371.41	-	-	2	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	2	5	3	7	33	36	33	36	3	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744829460	10	39061823	C	CA	745	PASS	-	-	-	-	-	Ins	-	I	39061823	39061828	1	66	800.303	-	-	4	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	5	10	6	11	19	30	19	30	6	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744834623	10	56382012	ATG	A	300	PASS	PCDH15	CCDS44404.1	r.?	-	-	Del	intronic	D	56382012	56382028	2	10	269.778	-	-	7	1	1	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCDH15|CCDS44404.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	1	4	1	4	7	29	7	29	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744842084	10	77091372	C	CA	929	PASS	-	-	-	-	-	Ins	-	I	77091372	77091380	1	77	851.248	-	-	7	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	6	10	7	13	26	27	26	27	7	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744844017	10	83426352	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	83426352	83426355	1	16	317.111	-	-	2	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	3	6	5	25	20	25	20	6	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744856740	10	120733785	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	120733785	120733795	1	12	264.359	-	-	9	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	2	3	3	3	26	30	28	30	3	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744857816	10	123383454	G	GGGAA	867	PASS	-	-	-	-	-	Ins	-	I	123383454	123383460	4	77	824.156	-	-	1	1	1	-	-	./.	0	0	0	0	12	9	12	10	0	0	./.	10	6	14	6	40	20	40	20	14	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744858338	10	124492636	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	124492636	124492643	1	32	532.331	-	-	6	1	1	-	-	./.	0	0	0	0	17	11	17	11	0	0	./.	7	3	9	7	28	28	28	28	9	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744871626	11	25485041	T	TG	300	PASS	-	-	-	-	-	Ins	-	I	25485041	25485047	1	10	265.461	-	-	5	1	1	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	4	1	8	5	25	30	25	30	8	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744876355	11	38932111	GT	G	600	PASS	-	-	-	-	-	Del	-	D	38932111	38932117	1	32	540.556	-	-	5	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	3	7	9	13	34	40	34	40	9	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744880086	11	48910888	T	TA	725	PASS	-	-	-	-	-	Ins	-	I	48910888	48910894	1	54	694.896	-	-	5	1	1	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	5	8	6	10	23	28	24	28	6	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744886232	11	69653191	TA	T	900	PASS	-	-	-	-	-	Del	-	D	69653191	69653198	1	66	810.834	-	-	6	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	5	10	10	17	36	48	36	48	10	17	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744887172	11	72481028	ATGAGAAACTTC	A	319	PASS	STARD10	CCDS41688.1	r.?	-	-	Del	intronic	D	72481028	72481041	11	42	594.611	-	-	1	1	1	STARD10|CCDS41688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STARD10|CCDS41688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	6	5	6	6	23	29	23	29	6	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744893859	11	92772381	GTATT	G	1047	PASS	-	-	-	-	-	Del	-	D	92772381	92772389	4	108	1026.45	-	-	1	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	8	11	8	13	21	30	21	30	8	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744896880	11	101527508	A	AA	269	PASS	-	-	-	-	-	Ins	-	I	101527506	101527509	1	12	265.461	-	-	2	1	1	-	-	./.	0	0	0	0	0	14	0	14	0	0	./.	2	3	0	1	10	35	10	35	2	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744900183	11	110300595	ACCGGGCGGCGTGGGCGTGAGAGG	A	493	PASS	FDX1	CCDS8344.1	r.3_25del23	c.?	p.?	Del	5'UTR variant	D	110300595	110300620	23	84	907.506	-	-	1	1	1	FDX1|CCDS8344.1|r.3_25del23|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	FDX1|CCDS8344.1|r.3_25del23|c.?|p.?|protein_coding:five_prime_UTR:exon:deletion:5_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000204:SO:0000147:SO:0000159:SO:0001623:SO:0001576	./.	0	0	0	0	6	6	6	6	0	0	./.	6	11	6	11	29	25	30	25	7	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744901364	11	113799057	AACTG	A	776	PASS	HTR3B	CCDS8364.1	r.?	-	-	Del	intronic	D	113799057	113799063	4	72	810.834	-	-	1	1	1	HTR3B|CCDS8364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	HTR3B|CCDS8364.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	13	14	13	0	0	./.	7	8	7	11	25	28	25	28	7	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744902059	11	115600286	ACC	A	749	PASS	-	-	-	-	-	Del	-	D	115600286	115600290	2	50	702.722	-	-	3	1	1	-	-	./.	0	0	0	0	6	15	6	15	0	0	./.	4	9	6	12	21	29	21	29	6	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744903407	11	119127991	A	AT	1080	PASS	CBL	CCDS8418.1	r.?	-	-	Ins	intronic	I	119127991	119127998	1	96	962.163	-	-	6	1	1	CBL|CCDS8418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CBL|CCDS8418.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	11	7	16	11	30	31	32	31	16	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744906254	11	127332578	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	127332578	127332584	1	44	694.896	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	3	10	4	17	18	28	18	29	4	17	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744906354	11	127687195	T	TG	269	PASS	-	-	-	-	-	Ins	-	I	127687195	127687196	1	12	266.063	-	-	0	1	-	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	2	3	0	1	30	31	30	31	2	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744907485	11	131202215	C	CT	1260	PASS	-	-	-	-	-	Ins	-	I	131202215	131202223	1	132	1120.72	-	-	7	1	1	-	-	./.	0	0	0	0	9	17	9	17	0	0	./.	10	11	18	17	34	44	34	44	18	17	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744916137	12	19091556	GTTTTCTCATATGTAAAAAAA	G	754	PASS	-	-	-	-	-	Del	-	D	19091556	19091578	20	171	1405.83	-	-	1	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	8	18	7	16	26	33	27	35	8	18	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744920289	12	30223613	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	30223613	30223623	1	12	266.739	-	-	9	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	2	3	2	3	41	38	42	38	2	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744922283	12	38308931	GT	G	900	PASS	-	-	-	-	-	Del	-	D	38308931	38308935	1	72	811.054	-	-	3	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	8	7	14	9	32	27	32	27	14	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744924710	12	45703361	T	TC	360	PASS	ANO6	CCDS31782.1	r.?	-	-	Ins	intronic	I	45703361	45703365	1	15	318.401	-	-	3	1	1	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	2	5	4	33	39	33	39	5	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744925280	12	47755956	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	47755956	47755974	2	10	267.943	-	-	8	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	1	4	1	6	24	25	24	25	1	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744932140	12	67825976	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	67825976	67825984	1	30	479.408	-	-	7	1	1	-	-	./.	0	0	0	0	9	16	9	16	0	0	./.	5	4	11	7	28	28	29	29	11	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744935753	12	78982612	GTA	G	267	PASS	-	-	-	-	-	Del	-	D	78982612	78982621	2	16	324.422	-	-	4	1	-	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	3	3	3	5	37	39	37	39	3	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744935931	12	79676143	AG	A	900	PASS	SYT1	CCDS9017.1	r.?	-	-	Del	intronic	D	79676143	79676145	1	70	811.054	-	-	1	1	1	SYT1|CCDS9017.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SYT1|CCDS9017.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	9	6	11	10	30	22	30	22	11	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744937051	12	83466839	A	AT	600	PASS	TMTC2	CCDS9025.1	r.?	-	-	Ins	intronic	I	83466839	83466847	1	35	534.08	-	-	7	1	1	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMTC2|CCDS9025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	6	4	10	7	30	31	30	31	10	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744939134	12	90330777	ATT	A	540	PASS	-	-	-	-	-	Del	-	D	90330777	90330783	2	30	486.03	-	-	5	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	4	7	9	18	33	18	33	7	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744941530	12	96791747	TATGACTGTTCGTAC	T	319	PASS	CDK17	CCDS9061.1	r.?	-	-	Del	intronic	D	96791747	96791763	14	40	592.967	-	-	1	1	1	CDK17|CCDS9061.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CDK17|CCDS9061.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	8	12	8	0	0	./.	4	7	4	5	17	28	17	30	4	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744943819	12	103798585	G	GA	660	PASS	C12orf42	CCDS44963.1	r.?	-	-	Ins	intronic	I	103798585	103798593	1	40	588.15	-	-	7	1	1	C12orf42|CCDS44963.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C12orf42|CCDS44963.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	4	7	6	11	18	40	18	40	6	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744950841	12	122242657	A	AC	540	PASS	SETD1B	ENST00000267197	r.20_21insc	c.14_15insC	p.H8fs*30	Ins	frameshift	I	122242657	122242666	1	30	462.55	-	-	8	1	1	SETD1B|ENST00000267197|r.20_21insc|c.14_15insC|p.H8fs*30|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	SETD1B|ENST00000267197|r.20_21insc|c.14_15insC|p.H8fs*30|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	18	15	18	15	0	0	./.	4	5	7	1	28	21	28	22	7	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744950971	12	122491218	GAAGT	G	296	PASS	BCL7A	CCDS9226.1	r.?	-	-	Del	intronic	D	122491218	122491227	4	18	377.89	-	-	2	1	1	BCL7A|CCDS9226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCL7A|CCDS9226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	5	2	6	3	19	22	19	22	6	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744958621	13	24915620	G	GA	478	PASS	-	-	-	-	-	Ins	-	I	24915620	24915627	1	30	482.398	-	-	6	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	5	6	5	28	18	28	18	6	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744966960	13	47576201	ACCAGCCT	A	406	PASS	-	-	-	-	-	Del	-	D	47576201	47576209	7	60	758.826	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	5	9	5	10	21	33	22	33	6	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744968185	13	50872237	GT	G	1378	PASS	-	-	-	-	-	Del	-	D	50872237	50872245	1	144	1297.23	-	-	7	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	7	17	11	18	22	31	22	31	11	18	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744969145	13	54065366	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	54065366	54065373	2	16	325.211	-	-	3	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	3	3	4	3	34	25	34	25	4	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744969954	13	56729206	AAAG	A	780	PASS	-	-	-	-	-	Del	-	D	56729206	56729218	3	54	704.022	-	-	3	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	5	8	7	13	21	38	21	38	7	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744977402	13	78330301	G	GT	600	PASS	SLAIN1	CCDS31995.1	r.?	-	-	Ins	intronic	I	78330301	78330311	1	35	534.794	-	-	9	1	1	SLAIN1|CCDS31995.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLAIN1|CCDS31995.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	11	17	11	0	0	./.	6	4	6	8	23	25	23	26	6	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744980076	13	87246605	C	CAAAA	509	PASS	-	-	-	-	-	Ins	-	I	87246605	87246607	4	30	466.143	-	-	1	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	4	7	5	26	25	26	26	7	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744985007	13	101209187	ATGCAATCTTGGCTCAC	A	257	PASS	A2LD1	CCDS45066.1	r.?	-	-	Del	intronic	D	101209187	101209225	16	35	542.019	-	-	2	1	1	A2LD1|CCDS45066.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	A2LD1|CCDS45066.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	4	6	4	5	24	20	24	21	4	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744988240	13	110136094	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	110136094	110136102	1	21	428.799	-	-	7	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	2	8	6	26	23	26	23	8	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2744999105	14	41990145	A	ACACT	287	PASS	-	-	-	-	-	Ins	-	I	41990145	41990146	4	12	570.269	-	-	0	1	1	-	-	./.	0	0	0	0	4	10	4	12	0	0	./.	11	0	12	0	56	34	56	42	12	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745000030	14	44455228	A	AAT	329	PASS	-	-	-	-	-	Ins	-	I	44455228	44455229	2	15	315.872	-	-	0	1	1	-	-	./.	0	0	0	0	8	14	9	15	0	0	./.	4	2	0	0	38	37	38	37	4	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745002298	14	50493195	GA	G	480	PASS	-	-	-	-	-	Del	-	D	50493195	50493203	1	24	408.118	-	-	7	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	3	11	7	46	27	46	27	11	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745003284	14	52395955	GT	G	420	PASS	GNG2	CCDS32082.1	r.?	-	-	Del	intronic	D	52395955	52395957	1	14	379.756	-	-	1	1	1	GNG2|CCDS32082.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GNG2|CCDS32082.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	6	1	7	4	40	31	40	31	7	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745007925	14	63206162	A	AT	420	PASS	KCNH5	CCDS9756.1	r.?	-	-	Ins	intronic	I	63206162	63206172	1	20	375.542	-	-	9	1	1	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNH5|CCDS9756.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	17	11	17	0	0	./.	3	4	5	6	47	31	47	31	5	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745022476	15	25402168	ATAGT	A	600	PASS	-	-	-	-	-	Del	-	D	25402168	25402177	4	36	542.724	-	-	2	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	5	5	8	9	18	30	18	30	8	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745022588	15	25715880	CAGGTGATA	C	348	PASS	-	-	-	-	-	Del	-	D	25715880	25715889	8	48	651.269	-	-	1	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	5	7	6	10	23	28	23	28	6	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745022632	15	25843775	CGGAGT	C	466	PASS	-	-	-	-	-	Del	-	D	25843775	25843783	5	70	814.086	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	6	9	9	10	26	27	26	28	9	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745024282	15	30968369	GAC	G	1260	PASS	ARHGAP11B	CCDS32185.1	r.?	-	-	Del	intronic	D	30968369	30968373	2	130	1138.52	-	-	1	1	1	ARHGAP11B|CCDS32185.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	ARHGAP11B|CCDS32185.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	6	8	6	0	0	./.	9	12	12	14	30	26	30	26	12	14	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745044144	15	85405085	C	CT	660	PASS	ALPK3	CCDS10333.1	r.?	-	-	Ins	intronic	I	85405085	85405094	1	42	589.771	-	-	8	1	1	ALPK3|CCDS10333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ALPK3|CCDS10333.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	15	10	0	0	./.	5	6	10	11	29	36	30	38	10	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745044727	15	86660546	C	CT	838	PASS	-	-	-	-	-	Ins	-	I	86660546	86660555	1	66	799.636	-	-	8	1	1	-	-	./.	0	0	0	0	14	6	14	6	0	0	./.	5	10	8	10	34	30	35	31	9	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745047742	15	95374535	TG	T	600	PASS	-	-	-	-	-	Del	-	D	95374535	95374540	1	32	542.724	-	-	4	1	1	-	-	./.	0	0	0	0	13	21	13	21	0	0	./.	7	3	10	6	37	27	37	27	10	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745048717	15	98364054	CAT	C	840	PASS	AC027708.1	ENST00000503768	r.?	-	-	Del	intronic	D	98364054	98364058	2	60	759.211	-	-	1	1	1	AC027708.1|ENST00000503768|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC027708.1|ENST00000503768|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	9	5	12	8	29	30	29	30	12	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745058641	16	16567310	TAA	T	278	PASS	-	-	-	-	-	Del	-	D	16567310	16567314	2	11	541.017	-	-	3	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	0	10	0	15	32	66	32	66	0	15	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745060231	16	20158664	GGGGAA	G	958	PASS	-	-	-	-	-	Del	-	D	20158664	20158673	5	90	919.729	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	8	9	11	11	40	40	40	40	11	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745066175	16	32347391	GA	G	259	PASS	-	-	-	-	-	Del	-	D	32347391	32347398	1	10	482.701	-	-	6	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	9	0	8	0	37	26	38	26	9	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745067646	16	33638513	A	AT	267	PASS	-	-	-	-	-	Ins	-	I	33638513	33638523	1	12	587.894	-	-	9	1	1	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	0	11	0	18	1	65	1	65	0	18	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745069684	16	46991529	TA	T	277	PASS	DNAJA2	CCDS10726.1	r.?	-	-	Del	intronic	D	46991529	46991537	1	6	261.478	-	-	7	1	1	DNAJA2|CCDS10726.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJA2|CCDS10726.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	0	5	1	0	36	33	36	33	1	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745070163	16	48618442	CTCTA	C	778	PASS	N4BP1	CCDS45479.1	r.?	-	-	Del	intronic	D	48618442	48618452	4	39	756.822	-	-	2	1	1	N4BP1|CCDS45479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	N4BP1|CCDS45479.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	2	12	3	11	37	40	37	41	3	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745082610	16	77246767	TC	T	840	PASS	SYCE1L	CCDS45533.1	r.669delC	c.669delC	p.R225fs*>68	Del	frameshift	D	77246767	77246773	1	55	754.413	-	-	5	1	1	SYCE1L|CCDS45533.1|r.669delC|c.669delC|p.R225fs*>68|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	SYCE1L|CCDS45533.1|r.669delC|c.669delC|p.R225fs*>68|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	11	12	11	12	0	0	./.	10	4	11	6	41	32	41	32	11	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745093599	17	11169716	GAATGAGAACCTGTAATTTGGTGAAATCACTTGGCAATTAGAGTTTGAGAAGCACTGGGAAAGCTTGAGCATTGAAGTATGTTCCTCAGTTTGCTTTTTGGCCCTGTCTCTTACTATGTATGTGATCTTGGGCAAGATTCTTTGTCTTTCCAAGTTTCTTTGTCTGCTATTGAAGCCAATCATACCTGTAGGTCAGAGTTGTTTTAATGGTATAATCAGTTAAACCAAGTAAAGCACTTAAGACAGGTCCCCATACATAGCAAACACTGACTGTTAGCCATGACCAGGCTATGAAGGCACATCCACAGCTC	GGAAAGGT	290	PASS	SHISA6	CCDS45615.1	r.?	-	-	Complex	intronic	DI	11169717	11170026	310	36	0	-	-	0	1	1	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	SHISA6|CCDS45615.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	5	5	0	0	13	22	18	27	5	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745099278	17	25958795	CACTCCCAGGGTTGGGAT	C	348	PASS	LGALS9	CCDS11222.1	r.?	-	-	Del	intronic	D	25958795	25958814	17	49	649.895	-	-	1	1	1	LGALS9|CCDS11222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LGALS9|CCDS11222.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	6	6	5	6	24	24	25	24	6	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745099371	17	26339052	GGA	G	300	PASS	-	-	-	-	-	Del	-	D	26339052	26339068	2	10	271.041	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	1	4	1	4	29	46	29	46	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745110000	17	52127321	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	52127321	52127327	1	49	643.273	-	-	5	1	1	-	-	./.	0	0	0	0	15	10	15	10	0	0	./.	6	6	11	10	26	36	26	36	11	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745111640	17	56889391	G	GA	1140	PASS	PPM1E	CCDS11613.1	r.?	-	-	Ins	intronic	I	56889391	56889400	1	98	1015.5	-	-	8	1	1	PPM1E|CCDS11613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPM1E|CCDS11613.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	6	13	9	16	28	33	28	33	9	16	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745112984	17	60295143	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	60295143	60295152	1	56	696.277	-	-	8	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	6	7	11	8	33	31	35	31	11	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745113390	17	61673634	T	TG	720	PASS	KCNH6	CCDS11638.1	r.?	-	-	Ins	intronic	I	61673634	61673639	1	48	643.273	-	-	4	1	1	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	5	7	11	11	28	34	28	34	11	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745115868	17	67489126	A	AT	420	PASS	MAP2K6	CCDS11686.1	r.?	-	-	Ins	intronic	I	67489126	67489136	1	20	375.242	-	-	9	1	1	MAP2K6|CCDS11686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAP2K6|CCDS11686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	20	3	20	0	0	./.	4	3	4	3	35	34	36	34	4	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745121594	18	71885	AAAAAG	A	337	PASS	-	-	-	-	-	Del	-	D	71885	71897	5	14	700.647	-	-	2	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	13	0	17	0	35	27	35	27	17	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745125666	18	9655393	C	CT	960	PASS	-	-	-	-	-	Ins	-	I	9655393	9655402	1	80	858.629	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	7	9	12	12	28	30	29	31	12	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745131645	18	29049777	TATTA	T	600	PASS	DSG3	CCDS11898.1	r.?	-	-	Del	intronic	D	29049777	29049795	4	36	542.664	-	-	4	1	1	DSG3|CCDS11898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DSG3|CCDS11898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	5	5	7	5	21	21	21	21	7	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745135924	18	43064694	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	43064694	43064712	2	12	270.73	-	-	8	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	3	2	3	3	33	29	33	29	3	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745144223	18	67138821	G	GGT	389	PASS	DOK6	CCDS32841.1	r.?	-	-	Ins	intronic	I	67138821	67138822	2	18	359.395	-	-	0	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	2	5	0	0	20	16	20	16	2	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745147168	18	75326196	TTCATCTATATCTATCTA	T	319	PASS	-	-	-	-	-	Del	-	D	75326196	75326250	17	22	596.328	-	-	3	1	-	-	-	./.	0	0	0	0	10	15	11	15	0	0	./.	1	10	1	1	28	44	32	50	1	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745148641	19	1659748	G	GA	1020	PASS	-	-	-	-	-	Ins	-	I	1659748	1659753	1	90	909.402	-	-	4	1	1	-	-	./.	0	0	0	0	12	6	12	6	0	0	./.	8	9	11	13	35	29	35	29	11	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745155009	19	14399538	A	AG	266	PASS	-	-	-	-	-	Ins	-	I	14399538	14399542	1	11	536.111	-	-	3	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	10	0	4	0	31	30	37	30	10	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745155985	19	16155526	C	CT	329	PASS	ENSG00000167459	ENST00000397365	r.?	-	-	Ins	downstream	I	16155526	16155527	1	15	322.028	-	-	0	1	1	ENSG00000167459|ENST00000397365|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000167459|ENST00000397365|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	11	10	11	10	0	0	./.	4	2	0	1	35	24	35	25	4	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745159484	19	23173071	AG	A	636	PASS	-	-	-	-	-	Del	-	D	23173071	23173074	1	36	595.803	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	8	6	9	14	26	14	26	6	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745163084	19	34924988	T	TA	780	PASS	UBA2	CCDS12439.1	r.?	-	-	Ins	intronic	I	34924988	34924990	1	56	695.319	-	-	1	1	1	UBA2|CCDS12439.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	UBA2|CCDS12439.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	12	9	0	0	./.	7	6	11	11	36	29	36	29	11	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745167257	19	45116139	TG	T	1140	PASS	ENSG00000216588	ENST00000402988	r.?	-	-	Del	upstream	D	45116139	45116144	1	108	1028.18	-	-	4	1	1	ENSG00000216588|ENST00000402988|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000216588|ENST00000402988|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	17	12	17	0	0	./.	8	11	15	15	37	31	37	31	15	15	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745174351	19	58841799	TA	T	480	PASS	ZSCAN22	CCDS12975.1	r.?	-	-	Del	intronic	D	58841799	58841801	1	25	434.187	-	-	1	1	1	ZSCAN22|CCDS12975.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZSCAN22|CCDS12975.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	4	6	6	14	19	14	19	6	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745175220	2	2656804	CAGTT	C	536	PASS	-	-	-	-	-	Del	-	D	2656804	2656811	4	42	592.375	-	-	1	1	1	-	-	./.	0	0	0	0	9	2	9	2	0	0	./.	6	5	8	5	28	26	28	26	8	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745176333	2	6173119	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	6173119	6173127	1	16	319.501	-	-	7	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	3	3	4	4	32	28	32	28	4	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745177651	2	10171848	G	GT	540	PASS	-	-	-	-	-	Ins	-	I	10171848	10171858	1	30	477.446	-	-	9	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	4	12	5	25	30	25	30	12	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745178250	2	11416506	AAAAAT	A	749	PASS	ROCK2	CCDS42654.1	r.?	-	-	Del	intronic	D	11416506	11416515	5	54	700.08	-	-	1	1	1	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ROCK2|CCDS42654.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	5	14	5	0	0	./.	8	5	9	8	28	23	28	23	9	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745180650	2	18888491	ATGTC	A	900	PASS	-	-	-	-	-	Del	-	D	18888491	18888499	4	66	807.784	-	-	1	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	10	5	10	9	27	26	27	26	10	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745181350	2	21092410	C	CT	780	PASS	-	-	-	-	-	Ins	-	I	21092410	21092419	1	36	692.253	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	11	4	15	24	34	25	34	4	15	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745183316	2	26767389	AT	A	600	PASS	OTOF	CCDS1725.1	r.?	-	-	Del	intronic	D	26767389	26767395	1	27	537.921	-	-	5	1	1	OTOF|CCDS1725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OTOF|CCDS1725.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	2	8	3	11	18	35	18	35	3	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745193183	2	55051013	CTT	C	360	PASS	EML6	CCDS46286.1	r.?	-	-	Del	intronic	D	55051013	55051017	2	16	321.307	-	-	3	1	-	EML6|CCDS46286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EML6|CCDS46286.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	9	21	9	0	0	./.	3	3	4	4	28	39	28	39	4	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745194727	2	60428168	AT	A	895	PASS	-	-	-	-	-	Del	-	D	60428168	60428170	1	66	798.151	-	-	1	1	1	-	-	./.	0	0	0	0	15	14	15	14	0	0	./.	10	5	13	7	33	17	33	17	13	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745204943	2	91815250	TGA	T	929	PASS	-	-	-	-	-	Del	-	D	91815250	91815257	2	80	861.034	-	-	3	1	1	-	-	./.	0	0	0	0	62	67	62	67	0	0	./.	9	7	12	11	180	185	180	185	12	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745211338	2	113366638	TA	T	356	PASS	-	-	-	-	-	Del	-	D	113366638	113366640	1	21	426.604	-	-	1	1	-	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	2	6	8	5	63	53	63	54	10	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745214781	2	126182481	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	126182481	126182489	1	15	319.501	-	-	7	1	1	-	-	./.	0	0	0	0	4	12	4	13	0	0	./.	2	4	3	7	14	22	14	22	3	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745217918	2	135945690	C	CA	480	PASS	ZRANB3	ENST00000283060	r.?	-	-	Ins	intronic	I	135945690	135945698	1	9	423.594	-	-	7	1	1	ZRANB3|ENST00000283060|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZRANB3|ENST00000283060|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	14	11	0	0	./.	0	8	10	9	17	13	17	13	10	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745218083	2	136955772	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	136955772	136955779	1	66	798.753	-	-	6	1	1	-	-	./.	0	0	0	0	15	16	15	16	0	0	./.	5	10	9	13	13	20	13	20	9	13	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745221311	2	149948704	T	TG	1020	PASS	LYPD6B	CCDS46423.1	r.?	-	-	Ins	intronic	I	149948704	149948713	1	88	896.223	-	-	8	1	1	LYPD6B|CCDS46423.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LYPD6B|CCDS46423.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	7	10	10	16	21	24	21	24	10	16	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745222308	2	153503096	C	CG	780	PASS	FMNL2	CCDS46429.1	r.?	-	-	Ins	intronic	I	153503096	153503103	1	44	691.049	-	-	6	1	1	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FMNL2|CCDS46429.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	10	3	10	4	23	14	23	14	10	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745234860	2	197598141	G	GA	540	PASS	CCDC150	CCDS46478.1	r.?	-	-	Ins	downstream	I	197598141	197598149	1	28	479.252	-	-	7	1	1	CCDC150|CCDS46478.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	CCDC150|CCDS46478.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	6	12	6	0	0	./.	3	6	4	8	35	27	35	27	4	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745249275	20	1817343	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	1817343	1817347	1	12	268.881	-	-	3	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	3	2	4	2	31	15	31	15	4	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745255859	20	21291276	G	GT	420	PASS	XRN2	CCDS13144.1	r.?	-	-	Ins	intronic	I	21291276	21291284	1	18	375.831	-	-	7	1	1	XRN2|CCDS13144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	XRN2|CCDS13144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	11	4	12	0	0	./.	5	2	6	3	24	40	25	41	6	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745256515	20	24077940	TA	T	989	PASS	-	-	-	-	-	Del	-	D	24077940	24077943	1	90	897.337	-	-	2	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	8	9	10	10	24	32	24	32	10	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745258939	20	29960349	TA	T	300	PASS	DEFB118	CCDS13177.1	r.?	-	-	Del	intronic	D	29960349	29960359	1	12	271.891	-	-	9	1	1	DEFB118|CCDS13177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DEFB118|CCDS13177.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	2	3	23	30	23	30	2	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745259884	20	32201533	C	CT	900	PASS	CBFA2T2	CCDS13221.1	r.?	-	-	Ins	intronic	I	32201533	32201540	1	60	806.04	-	-	6	1	1	CBFA2T2|CCDS13221.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CBFA2T2|CCDS13221.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	4	11	8	17	34	35	34	35	8	17	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745265759	20	48832820	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	48832820	48832840	2	10	271.891	-	-	9	1	1	-	-	./.	0	0	0	0	5	17	5	17	0	0	./.	1	4	1	4	15	36	15	36	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745267604	20	53302931	TG	T	720	PASS	-	-	-	-	-	Del	-	D	53302931	53302938	1	48	652.538	-	-	6	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	7	5	9	7	30	25	30	25	9	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745268100	20	54879223	A	AT	1320	PASS	-	-	-	-	-	Ins	-	I	54879223	54879230	1	135	1180.67	-	-	6	1	1	-	-	./.	0	0	0	0	22	15	23	15	0	0	./.	14	8	18	10	45	38	45	38	18	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745270599	20	62649082	A	AT	360	PASS	ZNF512B	CCDS13548.1	r.?	-	-	Ins	intronic	I	62649082	62649092	1	12	317.84	-	-	9	1	1	ZNF512B|CCDS13548.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZNF512B|CCDS13548.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	5	1	5	2	36	48	37	48	5	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745275145	21	15861833	C	CG	300	PASS	SAMSN1	CCDS42906.1	r.?	-	-	Ins	intronic	I	15861833	15861834	1	12	268.988	-	-	0	1	1	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SAMSN1|CCDS42906.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	11	5	11	0	0	./.	2	3	7	4	24	36	24	36	7	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745280911	21	30658031	TA	T	1200	PASS	-	-	-	-	-	Del	-	D	30658031	30658033	1	112	1087.99	-	-	1	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	13	7	15	10	40	26	40	26	15	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745281353	21	32152795	C	CT	540	PASS	-	-	-	-	-	Ins	-	I	32152795	32152805	1	28	478.158	-	-	9	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	3	6	6	6	34	32	35	32	6	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745283183	21	36232163	CAT	C	747	PASS	RUNX1	CCDS42922.1	r.?	-	-	Del	intronic	D	36232163	36232167	2	48	761.595	-	-	1	1	1	RUNX1|CCDS42922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUNX1|CCDS42922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	11	3	11	4	44	19	44	19	11	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745288388	22	17321107	C	CA	545	PASS	ENSG00000234339	ENST00000435569	r.?	-	-	Ins	upstream	I	17321107	17321116	1	35	538.913	-	-	8	1	-	ENSG00000234339|ENST00000435569|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	ENSG00000234339|ENST00000435569|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	11	14	11	14	0	0	./.	4	6	12	11	21	23	22	23	12	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745293126	22	33057938	A	AT	360	PASS	Z73979.2	CCDS11576.1	r.?	-	-	Ins	intronic	I	33057938	33057946	1	16	324.793	-	-	7	1	1	Z73979.2|CCDS11576.1|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	Z73979.2|CCDS11576.1|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	3	3	3	3	24	21	24	21	3	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745293758	22	35175084	C	CCT	493	PASS	-	-	-	-	-	Ins	-	I	35175084	35175085	2	32	532.29	-	-	0	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	3	7	0	0	11	21	11	21	3	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745305153	3	15803716	A	AC	360	PASS	ANKRD28	CCDS46769.1	r.?	-	-	Ins	intronic	I	15803716	15803717	1	7	317.451	-	-	0	1	-	ANKRD28|CCDS46769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD28|CCDS46769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	0	6	3	4	35	35	35	35	3	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745306018	3	18432882	TA	T	298	PASS	SATB1	CCDS2631.1	r.?	-	-	Del	intronic	D	18432882	18432884	1	7	318.655	-	-	1	1	1	SATB1|CCDS2631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SATB1|CCDS2631.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	6	0	1	0	44	33	44	33	7	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745312471	3	35078185	T	TA	989	PASS	-	-	-	-	-	Ins	-	I	35078185	35078193	1	78	903.357	-	-	7	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	12	5	17	8	41	29	42	29	17	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745315186	3	42102849	C	CCA	420	PASS	-	-	-	-	-	Ins	-	I	42102849	42102866	2	20	359.221	-	-	8	1	-	-	-	./.	0	0	0	0	9	5	9	5	0	0	./.	4	3	9	5	22	18	22	18	9	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745327224	3	71173806	G	GGA	360	PASS	FOXP1	CCDS2914.1	r.?	-	-	Ins	intronic	I	71173806	71173807	2	12	312.634	-	-	0	1	-	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	1	5	0	0	30	30	30	31	1	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745328596	3	74152437	TG	T	660	PASS	-	-	-	-	-	Del	-	D	74152437	74152440	1	42	591.927	-	-	2	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	5	6	8	10	35	33	35	33	8	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745334085	3	86739569	CCAGA	C	1738	PASS	-	-	-	-	-	Del	-	D	86739569	86739576	4	231	1610.13	-	-	1	1	1	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	10	20	13	24	30	46	30	46	13	24	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745338655	3	102839340	TC	T	329	PASS	-	-	-	-	-	Del	-	D	102839340	102839342	1	16	312.032	-	-	1	1	1	-	-	./.	0	0	0	0	2	11	2	11	0	0	./.	3	3	5	3	31	33	31	33	5	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745340740	3	108554669	C	CT	1889	PASS	TRAT1	CCDS33813.1	r.?	-	-	Ins	intronic	I	108554669	108554678	1	285	1685.24	-	-	8	1	1	TRAT1|CCDS33813.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TRAT1|CCDS33813.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	11	3	11	0	0	./.	14	18	18	33	46	70	46	70	18	33	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745343110	3	114282968	ATC	A	360	PASS	ZBTB20	CCDS2981.1	r.?	-	-	Del	intronic	D	114282968	114282984	2	15	321.665	-	-	7	1	1	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ZBTB20|CCDS2981.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	4	2	5	2	31	31	31	31	5	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745344748	3	118842505	CAG	C	269	PASS	IGSF11	CCDS2983.1	r.?	-	-	Del	intronic	D	118842505	118842523	2	12	268.456	-	-	8	1	1	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IGSF11|CCDS2983.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	2	35	47	35	47	3	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745348479	3	128081673	AGCTCAAAAGGGTACTCATATCTCAG	A	812	PASS	EEFSEC	CCDS33849.1	r.?	-	-	Del	intronic	D	128081673	128081701	25	209	1506.12	-	-	1	1	1	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EEFSEC|CCDS33849.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	10	18	8	13	35	40	37	45	10	18	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745350320	3	132649900	TTCA	T	1618	PASS	-	-	-	-	-	Del	-	D	132649900	132649909	3	189	1501.91	-	-	2	1	1	-	-	./.	0	0	0	0	5	12	5	12	0	0	./.	8	20	11	23	22	44	22	44	11	23	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745351646	3	136309836	G	GT	1020	PASS	STAG1	CCDS3090.1	r.?	-	-	Ins	intronic	I	136309836	136309846	1	70	900.346	-	-	9	1	1	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	STAG1|CCDS3090.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	14	5	14	0	0	./.	4	13	7	22	25	44	25	45	7	22	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745353941	3	142082933	TACTTA	T	929	PASS	XRN1	CCDS3123.1	r.?	-	-	Del	intronic	D	142082933	142082944	5	80	860.382	-	-	2	1	1	XRN1|CCDS3123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XRN1|CCDS3123.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	7	9	8	9	35	35	35	35	8	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745355525	3	146187566	CA	C	360	PASS	PLSCR2	CCDS3134.1	r.?	-	-	Del	intronic	D	146187566	146187568	1	7	322.267	-	-	1	1	1	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLSCR2|CCDS3134.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	10	4	10	0	0	./.	0	6	0	8	35	47	35	47	0	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745360449	3	159543562	G	GA	360	PASS	SCHIP1	CCDS3186.1	r.?	-	-	Ins	intronic	I	159543562	159543572	1	16	318.655	-	-	9	1	1	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCHIP1|CCDS3186.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	3	3	36	50	36	50	3	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745364061	3	169221497	C	CA	360	PASS	MECOM	ENST00000494292	r.?	-	-	Ins	intronic	I	169221497	169221505	1	12	317.451	-	-	7	1	1	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MECOM|ENST00000494292|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	1	5	2	5	37	40	37	40	2	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745367445	3	177242041	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	177242041	177242051	1	12	266.047	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	3	2	4	3	35	41	35	41	4	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745368241	3	179353288	TCA	T	360	PASS	-	-	-	-	-	Del	-	D	179353288	179353308	2	16	322.869	-	-	9	1	-	-	-	./.	0	0	0	0	2	9	2	9	0	0	./.	3	3	4	3	21	43	21	43	4	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745374586	3	194354862	G	GA	298	PASS	TMEM44	CCDS3308.1	r.?	-	-	Ins	upstream	I	194354862	194354871	1	15	319.257	-	-	8	1	1	TMEM44|CCDS3308.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	TMEM44|CCDS3308.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	12	14	12	14	0	0	./.	2	4	0	1	47	57	47	57	2	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745378361	4	4547969	T	TC	540	PASS	STX18	CCDS3377.1	r.?	-	-	Ins	upstream	I	4547969	4547976	1	30	479.648	-	-	6	1	1	STX18|CCDS3377.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	STX18|CCDS3377.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	8	8	8	8	0	0	./.	5	4	15	5	36	24	37	24	15	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745382573	4	17213684	AGAAAGAA	ATTAT	580	PASS	-	-	-	-	-	Complex	-	DI	17213685	17213691	7	117	0	-	-	0	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	12	8	0	0	25	21	26	21	12	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745384141	4	22066752	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	22066752	22066758	1	56	692.222	-	-	5	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	7	6	9	7	35	37	35	37	9	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745391899	4	44129191	T	TG	900	PASS	-	-	-	-	-	Ins	-	I	44129191	44129195	1	72	798.81	-	-	3	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	7	8	11	10	29	25	29	25	11	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745392905	4	47771580	C	CA	600	PASS	CORIN	CCDS3477.1	r.?	-	-	Ins	intronic	I	47771580	47771590	1	36	532.34	-	-	9	1	1	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CORIN|CCDS3477.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	5	5	7	7	27	38	28	39	7	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745396717	4	58927082	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	58927082	58927090	1	28	479.648	-	-	7	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	6	8	7	32	24	32	24	8	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745398128	4	62564319	A	AT	660	PASS	LPHN3	ENST00000512091	r.?	-	-	Ins	intronic	I	62564319	62564328	1	30	586.236	-	-	8	1	1	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LPHN3|ENST00000512091|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	13	11	14	0	0	./.	9	2	13	5	38	16	39	16	13	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745404734	4	81585050	G	GT	567	PASS	C4orf22	CCDS3587.1	r.?	-	-	Ins	intronic	I	81585050	81585059	1	40	585.634	-	-	8	1	1	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C4orf22|CCDS3587.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	16	15	16	0	0	./.	4	7	7	11	23	26	23	26	7	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745404973	4	82549904	CAGACAACAAGTAAATGATTAATTCAGAATATATGT	C	406	PASS	-	-	-	-	-	Del	-	D	82549904	82549942	35	63	754.547	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	6	8	4	6	21	23	23	25	6	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745405881	4	84707532	TTTAA	T	480	PASS	-	-	-	-	-	Del	-	D	84707532	84707543	4	24	431.17	-	-	2	1	1	-	-	./.	0	0	0	0	8	15	8	15	0	0	./.	5	3	11	5	26	19	26	19	11	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745408281	4	92828410	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	92828410	92828418	1	24	426.353	-	-	7	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	3	7	7	30	25	30	26	7	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745410654	4	101362086	CA	C	300	PASS	EMCN	CCDS3655.1	r.?	-	-	Del	intronic	D	101362086	101362096	1	10	268.879	-	-	9	1	1	EMCN|CCDS3655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EMCN|CCDS3655.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	1	4	1	4	29	25	29	25	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745412958	4	109092122	T	TC	960	PASS	LEF1	CCDS3679.1	r.?	-	-	Ins	upstream	I	109092122	109092130	1	80	852.105	-	-	7	1	1	LEF1|CCDS3679.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	LEF1|CCDS3679.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	12	8	12	8	0	0	./.	7	9	12	14	26	36	26	36	12	14	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745420070	4	130372575	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	130372575	130372583	1	44	692.824	-	-	7	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	10	3	12	5	35	19	35	19	12	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745420513	4	131736362	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	131736362	131736372	1	12	264.665	-	-	9	1	1	-	-	./.	0	0	0	0	17	10	17	10	0	0	./.	3	2	3	2	31	36	31	36	3	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745433702	4	171068793	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	171068793	171068813	2	10	267.675	-	-	9	1	-	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	1	4	1	4	27	26	27	26	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745437006	4	180523667	TC	T	1080	PASS	-	-	-	-	-	Del	-	D	180523667	180523670	1	99	970.132	-	-	2	1	1	-	-	./.	0	0	0	0	8	16	8	16	0	0	./.	10	8	12	12	28	25	28	25	12	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745437117	4	180815947	AAT	A	840	PASS	-	-	-	-	-	Del	-	D	180815947	180815951	2	48	754.547	-	-	1	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	11	3	15	8	36	35	36	35	15	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745450143	5	21247082	A	ACG	300	PASS	-	-	-	-	-	Ins	-	I	21247082	21247084	2	12	263.901	-	-	0	1	-	-	-	./.	0	0	0	0	8	13	10	13	0	0	./.	3	2	5	5	22	28	22	30	5	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745456457	5	38817807	TGA	T	360	PASS	ENSG00000205783	ENST00000381778	r.?	-	-	Del	downstream	D	38817807	38817824	2	15	322.702	-	-	8	1	1	ENSG00000205783|ENST00000381778|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ENSG00000205785|ENST00000381785|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	15	15	15	0	0	./.	2	4	2	5	32	30	32	30	2	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745456799	5	39912942	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	39912942	39912952	1	10	266.912	-	-	9	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	1	4	1	3	36	31	37	33	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745463946	5	65527443	G	GT	720	PASS	AC092373.1	ENST00000510964	r.?	-	-	Ins	intronic	I	65527443	65527451	1	48	640.588	-	-	7	1	1	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	AC092373.1|ENST00000510964|r.?|-|-|non_protein_coding:intron:insertion:intron_variant|SO:0000011:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	7	5	10	7	33	26	34	26	10	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745468726	5	80703808	AACTC	A	658	PASS	AC010623.1	ENST00000512252	r.?	-	-	Del	downstream	D	80703808	80703820	4	40	647.813	-	-	2	1	1	AC010623.1|ENST00000512252|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	AC010623.1|ENST00000512252|r.?|-|-|non_protein_coding:deletion:500B_downstream_variant|SO:0000011:SO:0000159:SO:0001634	./.	0	0	0	0	10	12	10	12	0	0	./.	9	3	11	5	32	20	32	20	11	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745469637	5	83763567	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	83763567	83763576	1	27	526.599	-	-	8	1	1	-	-	./.	0	0	0	0	6	5	6	6	0	0	./.	2	8	3	14	20	30	20	30	3	14	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745474299	5	99670555	C	CA	498	PASS	-	-	-	-	-	Ins	-	I	99670555	99670564	1	55	747.353	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	4	10	8	12	19	32	19	32	8	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745480098	5	119174101	TC	T	540	PASS	-	-	-	-	-	Del	-	D	119174101	119174103	1	28	485.86	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	6	3	8	7	20	27	20	27	8	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745480720	5	121432956	GTTTAC	G	778	PASS	-	-	-	-	-	Del	-	D	121432956	121432964	5	63	755.782	-	-	1	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	8	7	10	28	21	28	21	7	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745481141	5	122743967	CAAATCAATAGAACTGAAGACAGG	C	348	PASS	CEP120	CCDS4134.2	r.?	-	-	Del	intronic	D	122743967	122744002	23	48	647.813	-	-	1	1	1	CEP120|CCDS4134.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP120|CCDS4134.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	5	7	0	0	31	17	31	19	5	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745481222	5	123061862	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	123061862	123061878	2	6	268.718	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	0	5	0	5	28	35	28	35	0	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745485191	5	135859598	G	GAA	300	PASS	-	-	-	-	-	Ins	-	I	135859598	135859600	2	12	263.901	-	-	1	1	-	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	2	3	6	5	23	20	23	20	6	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745492651	5	159048534	TC	T	1080	PASS	-	-	-	-	-	Del	-	D	159048534	159048540	1	96	967.505	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	11	7	14	8	29	22	29	22	14	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745493077	5	160272593	G	GT	480	PASS	ATP10B	CCDS43394.1	r.?	-	-	Ins	intronic	I	160272593	160272601	1	25	427.059	-	-	7	1	1	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ATP10B|CCDS43394.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	19	6	19	0	0	./.	4	4	4	9	23	28	24	28	4	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745498776	5	177037456	GA	G	300	PASS	B4GALT7	CCDS4429.1	r.?	-	-	Del	downstream	D	177037456	177037458	1	6	266.31	-	-	1	1	1	B4GALT7|CCDS4429.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	B4GALT7|CCDS4429.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	9	5	9	5	0	0	./.	5	0	6	0	26	30	26	30	6	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745505705	6	13610841	GAAAGGGGCACTTGAAATCACTTAA	G	464	PASS	SIRT5	CCDS4527.1	r.?	-	-	Del	downstream	D	13610841	13610866	24	77	861.591	-	-	1	1	1	SIRT5|CCDS4527.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SIRT5|CCDS4526.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	10	6	8	6	27	18	30	18	11	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745511284	6	27833162	AGCTCGCGCCAAAGCCAAGACCC	A	290	PASS	HIST1H2AL	CCDS4634.1	r.130_151del22	c.31_52del22	p.R12fs*41	Del	frameshift	D	27833162	27833189	22	35	537.817	-	-	1	1	1	HIST1H2AL|CCDS4634.1|r.130_151del22|c.31_52del22|p.R12fs*41|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	HIST1H2AL|CCDS4634.1|r.130_151del22|c.31_52del22|p.R12fs*41|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	10	10	10	10	0	0	./.	4	6	4	6	22	16	22	16	4	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745513665	6	32442462	T	TG	316	PASS	-	-	-	-	-	Ins	-	I	32442462	32442466	1	32	533.603	-	-	3	1	1	-	-	./.	0	0	0	0	8	12	10	12	0	0	./.	3	7	3	12	33	40	43	40	3	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745526951	6	69605672	G	GT	269	PASS	BAI3	CCDS4968.1	r.?	-	-	Ins	intronic	I	69605672	69605682	1	10	266.199	-	-	9	1	1	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BAI3|CCDS4968.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	4	1	4	1	24	29	25	29	4	1	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745526975	6	69685188	TTTGCAAGATGCATATCAAATGAGTACAGACACTTGCAGCATTCAGTAGGTGCAAAGCCAGCTTTAGTACTTGCTCTGTTTATTTTTTGCTAATGATCACTGTGTGAGAATTTAACCTTCTGCTGTACAATCAAATCAGTAACATCTCTAAAAAAGAAATGCCTGAAGGAGAAAGCAATGTGATAGAAAGCTAATTTTTATAGGTCAGTGCTAAATTGTTTTGTTCCTAGGACTTGGGTTTTTATGGATCCTGCTATTTAAATGAAAGAACCCTTTGTC	T	348	PASS	BAI3	CCDS4968.1	r.2512_2555+234del278	c.1691_1734+234del278	p.?	Del	ess splice	D	69685188	69685468	278	40	646.946	-	-	1	1	1	BAI3|CCDS4968.1|r.2512_2555+234del278|c.1691_1734+234del278|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	BAI3|CCDS4968.1|r.2512_2555+234del278|c.1691_1734+234del278|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:deletion:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:0000159:SO:0001577:SO:0001576	./.	0	0	0	0	9	9	9	9	0	0	./.	3	9	0	0	15	22	18	31	3	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745531329	6	83491644	CAA	C	900	PASS	-	-	-	-	-	Del	-	D	83491644	83491650	2	72	805.22	-	-	5	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	8	7	8	8	29	24	29	24	8	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745531758	6	84992879	GA	G	629	PASS	-	-	-	-	-	Del	-	D	84992879	84992885	1	36	585.157	-	-	5	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	8	3	12	4	40	20	40	20	12	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745531782	6	85114368	AT	A	540	PASS	-	-	-	-	-	Del	-	D	85114368	85114373	1	30	485.661	-	-	4	1	-	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	5	4	12	7	29	22	29	22	12	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745532466	6	87231918	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	87231918	87231927	1	48	636.109	-	-	8	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	7	5	8	8	22	27	22	28	8	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745532817	6	88284662	GAAGA	G	480	PASS	RARS2	CCDS5011.1	r.?	-	-	Del	intronic	D	88284662	88284671	4	21	431.699	-	-	2	1	1	RARS2|CCDS5011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RARS2|CCDS5011.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	2	6	3	6	14	31	14	31	3	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745534300	6	92869670	TA	T	420	PASS	-	-	-	-	-	Del	-	D	92869670	92869679	1	14	375.93	-	-	8	1	1	-	-	./.	0	0	0	0	8	5	8	5	0	0	./.	1	6	3	7	10	20	10	20	3	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745540345	6	110889870	A	AT	960	PASS	-	-	-	-	-	Ins	-	I	110889870	110889877	1	81	853.162	-	-	6	1	1	-	-	./.	0	0	0	0	15	11	15	11	0	0	./.	8	8	11	11	33	31	33	31	11	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745541948	6	115708181	C	CTA	360	PASS	-	-	-	-	-	Ins	-	I	115708181	115708187	2	12	316.549	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	1	5	3	5	24	26	25	26	3	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745547251	6	133281165	CT	C	300	PASS	-	-	-	-	-	Del	-	D	133281165	133281175	1	10	269.21	-	-	9	1	1	-	-	./.	0	0	0	0	4	9	4	9	0	0	./.	1	4	1	4	31	29	31	29	1	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745547407	6	134027200	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	134027200	134027209	1	21	425.678	-	-	8	1	1	-	-	./.	0	0	0	0	12	12	12	13	0	0	./.	2	6	3	9	27	28	27	28	3	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745549505	6	140246689	CA	C	1349	PASS	-	-	-	-	-	Del	-	D	140246689	140246691	1	150	1239.33	-	-	1	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	9	14	14	18	28	34	28	34	14	18	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745552123	6	149925954	ATTTAT	A	1078	PASS	KATNA1	CCDS5217.1	r.?	-	-	Del	intronic	D	149925954	149925963	5	110	1023.48	-	-	1	1	1	KATNA1|CCDS5217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KATNA1|CCDS5217.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	10	9	9	10	29	34	30	35	10	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745553062	6	152249236	GTTTC	G	1018	PASS	ESR1	CCDS5234.1	r.?	-	-	Del	intronic	D	152249236	152249244	4	99	971.322	-	-	1	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	14	14	14	0	0	./.	10	8	13	10	37	33	37	33	13	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745553106	6	152389593	C	CA	389	PASS	ESR1	CCDS5234.1	r.?	-	-	Ins	intronic	I	152389593	152389594	1	8	372.318	-	-	0	1	1	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ESR1|CCDS5234.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	17	14	17	0	0	./.	0	7	4	11	18	25	18	25	4	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745553467	6	153169866	AGAAG	A	300	PASS	-	-	-	-	-	Del	-	D	153169866	153169876	4	12	269.812	-	-	2	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	3	2	2	3	23	27	23	27	3	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745559064	6	169135271	C	CT	627	PASS	-	-	-	-	-	Ins	-	I	169135271	169135278	1	49	638.517	-	-	6	1	1	-	-	./.	0	0	0	0	17	14	18	14	0	0	./.	6	6	6	8	26	40	26	40	6	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745560595	7	2354153	GC	G	360	PASS	SNX8	CCDS5331.1	r.?	-	-	Del	upstream	D	2354153	2354159	1	16	323.28	-	-	5	1	-	SNX8|CCDS5331.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SNX8|ENST00000435336|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	3	4	9	22	38	22	38	4	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745561773	7	4847617	CCTGT	C	358	PASS	RADIL	CCDS43544.1	r.?	-	-	Del	intronic	D	4847617	4847624	4	18	375.354	-	-	1	1	1	RADIL|CCDS43544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RADIL|CCDS43544.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	1	10	1	0	0	./.	5	2	11	4	23	11	23	11	11	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745563177	7	6934778	A	AAGAGAGAGAGGG	273	PASS	-	-	-	-	-	Ins	-	I	6934778	6934797	12	20	466.553	-	-	1	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	9	1	9	1	52	27	54	28	10	1	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745564912	7	11278542	AT	A	1318	PASS	-	-	-	-	-	Del	-	D	11278542	11278552	1	136	1235.63	-	-	9	1	1	-	-	./.	0	0	0	0	5	8	5	8	0	0	./.	16	7	22	15	36	30	36	30	22	15	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745565356	7	12528554	G	GGT	478	PASS	-	-	-	-	-	Ins	-	I	12528554	12528555	2	18	469.869	-	-	0	1	1	-	-	./.	0	0	0	0	14	7	14	7	0	0	./.	1	8	0	0	31	32	34	33	1	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745565640	7	13306068	CAG	C	420	PASS	-	-	-	-	-	Del	-	D	13306068	13306083	2	20	377.16	-	-	7	1	-	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	4	3	4	50	46	50	46	3	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745583078	7	56391391	TC	T	537	PASS	-	-	-	-	-	Del	-	D	56391391	56391393	1	30	482.512	-	-	1	1	-	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	4	5	6	6	39	24	39	24	6	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745585767	7	63875036	GACAA	G	809	PASS	-	-	-	-	-	Del	-	D	63875036	63875060	4	64	753.116	-	-	5	1	-	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	7	7	18	10	38	41	38	41	18	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745591270	7	73170137	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	73170137	73170145	1	32	532.779	-	-	7	1	-	-	-	./.	0	0	0	0	21	9	21	9	0	0	./.	7	3	10	8	56	39	56	39	10	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745596775	7	86983936	G	GA	300	PASS	CROT	CCDS5604.1	r.?	-	-	Ins	intronic	I	86983936	86983946	1	12	266.39	-	-	9	1	1	CROT|CCDS5604.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CROT|CCDS5604.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	3	2	3	2	39	36	40	38	3	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745598742	7	92689171	G	GT	1860	PASS	-	-	-	-	-	Ins	-	I	92689171	92689179	1	260	1651.62	-	-	7	1	1	-	-	./.	0	0	0	0	7	8	7	8	0	0	./.	19	12	25	16	49	40	51	40	25	16	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745601877	7	100189883	G	GA	300	PASS	FBXO24	CCDS5698.1	r.?	-	-	Ins	intronic	I	100189883	100189893	1	12	266.39	-	-	9	1	1	FBXO24|CCDS5698.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FBXO24|CCDS5698.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	3	2	4	2	37	40	37	40	4	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745604463	7	105116805	T	TTA	900	PASS	PUS7	CCDS34725.1	r.?	-	-	Ins	intronic	I	105116805	105116819	2	66	788.332	-	-	6	1	1	PUS7|CCDS34725.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PUS7|CCDS34725.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	3	13	3	0	0	./.	10	5	13	9	47	36	48	36	13	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745606774	7	111361935	A	AT	300	PASS	DOCK4	ENST00000348568	r.?	-	-	Ins	downstream	I	111361935	111361945	1	12	260.369	-	-	9	1	1	DOCK4|ENST00000348568|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	DOCK4|ENST00000348568|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	8	7	8	7	0	0	./.	3	2	2	4	31	47	32	47	3	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745607499	7	113604350	T	TA	300	PASS	PPP1R3A	ENST00000449795	r.?	-	-	Ins	intronic	I	113604350	113604360	1	12	266.39	-	-	9	1	1	PPP1R3A|ENST00000449795|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PPP1R3A|ENST00000449795|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	2	3	4	4	35	47	35	47	4	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745608062	7	115085811	GT	G	1020	PASS	-	-	-	-	-	Del	-	D	115085811	115085819	1	84	915.358	-	-	7	1	1	-	-	./.	0	0	0	0	3	9	3	9	0	0	./.	6	11	8	14	28	33	28	33	8	14	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745609882	7	120888651	A	AC	269	PASS	C7orf58	CCDS34739.1	r.?	-	-	Ins	intronic	I	120888651	120888652	1	6	259.767	-	-	0	1	1	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C7orf58|CCDS34739.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	0	5	0	42	32	43	32	6	0	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745610211	7	121769131	C	CA	300	PASS	AASS	CCDS5783.1	r.?	-	-	Ins	intronic	I	121769131	121769141	1	10	265.788	-	-	9	1	1	AASS|CCDS5783.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AASS|CCDS5783.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	1	4	2	5	19	55	19	56	2	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745612661	7	128169202	AT	A	300	PASS	-	-	-	-	-	Del	-	D	128169202	128169204	1	10	266.992	-	-	1	1	-	-	-	./.	0	0	0	0	3	11	3	11	0	0	./.	1	4	8	10	33	44	33	44	8	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745632177	8	14752474	C	CA	600	PASS	SGCZ	CCDS5992.2	r.?	-	-	Ins	intronic	I	14752474	14752482	1	32	532.825	-	-	7	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	7	6	8	25	26	26	26	6	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745632504	8	15648778	G	GC	389	PASS	-	-	-	-	-	Ins	-	I	15648778	15648787	1	20	373.64	-	-	8	1	1	-	-	./.	0	0	0	0	11	10	11	10	0	0	./.	4	3	6	5	27	30	28	30	6	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745634799	8	22047600	A	AT	360	PASS	BMP1	CCDS6026.1	r.?	-	-	Ins	intronic	I	22047600	22047610	1	15	317.769	-	-	9	1	1	BMP1|CCDS6026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BMP1|CCDS6026.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	4	2	4	2	28	26	28	26	4	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745638282	8	31184107	A	AT	720	PASS	-	-	-	-	-	Ins	-	I	31184107	31184114	1	40	639.752	-	-	6	1	1	-	-	./.	0	0	0	0	1	14	1	14	0	0	./.	3	9	3	9	6	24	6	25	3	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745638359	8	31464239	AG	A	300	PASS	-	-	-	-	-	Del	-	D	31464239	31464242	1	10	269.724	-	-	2	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	4	1	4	3	23	33	23	33	4	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745638430	8	31672253	G	GT	480	PASS	NRG1	CCDS47836.1	r.?	-	-	Ins	intronic	I	31672253	31672255	1	16	427.103	-	-	1	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	2	8	2	0	0	./.	7	1	8	3	16	3	17	3	8	3	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745643565	8	51540947	A	AT	840	PASS	SNTG1	CCDS6147.1	r.?	-	-	Ins	intronic	I	51540947	51540955	1	63	748.484	-	-	7	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	9	14	9	0	0	./.	8	6	13	8	26	23	26	23	13	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745644588	8	54710818	GCT	G	718	PASS	ATP6V1H	CCDS6153.1	r.?	-	-	Del	intronic	D	54710818	54710822	2	50	701.644	-	-	1	1	1	ATP6V1H|CCDS6153.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP6V1H|CCDS6153.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	10	19	10	0	0	./.	4	9	4	9	19	25	19	25	4	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745648385	8	68056214	GTTAAGAA	G	493	PASS	CSPP1	CCDS47870.1	r.?	-	-	Del	intronic	D	68056214	68056224	7	88	918.506	-	-	1	1	1	CSPP1|CCDS47870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSPP1|CCDS47870.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	10	7	10	8	28	28	28	29	10	9	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745648654	8	69004084	ATAAT	A	718	PASS	PREX2	CCDS6201.1	r.?	-	-	Del	intronic	D	69004084	69004092	4	44	696.827	-	-	1	1	1	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PREX2|CCDS6201.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	10	5	11	20	27	20	27	5	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745650902	8	75752578	CTA	C	840	PASS	PI15	CCDS6218.1	r.?	-	-	Del	intronic	D	75752578	75752584	2	60	756.311	-	-	2	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	5	9	7	14	23	29	23	29	7	14	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745663475	8	116685546	TGACATTGAA	T	377	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	upstream	D	116685546	116685558	9	54	697.429	-	-	1	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	TRPS1|ENST00000422939|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	13	5	13	0	0	./.	8	5	0	0	23	23	25	23	8	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745665192	8	122358650	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	122358650	122358659	1	16	320.779	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	3	3	4	7	31	26	32	26	4	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745671840	8	142982685	G	GGT	360	PASS	-	-	-	-	-	Ins	-	I	142982685	142982697	2	7	317.167	-	-	5	1	-	-	-	./.	0	0	0	0	16	12	18	12	0	0	./.	6	0	0	1	46	44	62	45	6	1	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745676653	9	11226373	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	11226373	11226382	1	18	481.667	-	-	8	1	1	-	-	./.	0	0	0	0	10	1	10	1	0	0	./.	8	1	10	2	25	9	25	9	10	2	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745679148	9	18887485	G	GA	600	PASS	ADAMTSL1	CCDS47954.1	r.?	-	-	Ins	intronic	I	18887485	18887493	1	36	534.583	-	-	7	1	1	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADAMTSL1|CCDS47954.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	14	15	14	0	0	./.	5	5	7	8	28	34	29	35	7	8	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745681214	9	25620499	CA	C	1529	PASS	-	-	-	-	-	Del	-	D	25620499	25620503	1	195	1404.73	-	-	3	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	14	12	16	14	32	32	32	32	16	14	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745690746	9	72555547	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	72555547	72555553	1	35	535.185	-	-	5	1	1	-	-	./.	0	0	0	0	11	16	12	16	0	0	./.	4	6	6	7	10	27	10	27	6	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745697444	9	91378436	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	91378436	91378456	2	16	321.713	-	-	9	1	-	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	2	4	29	28	29	28	3	4	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745702816	9	108749588	AATTTAT	A	348	PASS	-	-	-	-	-	Del	-	D	108749588	108749597	6	45	649.447	-	-	1	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	8	8	10	30	21	30	21	8	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745708224	9	124610569	C	CA	809	PASS	TTLL11	CCDS48012.1	r.?	-	-	Ins	intronic	I	124610569	124610577	1	60	749.26	-	-	7	1	1	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTLL11|CCDS48012.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	11	0	0	./.	9	5	15	7	43	28	43	29	15	7	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745712235	9	134657209	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	134657209	134657215	1	7	318.703	-	-	5	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	6	0	14	5	35	26	35	26	14	5	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745717577	X	23941775	CT	C	360	PASS	CXorf58	CCDS14209.1	r.?	-	-	Del	intronic	D	23941775	23941777	1	16	317.681	-	-	1	1	1	CXorf58|CCDS14209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CXorf58|CCDS14209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	3	3	7	12	16	17	16	17	7	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745721318	X	51270553	C	CA	1260	PASS	-	-	-	-	-	Ins	-	I	51270553	51270559	1	126	1130.25	-	-	5	1	1	-	-	./.	0	0	0	0	7	4	7	4	0	0	./.	13	8	14	12	20	16	20	16	14	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745722012	X	56791005	GCATCCTGTTGTGTTCAGA	G	551	PASS	-	-	-	-	-	Del	-	D	56791005	56791024	18	104	1032.78	-	-	1	1	1	-	-	./.	0	0	0	0	7	5	7	5	0	0	./.	7	12	6	10	8	15	9	17	7	12	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745724379	X	79143596	C	CA	900	PASS	-	-	-	-	-	Ins	-	I	79143596	79143605	1	72	802.933	-	-	8	1	1	-	-	./.	0	0	0	0	8	3	9	3	0	0	./.	8	7	8	10	15	13	16	13	8	10	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745725056	X	84619175	AT	A	600	PASS	POF1B	CCDS14452.1	r.?	-	-	Del	intronic	D	84619175	84619182	1	35	544.521	-	-	6	1	1	POF1B|CCDS14452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POF1B|CCDS14452.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	9	2	9	0	0	./.	6	4	9	6	13	13	13	13	9	6	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745729321	X	116251301	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	116251301	116251309	1	44	697.642	-	-	7	1	1	-	-	./.	0	0	0	0	7	6	7	6	0	0	./.	3	10	7	11	16	14	16	14	7	11	1	1	1	1	1	1	1	1
2731453	PD20347a	PD20347b	2745735062	Y	7084233	T	TCA	300	PASS	-	-	-	-	-	Ins	-	I	7084233	7084252	2	12	267.899	-	-	9	1	-	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	2	6	3	20	12	20	12	6	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746683497	1	1050524	C	CT	629	PASS	C1orf159	CCDS7.2	r.?	-	-	Ins	intronic	I	1050524	1050526	1	42	583.079	-	-	1	1	1	C1orf159|CCDS7.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C1orf159|CCDS7.2|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	6	5	7	6	28	47	29	47	7	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746690174	1	17040954	TG	T	269	PASS	-	-	-	-	-	Del	-	D	17040954	17040956	1	10	264.379	-	-	1	1	1	-	-	./.	0	0	0	0	23	19	23	19	0	0	./.	4	1	5	2	60	59	60	59	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746694565	1	27076825	AGTT	A	600	PASS	ARID1A	CCDS285.1	r.?	-	-	Del	intronic	D	27076825	27076834	3	35	536.585	-	-	2	1	1	ARID1A|CCDS285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID1A|CCDS285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	4	8	8	31	35	31	35	8	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746711373	1	74161664	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	74161664	74161671	1	7	318.7	-	-	6	1	1	-	-	./.	0	0	0	0	5	17	5	17	0	0	./.	0	6	1	6	12	32	12	32	1	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746715333	1	85678857	T	TTA	360	PASS	-	-	-	-	-	Ins	-	I	85678857	85678859	2	7	311.475	-	-	0	1	-	-	-	./.	0	0	0	0	1	10	1	10	0	0	./.	6	0	2	0	16	25	16	25	7	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746721947	1	104937248	A	AT	946	PASS	-	-	-	-	-	Ins	-	I	104937248	104937257	1	84	955.498	-	-	8	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	5	13	7	16	34	44	34	44	7	16	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746726509	1	118212565	TACAGATG	T	493	PASS	-	-	-	-	-	Del	-	D	118212565	118212575	7	78	913.218	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	12	5	13	7	30	23	31	23	14	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746732100	1	148854454	CGGCGGTGGGGCAAAAAGCAGCGGCGGT	C	252	PASS	-	-	-	-	-	Del	-	D	148854454	148854487	27	45	635.594	-	-	1	1	1	-	-	./.	0	0	0	0	16	26	16	26	0	0	./.	4	8	1	2	42	129	44	130	4	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746735024	1	154447667	C	CT	1680	PASS	SHE	CCDS30877.1	r.?	-	-	Ins	downstream	I	154447667	154447674	1	221	1472.21	-	-	6	1	1	SHE|CCDS30877.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SHE|CCDS30877.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	9	10	9	0	0	./.	12	16	17	18	56	45	56	45	17	18	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746741622	1	170277736	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	170277736	170277742	1	9	412.892	-	-	5	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	0	8	1	0	36	50	36	50	1	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746743582	1	175336584	CAATTTCACTATTTAGG	C	406	PASS	TNR	CCDS1318.1	r.?	-	-	Del	intronic	D	175336584	175336604	16	63	752.062	-	-	1	1	1	TNR|CCDS1318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNR|CCDS1318.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	8	6	7	45	40	45	41	6	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746747540	1	185031975	GA	G	1200	PASS	RNF2	CCDS1365.1	r.?	-	-	Del	intronic	D	185031975	185031980	1	120	1054.51	-	-	4	1	1	RNF2|CCDS1365.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RNF2|CCDS1365.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	9	11	13	13	39	40	39	40	14	13	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746748983	1	188715919	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	188715919	188715924	1	16	318.7	-	-	4	1	1	-	-	./.	0	0	0	0	7	12	10	13	0	0	./.	3	3	3	5	33	49	45	50	3	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746749634	1	190221904	TTTA	T	288	PASS	FAM5C	CCDS1373.1	r.?	-	-	Del	intronic	D	190221904	190221930	3	12	267.389	-	-	8	1	-	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM5C|CCDS1373.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	3	2	4	2	35	38	35	38	4	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746751557	1	195755798	TGAA	T	449	PASS	-	-	-	-	-	Del	-	D	195755798	195755807	3	24	429.75	-	-	2	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	3	5	4	5	29	30	29	30	4	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746755649	1	204749927	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	204749927	204749945	2	12	267.389	-	-	8	1	-	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	3	2	3	45	36	45	36	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746756956	1	208358093	TAC	T	300	PASS	PLXNA2	CCDS31013.1	r.?	-	-	Del	intronic	D	208358093	208358112	2	12	268.594	-	-	9	1	1	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXNA2|CCDS31013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	9	9	9	0	0	./.	3	2	5	2	49	41	49	41	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746759223	1	213348159	G	GT	569	PASS	RPS6KC1	CCDS1513.1	r.?	-	-	Ins	intronic	I	213348159	213348168	1	35	531.167	-	-	8	1	1	RPS6KC1|CCDS1513.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RPS6KC1|CCDS1513.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	6	4	8	5	50	41	50	41	8	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746759609	1	214431454	TAGACCTGCGA	T	841	PASS	-	-	-	-	-	Del	-	D	214431454	214431468	10	240	1551.82	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	15	14	0	0	48	29	50	30	15	14	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746759624	1	214461507	C	CA	480	PASS	SMYD2	CCDS31022.1	r.?	-	-	Ins	intronic	I	214461507	214461516	1	25	423.729	-	-	8	1	1	SMYD2|CCDS31022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMYD2|CCDS31022.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	12	11	12	0	0	./.	4	4	4	6	43	45	43	46	4	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746763427	1	223826079	GTA	G	300	PASS	CAPN8	ENST00000366873	r.?	-	-	Del	intronic	D	223826079	223826083	2	6	267.992	-	-	1	1	-	CAPN8|ENST00000366873|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CAPN8|ENST00000366873|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	0	5	1	6	22	51	22	51	1	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746763962	1	224606253	ATGCGATACGTGAGC	A	580	PASS	WDR26	CCDS31037.1	r.?	-	-	Del	intronic	D	224606253	224606269	14	121	1074.37	-	-	1	1	1	WDR26|CCDS31037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	WDR26|CCDS31037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	13	4	13	0	0	./.	10	10	10	8	45	36	45	38	10	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746765564	1	227690070	CA	C	322	PASS	-	-	-	-	-	Del	-	D	227690070	227690072	1	15	752.062	-	-	1	1	1	-	-	./.	0	0	0	0	2	11	2	11	0	0	./.	14	0	18	0	36	34	36	34	18	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746765878	1	228790110	TC	T	840	PASS	-	-	-	-	-	Del	-	D	228790110	228790114	1	48	749.654	-	-	3	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	11	3	12	5	53	44	53	44	12	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746770939	1	239856659	ATC	A	329	PASS	CHRM3	CCDS1616.1	r.?	-	-	Del	intronic	D	239856659	239856677	2	15	307.863	-	-	8	1	1	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	2	5	3	50	34	50	34	5	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746771050	1	240138589	A	AGAAC	420	PASS	-	-	-	-	-	Ins	-	I	240138589	240138591	4	14	358.571	-	-	0	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	6	1	0	0	32	25	40	29	6	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746774060	1	245991785	AT	A	360	PASS	SMYD3	CCDS31083.1	r.?	-	-	Del	intronic	D	245991785	245991795	1	15	321.108	-	-	9	1	1	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMYD3|CCDS31083.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	2	4	2	4	52	51	52	51	2	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746776841	10	2949413	T	TCT	356	PASS	-	-	-	-	-	Ins	-	I	2949409	2949415	2	10	470.553	-	-	2	1	-	-	-	./.	0	0	0	0	8	11	8	13	0	0	./.	0	9	1	0	49	80	49	91	1	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746778411	10	6270147	TCTC	T	509	PASS	PFKFB3	CCDS7078.1	r.?	-	-	Del	intronic	D	6270147	6270155	3	30	480.788	-	-	2	1	1	PFKFB3|CCDS7078.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PFKFB3|ENST00000379785|r.1911-11_1911-9delcuc|c.1516-11_1516-9delctc|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	11	11	11	11	0	0	./.	4	5	4	5	30	33	30	33	4	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746786292	10	23328892	G	GA	300	PASS	ARMC3	CCDS7142.1	r.?	-	-	Ins	downstream	I	23328892	23328902	1	12	265.833	-	-	9	1	1	ARMC3|CCDS7142.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ARMC3|CCDS7142.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	13	13	13	13	0	0	./.	2	3	2	3	52	36	54	36	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746790508	10	32435823	A	AT	269	PASS	-	-	-	-	-	Ins	-	I	32435823	32435833	1	12	266.436	-	-	9	1	1	-	-	./.	0	0	0	0	11	17	11	18	0	0	./.	2	3	2	3	49	38	51	38	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746793107	10	38420118	C	CA	1140	PASS	-	-	-	-	-	Ins	-	I	38420118	38420125	1	110	1007.64	-	-	6	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	9	10	11	14	39	38	39	38	11	14	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746796335	10	45546626	A	AA	538	PASS	-	-	-	-	-	Ins	-	I	45546624	45546627	1	27	529.861	-	-	2	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	2	8	1	1	21	44	22	46	3	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746808676	10	77326869	TTC	T	420	PASS	C10orf11	ENST00000354343	r.?	-	-	Del	intronic	D	77326869	77326887	2	18	372.408	-	-	8	1	1	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C10orf11|ENST00000354343|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	19	15	19	0	0	./.	2	5	4	5	43	40	43	40	4	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746810506	10	82469721	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	82469721	82469730	1	12	266.436	-	-	8	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	3	2	3	2	31	28	33	28	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746815951	10	97206917	C	CA	300	PASS	SORBS1	CCDS31255.1	r.?	-	-	Ins	intronic	I	97206917	97206927	1	10	254.996	-	-	9	1	-	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SORBS1|CCDS31255.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	11	9	11	0	0	./.	4	1	4	1	48	45	48	45	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746816126	10	97596430	AAT	A	660	PASS	ENTPD1	CCDS7444.1	r.?	-	-	Del	intronic	D	97596430	97596433	2	36	584.954	-	-	1	1	1	ENTPD1|CCDS7444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENTPD1|CCDS7444.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	8	3	12	3	35	22	35	22	12	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746822404	10	112785049	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	112785049	112785051	1	24	425.695	-	-	1	1	1	-	-	./.	0	0	0	0	13	10	13	10	0	0	./.	3	5	5	6	31	41	31	42	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746823756	10	116562584	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	116562584	116562594	1	12	266.436	-	-	9	1	-	-	-	./.	0	0	0	0	17	13	17	13	0	0	./.	2	3	2	3	41	57	42	58	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746830969	10	134241322	A	AATCACCATCATCATAACACAATCACCATT	261	PASS	ENSG00000197735	ENST00000354756	r.?	-	-	Ins	intronic	I	134241322	134241333	29	28	327.865	-	-	0	1	-	ENSG00000197735|ENST00000354756|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENSG00000197735|ENST00000354756|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	11	11	0	0	./.	3	6	0	0	50	49	52	51	3	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746835443	11	9763834	A	AT	869	PASS	SWAP70	CCDS31426.1	r.?	-	-	Ins	intronic	I	9763834	9763844	1	60	798.586	-	-	9	1	1	SWAP70|CCDS31426.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SWAP70|CCDS31426.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	4	6	4	0	0	./.	11	4	15	5	38	17	40	18	15	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746836585	11	12626971	CA	C	900	PASS	-	-	-	-	-	Del	-	D	12626971	12626973	1	60	810.026	-	-	1	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	11	4	15	7	39	22	39	22	15	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746849467	11	47874597	CTG	C	420	PASS	NUP160	CCDS31484.1	r.?	-	-	Del	upstream	D	47874597	47874601	2	14	376.808	-	-	1	1	1	NUP160|CCDS31484.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	NUP160|CCDS31484.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	17	6	17	6	0	0	./.	6	1	6	1	58	13	58	13	6	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746854697	11	65517707	TTG	T	300	PASS	-	-	-	-	-	Del	-	D	65517707	65517723	2	10	270.008	-	-	7	1	1	-	-	./.	0	0	0	0	14	5	14	5	0	0	./.	1	4	1	4	42	44	42	44	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746861129	11	81380481	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	81380481	81380488	1	18	373.797	-	-	6	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	5	2	6	2	24	32	25	32	6	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746862154	11	84013999	GAC	G	300	PASS	DLG2	CCDS41696.1	r.?	-	-	Del	intronic	D	84013999	84014016	2	10	270.008	-	-	8	1	-	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG2|CCDS41696.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	4	21	4	0	0	./.	4	1	4	1	27	35	27	35	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746863373	11	87211126	T	TT	297	PASS	-	-	-	-	-	Ins	-	I	87211125	87211127	1	10	266.998	-	-	1	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	4	1	1	1	42	40	42	40	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746864944	11	91467352	A	AG	420	PASS	-	-	-	-	-	Ins	-	I	91467352	91467353	1	20	373.797	-	-	0	1	1	-	-	./.	0	0	0	0	12	11	12	11	0	0	./.	4	3	4	3	36	30	36	31	4	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746866228	11	95379157	TTC	T	300	PASS	-	-	-	-	-	Del	-	D	95379157	95379177	2	12	270.008	-	-	9	1	-	-	-	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	3	2	28	33	28	33	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746870522	11	106337885	T	TGG	360	PASS	-	-	-	-	-	Ins	-	I	106337885	106337892	2	7	313.775	-	-	6	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	6	0	9	0	30	19	30	20	9	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746872668	11	112096660	GGGCT	G	348	PASS	PTS	CCDS8359.1	r.?	-	-	Del	upstream	D	112096660	112096666	4	49	639.592	-	-	1	1	1	PTS|CCDS8359.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PTS|CCDS8359.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	8	14	8	0	0	./.	6	6	8	8	41	28	41	28	8	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746874819	11	117760068	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	117760068	117760069	1	12	263.386	-	-	0	1	1	-	-	./.	0	0	0	0	12	7	13	7	0	0	./.	3	2	4	2	29	32	30	32	4	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746874862	11	117911366	AC	A	300	PASS	-	-	-	-	-	Del	-	D	117911366	117911368	1	10	269.406	-	-	1	1	1	-	-	./.	0	0	0	0	5	7	5	7	0	0	./.	1	4	1	5	18	32	18	32	1	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746892371	12	26365680	AG	A	1020	PASS	SSPN	CCDS8707.1	r.?	-	-	Del	intronic	D	26365680	26365682	1	88	914.449	-	-	1	1	1	SSPN|CCDS8707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SSPN|CCDS8707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	7	10	9	15	25	36	25	36	9	15	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746892530	12	26774968	TTAAC	T	447	PASS	ITPR2	CCDS41764.1	r.?	-	-	Del	intronic	D	26774968	26774976	4	28	486.351	-	-	1	1	1	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR2|CCDS41764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	6	3	7	4	33	31	33	31	7	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746896550	12	39124051	G	GA	480	PASS	CPNE8	CCDS8733.1	r.?	-	-	Ins	intronic	I	39124051	39124059	1	24	427.496	-	-	7	1	1	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CPNE8|CCDS8733.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	5	3	7	15	32	16	32	3	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746907052	12	68384261	GT	G	480	PASS	-	-	-	-	-	Del	-	D	68384261	68384266	1	21	432.312	-	-	4	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	2	6	2	6	23	39	23	39	2	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746913455	12	88504485	C	CA	540	PASS	CEP290	ENST00000309041	r.?	-	-	Ins	intronic	I	88504485	88504495	1	24	479.729	-	-	9	1	1	CEP290|ENST00000309041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CEP290|ENST00000309041|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	2	7	5	8	29	44	29	45	5	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746933675	13	22789194	CAA	C	269	PASS	AL137248.1	ENST00000413646	r.?	-	-	Del	intronic	D	22789194	22789204	2	12	266.913	-	-	9	1	-	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL137248.1|ENST00000413646|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	1	0	49	43	49	43	4	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746936413	13	28428729	AT	A	480	PASS	AL390738.2	ENST00000499662	r.?	-	-	Del	intronic	D	28428729	28428735	1	24	430.432	-	-	5	1	1	AL390738.2|ENST00000499662|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AL390738.2|ENST00000499662|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	3	8	6	28	28	28	28	8	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746938505	13	33253234	TA	T	300	PASS	PDS5B	CCDS41878.1	r.?	-	-	Del	intronic	D	33253234	33253239	1	12	260.29	-	-	4	1	1	PDS5B|CCDS41878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDS5B|CCDS41878.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	5	8	5	0	0	./.	2	3	5	4	35	28	35	28	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746945957	13	51747515	AAAC	A	369	PASS	-	-	-	-	-	Del	-	D	51747515	51747525	3	14	703.366	-	-	3	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	13	0	13	0	44	18	45	18	14	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746947993	13	57685385	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	57685385	57685405	2	10	270.525	-	-	9	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	4	1	5	1	46	45	46	45	5	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746951836	13	67669192	G	GT	300	PASS	PCDH9	CCDS9443.1	r.?	-	-	Ins	intronic	I	67669192	67669202	1	10	267.515	-	-	9	1	1	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PCDH9|CCDS9443.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	13	16	13	0	0	./.	1	4	1	4	28	53	28	54	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746952103	13	68374508	TC	T	569	PASS	-	-	-	-	-	Del	-	D	68374508	68374514	1	32	541.051	-	-	5	1	1	-	-	./.	0	0	0	0	15	6	15	6	0	0	./.	3	7	4	7	28	29	28	29	4	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746954379	13	73943422	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	73943422	73943431	1	12	266.913	-	-	8	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	3	2	5	2	41	26	41	27	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746955930	13	77832498	CTTT	C	569	PASS	MYCBP2	CCDS31994.1	r.?	-	-	Del	intronic	D	77832498	77832502	3	35	539.245	-	-	3	1	1	MYCBP2|CCDS31994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYCBP2|CCDS31994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	10	7	10	0	0	./.	4	6	7	6	32	34	32	34	7	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746958478	13	84960637	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	84960637	84960641	2	10	270.525	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	4	1	5	4	48	27	48	27	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746959602	13	87994756	TTTTATTTG	T	464	PASS	-	-	-	-	-	Del	-	D	87994756	87994776	8	81	865.079	-	-	2	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	8	8	9	11	30	35	30	35	9	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746960260	13	89810176	GAT	G	780	PASS	-	-	-	-	-	Del	-	D	89810176	89810186	2	56	703.366	-	-	4	1	1	-	-	./.	0	0	0	0	8	13	8	13	0	0	./.	6	7	10	9	38	42	38	42	10	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746960445	13	90207814	GA	G	840	PASS	-	-	-	-	-	Del	-	D	90207814	90207821	1	64	757.471	-	-	6	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	7	7	7	12	26	31	26	31	7	12	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746961394	13	92670276	TAC	T	300	PASS	GPC5	CCDS9468.1	r.?	-	-	Del	intronic	D	92670276	92670290	2	12	270.525	-	-	6	1	-	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPC5|CCDS9468.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	3	44	35	44	35	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746968894	13	111426408	TCAAAC	T	354	PASS	-	-	-	-	-	Del	-	D	111426408	111426414	5	28	483.333	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	6	7	5	26	25	26	26	7	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746977563	14	37620224	TTC	T	300	PASS	SLC25A21	CCDS9663.1	r.?	-	-	Del	intronic	D	37620224	37620244	2	10	270.13	-	-	9	1	-	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC25A21|CCDS9663.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	1	3	1	48	28	48	28	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746978585	14	40113414	G	GGA	747	PASS	-	-	-	-	-	Ins	-	I	40113414	40113415	2	39	735.772	-	-	0	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	2	12	0	1	30	36	30	37	2	13	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746984197	14	53935016	TG	T	300	PASS	-	-	-	-	-	Del	-	D	53935016	53935018	1	10	267.721	-	-	1	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	1	4	1	4	50	42	50	42	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746984546	14	54957953	A	AT	480	PASS	GMFB	CCDS9718.1	r.?	-	-	Ins	upstream	I	54957953	54957960	1	25	428.354	-	-	6	1	1	GMFB|CCDS9718.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	GMFB|CCDS9718.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	13	9	13	9	0	0	./.	4	4	8	5	57	27	59	29	8	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746986529	14	59594511	ATCTAACCCTTAGGTC	A	261	PASS	-	-	-	-	-	Del	-	D	59594511	59594531	15	30	487.317	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	5	4	3	5	31	39	33	39	5	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746987819	14	63016821	GAAC	G	269	PASS	-	-	-	-	-	Del	-	D	63016821	63016845	3	10	270.13	-	-	7	1	-	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	1	4	1	5	36	40	36	40	1	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746988217	14	64020414	G	GT	360	PASS	-	-	-	-	-	Ins	-	I	64020414	64020422	1	16	321.266	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	3	3	5	7	45	43	46	43	5	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746988692	14	64842127	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	64842127	64842137	1	10	267.119	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	7	0	0	./.	1	4	2	4	44	38	44	38	2	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746995138	14	79167139	C	CT	300	PASS	NRXN3	CCDS9870.1	r.?	-	-	Ins	intronic	I	79167139	79167149	1	6	265.313	-	-	9	1	-	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NRXN3|CCDS9870.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	5	0	7	2	48	23	48	23	7	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746997740	14	86437921	CT	C	360	PASS	-	-	-	-	-	Del	-	D	86437921	86437927	1	15	324.878	-	-	5	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	2	5	6	31	43	31	43	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2746998889	14	89724410	TAC	T	300	PASS	FOXN3	CCDS32138.1	r.?	-	-	Del	intronic	D	89724410	89724427	2	12	270.732	-	-	8	1	1	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXN3|CCDS32138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	4	8	4	0	0	./.	3	2	3	3	58	32	58	32	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747001434	14	95050847	CGG	C	600	PASS	SERPINA5	CCDS9928.1	r.?	-	-	Del	intronic	D	95050847	95050850	2	27	538.453	-	-	2	1	1	SERPINA5|CCDS9928.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SERPINA5|CCDS9928.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	14	2	14	0	0	./.	8	2	10	4	35	35	35	35	10	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747002509	14	97593857	GAGGA	G	360	PASS	-	-	-	-	-	Del	-	D	97593857	97593880	4	12	322.47	-	-	5	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	1	5	9	11	33	27	33	27	9	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747004590	14	102785377	TAAG	T	569	PASS	ZNF839	CCDS45164.1	r.?	-	-	Del	upstream	D	102785377	102785384	3	35	540.259	-	-	2	1	1	ZNF839|CCDS45164.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ZNF839|CCDS45164.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	10	12	10	12	0	0	./.	4	6	5	6	49	52	49	52	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747013008	15	36589475	C	CT	360	PASS	-	-	-	-	-	Ins	-	I	36589475	36589481	1	12	322.21	-	-	5	1	1	-	-	./.	0	0	0	0	15	21	15	21	0	0	./.	5	1	7	2	28	25	29	25	7	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747025910	15	74185035	TCCC	T	538	PASS	TBC1D21	CCDS10252.1	r.?	-	-	Del	downstream	D	74185035	74185039	3	35	536.415	-	-	3	1	1	TBC1D21|CCDS10252.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TBC1D21|CCDS10252.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	14	9	14	9	0	0	./.	6	4	6	4	18	18	18	18	6	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747032447	15	94567739	C	CA	480	PASS	-	-	-	-	-	Ins	-	I	94567739	94567746	1	25	429.614	-	-	6	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	4	4	7	5	28	30	29	31	7	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747032728	15	95325179	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	95325179	95325186	1	12	266.702	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	3	2	3	6	24	23	24	25	3	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747035442	16	430369	TTTC	T	501	PASS	TMEM8A	CCDS10407.1	r.?	-	-	Del	intronic	D	430369	430375	3	56	689.233	-	-	1	1	-	TMEM8A|CCDS10407.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TMEM8A|CCDS10407.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	6	7	0	0	37	39	39	39	6	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747040480	16	10733984	C	CTTCCTCCTCCCCCT	348	PASS	TEKT5	CCDS10542.1	r.?	-	-	Ins	intronic	I	10733984	10734002	14	33	526.687	-	-	1	1	1	TEKT5|CCDS10542.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TEKT5|CCDS10542.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	4	6	4	0	0	./.	2	10	3	7	29	31	30	32	3	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747046773	16	24556824	ATTTTC	A	290	PASS	RBBP6	CCDS10621.1	r.?	-	-	Del	intronic	D	24556824	24556832	5	35	539.951	-	-	1	1	1	RBBP6|CCDS10621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBBP6|CCDS10621.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	6	4	12	5	43	32	43	32	12	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747055133	16	51381813	C	CAT	300	PASS	-	-	-	-	-	Ins	-	I	51381813	51381825	2	10	264.858	-	-	5	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	1	4	5	12	32	41	32	41	5	12	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747060681	16	67383350	T	TA	300	PASS	LRRC36	CCDS32467.1	r.?	-	-	Ins	intronic	I	67383350	67383352	1	12	267.868	-	-	1	1	1	LRRC36|CCDS32467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRC36|CCDS32467.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	12	10	0	0	./.	3	2	3	2	15	22	17	22	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747060726	16	67596824	ACGCC	A	267	PASS	CTCF	CCDS10841.1	r.?	-	-	Del	intronic	D	67596824	67596848	4	7	313.615	-	-	5	1	-	CTCF|CCDS10841.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CTCF|CCDS10841.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	0	6	1	10	16	32	16	32	1	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747077405	17	17287411	GGTTGCT	G	537	PASS	-	-	-	-	-	Del	-	D	17287411	17287418	6	108	1027.17	-	-	1	1	1	-	-	./.	0	0	0	0	11	21	11	21	0	0	./.	8	11	9	17	34	45	35	46	10	18	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747090839	17	47664179	ATTC	A	689	PASS	NXPH3	ENST00000513748	r.?	-	-	Del	downstream	D	47664179	47664186	3	48	645.668	-	-	2	1	1	NXPH3|ENST00000513748|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	NXPH3|ENST00000513748|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	10	7	10	0	0	./.	7	5	9	7	37	40	37	40	9	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747092861	17	52967841	T	TTG	300	PASS	-	-	-	-	-	Ins	-	I	52967841	52967845	2	12	264.764	-	-	1	1	1	-	-	./.	0	0	0	0	7	19	7	19	0	0	./.	2	3	3	4	34	49	34	49	3	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747093850	17	55626259	TC	T	360	PASS	MSI2	CCDS11597.1	r.?	-	-	Del	intronic	D	55626259	55626269	1	7	322.533	-	-	9	1	1	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MSI2|CCDS11597.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	1	10	1	10	0	0	./.	0	6	0	18	11	33	11	33	0	18	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747101234	17	71472758	A	AT	420	PASS	SDK2	CCDS45769.1	r.?	-	-	Ins	intronic	I	71472758	71472767	1	20	374.884	-	-	8	1	1	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	19	11	20	0	0	./.	3	4	5	6	52	50	52	50	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747101267	17	71602098	G	GT	300	PASS	SDK2	CCDS45769.1	r.?	-	-	Ins	intronic	I	71602098	71602105	1	12	265.968	-	-	6	1	1	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDK2|CCDS45769.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	17	7	17	0	0	./.	2	3	3	6	26	30	27	31	3	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747107263	18	1963682	TTCTC	T	447	PASS	-	-	-	-	-	Del	-	D	1963682	1963688	4	28	487.669	-	-	2	1	1	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	6	3	7	5	30	20	31	20	8	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747108191	18	3634289	C	CT	780	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Ins	intronic	I	3634289	3634296	1	50	696.584	-	-	6	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	9	4	10	5	43	32	45	32	10	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747109570	18	7295214	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	7295214	7295224	1	12	266.713	-	-	9	1	1	-	-	./.	0	0	0	0	13	17	14	17	0	0	./.	2	3	2	3	36	46	36	46	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747117983	18	30249380	G	GA	300	PASS	KLHL14	CCDS32813.1	r.?	-	-	Ins	downstream	I	30249380	30249390	1	12	264.907	-	-	9	1	1	KLHL14|CCDS32813.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	KLHL14|CCDS32813.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	3	14	3	15	0	0	./.	2	3	2	3	46	45	46	46	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747120966	18	39457065	TGCC	T	927	PASS	-	-	-	-	-	Del	-	D	39457065	39457069	3	88	916.336	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	10	7	11	8	39	31	40	31	12	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747124165	18	48495732	AC	A	540	PASS	ELAC1	CCDS11949.1	r.?	-	-	Del	intronic	D	48495732	48495735	1	24	487.067	-	-	2	1	1	ELAC1|CCDS11949.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ELAC1|CCDS11949.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	8	13	8	0	0	./.	2	7	4	10	33	41	33	41	4	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747124255	18	48692340	A	AAT	269	PASS	-	-	-	-	-	Ins	-	I	48692340	48692341	2	10	253.467	-	-	0	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	0	0	40	32	40	32	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747133270	18	71661811	AG	A	1018	PASS	-	-	-	-	-	Del	-	D	71661811	71661813	1	99	969.317	-	-	1	1	1	-	-	./.	0	0	0	0	13	8	13	8	0	0	./.	10	8	11	11	29	33	29	33	11	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747138964	19	5949327	GC	G	1200	PASS	RANBP3	CCDS42478.1	r.?	-	-	Del	intronic	D	5949327	5949330	1	120	1083.95	-	-	2	1	1	RANBP3|CCDS42478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RANBP3|CCDS42478.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	9	11	10	14	34	51	34	51	10	14	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747139835	19	7292103	C	CCT	329	PASS	INSR	CCDS12176.1	r.?	-	-	Ins	intronic	I	7292103	7292104	2	12	310.133	-	-	0	1	1	INSR|CCDS12176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	INSR|CCDS12176.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	5	0	1	22	35	22	35	1	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747146148	19	17880047	G	GCAC	412	PASS	FCHO1	CCDS32955.1	r.?	-	-	Ins	intronic	I	17880047	17880051	3	24	414.314	-	-	1	1	1	FCHO1|CCDS32955.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FCHO1|CCDS32955.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	3	5	4	7	17	27	17	27	4	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747149233	19	23403729	AC	A	300	PASS	ZNF724P	ENST00000418100	r.?	-	-	Del	downstream	D	23403729	23403731	1	6	254.13	-	-	1	1	-	ZNF724P|ENST00000418100|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ZNF724P|ENST00000418100|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	14	12	14	0	0	./.	5	0	13	0	52	24	52	24	13	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747152711	19	33807828	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	33807828	33807838	1	12	267.977	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	9	9	0	0	./.	3	2	3	2	46	44	48	44	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747156166	19	40023604	AGTAGCCATTACGTCT	A	522	PASS	EID2B	CCDS12539.1	r.?	-	-	Del	upstream	D	40023604	40023626	15	100	974.953	-	-	1	1	1	EID2B|CCDS12539.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	EID2B|CCDS12539.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	9	7	9	0	0	./.	9	9	9	8	42	48	42	50	9	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747157331	19	42319858	T	TG	600	PASS	CEACAM5	CCDS12584.1	r.?	-	-	Ins	intronic	I	42319858	42319859	1	36	526.321	-	-	0	1	-	CEACAM5|CCDS12584.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	CEACAM5|CCDS12584.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	14	16	15	0	0	./.	5	5	10	10	34	39	35	39	10	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747158308	19	44813382	CA	C	281	PASS	ZNF235	CCDS33048.1	r.?	-	-	Del	upstream	D	44813382	44813386	1	13	649.166	-	-	3	1	1	ZNF235|CCDS33048.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ZNF235|ENST00000391957|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	27	7	27	0	0	./.	12	0	0	1	27	69	39	69	12	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747164856	19	55642227	T	TGC	478	PASS	TNNT1	CCDS12917.1	r.?	-	-	Ins	downstream	I	55642227	55642229	2	24	475.134	-	-	0	1	-	TNNT1|CCDS12917.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	TNNT1|CCDS12917.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	4	7	4	7	0	0	./.	7	2	11	4	32	28	32	28	11	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747173773	2	20681093	AG	A	300	PASS	-	-	-	-	-	Del	-	D	20681093	20681095	1	10	268.944	-	-	1	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	4	1	4	1	42	27	42	27	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747175125	2	25041098	CA	C	689	PASS	ADCY3	CCDS1715.1	r.?	-	-	Del	downstream	D	25041098	25041104	1	45	645.466	-	-	5	1	1	ADCY3|CCDS1715.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CENPO|CCDS1714.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	8	4	9	5	40	36	40	36	9	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747187352	2	57161252	AAGGCTTCTGTTC	A	261	PASS	-	-	-	-	-	Del	-	D	57161252	57161267	12	28	480.487	-	-	1	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	6	3	6	3	37	23	37	23	6	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747188621	2	61456601	A	AC	300	PASS	USP34	CCDS42686.1	r.?	-	-	Ins	intronic	I	61456601	61456602	1	12	256.301	-	-	0	1	-	USP34|CCDS42686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USP34|CCDS42686.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	2	3	11	6	27	17	28	17	11	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747193461	2	74629188	AAGAG	A	269	PASS	-	-	-	-	-	Del	-	D	74629188	74629204	4	6	241.249	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	0	5	2	5	20	21	20	21	2	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747196466	2	84464868	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	84464868	84464872	1	50	690.224	-	-	3	1	1	-	-	./.	0	0	0	0	11	8	11	8	0	0	./.	4	9	7	12	21	29	21	29	7	12	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747208526	2	122168112	G	GA	300	PASS	CLASP1	ENST00000263710	r.?	-	-	Ins	intronic	I	122168112	122168122	1	12	258.709	-	-	9	1	1	CLASP1|ENST00000263710|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CLASP1|ENST00000263710|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	4	4	44	30	45	32	4	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747208706	2	122800888	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	122800888	122800898	1	20	369.899	-	-	9	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	4	3	4	3	40	31	40	31	4	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747221960	2	160438238	GA	G	398	PASS	BAZ2B	CCDS2209.2	r.?	-	-	Del	intronic	D	160438238	160438241	1	45	645.466	-	-	2	1	1	BAZ2B|CCDS2209.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	BAZ2B|CCDS2209.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	4	8	5	9	34	29	34	29	5	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747227492	2	175810659	G	GTA	300	PASS	CHN1	CCDS46455.1	r.?	-	-	Ins	intronic	I	175810659	175810672	2	12	262.321	-	-	6	1	-	CHN1|CCDS46455.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHN1|CCDS46455.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	2	1	0	26	23	26	23	4	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747231139	2	187139643	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	187139643	187139653	1	12	264.73	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	15	0	0	./.	2	3	2	3	43	29	44	30	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747231933	2	189440730	TAC	T	300	PASS	GULP1	CCDS2295.1	r.?	-	-	Del	intronic	D	189440730	189440748	2	10	268.342	-	-	8	1	1	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GULP1|CCDS2295.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	9	12	9	0	0	./.	1	4	1	4	23	29	23	29	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747232088	2	189981130	AAT	A	1618	PASS	COL5A2	CCDS33350.1	r.?	-	-	Del	intronic	D	189981130	189981133	2	200	1501.27	-	-	1	1	1	COL5A2|CCDS33350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	COL5A2|CCDS33350.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	9	19	9	21	32	54	32	54	9	21	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747232757	2	191876983	CA	C	300	PASS	STAT1	CCDS2309.1	r.?	-	-	Del	intronic	D	191876983	191876993	1	12	268.342	-	-	9	1	1	STAT1|CCDS2309.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	STAT1|CCDS2309.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	16	10	16	0	0	./.	2	3	2	3	30	22	30	22	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747235661	2	200715842	TCGCCGCCGCGCGTGGCCCGCGCGCAGCCTC	T	290	PASS	-	-	-	-	-	Del	-	D	200715842	200715900	30	35	522.837	-	-	1	1	1	-	-	./.	0	0	0	0	5	10	5	10	0	0	./.	4	6	3	1	28	23	29	28	4	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747238648	2	208362945	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	208362945	208362947	1	12	265.934	-	-	1	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	3	3	3	28	17	28	18	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747239159	2	209404194	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	209404194	209404211	2	10	268.944	-	-	8	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	4	1	4	1	34	29	34	29	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747252182	20	1952713	CT	C	629	PASS	-	-	-	-	-	Del	-	D	1952713	1952718	1	42	596.161	-	-	4	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	5	6	8	6	38	47	38	47	8	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747255699	20	10162992	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	10162992	10163002	1	35	537.039	-	-	9	1	1	-	-	./.	0	0	0	0	8	6	9	6	0	0	./.	6	4	9	9	38	35	38	35	9	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747265211	20	34224966	AAAAAC	A	480	PASS	CPNE1	CCDS13260.1	r.?	-	-	Del	intronic	D	34224966	34224979	5	24	434.448	-	-	2	1	1	CPNE1|CCDS13260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CPNE1|CCDS13260.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	5	3	7	4	34	37	34	37	7	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747267707	20	40867350	GTTC	G	720	PASS	PTPRT	CCDS42874.1	r.?	-	-	Del	intronic	D	40867350	40867363	3	48	649.865	-	-	4	1	1	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRT|CCDS42874.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	7	5	7	5	35	35	35	35	7	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747268131	20	42157738	TTC	T	360	PASS	L3MBTL	CCDS46602.1	r.?	-	-	Del	intronic	D	42157738	42157756	2	12	324.632	-	-	8	1	1	L3MBTL|CCDS46602.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	L3MBTL|CCDS46602.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	1	5	1	5	40	48	40	48	1	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747268326	20	42556334	C	CCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCCTTCCCCTT	420	PASS	TOX2	CCDS13324.1	r.?	-	-	Ins	intronic	I	42556334	42556347	39	20	208.555	-	-	0	1	-	TOX2|CCDS13324.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	TOX2|CCDS13324.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	4	3	0	0	28	26	28	26	4	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747269353	20	45438127	C	CA	600	PASS	-	-	-	-	-	Ins	-	I	45438127	45438136	1	27	536.437	-	-	8	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	8	2	11	4	50	38	51	38	11	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747272882	20	52518120	C	CT	480	PASS	-	-	-	-	-	Ins	-	I	52518120	52518128	1	25	429.631	-	-	7	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	4	8	5	52	37	52	38	8	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747274348	20	55902969	TC	T	898	PASS	SPO11	CCDS13456.1	r.?	-	-	Del	upstream	D	55902969	55902974	1	77	841.802	-	-	4	1	1	SPO11|CCDS13456.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SPO11|CCDS13456.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	7	11	7	11	0	0	./.	6	10	11	18	34	42	34	42	11	18	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747281752	21	16126004	GTC	G	358	PASS	-	-	-	-	-	Del	-	D	16126004	16126010	2	20	380.561	-	-	2	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	3	4	6	5	34	37	34	37	6	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747286044	21	27377465	A	AC	420	PASS	APP	CCDS33523.1	r.?	-	-	Ins	intronic	I	27377465	27377466	1	14	376.346	-	-	0	1	1	APP|CCDS33523.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	APP|CCDS33523.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	6	1	6	3	33	26	33	26	6	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747290852	21	38924839	CAGGGAAAACACCATAAG	C	319	PASS	-	-	-	-	-	Del	-	D	38924839	38924860	17	40	596.218	-	-	1	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	7	4	7	36	41	36	41	4	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747303363	22	35768989	C	CATTATTATT	290	PASS	-	-	-	-	-	Ins	-	I	35768989	35769014	9	27	491.293	-	-	8	1	-	-	-	./.	0	0	0	0	10	7	11	7	0	0	./.	8	2	8	1	46	32	48	33	9	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747304661	22	38610836	GCCCCGCCCACGGCCCGGA	G	435	PASS	MAFF	CCDS13968.1	r.809_826del18	c.447_464del18	p.D155_P160delDPAHGP	Del	inframe	D	38610836	38610872	18	70	802.564	-	-	1	1	1	MAFF|CCDS13968.1|r.809_826del18|c.447_464del18|p.D155_P160delDPAHGP|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	MAFF|CCDS13968.1|r.809_826del18|c.447_464del18|p.D155_P160delDPAHGP|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	7	8	7	8	0	0	./.	6	9	6	10	30	24	31	24	7	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747308438	22	47719340	GAC	G	360	PASS	-	-	-	-	-	Del	-	D	47719340	47719358	2	15	324.879	-	-	8	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	2	4	2	4	19	35	19	35	2	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747309288	22	49763992	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	49763992	49764000	1	10	269.127	-	-	7	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	1	4	1	4	31	38	31	39	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747315595	3	13490578	T	TTTTA	480	PASS	-	-	-	-	-	Ins	-	I	13490578	13490599	4	25	409.228	-	-	5	1	-	-	-	./.	0	0	0	0	11	2	11	2	0	0	./.	4	4	6	4	43	30	44	30	6	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747322112	3	31200135	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	31200135	31200141	1	15	316.704	-	-	5	1	1	-	-	./.	0	0	0	0	17	8	17	8	0	0	./.	4	2	5	5	33	34	33	35	5	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747323947	3	36338081	GA	G	1140	PASS	-	-	-	-	-	Del	-	D	36338081	36338089	1	104	1021.96	-	-	7	1	1	-	-	./.	0	0	0	0	11	15	11	15	0	0	./.	7	12	7	13	27	41	27	41	7	13	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747324479	3	37652523	CA	C	300	PASS	ITGA9	CCDS2669.1	r.?	-	-	Del	intronic	D	37652523	37652533	1	12	268.938	-	-	9	1	1	ITGA9|CCDS2669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA9|CCDS2669.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	2	3	2	3	32	44	32	44	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747330057	3	51883733	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	51883733	51883742	1	30	478.669	-	-	8	1	1	-	-	./.	0	0	0	0	11	8	12	8	0	0	./.	5	4	5	4	47	33	47	33	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747346161	3	94847360	ATG	A	300	PASS	-	-	-	-	-	Del	-	D	94847360	94847378	2	12	268.335	-	-	8	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	3	4	36	43	36	43	3	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747347203	3	97843053	CA	C	300	PASS	-	-	-	-	-	Del	-	D	97843053	97843063	1	10	268.938	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	1	4	1	4	37	37	37	37	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747349193	3	102206695	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	102206695	102206714	2	16	322.123	-	-	9	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	3	3	3	3	49	52	49	52	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747353481	3	112481116	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	112481116	112481133	2	12	265.325	-	-	8	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	3	4	3	48	51	48	51	4	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747362280	3	133010511	T	TTAG	1527	PASS	TMEM108	CCDS33858.1	r.?	-	-	Ins	intronic	I	133010511	133010514	3	198	1400.49	-	-	0	1	1	TMEM108|CCDS33858.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TMEM108|CCDS33858.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	19	7	19	0	0	./.	17	10	20	16	46	48	46	49	20	16	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747363907	3	136716965	TC	T	358	PASS	IL20RB	CCDS3093.1	r.?	-	-	Del	intronic	D	136716965	136716967	1	8	346.41	-	-	1	1	-	IL20RB|CCDS3093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL20RB|CCDS3093.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	0	7	0	12	33	42	33	42	0	12	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747364600	3	138454799	TTC	T	360	PASS	PIK3CB	CCDS3104.1	r.?	-	-	Del	intronic	D	138454799	138454817	2	16	322.725	-	-	8	1	1	PIK3CB|CCDS3104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PIK3CB|CCDS3104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	3	3	4	3	58	46	58	46	4	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747373590	3	160054379	ATG	A	300	PASS	IFT80	CCDS3188.1	r.?	-	-	Del	intronic	D	160054379	160054397	2	12	268.335	-	-	8	1	-	IFT80|CCDS3188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IFT80|CCDS3188.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	2	3	3	3	41	31	41	31	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747373935	3	160781340	G	GT	300	PASS	PPM1L	CCDS33886.1	r.?	-	-	Ins	intronic	I	160781340	160781350	1	12	263.519	-	-	9	1	1	PPM1L|CCDS33886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PPM1L|CCDS33886.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	3	2	57	43	57	43	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747374999	3	163023250	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	163023250	163023260	1	7	319.113	-	-	9	1	1	-	-	./.	0	0	0	0	18	15	18	16	0	0	./.	6	0	6	0	57	39	57	41	6	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747380098	3	175372979	TA	T	360	PASS	NAALADL2	CCDS46960.1	r.?	-	-	Del	intronic	D	175372979	175372984	1	16	322.725	-	-	4	1	1	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NAALADL2|CCDS46960.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	3	3	6	42	28	42	28	3	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747380672	3	176716735	TA	T	300	PASS	-	-	-	-	-	Del	-	D	176716735	176716745	1	6	268.938	-	-	9	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	5	0	5	0	53	34	53	34	5	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747382086	3	179635135	T	TA	300	PASS	PEX5L	CCDS3236.1	r.?	-	-	Ins	intronic	I	179635135	179635140	1	10	259.907	-	-	4	1	1	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PEX5L|CCDS3236.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	1	4	4	4	44	61	44	61	4	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747382208	3	180070746	GA	G	420	PASS	-	-	-	-	-	Del	-	D	180070746	180070752	1	20	376.513	-	-	5	1	1	-	-	./.	0	0	0	0	5	14	5	14	0	0	./.	4	3	6	3	48	36	48	36	6	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747382266	3	180323055	GT	G	960	PASS	TTC14	CCDS46963.1	r.?	-	-	Del	intronic	D	180323055	180323063	1	77	859.998	-	-	7	1	1	TTC14|CCDS46963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC14|CCDS46963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	6	9	6	0	0	./.	10	6	13	12	56	41	56	41	13	12	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747387224	3	190563695	C	CAT	300	PASS	-	-	-	-	-	Ins	-	I	190563695	190563707	2	10	261.111	-	-	5	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	4	1	5	1	68	27	68	27	5	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747387794	3	191902011	A	AACAAT	1676	PASS	FGF12	CCDS3301.1	r.?	-	-	Ins	intronic	I	191902011	191902013	5	323	1719.8	-	-	0	1	1	FGF12|CCDS3301.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FGF12|CCDS3301.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	15	4	15	0	0	./.	16	18	17	20	39	51	40	51	17	20	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747388340	3	193396736	G	GT	300	PASS	OPA1	CCDS33917.1	r.?	-	-	Ins	intronic	I	193396736	193396746	1	12	265.927	-	-	9	1	1	OPA1|CCDS33917.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	OPA1|CCDS33917.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	15	8	16	0	0	./.	3	2	3	2	41	41	41	42	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747390525	3	196891799	AG	A	300	PASS	DLG1	CCDS3327.1	r.?	-	-	Del	intronic	D	196891799	196891801	1	10	267.733	-	-	1	1	-	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLG1|CCDS3327.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	1	4	2	8	29	60	29	60	2	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747392260	4	3319805	C	CGGAGGCCCGGCCTCCTCACTTAGCAGCCTCAGCGT	319	PASS	RGS12	CCDS3367.1	r.?	-	-	Ins	intronic	I	3319805	3319832	35	42	357.674	-	-	0	1	1	RGS12|CCDS3367.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS12|CCDS3367.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	6	0	0	48	30	52	36	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747397969	4	19633740	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	19633740	19633760	2	6	262.685	-	-	9	1	-	-	-	./.	0	0	0	0	12	12	12	12	0	0	./.	0	5	0	5	25	28	25	28	0	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747408869	4	49109300	C	CCATTCCATTCCATTG	430	PASS	ENSG00000232657	ENST00000417204	r.?	-	-	Ins	downstream	I	49109300	49109312	15	19	806.953	-	-	0	1	1	ENSG00000232657|ENST00000417204|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ENSG00000232657|ENST00000417204|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	162	30	167	30	0	0	./.	18	0	3	0	461	86	514	89	27	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747411115	4	56209282	CAAAAAAAAAAAAAAAAAAAAAA	C	290	PASS	SRD5A3	CCDS3498.1	r.?	-	-	Del	upstream	D	56209282	56209322	22	35	480.216	-	-	1	1	-	SRD5A3|CCDS3498.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	SRD5A3|CCDS3498.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	8	4	8	4	0	0	./.	4	6	7	7	13	13	14	14	8	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747427504	4	104727842	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	104727842	104727852	1	35	532.596	-	-	9	1	1	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	4	6	5	6	26	42	26	42	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747435023	4	127332696	AATAGAATC	A	348	PASS	-	-	-	-	-	Del	-	D	127332696	127332710	8	48	646.339	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	7	7	7	37	35	37	35	7	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747435902	4	129988405	A	AC	300	PASS	SCLT1	CCDS3740.1	r.?	-	-	Ins	intronic	I	129988405	129988407	1	12	266.298	-	-	1	1	1	SCLT1|CCDS3740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCLT1|CCDS3740.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	3	2	30	26	30	27	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747441660	4	147432311	G	GA	569	PASS	SLC10A7	CCDS34073.1	r.?	-	-	Ins	intronic	I	147432311	147432321	1	36	530.789	-	-	9	1	1	SLC10A7|CCDS34073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC10A7|CCDS34073.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	5	5	5	6	38	45	38	45	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747444138	4	154567426	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	154567426	154567431	1	16	319.557	-	-	4	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	3	3	3	4	31	38	31	43	3	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747449152	4	168487526	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	168487526	168487535	1	16	319.557	-	-	8	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	3	3	4	5	32	31	32	32	4	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747454478	4	182322957	TC	T	300	PASS	-	-	-	-	-	Del	-	D	182322957	182322959	1	6	247.032	-	-	1	1	-	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	5	0	7	0	34	22	34	22	7	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747456620	4	187100064	GT	G	900	PASS	-	-	-	-	-	Del	-	D	187100064	187100067	1	72	807.924	-	-	2	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	8	7	13	8	30	26	30	26	13	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747458225	4	190479500	CA	C	1109	PASS	-	-	-	-	-	Del	-	D	190479500	190479508	1	98	1023.37	-	-	7	1	1	-	-	./.	0	0	0	0	32	41	32	41	0	0	./.	6	13	8	17	92	119	92	119	8	17	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747459666	5	439195	C	CT	300	PASS	AHRR	CCDS43297.1	r.?	-	-	Ins	downstream	I	439195	439205	1	12	265.624	-	-	9	1	-	AHRR|CCDS43297.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	EXOC3|ENST00000512944|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	17	14	19	14	0	0	./.	3	2	5	2	60	47	63	48	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747460982	5	3663794	C	CT	329	PASS	-	-	-	-	-	Ins	-	I	3663794	3663803	1	15	319.472	-	-	8	1	1	-	-	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	6	5	55	38	56	38	6	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747464644	5	13026973	AT	A	300	PASS	-	-	-	-	-	Del	-	D	13026973	13026983	1	12	269.237	-	-	9	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	2	3	2	3	32	57	32	57	2	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747466942	5	18191546	CT	C	480	PASS	-	-	-	-	-	Del	-	D	18191546	18191550	1	24	430.177	-	-	3	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	5	3	5	8	23	30	23	30	5	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747468445	5	21466456	TATTAA	T	684	PASS	-	-	-	-	-	Del	-	D	21466456	21466465	5	50	699.414	-	-	1	1	1	-	-	./.	0	0	0	0	17	7	17	7	0	0	./.	9	4	9	4	49	35	49	35	9	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747469460	5	24036374	T	TA	509	PASS	-	-	-	-	-	Ins	-	I	24036374	24036384	1	30	467.167	-	-	9	1	1	-	-	./.	0	0	0	0	11	10	12	10	0	0	./.	4	5	5	4	39	39	40	40	5	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747476492	5	40636890	CA	C	1200	PASS	-	-	-	-	-	Del	-	D	40636890	40636900	1	117	1076.35	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	7	15	0	0	./.	8	12	11	16	39	45	39	45	11	16	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747478976	5	50642279	G	GT	298	PASS	-	-	-	-	-	Ins	-	I	50642279	50642285	1	16	319.472	-	-	5	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	3	3	5	4	39	39	39	41	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747480532	5	54722932	AG	A	300	PASS	SKIV2L2	CCDS3967.1	r.?	-	-	Del	downstream	D	54722932	54722934	1	6	246.961	-	-	1	1	1	SKIV2L2|CCDS3967.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PPAP2A|CCDS34159.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	5	0	9	0	49	34	49	34	9	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747486461	5	69117913	CT	C	363	PASS	-	-	-	-	-	Del	-	D	69117913	69117917	1	14	700.016	-	-	3	1	1	-	-	./.	0	0	0	0	18	5	18	5	0	0	./.	13	0	18	0	78	44	78	44	18	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747493295	5	85603984	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	85603984	85604004	2	15	322.482	-	-	9	1	1	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	2	4	5	4	67	55	67	55	6	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747493313	5	85620992	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	85620992	85621002	1	10	266.227	-	-	9	1	1	-	-	./.	0	0	0	0	10	7	10	8	0	0	./.	4	1	4	1	56	34	56	36	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747494499	5	89497703	GTC	G	300	PASS	-	-	-	-	-	Del	-	D	89497703	89497719	2	10	263.216	-	-	7	1	-	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	1	4	0	52	35	52	35	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747495562	5	92861738	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	92861738	92861746	1	6	265.022	-	-	7	1	1	-	-	./.	0	0	0	0	8	17	8	17	0	0	./.	0	5	2	6	33	48	33	48	2	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747497352	5	97981858	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	97981858	97981868	1	10	265.625	-	-	9	1	1	-	-	./.	0	0	0	0	17	13	18	13	0	0	./.	4	1	4	1	43	40	43	42	4	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747497514	5	98532598	AG	A	720	PASS	-	-	-	-	-	Del	-	D	98532598	98532603	1	40	645.566	-	-	4	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	3	9	10	13	42	42	42	42	10	13	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747501508	5	109192481	TGC	T	300	PASS	MAN2A1	CCDS34209.1	r.?	-	-	Del	intronic	D	109192481	109192485	2	12	265.022	-	-	1	1	1	MAN2A1|CCDS34209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAN2A1|CCDS34209.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	3	5	46	42	46	42	3	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747505019	5	118769746	C	CT	960	PASS	-	-	-	-	-	Ins	-	I	118769746	118769755	1	80	848.313	-	-	8	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	9	7	9	11	55	51	56	51	9	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747509795	5	131979421	G	GT	480	PASS	RAD50	CCDS34233.1	r.5691_5692insu	c.?	p.?	Ins	3'UTR variant	I	131979421	131979422	1	24	425.36	-	-	0	1	1	RAD50|CCDS34233.1|r.5691_5692insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	RAD50|CCDS34233.1|r.5691_5692insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	6	6	6	6	0	0	./.	3	5	4	9	25	22	26	22	4	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747512528	5	138467735	TAC	T	300	PASS	SIL1	CCDS4209.1	r.?	-	-	Del	intronic	D	138467735	138467751	2	12	269.237	-	-	7	1	-	SIL1|CCDS4209.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SIL1|CCDS4209.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	5	7	5	0	0	./.	3	2	4	3	53	42	53	42	4	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747513517	5	140767908	ATAT	A	473	PASS	PCDHGA12	CCDS47291.1	r.?	-	-	Del	upstream	D	140767908	140767914	3	36	537.27	-	-	1	1	1	PCDHGA12|CCDS47291.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PCDHGA12|CCDS47289.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	5	9	7	36	35	36	35	9	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747517897	5	152063708	AAC	A	300	PASS	-	-	-	-	-	Del	-	D	152063708	152063712	2	6	261.41	-	-	1	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	0	7	0	44	61	44	61	7	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747520781	5	159108893	A	AT	1229	PASS	-	-	-	-	-	Ins	-	I	159108893	159108902	1	120	1103.7	-	-	8	1	1	-	-	./.	0	0	0	0	15	12	15	12	0	0	./.	7	14	12	20	40	40	40	42	12	20	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747524760	5	168897592	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	168897592	168897609	2	12	268.033	-	-	8	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	3	2	7	2	63	35	63	35	7	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747527391	5	174659247	A	AAGAAGG	319	PASS	-	-	-	-	-	Ins	-	I	174659247	174659250	6	22	552.585	-	-	0	1	-	-	-	./.	0	0	0	0	9	15	9	15	0	0	./.	10	1	0	0	52	40	54	40	10	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747528351	5	176634906	AGT	A	300	PASS	NSD1	CCDS4412.1	r.?	-	-	Del	intronic	D	176634906	176634924	2	12	268.635	-	-	8	1	-	NSD1|CCDS4412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NSD1|CCDS4412.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	3	10	3	0	0	./.	3	2	4	3	41	29	41	29	4	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747540739	6	22703094	AAG	A	269	PASS	-	-	-	-	-	Del	-	D	22703094	22703112	2	10	266.719	-	-	8	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	1	4	1	4	29	28	29	28	1	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747548330	6	36921295	AGT	A	300	PASS	PI16	CCDS34440.1	r.?	-	-	Del	upstream	D	36921295	36921312	2	12	269.73	-	-	8	1	-	PI16|CCDS34440.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	PI16|CCDS34440.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	18	5	18	5	0	0	./.	3	2	5	2	40	32	40	32	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747554501	6	52852049	CTGTTCTGAATGTTCAGTGTCATTGAATACTTTTGCCCTTCCACATAAACAGCAGCTCTTAAAGGAAAATCAGTATTAGAGGCAGTTGTTTCATTTTCATACTCACCATCCTGCAACTTGTACAACTGTTCTTTTGTTTCCAGAAATTCTTCATCAAACTAAATTTTTAAAAAAGAAACGTATATATACATAGTGGAATATTATTCAGCCATTAAGAAAACAAAATCCTGTCATTTTCAGCAACACCAACAGAAACAGAGGTCATTACGTTAAGTGAAATAAGCCAGGCACAGAAAGACAAAGACTGCATGTTCTGATTCATATGTGGGAGCTAAAAAAGTGGATCTCATGGAAATAGAAAGTTGATTGGTGCTTACTAGAGGCTGGGAAGTGTAGAGAGGAATGGGATGTGAAAAGAGGTTGGTTAATGGTACATAAATACAGCTAGACAGAAGAAATAAAATCTAGTGTTCGATAGTACAGTAGGCTATAGTTAACAATAACGT	CAATAACGTA	290	PASS	GSTA4	CCDS4948.1	r.236-348_287+105del505insuacguuauu	c.88-348_139+105del505insTACGTTATT	p.?	Complex	ess splice	DI	52852050	52852554	505	32	0	-	-	0	1	1	GSTA4|CCDS4948.1|r.236-348_287+105del505insuacguuauu|c.88-348_139+105del505insTACGTTATT|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:indel:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:1000032:SO:0001577:SO:0001576	GSTA4|CCDS4948.1|r.236-348_287+105del505insuacguuauu|c.88-348_139+105del505insTACGTTATT|p.?|protein_coding:CDS:extended_intronic_splice_region:exon:extended_cis_splice_site:intron:indel:complex_change_in_transcript:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000147:SO:CGPX06:SO:0000188:SO:1000032:SO:0001577:SO:0001576	./.	0	0	0	0	13	10	13	10	0	0	./.	7	3	0	0	23	24	30	27	7	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747555055	6	54221415	GCT	G	300	PASS	TINAG	CCDS4955.1	r.?	-	-	Del	intronic	D	54221415	54221430	2	12	269.73	-	-	7	1	1	TINAG|CCDS4955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TINAG|CCDS4955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	3	2	2	2	43	40	43	40	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747559892	6	68513488	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	68513488	68513497	1	15	320.063	-	-	8	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	4	2	5	4	33	17	33	17	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747584682	6	151251156	A	AT	840	PASS	MTHFD1L	CCDS5228.1	r.?	-	-	Ins	intronic	I	151251156	151251163	1	63	744.406	-	-	6	1	1	MTHFD1L|CCDS5228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTHFD1L|CCDS5228.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	6	5	6	0	0	./.	8	6	10	6	25	19	26	19	10	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747591495	7	842564	A	AAG	420	PASS	-	-	-	-	-	Ins	-	I	842564	842580	2	20	368.275	-	-	7	1	1	-	-	./.	0	0	0	0	12	12	12	13	0	0	./.	4	3	5	6	48	48	48	48	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747592949	7	4211100	G	GT	360	PASS	SDK1	CCDS34590.1	r.?	-	-	Ins	intronic	I	4211100	4211108	1	15	319.19	-	-	7	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	6	13	6	0	0	./.	2	4	4	6	36	45	37	46	4	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747593031	7	4419984	TCCAA	T	360	PASS	-	-	-	-	-	Del	-	D	4419984	4419992	4	15	323.405	-	-	1	1	1	-	-	./.	0	0	0	0	17	12	17	12	0	0	./.	4	2	6	6	46	48	46	48	6	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747594331	7	6428251	A	AG	720	PASS	RAC1	CCDS5348.1	r.?	-	-	Ins	intronic	I	6428251	6428254	1	48	636.575	-	-	2	1	1	RAC1|CCDS5348.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAC1|CCDS5348.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	5	7	6	8	23	27	23	27	6	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747596733	7	12825775	T	TTTG	267	PASS	-	-	-	-	-	Ins	-	I	12825775	12825778	3	12	312.568	-	-	0	1	-	-	-	./.	0	0	0	0	12	7	12	7	0	0	./.	1	5	1	0	41	34	41	34	1	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747599187	7	19417320	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	19417320	19417324	2	6	268.3	-	-	1	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	0	6	0	31	17	31	17	6	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747600096	7	21705298	C	CT	480	PASS	DNAH11	ENST00000424253	r.?	-	-	Ins	intronic	I	21705298	21705305	1	25	425.788	-	-	6	1	1	DNAH11|ENST00000424253|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNAH11|ENST00000424253|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	4	4	4	31	47	31	47	4	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747600300	7	22167329	AACTATAC	AG	377	PASS	RAPGEF5	ENST00000344041	r.?	-	-	Complex	intronic	DI	22167330	22167336	7	56	0	-	-	0	1	1	RAPGEF5|ENST00000344041|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	RAPGEF5|ENST00000344041|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	14	15	14	15	0	0	./.	7	6	0	0	28	21	28	21	7	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747604170	7	32449713	C	CA	329	PASS	-	-	-	-	-	Ins	-	I	32449713	32449720	1	15	319.792	-	-	6	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	4	2	5	2	19	24	19	24	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747606543	7	38345301	C	CA	281	PASS	AC006033.10	ENST00000499120	r.?	-	-	Ins	upstream	I	38345301	38345311	1	18	370.081	-	-	9	1	1	AC006033.10|ENST00000499120|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	AC006033.10|ENST00000499120|r.?|-|-|non_protein_coding:insertion:2KB_upstream_variant|SO:0000011:SO:0000667:SO:0001636	./.	0	0	0	0	10	7	10	7	0	0	./.	2	5	0	1	19	30	20	30	2	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747607383	7	40144837	CCAAATACTTCAGGAAAAAAATATTT	C	261	PASS	-	-	-	-	-	Del	-	D	40144837	40144863	25	28	485.107	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	6	3	5	19	47	19	48	3	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747609522	7	45484195	G	GT	480	PASS	-	-	-	-	-	Ins	-	I	45484195	45484197	1	21	426.39	-	-	1	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	6	2	7	4	29	45	29	45	7	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747612410	7	53523064	CTT	C	660	PASS	-	-	-	-	-	Del	-	D	53523064	53523067	2	30	592.909	-	-	2	1	1	-	-	./.	0	0	0	0	7	10	7	10	0	0	./.	2	9	2	10	4	35	4	35	2	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747619937	7	69737597	G	GT	269	PASS	AUTS2	CCDS5539.1	r.?	-	-	Ins	intronic	I	69737597	69737607	1	12	265.29	-	-	9	1	1	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AUTS2|CCDS5539.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	7	15	7	0	0	./.	3	2	3	2	49	48	52	48	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747621135	7	72212444	T	TA	660	PASS	-	-	-	-	-	Ins	-	I	72212444	72212453	1	42	586.286	-	-	8	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	6	5	10	7	48	31	48	31	10	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747622707	7	75671601	C	CT	600	PASS	STYXL1	CCDS5580.1	r.?	-	-	Ins	intronic	I	75671601	75671603	1	27	532.385	-	-	1	1	1	STYXL1|CCDS5580.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	STYXL1|CCDS5580.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	8	4	9	27	41	28	42	4	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747623665	7	77836461	G	GT	360	PASS	MAGI2	CCDS5594.1	r.?	-	-	Ins	intronic	I	77836461	77836471	1	15	311.966	-	-	9	1	1	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MAGI2|CCDS5594.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	4	2	4	45	33	45	34	2	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747627605	7	88871129	TC	T	300	PASS	ZNF804B	CCDS5613.1	r.?	-	-	Del	intronic	D	88871129	88871131	1	12	261.075	-	-	1	1	1	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF804B|CCDS5613.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	15	8	15	0	0	./.	3	2	8	2	44	38	44	38	8	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747629763	7	95287504	GGT	G	269	PASS	-	-	-	-	-	Del	-	D	95287504	95287507	2	6	252.044	-	-	1	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	5	0	6	0	30	44	30	44	6	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747635482	7	107630773	C	CT	720	PASS	LAMB1	CCDS5750.1	r.?	-	-	Ins	intronic	I	107630773	107630775	1	48	638.983	-	-	1	1	1	LAMB1|CCDS5750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LAMB1|CCDS5750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	16	6	16	0	0	./.	5	7	6	9	20	38	21	40	6	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747637381	7	113709584	AGT	A	300	PASS	PPP1R3A	ENST00000449795	r.?	-	-	Del	intronic	D	113709584	113709604	2	10	269.504	-	-	9	1	-	PPP1R3A|ENST00000449795|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PPP1R3A|ENST00000449795|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	1	4	1	5	37	44	37	44	1	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747640854	7	124520215	T	TA	269	PASS	POT1	CCDS5793.1	r.?	-	-	Ins	intronic	I	124520215	124520225	1	12	256.861	-	-	9	1	1	POT1|CCDS5793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	POT1|CCDS5793.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	2	3	3	3	35	41	35	42	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747641440	7	126036354	A	AT	1109	PASS	-	-	-	-	-	Ins	-	I	126036354	126036364	1	108	1006.05	-	-	9	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	8	11	10	16	32	47	32	47	10	16	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747642837	7	129170492	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	129170492	129170493	1	10	234.585	-	-	0	1	1	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	1	4	2	5	23	35	24	36	2	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747645429	7	134729461	AT	A	658	PASS	AGBL3	CCDS47718.1	r.?	-	-	Del	intronic	D	134729461	134729464	1	45	646.208	-	-	2	1	1	AGBL3|CCDS47718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGBL3|CCDS47718.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	8	4	11	7	44	26	44	26	11	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747649906	7	146495386	CT	C	540	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	146495386	146495394	1	28	473.668	-	-	7	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	3	6	4	11	28	52	28	52	5	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747655817	8	772060	AT	A	360	PASS	-	-	-	-	-	Del	-	D	772060	772065	1	16	322.679	-	-	4	1	1	-	-	./.	0	0	0	0	13	18	13	18	0	0	./.	3	3	5	6	41	43	41	43	5	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747657385	8	4322551	G	GA	480	PASS	-	-	-	-	-	Ins	-	I	4322551	4322558	1	25	422.211	-	-	6	1	1	-	-	./.	0	0	0	0	9	10	9	10	0	0	./.	4	4	5	4	42	33	42	34	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747661655	8	14313747	GTC	G	600	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14313747	14313753	2	32	538.6	-	-	2	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	8	5	8	0	0	./.	3	7	3	9	24	41	24	41	3	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747661658	8	14327812	CT	C	360	PASS	SGCZ	CCDS5992.2	r.?	-	-	Del	intronic	D	14327812	14327814	1	15	323.883	-	-	1	1	1	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SGCZ|CCDS5992.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	17	12	17	0	0	./.	4	2	5	4	27	53	27	53	5	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747662271	8	15757698	AG	A	300	PASS	-	-	-	-	-	Del	-	D	15757698	15757700	1	12	269.902	-	-	1	1	1	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	2	3	3	3	37	36	37	36	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747664280	8	20935021	TAC	T	360	PASS	-	-	-	-	-	Del	-	D	20935021	20935040	2	15	322.679	-	-	9	1	-	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	2	4	3	4	29	40	29	40	3	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747665243	8	23276703	T	TA	660	PASS	ENTPD4	ENST00000356206	r.?	-	-	Ins	intronic	I	23276703	23276706	1	42	587.162	-	-	2	1	1	ENTPD4|ENST00000356206|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENTPD4|ENST00000356206|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	7	11	7	0	0	./.	5	6	9	7	40	32	40	32	9	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747666824	8	27240756	A	AC	989	PASS	PTK2B	CCDS6057.1	r.?	-	-	Ins	intronic	I	27240756	27240764	1	78	906.831	-	-	7	1	1	PTK2B|CCDS6057.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTK2B|CCDS6057.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	17	9	0	0	./.	12	5	17	4	60	34	60	35	17	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747668059	8	30014453	GAC	G	300	PASS	DCTN6	CCDS6076.1	r.?	-	-	Del	intronic	D	30014453	30014471	2	12	266.892	-	-	8	1	1	DCTN6|CCDS6076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCTN6|CCDS6076.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	11	7	11	0	0	./.	3	2	3	2	41	40	41	40	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747669912	8	34806900	A	AT	660	PASS	-	-	-	-	-	Ins	-	I	34806900	34806909	1	42	587.162	-	-	8	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	6	8	7	44	27	44	27	8	7	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747672425	8	41334470	G	GC	420	PASS	-	-	-	-	-	Ins	-	I	41334470	41334475	1	20	361.006	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	4	3	5	5	43	41	43	41	5	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747672965	8	42529744	ATGGATAAATGGATGGATAAATGAATGGATGGATGGG	A	329	PASS	-	-	-	-	-	Del	-	D	42529744	42529798	36	16	307.627	-	-	1	1	-	-	-	./.	0	0	0	0	15	8	16	8	0	0	./.	3	3	0	0	29	38	34	41	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747674242	8	49927691	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	49927691	49927699	1	32	531.978	-	-	7	1	1	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	3	7	4	8	26	33	27	33	4	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747675479	8	53684692	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	53684692	53684702	1	56	692.113	-	-	9	1	1	-	-	./.	0	0	0	0	18	13	18	13	0	0	./.	7	6	10	9	49	39	49	39	10	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747676298	8	55830586	GAT	G	960	PASS	-	-	-	-	-	Del	-	D	55830586	55830591	2	80	863.687	-	-	2	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	7	9	10	11	34	38	34	38	10	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747681152	8	70546978	G	GA	269	PASS	SULF1	CCDS6204.1	r.?	-	-	Ins	intronic	I	70546978	70546988	1	6	259.065	-	-	9	1	1	SULF1|CCDS6204.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SULF1|CCDS6204.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	0	5	0	5	21	58	22	59	0	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747682896	8	74958493	GA	G	300	PASS	-	-	-	-	-	Del	-	D	74958493	74958495	1	10	269.902	-	-	1	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	1	4	1	6	24	38	24	38	1	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747682911	8	74993246	TTTC	T	582	PASS	-	-	-	-	-	Del	-	D	74993246	74993252	3	24	647.164	-	-	1	1	-	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	1	11	0	5	15	59	15	59	1	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747683189	8	75737975	TAGAG	T	329	PASS	PI15	CCDS6218.1	r.?	-	-	Del	intronic	D	75737975	75737983	4	12	323.883	-	-	3	1	1	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PI15|CCDS6218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	1	5	3	8	30	37	30	37	3	8	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747688946	8	93024605	CA	C	720	PASS	RUNX1T1	CCDS47891.1	r.?	-	-	Del	intronic	D	93024605	93024613	1	49	647.766	-	-	7	1	1	RUNX1T1|CCDS47891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RUNX1T1|CCDS47891.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	3	8	3	0	0	./.	6	6	7	6	29	28	29	28	7	6	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747691303	8	99081359	A	AT	1320	PASS	C8orf47	CCDS34929.1	r.?	-	-	Ins	intronic	I	99081359	99081368	1	140	1164.69	-	-	8	1	1	C8orf47|CCDS34929.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C8orf47|CCDS34929.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	12	10	0	0	./.	13	9	16	13	35	36	35	36	16	13	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747691391	8	99238834	TTC	T	269	PASS	NIPAL2	CCDS6278.1	r.?	-	-	Del	intronic	D	99238834	99238852	2	12	268.698	-	-	8	1	-	NIPAL2|CCDS6278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NIPAL2|CCDS6278.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	2	3	3	3	49	34	49	34	3	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747692620	8	102840288	AG	A	720	PASS	NCALD	CCDS6292.1	r.?	-	-	Del	intronic	D	102840288	102840290	1	45	645.357	-	-	1	1	1	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCALD|CCDS6292.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	16	11	16	0	0	./.	8	4	9	5	46	33	46	33	9	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747692746	8	103241504	A	AC	300	PASS	RRM2B	CCDS34932.1	r.?	-	-	Ins	intronic	I	103241504	103241505	1	12	264.484	-	-	0	1	-	RRM2B|CCDS34932.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RRM2B|CCDS34932.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	12	0	0	./.	3	2	3	2	33	44	33	44	3	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747696803	8	114713203	GGT	G	300	PASS	-	-	-	-	-	Del	-	D	114713203	114713220	2	12	269.902	-	-	8	1	1	-	-	./.	0	0	0	0	10	15	10	15	0	0	./.	3	2	5	2	35	21	35	21	5	2	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747697513	8	116640231	AAT	A	1109	PASS	TRPS1	CCDS6318.2	r.?	-	-	Del	intronic	D	116640231	116640237	2	108	1021.41	-	-	2	1	1	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	TRPS1|CCDS6318.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	12	14	12	0	0	./.	8	11	13	14	46	45	46	45	13	14	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747705168	8	138597035	C	CT	660	PASS	-	-	-	-	-	Ins	-	I	138597035	138597042	1	42	587.162	-	-	6	1	1	-	-	./.	0	0	0	0	15	18	15	18	0	0	./.	5	6	8	9	26	27	26	27	8	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747710285	9	6614569	TG	T	300	PASS	GLDC	CCDS34987.1	r.?	-	-	Del	intronic	D	6614569	6614571	1	6	251.515	-	-	1	1	1	GLDC|CCDS34987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLDC|CCDS34987.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	5	0	7	0	31	23	31	23	7	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747714949	9	17927996	T	TC	300	PASS	-	-	-	-	-	Ins	-	I	17927996	17927997	1	12	256.332	-	-	0	1	-	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	3	3	4	28	40	28	40	3	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747717998	9	26910038	A	AT	360	PASS	PLAA	CCDS35000.1	r.?	-	-	Ins	intronic	I	26910038	26910047	1	15	320.001	-	-	8	1	1	PLAA|CCDS35000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLAA|CCDS35000.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	4	2	8	4	31	38	31	38	8	4	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747723155	9	39015601	G	GT	261	PASS	-	-	-	-	-	Ins	-	I	39015601	39015611	1	10	480.302	-	-	9	1	1	-	-	./.	0	0	0	0	7	15	9	15	0	0	./.	9	0	9	0	28	41	28	41	9	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747727427	9	69787653	A	ACAAAAAGCCGCGGCGATGAGGGTCAAAAAGCCGCGGCGGCAGGGGG	302	PASS	-	-	-	-	-	Ins	-	I	69787653	69787669	46	22	287.344	-	-	0	1	1	-	-	./.	0	0	0	0	16	2	16	2	0	0	./.	10	1	0	0	44	11	46	11	10	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747730723	9	78022039	C	CA	840	PASS	-	-	-	-	-	Ins	-	I	78022039	78022043	1	63	748.073	-	-	3	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	6	8	9	11	33	31	33	31	9	11	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747731812	9	80580767	A	AG	360	PASS	GNAQ	CCDS6658.1	r.?	-	-	Ins	intronic	I	80580767	80580768	1	12	320.001	-	-	0	1	1	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GNAQ|CCDS6658.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	5	1	6	1	32	31	33	31	6	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747733468	9	85273691	TATTG	T	298	PASS	-	-	-	-	-	Del	-	D	85273691	85273704	4	16	324.215	-	-	3	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	3	6	5	43	21	43	21	6	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747738965	9	99078774	C	CCA	389	PASS	SLC35D2	CCDS6717.1	r.?	-	-	Ins	downstream	I	99078774	99078775	2	8	360.791	-	-	0	1	1	SLC35D2|CCDS6717.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	SLC35D2|CCDS6717.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	6	14	6	14	0	0	./.	0	7	0	2	23	38	23	39	0	9	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747755265	9	139614362	AGTGCAGGGGGCTGTGTGGTCTGGGGCTCCGG	A	329	PASS	FAM69B	CCDS7004.1	r.?	-	-	Del	intronic	D	139614362	139614412	31	12	323.011	-	-	1	1	-	FAM69B|CCDS7004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM69B|CCDS7004.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	1	5	0	0	12	27	12	27	1	5	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747755373	9	139860191	A	AAAAAACAAAC	327	PASS	C9orf141	ENST00000371629	r.?	-	-	Ins	upstream	I	139860191	139860197	10	36	483.013	-	-	0	1	1	C9orf141|ENST00000371629|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	C9orf141|ENST00000371629|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	7	6	7	6	0	0	./.	8	3	0	0	36	17	36	20	8	3	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747764658	X	61722976	TA	T	515	PASS	-	-	-	-	-	Del	-	D	61722976	61722978	1	36	1902.9	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	35	0	0	1	37	28	72	28	35	1	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747772546	X	114349383	C	CA	660	PASS	LRCH2	CCDS48155.1	r.?	-	-	Ins	intronic	I	114349383	114349391	1	36	591.432	-	-	7	1	1	LRCH2|CCDS48155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRCH2|CCDS48155.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	4	7	4	0	0	./.	3	8	6	10	11	19	11	19	6	10	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747780584	Y	13350544	CCAG	C	271	PASS	ENSG00000188681	ENST00000400754	r.?	-	-	Del	intronic	D	13350544	13350550	3	12	602.141	-	-	1	1	1	ENSG00000188681|ENST00000400754|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000188681|ENST00000400754|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	4	25	4	0	0	./.	11	0	13	0	86	22	86	22	13	0	1	1	1	1	1	1	1	1
2731395	PD20348a	PD20348b	2747781637	Y	13726488	AAGAATGGAAT	A	270	PASS	-	-	-	-	-	Del	-	D	13726488	13726499	10	19	987.292	-	-	1	1	1	-	-	./.	0	0	0	0	0	26	0	26	0	0	./.	0	18	0	1	0	146	0	146	0	19	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748936711	1	62728693	G	GA	420	PASS	KANK4	CCDS620.1	r.?	-	-	Ins	intronic	I	62728693	62728701	1	20	369.824	-	-	7	1	1	KANK4|CCDS620.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KANK4|CCDS620.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	11	7	0	0	./.	3	4	5	6	22	21	22	21	5	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748937990	1	66302299	C	CT	420	PASS	PDE4B	CCDS632.1	r.?	-	-	Ins	intronic	I	66302299	66302309	1	20	371.028	-	-	9	1	1	PDE4B|CCDS632.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PDE4B|CCDS632.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	3	4	6	6	30	39	31	39	6	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748939703	1	71921039	GATGAAAGTCTAATATCA	G	377	PASS	NEGR1	CCDS661.1	r.?	-	-	Del	intronic	D	71921039	71921057	17	54	699.115	-	-	1	1	1	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NEGR1|CCDS661.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	12	12	12	0	0	./.	5	8	5	5	24	23	24	26	5	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748947129	1	95285475	TGA	T	960	PASS	SLC44A3	CCDS751.1	r.?	-	-	Del	upstream	D	95285475	95285480	2	80	860.449	-	-	2	1	1	SLC44A3|CCDS751.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SLC44A3|CCDS751.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	14	13	14	13	0	0	./.	7	9	10	11	24	25	24	25	10	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748952001	1	111209690	GGT	G	300	PASS	KCNA3	CCDS828.2	r.?	-	-	Del	downstream	D	111209690	111209707	2	12	267.686	-	-	8	1	1	KCNA3|CCDS828.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNA3|CCDS828.2|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	5	9	5	0	0	./.	2	3	2	3	35	25	35	25	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748963982	1	164697567	A	AAG	300	PASS	PBX1	CCDS1246.1	r.?	-	-	Ins	intronic	I	164697567	164697587	2	10	259.859	-	-	9	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	4	1	6	2	29	14	29	14	6	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748967463	1	176137642	G	GAGGGAGGGAGGAAGGGAGGAAGGCAGGAAGGGAGGGAAGAAGGA	300	PASS	RFWD2	CCDS30944.1	r.?	-	-	Ins	intronic	I	176137642	176137654	44	12	132.825	-	-	0	1	1	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFWD2|CCDS30944.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	8	8	8	0	0	./.	2	3	0	0	20	15	20	15	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748969145	1	181489315	AT	A	600	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181489315	181489320	1	35	537.781	-	-	4	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	4	7	6	21	30	21	30	7	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748980435	1	216051381	G	GT	300	PASS	USH2A	CCDS31025.1	r.?	-	-	Ins	intronic	I	216051381	216051391	1	12	265.88	-	-	9	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	2	3	2	3	19	35	19	35	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748980526	1	216440186	CTA	C	480	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	216440186	216440190	2	24	429.02	-	-	1	1	1	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	2	13	2	13	0	0	./.	3	5	3	7	14	21	14	21	3	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748986613	1	234754079	CTA	C	360	PASS	-	-	-	-	-	Del	-	D	234754079	234754083	2	15	322.668	-	-	1	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	2	4	9	8	28	20	28	20	9	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2748997439	10	12711249	C	CAA	567	PASS	CAMK1D	CCDS7091.1	r.?	-	-	Ins	intronic	I	12711249	12711250	2	36	580.4	-	-	0	1	1	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CAMK1D|CCDS7091.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	6	10	6	0	0	./.	8	3	0	0	35	26	36	28	8	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749002368	10	26381404	AG	A	297	PASS	MYO3A	CCDS7148.1	r.?	-	-	Del	intronic	D	26381404	26381406	1	12	269.839	-	-	1	1	1	MYO3A|CCDS7148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO3A|CCDS7148.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	2	3	3	3	29	18	29	18	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749005567	10	34056598	GATTT	G	898	PASS	-	-	-	-	-	Del	-	D	34056598	34056603	4	72	861.075	-	-	1	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	5	11	6	14	16	33	16	33	6	14	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749006644	10	37492593	G	GTAT	537	PASS	ANKRD30A	CCDS7193.1	r.?	-	-	Ins	intronic	I	37492593	37492598	3	36	573.777	-	-	1	1	1	ANKRD30A|CCDS7193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANKRD30A|CCDS7193.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	8	9	11	28	28	28	30	9	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749015958	10	67471422	GACCTGACAGAT	G	319	PASS	-	-	-	-	-	Del	-	D	67471422	67471436	11	42	593.645	-	-	1	1	1	-	-	./.	0	0	0	0	15	9	15	9	0	0	./.	5	6	7	9	19	26	19	26	7	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749024888	10	93915623	A	AT	300	PASS	CPEB3	CCDS31246.1	r.?	-	-	Ins	intronic	I	93915623	93915631	1	12	266.226	-	-	7	1	1	CPEB3|CCDS31246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CPEB3|CCDS31246.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	14	7	14	0	0	./.	2	3	3	5	15	19	15	19	3	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749026431	10	98633899	ACT	A	720	PASS	LCOR	CCDS7451.1	r.?	-	-	Del	intronic	D	98633899	98633904	2	49	647.613	-	-	2	1	1	LCOR|CCDS7451.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	LCOR|CCDS7451.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	6	6	8	8	27	25	27	25	8	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749027541	10	101730401	G	GCC	660	PASS	DNMBP	CCDS7485.1	r.?	-	-	Ins	intronic	I	101730401	101730403	2	42	579.196	-	-	1	1	1	DNMBP|CCDS7485.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DNMBP|CCDS7485.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	5	7	6	0	0	./.	5	6	10	6	24	31	24	31	10	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749028325	10	103876289	TAC	T	300	PASS	LDB1	CCDS7528.1	r.?	-	-	Del	upstream	D	103876289	103876303	2	12	268.635	-	-	6	1	1	LDB1|CCDS7528.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	LDB1|CCDS44472.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	2	26	28	26	28	3	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749034868	10	127581417	GT	G	563	PASS	FANK1	CCDS31309.1	r.?	-	-	Del	upstream	D	127581417	127581420	1	50	701.581	-	-	2	1	1	FANK1|CCDS31309.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	DHX32|ENST00000415732|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	108	116	108	116	0	0	./.	4	9	6	15	187	282	187	282	6	15	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749045898	11	24547574	AC	A	1078	PASS	LUZP2	CCDS31446.1	r.?	-	-	Del	intronic	D	24547574	24547576	1	90	1027.7	-	-	1	1	1	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LUZP2|CCDS31446.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	9	6	9	0	0	./.	5	14	6	14	18	36	18	36	6	14	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749078757	12	3179050	TCA	T	360	PASS	-	-	-	-	-	Del	-	D	3179050	3179070	2	16	322.474	-	-	9	1	-	-	-	./.	0	0	0	0	6	11	6	11	0	0	./.	3	3	4	3	30	20	30	20	4	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749084998	12	19876157	T	TA	569	PASS	-	-	-	-	-	Ins	-	I	19876157	19876164	1	32	520.598	-	-	6	1	-	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	7	8	13	33	27	34	27	8	13	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749085068	12	20007550	T	TC	269	PASS	-	-	-	-	-	Ins	-	I	20007550	20007551	1	12	267.223	-	-	0	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	2	3	2	3	26	22	26	22	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749090484	12	34489994	AC	A	660	PASS	-	-	-	-	-	Del	-	D	34489994	34489996	1	40	593.309	-	-	1	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	7	4	7	9	26	27	26	27	7	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749105921	12	87083287	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	87083287	87083288	1	16	320.667	-	-	0	1	1	-	-	./.	0	0	0	0	10	9	10	9	0	0	./.	3	3	5	7	23	21	23	21	5	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749106334	12	88392012	ATGATAAG	A	290	PASS	C12orf50	CCDS9031.1	r.?	-	-	Del	intronic	D	88392012	88392021	7	20	540.466	-	-	1	1	1	C12orf50|CCDS9031.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C12orf50|CCDS9031.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	1	9	1	10	14	26	14	26	1	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749118439	12	123115540	C	CTTTA	300	PASS	KNTC1	CCDS45002.1	r.?	-	-	Ins	downstream	I	123115540	123115568	4	12	258.192	-	-	6	1	-	KNTC1|CCDS45002.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	GPR81|CCDS9236.1|r.?|-|-|protein_coding:three_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	3	2	3	8	27	35	27	35	3	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749127092	13	28558193	G	GT	780	PASS	PRHOXNB	CCDS45020.1	r.?	-	-	Ins	intronic	I	28558193	28558202	1	54	694.745	-	-	8	1	1	PRHOXNB|CCDS45020.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRHOXNB|CCDS45020.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	7	13	0	0	./.	5	8	8	12	29	44	30	44	8	12	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749136517	13	56712461	GC	G	600	PASS	-	-	-	-	-	Del	-	D	56712461	56712470	1	32	540.625	-	-	8	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	7	6	10	21	21	21	21	6	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749137962	13	61328872	CCTGTTTATATTTA	C	319	PASS	-	-	-	-	-	Del	-	D	61328872	61328888	13	42	596.012	-	-	1	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	6	5	5	5	20	22	21	22	6	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749139413	13	65963946	G	GTTTTA	540	PASS	-	-	-	-	-	Ins	-	I	65963946	65963971	5	30	460.554	-	-	4	1	-	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	4	5	8	7	36	25	39	25	8	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749153687	13	108321292	T	TA	869	PASS	FAM155A	CCDS32006.1	r.?	-	-	Ins	intronic	I	108321292	108321301	1	72	803.713	-	-	8	1	1	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM155A|CCDS32006.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	6	7	7	0	0	./.	8	7	10	11	29	34	29	34	10	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749165484	14	47890488	AT	A	480	PASS	MDGA2	CCDS45098.1	r.?	-	-	Del	intronic	D	47890488	47890492	1	25	433.614	-	-	3	1	1	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MDGA2|CCDS45098.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	4	4	5	6	13	20	13	20	5	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749168848	14	57199185	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	57199185	57199192	1	64	750.848	-	-	6	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	7	7	11	8	27	30	27	33	11	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749171620	14	67547979	AC	A	480	PASS	GPHN	CCDS9777.1	r.?	-	-	Del	intronic	D	67547979	67547982	1	9	434.217	-	-	2	1	1	GPHN|CCDS9777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GPHN|CCDS9777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	8	0	9	3	17	14	17	14	9	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749188951	15	35547708	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	35547708	35547718	1	6	266.07	-	-	9	1	1	-	-	./.	0	0	0	0	16	14	16	14	0	0	./.	5	0	5	0	28	30	28	31	5	0	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749189411	15	37013971	TTC	T	360	PASS	C15orf41	CCDS45216.1	r.?	-	-	Del	intronic	D	37013971	37013991	2	12	324.462	-	-	9	1	-	C15orf41|CCDS45216.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C15orf41|CCDS45216.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	1	5	1	4	23	40	23	40	1	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749192796	15	45946322	A	AAC	300	PASS	SQRDL	CCDS10127.1	r.?	-	-	Ins	intronic	I	45946322	45946324	2	6	264.866	-	-	0	1	1	SQRDL|CCDS10127.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SQRDL|CCDS10127.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	0	1	0	35	29	35	31	6	0	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749195024	15	52529154	A	AT	509	PASS	MYO5C	CCDS42036.1	r.?	-	-	Ins	intronic	I	52529154	52529162	1	30	481.576	-	-	7	1	1	MYO5C|CCDS42036.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYO5C|CCDS42036.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	4	5	4	7	24	36	26	36	4	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749200499	15	65309442	A	AT	720	PASS	MTFMT	CCDS45280.1	r.?	-	-	Ins	intronic	I	65309442	65309443	1	40	636.281	-	-	0	1	1	MTFMT|CCDS45280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MTFMT|CCDS45280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	9	3	11	4	39	21	40	21	11	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749205470	15	77798427	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	77798427	77798428	1	10	265.468	-	-	0	1	1	-	-	./.	0	0	0	0	12	10	12	11	0	0	./.	4	1	5	1	38	32	38	32	5	1	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749211257	15	93537764	C	CA	480	PASS	CHD2	CCDS10374.2	r.?	-	-	Ins	intronic	I	93537764	93537769	1	16	428.602	-	-	4	1	1	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CHD2|CCDS10374.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	2	16	2	0	0	./.	7	1	9	2	41	16	41	16	9	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749218140	16	8124238	G	GAT	298	PASS	-	-	-	-	-	Ins	-	I	8124238	8124239	2	15	317.979	-	-	0	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	4	2	0	0	32	21	32	21	4	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749231420	16	51241810	TATCC	T	360	PASS	-	-	-	-	-	Del	-	D	51241810	51241840	4	12	325.204	-	-	7	1	-	-	-	./.	0	0	0	0	4	11	4	11	0	0	./.	1	5	5	6	18	24	18	24	5	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749231447	16	51346829	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	51346829	51346839	1	12	266.186	-	-	9	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	2	3	2	3	26	33	28	33	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749234382	16	59694290	TG	T	480	PASS	-	-	-	-	-	Del	-	D	59694290	59694296	1	16	433.605	-	-	5	1	1	-	-	./.	0	0	0	0	5	11	5	11	0	0	./.	7	1	10	3	25	16	25	16	10	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749259095	17	40761531	GATCCGGAGGCGCCGAGCCGC	G	261	PASS	FAM134C	CCDS11432.1	r.?	-	-	Del	upstream	D	40761531	40761560	20	24	486.386	-	-	1	1	1	FAM134C|CCDS11432.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	FAM134C|CCDS11432.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	12	13	12	13	0	0	./.	7	2	8	2	27	18	27	18	8	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749261527	17	46909471	CTGACTAGGCGCGG	C	348	PASS	CALCOCO2	CCDS11538.1	r.?	-	-	Del	intronic	D	46909471	46909487	13	49	641.491	-	-	1	1	1	CALCOCO2|CCDS11538.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CALCOCO2|CCDS11538.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	6	6	6	6	19	19	19	19	6	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749265970	17	57221619	A	AT	300	PASS	SKA2	CCDS45747.1	r.?	-	-	Ins	intronic	I	57221619	57221620	1	12	266.937	-	-	0	1	1	SKA2|CCDS45747.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SKA2|CCDS45747.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	4	9	4	0	0	./.	3	2	3	3	34	38	35	39	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749268169	17	61432935	CT	C	480	PASS	TANC2	CCDS45754.1	r.?	-	-	Del	intronic	D	61432935	61432938	1	24	432.878	-	-	2	1	1	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TANC2|CCDS45754.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	3	5	4	6	46	50	46	50	4	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749269657	17	64392741	T	TTA	269	PASS	PRKCA	CCDS11664.1	r.?	-	-	Ins	intronic	I	64392741	64392743	2	6	263.324	-	-	0	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	5	0	10	10	36	45	37	46	11	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749270409	17	65693389	C	CCT	360	PASS	PITPNC1	ENST00000423236	r.?	-	-	Ins	downstream	I	65693389	65693405	2	15	317.434	-	-	7	1	-	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	PITPNC1|ENST00000423236|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	12	12	12	12	0	0	./.	2	4	2	1	32	46	34	46	4	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749271691	17	68133719	CCT	C	300	PASS	KCNJ16	CCDS11687.1	r.?	-	-	Del	downstream	D	68133719	68133735	2	12	270.549	-	-	7	1	1	KCNJ16|CCDS11687.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	KCNJ16|CCDS11687.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	7	14	7	14	0	0	./.	2	3	3	3	43	44	43	44	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749271867	17	68559105	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	68559105	68559115	1	12	266.937	-	-	9	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	2	3	4	3	59	39	60	40	4	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749278050	17	80449091	T	TGAG	1080	PASS	NARF	CCDS42404.1	r.?	-	-	Ins	downstream	I	80449091	80449115	3	75	934.842	-	-	7	1	-	NARF|CCDS42404.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	NARF|CCDS42404.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	9	7	9	7	0	0	./.	4	14	11	19	54	65	54	65	11	19	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749287780	18	28014500	CA	C	689	PASS	-	-	-	-	-	Del	-	D	28014500	28014504	1	45	641.726	-	-	3	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	8	6	9	23	17	23	17	6	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749290426	18	37464656	AC	A	600	PASS	-	-	-	-	-	Del	-	D	37464656	37464658	1	27	540.993	-	-	1	1	1	-	-	./.	0	0	0	0	7	13	7	13	0	0	./.	2	8	3	8	17	28	17	28	3	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749295127	18	53536981	AAGATTTTCACAT	A	435	PASS	-	-	-	-	-	Del	-	D	53536981	53536998	12	70	813.596	-	-	1	1	1	-	-	./.	0	0	0	0	13	14	13	14	0	0	./.	9	6	9	7	16	27	16	27	9	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749312076	19	19151048	C	CT	540	PASS	ARMC6	CCDS32965.1	r.?	-	-	Ins	intronic	I	19151048	19151050	1	28	482.804	-	-	1	1	1	ARMC6|CCDS32965.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ARMC6|CCDS32965.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	12	8	12	0	0	./.	3	6	7	7	23	22	23	22	7	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749313766	19	22475743	GC	G	900	PASS	-	-	-	-	-	Del	-	D	22475743	22475746	1	60	812.5	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	11	4	12	5	35	27	35	27	12	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749319472	19	40700352	ATGTTG	A	654	PASS	MAP3K10	CCDS12549.1	r.?	-	-	Del	intronic	D	40700352	40700358	5	60	759.458	-	-	1	1	1	MAP3K10|CCDS12549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAP3K10|CCDS12549.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	9	8	9	0	0	./.	5	9	8	13	19	40	19	40	8	13	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749325441	19	54444327	AAG	A	509	PASS	CACNG7	CCDS12868.1	r.?	-	-	Del	intronic	D	54444327	54444335	2	24	482.804	-	-	3	1	1	CACNG7|CCDS12868.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNG7|CCDS12868.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	7	2	8	18	27	18	27	2	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749329244	2	5575156	TATAAAAAGCAACC	T	435	PASS	-	-	-	-	-	Del	-	D	5575156	5575171	13	60	807.051	-	-	1	1	1	-	-	./.	0	0	0	0	6	5	6	5	0	0	./.	11	4	11	5	30	25	30	25	11	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749330972	2	10897447	CTT	C	598	PASS	ATP6V1C2	CCDS1674.1	r.?	-	-	Del	intronic	D	10897447	10897451	2	40	589.43	-	-	3	1	1	ATP6V1C2|CCDS1674.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP6V1C2|CCDS1674.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	10	14	10	0	0	./.	4	7	6	10	26	23	26	23	6	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749331574	2	12519283	CA	C	449	PASS	-	-	-	-	-	Del	-	D	12519283	12519291	1	25	430.427	-	-	7	1	1	-	-	./.	0	0	0	0	11	9	11	9	0	0	./.	4	4	5	7	24	24	24	24	5	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749334585	2	22823556	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	22823556	22823565	1	20	372.41	-	-	8	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	3	4	4	7	27	21	27	21	4	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749342754	2	46174277	T	TA	480	PASS	PRKCE	CCDS1824.1	r.?	-	-	Ins	intronic	I	46174277	46174284	1	24	425.611	-	-	6	1	1	PRKCE|CCDS1824.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCE|CCDS1824.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	12	10	12	0	0	./.	3	5	5	6	28	19	28	19	5	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749348772	2	65380357	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	65380357	65380358	1	10	262.997	-	-	0	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	4	1	4	3	24	25	24	25	4	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749350167	2	69740199	A	AT	420	PASS	AAK1	CCDS1893.2	r.?	-	-	Ins	intronic	I	69740199	69740207	1	18	371.808	-	-	7	1	1	AAK1|CCDS1893.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AAK1|CCDS1893.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	10	3	10	0	0	./.	2	5	7	6	24	28	24	29	7	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749359696	2	103139076	GCA	G	300	PASS	SLC9A4	CCDS33264.1	r.?	-	-	Del	intronic	D	103139076	103139094	2	12	268.415	-	-	8	1	1	SLC9A4|CCDS33264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC9A4|CCDS33264.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	3	2	3	49	17	49	17	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749361174	2	108711211	TA	T	780	PASS	-	-	-	-	-	Del	-	D	108711211	108711214	1	50	698.843	-	-	2	1	1	-	-	./.	0	0	0	0	9	7	9	7	0	0	./.	4	9	4	10	20	22	20	22	4	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749367997	2	131928592	G	GGATTA	360	PASS	PLEKHB2	ENST00000404460	r.?	-	-	Ins	intronic	I	131928592	131928598	5	15	304.759	-	-	1	1	1	PLEKHB2|ENST00000404460|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLEKHB2|ENST00000404460|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	16	5	17	0	0	./.	2	4	2	5	15	22	15	22	2	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749381077	2	173168464	CTT	C	600	PASS	-	-	-	-	-	Del	-	D	173168464	173168468	2	20	538.034	-	-	3	1	1	-	-	./.	0	0	0	0	7	11	7	11	0	0	./.	9	1	11	3	25	23	25	23	11	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749382071	2	176406454	GT	G	600	PASS	-	-	-	-	-	Del	-	D	176406454	176406464	1	35	538.034	-	-	9	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	4	6	9	11	31	32	31	32	9	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749391419	2	206311171	TA	T	900	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	206311171	206311175	1	70	807.052	-	-	3	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	15	11	15	0	0	./.	6	9	6	10	30	24	30	24	6	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749398926	2	228406708	C	CTGTT	285	PASS	AGFG1	CCDS46533.1	r.?	-	-	Ins	intronic	I	228406708	228406712	4	27	510.942	-	-	0	1	1	AGFG1|CCDS46533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	AGFG1|CCDS46533.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	8	2	8	4	32	24	32	24	8	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749403774	20	497352	C	CTT	749	PASS	CSNK2A1P	CCDS13003.1	r.?	-	-	Ins	intronic	I	497352	497355	2	54	689.906	-	-	2	1	1	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CSNK2A1P|CCDS13003.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	7	6	7	0	0	./.	8	5	10	6	30	22	32	22	10	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749407085	20	9406758	G	GA	300	PASS	PLCB4	CCDS13104.1	r.?	-	-	Ins	intronic	I	9406758	9406768	1	12	267.386	-	-	9	1	1	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PLCB4|CCDS13104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	2	3	2	4	30	25	30	25	2	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749409646	20	17418636	CCA	C	325	PASS	PCSK2	CCDS13125.1	r.?	-	-	Del	intronic	D	17418636	17418640	2	21	414.091	-	-	1	1	1	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCSK2|CCDS13125.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	6	6	6	0	0	./.	2	6	0	0	18	24	18	24	2	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749420801	20	48791746	C	CCT	449	PASS	-	-	-	-	-	Ins	-	I	48791746	48791747	2	9	424.326	-	-	0	1	-	-	-	./.	0	0	0	0	13	3	13	3	0	0	./.	0	8	4	1	32	29	32	29	4	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749425069	20	59466402	TTG	T	360	PASS	-	-	-	-	-	Del	-	D	59466402	59466422	2	15	325.921	-	-	9	1	-	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	2	4	3	2	32	29	32	29	3	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749438978	21	37577503	GCGG	GC	596	PASS	DOPEY2	CCDS13643.1	r.?	-	-	Complex	intronic	DI	37577504	37577506	3	49	0	-	-	0	1	1	DOPEY2|CCDS13643.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	DOPEY2|CCDS13643.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	6	6	0	0	24	39	24	39	6	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749439083	21	37809466	T	TG	778	PASS	-	-	-	-	-	Ins	-	I	37809466	37809470	1	55	751.458	-	-	3	1	1	-	-	./.	0	0	0	0	13	13	13	13	0	0	./.	4	10	9	12	20	28	20	28	9	12	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749447697	22	28948123	C	CA	420	PASS	TTC28	CCDS46678.1	r.?	-	-	Ins	intronic	I	28948123	28948132	1	20	377.776	-	-	8	1	1	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	4	3	8	4	20	19	21	19	8	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749448420	22	30795595	C	CG	480	PASS	SEC14L2	CCDS13876.1	r.?	-	-	Ins	intronic	I	30795595	30795599	1	24	430.539	-	-	3	1	1	SEC14L2|CCDS13876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SEC14L2|CCDS13876.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	6	14	6	0	0	./.	5	3	6	4	34	21	34	21	6	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749455203	22	48111402	C	CCT	269	PASS	-	-	-	-	-	Ins	-	I	48111402	48111403	2	10	260.207	-	-	0	1	-	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	1	4	2	0	21	25	22	25	3	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749456839	3	1636985	CA	C	540	PASS	-	-	-	-	-	Del	-	D	1636985	1636987	1	30	485.116	-	-	1	1	1	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	5	4	6	8	23	24	23	24	6	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749463706	3	21949610	A	ATATCTATATATCTTTCTCTCTATATC	300	PASS	-	-	-	-	-	Ins	-	I	21949610	21949618	26	12	191.241	-	-	0	1	-	-	-	./.	0	0	0	0	10	5	10	5	0	0	./.	3	2	0	0	27	20	27	20	3	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749466319	3	31050284	AGAC	A	989	PASS	-	-	-	-	-	Del	-	D	31050284	31050288	3	90	916.33	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	9	8	12	9	28	23	28	23	12	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749467508	3	34128212	G	GA	269	PASS	-	-	-	-	-	Ins	-	I	34128212	34128222	1	10	265.896	-	-	9	1	1	-	-	./.	0	0	0	0	7	17	7	17	0	0	./.	4	1	4	1	47	29	47	29	4	1	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749468867	3	39513703	C	CA	660	PASS	MOBP	CCDS2687.1	r.?	-	-	Ins	intronic	I	39513703	39513707	1	40	583.888	-	-	3	1	1	MOBP|CCDS2687.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MOBP|CCDS2687.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	10	9	10	0	0	./.	7	4	7	6	25	24	26	24	7	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749471708	3	48353625	A	AG	300	PASS	SPINK8	CCDS46822.1	r.?	-	-	Ins	intronic	I	48353625	48353626	1	12	259.876	-	-	0	1	1	SPINK8|CCDS46822.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPINK8|CCDS46822.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	9	4	9	0	0	./.	2	3	2	4	23	30	23	31	2	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749477444	3	65530978	AAG	A	269	PASS	MAGI1	CCDS33781.1	r.?	-	-	Del	intronic	D	65530978	65530996	2	12	268.305	-	-	8	1	1	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAGI1|CCDS33781.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	2	3	2	3	20	28	20	28	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749478188	3	67888610	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	67888610	67888616	1	42	585.694	-	-	5	1	1	-	-	./.	0	0	0	0	8	8	8	8	0	0	./.	5	6	6	10	18	24	18	24	6	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749495562	3	124635973	GTC	G	360	PASS	MUC13	CCDS33839.1	r.?	-	-	Del	intronic	D	124635973	124635993	2	16	321.604	-	-	9	1	1	MUC13|CCDS33839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MUC13|CCDS33839.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	14	10	14	0	0	./.	3	3	3	3	30	23	30	23	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749502280	3	146089169	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	146089169	146089179	1	42	586.296	-	-	9	1	1	-	-	./.	0	0	0	0	8	12	8	12	0	0	./.	5	6	9	10	28	35	28	35	9	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749503315	3	149896893	C	CAT	420	PASS	-	-	-	-	-	Ins	-	I	149896893	149896911	2	20	368.883	-	-	8	1	1	-	-	./.	0	0	0	0	4	7	4	7	0	0	./.	3	4	4	5	10	19	10	19	4	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749503827	3	151487671	C	CA	757	PASS	-	-	-	-	-	Ins	-	I	151487671	151487677	1	56	692.294	-	-	5	1	1	-	-	./.	0	0	0	0	13	19	13	19	0	0	./.	6	7	8	9	23	26	23	26	8	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749514279	3	184234210	T	TA	809	PASS	EIF2B5	ENST00000444495	r.?	-	-	Ins	intronic	I	184234210	184234214	1	64	744.991	-	-	3	1	1	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EIF2B5|ENST00000444495|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	8	15	8	0	0	./.	7	7	9	8	27	25	28	26	9	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749527809	4	26339717	G	GT	300	PASS	RBPJ	CCDS33969.1	r.?	-	-	Ins	intronic	I	26339717	26339727	1	10	260.409	-	-	9	1	1	RBPJ|CCDS33969.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	RBPJ|CCDS33969.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	14	13	14	0	0	./.	1	4	0	3	27	31	27	31	1	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749530186	4	34010388	CTT	C	687	PASS	-	-	-	-	-	Del	-	D	34010388	34010394	2	54	700.543	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	8	5	9	8	24	27	24	27	9	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749535645	4	49305113	GC	G	259	PASS	-	-	-	-	-	Del	-	D	49305113	49305115	1	8	377.216	-	-	1	1	1	-	-	./.	0	0	0	0	0	12	0	12	0	0	./.	0	7	0	8	1	50	1	50	0	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749537341	4	56885380	GTTCA	G	598	PASS	CEP135	CCDS33986.1	r.?	-	-	Del	intronic	D	56885380	56885386	4	30	592.166	-	-	1	1	1	CEP135|CCDS33986.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP135|CCDS33986.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	12	16	12	0	0	./.	2	9	4	11	30	23	30	23	4	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749540621	4	66361950	C	CT	532	PASS	EPHA5	CCDS3513.1	r.?	-	-	Ins	intronic	I	66361950	66361960	1	54	689.706	-	-	9	1	1	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EPHA5|CCDS3513.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	8	5	11	7	29	22	29	23	11	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749544481	4	77721200	G	GAGGAAGGA	348	PASS	-	-	-	-	-	Ins	-	I	77721200	77721213	8	49	586.449	-	-	3	1	-	-	-	./.	0	0	0	0	8	6	8	6	0	0	./.	6	6	6	6	33	43	33	43	6	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749547217	4	86680373	A	ATAAT	598	PASS	ARHGAP24	CCDS34025.1	r.?	-	-	Ins	intronic	I	86680373	86680378	4	36	566.277	-	-	1	1	1	ARHGAP24|CCDS34025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP24|CCDS34025.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	9	17	9	0	0	./.	8	3	9	5	25	23	25	24	9	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749548148	4	89256248	CA	C	480	PASS	-	-	-	-	-	Del	-	D	89256248	89256250	1	24	431.104	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	3	7	4	18	23	18	23	7	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749564210	4	142329296	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	142329296	142329305	1	20	373.001	-	-	8	1	1	-	-	./.	0	0	0	0	5	6	5	6	0	0	./.	4	3	4	7	24	25	25	25	4	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749568370	4	155735995	C	CT	300	PASS	RBM46	CCDS3790.1	r.?	-	-	Ins	intronic	I	155735995	155736004	1	12	265.827	-	-	8	1	1	RBM46|CCDS3790.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBM46|CCDS3790.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	7	8	7	0	0	./.	2	3	4	4	17	16	17	16	4	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749576209	4	178693983	GC	G	780	PASS	ENSG00000231171	ENST00000507870	r.?	-	-	Del	intronic	D	178693983	178693986	1	56	700.543	-	-	2	1	1	ENSG00000231171|ENST00000507870|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ENSG00000231171|ENST00000507870|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	6	7	7	11	29	28	29	28	7	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749591010	5	25766871	CA	C	720	PASS	-	-	-	-	-	Del	-	D	25766871	25766875	1	45	647.415	-	-	3	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	4	8	4	11	15	32	15	32	4	11	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749594525	5	35008058	TTC	T	360	PASS	AGXT2	CCDS3908.1	r.?	-	-	Del	intronic	D	35008058	35008077	2	16	323.708	-	-	9	1	-	AGXT2|CCDS3908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGXT2|CCDS3908.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	3	3	3	3	25	32	25	32	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749596394	5	40734325	TC	T	480	PASS	TTC33	CCDS3931.1	r.?	-	-	Del	intronic	D	40734325	40734328	1	16	429.804	-	-	2	1	1	TTC33|CCDS3931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC33|CCDS3931.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	7	1	7	6	21	22	21	22	7	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749597635	5	46021790	CAGTTTGGA	C	348	PASS	-	-	-	-	-	Del	-	D	46021790	46021799	8	45	647.415	-	-	1	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	4	8	7	7	30	26	30	27	7	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749599329	5	54425596	CA	C	749	PASS	CDC20B	CCDS3966.1	r.?	-	-	Del	intronic	D	54425596	54425600	1	50	701.367	-	-	3	1	1	CDC20B|CCDS3966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CDC20B|CCDS3966.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	4	9	9	9	30	35	30	35	9	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749601036	5	59360004	TAA	T	600	PASS	PDE4D	CCDS47032.1	r.?	-	-	Del	intronic	D	59360004	59360009	2	36	539.513	-	-	4	1	1	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE4D|CCDS47032.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	5	5	6	17	23	17	23	5	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749604770	5	73129759	TG	T	420	PASS	ENSG00000214944	CCDS47231.1	r.?	-	-	Del	intronic	D	73129759	73129763	1	18	377.659	-	-	3	1	1	ENSG00000214944|CCDS47231.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000214944|CCDS47231.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	5	2	8	8	24	21	24	21	8	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749609237	5	86501135	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	86501135	86501153	2	12	269.756	-	-	8	1	1	-	-	./.	0	0	0	0	7	7	7	7	0	0	./.	3	2	3	3	32	28	32	28	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749628482	5	154225518	G	GTA	480	PASS	C5orf4	CCDS43390.1	r.?	-	-	Ins	intronic	I	154225518	154225536	2	16	421.977	-	-	8	1	1	C5orf4|CCDS43390.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C5orf4|CCDS43390.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	5	6	5	0	0	./.	7	1	10	5	24	17	24	17	10	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749639124	6	1827515	A	ATGTATATACACACGTTTTAGAAAACCTGTATATACACACGTTTTGGAAAACC	262	PASS	GMDS	CCDS4474.1	r.?	-	-	Ins	intronic	I	1827515	1827529	52	12	135.062	-	-	0	1	1	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GMDS|CCDS4474.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	7	12	7	0	0	./.	5	1	0	0	25	29	29	30	5	1	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749640424	6	5461199	CTG	C	420	PASS	FARS2	CCDS4494.1	r.?	-	-	Del	intronic	D	5461199	5461219	2	20	378.127	-	-	9	1	-	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FARS2|CCDS4494.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	13	10	13	0	0	./.	4	3	4	3	29	32	29	32	4	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749645927	6	20180774	GT	G	720	PASS	LPCAT3	CCDS34346.1	r.?	-	-	Del	intronic	D	20180774	20180776	1	49	645.208	-	-	1	1	1	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LPCAT3|CCDS34346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	11	9	11	0	0	./.	6	6	9	6	35	26	35	26	9	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749682368	6	150076554	CT	C	629	PASS	PCMT1	CCDS5219.1	r.?	-	-	Del	intronic	D	150076554	150076558	1	42	591.792	-	-	3	1	1	PCMT1|CCDS5219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCMT1|CCDS5219.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	6	5	11	7	14	12	14	12	11	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749684150	6	156463885	TG	T	360	PASS	-	-	-	-	-	Del	-	D	156463885	156463887	1	12	324.109	-	-	1	1	1	-	-	./.	0	0	0	0	9	13	9	13	0	0	./.	5	1	7	2	14	7	14	7	7	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749690922	7	7201710	C	CT	282	PASS	C1GALT1	ENST00000429911	r.?	-	-	Ins	intronic	I	7201710	7201720	1	10	261.99	-	-	9	1	1	C1GALT1|ENST00000429911|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	C1GALT1|ENST00000429911|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	3	11	3	11	0	0	./.	1	4	2	8	14	20	14	20	2	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749692348	7	11365923	AC	A	300	PASS	-	-	-	-	-	Del	-	D	11365923	11365926	1	12	267.409	-	-	2	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	2	3	5	5	14	19	14	19	5	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749697218	7	26592871	GA	G	600	PASS	-	-	-	-	-	Del	-	D	26592871	26592876	1	35	539.634	-	-	4	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	4	6	6	12	18	29	18	29	6	12	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749700404	7	36466410	G	GT	540	PASS	ANLN	CCDS5447.1	r.?	-	-	Ins	intronic	I	36466410	36466420	1	28	471.823	-	-	9	1	1	ANLN|CCDS5447.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ANLN|CCDS5447.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	3	6	7	12	26	23	27	23	7	12	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749725883	7	111955294	AATTTTATTCTT	A	435	PASS	ZNF277	CCDS5755.2	r.?	-	-	Del	intronic	D	111955294	111955307	11	72	808.247	-	-	1	1	1	ZNF277|CCDS5755.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNF277|CCDS5755.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	7	8	5	9	22	24	24	24	7	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749730416	7	128038821	TC	T	420	PASS	IMPDH1	CCDS34749.1	r.?	-	-	Del	intronic	D	128038821	128038824	1	20	375.938	-	-	2	1	1	IMPDH1|CCDS34749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMPDH1|CCDS34749.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	7	10	7	0	0	./.	4	3	7	3	19	28	19	28	7	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749749854	8	27507515	G	GT	300	PASS	SCARA3	CCDS34871.1	r.?	-	-	Ins	intronic	I	27507515	27507525	1	12	265.822	-	-	9	1	1	SCARA3|CCDS34871.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCARA3|CCDS34871.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	11	15	11	0	0	./.	3	2	3	2	15	15	15	15	3	2	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749768583	8	95241105	AT	A	300	PASS	-	-	-	-	-	Del	-	D	95241105	95241109	1	12	269.434	-	-	3	1	1	-	-	./.	0	0	0	0	3	8	3	8	0	0	./.	2	3	3	6	42	44	42	44	3	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749769575	8	97321115	G	GT	300	PASS	PTDSS1	CCDS6271.1	r.?	-	-	Ins	intronic	I	97321115	97321124	1	6	266.424	-	-	8	1	1	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTDSS1|CCDS6271.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	5	0	5	0	35	39	35	39	5	0	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749770328	8	99095834	GCA	G	329	PASS	C8orf47	CCDS34929.1	r.?	-	-	Del	intronic	D	99095834	99095850	2	12	324.043	-	-	7	1	1	C8orf47|CCDS34929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C8orf47|CCDS34929.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	5	1	5	1	75	44	75	44	5	1	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749770346	8	99120004	A	AAT	629	PASS	HRSP12	CCDS6276.1	r.?	-	-	Ins	intronic	I	99120004	99120005	2	42	580.834	-	-	0	1	1	HRSP12|CCDS6276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HRSP12|CCDS6276.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	6	8	6	8	0	0	./.	6	5	2	0	53	40	53	41	8	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749772847	8	105177715	G	GT	300	PASS	RIMS2	ENST00000507740	r.?	-	-	Ins	intronic	I	105177715	105177725	1	10	265.822	-	-	9	1	1	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RIMS2|ENST00000507740|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	8	10	8	0	0	./.	4	1	4	1	48	50	49	50	4	1	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749776364	8	114602477	C	CGTATATGTACATATACATATGTGTACACATATACGTATATGTGTAT	360	PASS	-	-	-	-	-	Ins	-	I	114602477	114602488	46	15	157.875	-	-	0	1	-	-	-	./.	0	0	0	0	13	11	13	11	0	0	./.	2	4	0	0	46	72	47	72	2	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749780478	8	124620780	G	GTAT	687	PASS	-	-	-	-	-	Ins	-	I	124620780	124620785	3	54	678.614	-	-	1	1	1	-	-	./.	0	0	0	0	15	15	15	15	0	0	./.	5	8	7	8	42	40	42	40	7	8	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749784863	8	136680650	G	GAAAGGAAAGAAAGAAAGAAAGAAA	476	PASS	-	-	-	-	-	Ins	-	I	136680650	136680651	24	96	706.622	-	-	0	1	-	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	11	7	0	0	38	36	39	38	11	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749788019	8	146075639	AG	A	869	PASS	COMMD5	CCDS6436.1	r.1370delC	c.?	p.?	Del	3'UTR variant	D	146075639	146075643	1	70	808.904	-	-	3	1	1	COMMD5|CCDS6436.1|r.1370delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	COMMD5|CCDS6436.1|r.1370delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	9	11	9	11	0	0	./.	9	6	12	9	43	23	43	23	12	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749791276	9	10057862	C	CCA	420	PASS	PTPRD	CCDS43786.1	r.?	-	-	Ins	intronic	I	10057862	10057863	2	20	357.048	-	-	0	1	-	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	PTPRD|CCDS43786.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	4	12	4	0	0	./.	3	4	0	0	24	18	24	18	3	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749793919	9	18120451	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	18120451	18120459	1	30	480.305	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	10	0	0	./.	5	4	6	5	29	28	29	29	6	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749798462	9	32910134	CA	C	300	PASS	-	-	-	-	-	Del	-	D	32910134	32910137	1	10	270.516	-	-	2	1	1	-	-	./.	0	0	0	0	11	5	11	5	0	0	./.	4	1	6	3	25	18	25	18	6	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749799883	9	36253290	TA	T	269	PASS	GNE	CCDS47965.1	r.?	-	-	Del	intronic	D	36253290	36253295	1	12	266.903	-	-	4	1	1	GNE|CCDS47965.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNE|CCDS47965.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	2	3	3	3	20	26	20	26	3	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749802215	9	66484532	TG	T	507	PASS	-	-	-	-	-	Del	-	D	66484532	66484536	1	88	919.151	-	-	3	1	1	-	-	./.	0	0	0	0	43	43	43	43	0	0	./.	7	10	10	10	109	156	109	156	10	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749803673	9	68484586	GA	G	485	PASS	-	-	-	-	-	Del	-	D	68484586	68484588	1	150	1244.37	-	-	1	1	1	-	-	./.	0	0	0	0	112	81	112	81	0	0	./.	9	14	9	15	256	292	256	292	9	15	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749805066	9	72049654	AT	A	553	PASS	APBA1	CCDS6630.1	r.?	-	-	Del	intronic	D	72049654	72049662	1	40	593.93	-	-	7	1	1	APBA1|CCDS6630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APBA1|CCDS6630.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	8	11	8	0	0	./.	7	4	9	7	23	17	23	17	9	7	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749830779	X	13949010	G	GA	300	PASS	GPM6B	CCDS48084.1	r.?	-	-	Ins	intronic	I	13949010	13949020	1	12	265.874	-	-	9	1	1	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GPM6B|CCDS48084.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	2	3	2	3	38	29	38	30	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749833421	X	24676210	GGGCC	G	896	PASS	PCYT1B	ENST00000379145	r.?	-	-	Del	intronic	D	24676210	24676215	4	90	919.143	-	-	1	1	1	PCYT1B|ENST00000379145|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PCYT1B|ENST00000379145|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	13	9	13	0	0	./.	8	9	14	10	41	31	41	31	14	10	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749835631	X	34298832	CA	C	360	PASS	-	-	-	-	-	Del	-	D	34298832	34298839	1	15	323.022	-	-	6	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	2	4	5	6	18	23	18	23	5	6	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749838852	X	48152350	CA	C	583	PASS	SSX9	ENST00000407081	r.?	-	-	Del	downstream	D	48152350	48152358	1	30	588.294	-	-	7	1	1	SSX9|ENST00000407081|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SSX9|ENST00000407081|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	8	11	8	11	0	0	./.	2	9	2	14	26	30	26	30	2	14	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749840869	X	57951549	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	57951549	57951556	1	27	535.36	-	-	6	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	2	8	5	9	21	29	21	30	5	9	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749840988	X	61722976	TA	T	311	PASS	-	-	-	-	-	Del	-	D	61722976	61722978	1	20	1028.62	-	-	1	1	1	-	-	./.	0	0	0	0	33	8	33	8	0	0	./.	19	0	1	1	66	55	85	55	20	1	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749844701	X	78920272	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	78920272	78920279	1	20	373.548	-	-	6	1	1	-	-	./.	0	0	0	0	9	12	9	12	0	0	./.	3	4	5	5	22	26	22	26	5	5	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749845518	X	82321016	TA	T	989	PASS	-	-	-	-	-	Del	-	D	82321016	82321019	1	90	916.133	-	-	2	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	9	8	14	13	34	25	34	25	14	13	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749847662	X	90596174	AC	A	540	PASS	-	-	-	-	-	Del	-	D	90596174	90596180	1	28	487.242	-	-	5	1	1	-	-	./.	0	0	0	0	6	9	6	9	0	0	./.	6	3	8	4	24	16	24	16	8	4	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749857288	X	132238225	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	132238225	132238235	1	12	266.476	-	-	9	1	1	-	-	./.	0	0	0	0	7	9	7	9	0	0	./.	2	3	2	3	25	25	25	25	2	3	1	1	1	1	1	1	1	1
2731452	PD20400a	PD20400b	2749860695	X	146336925	CTTAA	CATT	776	PASS	MIR509-2	ENST00000390724	r.?	-	-	Complex	downstream	DI	146336926	146336929	4	70	0	-	-	0	1	1	MIR509-2|ENST00000390724|r.?|-|-|non_protein_coding:indel:5KB_downstream_variant|SO:0000011:SO:1000032:SO:0001633	MIR509-2|ENST00000390724|r.?|-|-|non_protein_coding:indel:5KB_downstream_variant|SO:0000011:SO:1000032:SO:0001633	./.	0	0	0	0	10	12	10	12	0	0	./.	9	6	0	0	27	27	27	27	9	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750931169	1	6752020	TGTAA	T	300	PASS	DNAJC11	CCDS87.1	r.?	-	-	Del	intronic	D	6752020	6752033	4	10	268.848	-	-	3	1	1	DNAJC11|CCDS87.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNAJC11|CCDS87.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	11	16	11	0	0	./.	1	4	4	5	21	27	21	27	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750939847	1	32257633	C	CTGCCA	834	PASS	SPOCD1	CCDS347.1	r.?	-	-	Ins	intronic	I	32257633	32257636	5	90	859.898	-	-	0	1	1	SPOCD1|CCDS347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPOCD1|CCDS347.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	8	9	9	9	28	37	28	37	9	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750941634	1	37882326	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	37882326	37882329	1	16	319.005	-	-	2	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	3	3	6	3	21	24	21	24	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750943175	1	41600092	GA	G	540	PASS	SCMH1	CCDS30688.1	r.?	-	-	Del	intronic	D	41600092	41600095	1	28	483.927	-	-	2	1	1	SCMH1|CCDS30688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SCMH1|CCDS30688.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	9	7	9	0	0	./.	6	3	8	7	28	35	28	35	8	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750943745	1	43587239	TGAG	T	294	PASS	-	-	-	-	-	Del	-	D	43587239	43587246	3	24	418.718	-	-	2	1	1	-	-	./.	0	0	0	0	7	12	7	12	0	0	./.	3	5	3	6	11	21	11	21	3	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750944883	1	46432258	GT	G	997	PASS	MAST2	CCDS41326.1	r.?	-	-	Del	intronic	D	46432258	46432260	1	78	900.838	-	-	1	1	1	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MAST2|CCDS41326.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	8	9	8	0	0	./.	5	12	6	14	16	26	16	26	6	14	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750953268	1	74528835	C	CA	300	PASS	LRRIQ3	CCDS41350.1	r.?	-	-	Ins	intronic	I	74528835	74528840	1	6	265.838	-	-	4	1	1	LRRIQ3|CCDS41350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRIQ3|CCDS41350.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	10	11	10	0	0	./.	5	0	0	1	25	20	26	21	5	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750971156	1	147712260	GGA	G	360	PASS	-	-	-	-	-	Del	-	D	147712260	147712277	2	12	320.21	-	-	8	1	-	-	-	./.	0	0	0	0	24	11	24	11	0	0	./.	5	1	6	3	68	60	68	60	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750978542	1	167149492	AC	A	360	PASS	-	-	-	-	-	Del	-	D	167149492	167149494	1	12	321.414	-	-	1	1	1	-	-	./.	0	0	0	0	15	8	15	8	0	0	./.	1	5	2	6	28	31	28	31	2	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750986262	1	189578321	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	189578321	189578331	1	12	258.011	-	-	9	1	1	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	3	2	3	37	44	37	45	2	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750987061	1	191988410	GA	G	480	PASS	-	-	-	-	-	Del	-	D	191988410	191988418	1	24	429.555	-	-	7	1	1	-	-	./.	0	0	0	0	6	12	6	12	0	0	./.	5	3	9	5	22	23	22	23	9	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750989108	1	198645552	ATCAG	A	840	PASS	PTPRC	CCDS1397.1	r.?	-	-	Del	intronic	D	198645552	198645562	4	48	751.571	-	-	2	1	1	PTPRC|CCDS1397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PTPRC|CCDS1397.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	3	11	3	13	21	30	21	30	3	13	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750989203	1	199047975	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	199047975	199047985	1	10	265.838	-	-	9	1	1	-	-	./.	0	0	0	0	16	11	16	11	0	0	./.	1	4	1	5	23	23	23	23	1	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750989972	1	200758993	A	AT	300	PASS	CAMSAP1L1	CCDS1404.1	r.?	-	-	Ins	intronic	I	200758993	200759001	1	10	265.838	-	-	7	1	1	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CAMSAP1L1|CCDS1404.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	17	9	17	0	0	./.	1	4	2	5	29	29	29	29	2	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750990675	1	202599006	G	GGC	265	PASS	SYT2	CCDS1427.1	r.?	-	-	Ins	intronic	I	202599006	202599008	2	20	356.519	-	-	0	1	1	SYT2|CCDS1427.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SYT2|CCDS1427.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	1	9	2	0	0	./.	3	4	7	10	18	20	19	23	7	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2750995646	1	215852074	ACG	A	360	PASS	USH2A	CCDS31025.1	r.?	-	-	Del	intronic	D	215852074	215852078	2	15	322.016	-	-	1	1	-	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	USH2A|CCDS31025.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	13	12	13	0	0	./.	4	2	6	3	29	25	29	25	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751001919	1	233937472	C	CATG	389	PASS	-	-	-	-	-	Ins	-	I	233937472	233937476	3	14	363.744	-	-	1	1	1	-	-	./.	0	0	0	0	6	7	6	7	0	0	./.	6	1	6	1	25	15	25	15	6	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751013547	10	14476658	TA	T	300	PASS	MIR1265	ENST00000408444	r.?	-	-	Del	upstream	D	14476658	14476662	1	12	249.957	-	-	3	1	1	MIR1265|ENST00000408444|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	MIR1265|ENST00000408444|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	13	10	13	10	0	0	./.	2	3	3	5	19	24	19	24	3	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751017780	10	26770479	T	TCATAGC	290	PASS	APBB1IP	CCDS31167.1	r.?	-	-	Ins	intronic	I	26770479	26770486	6	35	502.924	-	-	1	1	1	APBB1IP|CCDS31167.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	APBB1IP|CCDS31167.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	18	15	0	0	./.	6	4	6	4	26	17	26	17	6	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751027973	10	57165741	GA	G	900	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	57165741	57165743	1	72	809.474	-	-	1	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	8	7	9	10	23	24	23	24	9	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751038063	10	86630455	TA	T	420	PASS	-	-	-	-	-	Del	-	D	86630455	86630459	1	20	375.948	-	-	3	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	4	3	4	6	32	22	32	22	5	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751040688	10	94901735	AT	A	540	PASS	-	-	-	-	-	Del	-	D	94901735	94901739	1	18	485.684	-	-	3	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	8	1	10	2	36	16	36	16	10	2	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751060012	11	16463449	C	CT	420	PASS	SOX6	CCDS7821.1	r.?	-	-	Ins	intronic	I	16463449	16463453	1	20	374.209	-	-	3	1	1	SOX6|CCDS7821.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SOX6|CCDS7821.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	9	15	9	0	0	./.	4	3	6	3	28	15	28	15	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751064242	11	27599350	TC	T	300	PASS	BDNFOS	ENST00000501663	r.?	-	-	Del	intronic	D	27599350	27599353	1	10	270.302	-	-	2	1	1	BDNFOS|ENST00000501663|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	BDNFOS|ENST00000501663|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	4	11	4	0	0	./.	4	1	4	1	31	23	31	23	4	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751069202	11	42783694	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	42783694	42783703	1	14	373.607	-	-	8	1	1	-	-	./.	0	0	0	0	18	2	18	2	0	0	./.	6	1	7	1	27	2	27	2	7	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751082592	11	82534848	GA	G	540	PASS	PRCP	CCDS41695.1	r.?	-	-	Del	downstream	D	82534848	82534851	1	30	485.942	-	-	2	1	1	PRCP|CCDS41695.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	PRCP|CCDS41695.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	5	11	5	11	0	0	./.	5	4	7	4	22	27	22	27	7	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751084102	11	87302665	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	87302665	87302673	1	36	586.236	-	-	7	1	1	-	-	./.	0	0	0	0	6	16	6	16	0	0	./.	3	8	4	11	27	38	28	38	4	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751102361	12	13273489	G	GT	720	PASS	-	-	-	-	-	Ins	-	I	13273489	13273491	1	48	638.406	-	-	1	1	1	-	-	./.	0	0	0	0	9	11	9	11	0	0	./.	7	5	7	5	28	25	29	26	7	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751109777	12	33992532	TA	T	300	PASS	-	-	-	-	-	Del	-	D	33992532	33992539	1	12	270.267	-	-	6	1	1	-	-	./.	0	0	0	0	11	18	11	18	0	0	./.	2	3	2	3	11	18	11	18	2	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751109842	12	34363707	GA	G	540	PASS	AC046130.1	ENST00000501954	r.?	-	-	Del	upstream	D	34363707	34363713	1	10	486.481	-	-	5	1	1	AC046130.1|ENST00000501954|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	AC046130.1|ENST00000501954|r.?|-|-|non_protein_coding:deletion:5KB_upstream_variant|SO:0000011:SO:0000159:SO:0001635	./.	0	0	0	0	9	12	9	12	0	0	./.	0	9	4	12	17	27	17	27	4	12	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751112462	12	46762145	C	CAAGG	478	PASS	SLC38A2	CCDS8749.1	r.?	-	-	Ins	intronic	I	46762145	46762146	4	28	464.807	-	-	0	1	1	SLC38A2|CCDS8749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLC38A2|CCDS8749.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	14	11	14	0	0	./.	3	6	5	6	21	30	21	30	5	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751114181	12	51501131	TGAAATGA	T	435	PASS	TFCP2	CCDS8808.1	r.1177-9_1177-3delucauuuc	c.718-9_718-3deltcatttc	p.?	Del	splice region	D	51501131	51501144	7	60	808.393	-	-	1	1	1	TFCP2|CCDS8808.1|r.1177-9_1177-3delucauuuc|c.718-9_718-3deltcatttc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	TFCP2|CCDS8808.1|r.1177-9_1177-3delucauuuc|c.718-9_718-3deltcatttc|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	11	15	11	15	0	0	./.	4	11	5	13	19	24	19	24	5	13	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751117379	12	61589807	C	CTATTA	720	PASS	-	-	-	-	-	Ins	-	I	61589807	61589811	5	40	612.517	-	-	0	1	1	-	-	./.	0	0	0	0	9	13	9	14	0	0	./.	9	3	10	4	26	23	27	23	10	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751119963	12	69654832	TTGC	T	569	PASS	MIR1279	CCDS8988.1	r.?	-	-	Del	intronic	D	69654832	69654840	3	27	538.728	-	-	2	1	1	MIR1279|CCDS8988.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MIR1279|CCDS8988.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	7	9	7	0	0	./.	2	8	4	10	14	25	14	25	4	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751131803	12	107520517	A	AATCTTT	406	PASS	-	-	-	-	-	Ins	-	I	107520517	107520518	6	60	705.573	-	-	0	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	9	5	8	5	31	14	33	14	9	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751141100	12	132349282	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	132349282	132349292	1	12	267.257	-	-	9	1	1	-	-	./.	0	0	0	0	16	6	16	6	0	0	./.	2	3	2	3	26	33	28	33	2	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751153934	13	53307809	CT	C	540	PASS	LECT1	CCDS45051.1	r.?	-	-	Del	intronic	D	53307809	53307811	1	30	480.622	-	-	1	1	1	LECT1|CCDS45051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LECT1|CCDS45051.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	15	12	15	0	0	./.	5	4	7	6	22	25	22	25	7	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751154951	13	56733827	T	TA	360	PASS	-	-	-	-	-	Ins	-	I	56733827	56733835	1	16	321.017	-	-	7	1	1	-	-	./.	0	0	0	0	9	9	9	9	0	0	./.	3	3	5	6	29	26	29	26	5	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751157601	13	64545532	C	CT	840	PASS	-	-	-	-	-	Ins	-	I	64545532	64545541	1	60	750.444	-	-	8	1	1	-	-	./.	0	0	0	0	10	8	11	8	0	0	./.	9	5	10	6	24	25	24	25	10	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751158721	13	68333193	T	TA	420	PASS	-	-	-	-	-	Ins	-	I	68333193	68333202	1	20	373.416	-	-	8	1	1	-	-	./.	0	0	0	0	8	14	8	14	0	0	./.	4	3	6	4	19	22	19	22	6	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751172424	13	109655462	AC	A	600	PASS	MYO16	CCDS32008.1	r.?	-	-	Del	intronic	D	109655462	109655464	1	36	535.429	-	-	1	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	7	14	7	0	0	./.	5	5	7	10	21	22	21	22	7	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751174070	14	19013468	A	AA	360	PASS	-	-	-	-	-	Ins	-	I	19013466	19013469	1	7	321.777	-	-	2	1	1	-	-	./.	0	0	0	0	38	73	38	74	0	0	./.	0	6	0	1	48	169	48	169	0	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751186519	14	56017236	CA	C	1080	PASS	-	-	-	-	-	Del	-	D	56017236	56017245	1	91	974.361	-	-	8	1	1	-	-	./.	0	0	0	0	13	15	13	15	0	0	./.	6	12	6	12	21	34	21	34	6	12	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751188158	14	61338216	T	TA	900	PASS	MNAT1	CCDS9750.1	r.?	-	-	Ins	intronic	I	61338216	61338218	1	60	804.442	-	-	1	1	1	MNAT1|CCDS9750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MNAT1|CCDS9750.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	10	8	10	0	0	./.	4	11	4	11	28	27	30	27	4	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751188578	14	62434980	G	GA	360	PASS	-	-	-	-	-	Ins	-	I	62434980	62434990	1	7	321.175	-	-	9	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	0	6	0	6	25	48	25	49	0	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751190645	14	69597287	G	GT	720	PASS	DCAF5	CCDS32106.1	r.?	-	-	Ins	intronic	I	69597287	69597289	1	48	643.554	-	-	1	1	1	DCAF5|CCDS32106.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DCAF5|CCDS32106.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	7	5	8	7	25	28	25	28	8	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751191839	14	72981970	C	CA	300	PASS	RGS6	CCDS9808.1	r.?	-	-	Ins	intronic	I	72981970	72981971	1	12	266.943	-	-	0	1	1	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RGS6|CCDS9808.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	11	15	11	0	0	./.	2	3	4	6	18	35	18	35	4	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751196664	14	86758411	A	AT	900	PASS	-	-	-	-	-	Ins	-	I	86758411	86758418	1	66	802.636	-	-	6	1	1	-	-	./.	0	0	0	0	16	13	16	13	0	0	./.	5	10	7	11	19	29	19	29	7	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751200060	14	96858208	A	ACCC	269	PASS	AK7	CCDS9945.1	r.?	-	-	Ins	upstream	I	96858208	96858215	3	6	260.923	-	-	6	1	-	AK7|CCDS9945.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	AK7|CCDS9945.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	6	5	6	5	0	0	./.	0	5	0	7	6	23	6	23	0	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751204756	15	22377523	TCTA	T	385	PASS	OR4N4	CCDS32173.1	r.?	-	-	Del	upstream	D	22377523	22377529	3	24	488.374	-	-	1	1	1	OR4N4|CCDS32173.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	OR4N4|CCDS32173.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	7	7	7	7	0	0	./.	2	7	5	7	19	20	19	21	5	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751205185	15	23240608	GTCT	G	303	PASS	-	-	-	-	-	Del	-	D	23240608	23240619	3	20	378.642	-	-	3	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	4	3	4	5	15	19	15	19	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751218580	15	62791641	C	CA	660	PASS	-	-	-	-	-	Ins	-	I	62791641	62791649	1	42	589.074	-	-	7	1	1	-	-	./.	0	0	0	0	6	14	6	14	0	0	./.	6	5	7	7	24	25	24	25	7	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751228862	15	94411814	TG	T	480	PASS	-	-	-	-	-	Del	-	D	94411814	94411818	1	25	431.099	-	-	3	1	1	-	-	./.	0	0	0	0	15	13	15	13	0	0	./.	4	4	4	10	18	27	18	27	4	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751238664	16	17658364	C	CA	420	PASS	-	-	-	-	-	Ins	-	I	17658364	17658373	1	20	373.2	-	-	8	1	1	-	-	./.	0	0	0	0	10	6	10	6	0	0	./.	3	4	7	6	27	19	29	19	7	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751242725	16	28527828	T	TA	629	PASS	-	-	-	-	-	Ins	-	I	28527828	28527836	1	42	590.241	-	-	7	1	1	-	-	./.	0	0	0	0	14	10	15	10	0	0	./.	6	5	9	6	23	28	24	29	9	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751252428	16	72022914	GT	G	300	PASS	PKD1L3	ENST00000335106	r.?	-	-	Del	intronic	D	72022914	72022920	1	12	271.302	-	-	5	1	1	PKD1L3|ENST00000335106|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PKD1L3|ENST00000335106|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	12	13	12	0	0	./.	2	3	3	3	15	21	15	21	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751259461	17	3578355	ACGGAGT	A	435	PASS	P2RX5	CCDS11034.1	r.?	-	-	Del	intronic	D	3578355	3578363	6	70	811.674	-	-	1	1	1	P2RX5|CCDS11034.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	P2RX5|CCDS11034.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	12	15	12	0	0	./.	6	9	7	12	30	28	30	28	7	12	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751271740	17	39049610	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	39049610	39049611	1	12	266.946	-	-	0	1	1	-	-	./.	0	0	0	0	10	8	10	8	0	0	./.	3	2	4	5	13	14	13	14	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751275470	17	49879946	AAAC	A	329	PASS	CA10	CCDS32684.1	r.?	-	-	Del	intronic	D	49879946	49879953	3	7	319.853	-	-	2	1	-	CA10|CCDS32684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CA10|CCDS32684.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	12	6	12	0	0	./.	6	0	11	0	48	32	48	32	11	0	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751277522	17	54568479	CTAATTACTACCTG	C	319	PASS	ENSG00000236302	ENST00000431215	r.?	-	-	Del	upstream	D	54568479	54568512	13	40	595.228	-	-	2	1	1	ENSG00000236302|ENST00000431215|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	ENSG00000236302|ENST00000431215|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	11	11	11	11	0	0	./.	4	7	5	8	42	45	42	45	5	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751280869	17	60488053	AAG	A	300	PASS	ENSG00000172421	CCDS45751.1	r.?	-	-	Del	intronic	D	60488053	60488072	2	12	270.558	-	-	9	1	1	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000172421|CCDS45751.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	3	14	3	0	0	./.	3	2	4	2	58	18	58	18	4	2	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751281483	17	61608301	TG	T	300	PASS	KCNH6	CCDS11638.1	r.?	-	-	Del	intronic	D	61608301	61608311	1	12	269.956	-	-	9	1	1	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNH6|CCDS11638.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	10	13	10	0	0	./.	3	2	3	3	55	59	55	59	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751282962	17	64299616	C	CG	300	PASS	PRKCA	CCDS11664.1	r.?	-	-	Ins	intronic	I	64299616	64299621	1	6	267.548	-	-	4	1	1	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PRKCA|CCDS11664.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	5	7	5	7	0	0	./.	5	0	7	1	50	59	50	60	7	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751284596	17	66622138	T	TC	329	PASS	-	-	-	-	-	Ins	-	I	66622138	66622139	1	12	319.251	-	-	0	1	1	-	-	./.	0	0	0	0	10	10	10	11	0	0	./.	5	1	5	7	70	58	73	58	5	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751287558	17	72679043	C	CA	300	PASS	RAB37	CCDS11703.1	r.?	-	-	Ins	intronic	I	72679043	72679053	1	12	267.548	-	-	9	1	1	RAB37|CCDS11703.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RAB37|CCDS11703.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	15	22	15	0	0	./.	2	3	3	3	48	51	48	52	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751296802	18	11508082	A	AAAT	329	PASS	-	-	-	-	-	Ins	-	I	11508082	11508086	3	15	312.41	-	-	1	1	1	-	-	./.	0	0	0	0	9	12	10	12	0	0	./.	2	4	2	4	23	17	23	17	2	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751307297	18	48145870	A	AT	660	PASS	MAPK4	CCDS42437.1	r.?	-	-	Ins	intronic	I	48145870	48145879	1	42	584.994	-	-	8	1	-	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MAPK4|CCDS42437.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	6	5	7	6	35	29	36	29	7	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751307661	18	49283318	AGT	A	300	PASS	-	-	-	-	-	Del	-	D	49283318	49283333	2	10	271.38	-	-	7	1	1	-	-	./.	0	0	0	0	10	13	10	13	0	0	./.	4	1	4	1	24	21	24	21	4	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751312810	18	64554462	TTAAAATTTG	T	261	PASS	-	-	-	-	-	Del	-	D	64554462	64554476	9	30	487.279	-	-	1	1	1	-	-	./.	0	0	0	0	4	10	4	10	0	0	./.	4	5	3	5	12	25	13	25	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751318419	19	2164029	CGCG	C	298	PASS	DOT1L	CCDS42460.1	r.?	-	-	Del	upstream	D	2164029	2164053	3	15	310.386	-	-	7	1	-	DOT1L|CCDS42460.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	DOT1L|CCDS42460.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	5	7	5	7	0	0	./.	2	4	2	4	25	27	25	27	2	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751336759	19	45425619	AG	A	749	PASS	APOC1	CCDS12648.1	r.?	-	-	Del	downstream	D	45425619	45425622	1	50	703.91	-	-	2	1	1	APOC1|CCDS12648.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	APOC1|CCDS12648.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	11	16	11	16	0	0	./.	4	9	7	10	28	22	28	22	7	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751346458	2	11211854	T	TA	1020	PASS	-	-	-	-	-	Ins	-	I	11211854	11211858	1	78	904.585	-	-	3	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	12	5	12	7	25	24	26	24	12	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751349830	2	22474257	GA	G	329	PASS	-	-	-	-	-	Del	-	D	22474257	22474260	1	7	322.878	-	-	2	1	1	-	-	./.	0	0	0	0	12	10	12	10	0	0	./.	0	6	2	8	6	26	6	26	2	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751351579	2	27489834	C	CAT	720	PASS	SLC30A3	CCDS1743.1	r.?	-	-	Ins	upstream	I	27489834	27489841	2	45	630.704	-	-	3	1	1	SLC30A3|CCDS1743.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	SLC30A3|ENST00000426924|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	14	17	14	0	0	./.	8	4	9	6	28	29	28	31	9	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751353148	2	32342173	C	CA	360	PASS	SPAST	CCDS1778.1	r.?	-	-	Ins	intronic	I	32342173	32342179	1	16	319.265	-	-	5	1	1	SPAST|CCDS1778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SPAST|CCDS1778.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	4	14	4	14	0	0	./.	3	3	4	10	12	28	12	28	4	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751361557	2	58976283	T	TTA	300	PASS	-	-	-	-	-	Ins	-	I	58976283	58976287	2	12	263.044	-	-	1	1	1	-	-	./.	0	0	0	0	14	9	14	9	0	0	./.	2	3	11	7	21	17	21	17	11	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751362760	2	62723179	CT	C	420	PASS	TMEM17	CCDS1871.1	r.?	-	-	Del	downstream	D	62723179	62723188	1	18	376.69	-	-	8	1	1	TMEM17|CCDS1871.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	TMEM17|CCDS1871.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	12	13	12	13	0	0	./.	2	5	3	6	15	20	15	20	3	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751369918	2	85696280	T	TG	480	PASS	-	-	-	-	-	Ins	-	I	85696280	85696289	1	24	414.85	-	-	8	1	-	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	5	3	6	3	29	20	30	20	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751371189	2	90121156	A	AT	537	PASS	-	-	-	-	-	Ins	-	I	90121156	90121165	1	54	690.537	-	-	8	1	1	-	-	./.	0	0	0	0	6	13	6	13	0	0	./.	5	8	5	10	27	29	27	29	5	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751376639	2	110102009	C	CA	720	PASS	SH3RF3	ENST00000309415	r.?	-	-	Ins	intronic	I	110102009	110102017	1	49	638.53	-	-	7	1	1	SH3RF3|ENST00000309415|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SH3RF3|ENST00000309415|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	12	8	12	0	0	./.	6	6	6	9	20	34	20	35	6	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751382517	2	130241236	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	130241236	130241244	1	12	262.442	-	-	7	1	1	-	-	./.	0	0	0	0	9	14	9	14	0	0	./.	3	2	5	3	22	21	22	22	5	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751383150	2	132439357	AC	A	677	PASS	-	-	-	-	-	Del	-	D	132439357	132439360	1	45	645.755	-	-	2	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	8	4	9	7	29	22	29	22	9	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751385045	2	137797863	T	TATTTTGA	493	PASS	THSD7B	ENST00000409968	r.?	-	-	Ins	intronic	I	137797863	137797871	7	88	843.175	-	-	1	1	1	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	THSD7B|ENST00000409968|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	8	14	8	0	0	./.	7	10	7	10	27	33	27	34	7	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751389206	2	151069860	AATTT	A	538	PASS	-	-	-	-	-	Del	-	D	151069860	151069865	4	35	533.915	-	-	1	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	6	4	7	6	27	25	27	25	7	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751391102	2	157021682	A	AG	1080	PASS	-	-	-	-	-	Ins	-	I	157021682	157021686	1	100	956.591	-	-	3	1	1	-	-	./.	0	0	0	0	12	22	12	22	0	0	./.	9	9	11	9	25	21	25	21	11	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751404060	2	198253828	AG	A	840	PASS	SF3B1	CCDS33356.1	r.?	-	-	Del	downstream	D	198253828	198253831	1	60	752.779	-	-	2	1	1	SF3B1|CCDS33356.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	SF3B1|CCDS33356.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	9	13	9	13	0	0	./.	5	9	6	12	19	30	19	30	6	12	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751420046	20	3523465	TTG	T	300	PASS	ATRN	CCDS13053.1	r.?	-	-	Del	intronic	D	3523465	3523469	2	6	260.101	-	-	1	1	1	ATRN|CCDS13053.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRN|CCDS13053.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	4	7	4	7	0	0	./.	5	0	11	1	27	15	27	15	11	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751436038	20	49434976	CCT	C	300	PASS	BCAS4	CCDS33487.1	r.?	-	-	Del	intronic	D	49434976	49434992	2	12	270.938	-	-	7	1	-	BCAS4|CCDS33487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAS4|CCDS33487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	10	12	10	0	0	./.	2	3	3	3	31	24	31	24	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751436297	20	50102747	C	CA	300	PASS	NFATC2	CCDS33488.1	r.?	-	-	Ins	intronic	I	50102747	50102751	1	6	267.326	-	-	3	1	1	NFATC2|CCDS33488.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NFATC2|CCDS33488.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	17	7	17	7	0	0	./.	5	0	9	9	146	134	146	134	9	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751436573	20	50336284	AG	A	360	PASS	ATP9A	CCDS33489.1	r.?	-	-	Del	intronic	D	50336284	50336293	1	15	325.126	-	-	8	1	1	ATP9A|CCDS33489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATP9A|CCDS33489.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	3	7	3	7	0	0	./.	4	2	16	9	182	145	182	145	16	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751436834	20	50513677	AAG	A	505	PASS	-	-	-	-	-	Del	-	D	50513677	50513681	2	12	563.553	-	-	1	1	-	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	11	0	32	0	197	29	197	29	32	0	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751437518	20	51114477	G	GA	960	PASS	-	-	-	-	-	Ins	-	I	51114477	51114487	1	77	854.359	-	-	9	1	1	-	-	./.	0	0	0	0	14	16	14	16	0	0	./.	10	6	18	7	229	171	232	176	18	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751438034	20	51842973	GTA	G	840	PASS	TSHZ2	CCDS33490.1	r.?	-	-	Del	intronic	D	51842973	51842977	2	60	755.014	-	-	1	1	-	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TSHZ2|CCDS33490.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	5	9	10	12	184	194	184	194	10	12	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751439044	20	52661761	A	AC	1140	PASS	BCAS1	CCDS13444.1	r.?	-	-	Ins	intronic	I	52661761	52661762	1	110	1008.49	-	-	0	1	-	BCAS1|CCDS13444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BCAS1|CCDS13444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	16	9	16	0	0	./.	9	10	12	15	221	263	225	266	12	15	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751439156	20	52771478	TAAAAAAAAAAAAAAAAA	T	348	PASS	CYP24A1	CCDS33491.1	r.?	-	-	Del	intronic	D	52771478	52771523	17	13	616.536	-	-	2	1	-	CYP24A1|CCDS33491.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	CYP24A1|CCDS33491.1|r.?|-|-|protein_coding:three_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000205:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	4	9	4	0	0	./.	0	12	2	15	103	98	103	101	2	19	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751440015	20	53939679	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	53939679	53939689	1	6	267.928	-	-	9	1	1	-	-	./.	0	0	0	0	14	14	14	14	0	0	./.	0	5	0	6	135	144	135	148	0	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751441602	20	56023779	GCA	G	329	PASS	-	-	-	-	-	Del	-	D	56023779	56023795	2	15	305.258	-	-	7	1	-	-	-	./.	0	0	0	0	19	16	19	16	0	0	./.	2	4	2	9	125	133	125	133	2	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751442050	20	56989205	GGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCT	G	266	PASS	VAPB	CCDS33498.1	r.?	-	-	Del	intronic	D	56989205	56989291	48	35	532.845	-	-	1	1	1	VAPB|CCDS33498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VAPB|CCDS33498.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	5	10	5	0	0	./.	4	6	0	0	64	66	64	68	4	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751442308	20	57465342	AGGGCGCCGAGGAGGGCGCCGTCGG	A	1102	PASS	GNAS	CCDS46622.1	r.?	-	-	Del	intronic	D	57465342	57465387	24	384	2047.09	-	-	1	1	1	GNAS|CCDS46622.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNAS|CCDS46622.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	5	9	5	0	0	./.	23	15	20	20	77	46	77	46	26	22	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751449094	21	16707878	GCTA	G	598	PASS	-	-	-	-	-	Del	-	D	16707878	16707884	3	36	598.684	-	-	1	1	1	-	-	./.	0	0	0	0	10	17	10	17	0	0	./.	3	8	3	9	14	26	14	26	3	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751449968	21	19443374	A	AT	300	PASS	CHODL	ENST00000400128	r.?	-	-	Ins	intronic	I	19443374	19443381	1	10	269.119	-	-	6	1	1	CHODL|ENST00000400128|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CHODL|ENST00000400128|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	8	17	0	0	./.	1	4	2	6	23	27	24	27	2	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751451591	21	23569178	CT	C	540	PASS	-	-	-	-	-	Del	-	D	23569178	23569183	1	30	486.22	-	-	4	1	1	-	-	./.	0	0	0	0	14	13	14	13	0	0	./.	5	4	6	6	29	31	29	31	6	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751463652	22	24771361	TTGACAAAATAATGACAATATCCAGCAGTATATTAAAGAGGATTATACACCC	T	319	PASS	CYTSA	CCDS33619.1	r.?	-	-	Del	intronic	D	24771361	24771417	51	36	601.569	-	-	1	1	1	CYTSA|CCDS33619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CYTSA|CCDS33619.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	11	20	11	0	0	./.	3	8	1	0	13	4	15	12	3	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751471105	22	50268957	C	CT	600	PASS	ZBED4	CCDS33677.1	r.?	-	-	Ins	intronic	I	50268957	50268959	1	32	540.86	-	-	1	1	1	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	ZBED4|CCDS33677.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	13	8	13	0	0	./.	3	7	5	11	19	25	19	26	5	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751472652	3	3444932	C	CAT	420	PASS	-	-	-	-	-	Ins	-	I	3444932	3444943	2	18	369	-	-	5	1	1	-	-	./.	0	0	0	0	4	15	4	15	0	0	./.	2	5	4	5	17	30	17	30	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751475216	3	11186097	A	ATCTATAGGTATATATACCTATAGACGTATAGACATACG	377	PASS	HRH1	CCDS2604.1	r.?	-	-	Ins	intronic	I	11186097	11186115	38	50	390.879	-	-	0	1	-	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	10	14	14	0	0	./.	9	4	0	0	38	31	43	40	9	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751490651	3	60454977	TTC	T	300	PASS	FHIT	CCDS2894.1	r.?	-	-	Del	intronic	D	60454977	60454993	2	12	268.388	-	-	7	1	1	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FHIT|CCDS2894.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	3	2	3	2	31	22	31	22	3	2	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751495076	3	74983627	CTGTT	C	398	PASS	-	-	-	-	-	Del	-	D	74983627	74983635	4	34	1777.5	-	-	1	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	33	0	28	0	59	13	64	13	33	0	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751500782	3	95467707	GAC	G	480	PASS	-	-	-	-	-	Del	-	D	95467707	95467715	2	25	431.348	-	-	3	1	1	-	-	./.	0	0	0	0	8	11	8	11	0	0	./.	4	4	8	5	23	25	23	25	8	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751506135	3	113212326	TATTAACTCATTTTACTCTCATAAAACCCTATAAGTACAATTACTATTTTACAGATCAGTAAACTGAAACTCACAGACATTAAGTAACTAGCCCAGAGTAACACTAATAGATTGCCAAGCCGGAATTCAAACCTTACATGAAAAACTAATGATGTTTCTAGAAGATTAAGATAAACAATGAACTACACACAC	T	348	PASS	CCDC52	CCDS2973.1	r.?	-	-	Del	intronic	D	113212326	113212523	191	48	647.022	-	-	1	1	1	CCDC52|CCDS2973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC52|CCDS2973.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	13	6	13	0	0	./.	7	5	0	0	22	18	29	23	7	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751508936	3	122209104	AG	A	749	PASS	KPNA1	CCDS3013.1	r.?	-	-	Del	intronic	D	122209104	122209107	1	56	697.93	-	-	2	1	1	KPNA1|CCDS3013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KPNA1|CCDS3013.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	11	11	11	0	0	./.	6	7	7	9	28	28	28	34	7	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751518018	3	152075111	CTTT	C	629	PASS	MBNL1	CCDS3165.1	r.?	-	-	Del	intronic	D	152075111	152075117	3	42	590.093	-	-	5	1	1	MBNL1|CCDS3165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MBNL1|CCDS3165.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	5	11	5	0	0	./.	5	6	7	7	26	28	26	28	7	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751520607	3	161479828	GAAATTTCAACATTTTTACATACATGCAAAGTGATTACACACAGGT	GGGC	261	PASS	-	-	-	-	-	Complex	-	DI	161479829	161479873	45	28	0	-	-	0	1	1	-	-	./.	0	0	0	0	12	5	12	5	0	0	./.	6	3	0	0	20	22	23	24	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751526355	3	179937641	AAG	A	360	PASS	-	-	-	-	-	Del	-	D	179937641	179937661	2	12	322.909	-	-	9	1	1	-	-	./.	0	0	0	0	19	11	19	11	0	0	./.	1	5	1	5	19	26	19	26	1	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751526504	3	180526808	G	GT	360	PASS	CCDC39	ENST00000471307	r.?	-	-	Ins	intronic	I	180526808	180526818	1	15	319.898	-	-	9	1	1	CCDC39|ENST00000471307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	CCDC39|ENST00000471307|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	17	9	17	0	0	./.	2	4	2	5	27	41	27	42	2	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751528794	3	187032784	AAGAG	A	509	PASS	-	-	-	-	-	Del	-	D	187032784	187032792	4	30	485.266	-	-	3	1	1	-	-	./.	0	0	0	0	14	17	14	17	0	0	./.	4	5	6	9	21	15	21	15	6	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751536211	4	11052224	A	AAC	300	PASS	-	-	-	-	-	Ins	-	I	11052224	11052244	2	12	259.881	-	-	9	1	-	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	3	2	6	6	31	27	31	27	6	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751546851	4	43246116	T	TGC	300	PASS	-	-	-	-	-	Ins	-	I	43246116	43246118	2	12	258.677	-	-	0	1	1	-	-	./.	0	0	0	0	6	7	6	8	0	0	./.	3	2	5	7	18	19	18	19	5	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751557247	4	77045926	T	TG	300	PASS	NUP54	CCDS3576.1	r.?	-	-	Ins	intronic	I	77045926	77045936	1	6	265.299	-	-	9	1	1	NUP54|CCDS3576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NUP54|CCDS3576.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	7	6	7	6	0	0	./.	5	0	5	1	19	17	19	18	5	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751558870	4	82584603	C	CTTTAA	267	PASS	-	-	-	-	-	Ins	-	I	82584603	82584613	5	15	304.753	-	-	1	1	1	-	-	./.	0	0	0	0	11	6	12	6	0	0	./.	2	4	2	6	14	19	14	19	2	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751562261	4	94336024	T	TA	540	PASS	GRID2	CCDS3637.1	r.?	-	-	Ins	intronic	I	94336024	94336027	1	28	479.706	-	-	2	1	1	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	GRID2|CCDS3637.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	5	13	5	0	0	./.	6	3	9	5	18	9	18	9	9	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751572211	4	127994406	C	CTAG	389	PASS	-	-	-	-	-	Ins	-	I	127994406	127994410	3	20	364.676	-	-	1	1	1	-	-	./.	0	0	0	0	11	11	11	11	0	0	./.	4	3	5	6	19	21	19	21	5	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751582490	4	161438537	C	CT	420	PASS	-	-	-	-	-	Ins	-	I	161438537	161438544	1	18	373.105	-	-	6	1	1	-	-	./.	0	0	0	0	10	3	10	3	0	0	./.	5	2	5	5	24	11	24	11	5	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751590997	4	185371990	ATTTG	A	300	PASS	IRF2	CCDS3835.1	r.?	-	-	Del	intronic	D	185371990	185372013	4	12	269.514	-	-	5	1	-	IRF2|CCDS3835.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	IRF2|CCDS3835.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	13	15	13	0	0	./.	3	2	3	2	27	14	27	14	3	2	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751598270	5	11819542	AAGACAGACAGAC	A	435	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11819542	11819575	12	70	809.592	-	-	8	1	-	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	20	14	20	0	0	./.	6	9	6	8	20	24	20	26	7	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751598670	5	13325206	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	13325206	13325213	1	21	426.966	-	-	6	1	1	-	-	./.	0	0	0	0	9	18	9	18	0	0	./.	6	2	9	4	24	22	25	23	9	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751599712	5	16643549	A	AT	540	PASS	-	-	-	-	-	Ins	-	I	16643549	16643559	1	30	480.337	-	-	9	1	1	-	-	./.	0	0	0	0	10	10	10	10	0	0	./.	5	4	10	5	22	21	22	21	10	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751603308	5	26904036	G	GT	780	PASS	CDH9	CCDS3893.1	r.?	-	-	Ins	intronic	I	26904036	26904042	1	50	693.218	-	-	5	1	1	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDH9|CCDS3893.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	7	10	9	0	0	./.	4	9	5	9	17	31	17	31	5	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751603457	5	27372407	TTAGCATTTGTTTCATTTTGTTTTTCCAATTCAGAACGTTTCTATTGGGTCTCTCCTGGAAACTA	T	261	PASS	-	-	-	-	-	Del	-	D	27372407	27372474	64	30	484.551	-	-	1	1	1	-	-	./.	0	0	0	0	8	10	8	10	0	0	./.	4	5	0	0	17	9	21	14	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751617078	5	75163505	AG	A	720	PASS	-	-	-	-	-	Del	-	D	75163505	75163507	1	33	647.072	-	-	1	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	10	2	13	3	34	20	34	20	13	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751617810	5	77440245	TA	T	509	PASS	AP3B1	CCDS4041.1	r.?	-	-	Del	intronic	D	77440245	77440250	1	28	485.755	-	-	4	1	1	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AP3B1|CCDS4041.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	9	16	9	0	0	./.	6	3	8	3	24	24	24	24	8	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751617870	5	77642196	TAA	T	660	PASS	-	-	-	-	-	Del	-	D	77642196	77642202	2	40	593.701	-	-	5	1	1	-	-	./.	0	0	0	0	11	7	11	7	0	0	./.	4	7	7	10	26	29	26	29	7	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751619698	5	82819454	TG	T	780	PASS	VCAN	CCDS4060.1	r.?	-	-	Del	intronic	D	82819454	82819456	1	54	701.646	-	-	1	1	1	VCAN|CCDS4060.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VCAN|CCDS4060.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	11	10	11	0	0	./.	8	5	12	6	31	26	31	26	12	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751623885	5	98450646	CCA	C	300	PASS	-	-	-	-	-	Del	-	D	98450646	98450665	2	12	266.252	-	-	9	1	-	-	-	./.	0	0	0	0	12	14	12	14	0	0	./.	2	3	3	3	25	31	25	31	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751625356	5	103250650	C	CAT	480	PASS	-	-	-	-	-	Ins	-	I	103250650	103250667	2	25	420.945	-	-	8	1	1	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	4	4	6	4	30	15	31	15	6	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751627995	5	112386766	G	GGT	420	PASS	MCC	CCDS4111.1	r.?	-	-	Ins	intronic	I	112386766	112386772	2	18	368.177	-	-	2	1	1	MCC|CCDS4111.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MCC|CCDS4111.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	11	6	11	6	0	0	./.	2	5	4	7	17	28	18	29	4	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751630767	5	121943508	GA	G	600	PASS	-	-	-	-	-	Del	-	D	121943508	121943514	1	36	539.728	-	-	5	1	1	-	-	./.	0	0	0	0	14	11	14	11	0	0	./.	5	5	9	7	27	17	27	17	9	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751631215	5	123228296	AAT	A	540	PASS	-	-	-	-	-	Del	-	D	123228296	123228300	2	28	481.541	-	-	1	1	1	-	-	./.	0	0	0	0	8	9	8	9	0	0	./.	6	3	8	9	21	27	21	27	8	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751631916	5	125410057	TA	T	809	PASS	-	-	-	-	-	Del	-	D	125410057	125410067	1	48	748.394	-	-	9	1	1	-	-	./.	0	0	0	0	16	20	16	20	0	0	./.	11	3	15	3	38	19	38	19	15	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751651547	6	6283750	TAAT	TTA	600	PASS	F13A1	CCDS4496.1	r.?	-	-	Complex	intronic	DI	6283751	6283753	3	35	0	-	-	0	1	1	F13A1|CCDS4496.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	F13A1|CCDS4496.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	6	15	6	15	0	0	./.	4	6	0	0	22	39	22	39	4	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751653344	6	10059663	C	CAATGTTT	261	PASS	OFCC1	ENST00000485268	r.?	-	-	Ins	intronic	I	10059663	10059671	7	28	447.523	-	-	1	1	1	OFCC1|ENST00000485268|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	OFCC1|ENST00000485268|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	11	12	11	0	0	./.	6	3	6	3	37	31	37	31	6	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751653594	6	10525476	AAGC	A	1016	PASS	GCNT2	CCDS34338.1	r.?	-	-	Del	upstream	D	10525476	10525481	3	110	1024.84	-	-	1	1	1	GCNT2|CCDS34338.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	GCNT2|CCDS34338.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	7	13	7	0	0	./.	9	10	11	14	31	49	31	49	11	14	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751653867	6	11034634	TGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACTTGAGGTCTGGAGTTGAACACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTA	T	261	PASS	ELOVL2	CCDS4518.1	r.?	-	-	Del	intronic	D	11034634	11034785	135	24	483.646	-	-	1	1	1	ELOVL2|CCDS4518.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ELOVL2|CCDS4518.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	9	5	9	0	0	./.	2	7	0	0	25	21	26	25	2	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751659531	6	23611244	G	GGCACA	658	PASS	-	-	-	-	-	Ins	-	I	23611244	23611250	5	45	609.942	-	-	1	1	1	-	-	./.	0	0	0	0	10	14	10	14	0	0	./.	8	4	8	4	41	26	41	26	8	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751670649	6	48084102	AT	A	1320	PASS	-	-	-	-	-	Del	-	D	48084102	48084108	1	143	1186.66	-	-	5	1	1	-	-	./.	0	0	0	0	16	9	16	9	0	0	./.	10	12	16	14	36	30	36	30	16	14	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751671484	6	50769360	GT	G	300	PASS	-	-	-	-	-	Del	-	D	50769360	50769362	1	6	266.083	-	-	1	1	1	-	-	./.	0	0	0	0	12	8	12	8	0	0	./.	5	0	7	0	58	34	58	34	7	0	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751672877	6	54563098	C	CACAGGTG	261	PASS	-	-	-	-	-	Ins	-	I	54563098	54563106	7	30	447.523	-	-	1	1	1	-	-	./.	0	0	0	0	5	9	5	9	0	0	./.	5	4	5	6	29	36	31	38	5	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751683024	6	92539948	TATAA	T	418	PASS	-	-	-	-	-	Del	-	D	92539948	92539956	4	24	431.513	-	-	1	1	1	-	-	./.	0	0	0	0	11	12	11	12	0	0	./.	3	5	4	6	13	15	13	15	4	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751689662	6	117211403	C	CT	600	PASS	RFX6	CCDS5113.1	r.?	-	-	Ins	intronic	I	117211403	117211405	1	32	532.167	-	-	1	1	1	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	16	13	16	0	0	./.	7	3	9	5	31	25	32	25	9	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751701287	6	156422421	G	GA	600	PASS	-	-	-	-	-	Ins	-	I	156422421	156422426	1	35	533.371	-	-	4	1	1	-	-	./.	0	0	0	0	12	9	12	9	0	0	./.	6	4	8	5	33	18	33	18	8	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751712431	7	16900909	TTAA	T	658	PASS	AGR3	CCDS5365.1	r.?	-	-	Del	intronic	D	16900909	16900913	3	49	647.704	-	-	1	1	1	AGR3|CCDS5365.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AGR3|CCDS5365.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	13	11	13	0	0	./.	6	6	6	8	18	23	18	23	6	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751715120	7	25166593	G	GT	720	PASS	CYCS	CCDS5393.1	r.?	-	-	Ins	upstream	I	25166593	25166600	1	48	640.48	-	-	6	1	1	CYCS|CCDS5393.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	CYCS|CCDS5393.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	15	13	15	14	0	0	./.	7	5	7	8	24	28	24	28	7	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751728881	7	66568312	A	AG	660	PASS	TYW1	CCDS5538.1	r.?	-	-	Ins	intronic	I	66568312	66568314	1	36	587.106	-	-	1	1	1	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TYW1|CCDS5538.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	11	13	11	0	0	./.	8	3	10	4	25	23	25	24	10	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751741914	7	106433622	AGT	A	960	PASS	-	-	-	-	-	Del	-	D	106433622	106433627	2	81	863.606	-	-	2	1	1	-	-	./.	0	0	0	0	18	9	18	9	0	0	./.	8	8	9	8	26	33	26	33	9	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751743186	7	110769459	TTATATTTACTATATTATATGTTATATATATTATTACCATTATATATTACTA	T	348	PASS	LRRN3	CCDS5754.1	r.?	-	-	Del	downstream	D	110769459	110769514	51	45	647.704	-	-	1	1	-	LRRN3|CCDS5754.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	8	7	8	0	0	./.	8	4	0	0	4	15	12	19	8	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751749509	7	132462226	ATCT	A	629	PASS	-	-	-	-	-	Del	-	D	132462226	132462233	3	30	592.525	-	-	2	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	9	2	10	19	39	19	39	2	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751757494	7	155531649	TCTTACCAAGTGTATATTTCTTCTTGTATTGTAGGGTTACTATTAAAATACATAGCGATGGTAAACTTGAATCAACTATTTAAAAATACGTGGAATACGTATCTAAGCCAAAAACGGAAA	T	290	PASS	RBM33	CCDS5941.2	r.?	-	-	Del	intronic	D	155531649	155531769	119	35	538.549	-	-	1	1	1	RBM33|CCDS5941.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RBM33|CCDS5941.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	8	11	8	11	0	0	./.	6	4	0	0	11	18	17	22	6	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751760630	8	5175857	GA	G	480	PASS	-	-	-	-	-	Del	-	D	5175857	5175865	1	21	430.899	-	-	7	1	1	-	-	./.	0	0	0	0	14	8	14	8	0	0	./.	6	2	9	8	17	29	17	29	9	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751761216	8	6520242	G	GT	269	PASS	-	-	-	-	-	Ins	-	I	6520242	6520247	1	6	244.627	-	-	4	1	1	-	-	./.	0	0	0	0	16	12	16	12	0	0	./.	5	0	6	2	36	23	37	23	7	2	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751768856	8	27664857	TAA	T	900	PASS	ESCO2	CCDS34872.1	r.?	-	-	Del	downstream	D	27664857	27664863	2	72	807.936	-	-	5	1	1	ESCO2|CCDS34872.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ESCO2|ENST00000397418|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	12	9	12	0	0	./.	7	8	10	10	24	32	24	32	10	10	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751772830	8	39922541	A	AC	420	PASS	-	-	-	-	-	Ins	-	I	39922541	39922543	1	20	372.822	-	-	1	1	1	-	-	./.	0	0	0	0	6	13	7	13	0	0	./.	3	4	4	4	21	29	21	29	4	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751773589	8	42059113	CCTTCATCTGTGTTCGTAGAACAGTATCAACAGGAGCCATTATTTCCTGAATACAGGGTGATGTCTTTAA	C	319	PASS	PLAT	CCDS6126.1	r.?	-	-	Del	intronic	D	42059113	42059183	69	42	589.476	-	-	1	1	1	PLAT|CCDS6126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLAT|CCDS6126.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	6	5	0	0	16	15	22	20	6	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751776685	8	55587087	G	GGA	600	PASS	RP1	ENST00000427058	r.?	-	-	Ins	intronic	I	55587087	55587088	2	20	518.154	-	-	0	1	-	RP1|ENST00000427058|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RP1|ENST00000427058|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	12	14	12	14	0	0	./.	1	9	4	2	104	84	105	85	5	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751780277	8	62752584	G	GT	718	PASS	-	-	-	-	-	Ins	-	I	62752584	62752594	1	54	686.364	-	-	9	1	1	-	-	./.	0	0	0	0	10	12	10	12	0	0	./.	5	8	8	8	198	184	200	186	8	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751780645	8	63565840	CAG	C	660	PASS	NKAIN3	ENST00000328472	r.?	-	-	Del	intronic	D	63565840	63565858	2	40	590.078	-	-	8	1	1	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	10	10	10	10	0	0	./.	4	7	4	9	80	90	80	90	4	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751780695	8	63677823	AAAG	A	267	PASS	NKAIN3	ENST00000328472	r.?	-	-	Del	intronic	D	63677823	63677829	3	12	308.725	-	-	1	1	-	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NKAIN3|ENST00000328472|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	5	5	5	5	0	0	./.	1	5	6	16	78	58	78	58	6	17	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751781025	8	64200101	A	AT	393	PASS	-	-	-	-	-	Ins	-	I	64200101	64200111	1	20	371.016	-	-	9	1	1	-	-	./.	0	0	0	0	5	11	5	12	0	0	./.	3	4	4	4	42	96	44	98	4	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751786771	8	77184738	T	TA	269	PASS	-	-	-	-	-	Ins	-	I	77184738	77184748	1	12	266.302	-	-	9	1	1	-	-	./.	0	0	0	0	15	12	16	12	0	0	./.	3	2	4	3	57	73	57	74	4	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751787546	8	79079200	G	GAAAGAAAGAAAGAAAC	380	PASS	-	-	-	-	-	Ins	-	I	79079200	79079204	16	16	352.631	-	-	0	1	-	-	-	./.	0	0	0	0	9	4	9	4	0	0	./.	1	7	0	0	52	34	54	34	1	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751792041	8	89094394	GAC	G	300	PASS	MMP16	CCDS6246.1	r.?	-	-	Del	intronic	D	89094394	89094410	2	10	268.108	-	-	7	1	-	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MMP16|CCDS6246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	7	7	7	7	0	0	./.	1	4	2	5	49	67	49	67	2	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751797365	8	100430023	G	GT	300	PASS	VPS13B	CCDS6280.1	r.?	-	-	Ins	intronic	I	100430023	100430033	1	12	265.098	-	-	9	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	9	7	9	8	0	0	./.	3	2	3	3	50	61	51	61	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751801408	8	108968946	G	GA	600	PASS	RSPO2	CCDS6307.1	r.?	-	-	Ins	intronic	I	108968946	108968949	1	35	532.001	-	-	2	1	1	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	8	18	8	18	0	0	./.	4	6	6	11	59	64	59	64	6	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751801467	8	109096572	C	CT	600	PASS	RSPO2	CCDS6307.1	r.?	-	-	Ins	upstream	I	109096572	109096573	1	36	532.603	-	-	0	1	1	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	RSPO2|CCDS6307.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	15	10	15	10	0	0	./.	5	5	8	6	52	53	52	53	8	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751803817	8	114952236	TG	T	300	PASS	-	-	-	-	-	Del	-	D	114952236	114952238	1	6	260.281	-	-	1	1	1	-	-	./.	0	0	0	0	5	13	5	13	0	0	./.	5	0	6	0	46	52	46	52	6	0	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751806847	8	121470187	AG	A	420	PASS	MTBP	CCDS6333.1	r.?	-	-	Del	intronic	D	121470187	121470189	1	20	366.802	-	-	1	1	1	MTBP|CCDS6333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MTBP|CCDS6333.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	4	3	8	3	69	51	69	51	8	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751807011	8	121855841	AG	A	269	PASS	-	-	-	-	-	Del	-	D	121855841	121855843	1	6	253.056	-	-	1	1	-	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	5	0	11	0	54	57	54	57	11	0	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751810538	8	128801528	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	128801528	128801538	1	20	371.016	-	-	9	1	1	-	-	./.	0	0	0	0	11	14	11	14	0	0	./.	4	3	5	3	63	67	63	67	5	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751810585	8	128883205	GCCT	G	269	PASS	PVT1	CCDS3617.1	r.?	-	-	Del	intronic	D	128883205	128883225	3	12	268.71	-	-	6	1	1	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	PVT1|CCDS3617.1|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	11	9	11	9	0	0	./.	2	3	3	3	67	50	67	50	3	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751812895	8	134563835	AAGAAAGAAAGAAAGAAAGAAAGAAAG	A	337	PASS	ST3GAL1	CCDS6373.1	r.?	-	-	Del	intronic	D	134563835	134563864	26	12	323.174	-	-	1	1	-	ST3GAL1|CCDS6373.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	ST3GAL1|CCDS6373.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	12	6	12	6	0	0	./.	5	1	0	0	50	35	50	35	5	1	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751816708	8	143494712	ACACACGCAGACCCACACACACTCACACGCACACACACCACACATTCACACACACTCCTGCAATGCACACACGCAGACCCACACACACTCACACGCACACACACCACACATTCACACACACTCCTGCAATGCACACACGCAGACCCACACACACTCACACGCACACACACCACACATTCACACACTCCCGCAATGCACACATGCAGACCCACACACACACGTGCACACACCACACATTCACACACATTCCTGCAATGCACACACACAGACCCACACACACACTCTCACACACGCACACACACCACACAGTCACACACCCCTGCAATGCACACACGCACACACACATCTCACACAGCACACACACCACACAGTCACACACTCCTGAAATACACACAAGCAGACACACACGCACACACACCACACATTCACACACTCCTGAAATACACACACATGCACAGACACCCACATACGCACACGCACACACCACTCATTCACATTCTCTCACACACACATATGCACAGACATGCAGCATATGCACATACGTTCTCACACATACATGCACAGACATGTACACAGCACATGCAACACAGACACACACATTCTCATACACATGCACATGCTCCCTGAATAACACGTGCAGACACACAGTGCATGCACACACATATTTCTCACAGCCATGCACACACTCCCTTACACACATGCACAAATATCCCACACACAGCTCATGCACACATGCATGTTTTCACACAATGCACACACTCCCTCACATGCACATTCACACAGACACACGTTCCCACATGCATGTACACACTCCCCACACACATGAACACACCTCACAGAGTGCATGCACATGCACTCCCTTACATGCACAGACACGTGTGTTCACACATGCACACACTCCCTCACACAAGACATGCATGTTCTCACATACATGCACACACTCCCTCATATGCACAGAGATTCATGTT	A	261	PASS	-	-	-	-	-	Del	-	D	143494712	143495685	967	30	481.149	-	-	1	1	-	-	-	./.	0	0	0	0	8	3	8	3	0	0	./.	5	4	0	0	54	42	59	46	5	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751817474	8	145076751	GA	G	780	PASS	-	-	-	-	-	Del	-	D	145076751	145076761	1	54	695.997	-	-	9	1	1	-	-	./.	0	0	0	0	13	12	13	12	0	0	./.	8	5	10	8	74	63	74	63	10	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751840401	9	95032087	TA	T	360	PASS	IARS	CCDS6694.1	r.?	-	-	Del	intronic	D	95032087	95032089	1	15	324.791	-	-	1	1	1	IARS|CCDS6694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IARS|CCDS6694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	6	11	6	11	0	0	./.	4	2	5	3	19	13	19	13	5	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751855290	9	139940383	AGCAGCAGCC	A	348	PASS	NPDC1	CCDS7024.1	r.264_272delGGCUGCUGC	c.50_58delGGCTGCTGC	p.R17_L19delRLL	Del	inframe	D	139940383	139940406	9	48	647.173	-	-	2	1	-	NPDC1|CCDS7024.1|r.264_272delGGCUGCUGC|c.50_58delGGCTGCTGC|p.R17_L19delRLL|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	NPDC1|CCDS7024.1|r.264_272delGGCUGCUGC|c.50_58delGGCTGCTGC|p.R17_L19delRLL|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	14	11	14	11	0	0	./.	7	5	9	8	35	32	35	32	9	8	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751859976	X	19801862	TA	T	420	PASS	SH3KBP1	CCDS14193.1	r.?	-	-	Del	intronic	D	19801862	19801872	1	20	377.255	-	-	9	1	1	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SH3KBP1|CCDS14193.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	18	19	18	0	0	./.	4	3	7	4	22	23	22	23	7	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751862814	X	31514123	A	AT	420	PASS	DMD	CCDS14233.1	r.?	-	-	Ins	intronic	I	31514123	31514130	1	18	374.847	-	-	6	1	1	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DMD|CCDS14233.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	15	10	15	0	0	./.	2	5	2	5	22	23	23	23	2	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751863861	X	35944837	T	TC	720	PASS	CXorf22	CCDS14237.2	r.?	-	-	Ins	intronic	I	35944837	35944842	1	48	642.595	-	-	4	1	1	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CXorf22|CCDS14237.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	10	9	10	9	0	0	./.	7	5	11	6	27	24	27	24	11	6	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751865312	X	41953954	AT	A	420	PASS	-	-	-	-	-	Del	-	D	41953954	41953962	1	20	378.46	-	-	7	1	1	-	-	./.	0	0	0	0	16	5	16	5	0	0	./.	4	3	4	5	29	26	29	26	4	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751866041	X	45227072	ACT	A	660	PASS	-	-	-	-	-	Del	-	D	45227072	45227077	2	22	589.648	-	-	2	1	1	-	-	./.	0	0	0	0	14	10	14	10	0	0	./.	1	10	2	11	22	20	22	20	2	11	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751868856	X	57485643	G	GA	600	PASS	FAAH2	CCDS14375.1	r.?	-	-	Ins	intronic	I	57485643	57485647	1	35	535.496	-	-	3	1	1	FAAH2|CCDS14375.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAAH2|CCDS14375.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	9	13	9	0	0	./.	4	6	7	9	24	32	24	32	7	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751871789	X	76232753	G	GT	420	PASS	-	-	-	-	-	Ins	-	I	76232753	76232757	1	14	374.847	-	-	3	1	1	-	-	./.	0	0	0	0	6	8	6	8	0	0	./.	1	6	1	9	9	24	9	24	1	9	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751871896	X	76861543	CAATAACAAGTAATGAGATCAAAGTAATAA	C	261	PASS	ATRX	CCDS14434.1	r.?	-	-	Del	intronic	D	76861543	76861573	29	30	487.365	-	-	1	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	7	16	7	0	0	./.	5	4	4	3	15	18	15	19	5	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751871921	X	76958107	GA	G	360	PASS	ATRX	CCDS14434.1	r.?	-	-	Del	intronic	D	76958107	76958117	1	15	324.91	-	-	9	1	1	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRX|CCDS14434.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	9	14	9	14	0	0	./.	2	4	5	5	29	24	29	24	5	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751872408	X	78953094	TG	T	389	PASS	-	-	-	-	-	Del	-	D	78953094	78953096	1	18	374.245	-	-	1	1	1	-	-	./.	0	0	0	0	13	9	13	9	0	0	./.	5	2	5	3	19	23	19	23	5	3	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751872876	X	80645803	CTGAGCATGTGTGAATGCAGAG	C	261	PASS	-	-	-	-	-	Del	-	D	80645803	80645829	21	30	487.365	-	-	1	1	1	-	-	./.	0	0	0	0	13	7	13	7	0	0	./.	5	4	4	3	11	19	12	20	5	4	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751872943	X	81137976	A	AT	420	PASS	-	-	-	-	-	Ins	-	I	81137976	81137986	1	18	373.643	-	-	9	1	1	-	-	./.	0	0	0	0	11	13	11	13	0	0	./.	2	5	3	5	21	27	22	27	3	5	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751879936	X	113773691	TTAAGTCCTTACAAAAAAAACAGAGAAGTATAAATGACTTTATAATTGTACATTCCTTGTCCTTTCTTTTCTTAATTACTATAAAAGCAATTGTGTTAAATATGCATATAAGTATACTTTTGGCCATATAATATTA	T	261	PASS	-	-	-	-	-	Del	-	D	113773691	113773827	135	24	487.365	-	-	1	1	1	-	-	./.	0	0	0	0	7	14	7	14	0	0	./.	2	7	0	0	12	14	14	21	2	7	1	1	1	1	1	1	1	1
2731394	PD20401a	PD20401b	2751888797	X	152174430	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	152174430	152174445	2	12	270.758	-	-	7	1	1	-	-	./.	0	0	0	0	10	11	10	11	0	0	./.	3	2	4	2	24	16	24	16	4	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791403390	1	2065844	AC	A	900	PASS	PRKCZ	CCDS37.1	r.?	-	-	Del	intronic	D	2065844	2065846	1	70	801.633	-	-	1	1	1	PRKCZ|CCDS37.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PRKCZ|CCDS37.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	6	9	8	10	31	30	31	30	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791411794	1	17940976	C	CAG	840	PASS	ARHGEF10L	CCDS182.1	r.?	-	-	Ins	intronic	I	17940976	17940980	2	63	731.333	-	-	1	1	1	ARHGEF10L|CCDS182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGEF10L|CCDS182.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	19	23	21	0	0	./.	8	6	10	9	32	27	33	27	10	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791416629	1	26681745	CT	C	780	PASS	AIM1L	ENST00000374207	r.?	-	-	Del	upstream	D	26681745	26681747	1	54	694.146	-	-	1	1	1	AIM1L|ENST00000374207|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	AIM1L|ENST00000374207|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	17	18	17	18	0	0	./.	5	8	5	9	20	25	20	25	5	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791417197	1	27584174	T	TA	830	PASS	WDTC1	CCDS296.1	r.?	-	-	Ins	intronic	I	27584174	27584176	1	63	738.558	-	-	1	1	1	WDTC1|CCDS296.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	WDTC1|CCDS296.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	16	21	18	0	0	./.	8	6	13	8	40	32	41	32	13	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791417471	1	28148873	T	TC	900	PASS	STX12	CCDS310.1	r.989_990insc	c.?	p.?	Ins	3'UTR variant	I	28148873	28148875	1	52	792	-	-	1	1	1	STX12|CCDS310.1|r.989_990insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	STX12|CCDS310.1|r.989_990insc|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	14	28	14	28	0	0	./.	12	3	16	5	38	21	39	21	16	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791420617	1	34032266	TA	T	1109	PASS	CSMD2	CCDS380.1	r.?	-	-	Del	intronic	D	34032266	34032268	1	104	1015.4	-	-	1	1	1	CSMD2|CCDS380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CSMD2|CCDS380.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	32	28	32	0	0	./.	7	12	10	13	23	48	23	48	10	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791421726	1	36487485	C	CT	300	PASS	EIF2C3	CCDS399.1	r.?	-	-	Ins	intronic	I	36487485	36487495	1	12	264.201	-	-	9	1	1	EIF2C3|CCDS399.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	EIF2C3|CCDS399.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	20	28	20	0	0	./.	2	3	3	4	42	48	42	49	3	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791421896	1	36746904	TC	T	900	PASS	THRAP3	CCDS405.1	r.?	-	-	Del	intronic	D	36746904	36746906	1	70	801.633	-	-	1	1	1	THRAP3|CCDS405.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THRAP3|CCDS405.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	20	26	20	0	0	./.	9	6	10	9	41	38	41	38	10	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791423413	1	39809695	G	GAGA	660	PASS	MACF1	CCDS436.1	r.?	-	-	Ins	intronic	I	39809695	39809700	3	42	567.996	-	-	1	1	1	MACF1|CCDS436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MACF1|CCDS436.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	25	19	25	0	0	./.	6	5	9	9	42	35	42	35	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791425416	1	43687252	AACAGGCT	A	464	PASS	ENSG00000164012	ENST00000372492	r.?	-	-	Del	intronic	D	43687252	43687263	7	56	854.473	-	-	1	1	1	ENSG00000164012|ENST00000372492|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000164012|ENST00000372492|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	29	18	29	0	0	./.	3	13	4	13	20	43	20	43	4	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791427222	1	46704715	TC	T	900	PASS	-	-	-	-	-	Del	-	D	46704715	46704721	1	72	801.633	-	-	5	1	1	-	-	./.	0	0	0	0	27	27	27	27	0	0	./.	7	8	10	9	34	31	34	31	10	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791429262	1	51654146	T	TTG	1200	PASS	-	-	-	-	-	Ins	-	I	51654146	51654150	2	117	1041.75	-	-	1	1	1	-	-	./.	0	0	0	0	30	25	30	25	0	0	./.	12	8	15	10	43	33	45	34	15	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791437632	1	68882398	AATATAAGTC	A	406	PASS	-	-	-	-	-	Del	-	D	68882398	68882410	9	60	748.191	-	-	1	1	1	-	-	./.	0	0	0	0	31	21	31	21	0	0	./.	9	5	10	5	43	29	43	29	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791437706	1	69039953	TGGTTTGAATATTGTCCTCAAAAGTTCCTGTATCACAAACTAAATAGTCATTGGAATACTATTAAGA	T	290	PASS	-	-	-	-	-	Del	-	D	69039953	69040022	66	36	534.422	-	-	1	1	1	-	-	./.	0	0	0	0	31	30	31	30	0	0	./.	5	5	0	0	25	24	30	29	5	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791437941	1	69767236	TA	T	780	PASS	-	-	-	-	-	Del	-	D	69767236	69767238	1	56	694.146	-	-	1	1	1	-	-	./.	0	0	0	0	23	32	23	32	0	0	./.	6	7	8	12	29	50	29	50	8	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791439263	1	73051597	TTTATAAATA	T	290	PASS	-	-	-	-	-	Del	-	D	73051597	73051608	9	32	534.422	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	3	7	5	8	26	44	26	44	5	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791440098	1	74850279	CT	C	1200	PASS	TNNI3K	CCDS44161.1	r.?	-	-	Del	intronic	D	74850279	74850281	1	117	1068.84	-	-	1	1	1	TNNI3K|CCDS44161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNNI3K|CCDS44161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	38	29	38	0	0	./.	8	12	12	15	40	46	40	46	12	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791444068	1	84071249	TTAAATAACTTTGA	T	435	PASS	-	-	-	-	-	Del	-	D	84071249	84071263	13	70	801.633	-	-	1	1	1	-	-	./.	0	0	0	0	29	26	29	26	0	0	./.	9	6	10	6	35	27	35	27	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791445037	1	86150009	CAT	C	840	PASS	ZNHIT6	CCDS707.1	r.?	-	-	Del	intronic	D	86150009	86150013	2	60	748.191	-	-	1	1	1	ZNHIT6|CCDS707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNHIT6|CCDS707.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	19	18	19	0	0	./.	5	9	7	10	30	32	30	32	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791445125	1	86311599	G	GA	960	PASS	COL24A1	CCDS41353.1	r.?	-	-	Ins	intronic	I	86311599	86311603	1	81	844.84	-	-	3	1	1	COL24A1|CCDS41353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	COL24A1|CCDS41353.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	35	28	35	0	0	./.	8	8	8	10	31	40	31	40	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791447519	1	92037034	AG	A	900	PASS	-	-	-	-	-	Del	-	D	92037034	92037036	1	66	798.021	-	-	1	1	1	-	-	./.	0	0	0	0	21	26	21	26	0	0	./.	10	5	13	7	38	31	38	31	13	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791448832	1	94137013	TGCCAATACCCGTCAG	T	348	PASS	BCAR3	CCDS745.1	r.?	-	-	Del	intronic	D	94137013	94137039	15	48	637.092	-	-	1	1	1	BCAR3|CCDS745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BCAR3|CCDS745.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	20	27	20	0	0	./.	5	7	5	9	33	26	33	26	5	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791449055	1	94693274	T	TA	540	PASS	ARHGAP29	CCDS748.1	r.?	-	-	Ins	intronic	I	94693274	94693278	1	30	474.959	-	-	3	1	1	ARHGAP29|CCDS748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARHGAP29|CCDS748.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	17	20	18	0	0	./.	5	4	8	11	37	36	37	37	8	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791450438	1	98037122	AG	A	480	PASS	DPYD	CCDS30777.1	r.?	-	-	Del	intronic	D	98037122	98037124	1	24	427.538	-	-	1	1	1	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPYD|CCDS30777.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	28	24	28	0	0	./.	3	5	8	5	21	30	21	30	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791451425	1	100560921	AC	A	540	PASS	SASS6	CCDS764.1	r.?	-	-	Del	intronic	D	100560921	100560924	1	28	479.776	-	-	2	1	1	SASS6|CCDS764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SASS6|CCDS764.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	18	22	18	0	0	./.	3	6	9	13	33	45	33	45	9	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791452015	1	101697714	CCTC	CTG	937	PASS	S1PR1	CCDS777.1	r.?	-	-	Complex	upstream	DI	101697715	101697717	3	80	0	-	-	0	1	1	S1PR1|CCDS777.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	S1PR1|CCDS777.1|r.?|-|-|protein_coding:indel:5KB_upstream_variant|SO:0000010:SO:1000032:SO:0001635	./.	0	0	0	0	9	16	14	26	0	0	./.	7	9	0	0	16	25	21	38	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791452384	1	102524126	GC	G	720	PASS	-	-	-	-	-	Del	-	D	102524126	102524129	1	49	637.092	-	-	2	1	1	-	-	./.	0	0	0	0	36	22	36	22	0	0	./.	6	6	7	6	33	27	33	27	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791453993	1	106278966	TGA	T	397	PASS	-	-	-	-	-	Del	-	D	106278966	106278984	2	20	373.493	-	-	8	1	1	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	3	4	3	5	38	55	38	55	3	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791455685	1	109964063	CA	C	480	PASS	PSMA5	CCDS799.1	r.?	-	-	Del	intronic	D	109964063	109964066	1	24	424.527	-	-	2	1	1	PSMA5|CCDS799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSMA5|CCDS799.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	20	20	20	0	0	./.	5	3	8	10	38	33	38	33	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791464036	1	143985009	TC	T	441	PASS	-	-	-	-	-	Del	-	D	143985009	143985011	1	60	801.031	-	-	1	1	1	-	-	./.	0	0	0	0	38	50	38	50	0	0	./.	11	4	15	5	117	107	117	107	15	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791464416	1	144859886	AT	A	1047	PASS	PDE4DIP	CCDS30824.1	r.6387delA	c.6197delA	p.N2066fs*56	Del	frameshift	D	144859886	144859889	1	110	1015.4	-	-	2	1	1	PDE4DIP|CCDS30824.1|r.6387delA|c.6197delA|p.N2066fs*56|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	PDE4DIP|CCDS30824.1|r.6387delA|c.6197delA|p.N2066fs*56|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	47	57	47	57	0	0	./.	10	9	20	15	106	121	106	121	20	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791464709	1	145089999	CGTT	C	623	PASS	-	-	-	-	-	Del	-	D	145089999	145090005	3	63	748.191	-	-	1	1	1	-	-	./.	0	0	0	0	67	82	67	82	0	0	./.	8	6	8	7	151	162	151	162	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791465287	1	145651246	T	TA	329	PASS	RNF115	CCDS922.1	r.?	-	-	Ins	intronic	I	145651246	145651254	1	15	316.439	-	-	7	1	1	RNF115|CCDS922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RNF115|CCDS922.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	13	31	13	31	0	0	./.	2	4	3	4	75	75	76	76	3	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791469221	1	151468921	TA	T	269	PASS	-	-	-	-	-	Del	-	D	151468921	151468927	1	6	266.609	-	-	5	1	1	-	-	./.	0	0	0	0	2	33	2	33	0	0	./.	0	5	0	23	0	82	0	83	0	23	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791471651	1	155008104	T	TA	600	PASS	DCST2	CCDS1082.2	r.?	-	-	Ins	upstream	I	155008104	155008112	1	20	516.962	-	-	7	1	1	DCST2|CCDS1082.2|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	DCST1|CCDS1083.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	27	26	27	0	0	./.	9	1	16	3	81	70	84	71	16	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791472697	1	156081149	AG	A	1740	PASS	LMNA	CCDS1129.1	r.?	-	-	Del	upstream	D	156081149	156081151	1	228	1540.19	-	-	1	1	1	LMNA|CCDS1129.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	LMNA|CCDS1131.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	21	28	21	0	0	./.	11	18	15	24	65	74	65	74	15	24	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791477614	1	164753314	AT	A	989	PASS	PBX1	CCDS1246.1	r.?	-	-	Del	intronic	D	164753314	164753316	1	84	908.517	-	-	1	1	1	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PBX1|CCDS1246.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	23	26	23	0	0	./.	11	6	14	8	74	49	74	49	14	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791478008	1	165589239	TTC	T	360	PASS	-	-	-	-	-	Del	-	D	165589239	165589257	2	15	320.653	-	-	8	1	-	-	-	./.	0	0	0	0	18	26	18	26	0	0	./.	4	2	4	2	46	65	46	65	4	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791479002	1	167330358	GAATCTTTATATAATTTTACTTCTGCTTTTCCTATTTAGATGCTGTT	G	435	PASS	POU2F1	CCDS1259.1	r.?	-	-	Del	intronic	D	167330358	167330405	46	72	801.633	-	-	1	1	1	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	27	20	27	0	0	./.	8	7	4	4	62	71	66	74	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791479022	1	167355304	CAAAATTTA	C	464	PASS	POU2F1	CCDS1259.1	r.?	-	-	Del	intronic	D	167355304	167355316	8	72	855.075	-	-	1	1	1	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU2F1|CCDS1259.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	38	17	38	0	0	./.	5	11	6	14	67	84	67	84	6	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791480020	1	168991744	TG	T	780	PASS	-	-	-	-	-	Del	-	D	168991744	168991748	1	50	693.544	-	-	3	1	1	-	-	./.	0	0	0	0	15	42	15	42	0	0	./.	4	9	4	13	42	97	42	97	4	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791480998	1	170942257	TAC	T	269	PASS	C1orf129	CCDS41436.1	r.?	-	-	Del	intronic	D	170942257	170942274	2	12	267.211	-	-	8	1	-	C1orf129|CCDS41436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C1orf129|CCDS41436.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	22	20	22	0	0	./.	3	2	3	2	46	25	46	25	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791482843	1	174208999	T	TC	1620	PASS	RABGAP1L	CCDS1314.1	r.?	-	-	Ins	intronic	I	174208999	174209001	1	190	1426.68	-	-	1	1	1	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RABGAP1L|CCDS1314.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	36	32	36	32	0	0	./.	9	18	17	27	64	85	66	85	17	27	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791484214	1	176683062	TA	T	1380	PASS	PAPPA2	CCDS41438.1	r.?	-	-	Del	intronic	D	176683062	176683065	1	144	1229.17	-	-	2	1	1	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PAPPA2|CCDS41438.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	12	31	12	0	0	./.	15	8	19	12	67	75	67	75	19	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791484853	1	178204734	CGT	C	420	PASS	RASAL2	CCDS1321.1	r.?	-	-	Del	intronic	D	178204734	178204753	2	18	369.881	-	-	9	1	-	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RASAL2|CCDS1321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	15	32	15	0	0	./.	2	5	2	5	66	62	66	62	2	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791485256	1	178750147	T	TTA	600	PASS	RALGPS2	CCDS1325.1	r.?	-	-	Ins	intronic	I	178750147	178750163	2	35	520.575	-	-	7	1	-	RALGPS2|CCDS1325.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RALGPS2|CCDS1325.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	30	23	30	0	0	./.	4	6	6	8	66	74	69	76	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791485987	1	179538564	TG	T	621	PASS	NPHS2	CCDS1331.1	r.?	-	-	Del	intronic	D	179538564	179538566	1	49	638.296	-	-	1	1	1	NPHS2|CCDS1331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NPHS2|CCDS1331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	17	31	17	0	0	./.	6	6	9	8	75	40	75	40	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791487350	1	181632356	GTAAAT	G	1074	PASS	CACNA1E	ENST00000367573	r.?	-	-	Del	intronic	D	181632356	181632362	5	126	1122.29	-	-	1	1	1	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1E|ENST00000367573|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	22	32	22	0	0	./.	8	13	10	16	46	57	46	57	10	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791491487	1	188795285	G	GT	600	PASS	-	-	-	-	-	Ins	-	I	188795285	188795288	1	27	528.401	-	-	2	1	1	-	-	./.	0	0	0	0	27	37	28	37	0	0	./.	2	8	7	10	61	79	61	80	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791493582	1	192516575	A	AT	4080	PASS	-	-	-	-	-	Ins	-	I	192516575	192516583	1	1216	3584.1	-	-	7	1	1	-	-	./.	0	0	0	0	34	29	35	32	0	0	./.	37	31	53	35	86	70	86	71	53	35	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791494062	1	193267967	C	CT	358	PASS	-	-	-	-	-	Ins	-	I	193267967	193267969	1	14	369.881	-	-	1	1	1	-	-	./.	0	0	0	0	26	12	26	12	0	0	./.	1	6	3	6	62	30	62	31	3	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791496510	1	197987850	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	197987850	197987868	2	12	267.211	-	-	8	1	1	-	-	./.	0	0	0	0	22	16	22	16	0	0	./.	3	2	3	2	49	46	49	46	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791498078	1	200374689	G	GA	960	PASS	ZNF281	CCDS1402.1	r.?	-	-	Ins	downstream	I	200374689	200374697	1	65	844.84	-	-	7	1	1	ZNF281|CCDS1402.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	ZNF281|CCDS1402.1|r.?|-|-|protein_coding:insertion:5KB_downstream_variant|SO:0000010:SO:0000667:SO:0001633	./.	0	0	0	0	24	31	24	31	0	0	./.	4	12	7	18	85	79	85	79	7	18	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791498947	1	201528920	CCTT	C	1405	PASS	-	-	-	-	-	Del	-	D	201528920	201528924	3	192	1385.28	-	-	1	1	1	-	-	./.	0	0	0	0	17	26	17	26	0	0	./.	15	11	18	14	51	48	51	48	18	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791500755	1	203871839	C	CT	749	PASS	-	-	-	-	-	Ins	-	I	203871839	203871844	1	56	686.922	-	-	4	1	1	-	-	./.	0	0	0	0	29	19	29	20	0	0	./.	7	6	9	11	89	68	89	68	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791502748	1	207184894	AT	A	1020	PASS	-	-	-	-	-	Del	-	D	207184894	207184902	1	84	898.884	-	-	7	1	-	-	-	./.	0	0	0	0	17	27	17	27	0	0	./.	11	6	20	14	55	62	55	62	20	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791503048	1	207858373	GA	G	360	PASS	ENSG00000249058	ENST00000508064	r.?	-	-	Del	intronic	D	207858373	207858377	1	15	320.653	-	-	3	1	1	ENSG00000249058|ENST00000508064|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000249058|ENST00000508064|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	39	31	39	0	0	./.	2	4	4	5	73	74	73	74	4	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791503939	1	209678404	CTAT	C	838	PASS	-	-	-	-	-	Del	-	D	209678404	209678414	3	72	801.633	-	-	3	1	1	-	-	./.	0	0	0	0	36	23	36	23	0	0	./.	7	8	7	11	72	69	72	69	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791511677	1	222449128	GC	G	840	PASS	-	-	-	-	-	Del	-	D	222449128	222449130	1	55	743.374	-	-	1	1	1	-	-	./.	0	0	0	0	20	38	20	38	0	0	./.	10	4	16	6	78	69	78	69	16	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791511705	1	222516188	CATTCTGTTTTCATTCACTCA	C	522	PASS	-	-	-	-	-	Del	-	D	222516188	222516210	20	96	961.357	-	-	1	1	1	-	-	./.	0	0	0	0	24	32	24	32	0	0	./.	11	7	12	7	53	73	53	73	12	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791512669	1	224163183	AC	A	350	PASS	-	-	-	-	-	Del	-	D	224163183	224163186	1	100	960.153	-	-	2	1	1	-	-	./.	0	0	0	0	17	19	17	19	0	0	./.	9	9	14	9	58	43	58	43	14	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791513321	1	224701065	A	AG	300	PASS	-	-	-	-	-	Ins	-	I	224701065	224701075	1	6	264.201	-	-	9	1	-	-	-	./.	0	0	0	0	11	4	11	4	0	0	./.	5	0	7	0	21	9	22	9	7	0	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791513825	1	225790789	T	TTC	1500	PASS	ENAH	CCDS31041.1	r.?	-	-	Ins	intronic	I	225790789	225790791	2	180	1305.95	-	-	0	1	1	ENAH|CCDS31041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENAH|CCDS31041.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	26	22	26	0	0	./.	14	11	20	15	81	64	81	64	20	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791517650	1	231885339	GT	G	540	PASS	DISC1	CCDS31055.1	r.?	-	-	Del	intronic	D	231885339	231885347	1	30	480.98	-	-	7	1	1	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DISC1|CCDS31055.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	23	26	23	0	0	./.	4	5	6	8	73	63	73	63	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791517973	1	232508018	TG	T	780	PASS	-	-	-	-	-	Del	-	D	232508018	232508023	1	56	693.544	-	-	4	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	6	7	6	8	46	58	46	58	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791518502	1	233489705	TTG	T	420	PASS	ENSG00000143674	CCDS1598.1	r.1396+5_1396+6delug	c.1135+5_1135+6deltg	p.?	Del	ess splice	D	233489705	233489725	2	14	372.891	-	-	9	1	1	ENSG00000143674|CCDS1598.1|r.1396+5_1396+6delug|c.1135+5_1135+6deltg|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	ENSG00000143674|CCDS1598.1|r.1396+5_1396+6delug|c.1135+5_1135+6deltg|p.?|protein_coding:CDS:extended_intronic_splice_region:extended_cis_splice_site:deletion:extended_intronic_splice_region_variant:extended_cis_splice_site_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:CGPX06:SO:0000159:SO:CGPX04:SO:CGPX03:SO:0001576	./.	0	0	0	0	30	29	30	29	0	0	./.	1	6	2	5	58	77	58	77	2	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791518941	1	234276640	CCTGGGTT	C	522	PASS	SLC35F3	CCDS1600.1	r.?	-	-	Del	intronic	D	234276640	234276648	7	99	960.153	-	-	1	1	1	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SLC35F3|CCDS1600.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	20	21	20	0	0	./.	10	8	13	15	52	46	52	46	13	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791520987	1	236719471	T	TA	569	PASS	HEATR1	CCDS31066.1	r.5557_5558insu	c.5442_5443insT	p.T1815fs*20	Ins	frameshift	I	236719471	236719473	1	35	527.197	-	-	1	1	1	HEATR1|CCDS31066.1|r.5557_5558insu|c.5442_5443insT|p.T1815fs*20|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	HEATR1|CCDS31066.1|r.5557_5558insu|c.5442_5443insT|p.T1815fs*20|protein_coding:CDS:exon:insertion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000667:SO:0001589	./.	0	0	0	0	20	21	20	21	0	0	./.	4	6	6	7	51	60	51	60	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791521551	1	237494053	G	GGA	660	PASS	RYR2	ENST00000366574	r.?	-	-	Ins	intronic	I	237494053	237494056	2	42	574.017	-	-	1	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	37	25	38	26	0	0	./.	6	5	9	6	78	59	78	59	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791521633	1	237620677	AT	A	840	PASS	RYR2	ENST00000366574	r.?	-	-	Del	intronic	D	237620677	237620683	1	60	748.191	-	-	5	1	1	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RYR2|ENST00000366574|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	36	26	36	0	0	./.	9	5	10	8	60	67	60	67	10	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791522990	1	239872147	CT	C	540	PASS	CHRM3	CCDS1616.1	r.?	-	-	Del	intronic	D	239872147	239872152	1	30	480.98	-	-	4	1	1	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	CHRM3|CCDS1616.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	22	23	22	0	0	./.	5	4	10	4	67	43	67	43	10	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791523149	1	240138589	A	AGAAC	358	PASS	-	-	-	-	-	Ins	-	I	240138589	240138591	4	20	357.238	-	-	0	1	1	-	-	./.	0	0	0	0	29	11	29	14	0	0	./.	3	4	0	0	63	42	71	53	3	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791523962	1	241115294	GA	G	600	PASS	RGS7	CCDS31071.1	r.?	-	-	Del	intronic	D	241115294	241115297	1	35	534.422	-	-	2	1	1	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RGS7|CCDS31071.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	25	26	25	0	0	./.	6	4	7	10	83	95	83	95	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791525232	1	242694597	AC	A	840	PASS	-	-	-	-	-	Del	-	D	242694597	242694599	1	63	748.191	-	-	1	1	1	-	-	./.	0	0	0	0	29	25	29	25	0	0	./.	6	8	9	12	65	79	65	79	9	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791525797	1	243559025	TG	T	840	PASS	SDCCAG8	CCDS31075.1	r.?	-	-	Del	intronic	D	243559025	243559027	1	60	748.191	-	-	1	1	1	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDCCAG8|CCDS31075.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	24	20	24	0	0	./.	9	5	11	8	80	89	80	89	11	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791528879	1	247519039	TTCACATTCCTGCAGAGGCTCA	T	261	PASS	-	-	-	-	-	Del	-	D	247519039	247519061	21	30	480.98	-	-	1	1	1	-	-	./.	0	0	0	0	26	24	26	24	0	0	./.	5	4	2	2	57	41	60	43	5	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791529069	1	247767309	A	AATAT	687	PASS	OR2G3	CCDS31093.1	r.?	-	-	Ins	upstream	I	247767309	247767313	4	54	659.829	-	-	1	1	1	OR2G3|CCDS31093.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	OR2G3|CCDS31093.1|r.?|-|-|protein_coding:insertion:2KB_upstream_variant|SO:0000010:SO:0000667:SO:0001636	./.	0	0	0	0	25	28	25	29	0	0	./.	8	5	9	8	88	86	89	86	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791532213	10	4623485	TC	T	360	PASS	-	-	-	-	-	Del	-	D	4623485	4623487	1	16	321.67	-	-	1	1	1	-	-	./.	0	0	0	0	26	20	26	20	0	0	./.	3	3	5	3	36	42	36	42	5	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791534066	10	7876566	CAGATTTTCCA	C	493	PASS	TAF3	CCDS41487.1	r.?	-	-	Del	intronic	D	7876566	7876578	10	88	913.104	-	-	1	1	1	TAF3|CCDS41487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TAF3|CCDS41487.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	29	24	29	0	0	./.	10	7	10	8	45	44	45	44	10	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791537403	10	13622524	GT	G	1260	PASS	-	-	-	-	-	Del	-	D	13622524	13622527	1	132	1127.35	-	-	2	1	1	-	-	./.	0	0	0	0	20	17	20	17	0	0	./.	11	10	13	11	39	36	39	36	13	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791538811	10	16226965	G	GTT	389	PASS	-	-	-	-	-	Ins	-	I	16226965	16226970	2	20	367.555	-	-	4	1	1	-	-	./.	0	0	0	0	20	31	20	31	0	0	./.	3	4	4	4	21	25	21	25	4	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791539312	10	17090771	AAAT	A	300	PASS	CUBN	CCDS7113.1	r.?	-	-	Del	intronic	D	17090771	17090792	3	10	268.56	-	-	6	1	-	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUBN|CCDS7113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	32	15	32	0	0	./.	1	4	1	4	33	28	33	28	1	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791540820	10	20291780	GACTGTCTC	G	290	PASS	PLXDC2	CCDS7132.1	r.?	-	-	Del	intronic	D	20291780	20291790	8	36	537.12	-	-	1	1	1	PLXDC2|CCDS7132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLXDC2|CCDS7132.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	22	22	22	0	0	./.	5	5	5	7	23	32	23	32	5	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791542424	10	23565243	A	AG	660	PASS	C10orf67	ENST00000376500	r.?	-	-	Ins	intronic	I	23565243	23565251	1	36	583.607	-	-	7	1	1	C10orf67|ENST00000376500|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf67|ENST00000376500|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	29	26	30	0	0	./.	3	8	10	11	32	30	32	31	10	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791545182	10	28732571	ATTCATCTTT	A	493	PASS	-	-	-	-	-	Del	-	D	28732571	28732581	9	70	913.104	-	-	1	1	1	-	-	./.	0	0	0	0	34	20	34	20	0	0	./.	13	4	16	5	50	33	50	33	16	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791549549	10	36752057	GA	G	420	PASS	-	-	-	-	-	Del	-	D	36752057	36752062	1	20	375.984	-	-	4	1	1	-	-	./.	0	0	0	0	19	20	19	20	0	0	./.	3	4	4	6	31	30	31	30	4	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791553859	10	44195027	T	TC	480	PASS	-	-	-	-	-	Ins	-	I	44195027	44195034	1	24	404.409	-	-	6	1	1	-	-	./.	0	0	0	0	23	8	23	8	0	0	./.	3	5	0	1	28	24	28	24	3	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791554122	10	44923493	CA	C	720	PASS	-	-	-	-	-	Del	-	D	44923493	44923495	1	45	643.942	-	-	1	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	4	8	8	10	37	43	37	43	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791558194	10	56728651	AT	A	780	PASS	PCDH15	ENST00000373957	r.?	-	-	Del	intronic	D	56728651	56728659	1	36	697.052	-	-	7	1	1	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PCDH15|ENST00000373957|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	25	18	25	0	0	./.	11	2	13	6	28	21	28	21	13	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791562549	10	66583985	CTCTATAACCAC	CCCT	406	PASS	-	-	-	-	-	Complex	-	DI	66583986	66583996	11	63	0	-	-	0	1	1	-	-	./.	0	0	0	0	22	30	22	30	0	0	./.	8	6	0	0	68	68	69	68	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791566799	10	74913849	AT	A	658	PASS	ECD	CCDS7321.1	r.?	-	-	Del	intronic	D	74913849	74913851	1	49	644.544	-	-	1	1	1	ECD|CCDS7321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ECD|CCDS7321.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	27	32	27	0	0	./.	6	6	9	10	47	53	47	53	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791569531	10	78756366	CAG	C	300	PASS	KCNMA1	CCDS7352.1	r.?	-	-	Del	intronic	D	78756366	78756383	2	12	266.754	-	-	8	1	1	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNMA1|CCDS7352.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	13	25	13	25	0	0	./.	2	3	3	4	50	68	50	68	3	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791577045	10	95445494	C	CA	269	PASS	C10orf4	CCDS7430.1	r.?	-	-	Ins	intronic	I	95445494	95445504	1	12	264.948	-	-	9	1	1	C10orf4|CCDS7430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C10orf4|CCDS7430.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	29	28	29	0	0	./.	2	3	0	2	46	28	46	28	2	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791585255	10	116888746	TCTGTA	TC	387	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Complex	intronic	DI	116888747	116888751	5	25	0	-	-	0	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	33	27	33	27	0	0	./.	4	4	0	0	27	25	27	25	4	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791585475	10	117512631	GA	G	637	PASS	ATRNL1	CCDS7592.1	r.?	-	-	Del	intronic	D	117512631	117512634	1	40	589.026	-	-	2	1	1	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ATRNL1|CCDS7592.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	41	23	41	0	0	./.	4	7	5	11	15	32	15	32	5	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791593823	11	2579152	TTCA	T	778	PASS	KCNQ1	CCDS7736.1	r.?	-	-	Del	intronic	D	2579152	2579157	3	63	751.927	-	-	1	1	1	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNQ1|CCDS7736.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	22	17	22	0	0	./.	8	6	9	8	34	29	34	29	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791595101	11	4990383	AG	A	780	PASS	MMP26	CCDS7752.1	r.?	-	-	Del	intronic	D	4990383	4990386	1	50	699.336	-	-	2	1	1	MMP26|CCDS7752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MMP26|CCDS7752.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	25	16	25	0	0	./.	9	4	10	7	41	35	41	35	10	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791595741	11	6039449	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	6039449	6039453	1	7	319.158	-	-	3	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	0	6	7	10	25	43	25	43	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791601412	11	18434276	CA	C	780	PASS	LDHC	CCDS7840.1	r.179delA	c.13delA	p.K5fs*4	Del	frameshift	D	18434276	18434279	1	26	699.336	-	-	2	1	1	LDHC|CCDS7840.1|r.179delA|c.13delA|p.K5fs*4|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	LDHC|CCDS7840.1|r.179delA|c.13delA|p.K5fs*4|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	20	25	20	25	0	0	./.	1	12	3	13	28	36	28	36	3	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791601750	11	18927168	TTGAGATTTCTTCTTCTATACTCTGC	T	493	PASS	MRGPRX1	ENST00000412783	r.?	-	-	Del	intronic	D	18927168	18927196	25	88	913.312	-	-	1	1	1	MRGPRX1|ENST00000412783|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRGPRX1|ENST00000412783|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	28	23	28	0	0	./.	7	10	7	10	38	41	38	41	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791606252	11	28441645	AG	A	660	PASS	-	-	-	-	-	Del	-	D	28441645	28441647	1	36	590.542	-	-	1	1	1	-	-	./.	0	0	0	0	22	40	22	40	0	0	./.	3	8	6	10	35	49	35	49	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791610364	11	38063647	TTAA	T	687	PASS	-	-	-	-	-	Del	-	D	38063647	38063651	3	56	699.336	-	-	1	1	1	-	-	./.	0	0	0	0	18	32	18	32	0	0	./.	6	7	8	7	40	43	40	43	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791610618	11	38713039	CAT	C	300	PASS	-	-	-	-	-	Del	-	D	38713039	38713055	2	12	268.373	-	-	7	1	1	-	-	./.	0	0	0	0	26	16	26	16	0	0	./.	3	2	3	2	48	37	48	37	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791612685	11	43079536	T	TG	540	PASS	-	-	-	-	-	Ins	-	I	43079536	43079538	1	28	478.737	-	-	1	1	1	-	-	./.	0	0	0	0	20	33	21	33	0	0	./.	6	3	8	5	41	33	41	33	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791612686	11	43082199	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	43082199	43082209	1	6	265.965	-	-	9	1	1	-	-	./.	0	0	0	0	25	24	25	24	0	0	./.	0	5	0	5	29	46	29	46	0	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791612920	11	43507768	CAAA	C	538	PASS	TTC17	CCDS31466.1	r.?	-	-	Del	intronic	D	43507768	43507774	3	35	537.951	-	-	5	1	1	TTC17|CCDS31466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC17|CCDS31466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	29	28	29	0	0	./.	4	6	4	7	25	37	25	37	4	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791616841	11	55182769	CAGA	C	1138	PASS	-	-	-	-	-	Del	-	D	55182769	55182777	3	117	1075.9	-	-	2	1	1	-	-	./.	0	0	0	0	27	34	27	34	0	0	./.	12	8	16	8	49	44	49	44	16	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791617080	11	55895355	TG	T	1200	PASS	OR8H3	CCDS31519.1	r.?	-	-	Del	downstream	D	55895355	55895357	1	96	1075.3	-	-	1	1	1	OR8H3|CCDS31519.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	OR8H3|CCDS31519.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	28	36	28	36	0	0	./.	5	15	8	20	35	58	35	58	8	20	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791617701	11	57289317	AC	A	600	PASS	-	-	-	-	-	Del	-	D	57289317	57289319	1	36	536.747	-	-	1	1	-	-	-	./.	0	0	0	0	20	20	20	20	0	0	./.	5	5	8	6	43	35	43	35	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791617831	11	57467844	AT	A	660	PASS	ZDHHC5	CCDS7965.1	r.3852delU	c.?	p.?	Del	3'UTR variant	D	57467844	57467852	1	42	591.746	-	-	7	1	1	ZDHHC5|CCDS7965.1|r.3852delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	ZDHHC5|CCDS7965.1|r.3852delU|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	23	17	23	17	0	0	./.	6	5	8	5	19	34	19	34	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791618023	11	57801310	CTA	C	480	PASS	OR9Q1	CCDS31543.1	r.?	-	-	Del	intronic	D	57801310	57801318	2	21	430.361	-	-	3	1	1	OR9Q1|CCDS31543.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	OR9Q1|CCDS31543.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	41	22	41	0	0	./.	2	6	3	8	25	27	25	27	3	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791618406	11	58823085	TAC	T	300	PASS	-	-	-	-	-	Del	-	D	58823085	58823100	2	10	260.546	-	-	7	1	-	-	-	./.	0	0	0	0	16	18	16	18	0	0	./.	4	1	4	1	28	25	28	25	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791624012	11	69368499	CCCTGGGTCTTACTTTGAGGCCT	C	1624	PASS	-	-	-	-	-	Del	-	D	69368499	69368524	22	760	2998.68	-	-	1	1	1	-	-	./.	0	0	0	0	23	22	23	22	0	0	./.	19	37	19	36	188	227	190	228	21	37	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791624301	11	69696504	G	GTC	540	PASS	-	-	-	-	-	Ins	-	I	69696504	69696509	2	30	472.716	-	-	2	1	1	-	-	./.	0	0	0	0	19	17	19	18	0	0	./.	5	4	9	6	93	81	94	81	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791624725	11	70235520	TG	T	900	PASS	AP000487.1	ENST00000500185	r.?	-	-	Del	intronic	D	70235520	70235522	1	72	806.926	-	-	1	1	1	AP000487.1|ENST00000500185|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AP000487.1|ENST00000500185|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	25	19	25	0	0	./.	7	8	10	11	75	79	75	79	10	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791627002	11	73484666	C	CT	269	PASS	-	-	-	-	-	Ins	-	I	73484666	73484676	1	6	258.74	-	-	9	1	1	-	-	./.	0	0	0	0	37	28	38	28	0	0	./.	5	0	8	0	108	96	112	99	8	0	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791628189	11	75004711	A	AG	360	PASS	ARRB1	CCDS44684.1	r.?	-	-	Ins	intronic	I	75004711	75004714	1	15	316.75	-	-	2	1	1	ARRB1|CCDS44684.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ARRB1|CCDS44684.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	14	24	14	24	0	0	./.	4	2	6	4	87	75	88	76	6	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791637704	11	97704772	TGG	T	420	PASS	-	-	-	-	-	Del	-	D	97704772	97704776	2	18	376.565	-	-	3	1	1	-	-	./.	0	0	0	0	38	11	38	11	0	0	./.	5	2	9	3	21	10	21	10	9	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791639509	11	101973855	AC	A	478	PASS	-	-	-	-	-	Del	-	D	101973855	101973857	1	28	475.727	-	-	1	1	1	-	-	./.	0	0	0	0	21	27	21	27	0	0	./.	3	6	4	8	21	23	21	23	4	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791642751	11	110318798	CAG	C	600	PASS	FDX1	CCDS8344.1	r.?	-	-	Del	intronic	D	110318798	110318801	2	36	537.951	-	-	1	1	1	FDX1|CCDS8344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FDX1|CCDS8344.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	34	25	34	25	0	0	./.	5	5	8	5	36	20	36	20	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791645039	11	116747786	GTC	G	480	PASS	SIK3	CCDS8379.1	r.?	-	-	Del	intronic	D	116747786	116747792	2	21	429.758	-	-	2	1	1	SIK3|CCDS8379.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SIK3|CCDS8379.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	18	27	18	0	0	./.	6	2	6	2	27	13	27	13	6	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791646504	11	119615841	GT	G	300	PASS	-	-	-	-	-	Del	-	D	119615841	119615843	1	12	268.975	-	-	1	1	1	-	-	./.	0	0	0	0	22	18	22	18	0	0	./.	3	2	8	6	17	17	17	17	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791647551	11	122538859	AT	A	480	PASS	UBASH3B	CCDS31694.1	r.?	-	-	Del	intronic	D	122538859	122538868	1	21	430.361	-	-	8	1	1	UBASH3B|CCDS31694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UBASH3B|CCDS31694.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	21	22	21	0	0	./.	6	2	12	6	26	25	26	25	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791648180	11	123824725	CATGA	C	321	PASS	-	-	-	-	-	Del	-	D	123824725	123824735	4	24	484.156	-	-	2	1	1	-	-	./.	0	0	0	0	21	24	21	24	0	0	./.	2	7	2	8	10	23	10	23	2	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791648557	11	124647053	CT	C	1380	PASS	C11orf61	CCDS8454.1	r.?	-	-	Del	intronic	D	124647053	124647055	1	156	1237.29	-	-	1	1	1	C11orf61|CCDS8454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C11orf61|CCDS8454.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	26	31	26	0	0	./.	11	12	16	14	35	29	35	29	16	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791652725	12	1042734	CA	C	989	PASS	RAD52	CCDS8507.2	r.?	-	-	Del	intronic	D	1042734	1042737	1	88	913.99	-	-	2	1	1	RAD52|CCDS8507.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	RAD52|CCDS8507.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	34	31	34	0	0	./.	7	10	11	12	37	41	37	41	11	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791653080	12	1552076	A	AT	300	PASS	ERC1	CCDS8508.1	r.?	-	-	Ins	intronic	I	1552076	1552086	1	10	265.987	-	-	9	1	1	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ERC1|CCDS8508.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	32	24	33	0	0	./.	4	1	6	1	51	48	54	48	6	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791653445	12	2343307	AGC	A	929	PASS	CACNA1C	CCDS44794.1	r.?	-	-	Del	intronic	D	2343307	2343310	2	81	855.976	-	-	1	1	1	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CACNA1C|CCDS44794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	24	26	24	0	0	./.	8	8	9	9	43	31	43	31	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791658136	12	11022136	CAAG	C	509	PASS	-	-	-	-	-	Del	-	D	11022136	11022147	3	28	484.196	-	-	3	1	1	-	-	./.	0	0	0	0	25	33	25	33	0	0	./.	3	6	6	10	40	39	40	39	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791659315	12	12925141	ACTG	A	538	PASS	APOLD1	CCDS44833.1	r.?	-	-	Del	intronic	D	12925141	12925145	3	20	537.995	-	-	1	1	1	APOLD1|CCDS44833.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	APOLD1|CCDS44833.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	30	22	30	0	0	./.	1	9	2	10	17	38	17	38	2	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791664488	12	23834395	GATTGAAT	G	522	PASS	SOX5	CCDS8699.1	r.?	-	-	Del	intronic	D	23834395	23834406	7	96	968.392	-	-	1	1	1	SOX5|CCDS8699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOX5|CCDS8699.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	22	19	22	0	0	./.	7	11	0	0	34	50	34	51	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791667520	12	30025952	AT	A	660	PASS	-	-	-	-	-	Del	-	D	30025952	30025959	1	40	591.795	-	-	6	1	1	-	-	./.	0	0	0	0	27	26	27	26	0	0	./.	4	7	7	9	33	37	33	37	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791667772	12	30649011	TACTC	T	747	PASS	-	-	-	-	-	Del	-	D	30649011	30649018	4	60	753.193	-	-	1	1	1	-	-	./.	0	0	0	0	27	29	27	29	0	0	./.	9	5	12	8	38	26	38	26	12	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791667925	12	30940005	T	TA	689	PASS	-	-	-	-	-	Ins	-	I	30940005	30940012	1	45	626.328	-	-	6	1	1	-	-	./.	0	0	0	0	26	38	28	38	0	0	./.	8	4	13	7	56	30	56	30	13	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791668104	12	31363133	TG	T	300	PASS	ENSG00000177359	ENST00000266524	r.?	-	-	Del	upstream	D	31363133	31363135	1	12	268.998	-	-	1	1	1	ENSG00000177359|ENST00000266524|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	ENSG00000177359|ENST00000266524|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	45	10	45	10	0	0	./.	3	2	6	3	42	18	42	18	6	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791669659	12	33475854	A	AAG	900	PASS	-	-	-	-	-	Ins	-	I	33475854	33475863	2	72	787.727	-	-	4	1	1	-	-	./.	0	0	0	0	17	36	17	36	0	0	./.	7	8	7	11	34	45	34	45	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791669843	12	33996196	GAC	G	300	PASS	-	-	-	-	-	Del	-	D	33996196	33996214	2	10	267.191	-	-	8	1	-	-	-	./.	0	0	0	0	26	35	26	35	0	0	./.	4	1	4	1	36	36	36	36	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791669878	12	34092025	TGAAA	T	567	PASS	-	-	-	-	-	Del	-	D	34092025	34092030	4	36	591.795	-	-	1	1	1	-	-	./.	0	0	0	0	27	17	27	17	0	0	./.	3	8	5	10	35	30	35	30	5	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791673638	12	45684812	CTCAATGAGGAA	C	261	PASS	ANO6	CCDS31782.1	r.?	-	-	Del	intronic	D	45684812	45684824	11	24	482.992	-	-	1	1	1	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANO6|CCDS31782.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	21	29	21	0	0	./.	2	7	3	8	35	28	36	28	4	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791674127	12	46841580	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	46841580	46841590	1	10	264.181	-	-	9	1	-	-	-	./.	0	0	0	0	26	30	27	30	0	0	./.	1	4	1	4	36	38	37	38	1	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791675802	12	50342342	TA	T	300	PASS	AQP2	CCDS8792.1	r.?	-	-	Del	upstream	D	50342342	50342352	1	12	268.998	-	-	9	1	1	AQP2|CCDS8792.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	AQP2|CCDS8792.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	24	26	24	26	0	0	./.	3	2	3	2	38	37	38	37	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791678640	12	55225713	AACATT	A	406	PASS	-	-	-	-	-	Del	-	D	55225713	55225722	5	64	752.591	-	-	1	1	1	-	-	./.	0	0	0	0	28	20	28	20	0	0	./.	7	7	7	8	41	38	41	39	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791678892	12	55955478	GA	G	548	PASS	-	-	-	-	-	Del	-	D	55955478	55955482	1	36	537.995	-	-	3	1	1	-	-	./.	0	0	0	0	38	24	38	24	0	0	./.	5	5	11	6	42	32	42	32	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791680132	12	57929243	AAC	A	360	PASS	DCTN2	CCDS44930.1	r.?	-	-	Del	intronic	D	57929243	57929261	2	16	322.797	-	-	8	1	1	DCTN2|CCDS44930.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DCTN2|CCDS44930.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	22	29	22	0	0	./.	3	3	3	3	35	40	35	40	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791681636	12	61652340	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	61652340	61652346	1	27	531.373	-	-	5	1	1	-	-	./.	0	0	0	0	35	41	35	41	0	0	./.	2	8	10	12	48	39	48	40	10	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791684609	12	68075360	AC	A	900	PASS	-	-	-	-	-	Del	-	D	68075360	68075362	1	70	805.187	-	-	1	1	1	-	-	./.	0	0	0	0	20	25	20	25	0	0	./.	6	9	7	9	28	34	28	34	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791685677	12	70120227	ACT	A	809	PASS	AC025263.1	ENST00000501387	r.?	-	-	Del	intronic	D	70120227	70120231	2	60	753.193	-	-	1	1	1	AC025263.1|ENST00000501387|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC025263.1|ENST00000501387|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	30	27	30	0	0	./.	9	5	14	8	52	37	52	37	14	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791685961	12	70727257	TTAG	T	1047	PASS	CNOT2	CCDS31857.1	r.?	-	-	Del	intronic	D	70727257	70727261	3	108	1019.18	-	-	1	1	1	CNOT2|CCDS31857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNOT2|CCDS31857.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	23	27	23	0	0	./.	11	8	13	11	40	42	40	42	13	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791686943	12	73072959	A	AC	300	PASS	-	-	-	-	-	Ins	-	I	73072959	73072960	1	12	265.987	-	-	0	1	1	-	-	./.	0	0	0	0	26	24	28	24	0	0	./.	2	3	3	3	34	30	35	32	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791688857	12	77441824	A	AT	540	PASS	E2F7	CCDS9016.1	r.?	-	-	Ins	intronic	I	77441824	77441825	1	30	478.777	-	-	0	1	1	E2F7|CCDS9016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	E2F7|CCDS9016.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	32	19	34	19	0	0	./.	5	4	7	8	25	30	26	30	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791689591	12	79357961	GA	G	720	PASS	SYT1	CCDS9017.1	r.?	-	-	Del	intronic	D	79357961	79357969	1	40	645.594	-	-	7	1	1	SYT1|CCDS9017.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SYT1|CCDS9017.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	33	21	33	0	0	./.	9	3	11	6	40	36	40	36	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791693656	12	89632930	TAG	T	809	PASS	-	-	-	-	-	Del	-	D	89632930	89632933	2	63	752.591	-	-	1	1	1	-	-	./.	0	0	0	0	16	24	16	24	0	0	./.	8	6	10	6	29	29	29	29	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791699671	12	101728587	TA	T	1109	PASS	UTP20	CCDS9081.1	r.?	-	-	Del	intronic	D	101728587	101728589	1	108	1020.99	-	-	1	1	1	UTP20|CCDS9081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UTP20|CCDS9081.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	22	28	22	0	0	./.	11	8	12	9	36	31	36	31	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791702988	12	109071958	CT	C	360	PASS	CORO1C	CCDS9120.1	r.?	-	-	Del	intronic	D	109071958	109071960	1	16	322.797	-	-	1	1	1	CORO1C|CCDS9120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CORO1C|CCDS9120.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	19	30	19	0	0	./.	3	3	5	3	33	22	33	22	5	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791703358	12	109664090	AAAAT	A	983	PASS	ACACB	CCDS31898.1	r.?	-	-	Del	intronic	D	109664090	109664098	4	84	914.592	-	-	1	1	1	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACACB|CCDS31898.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	26	26	26	0	0	./.	6	11	7	16	27	40	27	40	7	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791704050	12	110779237	T	TA	360	PASS	ATP2A2	CCDS9144.1	r.?	-	-	Ins	intronic	I	110779237	110779247	1	15	319.185	-	-	9	1	1	ATP2A2|CCDS9144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ATP2A2|CCDS9144.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	29	28	30	0	0	./.	2	4	5	11	36	54	36	54	5	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791705635	12	113679577	G	GTT	420	PASS	TPCN1	CCDS31908.1	r.?	-	-	Ins	intronic	I	113679577	113679579	2	20	363.953	-	-	1	1	-	TPCN1|CCDS31908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	TPCN1|CCDS31908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	24	19	24	0	0	./.	3	4	6	6	18	20	18	20	6	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791708664	12	119437134	CG	C	660	PASS	SRRM4	CCDS44994.1	r.?	-	-	Del	intronic	D	119437134	119437138	1	42	591.795	-	-	3	1	1	SRRM4|CCDS44994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SRRM4|CCDS44994.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	5	6	7	7	25	22	25	22	7	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791711781	12	123729930	TG	T	749	PASS	C12orf65	CCDS9244.1	r.?	-	-	Del	intronic	D	123729930	123729932	1	56	696.384	-	-	1	1	1	C12orf65|CCDS9244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	C12orf65|CCDS9244.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	17	22	17	0	0	./.	6	7	14	12	40	40	40	40	14	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791713908	12	127746447	AG	A	360	PASS	-	-	-	-	-	Del	-	D	127746447	127746449	1	12	322.797	-	-	1	1	1	-	-	./.	0	0	0	0	33	25	33	25	0	0	./.	5	1	5	5	28	26	28	26	5	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791714178	12	128229336	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	128229336	128229346	1	12	261.773	-	-	9	1	1	-	-	./.	0	0	0	0	30	25	30	25	0	0	./.	3	2	3	2	30	38	30	38	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791714403	12	128601920	C	CA	540	PASS	-	-	-	-	-	Ins	-	I	128601920	128601923	1	28	478.777	-	-	2	1	1	-	-	./.	0	0	0	0	24	26	24	27	0	0	./.	6	3	10	5	34	21	34	21	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791714894	12	129495764	AC	A	660	PASS	-	-	-	-	-	Del	-	D	129495764	129495770	1	40	588.785	-	-	5	1	1	-	-	./.	0	0	0	0	41	15	41	15	0	0	./.	4	7	8	9	36	24	36	24	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791716834	12	133557924	G	GT	326	PASS	-	-	-	-	-	Ins	-	I	133557924	133557930	1	15	319.185	-	-	5	1	1	-	-	./.	0	0	0	0	37	18	37	18	0	0	./.	4	2	6	5	37	23	38	23	6	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791719992	13	23731457	GCGTGAA	G	261	PASS	-	-	-	-	-	Del	-	D	23731457	23731465	6	24	485.287	-	-	1	1	1	-	-	./.	0	0	0	0	31	19	31	19	0	0	./.	2	7	4	7	26	31	26	31	4	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791720255	13	24187677	TTCTCC	T	718	PASS	TNFRSF19	CCDS9301.1	r.?	-	-	Del	intronic	D	24187677	24187685	5	56	700.971	-	-	1	1	1	TNFRSF19|CCDS9301.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TNFRSF19|CCDS9301.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	28	28	28	0	0	./.	6	7	6	9	34	36	34	36	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791721001	13	25473849	CA	C	809	PASS	CENPJ	CCDS9310.1	r.?	-	-	Del	intronic	D	25473849	25473851	1	60	753.687	-	-	1	1	1	CENPJ|CCDS9310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CENPJ|CCDS9310.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	21	24	21	0	0	./.	5	9	8	10	37	34	37	34	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791722443	13	28181058	A	AG	809	PASS	LNX2	CCDS9323.1	r.?	-	-	Ins	intronic	I	28181058	28181060	1	60	746.463	-	-	1	1	1	LNX2|CCDS9323.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	LNX2|CCDS9323.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	22	27	22	0	0	./.	5	9	9	13	34	41	34	41	9	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791722904	13	28938619	AC	A	660	PASS	FLT1	CCDS9330.1	r.?	-	-	Del	intronic	D	28938619	28938623	1	42	593.129	-	-	3	1	1	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FLT1|CCDS9330.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	34	28	34	0	0	./.	5	6	9	6	42	52	42	52	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791724500	13	32090580	AT	A	300	PASS	-	-	-	-	-	Del	-	D	32090580	32090590	1	10	269.604	-	-	9	1	1	-	-	./.	0	0	0	0	36	31	36	31	0	0	./.	4	1	4	1	44	37	44	37	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791724789	13	32665132	GGGCAGCAT	G	377	PASS	FRY	CCDS41875.1	r.?	-	-	Del	intronic	D	32665132	32665141	8	44	700.971	-	-	1	1	1	FRY|CCDS41875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FRY|CCDS41875.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	17	28	17	0	0	./.	10	3	12	6	38	31	38	31	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791727638	13	38797103	AT	A	660	PASS	-	-	-	-	-	Del	-	D	38797103	38797109	1	42	593.129	-	-	5	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	6	5	9	6	28	39	28	39	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791730098	13	43842710	T	TA	300	PASS	ENOX1	CCDS9389.1	r.?	-	-	Ins	intronic	I	43842710	43842720	1	10	256.359	-	-	9	1	1	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ENOX1|CCDS9389.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	34	25	34	26	0	0	./.	4	1	4	1	42	45	42	45	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791731285	13	46198509	CCA	C	660	PASS	-	-	-	-	-	Del	-	D	46198509	46198512	2	22	593.129	-	-	1	1	1	-	-	./.	0	0	0	0	31	15	31	15	0	0	./.	10	1	13	1	48	29	48	29	13	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791732173	13	48167434	CTT	C	660	PASS	-	-	-	-	-	Del	-	D	48167434	48167437	2	42	593.129	-	-	2	1	1	-	-	./.	0	0	0	0	18	30	18	30	0	0	./.	6	5	8	7	31	35	31	35	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791732174	13	48172154	C	CA	1020	PASS	-	-	-	-	-	Ins	-	I	48172154	48172156	1	78	906.419	-	-	1	1	1	-	-	./.	0	0	0	0	27	30	27	30	0	0	./.	5	12	11	19	41	46	41	46	11	19	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791734547	13	52980024	TG	T	780	PASS	THSD1	CCDS9433.1	r.?	-	-	Del	intronic	D	52980024	52980029	1	56	698.562	-	-	4	1	1	THSD1|CCDS9433.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	THSD1|CCDS9433.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	26	28	26	0	0	./.	6	7	9	11	43	32	43	32	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791734688	13	53275160	AAAATGAAAACATTTTCC	A	464	PASS	LECT1	CCDS45051.1	r.?	-	-	Del	downstream	D	53275160	53275179	17	81	862.733	-	-	1	1	1	LECT1|CCDS45051.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AL139089.1|ENST00000509401|r.?|-|-|non_protein_coding:deletion:2KB_upstream_variant|SO:0000011:SO:0000159:SO:0001636	./.	0	0	0	0	26	28	26	28	0	0	./.	8	8	6	8	33	39	35	39	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791736148	13	56786948	G	GA	780	PASS	-	-	-	-	-	Ins	-	I	56786948	56786955	1	54	692.542	-	-	6	1	1	-	-	./.	0	0	0	0	28	30	29	30	0	0	./.	5	8	5	9	29	43	30	44	5	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791739041	13	63506022	GA	G	600	PASS	-	-	-	-	-	Del	-	D	63506022	63506024	1	32	539.208	-	-	1	1	1	-	-	./.	0	0	0	0	27	25	27	25	0	0	./.	3	7	6	13	40	45	40	45	6	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791740031	13	65103366	ATTAT	A	836	PASS	-	-	-	-	-	Del	-	D	65103366	65103375	4	72	862.733	-	-	2	1	1	-	-	./.	0	0	0	0	29	34	29	34	0	0	./.	11	5	14	5	51	34	51	34	14	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791742327	13	70397053	G	GT	1020	PASS	KLHL1	CCDS9445.1	r.?	-	-	Ins	intronic	I	70397053	70397060	1	70	906.419	-	-	6	1	1	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KLHL1|CCDS9445.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	32	40	32	40	0	0	./.	4	13	10	15	45	57	45	57	10	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791748405	13	84065781	CA	C	600	PASS	-	-	-	-	-	Del	-	D	84065781	84065787	1	32	539.208	-	-	5	1	1	-	-	./.	0	0	0	0	20	47	20	47	0	0	./.	3	7	6	10	37	34	37	34	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791754408	13	97638762	GT	G	1140	PASS	OXGR1	CCDS9482.1	r.1495delA	c.?	p.?	Del	3'UTR variant	D	97638762	97638764	1	110	1022.69	-	-	1	1	1	OXGR1|CCDS9482.1|r.1495delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	OXGR1|CCDS9482.1|r.1495delA|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	22	22	22	22	0	0	./.	10	9	12	9	38	41	38	41	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791760100	13	109379197	GC	G	593	PASS	MYO16	CCDS32008.1	r.?	-	-	Del	intronic	D	109379197	109379199	1	35	539.208	-	-	1	1	1	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MYO16|CCDS32008.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	25	32	25	0	0	./.	6	4	9	5	40	20	40	20	9	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791764697	14	22982189	CCCAGG	C	869	PASS	TRAC	ENST00000446346	r.?	-	-	Del	intronic	D	22982189	22982196	5	60	809.424	-	-	1	1	1	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRAC|ENST00000446346|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	11	4	11	6	45	26	45	26	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791765885	14	25277368	CAGGAAG	C	290	PASS	STXBP6	CCDS9634.1	r.?	-	-	Del	downstream	D	25277368	25277375	6	35	539.616	-	-	1	1	1	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	STXBP6|CCDS9634.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	17	29	17	29	0	0	./.	6	4	8	6	30	29	30	29	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791767014	14	27933149	G	GT	780	PASS	-	-	-	-	-	Ins	-	I	27933149	27933157	1	54	693.674	-	-	7	1	1	-	-	./.	0	0	0	0	29	32	29	32	0	0	./.	5	8	11	10	44	42	45	44	11	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791769215	14	32650055	TC	T	1020	PASS	-	-	-	-	-	Del	-	D	32650055	32650058	1	88	916.143	-	-	2	1	1	-	-	./.	0	0	0	0	30	22	30	22	0	0	./.	7	10	11	13	43	50	43	50	11	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791770231	14	34848306	TCTGA	T	569	PASS	-	-	-	-	-	Del	-	D	34848306	34848311	4	35	535.401	-	-	1	1	1	-	-	./.	0	0	0	0	38	21	38	21	0	0	./.	4	6	7	9	33	28	33	28	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791770919	14	35613319	GGGT	G	749	PASS	KIAA0391	CCDS32063.1	r.?	-	-	Del	intronic	D	35613319	35613324	3	56	701.501	-	-	1	1	1	KIAA0391|CCDS32063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0391|CCDS32063.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	25	25	25	0	0	./.	6	7	7	8	35	34	35	34	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791773500	14	41105586	CA	C	780	PASS	-	-	-	-	-	Del	-	D	41105586	41105591	1	56	700.899	-	-	4	1	1	-	-	./.	0	0	0	0	18	33	18	33	0	0	./.	6	7	9	11	28	30	28	30	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791773926	14	41893242	TTAACCATTCTCTG	T	319	PASS	-	-	-	-	-	Del	-	D	41893242	41893258	13	36	593.577	-	-	1	1	1	-	-	./.	0	0	0	0	27	32	27	32	0	0	./.	8	3	8	4	35	25	36	25	9	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791774417	14	43019390	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	43019390	43019399	1	54	693.674	-	-	8	1	1	-	-	./.	0	0	0	0	32	41	32	41	0	0	./.	5	8	8	10	44	41	44	41	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791774600	14	43431148	TGAA	T	689	PASS	-	-	-	-	-	Del	-	D	43431148	43431153	3	33	647.539	-	-	1	1	1	-	-	./.	0	0	0	0	21	21	21	21	0	0	./.	10	2	10	3	48	29	48	29	10	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791774673	14	43595783	T	TC	569	PASS	-	-	-	-	-	Ins	-	I	43595783	43595785	1	36	532.993	-	-	1	1	1	-	-	./.	0	0	0	0	25	19	25	20	0	0	./.	5	5	13	8	43	44	43	45	13	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791776089	14	47011488	T	TA	600	PASS	-	-	-	-	-	Ins	-	I	47011488	47011497	1	32	533.595	-	-	8	1	1	-	-	./.	0	0	0	0	27	14	27	15	0	0	./.	3	7	8	8	36	35	37	35	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791776596	14	48152173	TAAA	T	869	PASS	-	-	-	-	-	Del	-	D	48152173	48152178	3	66	809.424	-	-	4	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	5	10	7	11	41	33	41	33	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791776625	14	48220622	AAG	A	300	PASS	-	-	-	-	-	Del	-	D	48220622	48220637	2	10	269.808	-	-	7	1	-	-	-	./.	0	0	0	0	21	32	21	32	0	0	./.	1	4	1	5	32	28	32	28	1	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791779196	14	53009173	TA	T	300	PASS	TXNDC16	CCDS32083.1	r.533-3delu	c.161-3delt	p.?	Del	splice region	D	53009173	53009178	1	10	269.808	-	-	4	1	1	TXNDC16|CCDS32083.1|r.533-3delu|c.161-3delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	TXNDC16|CCDS32083.1|r.533-3delu|c.161-3delt|p.?|protein_coding:CDS:extended_intronic_splice_region:deletion:extended_intronic_splice_region_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000159:SO:CGPX04:SO:0001576	./.	0	0	0	0	23	24	23	24	0	0	./.	1	4	4	6	41	35	41	35	4	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791789292	14	73402614	GTTGGTAATAATAATAATCT	G	348	PASS	DCAF4	CCDS9810.1	r.?	-	-	Del	intronic	D	73402614	73402636	19	45	647.539	-	-	1	1	1	DCAF4|CCDS9810.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	DCAF4|CCDS9810.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	19	25	19	0	0	./.	4	8	4	7	40	38	40	39	4	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791796037	14	86880043	GACTTTCTTTTC	G	406	PASS	-	-	-	-	-	Del	-	D	86880043	86880055	11	60	755.462	-	-	1	1	1	-	-	./.	0	0	0	0	17	22	17	22	0	0	./.	5	9	5	9	37	26	37	26	5	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791801732	14	98494501	GT	G	634	PASS	-	-	-	-	-	Del	-	D	98494501	98494505	1	54	701.501	-	-	3	1	1	-	-	./.	0	0	0	0	27	18	27	18	0	0	./.	5	8	8	8	34	33	34	33	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791801910	14	98901175	CA	C	300	PASS	-	-	-	-	-	Del	-	D	98901175	98901177	1	10	269.808	-	-	1	1	1	-	-	./.	0	0	0	0	23	26	23	26	0	0	./.	4	1	7	2	57	47	57	47	7	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791804329	14	103947766	AAACAAAATG	ATGT	512	PASS	MARK3	CCDS45165.1	r.?	-	-	Complex	intronic	DI	103947767	103947775	9	108	0	-	-	0	1	1	MARK3|CCDS45165.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	MARK3|CCDS45165.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	18	13	18	0	0	./.	8	11	0	0	35	30	36	30	8	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791805670	14	106849262	TA	T	480	PASS	-	-	-	-	-	Del	-	D	106849262	106849264	1	21	431.693	-	-	1	1	1	-	-	./.	0	0	0	0	20	15	20	15	0	0	./.	2	6	6	8	29	23	29	23	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791810777	15	29094071	GT	G	536	PASS	-	-	-	-	-	Del	-	D	29094071	29094081	1	42	590.495	-	-	9	1	-	-	-	./.	0	0	0	0	23	25	23	25	0	0	./.	5	6	7	9	29	33	29	33	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791811734	15	31336850	GGCAT	G	507	PASS	TRPM1	CCDS10024.2	r.?	-	-	Del	intronic	D	31336850	31336858	4	35	538.894	-	-	1	1	1	TRPM1|CCDS10024.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TRPM1|CCDS10024.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	12	25	12	0	0	./.	6	4	7	5	38	35	38	35	7	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791812660	15	33428775	AG	A	660	PASS	FMN1	ENST00000414268	r.?	-	-	Del	intronic	D	33428775	33428777	1	40	594.108	-	-	1	1	1	FMN1|ENST00000414268|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FMN1|ENST00000414268|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	27	20	27	0	0	./.	7	4	10	5	35	40	35	40	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791817470	15	42638049	AC	A	360	PASS	GANC	CCDS10084.1	r.?	-	-	Del	intronic	D	42638049	42638051	1	16	324.059	-	-	1	1	1	GANC|CCDS10084.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GANC|CCDS10084.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	24	24	24	0	0	./.	3	3	6	9	33	36	33	36	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791819380	15	45956502	T	TA	660	PASS	SQRDL	CCDS10127.1	r.?	-	-	Ins	intronic	I	45956502	45956505	1	42	587.485	-	-	2	1	1	SQRDL|CCDS10127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SQRDL|CCDS10127.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	31	26	31	0	0	./.	5	6	9	8	39	45	39	46	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791819476	15	46161174	TG	T	900	PASS	-	-	-	-	-	Del	-	D	46161174	46161176	1	70	810.147	-	-	1	1	1	-	-	./.	0	0	0	0	26	19	26	19	0	0	./.	6	9	9	12	36	41	36	41	9	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791820611	15	49062699	CA	C	780	PASS	CEP152	CCDS42033.1	r.?	-	-	Del	intronic	D	49062699	49062702	1	54	702.127	-	-	2	1	1	CEP152|CCDS42033.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CEP152|CCDS42033.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	29	30	29	0	0	./.	5	8	9	11	38	35	38	35	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791825636	15	59048841	CT	C	420	PASS	-	-	-	-	-	Del	-	D	59048841	59048848	1	20	378.069	-	-	6	1	1	-	-	./.	0	0	0	0	24	27	24	27	0	0	./.	3	4	6	8	40	47	40	47	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791830216	15	67007055	AT	A	989	PASS	SMAD6	CCDS10221.1	r.?	-	-	Del	intronic	D	67007055	67007058	1	84	916.962	-	-	2	1	1	SMAD6|CCDS10221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SMAD6|CCDS10221.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	11	6	15	8	39	33	39	33	15	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791838611	15	85247762	GA	G	840	PASS	SEC11B	CCDS45340.1	r.?	-	-	Del	intronic	D	85247762	85247766	1	55	756.137	-	-	3	1	1	SEC11B|CCDS45340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SEC11B|CCDS45340.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	25	32	25	0	0	./.	4	10	6	13	40	45	40	45	6	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791840884	15	90331581	GAAA	G	445	PASS	ANPEP	CCDS10356.1	r.?	-	-	Del	intronic	D	90331581	90331585	3	35	540.098	-	-	3	1	1	ANPEP|CCDS10356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANPEP|CCDS10356.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	35	20	35	0	0	./.	4	6	6	9	35	34	35	34	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791841994	15	92374908	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	92374908	92374918	1	10	267.039	-	-	9	1	1	-	-	./.	0	0	0	0	27	29	27	29	0	0	./.	1	4	2	4	39	42	40	44	2	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791842404	15	93320093	AAT	A	300	PASS	-	-	-	-	-	Del	-	D	93320093	93320112	2	10	270.049	-	-	9	1	1	-	-	./.	0	0	0	0	9	28	9	28	0	0	./.	1	4	2	5	37	34	37	34	2	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791843506	15	95433707	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	95433707	95433717	1	10	261.018	-	-	9	1	1	-	-	./.	0	0	0	0	26	22	27	22	0	0	./.	1	4	1	4	32	32	32	32	1	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791847554	16	1803300	CTATA	CAAT	758	PASS	MAPK8IP3	CCDS10442.2	r.?	-	-	Complex	intronic	DI	1803301	1803304	4	54	0	-	-	0	1	1	MAPK8IP3|CCDS10442.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	MAPK8IP3|CCDS10442.2|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	28	17	28	17	0	0	./.	8	5	0	0	35	17	35	17	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791857797	16	19660613	A	AT	600	PASS	C16orf62	CCDS32397.1	r.?	-	-	Ins	intronic	I	19660613	19660621	1	27	529.631	-	-	7	1	1	C16orf62|CCDS32397.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C16orf62|CCDS32397.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	27	30	27	0	0	./.	8	2	11	3	33	47	33	48	11	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791863344	16	29949352	TC	T	627	PASS	-	-	-	-	-	Del	-	D	29949352	29949354	1	40	647.84	-	-	1	1	1	-	-	./.	0	0	0	0	33	23	33	23	0	0	./.	9	3	14	9	41	31	41	31	14	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791868778	16	47340246	TA	T	900	PASS	ITFG1	CCDS10728.1	r.?	-	-	Del	intronic	D	47340246	47340251	1	66	804.381	-	-	4	1	1	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITFG1|CCDS10728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	13	26	13	0	0	./.	10	5	14	8	36	20	36	20	14	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791872013	16	55966471	TG	T	300	PASS	-	-	-	-	-	Del	-	D	55966471	55966481	1	6	269.933	-	-	9	1	1	-	-	./.	0	0	0	0	26	5	26	5	0	0	./.	5	0	9	0	22	16	22	16	9	0	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791875193	16	63646730	TA	T	900	PASS	-	-	-	-	-	Del	-	D	63646730	63646732	1	72	809.8	-	-	1	1	1	-	-	./.	0	0	0	0	34	21	34	21	0	0	./.	7	8	10	10	29	27	29	27	10	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791876391	16	67070577	GT	G	540	PASS	CBFB	CCDS45508.1	r.463delU	c.202delT	p.P70fs*19	Del	frameshift	D	67070577	67070584	1	24	485.88	-	-	6	1	1	CBFB|CCDS45508.1|r.463delU|c.202delT|p.P70fs*19|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CBFB|CCDS45508.1|r.463delU|c.202delT|p.P70fs*19|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	30	28	30	28	0	0	./.	2	7	4	9	12	18	12	18	4	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791882975	16	81223993	A	AT	1080	PASS	PKD1L2	CCDS42202.1	r.?	-	-	Ins	intronic	I	81223993	81224001	1	96	953.096	-	-	7	1	1	PKD1L2|CCDS42202.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PKD1L2|CCDS42202.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	11	7	15	12	33	40	33	40	15	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791886044	16	88671292	TGTCAG	T	689	PASS	ZC3H18	CCDS10967.1	r.?	-	-	Del	intronic	D	88671292	88671299	5	40	647.84	-	-	1	1	1	ZC3H18|CCDS10967.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZC3H18|CCDS10967.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	26	20	26	0	0	./.	9	3	10	6	27	15	27	15	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791891146	17	7577057	TC	T	780	PASS	TP53	CCDS11118.1	r.1070delG	c.880delG	p.E294fs*51	Del	frameshift	D	7577057	7577062	1	54	699.957	-	-	4	1	1	TP53|CCDS11118.1|r.1070delG|c.880delG|p.E294fs*51|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	TP53|CCDS11118.1|r.1070delG|c.880delG|p.E294fs*51|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	16	23	16	23	0	0	./.	5	8	6	12	17	26	17	26	6	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791893978	17	13431521	T	TC	600	PASS	HS3ST3A1	CCDS11165.1	r.?	-	-	Ins	intronic	I	13431521	13431525	1	35	531.991	-	-	3	1	1	HS3ST3A1|CCDS11165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	HS3ST3A1|CCDS11165.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	33	30	33	0	0	./.	4	6	4	6	18	20	18	20	4	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791905189	17	37031126	TG	T	629	PASS	LASP1	CCDS11331.1	r.?	-	-	Del	intronic	D	37031126	37031130	1	40	592.596	-	-	3	1	1	LASP1|CCDS11331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LASP1|CCDS11331.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	13	18	13	0	0	./.	7	4	11	6	39	23	39	23	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791905284	17	37153978	C	CT	300	PASS	-	-	-	-	-	Ins	-	I	37153978	37153988	1	10	266.899	-	-	9	1	1	-	-	./.	0	0	0	0	30	22	30	22	0	0	./.	4	1	7	4	36	30	36	30	7	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791905610	17	37566728	GATGCT	G	538	PASS	MED1	CCDS11336.1	r.1947_1951delAGCAU	c.1741_1745delAGCAT	p.S581fs*5	Del	frameshift	D	37566728	37566734	5	36	539.818	-	-	1	1	1	MED1|CCDS11336.1|r.1947_1951delAGCAU|c.1741_1745delAGCAT|p.S581fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	MED1|CCDS11336.1|r.1947_1951delAGCAU|c.1741_1745delAGCAT|p.S581fs*5|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	18	10	18	10	0	0	./.	5	5	5	5	29	21	29	21	5	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791909239	17	43179843	A	AC	420	PASS	NMT1	CCDS11494.1	r.?	-	-	Ins	intronic	I	43179843	43179847	1	18	364.025	-	-	3	1	1	NMT1|CCDS11494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NMT1|CCDS11494.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	5	2	7	8	21	30	21	30	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791910277	17	45006266	TC	T	780	PASS	GOSR2	CCDS42355.1	r.?	-	-	Del	intronic	D	45006266	45006268	1	54	701.764	-	-	1	1	1	GOSR2|CCDS42355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GOSR2|CCDS42355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	18	23	18	0	0	./.	8	5	13	8	37	27	37	27	13	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791911142	17	46210702	GT	G	540	PASS	SKAP1	CCDS32674.1	r.?	-	-	Del	downstream	D	46210702	46210707	1	28	478.01	-	-	4	1	1	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	SKAP1|CCDS32674.1|r.?|-|-|protein_coding:deletion:500B_downstream_variant|SO:0000010:SO:0000159:SO:0001634	./.	0	0	0	0	24	30	24	30	0	0	./.	3	6	7	9	45	33	45	33	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791912799	17	49014576	CT	C	920	PASS	-	-	-	-	-	Del	-	D	49014576	49014578	1	90	917.691	-	-	1	1	1	-	-	./.	0	0	0	0	18	24	18	24	0	0	./.	9	8	12	11	38	41	38	41	12	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791914543	17	52752314	TTA	T	780	PASS	-	-	-	-	-	Del	-	D	52752314	52752317	2	36	701.764	-	-	1	1	1	-	-	./.	0	0	0	0	28	20	28	20	0	0	./.	2	11	4	12	32	35	32	35	4	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791915247	17	54418150	CT	C	660	PASS	ANKFN1	CCDS32686.1	r.?	-	-	Del	intronic	D	54418150	54418158	1	40	593.8	-	-	7	1	1	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKFN1|CCDS32686.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	28	24	28	0	0	./.	7	4	10	7	34	34	34	34	10	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791923236	17	67877975	G	GA	900	PASS	-	-	-	-	-	Ins	-	I	67877975	67877984	1	60	798.89	-	-	8	1	1	-	-	./.	0	0	0	0	39	32	39	33	0	0	./.	4	11	5	14	33	54	35	54	5	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791924491	17	70554337	CT	C	480	PASS	-	-	-	-	-	Del	-	D	70554337	70554343	1	21	431.855	-	-	5	1	1	-	-	./.	0	0	0	0	28	36	28	36	0	0	./.	6	2	6	2	36	35	36	35	6	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791926277	17	73483959	TG	T	660	PASS	KIAA0195	CCDS32732.1	r.?	-	-	Del	intronic	D	73483959	73483966	1	42	593.8	-	-	6	1	1	KIAA0195|CCDS32732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIAA0195|CCDS32732.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	22	25	22	0	0	./.	5	6	7	9	31	22	31	22	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791926422	17	73725285	GC	G	720	PASS	ITGB4	CCDS11727.1	r.?	-	-	Del	intronic	D	73725285	73725287	1	33	647.782	-	-	1	1	1	ITGB4|CCDS11727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGB4|CCDS11727.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	15	28	15	0	0	./.	10	2	16	2	45	21	45	21	16	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791930932	18	142719	CA	C	720	PASS	-	-	-	-	-	Del	-	D	142719	142722	1	48	647.983	-	-	2	1	1	-	-	./.	0	0	0	0	34	19	34	19	0	0	./.	7	5	11	7	32	29	32	29	11	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791932126	18	2404832	AG	A	840	PASS	-	-	-	-	-	Del	-	D	2404832	2404834	1	64	754.174	-	-	1	1	1	-	-	./.	0	0	0	0	22	26	22	26	0	0	./.	7	7	9	10	41	28	41	28	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791933084	18	3754082	CCTTAACTTCTCAGGCT	C	464	PASS	DLGAP1	CCDS11836.1	r.?	-	-	Del	intronic	D	3754082	3754100	16	80	862.773	-	-	1	1	1	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DLGAP1|CCDS11836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	31	28	31	0	0	./.	9	7	8	8	34	37	35	37	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791933654	18	5031561	A	AT	629	PASS	-	-	-	-	-	Ins	-	I	5031561	5031567	1	42	587.362	-	-	5	1	1	-	-	./.	0	0	0	0	20	28	20	29	0	0	./.	5	6	6	11	43	35	44	35	6	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791934956	18	8184634	A	AT	1200	PASS	PTPRM	CCDS11840.1	r.?	-	-	Ins	intronic	I	8184634	8184638	1	120	1067.93	-	-	3	1	1	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PTPRM|CCDS11840.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	25	26	26	27	0	0	./.	11	9	12	11	42	51	42	51	12	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791936868	18	11862509	ATTTAATGATTATT	A	435	PASS	GNAL	CCDS11851.1	r.?	-	-	Del	intronic	D	11862509	11862524	13	72	808.774	-	-	1	1	1	GNAL|CCDS11851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GNAL|CCDS11851.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	23	30	23	0	0	./.	7	8	8	8	39	37	39	37	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791947393	18	37545912	TG	T	540	PASS	-	-	-	-	-	Del	-	D	37545912	37545914	1	30	485.987	-	-	1	1	1	-	-	./.	0	0	0	0	24	19	24	19	0	0	./.	4	5	7	6	32	40	32	40	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791953111	18	51108865	TAAGGAAGTTTTTTTA	T	290	PASS	-	-	-	-	-	Del	-	D	51108865	51108883	15	35	539.384	-	-	1	1	1	-	-	./.	0	0	0	0	30	24	30	24	0	0	./.	4	6	4	6	31	38	31	38	4	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791954339	18	53873996	CT	C	929	PASS	-	-	-	-	-	Del	-	D	53873996	53874000	1	77	863.977	-	-	3	1	1	-	-	./.	0	0	0	0	28	28	28	28	0	0	./.	10	6	14	10	38	38	38	38	14	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791958754	18	63189543	AC	A	480	PASS	-	-	-	-	-	Del	-	D	63189543	63189546	1	21	431.387	-	-	2	1	1	-	-	./.	0	0	0	0	15	27	15	27	0	0	./.	6	2	7	6	24	35	24	35	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791960865	18	67373765	TTTA	T	382	PASS	DOK6	CCDS32841.1	r.?	-	-	Del	intronic	D	67373765	67373779	3	16	428.376	-	-	4	1	1	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DOK6|CCDS32841.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	27	19	27	0	0	./.	1	7	2	10	12	43	12	43	2	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791963172	18	72263668	A	AT	660	PASS	ENSG00000206029	ENST00000382649	r.1392_1393insa	c.?	p.?	Ins	3'UTR variant	I	72263668	72263676	1	42	583.749	-	-	7	1	1	ENSG00000206029|ENST00000382649|r.1392_1393insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ENSG00000206029|ENST00000382649|r.1392_1393insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	29	30	29	30	0	0	./.	5	6	8	8	42	38	42	38	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791969497	19	6309271	TG	T	780	PASS	ACER1	CCDS12161.1	r.?	-	-	Del	intronic	D	6309271	6309273	1	56	702.237	-	-	1	1	1	ACER1|CCDS12161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ACER1|CCDS12161.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	35	19	35	19	0	0	./.	7	6	9	6	38	25	38	25	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791972701	19	10529305	TC	T	509	PASS	PDE4A	CCDS45961.1	r.?	-	-	Del	upstream	D	10529305	10529308	1	30	486.164	-	-	2	1	1	PDE4A|CCDS45961.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	PDE4A|ENST00000380702|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	27	27	27	0	0	./.	4	5	8	9	27	33	27	33	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791983916	19	30163332	TGAGCTGGG	T	261	PASS	PLEKHF1	CCDS12417.1	r.?	-	-	Del	intronic	D	30163332	30163342	8	28	483.154	-	-	1	1	1	PLEKHF1|CCDS12417.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLEKHF1|CCDS12417.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	34	19	34	0	0	./.	3	6	3	6	31	30	31	30	3	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791985211	19	33016914	AG	A	960	PASS	-	-	-	-	-	Del	-	D	33016914	33016916	1	77	863.69	-	-	1	1	1	-	-	./.	0	0	0	0	37	29	37	29	0	0	./.	10	6	12	9	31	50	31	50	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791985340	19	33197233	AGAG	A	656	PASS	NUDT19	CCDS42543.1	r.?	-	-	Del	intronic	D	33197233	33197237	3	50	702.237	-	-	1	1	1	NUDT19|CCDS42543.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NUDT19|CCDS42543.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	21	25	21	0	0	./.	4	9	5	10	20	33	20	33	5	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791991796	19	43549304	GGA	G	295	PASS	PSG1	ENST00000449000	r.?	-	-	Del	intronic	D	43549304	43549323	2	12	268.887	-	-	9	1	1	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PSG1|ENST00000449000|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	16	14	16	0	0	./.	2	3	2	3	24	23	24	23	2	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791995675	19	49077253	GACT	G	627	PASS	SULT2B1	CCDS12724.1	r.?	-	-	Del	upstream	D	49077253	49077259	3	48	634.974	-	-	1	1	1	SULT2B1|CCDS12724.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	SULT2B1|CCDS12723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	27	26	27	0	0	./.	5	7	7	10	27	43	27	43	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2791995977	19	49461236	CA	C	593	PASS	BAX	CCDS12744.1	r.?	-	-	Del	intronic	D	49461236	49461241	1	42	590.588	-	-	4	1	1	BAX|CCDS12744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BAX|CCDS12744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	22	26	22	0	0	./.	6	5	10	5	27	28	27	28	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792000577	19	56189348	ACAGAATCAG	A	406	PASS	U2AF2	CCDS12933.1	r.?	-	-	Del	downstream	D	56189348	56189358	9	55	756.255	-	-	1	1	1	U2AF2|CCDS12933.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EPN1|CCDS46198.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	4	10	5	10	24	38	24	38	5	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792003149	2	1980115	T	TA	1020	PASS	MYT1L	CCDS46222.1	r.?	-	-	Ins	intronic	I	1980115	1980123	1	88	899.503	-	-	7	1	1	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MYT1L|CCDS46222.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	29	21	29	0	0	./.	10	7	13	10	46	45	46	45	13	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792006160	2	9781438	GT	G	600	PASS	-	-	-	-	-	Del	-	D	9781438	9781448	1	32	535.494	-	-	9	1	1	-	-	./.	0	0	0	0	26	29	26	29	0	0	./.	7	3	11	6	30	26	30	26	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792007548	2	12910950	GTGCAT	G	358	PASS	-	-	-	-	-	Del	-	D	12910950	12910959	5	14	374.846	-	-	1	1	1	-	-	./.	0	0	0	0	38	32	38	32	0	0	./.	6	1	10	1	27	11	27	11	10	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792008645	2	15538139	GTGGG	GT	743	PASS	NBAS	CCDS1685.1	r.?	-	-	Complex	intronic	DI	15538140	15538143	4	56	0	-	-	0	1	1	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	NBAS|CCDS1685.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	29	21	29	21	0	0	./.	6	7	0	0	29	37	29	37	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792010924	2	21444098	GTC	G	600	PASS	-	-	-	-	-	Del	-	D	21444098	21444102	2	20	535.494	-	-	1	1	1	-	-	./.	0	0	0	0	17	30	17	30	0	0	./.	1	9	2	11	11	32	11	32	2	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792010966	2	21559021	GGGGTC	GGC	544	PASS	-	-	-	-	-	Complex	-	DI	21559022	21559026	5	40	0	-	-	0	1	1	-	-	./.	0	0	0	0	21	23	21	23	0	0	./.	4	7	0	0	22	28	22	28	4	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792012776	2	25507187	TC	T	749	PASS	DNMT3A	CCDS33157.1	r.?	-	-	Del	intronic	D	25507187	25507189	1	56	693.132	-	-	1	1	1	DNMT3A|CCDS33157.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DNMT3A|CCDS33157.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	30	29	30	0	0	./.	7	6	9	6	41	39	41	39	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792012821	2	25602865	AG	A	569	PASS	DTNB	CCDS46237.1	r.?	-	-	Del	intronic	D	25602865	25602868	1	35	531.882	-	-	2	1	1	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DTNB|CCDS46237.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	22	21	22	0	0	./.	6	4	8	5	34	23	34	23	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792018785	2	38100604	ATCTCC	A	296	PASS	-	-	-	-	-	Del	-	D	38100604	38100610	5	20	374.244	-	-	1	1	1	-	-	./.	0	0	0	0	23	21	23	21	0	0	./.	3	4	8	5	29	17	29	17	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792018836	2	38208924	AAG	A	1140	PASS	FAM82A1	CCDS1792.1	r.?	-	-	Del	intronic	D	38208924	38208930	2	110	1017.44	-	-	2	1	1	FAM82A1|CCDS1792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM82A1|CCDS1792.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	16	24	16	0	0	./.	9	10	9	11	36	52	36	52	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792022506	2	45367536	TC	T	718	PASS	-	-	-	-	-	Del	-	D	45367536	45367540	1	56	696.143	-	-	3	1	1	-	-	./.	0	0	0	0	15	17	15	17	0	0	./.	6	7	6	8	26	25	26	25	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792027941	2	56532881	TA	T	780	PASS	CCDC85A	CCDS46290.1	r.?	-	-	Del	intronic	D	56532881	56532886	1	56	694.337	-	-	4	1	1	CCDC85A|CCDS46290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CCDC85A|CCDS46290.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	27	27	27	0	0	./.	6	7	7	8	31	35	31	35	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792028948	2	59633038	ACTCCTCCAGAAAG	A	348	PASS	-	-	-	-	-	Del	-	D	59633038	59633057	13	48	642.593	-	-	1	1	1	-	-	./.	0	0	0	0	36	36	36	36	0	0	./.	7	5	6	5	30	26	31	26	7	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792032399	2	66337539	G	GTT	1260	PASS	-	-	-	-	-	Ins	-	I	66337539	66337544	2	132	1098.05	-	-	4	1	1	-	-	./.	0	0	0	0	39	25	39	25	0	0	./.	10	11	14	16	41	49	41	50	14	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792032616	2	66807080	AAG	A	329	PASS	-	-	-	-	-	Del	-	D	66807080	66807098	2	15	321.297	-	-	8	1	-	-	-	./.	0	0	0	0	22	22	22	22	0	0	./.	2	4	3	5	43	38	43	38	3	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792037399	2	77388443	T	TTTCTG	449	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Ins	intronic	I	77388443	77388448	5	21	404.313	-	-	0	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	31	26	31	0	0	./.	2	6	2	10	24	35	24	36	2	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792037435	2	77554621	ATTT	A	507	PASS	LRRTM4	CCDS46346.1	r.?	-	-	Del	intronic	D	77554621	77554629	3	36	535.494	-	-	7	1	1	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRRTM4|CCDS46346.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	26	26	26	0	0	./.	5	5	8	11	37	43	37	43	8	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792038018	2	78979835	CGCAAGGACAA	C	262	PASS	-	-	-	-	-	Del	-	D	78979835	78979846	10	48	642.593	-	-	1	1	1	-	-	./.	0	0	0	0	11	25	11	25	0	0	./.	5	7	6	9	22	39	22	39	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792039559	2	83244510	TCCTTTTA	T	377	PASS	-	-	-	-	-	Del	-	D	83244510	83244519	7	44	695.541	-	-	1	1	1	-	-	./.	0	0	0	0	38	19	38	19	0	0	./.	3	10	5	11	34	40	34	40	5	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792040175	2	84584458	CA	C	937	PASS	-	-	-	-	-	Del	-	D	84584458	84584466	1	80	855.587	-	-	7	1	1	-	-	./.	0	0	0	0	41	32	41	32	0	0	./.	9	7	10	9	36	33	36	33	10	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792045184	2	97205643	ACTTGAGGTCTCCCTG	A	522	PASS	ARID5A	CCDS33251.1	r.?	-	-	Del	intronic	D	97205643	97205661	15	91	963.89	-	-	1	1	1	ARID5A|CCDS33251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARID5A|CCDS33251.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	25	31	25	0	0	./.	12	6	11	6	30	28	31	28	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792046273	2	99896414	TC	T	569	PASS	LYG1	CCDS2043.1	r.?	-	-	Del	downstream	D	99896414	99896416	1	35	535.494	-	-	1	1	1	LYG1|CCDS2043.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	LYG1|CCDS2043.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	22	25	22	25	0	0	./.	6	4	9	8	41	28	41	28	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792048023	2	103225253	CT	C	720	PASS	-	-	-	-	-	Del	-	D	103225253	103225255	1	48	642.593	-	-	1	1	1	-	-	./.	0	0	0	0	30	24	30	24	0	0	./.	7	5	11	8	39	38	39	38	11	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792048675	2	105045518	TTATTA	T	927	PASS	-	-	-	-	-	Del	-	D	105045518	105045527	5	78	910.341	-	-	1	1	1	-	-	./.	0	0	0	0	31	28	31	28	0	0	./.	5	12	8	15	35	44	35	44	8	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792052391	2	113755889	AGTT	A	809	PASS	-	-	-	-	-	Del	-	D	113755889	113755894	3	55	749.692	-	-	1	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	4	10	4	11	26	38	26	38	4	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792054700	2	119242379	C	CA	780	PASS	-	-	-	-	-	Ins	-	I	119242379	119242387	1	44	687.112	-	-	7	1	1	-	-	./.	0	0	0	0	22	27	22	27	0	0	./.	3	10	6	10	29	42	29	42	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792054963	2	120051533	TG	T	1080	PASS	-	-	-	-	-	Del	-	D	120051533	120051538	1	99	963.288	-	-	4	1	1	-	-	./.	0	0	0	0	26	16	26	16	0	0	./.	8	10	9	10	31	23	31	23	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792055630	2	121524557	AG	A	600	PASS	GLI2	ENST00000418323	r.?	-	-	Del	intronic	D	121524557	121524560	1	35	535.494	-	-	2	1	1	GLI2|ENST00000418323|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GLI2|ENST00000418323|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	23	19	23	0	0	./.	4	6	6	6	19	28	19	28	6	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792055766	2	121868653	AC	A	689	PASS	-	-	-	-	-	Del	-	D	121868653	121868655	1	48	642.593	-	-	1	1	1	-	-	./.	0	0	0	0	33	20	33	20	0	0	./.	5	7	11	9	44	40	44	40	11	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792056256	2	122885624	A	AT	780	PASS	-	-	-	-	-	Ins	-	I	122885624	122885634	1	54	687.714	-	-	9	1	1	-	-	./.	0	0	0	0	22	28	23	28	0	0	./.	8	5	10	10	48	40	49	40	10	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792062416	2	135500117	TG	T	840	PASS	-	-	-	-	-	Del	-	D	135500117	135500120	1	63	749.692	-	-	2	1	1	-	-	./.	0	0	0	0	31	18	31	18	0	0	./.	8	6	13	8	40	28	40	28	13	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792062441	2	135552824	G	GT	660	PASS	-	-	-	-	-	Ins	-	I	135552824	135552828	1	42	582.421	-	-	3	1	1	-	-	./.	0	0	0	0	11	23	12	23	0	0	./.	6	5	12	6	39	27	39	28	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792063399	2	137348368	C	CA	360	PASS	-	-	-	-	-	Ins	-	I	137348368	137348376	1	16	317.684	-	-	7	1	1	-	-	./.	0	0	0	0	27	33	28	33	0	0	./.	3	3	5	5	42	28	42	28	5	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792065120	2	141345446	AT	A	900	PASS	LRP1B	CCDS2182.1	r.?	-	-	Del	intronic	D	141345446	141345451	1	66	802.037	-	-	4	1	1	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LRP1B|CCDS2182.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	25	26	25	0	0	./.	10	5	14	8	40	40	40	40	14	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792067359	2	146682879	TA	T	1200	PASS	-	-	-	-	-	Del	-	D	146682879	146682883	1	105	1070.99	-	-	3	1	1	-	-	./.	0	0	0	0	36	23	36	23	0	0	./.	14	6	16	7	45	38	45	38	16	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792068617	2	150149906	CTCAATGAGGACTTCAAAGTTTTCCCAAACAAAACTTGGTAAGAACCTGATTTACTTATGTGAGAGCAAAGGTCCTCTTCTAATAGTTCTCCCAAA	C	348	PASS	-	-	-	-	-	Del	-	D	150149906	150150003	95	49	642.593	-	-	1	1	1	-	-	./.	0	0	0	0	24	29	24	29	0	0	./.	6	6	0	0	24	33	30	39	6	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792070645	2	154896934	TTA	T	1320	PASS	GALNT13	CCDS2199.1	r.?	-	-	Del	intronic	D	154896934	154896937	2	140	1178.09	-	-	1	1	1	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNT13|CCDS2199.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	20	31	20	0	0	./.	13	9	17	10	44	36	44	36	17	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792075759	2	167596997	GCT	G	300	PASS	-	-	-	-	-	Del	-	D	167596997	167597014	2	12	267.747	-	-	8	1	1	-	-	./.	0	0	0	0	28	24	28	24	0	0	./.	2	3	2	4	34	45	34	45	2	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792076385	2	169100782	GT	G	1260	PASS	STK39	CCDS42770.1	r.?	-	-	Del	intronic	D	169100782	169100784	1	130	1122.13	-	-	1	1	1	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	STK39|CCDS42770.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	15	25	15	0	0	./.	12	9	16	11	52	30	52	30	16	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792078754	2	173044017	ACTC	A	658	PASS	-	-	-	-	-	Del	-	D	173044017	173044024	3	48	642.593	-	-	2	1	1	-	-	./.	0	0	0	0	20	26	20	26	0	0	./.	7	5	13	7	34	33	34	33	13	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792080098	2	175695867	TA	T	720	PASS	CHN1	CCDS46455.1	r.?	-	-	Del	intronic	D	175695867	175695873	1	40	642.593	-	-	5	1	1	CHN1|CCDS46455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CHN1|CCDS46455.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	35	34	35	34	0	0	./.	9	3	11	6	31	28	31	28	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792081649	2	179237983	TA	T	420	PASS	OSBPL6	CCDS2277.1	r.?	-	-	Del	intronic	D	179237983	179237986	1	20	374.846	-	-	2	1	1	OSBPL6|CCDS2277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OSBPL6|CCDS2277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	24	18	24	0	0	./.	3	4	6	7	45	32	45	32	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792083246	2	183312668	C	CT	929	PASS	PDE1A	CCDS2285.1	r.?	-	-	Ins	intronic	I	183312668	183312674	1	80	845.352	-	-	5	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	25	28	25	0	0	./.	7	9	8	9	36	36	36	36	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792083268	2	183355638	ACATAGTAGGGAAGGGCTCT	A	435	PASS	PDE1A	CCDS2285.1	r.?	-	-	Del	intronic	D	183355638	183355658	19	70	801.435	-	-	1	1	1	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PDE1A|CCDS2285.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	27	31	27	0	0	./.	6	9	6	7	29	27	29	29	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792084545	2	186576545	AC	A	900	PASS	-	-	-	-	-	Del	-	D	186576545	186576548	1	72	803.242	-	-	2	1	1	-	-	./.	0	0	0	0	28	26	28	26	0	0	./.	7	8	9	9	50	34	50	34	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792086800	2	191766652	TC	T	720	PASS	GLS	CCDS2308.1	r.?	-	-	Del	intronic	D	191766652	191766654	1	48	642.593	-	-	1	1	1	GLS|CCDS2308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GLS|CCDS2308.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	20	29	20	0	0	./.	7	5	7	8	42	31	42	31	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792087458	2	193317030	GT	G	840	PASS	-	-	-	-	-	Del	-	D	193317030	193317034	1	63	748.488	-	-	3	1	1	-	-	./.	0	0	0	0	31	23	31	23	0	0	./.	6	8	8	8	34	29	34	29	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792093755	2	206454805	ATACCAACACATGAATG	A	406	PASS	PARD3B	CCDS42806.1	r.?	-	-	Del	intronic	D	206454805	206454825	16	63	749.692	-	-	1	1	1	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARD3B|CCDS42806.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	33	23	33	0	0	./.	6	8	6	8	27	42	27	43	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792093868	2	206728029	TAC	T	600	PASS	-	-	-	-	-	Del	-	D	206728029	206728035	2	27	535.494	-	-	2	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	2	8	5	8	30	35	30	35	5	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792096083	2	211267258	TCTG	T	1167	PASS	-	-	-	-	-	Del	-	D	211267258	211267263	3	130	1124.54	-	-	1	1	1	-	-	./.	0	0	0	0	25	20	25	20	0	0	./.	9	12	12	13	44	49	44	49	12	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792098046	2	215844860	CTCCATCAGTAACCT	C	406	PASS	ABCA12	CCDS33372.1	r.?	-	-	Del	intronic	D	215844860	215844876	14	55	749.692	-	-	1	1	1	ABCA12|CCDS33372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ABCA12|CCDS33372.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	16	29	16	0	0	./.	10	4	10	6	34	29	34	29	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792102509	2	225367454	TA	T	1020	PASS	CUL3	CCDS2462.1	r.?	-	-	Del	intronic	D	225367454	225367456	1	88	907.33	-	-	1	1	1	CUL3|CCDS2462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CUL3|CCDS2462.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	42	19	42	0	0	./.	7	10	9	14	35	50	35	50	9	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792102698	2	225629263	AGT	A	300	PASS	DOCK10	CCDS46528.1	r.?	-	-	Del	downstream	D	225629263	225629280	2	10	267.747	-	-	8	1	1	DOCK10|CCDS46528.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	DOCK10|CCDS46528.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	21	17	21	17	0	0	./.	4	1	4	1	48	29	48	29	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792105481	2	231395140	TAACTC	T	676	PASS	SP100	CCDS42832.1	r.?	-	-	Del	intronic	D	231395140	231395149	5	50	696.143	-	-	1	1	1	SP100|CCDS42832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SP100|CCDS42832.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	29	21	29	0	0	./.	9	4	12	6	47	38	47	38	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792106424	2	232996131	AG	A	1020	PASS	DIS3L2	CCDS42834.1	r.?	-	-	Del	intronic	D	232996131	232996133	1	88	908.534	-	-	1	1	1	DIS3L2|CCDS42834.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DIS3L2|ENST00000409401|r.1580delG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	20	30	20	30	0	0	./.	7	10	7	11	34	41	34	41	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792109811	2	240618817	AG	A	569	PASS	-	-	-	-	-	Del	-	D	240618817	240618820	1	27	535.494	-	-	2	1	1	-	-	./.	0	0	0	0	21	17	21	17	0	0	./.	8	2	14	6	34	24	34	24	14	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792117351	20	13581534	AGGAACC	A	261	PASS	TASP1	CCDS13116.1	r.?	-	-	Del	intronic	D	13581534	13581541	6	30	487.123	-	-	1	1	1	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TASP1|CCDS13116.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	32	26	32	0	0	./.	5	4	6	7	28	41	28	41	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792117464	20	13752643	ACTA	AG	778	PASS	ESF1	CCDS13117.1	r.?	-	-	Complex	intronic	DI	13752644	13752646	3	60	0	-	-	0	1	1	ESF1|CCDS13117.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ESF1|CCDS13117.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	22	24	22	24	0	0	./.	5	9	0	0	34	31	34	32	5	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792120947	20	21549789	ATT	A	480	PASS	-	-	-	-	-	Del	-	D	21549789	21549792	2	24	432.999	-	-	2	1	-	-	-	./.	0	0	0	0	27	25	27	25	0	0	./.	5	3	11	5	32	32	32	32	11	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792121419	20	23175535	TA	T	1589	PASS	-	-	-	-	-	Del	-	D	23175535	23175537	1	190	1461.37	-	-	1	1	1	-	-	./.	0	0	0	0	29	24	29	24	0	0	./.	18	9	18	10	42	28	42	28	18	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792122875	20	25977317	GCA	G	329	PASS	-	-	-	-	-	Del	-	D	25977317	25977335	2	15	324.749	-	-	8	1	1	-	-	./.	0	0	0	0	30	25	30	25	0	0	./.	2	4	2	4	34	30	34	30	2	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792127386	20	33902190	GA	G	660	PASS	UQCC	CCDS13252.1	r.?	-	-	Del	intronic	D	33902190	33902192	1	30	595.373	-	-	1	1	1	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	UQCC|CCDS13252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	15	21	15	0	0	./.	9	2	13	2	42	17	42	17	13	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792128050	20	34776932	TTTTAAG	T	406	PASS	EPB41L1	CCDS13271.1	r.?	-	-	Del	intronic	D	34776932	34776939	6	60	757.748	-	-	1	1	1	EPB41L1|CCDS13271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPB41L1|CCDS13271.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	18	20	18	0	0	./.	5	9	5	12	35	36	35	36	5	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792129165	20	37027086	G	GGA	1136	PASS	-	-	-	-	-	Ins	-	I	37027086	37027091	2	90	1109.53	-	-	2	1	1	-	-	./.	0	0	0	0	23	29	23	29	0	0	./.	4	17	5	17	33	52	34	52	5	17	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792132150	20	44404221	TTGGAC	T	627	PASS	WFDC3	CCDS33478.1	r.593_597delGUCCA	c.509_513delGTCCA	p.C170fs*1	Del	frameshift	D	44404221	44404227	5	45	647.692	-	-	1	1	1	WFDC3|CCDS33478.1|r.593_597delGUCCA|c.509_513delGTCCA|p.C170fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	WFDC3|CCDS33478.1|r.593_597delGUCCA|c.509_513delGTCCA|p.C170fs*1|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	23	12	23	12	0	0	./.	8	4	10	8	38	35	38	35	10	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792133235	20	46389910	ATCTCC	A	613	PASS	SULF2	CCDS13408.1	r.?	-	-	Del	intronic	D	46389910	46389917	5	108	1027.17	-	-	1	1	1	SULF2|CCDS13408.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SULF2|CCDS13408.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	25	19	25	0	0	./.	11	8	12	8	39	32	39	32	12	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792134926	20	49570041	G	GT	300	PASS	DPM1	CCDS13434.1	r.?	-	-	Ins	intronic	I	49570041	49570051	1	6	265.808	-	-	9	1	1	DPM1|CCDS13434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	DPM1|CCDS13434.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	36	20	36	20	0	0	./.	0	5	0	5	49	52	50	52	0	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792135689	20	50849769	AT	A	540	PASS	-	-	-	-	-	Del	-	D	50849769	50849776	1	30	487.123	-	-	6	1	1	-	-	./.	0	0	0	0	26	26	26	26	0	0	./.	5	4	9	8	33	33	33	33	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792136866	20	52963661	CATCATGTAA	C	290	PASS	-	-	-	-	-	Del	-	D	52963661	52963671	9	35	540.646	-	-	1	1	1	-	-	./.	0	0	0	0	31	18	31	18	0	0	./.	4	6	6	7	33	37	33	37	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792140163	20	60680591	CAAG	C	447	PASS	-	-	-	-	-	Del	-	D	60680591	60680598	3	24	486.521	-	-	2	1	1	-	-	./.	0	0	0	0	23	16	23	16	0	0	./.	2	7	2	7	22	34	22	34	2	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792140377	20	61299715	T	TG	540	PASS	SLCO4A1	CCDS13501.1	r.?	-	-	Ins	intronic	I	61299715	61299725	1	30	477.491	-	-	9	1	1	SLCO4A1|CCDS13501.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SLCO4A1|CCDS13501.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	18	15	19	15	0	0	./.	5	4	6	7	27	26	27	26	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792146517	21	15697007	A	AG	476	PASS	-	-	-	-	-	Ins	-	I	15697007	15697008	1	35	534.291	-	-	0	1	1	-	-	./.	0	0	0	0	21	28	21	28	0	0	./.	4	6	9	9	25	43	25	43	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792147023	21	16999319	A	ATTGAAAGTAGCAAATTTC	261	PASS	-	-	-	-	-	Ins	-	I	16999319	16999340	18	28	388.024	-	-	1	1	1	-	-	./.	0	0	0	0	49	31	49	31	0	0	./.	6	3	2	2	46	48	53	50	6	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792150136	21	23003999	CA	C	720	PASS	-	-	-	-	-	Del	-	D	23003999	23004007	1	49	645.605	-	-	7	1	1	-	-	./.	0	0	0	0	21	22	21	22	0	0	./.	6	6	9	9	36	33	36	33	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792150343	21	23527692	TTTGGGGTAC	T	493	PASS	-	-	-	-	-	Del	-	D	23527692	23527703	9	78	920.577	-	-	1	1	1	-	-	./.	0	0	0	0	42	35	42	35	0	0	./.	12	5	13	6	43	32	43	32	13	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792151462	21	25644602	AG	A	1020	PASS	-	-	-	-	-	Del	-	D	25644602	25644604	1	88	920.577	-	-	1	1	1	-	-	./.	0	0	0	0	26	22	26	22	0	0	./.	7	10	7	10	29	35	29	35	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792151624	21	25990652	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	25990652	25990660	1	27	535.495	-	-	7	1	1	-	-	./.	0	0	0	0	29	22	29	22	0	0	./.	8	2	12	5	51	31	51	32	12	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792151835	21	26412215	TC	T	720	PASS	-	-	-	-	-	Del	-	D	26412215	26412217	1	45	649.819	-	-	1	1	1	-	-	./.	0	0	0	0	28	22	28	22	0	0	./.	4	8	6	11	27	31	27	31	6	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792153334	21	29143070	A	AT	1229	PASS	-	-	-	-	-	Ins	-	I	29143070	29143073	1	126	1122.13	-	-	2	1	1	-	-	./.	0	0	0	0	27	24	29	24	0	0	./.	13	8	15	10	46	40	46	40	15	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792154099	21	30773451	T	TG	360	PASS	BACH1	ENST00000422809	r.?	-	-	Ins	intronic	I	30773451	30773452	1	16	321.297	-	-	0	1	1	BACH1|ENST00000422809|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	BACH1|ENST00000422809|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	29	32	29	0	0	./.	3	3	4	5	35	35	36	35	4	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792154282	21	31207751	TTG	T	480	PASS	GRIK1	CCDS42913.1	r.?	-	-	Del	intronic	D	31207751	31207755	2	25	433.213	-	-	1	1	1	GRIK1|CCDS42913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRIK1|CCDS42913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	30	30	30	0	0	./.	4	4	7	5	37	41	37	41	7	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792155581	21	33594239	AT	A	840	PASS	-	-	-	-	-	Del	-	D	33594239	33594242	1	63	758.122	-	-	2	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	8	6	9	8	39	53	39	53	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792158732	21	39136911	ACCTC	A	358	PASS	KCNJ6	CCDS42927.1	r.?	-	-	Del	intronic	D	39136911	39136916	4	20	377.255	-	-	1	1	1	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	20	32	20	0	0	./.	4	3	5	4	33	44	33	44	5	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792158741	21	39152274	T	TG	629	PASS	KCNJ6	CCDS42927.1	r.?	-	-	Ins	intronic	I	39152274	39152279	1	42	588.443	-	-	4	1	1	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KCNJ6|CCDS42927.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	30	18	30	18	0	0	./.	6	5	9	6	30	36	30	36	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792163459	22	16955861	TACA	T	473	PASS	-	-	-	-	-	Del	-	D	16955861	16955865	3	99	976.519	-	-	1	1	1	-	-	./.	0	0	0	0	107	111	107	111	0	0	./.	10	8	10	8	111	147	111	147	10	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792163610	22	17122574	C	CGT	676	PASS	-	-	-	-	-	Ins	-	I	17122574	17122577	2	55	742.858	-	-	1	1	1	-	-	./.	0	0	0	0	23	20	23	20	0	0	./.	10	4	12	5	34	24	34	25	12	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792165485	22	19961474	TC	T	540	PASS	ARVCF	CCDS13771.1	r.?	-	-	Del	intronic	D	19961474	19961477	1	30	489.163	-	-	2	1	1	ARVCF|CCDS13771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ARVCF|CCDS13771.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	5	4	11	5	32	26	32	26	11	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792170136	22	28862103	AT	A	900	PASS	TTC28	CCDS46678.1	r.?	-	-	Del	intronic	D	28862103	28862106	1	42	815.271	-	-	2	1	1	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TTC28|CCDS46678.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	31	18	31	0	0	./.	13	2	17	6	44	29	44	29	17	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792170302	22	29164859	GT	G	780	PASS	CCDC117	CCDS13846.1	r.?	-	-	Del	upstream	D	29164859	29164864	1	56	706.568	-	-	4	1	1	CCDC117|CCDS13846.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	CCDC117|CCDS13846.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	27	27	27	27	0	0	./.	6	7	9	11	33	34	33	34	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792170327	22	29191275	CCA	C	1109	PASS	XBP1	CCDS13847.1	r.1116_1117delUG	c.?	p.?	Del	3'UTR variant	D	29191275	29191280	2	108	1032.68	-	-	2	1	1	XBP1|CCDS13847.1|r.1116_1117delUG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	XBP1|ENST00000344347|r.1049_1050delUG|c.1017_1018delTG|p.C339fs*11|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	24	22	24	22	0	0	./.	8	11	10	12	24	30	24	30	10	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792172204	22	32085597	CTG	C	780	PASS	C22orf30	CCDS13900.2	r.?	-	-	Del	intronic	D	32085597	32085600	2	50	706.568	-	-	1	1	1	C22orf30|CCDS13900.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C22orf30|CCDS13900.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	13	23	13	0	0	./.	9	4	12	6	38	28	38	28	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792174706	22	36585829	AG	A	720	PASS	APOL4	ENST00000404685	r.2572delC	c.?	p.?	Del	3'UTR variant	D	36585829	36585832	1	48	652.217	-	-	2	1	1	APOL4|ENST00000404685|r.2572delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	APOL4|ENST00000404685|r.2572delC|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	20	16	20	16	0	0	./.	7	5	8	9	41	28	41	28	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792175594	22	38352061	CTT	C	420	PASS	POLR2F	CCDS13963.1	r.?	-	-	Del	intronic	D	38352061	38352065	2	18	380.46	-	-	3	1	1	POLR2F|CCDS13963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POLR2F|CCDS13963.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	38	26	38	26	0	0	./.	5	2	11	9	51	46	51	46	11	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792176505	22	39859363	CCTCGGTCACCCAGACCTGTTCCTTCTCT	C	435	PASS	MGAT3	CCDS13994.2	r.?	-	-	Del	intronic	D	39859363	39859393	28	66	811.659	-	-	1	1	1	MGAT3|CCDS13994.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MGAT3|CCDS13994.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	26	18	26	0	0	./.	5	10	4	7	25	26	26	29	5	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792180466	22	46431880	GC	G	629	PASS	-	-	-	-	-	Del	-	D	46431880	46431887	1	36	595.457	-	-	6	1	1	-	-	./.	0	0	0	0	25	21	25	21	0	0	./.	3	8	4	9	24	39	24	39	4	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792181151	22	47998053	TG	T	360	PASS	-	-	-	-	-	Del	-	D	47998053	47998056	1	15	326.108	-	-	2	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	4	2	7	3	35	17	35	17	7	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792181559	22	48890517	AG	A	660	PASS	FAM19A5	CCDS46728.1	r.?	-	-	Del	intronic	D	48890517	48890519	1	40	597.263	-	-	1	1	1	FAM19A5|CCDS46728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM19A5|CCDS46728.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	7	4	8	5	19	22	19	22	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792184937	3	4857957	TG	T	929	PASS	ITPR1	CCDS46740.1	r.?	-	-	Del	intronic	D	4857957	4857959	1	77	858.435	-	-	1	1	1	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITPR1|CCDS46740.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	33	34	33	34	0	0	./.	6	10	8	12	38	35	38	35	8	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792185391	3	5590042	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	5590042	5590049	1	35	530.502	-	-	6	1	1	-	-	./.	0	0	0	0	22	28	23	28	0	0	./.	4	6	9	7	38	40	38	40	9	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792186565	3	8144897	A	AT	569	PASS	-	-	-	-	-	Ins	-	I	8144897	8144899	1	32	530.501	-	-	1	1	1	-	-	./.	0	0	0	0	26	27	26	27	0	0	./.	7	3	7	6	31	39	31	41	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792188107	3	11230241	AG	A	840	PASS	HRH1	CCDS2604.1	r.?	-	-	Del	intronic	D	11230241	11230243	1	64	751.131	-	-	1	1	1	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	HRH1|CCDS2604.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	32	21	32	0	0	./.	7	7	9	7	24	29	24	29	9	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792190716	3	16502761	T	TA	300	PASS	RFTN1	CCDS33712.1	r.?	-	-	Ins	intronic	I	16502761	16502771	1	12	265.251	-	-	9	1	1	RFTN1|CCDS33712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RFTN1|CCDS33712.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	25	20	25	0	0	./.	3	2	5	2	32	33	33	35	5	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792190826	3	16730074	TG	T	1020	PASS	-	-	-	-	-	Del	-	D	16730074	16730076	1	90	910.884	-	-	1	1	1	-	-	./.	0	0	0	0	21	33	21	33	0	0	./.	8	9	9	10	29	34	29	34	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792190934	3	17060014	TC	T	420	PASS	PLCL2	CCDS33713.1	r.?	-	-	Del	intronic	D	17060014	17060016	1	20	375.565	-	-	1	1	1	PLCL2|CCDS33713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PLCL2|CCDS33713.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	23	17	23	0	0	./.	4	3	6	8	34	25	34	25	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792192111	3	20141477	TG	T	749	PASS	KAT2B	CCDS2634.1	r.?	-	-	Del	intronic	D	20141477	20141480	1	44	697.479	-	-	2	1	1	KAT2B|CCDS2634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KAT2B|CCDS2634.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	17	31	17	0	0	./.	3	10	8	10	31	26	31	26	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792192238	3	20346714	GC	G	720	PASS	-	-	-	-	-	Del	-	D	20346714	20346720	1	48	643.827	-	-	5	1	1	-	-	./.	0	0	0	0	21	26	21	26	0	0	./.	7	5	8	8	35	21	35	21	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792193081	3	22438361	TGATA	T	527	PASS	-	-	-	-	-	Del	-	D	22438361	22438366	4	63	747.519	-	-	1	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	8	6	8	7	36	17	38	17	10	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792194714	3	26189257	TGA	T	300	PASS	-	-	-	-	-	Del	-	D	26189257	26189276	2	12	268.261	-	-	9	1	-	-	-	./.	0	0	0	0	20	16	20	16	0	0	./.	2	3	2	4	22	30	22	30	2	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792202274	3	44002116	G	GTGGAAA	261	PASS	-	-	-	-	-	Ins	-	I	44002116	44002117	6	30	448.552	-	-	0	1	1	-	-	./.	0	0	0	0	17	20	17	20	0	0	./.	5	4	6	4	42	17	42	17	6	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792202679	3	44873214	TAGG	T	718	PASS	KIF15	CCDS33744.1	r.?	-	-	Del	intronic	D	44873214	44873220	3	56	696.275	-	-	1	1	1	KIF15|CCDS33744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	KIF15|CCDS33744.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	23	21	23	0	0	./.	6	7	9	10	35	30	35	30	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792215138	3	71029074	AAAC	A	565	PASS	FOXP1	CCDS2914.1	r.?	-	-	Del	intronic	D	71029074	71029079	3	48	643.827	-	-	1	1	1	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FOXP1|CCDS2914.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	31	22	31	0	0	./.	7	5	8	8	47	41	47	41	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792216003	3	72652505	TCAAGCAATTCTC	T	319	PASS	AC103560.1	ENST00000509224	r.?	-	-	Del	intronic	D	72652505	72652519	12	42	588.97	-	-	1	1	1	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	AC103560.1|ENST00000509224|r.?|-|-|non_protein_coding:intron:deletion:intron_variant|SO:0000011:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	14	26	14	0	0	./.	6	5	6	5	35	20	35	20	6	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792217191	3	75258947	AT	A	660	PASS	-	-	-	-	-	Del	-	D	75258947	75258950	1	40	589.572	-	-	2	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	7	4	10	5	38	33	38	33	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792219052	3	76549355	G	GCGTCCTTA	319	PASS	ROBO2	ENST00000487694	r.?	-	-	Ins	intronic	I	76549355	76549356	8	40	537.193	-	-	0	1	1	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ROBO2|ENST00000487694|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	32	22	32	22	0	0	./.	7	4	7	4	36	25	36	25	7	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792224001	3	88895843	G	GAC	960	PASS	-	-	-	-	-	Ins	-	I	88895843	88895847	2	80	838.567	-	-	1	1	1	-	-	./.	0	0	0	0	33	18	33	18	0	0	./.	9	7	11	10	39	37	39	38	11	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792224186	3	89323729	AACAG	A	598	PASS	EPHA3	CCDS2922.1	r.?	-	-	Del	intronic	D	89323729	89323737	4	42	590.174	-	-	1	1	1	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EPHA3|CCDS2922.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	20	18	20	0	0	./.	5	6	8	7	41	34	41	34	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792224436	3	90041522	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	90041522	90041532	1	6	264.649	-	-	9	1	1	-	-	./.	0	0	0	0	35	28	35	28	0	0	./.	5	0	5	0	46	44	46	44	5	0	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792229004	3	104933738	TC	T	1109	PASS	-	-	-	-	-	Del	-	D	104933738	104933740	1	98	1018.79	-	-	1	1	1	-	-	./.	0	0	0	0	24	30	24	30	0	0	./.	13	6	17	9	47	46	47	46	17	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792229272	3	105488930	T	TG	300	PASS	CBLB	CCDS2948.1	r.?	-	-	Ins	intronic	I	105488930	105488931	1	10	265.251	-	-	0	1	1	CBLB|CCDS2948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CBLB|CCDS2948.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	29	33	30	34	0	0	./.	1	4	2	4	31	55	31	55	2	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792229742	3	106606317	GT	G	660	PASS	-	-	-	-	-	Del	-	D	106606317	106606320	1	40	590.174	-	-	2	1	1	-	-	./.	0	0	0	0	27	35	27	35	0	0	./.	7	4	15	8	55	43	55	43	15	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792231797	3	111366491	TG	T	720	PASS	CD96	CCDS2959.1	r.1759delG	c.1628delG	p.W543fs*8	Del	frameshift	D	111366491	111366494	1	45	643.827	-	-	2	1	1	CD96|CCDS2959.1|r.1759delG|c.1628delG|p.W543fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CD96|CCDS2959.1|r.1759delG|c.1628delG|p.W543fs*8|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	27	31	27	31	0	0	./.	4	8	6	10	28	43	28	43	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792235583	3	119974812	AAT	A	780	PASS	GPR156	CCDS2997.1	r.?	-	-	Del	intronic	D	119974812	119974817	2	56	697.479	-	-	2	1	1	GPR156|CCDS2997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GPR156|CCDS2997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	20	28	20	0	0	./.	6	7	10	7	46	42	46	42	10	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792235593	3	119987296	TC	T	600	PASS	GPR156	CCDS2997.1	r.?	-	-	Del	intronic	D	119987296	119987298	1	36	536.522	-	-	1	1	1	GPR156|CCDS2997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GPR156|CCDS2997.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	21	24	21	0	0	./.	5	5	6	7	28	40	28	40	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792236402	3	121846466	ACCCAG	A	687	PASS	-	-	-	-	-	Del	-	D	121846466	121846472	5	44	697.479	-	-	1	1	1	-	-	./.	0	0	0	0	27	21	27	21	0	0	./.	3	10	7	14	51	36	51	36	7	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792237519	3	124312110	A	AT	749	PASS	KALRN	CCDS3028.1	r.?	-	-	Ins	intronic	I	124312110	124312112	1	54	684.233	-	-	1	1	1	KALRN|CCDS3028.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	KALRN|CCDS3028.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	21	22	21	0	0	./.	8	5	9	5	40	27	40	27	9	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792239430	3	128592304	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	128592304	128592314	1	12	262.24	-	-	9	1	1	-	-	./.	0	0	0	0	26	17	26	17	0	0	./.	2	3	3	3	46	47	48	47	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792242352	3	135897688	C	CT	600	PASS	MSL2	CCDS33861.1	r.?	-	-	Ins	intronic	I	135897688	135897696	1	35	530.502	-	-	7	1	1	MSL2|CCDS33861.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	MSL2|CCDS33861.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	27	28	28	0	0	./.	4	6	4	8	19	29	20	29	4	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792245716	3	142831383	CAT	C	480	PASS	-	-	-	-	-	Del	-	D	142831383	142831386	2	25	429.218	-	-	1	1	1	-	-	./.	0	0	0	0	23	25	23	25	0	0	./.	4	4	7	6	26	30	26	30	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792245719	3	142841764	G	GT	720	PASS	CHST2	CCDS3129.1	r.3490_3491insu	c.?	p.?	Ins	3'UTR variant	I	142841764	142841767	1	45	636.602	-	-	2	1	1	CHST2|CCDS3129.1|r.3490_3491insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	CHST2|CCDS3129.1|r.3490_3491insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	17	36	17	36	0	0	./.	4	8	6	10	32	43	33	43	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792248465	3	149486622	G	GC	960	PASS	C3orf16	ENST00000446160	r.?	-	-	Ins	intronic	I	149486622	149486626	1	72	847.598	-	-	3	1	1	C3orf16|ENST00000446160|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	C3orf16|ENST00000446160|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	31	31	32	32	0	0	./.	5	11	8	14	24	40	24	41	8	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792250485	3	153638649	C	CA	300	PASS	-	-	-	-	-	Ins	-	I	153638649	153638659	1	10	265.251	-	-	9	1	1	-	-	./.	0	0	0	0	32	31	33	32	0	0	./.	4	1	4	2	48	42	48	43	4	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792251149	3	155335747	TCCATG	T	747	PASS	PLCH1	CCDS33881.1	r.?	-	-	Del	intronic	D	155335747	155335753	5	55	751.131	-	-	1	1	1	PLCH1|CCDS33881.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	PLCH1|CCDS33881.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	34	25	34	0	0	./.	4	10	5	13	37	30	37	30	5	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792251391	3	155712714	AG	A	960	PASS	-	-	-	-	-	Del	-	D	155712714	155712716	1	65	858.435	-	-	1	1	1	-	-	./.	0	0	0	0	31	22	31	22	0	0	./.	12	4	14	6	42	23	42	23	14	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792252939	3	159988375	G	GA	300	PASS	IFT80	CCDS3188.1	r.?	-	-	Ins	intronic	I	159988375	159988385	1	12	264.047	-	-	9	1	1	IFT80|CCDS3188.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	IFT80|CCDS3188.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	21	27	21	28	0	0	./.	3	2	3	3	57	49	58	49	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792255800	3	167475447	CTATAATCCTAGCACTTCGGGAGGTTG	C	319	PASS	SERPINI1	CCDS3203.1	r.?	-	-	Del	intronic	D	167475447	167475474	26	40	589.572	-	-	1	1	1	SERPINI1|CCDS3203.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	SERPINI1|CCDS3203.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	16	16	16	16	0	0	./.	4	7	3	5	20	25	21	27	4	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792255808	3	167485692	G	GT	660	PASS	SERPINI1	CCDS3203.1	r.?	-	-	Ins	intronic	I	167485692	167485700	1	42	583.552	-	-	7	1	1	SERPINI1|CCDS3203.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	SERPINI1|CCDS3203.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	32	23	32	0	0	./.	5	6	7	9	46	36	46	36	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792258116	3	172381331	GTC	G	516	PASS	NCEH1	CCDS33893.1	r.?	-	-	Del	intronic	D	172381331	172381335	2	30	481.064	-	-	1	1	1	NCEH1|CCDS33893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NCEH1|CCDS33893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	34	27	34	0	0	./.	4	5	8	7	28	30	28	30	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792260463	3	177698972	TATC	T	600	PASS	-	-	-	-	-	Del	-	D	177698972	177698978	3	32	535.92	-	-	1	1	1	-	-	./.	0	0	0	0	19	21	19	21	0	0	./.	3	7	5	8	16	26	16	26	5	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792270756	3	197789869	TC	T	900	PASS	-	-	-	-	-	Del	-	D	197789869	197789871	1	72	803.579	-	-	1	1	1	-	-	./.	0	0	0	0	24	22	24	22	0	0	./.	7	8	10	13	41	38	41	38	10	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792271724	4	1830765	AGCTGACCCCCCCACCTCCCTCCTGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGGGCTGACCCCCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCCGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCAGACGGGGCGGCTGGCCAGGCGGAGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGGCTGGCCGGGCGGGGG	A	269	PASS	LETM1	CCDS3355.1	r.?	-	-	Del	intronic	D	1830765	1831133	356	12	252.445	-	-	1	1	1	LETM1|CCDS3355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LETM1|CCDS3355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	21	26	21	0	0	./.	2	3	0	0	29	24	31	27	2	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792271726	4	1831596	GAC	G	300	PASS	LETM1	CCDS3355.1	r.?	-	-	Del	intronic	D	1831596	1831615	2	12	268.099	-	-	9	1	1	LETM1|CCDS3355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LETM1|CCDS3355.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	17	23	17	0	0	./.	2	3	3	4	28	51	28	51	3	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792274300	4	7048256	CTATGTGA	C	319	PASS	TADA2B	CCDS47007.1	r.?	-	-	Del	intronic	D	7048256	7048265	7	40	589.818	-	-	1	1	1	TADA2B|CCDS47007.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TADA2B|CCDS47007.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	17	19	17	0	0	./.	7	4	8	4	38	11	38	11	8	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792279487	4	19324845	TCTTAGCATG	T	348	PASS	-	-	-	-	-	Del	-	D	19324845	19324856	9	45	643.438	-	-	1	1	1	-	-	./.	0	0	0	0	25	36	25	36	0	0	./.	8	4	9	5	34	46	35	46	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792283801	4	28687131	TTTC	T	896	PASS	-	-	-	-	-	Del	-	D	28687131	28687139	3	84	910.332	-	-	2	1	1	-	-	./.	0	0	0	0	24	31	24	31	0	0	./.	11	6	17	9	41	38	41	38	17	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792283903	4	28859024	GC	G	960	PASS	-	-	-	-	-	Del	-	D	28859024	28859026	1	72	857.917	-	-	1	1	1	-	-	./.	0	0	0	0	33	20	33	20	0	0	./.	5	11	9	14	38	42	38	42	9	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792285898	4	33322203	C	CAT	480	PASS	-	-	-	-	-	Ins	-	I	33322203	33322213	2	24	419.325	-	-	4	1	-	-	-	./.	0	0	0	0	26	30	26	30	0	0	./.	3	5	11	11	35	36	35	36	11	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792288479	4	38959628	GA	G	960	PASS	-	-	-	-	-	Del	-	D	38959628	38959631	1	77	857.315	-	-	2	1	1	-	-	./.	0	0	0	0	27	37	27	37	0	0	./.	10	6	14	12	44	42	44	42	14	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792291859	4	44637799	TGGTTCAGCAAACTCTTGTTATATGTGAAACAATCAAACATAAGACACTGTACACTGCAGGCTGACAGCACACATTAAGTGCTAATTATTGCTATTATTCTTCTA	T	261	PASS	YIPF7	ENST00000332990	r.?	-	-	Del	intronic	D	44637799	44637905	104	30	482.578	-	-	1	1	1	YIPF7|ENST00000332990|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	YIPF7|ENST00000332990|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	27	27	27	27	0	0	./.	5	4	0	0	20	17	25	21	5	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792292525	4	46409315	GAA	G	1380	PASS	GABRA2	ENST00000510861	r.?	-	-	Del	intronic	D	46409315	46409318	2	150	1231.45	-	-	2	1	1	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	GABRA2|ENST00000510861|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	18	24	18	0	0	./.	9	14	10	16	32	38	32	38	10	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792295047	4	52860031	G	GA	660	PASS	LRRC66	CCDS43229.1	r.3163_3164insu	c.?	p.?	Ins	3'UTR variant	I	52860031	52860034	1	42	579.583	-	-	2	1	1	LRRC66|CCDS43229.1|r.3163_3164insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	LRRC66|CCDS43229.1|r.3163_3164insu|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	26	19	26	19	0	0	./.	5	6	7	10	27	38	27	38	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792298022	4	59065290	CAG	C	1249	PASS	-	-	-	-	-	Del	-	D	59065290	59065293	2	132	1125.41	-	-	1	1	1	-	-	./.	0	0	0	0	26	27	26	27	0	0	./.	10	11	11	12	39	36	39	36	11	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792298119	4	59424646	GA	G	1140	PASS	-	-	-	-	-	Del	-	D	59424646	59424655	1	110	1018.78	-	-	8	1	1	-	-	./.	0	0	0	0	19	22	19	22	0	0	./.	10	9	14	13	35	38	35	38	14	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792300111	4	63855199	ATCATATT	A	551	PASS	-	-	-	-	-	Del	-	D	63855199	63855207	7	110	1018.78	-	-	1	1	1	-	-	./.	0	0	0	0	28	39	28	39	0	0	./.	9	10	11	15	34	40	34	40	11	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792301414	4	66713845	CT	C	900	PASS	-	-	-	-	-	Del	-	D	66713845	66713847	1	72	804.297	-	-	1	1	1	-	-	./.	0	0	0	0	27	26	27	26	0	0	./.	8	7	10	8	39	42	39	42	10	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792301468	4	66801126	A	AT	749	PASS	-	-	-	-	-	Ins	-	I	66801126	66801130	1	56	687.424	-	-	3	1	1	-	-	./.	0	0	0	0	33	21	33	22	0	0	./.	7	6	8	9	38	42	38	42	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792302731	4	69575221	CCAG	C	536	PASS	-	-	-	-	-	Del	-	D	69575221	69575226	3	36	588.012	-	-	1	1	1	-	-	./.	0	0	0	0	23	14	23	14	0	0	./.	8	3	11	4	33	19	33	19	11	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792305700	4	76485207	AAG	A	360	PASS	C4orf26	CCDS3569.1	r.?	-	-	Del	intronic	D	76485207	76485225	2	16	320.515	-	-	8	1	1	C4orf26|CCDS3569.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C4orf26|CCDS3569.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	19	21	19	0	0	./.	3	3	3	3	28	39	28	39	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792306424	4	77851151	AG	A	600	PASS	-	-	-	-	-	Del	-	D	77851151	77851153	1	36	536.198	-	-	1	1	1	-	-	./.	0	0	0	0	23	29	23	29	0	0	./.	5	5	6	6	30	38	30	38	6	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792307756	4	80899242	TGTTTCTTCA	T	261	PASS	ANTXR2	CCDS47086.1	r.1260_1268delUGAAGAAAC	c.1257_1265delTGAAGAAAC	p.T422_E424delTEE	Del	inframe	D	80899242	80899253	9	28	481.976	-	-	1	1	1	ANTXR2|CCDS47086.1|r.1260_1268delUGAAGAAAC|c.1257_1265delTGAAGAAAC|p.T422_E424delTEE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	ANTXR2|CCDS47086.1|r.1260_1268delUGAAGAAAC|c.1257_1265delTGAAGAAAC|p.T422_E424delTEE|protein_coding:CDS:exon:deletion:inframe_variant:inframe_codon_loss|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001650:SO:0001652	./.	0	0	0	0	18	23	18	23	0	0	./.	3	6	6	7	27	26	27	26	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792310532	4	87096724	G	GTA	840	PASS	MAPK10	CCDS3612.1	r.?	-	-	Ins	intronic	I	87096724	87096725	2	64	732.615	-	-	0	1	1	MAPK10|CCDS3612.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	MAPK10|CCDS3612.1|r.?|-|-|protein_coding:five_prime_UTR:intron:insertion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	12	23	12	0	0	./.	7	7	10	10	32	37	32	37	10	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792312631	4	91663242	CAG	C	420	PASS	FAM190A	CCDS47100.1	r.?	-	-	Del	intronic	D	91663242	91663262	2	18	372.93	-	-	9	1	-	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAM190A|CCDS47100.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	23	23	23	0	0	./.	2	5	2	5	35	40	35	40	2	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792315623	4	99100271	CA	C	749	PASS	-	-	-	-	-	Del	-	D	99100271	99100273	1	54	697.057	-	-	1	1	1	-	-	./.	0	0	0	0	27	26	27	26	0	0	./.	8	5	9	5	34	43	34	43	9	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792316567	4	101241473	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	101241473	101241483	1	10	265.089	-	-	9	1	1	-	-	./.	0	0	0	0	41	33	41	33	0	0	./.	1	4	1	4	40	41	40	42	1	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792316943	4	102170691	CA	C	300	PASS	PPP3CA	CCDS34037.1	r.?	-	-	Del	intronic	D	102170691	102170701	1	12	265.691	-	-	9	1	1	PPP3CA|CCDS34037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PPP3CA|CCDS34037.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	21	23	21	0	0	./.	3	2	3	2	46	45	46	45	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792317996	4	104911598	AC	A	480	PASS	-	-	-	-	-	Del	-	D	104911598	104911600	1	24	428.958	-	-	1	1	1	-	-	./.	0	0	0	0	38	19	38	19	0	0	./.	5	3	7	6	36	36	36	36	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792321311	4	112947230	AT	A	960	PASS	-	-	-	-	-	Del	-	D	112947230	112947232	1	80	857.315	-	-	1	1	1	-	-	./.	0	0	0	0	25	29	25	29	0	0	./.	7	9	12	9	50	39	50	39	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792323309	4	117189878	CTTT	C	598	PASS	-	-	-	-	-	Del	-	D	117189878	117189884	3	40	589.818	-	-	5	1	1	-	-	./.	0	0	0	0	29	21	29	21	0	0	./.	4	7	8	11	32	35	32	35	8	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792324178	4	119337358	T	TA	1440	PASS	-	-	-	-	-	Ins	-	I	119337358	119337360	1	165	1272.43	-	-	1	1	1	-	-	./.	0	0	0	0	25	27	25	27	0	0	./.	14	10	16	14	49	40	49	40	16	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792327426	4	126315015	A	ATT	687	PASS	FAT4	CCDS3732.3	r.?	-	-	Ins	intronic	I	126315015	126315019	2	54	679.598	-	-	3	1	1	FAT4|CCDS3732.3|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAT4|CCDS3732.3|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	24	28	25	0	0	./.	8	5	8	9	33	43	34	43	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792327441	4	126349647	GTC	G	300	PASS	FAT4	CCDS3732.3	r.?	-	-	Del	intronic	D	126349647	126349663	2	12	267.497	-	-	7	1	1	FAT4|CCDS3732.3|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FAT4|CCDS3732.3|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	30	14	30	0	0	./.	2	3	2	3	36	27	36	27	2	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792327977	4	127624630	TA	T	840	PASS	-	-	-	-	-	Del	-	D	127624630	127624635	1	48	749.473	-	-	4	1	-	-	-	./.	0	0	0	0	18	18	18	18	0	0	./.	3	11	3	13	19	26	19	26	3	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792329285	4	130614284	CT	C	1440	PASS	-	-	-	-	-	Del	-	D	130614284	130614286	1	169	1286.88	-	-	1	1	1	-	-	./.	0	0	0	0	27	34	27	34	0	0	./.	12	12	12	13	39	41	39	41	12	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792334297	4	141621952	TG	T	780	PASS	TBC1D9	CCDS47136.1	r.?	-	-	Del	intronic	D	141621952	141621954	1	50	695.853	-	-	1	1	1	TBC1D9|CCDS47136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	TBC1D9|CCDS47136.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	15	36	15	36	0	0	./.	4	9	6	14	17	31	17	31	6	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792342024	4	160185418	T	TGA	840	PASS	RAPGEF2	CCDS43277.1	r.?	-	-	Ins	upstream	I	160185418	160185429	2	63	733.819	-	-	5	1	1	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	RAPGEF2|ENST00000505478|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	34	26	35	26	0	0	./.	6	8	8	10	42	38	42	38	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792342043	4	160240986	TAA	T	780	PASS	RAPGEF2	CCDS43277.1	r.?	-	-	Del	intronic	D	160240986	160240989	2	54	696.455	-	-	2	1	1	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RAPGEF2|CCDS43277.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	20	30	20	0	0	./.	5	8	6	8	31	40	31	40	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792342284	4	160715139	AT	A	420	PASS	-	-	-	-	-	Del	-	D	160715139	160715149	1	18	375.339	-	-	9	1	1	-	-	./.	0	0	0	0	27	32	27	32	0	0	./.	2	5	2	5	51	46	51	46	2	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792343211	4	162678441	CT	C	660	PASS	FSTL5	CCDS3802.1	r.?	-	-	Del	intronic	D	162678441	162678444	1	42	589.216	-	-	2	1	1	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	FSTL5|CCDS3802.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	26	21	26	0	0	./.	5	6	8	10	33	27	33	27	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792348182	4	173117715	TGAATCCAGTAGCACATTAAAAAGCTTATCCACCACGATCAAGTCAGCTTCATCCTCAATGCAAGGCTGGTTCAACTTATAC	T	336	PASS	GALNTL6	CCDS34104.1	r.?	-	-	Del	intronic	D	173117715	173117797	81	48	643.438	-	-	1	1	1	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GALNTL6|CCDS34104.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	23	29	23	0	0	./.	7	5	0	0	26	26	33	31	7	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792350024	4	177417076	TAC	T	663	PASS	-	-	-	-	-	Del	-	D	177417076	177417079	2	48	750.677	-	-	1	1	1	-	-	./.	0	0	0	0	27	38	27	38	0	0	./.	11	3	14	3	39	24	39	24	14	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792352659	4	182642191	GGACAGC	G	319	PASS	-	-	-	-	-	Del	-	D	182642191	182642199	6	42	589.818	-	-	1	1	1	-	-	./.	0	0	0	0	15	25	15	25	0	0	./.	5	6	6	9	23	35	25	36	8	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792353715	4	184468562	C	CT	600	PASS	-	-	-	-	-	Ins	-	I	184468562	184468571	1	32	528.371	-	-	8	1	1	-	-	./.	0	0	0	0	26	29	26	29	0	0	./.	3	7	4	11	30	29	32	29	4	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792361817	5	7782545	C	CTG	720	PASS	ADCY2	CCDS3872.2	r.?	-	-	Ins	intronic	I	7782545	7782549	2	48	629.683	-	-	1	1	1	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ADCY2|CCDS3872.2|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	32	25	33	25	0	0	./.	5	7	6	9	34	33	34	33	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792363367	5	11183015	T	TG	449	PASS	CTNND2	CCDS3881.1	r.?	-	-	Ins	intronic	I	11183015	11183018	1	24	423.802	-	-	2	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	31	24	33	0	0	./.	3	5	7	8	28	30	28	30	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792363474	5	11494942	AT	A	689	PASS	CTNND2	CCDS3881.1	r.?	-	-	Del	intronic	D	11494942	11494944	1	49	644.734	-	-	1	1	1	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CTNND2|CCDS3881.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	40	28	40	0	0	./.	6	6	6	10	44	46	44	46	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792365208	5	15945674	GT	G	989	PASS	-	-	-	-	-	Del	-	D	15945674	15945678	1	84	913.373	-	-	3	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	11	6	12	7	33	26	33	26	12	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792368815	5	23054717	TAAAA	T	540	PASS	-	-	-	-	-	Del	-	D	23054717	23054724	4	30	483.551	-	-	6	1	1	-	-	./.	0	0	0	0	23	31	23	31	0	0	./.	4	5	5	7	23	29	23	29	5	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792373289	5	32137009	ACAA	ATT	567	PASS	GOLPH3	CCDS3896.1	r.?	-	-	Complex	intronic	DI	32137010	32137012	3	42	0	-	-	0	1	1	GOLPH3|CCDS3896.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	GOLPH3|CCDS3896.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	24	30	24	30	0	0	./.	5	6	0	0	39	50	39	50	5	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792374526	5	34467835	AAG	A	597	PASS	-	-	-	-	-	Del	-	D	34467835	34467839	2	32	537.279	-	-	1	1	1	-	-	./.	0	0	0	0	23	17	23	17	0	0	./.	3	7	4	8	25	36	25	36	4	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792376409	5	38462796	CAT	C	600	PASS	EGFLAM	CCDS3924.1	r.?	-	-	Del	intronic	D	38462796	38462799	2	35	536.074	-	-	1	1	1	EGFLAM|CCDS3924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EGFLAM|CCDS3924.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	26	22	26	0	0	./.	4	6	5	7	24	29	24	29	5	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792379171	5	45085861	AT	A	420	PASS	-	-	-	-	-	Del	-	D	45085861	45085863	1	20	376.095	-	-	1	1	1	-	-	./.	0	0	0	0	27	28	27	28	0	0	./.	3	4	6	7	33	34	33	34	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792379530	5	46260646	TA	T	780	PASS	-	-	-	-	-	Del	-	D	46260646	46260652	1	50	692.441	-	-	5	1	1	-	-	./.	0	0	0	0	33	29	33	29	0	0	./.	4	9	5	14	28	43	28	43	5	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792380675	5	52126819	AGT	A	626	PASS	ITGA1	CCDS3955.1	r.?	-	-	Del	intronic	D	52126819	52126825	2	40	591.006	-	-	2	1	1	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ITGA1|CCDS3955.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	21	20	21	0	0	./.	7	4	10	5	26	27	26	27	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792383424	5	57522472	A	AT	389	PASS	-	-	-	-	-	Ins	-	I	57522472	57522480	1	18	371.881	-	-	7	1	1	-	-	./.	0	0	0	0	32	19	32	19	0	0	./.	5	2	10	5	37	37	37	38	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792385706	5	63360359	TAGA	T	987	PASS	-	-	-	-	-	Del	-	D	63360359	63360366	3	84	967.101	-	-	2	1	1	-	-	./.	0	0	0	0	19	35	19	35	0	0	./.	5	13	5	13	25	33	25	33	5	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792386147	5	64618312	AT	A	660	PASS	ADAMTS6	CCDS3983.2	r.?	-	-	Del	intronic	D	64618312	64618315	1	30	591.006	-	-	2	1	1	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ADAMTS6|CCDS3983.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	26	32	26	0	0	./.	2	9	9	16	39	40	39	40	9	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792387742	5	67756229	A	ATTCTCTTATTATATTTAATGTTG	435	PASS	-	-	-	-	-	Ins	-	I	67756229	67756254	23	70	598.207	-	-	1	1	1	-	-	./.	0	0	0	0	32	29	33	29	0	0	./.	6	9	0	4	30	47	36	52	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792390367	5	74369247	CAGA	CAA	720	PASS	ANKRD31	CCDS47233.1	r.?	-	-	Complex	intronic	DI	74369248	74369250	3	45	0	-	-	0	1	1	ANKRD31|CCDS47233.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	ANKRD31|CCDS47233.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	25	23	25	23	0	0	./.	8	4	0	0	36	25	36	25	8	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792397997	5	91086822	AG	A	1020	PASS	-	-	-	-	-	Del	-	D	91086822	91086824	1	88	904.945	-	-	1	1	1	-	-	./.	0	0	0	0	25	31	25	31	0	0	./.	10	7	12	9	37	38	37	38	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792398746	5	93473798	TG	T	704	PASS	-	-	-	-	-	Del	-	D	93473798	93473802	1	45	644.132	-	-	3	1	1	-	-	./.	0	0	0	0	21	36	21	36	0	0	./.	4	8	7	9	22	37	22	37	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792399137	5	94517307	TGA	T	360	PASS	MCTP1	ENST00000515393	r.?	-	-	Del	intronic	D	94517307	94517326	2	16	322.367	-	-	9	1	1	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MCTP1|ENST00000515393|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	19	22	19	0	0	./.	3	3	3	4	48	46	48	46	3	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792409472	5	123533393	GC	G	780	PASS	-	-	-	-	-	Del	-	D	123533393	123533396	1	56	698.462	-	-	2	1	1	-	-	./.	0	0	0	0	20	27	20	27	0	0	./.	6	7	7	9	23	25	23	25	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792413708	5	135050185	CAGTGGAAGCCA	C	406	PASS	-	-	-	-	-	Del	-	D	135050185	135050198	11	63	751.588	-	-	1	1	1	-	-	./.	0	0	0	0	21	16	21	16	0	0	./.	6	8	6	8	18	16	18	16	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792416495	5	141968863	GTC	G	987	PASS	FGF1	CCDS4275.1	r.?	-	-	Del	downstream	D	141968863	141968867	2	96	965.897	-	-	1	1	1	FGF1|CCDS4275.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	FGF1|CCDS4275.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	21	18	21	18	0	0	./.	7	11	7	12	19	25	19	25	7	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792420027	5	152156785	GC	G	780	PASS	-	-	-	-	-	Del	-	D	152156785	152156787	1	44	698.462	-	-	1	1	1	-	-	./.	0	0	0	0	30	28	30	28	0	0	./.	10	3	12	9	24	23	24	23	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792429704	5	176138712	AGGGCG	A	356	PASS	-	-	-	-	-	Del	-	D	176138712	176138718	5	24	429.823	-	-	1	1	1	-	-	./.	0	0	0	0	22	19	22	19	0	0	./.	5	3	9	3	27	18	27	18	9	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792435756	6	7241569	TC	T	600	PASS	RREB1	CCDS34335.1	r.?	-	-	Del	intronic	D	7241569	7241572	1	32	524.843	-	-	2	1	1	RREB1|CCDS34335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RREB1|CCDS34335.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	23	21	23	0	0	./.	3	7	9	8	27	20	27	20	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792436824	6	9039044	GTAA	G	478	PASS	-	-	-	-	-	Del	-	D	9039044	9039048	3	28	482.593	-	-	1	1	1	-	-	./.	0	0	0	0	27	24	27	24	0	0	./.	3	6	6	7	23	33	23	33	6	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792442198	6	18835790	GA	G	780	PASS	-	-	-	-	-	Del	-	D	18835790	18835796	1	56	697.949	-	-	5	1	1	-	-	./.	0	0	0	0	32	30	32	30	0	0	./.	7	6	10	9	39	42	39	42	10	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792442252	6	19086831	GGA	G	1037	PASS	-	-	-	-	-	Del	-	D	19086831	19086834	2	100	964.585	-	-	1	1	1	-	-	./.	0	0	0	0	37	33	37	33	0	0	./.	9	9	12	9	38	30	38	30	12	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792442385	6	19399575	CAG	C	300	PASS	-	-	-	-	-	Del	-	D	19399575	19399593	2	12	268.442	-	-	8	1	1	-	-	./.	0	0	0	0	25	29	25	29	0	0	./.	3	2	4	2	31	29	31	29	4	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792443233	6	21028156	C	CT	600	PASS	CDKAL1	CCDS4546.1	r.?	-	-	Ins	intronic	I	21028156	21028160	1	36	530.261	-	-	3	1	1	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CDKAL1|CCDS4546.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	23	28	23	0	0	./.	5	5	9	6	35	27	35	27	9	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792444661	6	23610990	AG	A	1080	PASS	-	-	-	-	-	Del	-	D	23610990	23610993	1	99	966.391	-	-	2	1	1	-	-	./.	0	0	0	0	30	29	30	29	0	0	./.	8	10	11	13	48	50	48	50	11	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792445397	6	24865018	T	TG	629	PASS	FAM65B	CCDS47383.1	r.?	-	-	Ins	intronic	I	24865018	24865020	1	42	581.541	-	-	1	1	1	FAM65B|CCDS47383.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM65B|CCDS47383.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	22	20	23	21	0	0	./.	6	5	10	7	32	33	33	33	10	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792445417	6	24931439	AG	A	1320	PASS	-	-	-	-	-	Del	-	D	24931439	24931441	1	140	1170.91	-	-	1	1	1	-	-	./.	0	0	0	0	19	25	19	25	0	0	./.	9	13	13	18	57	59	57	59	13	18	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792459023	6	49184400	ATACAATTA	ACAC	464	PASS	-	-	-	-	-	Complex	-	DI	49184401	49184408	8	80	0	-	-	0	1	1	-	-	./.	0	0	0	0	24	28	24	28	0	0	./.	7	9	0	0	39	37	39	37	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792464424	6	62311324	CTTA	C	591	PASS	-	-	-	-	-	Del	-	D	62311324	62311330	3	36	536.884	-	-	1	1	1	-	-	./.	0	0	0	0	17	23	17	23	0	0	./.	5	5	7	6	34	28	34	28	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792465186	6	64084075	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	64084075	64084085	1	10	265.432	-	-	9	1	1	-	-	./.	0	0	0	0	31	27	31	28	0	0	./.	1	4	1	4	35	43	35	43	1	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792466700	6	67288946	GA	G	660	PASS	-	-	-	-	-	Del	-	D	67288946	67288951	1	40	590.572	-	-	4	1	1	-	-	./.	0	0	0	0	30	24	30	24	0	0	./.	4	7	8	8	45	34	45	34	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792467097	6	67930130	TC	T	660	PASS	-	-	-	-	-	Del	-	D	67930130	67930137	1	40	586.358	-	-	6	1	1	-	-	./.	0	0	0	0	24	24	24	24	0	0	./.	7	4	8	4	25	15	25	15	8	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792469316	6	73097302	GC	G	960	PASS	RIMS1	CCDS47449.1	r.?	-	-	Del	intronic	D	73097302	73097305	1	72	854.198	-	-	2	1	1	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RIMS1|CCDS47449.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	35	22	35	22	0	0	./.	11	5	12	6	38	21	38	21	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792471402	6	77650930	C	CA	720	PASS	-	-	-	-	-	Ins	-	I	77650930	77650937	1	48	634.026	-	-	6	1	1	-	-	./.	0	0	0	0	31	30	31	30	0	0	./.	7	5	12	6	32	35	33	35	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792471834	6	78725103	A	AC	960	PASS	-	-	-	-	-	Ins	-	I	78725103	78725105	1	72	840.952	-	-	1	1	1	-	-	./.	0	0	0	0	32	33	32	33	0	0	./.	5	11	6	13	27	40	29	40	6	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792475192	6	86901066	T	TA	1020	PASS	-	-	-	-	-	Ins	-	I	86901066	86901072	1	90	902.468	-	-	5	1	1	-	-	./.	0	0	0	0	23	35	23	36	0	0	./.	8	9	10	10	34	44	34	45	10	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792477618	6	92329142	GTA	G	420	PASS	-	-	-	-	-	Del	-	D	92329142	92329157	2	14	375.819	-	-	7	1	-	-	-	./.	0	0	0	0	27	31	27	31	0	0	./.	1	6	1	6	33	42	33	42	1	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792479511	6	97145074	G	GA	900	PASS	AL132776.1	ENST00000500007	r.?	-	-	Ins	upstream	I	97145074	97145081	1	70	795.091	-	-	6	1	1	AL132776.1|ENST00000500007|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	AL132776.1|ENST00000500007|r.?|-|-|non_protein_coding:insertion:5KB_upstream_variant|SO:0000011:SO:0000667:SO:0001635	./.	0	0	0	0	35	30	35	30	0	0	./.	6	9	10	12	42	39	43	39	10	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792484288	6	107893083	TAAAG	T	1016	PASS	SOBP	CCDS43488.1	r.?	-	-	Del	intronic	D	107893083	107893091	4	110	1020.08	-	-	1	1	1	SOBP|CCDS43488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SOBP|CCDS43488.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	13	25	13	0	0	./.	10	9	13	10	48	30	48	30	13	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792486917	6	113394247	TATAC	T	509	PASS	-	-	-	-	-	Del	-	D	113394247	113394253	4	30	483.195	-	-	1	1	1	-	-	./.	0	0	0	0	30	37	30	37	0	0	./.	5	4	9	9	41	37	41	37	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792487615	6	114814469	G	GT	1140	PASS	-	-	-	-	-	Ins	-	I	114814469	114814471	1	80	1006.83	-	-	1	1	1	-	-	./.	0	0	0	0	33	24	34	24	0	0	./.	15	4	16	6	43	36	44	36	16	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792488250	6	116550954	T	TCC	540	PASS	NT5DC1	CCDS5104.1	r.?	-	-	Ins	intronic	I	116550954	116550957	2	30	471.154	-	-	2	1	-	NT5DC1|CCDS5104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NT5DC1|CCDS5104.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	19	24	19	24	0	0	./.	4	5	6	6	42	27	42	29	6	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792488544	6	117196168	AT	A	629	PASS	RFX6	CCDS5113.1	r.?	-	-	Del	upstream	D	117196168	117196174	1	40	590.572	-	-	5	1	1	RFX6|CCDS5113.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	RFX6|CCDS5113.1|r.?|-|-|protein_coding:deletion:5KB_upstream_variant|SO:0000010:SO:0000159:SO:0001635	./.	0	0	0	0	25	31	25	31	0	0	./.	7	4	9	13	39	50	39	50	9	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792488548	6	117199380	GC	G	720	PASS	RFX6	CCDS5113.1	r.?	-	-	Del	intronic	D	117199380	117199382	1	49	644.261	-	-	1	1	1	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	22	30	22	0	0	./.	6	6	9	10	41	43	42	43	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792488549	6	117199455	GT	G	598	PASS	RFX6	CCDS5113.1	r.?	-	-	Del	intronic	D	117199455	117199461	1	36	590.572	-	-	5	1	1	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	RFX6|CCDS5113.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	33	24	33	0	0	./.	8	3	10	6	31	32	31	32	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792490301	6	121315903	CCCTCATTG	C	348	PASS	-	-	-	-	-	Del	-	D	121315903	121315918	8	48	644.261	-	-	1	1	1	-	-	./.	0	0	0	0	34	25	34	25	0	0	./.	5	7	7	10	25	29	25	29	7	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792493626	6	129771017	AGCTC	A	660	PASS	LAMA2	CCDS5138.1	r.?	-	-	Del	intronic	D	129771017	129771022	4	40	584.552	-	-	1	1	1	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	LAMA2|CCDS5138.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	19	23	19	0	0	./.	4	7	7	8	34	21	34	21	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792495490	6	134079777	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	134079777	134079786	1	12	265.432	-	-	8	1	1	-	-	./.	0	0	0	0	24	14	24	14	0	0	./.	3	2	4	3	44	44	45	44	4	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792496364	6	135803229	GGTGTATTGTTTCCACACAGTCTACAAAGTTTT	G	580	PASS	AHI1	CCDS47483.1	r.?	-	-	Del	intronic	D	135803229	135803262	32	117	1073.17	-	-	1	1	1	AHI1|CCDS47483.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	AHI1|CCDS47483.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	26	23	26	0	0	./.	8	12	7	7	36	36	37	41	8	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792497224	6	137773776	ATAGCGTTTG	A	406	PASS	-	-	-	-	-	Del	-	D	137773776	137773786	9	55	751.637	-	-	1	1	1	-	-	./.	0	0	0	0	37	32	37	32	0	0	./.	10	4	11	7	45	41	45	41	11	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792498742	6	140980691	AAGTAGTATAAT	A	522	PASS	-	-	-	-	-	Del	-	D	140980691	140980705	11	100	966.391	-	-	1	1	1	-	-	./.	0	0	0	0	31	20	31	20	0	0	./.	9	9	11	10	38	35	38	35	11	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792502176	6	149559550	CTGGGGTTCCAAATCG	C	319	PASS	-	-	-	-	-	Del	-	D	149559550	149559566	15	36	589.97	-	-	1	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	8	3	8	3	37	24	37	24	8	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792505236	6	155368846	AGAGAGAGAGAGAGC	A	260	PASS	-	-	-	-	-	Del	-	D	155368846	155368874	14	15	322.13	-	-	1	1	-	-	-	./.	0	0	0	0	14	12	14	12	0	0	./.	2	4	0	0	21	14	21	14	2	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792506282	6	157967951	AGCTGAAATGTGAGCTTTGGCTCCCAAAGCAAGGCTAGTGATTTAGGAAGCGCCTCTTCC	A	406	PASS	ZDHHC14	CCDS5252.1	r.?	-	-	Del	intronic	D	157967951	157968011	59	63	745.617	-	-	1	1	1	ZDHHC14|CCDS5252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZDHHC14|CCDS5252.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	30	24	30	0	0	./.	6	8	0	0	26	17	32	25	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792507874	6	160760855	TG	T	937	PASS	-	-	-	-	-	Del	-	D	160760855	160760857	1	77	859.014	-	-	1	1	1	-	-	./.	0	0	0	0	30	25	30	25	0	0	./.	10	6	12	6	38	35	38	35	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792508352	6	161863860	GTAACAACTAAACATAACAT	G	261	PASS	PARK2	CCDS5281.1	r.?	-	-	Del	intronic	D	161863860	161863881	19	24	483.195	-	-	1	1	1	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	PARK2|CCDS5281.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	31	22	31	0	0	./.	7	2	7	4	24	28	25	28	8	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792509840	6	165082466	AT	A	600	PASS	ENSG00000237744	ENST00000425920	r.?	-	-	Del	intronic	D	165082466	165082471	1	35	536.884	-	-	4	1	1	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000237744|ENST00000425920|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	31	28	31	0	0	./.	6	4	9	8	35	34	35	34	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792514028	7	3807402	TG	T	720	PASS	SDK1	CCDS34590.1	r.?	-	-	Del	intronic	D	3807402	3807404	1	45	643.282	-	-	1	1	1	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SDK1|CCDS34590.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	32	23	32	0	0	./.	4	8	7	11	40	41	40	41	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792518534	7	12219730	TA	T	1080	PASS	-	-	-	-	-	Del	-	D	12219730	12219732	1	99	966.729	-	-	1	1	1	-	-	./.	0	0	0	0	20	29	20	29	0	0	./.	10	8	11	12	38	40	38	40	11	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792520660	7	16683879	AG	A	1049	PASS	ANKMY2	CCDS5361.1	r.?	-	-	Del	intronic	D	16683879	16683881	1	100	966.127	-	-	1	1	1	ANKMY2|CCDS5361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANKMY2|CCDS5361.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	23	25	23	25	0	0	./.	9	9	11	13	36	41	36	41	11	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792522690	7	21384203	CCTCTTTGCCTGGGTAT	C	261	PASS	-	-	-	-	-	Del	-	D	21384203	21384221	16	30	483.364	-	-	1	1	1	-	-	./.	0	0	0	0	25	26	25	26	0	0	./.	5	4	4	4	29	24	30	24	5	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792524402	7	24751734	AGAATGG	A	435	PASS	DFNA5	CCDS5389.1	r.?	-	-	Del	intronic	D	24751734	24751741	6	72	805.607	-	-	1	1	1	DFNA5|CCDS5389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DFNA5|CCDS5389.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	25	25	25	0	0	./.	8	7	13	8	45	30	45	30	13	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792524599	7	25166758	TTGATTATTAAA	T	435	PASS	CYCS	CCDS5393.1	r.?	-	-	Del	upstream	D	25166758	25166772	11	70	805.607	-	-	1	1	1	CYCS|CCDS5393.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	CYCS|CCDS5393.1|r.?|-|-|protein_coding:deletion:2KB_upstream_variant|SO:0000010:SO:0000159:SO:0001636	./.	0	0	0	0	29	25	29	25	0	0	./.	9	6	10	6	56	55	56	55	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792525108	7	26420762	A	AT	629	PASS	-	-	-	-	-	Ins	-	I	26420762	26420771	1	42	582.952	-	-	8	1	1	-	-	./.	0	0	0	0	29	26	29	26	0	0	./.	5	6	4	7	30	26	31	26	5	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792525268	7	26845492	CT	C	480	PASS	SKAP2	CCDS5400.1	r.?	-	-	Del	intronic	D	26845492	26845495	1	21	429.657	-	-	2	1	1	SKAP2|CCDS5400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SKAP2|CCDS5400.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	23	30	23	0	0	./.	6	2	8	6	36	22	36	22	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792525383	7	27077551	CT	C	1200	PASS	-	-	-	-	-	Del	-	D	27077551	27077555	1	120	1127.85	-	-	3	1	1	-	-	./.	0	0	0	0	25	23	25	23	0	0	./.	14	7	16	9	55	30	55	30	16	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792526959	7	30328523	CG	C	800	PASS	ZNRF2	CCDS5426.1	r.?	-	-	Del	intronic	D	30328523	30328525	1	70	798.985	-	-	1	1	1	ZNRF2|CCDS5426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZNRF2|CCDS5426.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	41	24	41	24	0	0	./.	9	6	10	11	39	46	39	46	10	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792528541	7	34092563	AG	A	300	PASS	BMPER	CCDS5442.1	r.?	-	-	Del	intronic	D	34092563	34092565	1	12	268.536	-	-	1	1	1	BMPER|CCDS5442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	BMPER|CCDS5442.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	21	25	21	0	0	./.	2	3	4	5	29	25	29	25	4	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792528653	7	34517625	AG	A	1020	PASS	-	-	-	-	-	Del	-	D	34517625	34517627	1	84	913.022	-	-	1	1	1	-	-	./.	0	0	0	0	20	29	20	29	0	0	./.	11	6	12	11	32	37	32	37	12	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792528737	7	34735707	A	AC	300	PASS	NPSR1	CCDS5444.1	r.?	-	-	Ins	intronic	I	34735707	34735708	1	12	260.709	-	-	0	1	-	NPSR1|CCDS5444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	NPSR1|CCDS5444.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	21	25	21	0	0	./.	3	2	6	4	44	30	44	30	6	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792530722	7	39251918	TTATG	T	267	PASS	POU6F2	CCDS34620.2	r.?	-	-	Del	intronic	D	39251918	39251923	4	7	322.243	-	-	1	1	1	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	POU6F2|CCDS34620.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	35	27	35	27	0	0	./.	6	0	8	1	30	23	30	23	8	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792531322	7	40228907	CT	C	600	PASS	C7orf10	ENST00000309930	r.?	-	-	Del	intronic	D	40228907	40228909	1	20	532.255	-	-	1	1	1	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	C7orf10|ENST00000309930|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	14	36	14	36	0	0	./.	1	9	5	14	20	49	20	49	5	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792532230	7	42430729	TGAATCAGAAACTCTAGG	T	435	PASS	-	-	-	-	-	Del	-	D	42430729	42430749	17	52	805.607	-	-	1	1	1	-	-	./.	0	0	0	0	19	12	19	12	0	0	./.	3	12	5	12	25	29	25	29	5	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792533318	7	44694838	TC	T	569	PASS	OGDH	CCDS34627.1	r.?	-	-	Del	intronic	D	44694838	44694840	1	36	535.867	-	-	1	1	1	OGDH|CCDS34627.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OGDH|CCDS34627.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	18	32	18	32	0	0	./.	5	5	8	7	22	47	22	47	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792534671	7	47769931	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	47769931	47769941	1	10	265.525	-	-	9	1	1	-	-	./.	0	0	0	0	33	28	33	28	0	0	./.	4	1	4	1	46	38	46	39	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792536426	7	52032271	CT	C	720	PASS	-	-	-	-	-	Del	-	D	52032271	52032274	1	48	644.486	-	-	2	1	1	-	-	./.	0	0	0	0	24	34	24	34	0	0	./.	5	7	6	9	32	38	32	38	6	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792540973	7	61840375	CTTAC	CAG	668	PASS	-	-	-	-	-	Complex	-	DI	61840376	61840379	4	63	0	-	-	0	1	1	-	-	./.	0	0	0	0	20	27	20	27	0	0	./.	6	8	0	0	28	44	28	44	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792541252	7	62099497	GT	G	514	PASS	-	-	-	-	-	Del	-	D	62099497	62099507	1	35	537.072	-	-	9	1	1	-	-	./.	0	0	0	0	26	25	26	25	0	0	./.	6	4	9	8	36	40	36	40	9	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792541515	7	62927130	TTCAAAA	T	344	PASS	-	-	-	-	-	Del	-	D	62927130	62927138	6	60	751.9	-	-	1	1	1	-	-	./.	0	0	0	0	28	12	28	12	0	0	./.	9	5	10	6	32	24	32	24	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792542143	7	64036972	TTAAG	TTG	644	PASS	-	-	-	-	-	Complex	-	DI	64036973	64036976	4	48	0	-	-	0	1	1	-	-	./.	0	0	0	0	8	30	8	30	0	0	./.	5	7	0	0	15	35	15	35	5	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792550275	7	76539741	GT	G	845	PASS	-	-	-	-	-	Del	-	D	76539741	76539747	1	70	804.403	-	-	5	1	1	-	-	./.	0	0	0	0	27	28	27	28	0	0	./.	6	9	13	14	38	50	38	50	13	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792552500	7	81155054	CT	C	840	PASS	-	-	-	-	-	Del	-	D	81155054	81155060	1	60	751.9	-	-	5	1	1	-	-	./.	0	0	0	0	40	22	40	22	0	0	./.	5	9	6	10	32	44	32	44	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792552948	7	82165150	GT	G	1138	PASS	-	-	-	-	-	Del	-	D	82165150	82165153	1	96	1074.14	-	-	2	1	1	-	-	./.	0	0	0	0	24	17	24	17	0	0	./.	15	5	18	7	40	23	40	23	18	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792554919	7	86946699	AG	A	1200	PASS	-	-	-	-	-	Del	-	D	86946699	86946701	1	112	1070.53	-	-	1	1	1	-	-	./.	0	0	0	0	15	22	15	22	0	0	./.	7	13	9	14	24	36	24	36	9	14	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792556005	7	89561590	TAAG	T	898	PASS	-	-	-	-	-	Del	-	D	89561590	89561596	3	77	859.315	-	-	1	1	1	-	-	./.	0	0	0	0	31	29	31	29	0	0	./.	6	10	8	11	43	36	43	36	8	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792558914	7	96734479	CA	C	538	PASS	-	-	-	-	-	Del	-	D	96734479	96734482	1	32	502.152	-	-	2	1	1	-	-	./.	0	0	0	0	23	18	23	18	0	0	./.	7	3	14	4	47	17	47	17	14	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792562244	7	101837148	CGTCCGAGGGCGCT	C	290	PASS	CUX1	CCDS5721.1	r.1142_1154delGUCCGAGGGCGCU	c.1104_1116delGTCCGAGGGCGCT	p.S369fs*34	Del	frameshift	D	101837148	101837163	13	27	537.072	-	-	1	1	1	CUX1|CCDS5721.1|r.1142_1154delGUCCGAGGGCGCU|c.1104_1116delGTCCGAGGGCGCT|p.S369fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	CUX1|CCDS5721.1|r.1142_1154delGUCCGAGGGCGCU|c.1104_1116delGTCCGAGGGCGCT|p.S369fs*34|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	29	18	29	18	0	0	./.	8	2	8	3	49	21	49	21	8	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792563705	7	104745872	TTTC	T	412	PASS	MLL5	CCDS34723.1	r.?	-	-	Del	intronic	D	104745872	104745878	3	36	590.779	-	-	1	1	1	MLL5|CCDS34723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLL5|CCDS34723.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	23	32	23	0	0	./.	8	3	0	0	36	25	36	25	8	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792566462	7	110997957	GAA	G	660	PASS	IMMP2L	CCDS5753.1	r.?	-	-	Del	intronic	D	110997957	110997960	2	42	590.779	-	-	2	1	1	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IMMP2L|CCDS5753.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	35	32	35	0	0	./.	6	5	10	7	31	25	31	25	10	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792566585	7	111317129	ACATGGAG	A	406	PASS	-	-	-	-	-	Del	-	D	111317129	111317137	7	63	750.094	-	-	1	1	1	-	-	./.	0	0	0	0	20	25	20	25	0	0	./.	8	6	9	9	35	30	35	30	9	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792569533	7	118734256	ATTT	A	867	PASS	-	-	-	-	-	Del	-	D	118734256	118734261	3	80	859.315	-	-	4	1	1	-	-	./.	0	0	0	0	37	22	37	22	0	0	./.	9	7	11	9	36	34	36	34	11	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792571548	7	123710492	C	CA	449	PASS	-	-	-	-	-	Ins	-	I	123710492	123710494	1	24	420.024	-	-	1	1	1	-	-	./.	0	0	0	0	29	32	29	32	0	0	./.	3	5	6	5	32	34	32	34	6	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792572931	7	126832581	GTTTGTGCT	G	319	PASS	GRM8	CCDS5794.1	r.?	-	-	Del	intronic	D	126832581	126832592	8	42	590.779	-	-	1	1	1	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	GRM8|CCDS5794.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	19	24	19	24	0	0	./.	6	5	10	5	30	31	30	31	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792573385	7	127976032	CTCTTCCTCTCTGCCCT	C	406	PASS	RBM28	CCDS5801.1	r.777_792del16	c.662_677del16	p.K221fs*32	Del	frameshift	D	127976032	127976053	16	63	751.9	-	-	1	1	1	RBM28|CCDS5801.1|r.777_792del16|c.662_677del16|p.K221fs*32|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	RBM28|CCDS5801.1|r.777_792del16|c.662_677del16|p.K221fs*32|protein_coding:CDS:exon:deletion:frameshift_variant|SO:0000010:SO:0000316:SO:0000147:SO:0000159:SO:0001589	./.	0	0	0	0	24	26	24	29	0	0	./.	6	8	6	8	28	33	28	33	6	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792576054	7	132411768	CT	C	360	PASS	ENSG00000183470	ENST00000332558	r.?	-	-	Del	intronic	D	132411768	132411770	1	15	321.039	-	-	1	1	1	ENSG00000183470|ENST00000332558|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000183470|ENST00000332558|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	19	20	19	0	0	./.	4	2	8	4	36	24	36	24	8	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792576563	7	133510365	TC	T	840	PASS	EXOC4	CCDS5829.1	r.?	-	-	Del	intronic	D	133510365	133510369	1	60	751.9	-	-	3	1	1	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	EXOC4|CCDS5829.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	20	26	20	26	0	0	./.	9	5	12	10	52	47	52	47	12	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792577761	7	135945761	CATT	C	629	PASS	-	-	-	-	-	Del	-	D	135945761	135945769	3	40	590.779	-	-	2	1	1	-	-	./.	0	0	0	0	27	18	27	18	0	0	./.	4	7	7	9	40	32	40	32	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792581460	7	143202135	C	CTG	840	PASS	-	-	-	-	-	Ins	-	I	143202135	143202138	2	60	735.043	-	-	1	1	1	-	-	./.	0	0	0	0	29	21	29	21	0	0	./.	5	9	7	11	32	37	33	37	7	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792582405	7	146051837	T	TA	629	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Ins	intronic	I	146051837	146051840	1	42	584.156	-	-	2	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	27	27	28	29	0	0	./.	5	6	8	8	32	28	32	28	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792582965	7	147457349	AG	A	300	PASS	CNTNAP2	CCDS5889.1	r.?	-	-	Del	intronic	D	147457349	147457351	1	12	257.097	-	-	1	1	1	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTNAP2|CCDS5889.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	25	32	25	32	0	0	./.	3	2	4	3	37	36	37	36	4	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792583428	7	148270571	T	TA	480	PASS	-	-	-	-	-	Ins	-	I	148270571	148270581	1	24	423.035	-	-	9	1	1	-	-	./.	0	0	0	0	21	29	21	30	0	0	./.	3	5	7	9	40	34	40	34	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792585920	7	152313767	A	AT	300	PASS	-	-	-	-	-	Ins	-	I	152313767	152313768	1	6	265.525	-	-	0	1	1	-	-	./.	0	0	0	0	22	30	22	30	0	0	./.	0	5	1	5	34	52	35	53	1	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792586205	7	152721533	CCT	C	300	PASS	-	-	-	-	-	Del	-	D	152721533	152721547	2	6	268.536	-	-	6	1	1	-	-	./.	0	0	0	0	33	18	33	18	0	0	./.	5	0	5	0	35	20	35	20	5	0	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792586469	7	153290789	CA	C	780	PASS	-	-	-	-	-	Del	-	D	153290789	153290794	1	56	696.387	-	-	4	1	1	-	-	./.	0	0	0	0	40	22	40	22	0	0	./.	6	7	6	11	34	31	34	31	6	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792586920	7	154400955	ACAG	A	598	PASS	DPP6	ENST00000404039	r.?	-	-	Del	intronic	D	154400955	154400961	3	36	589.575	-	-	1	1	1	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	DPP6|ENST00000404039|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	34	23	34	23	0	0	./.	8	3	10	5	34	27	34	27	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792591338	8	4546992	G	GA	660	PASS	-	-	-	-	-	Ins	-	I	4546992	4546999	1	36	585.068	-	-	6	1	1	-	-	./.	0	0	0	0	28	39	30	39	0	0	./.	3	8	5	10	36	38	37	38	5	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792591442	8	4768871	A	AT	360	PASS	-	-	-	-	-	Ins	-	I	4768871	4768877	1	7	319.128	-	-	5	1	1	-	-	./.	0	0	0	0	35	20	35	20	0	0	./.	6	0	8	5	29	23	29	23	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792604126	8	30385396	G	GATAGGTTT	261	PASS	RBPMS	CCDS6077.1	r.?	-	-	Ins	intronic	I	30385396	30385406	8	30	429.323	-	-	1	1	1	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	RBPMS|CCDS6077.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	26	19	26	19	0	0	./.	5	4	5	4	28	29	28	29	5	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792604967	8	31901720	TAAAGATGACATTA	T	290	PASS	NRG1	CCDS47836.1	r.?	-	-	Del	intronic	D	31901720	31901736	13	35	537.901	-	-	1	1	1	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	NRG1|CCDS47836.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	28	30	28	0	0	./.	6	4	8	6	43	40	43	40	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792606753	8	36237908	T	TA	960	PASS	-	-	-	-	-	Ins	-	I	36237908	36237916	1	77	851.008	-	-	7	1	1	-	-	./.	0	0	0	0	34	34	34	34	0	0	./.	10	6	14	8	55	35	55	35	14	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792607125	8	37262632	GA	G	1140	PASS	-	-	-	-	-	Del	-	D	37262632	37262637	1	110	1020.81	-	-	4	1	1	-	-	./.	0	0	0	0	21	27	21	27	0	0	./.	9	10	11	15	44	50	44	50	11	15	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792608791	8	40376657	TCACAG	T	873	PASS	-	-	-	-	-	Del	-	D	40376657	40376663	5	132	1127.79	-	-	1	1	1	-	-	./.	0	0	0	0	27	34	27	34	0	0	./.	11	10	11	11	37	41	38	41	12	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792609982	8	42661646	G	GT	300	PASS	-	-	-	-	-	Ins	-	I	42661646	42661656	1	12	257.511	-	-	9	1	1	-	-	./.	0	0	0	0	19	33	19	34	0	0	./.	3	2	3	2	33	58	33	59	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792611354	8	49140549	GAGTTCCT	GAA	464	PASS	-	-	-	-	-	Complex	-	DI	49140550	49140556	7	77	0	-	-	0	1	1	-	-	./.	0	0	0	0	30	27	30	27	0	0	./.	10	6	0	0	37	41	37	41	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792612187	8	51672220	GAT	G	300	PASS	SNTG1	CCDS6147.1	r.?	-	-	Del	intronic	D	51672220	51672235	2	12	268.95	-	-	7	1	1	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SNTG1|CCDS6147.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	30	35	30	35	0	0	./.	2	3	2	3	30	56	30	56	2	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792612840	8	52960087	AAG	A	540	PASS	-	-	-	-	-	Del	-	D	52960087	52960091	2	30	482.305	-	-	1	1	1	-	-	./.	0	0	0	0	44	27	44	27	0	0	./.	5	4	12	5	49	27	49	27	12	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792613210	8	53825936	G	GA	420	PASS	-	-	-	-	-	Ins	-	I	53825936	53825939	1	18	372.316	-	-	2	1	1	-	-	./.	0	0	0	0	23	16	23	17	0	0	./.	5	2	8	4	39	22	39	22	8	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792614372	8	56188936	GAAAGTTGAATGCCTTTCTAACTCCCTTTGCTCAAGTAGTCGCTGTC	G	406	PASS	XKR4	CCDS34893.1	r.?	-	-	Del	intronic	D	56188936	56188985	46	63	753.061	-	-	1	1	1	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	XKR4|CCDS34893.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	32	25	32	25	0	0	./.	8	6	3	1	30	21	35	26	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792616480	8	61586706	T	TAA	569	PASS	CHD7	CCDS47865.1	r.?	-	-	Ins	upstream	I	61586706	61586710	2	35	525.86	-	-	3	1	1	CHD7|CCDS47865.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	CHD7|CCDS47865.1|r.?|-|-|protein_coding:insertion:5KB_upstream_variant|SO:0000010:SO:0000667:SO:0001635	./.	0	0	0	0	39	20	40	20	0	0	./.	4	6	10	11	36	45	36	47	11	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792617886	8	65285764	CAG	C	360	PASS	-	-	-	-	-	Del	-	D	65285764	65285780	2	16	319.73	-	-	7	1	1	-	-	./.	0	0	0	0	20	22	20	22	0	0	./.	3	3	3	3	33	31	33	31	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792620490	8	71144365	TCCTAGC	T	290	PASS	NCOA2	CCDS47872.1	r.?	-	-	Del	intronic	D	71144365	71144372	6	35	537.901	-	-	1	1	1	NCOA2|CCDS47872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	NCOA2|CCDS47872.1|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	17	28	17	0	0	./.	6	4	8	5	36	24	36	24	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792624497	8	80880583	AC	A	720	PASS	MRPS28	CCDS6226.1	r.?	-	-	Del	intronic	D	80880583	80880586	1	40	645.481	-	-	2	1	1	MRPS28|CCDS6226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MRPS28|CCDS6226.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	21	29	21	29	0	0	./.	3	9	4	13	23	40	23	40	4	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792625875	8	84062670	AAAC	A	749	PASS	-	-	-	-	-	Del	-	D	84062670	84062676	3	50	698.067	-	-	1	1	1	-	-	./.	0	0	0	0	28	22	28	22	0	0	./.	4	9	4	9	22	33	22	33	4	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792627211	8	87577535	CTTTA	C	987	PASS	CPNE3	CCDS6243.1	r.?	-	-	Del	downstream	D	87577535	87577542	4	99	966.415	-	-	1	1	1	CPNE3|CCDS6243.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	CPNE3|CCDS6243.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	33	35	33	35	0	0	./.	10	8	14	8	35	39	35	39	14	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792632604	8	100297210	GTATT	G	749	PASS	VPS13B	CCDS6280.1	r.?	-	-	Del	intronic	D	100297210	100297215	4	54	696.863	-	-	1	1	1	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	VPS13B|CCDS6280.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	28	27	28	27	0	0	./.	8	5	11	6	41	33	41	33	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792635409	8	106502474	C	CA	292	PASS	ZFPM2	CCDS47908.1	r.?	-	-	Ins	intronic	I	106502474	106502484	1	12	264.134	-	-	9	1	1	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	ZFPM2|CCDS47908.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	28	35	28	36	0	0	./.	2	3	3	3	52	53	52	53	3	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792635838	8	107560814	ATAAG	A	718	PASS	OXR1	CCDS47909.1	r.?	-	-	Del	intronic	D	107560814	107560823	4	56	699.271	-	-	2	1	1	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	OXR1|CCDS47909.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	37	26	37	0	0	./.	7	6	7	6	33	35	33	35	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792636275	8	108481949	TC	T	780	PASS	ANGPT1	CCDS6306.1	r.?	-	-	Del	intronic	D	108481949	108481953	1	50	699.271	-	-	3	1	1	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ANGPT1|CCDS6306.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	31	27	31	27	0	0	./.	4	9	11	13	42	32	42	32	11	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792637357	8	111299779	TTTTA	T	509	PASS	-	-	-	-	-	Del	-	D	111299779	111299786	4	24	483.509	-	-	1	1	1	-	-	./.	0	0	0	0	27	27	27	27	0	0	./.	2	7	3	10	17	38	17	38	3	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792640269	8	118657909	TCTATGA	T	348	PASS	-	-	-	-	-	Del	-	D	118657909	118657916	6	40	640.062	-	-	1	1	1	-	-	./.	0	0	0	0	25	25	25	25	0	0	./.	9	3	12	4	32	24	32	24	12	4	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792640603	8	119320239	TC	T	420	PASS	SAMD12	CCDS47913.1	r.?	-	-	Del	intronic	D	119320239	119320241	1	14	376.531	-	-	1	1	1	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	SAMD12|CCDS47913.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	24	19	24	19	0	0	./.	1	6	4	6	29	28	29	28	4	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792642301	8	123273655	AG	A	569	PASS	-	-	-	-	-	Del	-	D	123273655	123273657	1	32	537.299	-	-	1	1	1	-	-	./.	0	0	0	0	27	23	27	23	0	0	./.	7	3	10	6	50	33	50	33	10	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792644046	8	126756658	AG	A	600	PASS	-	-	-	-	-	Del	-	D	126756658	126756663	1	32	537.299	-	-	4	1	1	-	-	./.	0	0	0	0	25	19	25	19	0	0	./.	7	3	9	5	40	27	40	27	9	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792644585	8	128080152	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	128080152	128080159	1	36	531.88	-	-	6	1	1	-	-	./.	0	0	0	0	16	26	16	27	0	0	./.	5	5	7	9	31	46	32	48	7	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792645870	8	131064660	A	AT	300	PASS	ASAP1	CCDS6362.1	r.5734_5735insa	c.?	p.?	Ins	3'UTR variant	I	131064660	131064670	1	12	265.94	-	-	9	1	1	ASAP1|CCDS6362.1|r.5734_5735insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	ASAP1|CCDS6362.1|r.5734_5735insa|c.?|p.?|protein_coding:three_prime_UTR:exon:insertion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000667:SO:0001624:SO:0001576	./.	0	0	0	0	30	26	31	26	0	0	./.	3	2	3	2	53	40	53	40	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792647818	8	136435073	A	AAAC	840	PASS	-	-	-	-	-	Ins	-	I	136435073	136435091	3	63	727.775	-	-	5	1	1	-	-	./.	0	0	0	0	38	33	38	34	0	0	./.	6	8	9	11	42	36	43	36	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792651352	8	144893671	C	CT	840	PASS	SCRIB	CCDS6412.1	r.?	-	-	Ins	intronic	I	144893671	144893673	1	60	743.428	-	-	1	1	1	SCRIB|CCDS6412.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SCRIB|CCDS6412.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	20	24	20	25	0	0	./.	9	5	13	8	35	23	35	23	13	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792654629	9	5898932	TC	T	480	PASS	MLANA	CCDS6466.1	r.?	-	-	Del	intronic	D	5898932	5898934	1	25	431.003	-	-	1	1	1	MLANA|CCDS6466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	MLANA|CCDS6466.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	26	26	26	26	0	0	./.	4	4	8	9	25	34	25	34	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792658055	9	13378960	A	AT	600	PASS	-	-	-	-	-	Ins	-	I	13378960	13378961	1	27	532.734	-	-	0	1	1	-	-	./.	0	0	0	0	16	35	16	35	0	0	./.	2	8	2	8	29	34	29	34	2	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792658216	9	13757046	CG	C	1409	PASS	-	-	-	-	-	Del	-	D	13757046	13757048	1	168	1287.59	-	-	1	1	1	-	-	./.	0	0	0	0	22	26	22	26	0	0	./.	11	13	11	16	40	40	40	40	11	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792660059	9	17415691	AT	A	720	PASS	CNTLN	CCDS43789.1	r.?	-	-	Del	intronic	D	17415691	17415694	1	45	645.903	-	-	2	1	1	CNTLN|CCDS43789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	CNTLN|CCDS43789.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	24	29	24	0	0	./.	4	8	8	13	36	39	36	39	8	13	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792662029	9	22087794	AG	A	720	PASS	-	-	-	-	-	Del	-	D	22087794	22087796	1	48	646.505	-	-	1	1	1	-	-	./.	0	0	0	0	24	16	24	16	0	0	./.	5	7	7	12	30	39	30	39	7	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792662349	9	22881444	AC	A	749	PASS	-	-	-	-	-	Del	-	D	22881444	22881446	1	50	700.381	-	-	1	1	1	-	-	./.	0	0	0	0	20	40	20	40	0	0	./.	4	9	5	9	29	42	29	42	5	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792662595	9	23488260	A	ATT	360	PASS	-	-	-	-	-	Ins	-	I	23488260	23488265	2	7	316.028	-	-	4	1	1	-	-	./.	0	0	0	0	27	37	28	37	0	0	./.	6	0	11	6	36	35	38	36	11	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792662596	9	23488265	C	CTT	269	PASS	-	-	-	-	-	Ins	-	I	23488265	23488272	2	6	263.357	-	-	6	1	1	-	-	./.	0	0	0	0	26	36	26	36	0	0	./.	0	5	0	1	37	38	37	39	0	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792663295	9	25540855	T	TTCTCAAAATA	551	PASS	-	-	-	-	-	Ins	-	I	25540855	25540856	10	104	907.436	-	-	0	1	1	-	-	./.	0	0	0	0	22	23	22	23	0	0	./.	7	12	6	8	39	44	41	50	7	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792668987	9	37171519	ATCC	A	629	PASS	ZCCHC7	CCDS6608.2	r.?	-	-	Del	intronic	D	37171519	37171529	3	40	592.63	-	-	3	1	1	ZCCHC7|CCDS6608.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ZCCHC7|CCDS6608.2|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	27	29	27	0	0	./.	4	7	8	7	36	28	36	28	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792672761	9	68193959	AC	A	452	PASS	-	-	-	-	-	Del	-	D	68193959	68193962	1	35	538.754	-	-	2	1	1	-	-	./.	0	0	0	0	28	21	28	21	0	0	./.	4	6	9	11	47	36	47	36	9	11	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792677683	9	76910526	TGACAGG	T	290	PASS	-	-	-	-	-	Del	-	D	76910526	76910533	6	36	538.754	-	-	1	1	1	-	-	./.	0	0	0	0	24	26	24	26	0	0	./.	5	5	7	5	22	14	22	14	7	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792679207	9	80762709	CACCTCAACAAATGG	C	348	PASS	-	-	-	-	-	Del	-	D	80762709	80762724	14	48	646.505	-	-	1	1	1	-	-	./.	0	0	0	0	23	34	23	34	0	0	./.	7	5	8	6	15	22	15	22	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792689059	9	107914761	AG	A	960	PASS	-	-	-	-	-	Del	-	D	107914761	107914764	1	77	858.394	-	-	2	1	1	-	-	./.	0	0	0	0	30	37	30	37	0	0	./.	10	6	10	8	26	18	26	18	10	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792689674	9	109463167	G	GT	720	PASS	-	-	-	-	-	Ins	-	I	109463167	109463169	1	48	639.28	-	-	1	1	1	-	-	./.	0	0	0	0	31	37	32	37	0	0	./.	5	7	7	12	22	30	23	30	7	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792690506	9	111669774	TATATTTA	T	319	PASS	IKBKAP	CCDS6773.1	r.?	-	-	Del	intronic	D	111669774	111669783	7	40	592.63	-	-	1	1	1	IKBKAP|CCDS6773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IKBKAP|CCDS6773.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	22	36	22	36	0	0	./.	7	4	8	5	32	39	32	39	8	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792692332	9	114983141	ACTC	A	840	PASS	ROD1	CCDS6784.1	r.?	-	-	Del	downstream	D	114983141	114983147	3	55	754.256	-	-	1	1	1	ROD1|CCDS6784.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	ROD1|ENST00000458258|r.4664_4666delGAG|c.?|p.?|protein_coding:three_prime_UTR:exon:deletion:3_prime_UTR_variant:transcript_variant|SO:0000010:SO:0000205:SO:0000147:SO:0000159:SO:0001624:SO:0001576	./.	0	0	0	0	17	21	17	21	0	0	./.	10	4	11	5	56	35	56	35	11	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792701729	9	133436544	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	133436544	133436554	1	12	266.367	-	-	9	1	1	-	-	./.	0	0	0	0	27	23	27	23	0	0	./.	3	2	3	2	40	52	40	53	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792705146	9	140733925	CT	C	687	PASS	EHMT1	ENST00000428019	r.?	-	-	Del	downstream	D	140733925	140733933	1	54	700.381	-	-	7	1	1	EHMT1|ENST00000428019|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	EHMT1|ENST00000428019|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	24	27	24	27	0	0	./.	5	8	9	10	32	41	32	41	9	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792711772	X	22560210	T	TC	1169	PASS	-	-	-	-	-	Ins	-	I	22560210	22560214	1	117	1066.04	-	-	3	1	1	-	-	./.	0	0	0	0	24	29	24	29	0	0	./.	8	12	12	16	24	41	24	41	12	16	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792713242	X	26563227	TA	T	989	PASS	-	-	-	-	-	Del	-	D	26563227	26563231	1	84	915.771	-	-	3	1	1	-	-	./.	0	0	0	0	26	30	26	30	0	0	./.	6	11	6	12	27	23	27	23	6	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792714184	X	29480359	AG	A	420	PASS	IL1RAPL1	CCDS14218.1	r.?	-	-	Del	intronic	D	29480359	29480361	1	18	377.33	-	-	1	1	1	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	IL1RAPL1|CCDS14218.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	29	24	29	24	0	0	./.	5	2	6	3	19	18	19	18	6	3	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792719820	X	47477757	CTCA	CT	956	PASS	SYN1	CCDS14280.1	r.?	-	-	Complex	intronic	DI	47477758	47477760	3	91	0	-	-	0	1	1	SYN1|CCDS14280.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	SYN1|CCDS14280.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	13	13	13	13	0	0	./.	12	6	0	0	23	26	23	26	12	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792723108	X	62754546	G	GA	300	PASS	-	-	-	-	-	Ins	-	I	62754546	62754556	1	10	264.103	-	-	9	1	1	-	-	./.	0	0	0	0	41	25	41	25	0	0	./.	4	1	4	1	51	37	52	37	4	1	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792723505	X	64632040	AG	A	480	PASS	-	-	-	-	-	Del	-	D	64632040	64632042	1	21	431.234	-	-	1	1	1	-	-	./.	0	0	0	0	23	23	23	23	0	0	./.	2	6	7	6	35	24	35	24	7	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792725079	X	69472665	G	GT	900	PASS	-	-	-	-	-	Ins	-	I	69472665	69472672	1	72	792.911	-	-	6	1	1	-	-	./.	0	0	0	0	43	22	43	22	0	0	./.	7	8	8	9	42	45	43	46	8	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792727099	X	74929399	G	GT	900	PASS	-	-	-	-	-	Ins	-	I	74929399	74929408	1	70	798.33	-	-	8	1	1	-	-	./.	0	0	0	0	22	27	23	29	0	0	./.	6	9	6	12	46	51	46	53	6	12	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792731378	X	88273146	AAATAT	A	381	PASS	-	-	-	-	-	Del	-	D	88273146	88273152	5	40	591.743	-	-	1	1	1	-	-	./.	0	0	0	0	21	25	21	25	0	0	./.	7	4	11	7	22	25	22	25	11	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792734680	X	97242424	T	TA	300	PASS	-	-	-	-	-	Ins	-	I	97242424	97242434	1	12	265.307	-	-	9	1	1	-	-	./.	0	0	0	0	36	23	36	23	0	0	./.	3	2	3	2	43	42	43	42	3	2	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792736176	X	101201089	AC	A	780	PASS	-	-	-	-	-	Del	-	D	101201089	101201092	1	54	700.154	-	-	2	1	1	-	-	./.	0	0	0	0	28	17	28	17	0	0	./.	8	5	10	5	31	29	31	29	10	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792736892	X	103554795	AAAAATTCCT	A	319	PASS	-	-	-	-	-	Del	-	D	103554795	103554806	9	42	592.947	-	-	1	1	1	-	-	./.	0	0	0	0	28	32	28	32	0	0	./.	5	6	5	7	26	31	26	31	5	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792738052	X	107626798	CGAATGCGAG	C	551	PASS	COL4A6	CCDS14542.1	r.?	-	-	Del	intronic	D	107626798	107626809	9	108	1024.18	-	-	1	1	1	COL4A6|CCDS14542.1|r.?|-|-|protein_coding:CDS:intron:deletion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000159:SO:0001627	ENSG00000189372|ENST00000453808|r.70-17_70-9delgaaugcgag|c.70-17_70-9delgaatgcgag|p.?|protein_coding:CDS:extended_intronic_splice_region:intron:deletion:extended_intronic_splice_region_variant:intron_variant:transcript_variant|SO:0000010:SO:0000316:SO:CGPX05:SO:0000188:SO:0000159:SO:CGPX04:SO:0001627:SO:0001576	./.	0	0	0	0	25	26	25	26	0	0	./.	11	8	11	9	35	36	35	36	11	9	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792738872	X	110175023	TG	T	660	PASS	-	-	-	-	-	Del	-	D	110175023	110175025	1	42	587.529	-	-	1	1	1	-	-	./.	0	0	0	0	20	33	20	33	0	0	./.	5	6	7	8	28	42	28	42	7	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792740757	X	115307451	TAGGAAAA	T	319	PASS	AGTR2	CCDS14569.1	r.?	-	-	Del	downstream	D	115307451	115307459	7	42	592.345	-	-	1	1	1	AGTR2|CCDS14569.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	AGTR2|CCDS14569.1|r.?|-|-|protein_coding:deletion:5KB_downstream_variant|SO:0000010:SO:0000159:SO:0001633	./.	0	0	0	0	15	18	15	18	0	0	./.	6	5	6	6	35	25	35	25	6	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792746026	X	127936592	ATGTGAAGCTTT	A	522	PASS	-	-	-	-	-	Del	-	D	127936592	127936605	11	96	967.869	-	-	1	1	1	-	-	./.	0	0	0	0	24	29	24	29	0	0	./.	11	7	12	7	35	36	36	36	13	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792746235	X	128654128	G	GTA	660	PASS	SMARCA1	CCDS14612.1	r.?	-	-	Ins	intronic	I	128654128	128654130	2	40	579.1	-	-	0	1	-	SMARCA1|CCDS14612.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	SMARCA1|CCDS14612.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	24	24	24	24	0	0	./.	7	4	8	8	38	42	38	42	8	8	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792748371	X	134520868	TC	T	323	PASS	-	-	-	-	-	Del	-	D	134520868	134520872	1	30	485.139	-	-	3	1	1	-	-	./.	0	0	0	0	17	15	17	15	0	0	./.	4	5	8	6	37	19	37	19	8	6	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792751394	X	142666897	TTGG	T	687	PASS	-	-	-	-	-	Del	-	D	142666897	142666902	3	54	700.756	-	-	1	1	1	-	-	./.	0	0	0	0	32	21	32	21	0	0	./.	5	8	6	10	24	37	24	37	6	10	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792753798	X	149574402	GCT	G	269	PASS	MAMLD1	CCDS14693.2	r.?	-	-	Del	intronic	D	149574402	149574418	2	6	257.48	-	-	7	1	1	MAMLD1|CCDS14693.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	MAMLD1|CCDS14693.2|r.?|-|-|protein_coding:five_prime_UTR:intron:deletion:intron_variant|SO:0000010:SO:0000204:SO:0000188:SO:0000159:SO:0001627	./.	0	0	0	0	17	16	17	16	0	0	./.	0	5	1	5	28	30	28	30	1	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792754417	X	151156652	TAGCAGACTAA	T	435	PASS	-	-	-	-	-	Del	-	D	151156652	151156663	10	72	808.565	-	-	1	1	1	-	-	./.	0	0	0	0	30	26	30	26	0	0	./.	8	7	8	7	29	24	29	24	8	7	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792755243	X	153739792	T	TG	420	PASS	FAM3A	CCDS35453.1	r.?	-	-	Ins	intronic	I	153739792	153739797	1	20	373.116	-	-	4	1	1	FAM3A|CCDS35453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	FAM3A|CCDS35453.1|r.?|-|-|protein_coding:CDS:intron:insertion:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:0000667:SO:0001627	./.	0	0	0	0	23	20	23	21	0	0	./.	4	3	5	5	20	33	20	33	5	5	1	1	1	1	1	1	1	1
2874350	PD14455a	PD14455b	2792755311	X	154070924	TATCAACTTTA	TGG	617	PASS	F8	CCDS35457.1	r.?	-	-	Complex	intronic	DI	154070925	154070934	10	132	0	-	-	0	1	1	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	F8|CCDS35457.1|r.?|-|-|protein_coding:CDS:intron:indel:intron_variant|SO:0000010:SO:0000316:SO:0000188:SO:1000032:SO:0001627	./.	0	0	0	0	27	27	27	27	0	0	./.	11	10	0	0	23	32	24	32	11	10	1	1	1	1	1	1	1	1