variant_id sample_id chr mut_start mut_stop 5_prime_flanking deleted_seq inserted_seq 3_prime_flanking mut_type gene_build default_gene gene_id ccds_id transcript_id cds_mut_syntax aa_mut_syntax current_conf_status validation_platform 67936580 PD3851a 6 45960536 45960537 TGTATATCTATTTAAGGGCTGTATG TA - TATATTTATGCCTTATATAAAAAGA deletion homo_sapiens_core_58_37c CLIC5 ENSG00000112782 CCDS47438.1 ENST00000185206 Somatic Capillary sequencing 67817057 PD3851a 4 179186746 179186746 TAAAGTAGCCACAAACAAATTAAAA G - TAAAAATTAAGTAAAATATATGCTT deletion Somatic Capillary sequencing 67607434 PD3851a 14 52111863 52111865 ACCACTACCTTGCCTGTAGAAAACT TTC - TTAATATTTTCTGGCATTTGGTTTC deletion homo_sapiens_core_58_37c FRMD6 ENSG00000139926 CCDS9704.1 ENST00000356218 Somatic Capillary sequencing 67775676 PD3851a 7 91835041 91835044 TCCAGCCTGGGTGACAGAGCAAGAC TCTG - TCTCAAAAAACAAAACAAAATGAAA deletion homo_sapiens_core_58_37c KRIT1 ENSG00000001631 CCDS5624.1 ENST00000394507 Somatic Capillary sequencing 68175024 PD3851a 12 59999008 59999008 AAAGTCAACAGGAATGATAAGGCTT C - CTTACTATTTGAAGGAGTTACCTGG deletion Somatic Capillary sequencing 67941219 PD3851a 6 16193944 16193945 TTTCAAACACATACACACAAAAAAA - A TCAGAGGAAAATATTTGGAAATGTT insertion Somatic Capillary sequencing 67696765 PD3851a 3 164669182 164669182 CGCAGTGCAAAGTGAAAGCAAGTTT A - GGAAAGTAAAGGAATGAAAGAATGG deletion Somatic Capillary sequencing 67852571 PD3851a 12 21374558 21374561 TGATACGACCAGCATGTTTCAAAAG ACAA - ACAGTCAACAAACAACAAACATATG deletion homo_sapiens_core_58_37c SLCO1B1 ENSG00000134538 CCDS8685.1 ENST00000256958 Somatic Capillary sequencing 67672148 PD3851a 2 64578180 64578181 AACAGGCACTGAAGTGGTAGGAAAA AC - AGTCTTGATCGCTGATGCCACCCCT deletion Somatic Capillary sequencing 67746337 PD3851a 10 60723391 60723409 TTGGGTACAGATGGGAGGAATGTCC CAGAGATTGCAGGAAAAAA - AATGCTTTTATCCTCCTCTTGCCTT deletion Somatic Capillary sequencing 67695466 PD3851a 3 154799798 154799798 CACTGTCTTCATTTCTCTGTAACTG T - TTCTGCAAACTTGGGTGCTGACCCA deletion homo_sapiens_core_58_37c MME ENSG00000196549 CCDS3172.1 ENST00000460393 Somatic Capillary sequencing 67686937 PD3851a 3 95033883 95033883 CTGCATGACAAAAACAAAACTAAAC A - AAAAAAAGTTATTGCTAAAAATGAT deletion Somatic Capillary sequencing 68017896 PD3851a 5 74696800 74696800 TAACGTAAACTCAAACATGTGTGAT G - TAAGTGTCACTTGGAGAATATCTAT deletion homo_sapiens_core_58_37c COL4A3BP ENSG00000113163 CCDS47235.1 ENST00000380494 Somatic Capillary sequencing 67723868 PD3851a 3 67515239 67515259 TCTCTGAGACAATATATAGAAGTAG AAATGAGATTGGTGGATCAGT - CTTCAACTGGTTTGAAGGTGATGGT deletion homo_sapiens_core_58_37c SUCLG2 ENSG00000172340 CCDS43104.1 ENST00000307227 Somatic Capillary sequencing 67504951 PD3851a 1 220948160 220948161 ACCTTGGCCTCCATTCTCACCTGAC TG - TGCACTCTCTCTGGCTATACATAGA deletion homo_sapiens_core_58_37c MOSC2 ENSG00000117791 CCDS1525.1 ENST00000366913 Somatic Capillary sequencing 67797836 PD3851a 4 54021061 54021063 TTCAACATTTATGGCTTTGAAGATG GAA - GAAGAAGGCCATGAGCCATGGAATG deletion homo_sapiens_core_58_37c SCFD2 ENSG00000184178 CCDS33984.1 ENST00000401642 Somatic Capillary sequencing 68033838 PD3851a 5 50704454 50704456 GCCAAATGAATTTCCTGTCTTTATA AAT TA TACCCGTCTGTGGTGCTCTGTTCTA complex Somatic Capillary sequencing 67933233 PD3851a 6 29104687 29104687 TTCATTTGCTCTCATAAATTGTAAC T - AATTTCGTGACAAAGTTTTAAGTTT deletion Somatic Capillary sequencing 68050005 PD3851a 15 26826084 26826084 TACATGAGGTAAGCTCAGAGCAAAA G - GAATGTTCTCCTTGGCATATTTGGA deletion homo_sapiens_core_58_37c GABRB3 ENSG00000166206 CCDS10019.1 ENST00000311550 Somatic Capillary sequencing 68220358 PD3851a 16 19703301 19703302 AACCTCCGCCTCCCGGGTTCAGGCG - T TCTCCTGCCTCAGCCTCCCAAGTAG insertion homo_sapiens_core_58_37c C16orf62 ENSG00000103544 CCDS32397.1 ENST00000251143 Somatic Capillary sequencing 67776668 PD3851a 7 99174113 99174115 CAAAATCTGAAGGTCTCAGACAGAA GCG - TTTGGGAATGTTGGAATCACATCTC deletion Somatic Capillary sequencing 67562739 PD3851a 6 124887309 124887309 CTGTCTGTGTTCAATTATTTTAAAG T - CAACTACAGACATGGCAAACTAATT deletion homo_sapiens_core_58_37c NKAIN2 ENSG00000188580 CCDS34526.1 ENST00000368417 Somatic Capillary sequencing 68169809 PD3851a 16 78890297 78890298 GCTCACGCCTGTAATCGCAGCACTT - T GTTGGCTGAGGCGGGTGGATAGCTT insertion homo_sapiens_core_58_37c WWOX ENSG00000186153 CCDS42196.1 ENST00000408984 Somatic Capillary sequencing 67723344 PD3851a 3 63930130 63930130 TTGATCTGATAACTACTAAGTGACT A - ATGGACAGGTAGTGTAGACAGTGTA deletion homo_sapiens_core_58_37c ATXN7 ENSG00000163635 CCDS46861.1 ENST00000398590 Somatic Capillary sequencing 67919726 PD3851a X 22848410 22848412 AAATTAACCATTTTTTTAATTAAAC AAG - AAGTTGCAAATATAGTAGAACATTA deletion Somatic Capillary sequencing 67725861 PD3851a 3 78599666 78599668 GCATTTATTAAGATACCTGGAAAAT CTC - CTTCTATGCAATAAAATTACTTAAA deletion Somatic Capillary sequencing 68161859 PD3851a 16 69074364 69074367 CGCCCTTTGCAATTTCTCCACCTCT TTTA - TTTGTCTATTTCTCAATCTTCCTTT deletion homo_sapiens_core_58_37c TMCO7 ENSG00000103047 CCDS45516.1 ENST00000261778 Somatic Capillary sequencing 67530800 PD3851a 17 54688714 54688715 GAGGAGTCAAGGATAGCTCCAATGT TC - TTTCCATTGCATAATGACTACTGTC deletion Somatic Capillary sequencing 24297404 PD4194a 7 38069150 38069150 GTCTTTAATCCATCTTGAATTGATT T - TTAATAAATGGTGCTGGGAAAACTG deletion Somatic Capillary sequencing 24414515 PD4194a X 81871829 81871830 TTTGATCTGCTATTACTGTTTTTTT - T TATAAGACACTCAGTACTTAGCTTT insertion Somatic Capillary sequencing 24524520 PD4194a 11 76948362 76948362 CTGCTGTATCCTTGAAATTAATGAT A - AATCTCGGCAGTATGTAGGTTATCT deletion homo_sapiens_core_58_37c GDPD4 ENSG00000178795 CCDS8249.1 ENST00000315938 Somatic Roche 454 pyro-sequencing 24631970 PD4194a 8 108894186 108894206 AAAAGGAGCAACCAATGGTTTTTTG AACCACAGAGCAGAAGTACCA - CCATAATGAATTTACCAATGCTCCC deletion Somatic Roche 454 pyro-sequencing 24597138 PD4194a 7 150616963 150616963 TTTAGTGTAGTCATATGAACTAATG T - TTTCCTTTAGATTTAGTGCTTCTAG deletion Somatic Capillary sequencing 24571234 PD4194a 6 152143517 152143517 CTGGTTTTGAAAATACTGTCAAGAT C - CTTGCAACAAAATGAGTTCCTCTAA deletion homo_sapiens_core_58_37c ESR1 ENSG00000091831 CCDS5234.1 ENST00000440973 Somatic Roche 454 pyro-sequencing 24347911 PD4194a 3 40922128 40922137 AAAATAAATAAATAAATAAAATAAA AATAAAAAGT - ACGTACATTAATTTTAAAATGCTTT deletion Somatic Roche 454 pyro-sequencing 24336886 PD4194a 16 68772237 68772240 CTCTGCCAGGAGCCGGAGCCCTGCC ACCC GTG TGGCTTTGACGCCGAGAGCTACACG complex Somatic Roche 454 pyro-sequencing 24463489 PD4194a 12 68448132 68448132 GGTTAGTTACATACATATACATGTG C - CATGCTGGTGTGCTGCACCCATTAA deletion Somatic Roche 454 pyro-sequencing 24285090 PD4194a 3 148843232 148843238 AGTCTGAAAATGACAGAGAATAGAG ATGTTAA - ATTGGTGACATAGTATGGATGTGTG deletion Somatic Roche 454 pyro-sequencing 24264711 PD4194a 18 34390462 34390462 CAGATCCATGCCCAGGCTATATTTT G - GGGGGTGTGATAGGAGGGCAGGGAG deletion homo_sapiens_core_58_37c C18orf10 ENSG00000134779 CCDS32817.1 ENST00000334295 Somatic Capillary sequencing 24447646 PD4194a 8 29201896 29201897 CCCTTTGAATGTATGAAATGAATGT - GTA TGAACGTGTCTGTGTCCTACTGAAT insertion homo_sapiens_core_58_37c DUSP4 ENSG00000120875 CCDS6072.1 ENST00000240100 Somatic Capillary sequencing 24270933 PD4194a 18 77954082 77954089 GTCTACATACATCTACAAAAAGACA AAAAATAT - GGTGGTAGGTTAAAATAATTGCTAT deletion homo_sapiens_core_58_37c PARD6G ENSG00000178184 CCDS12022.1 ENST00000353265 Somatic Capillary sequencing 34224574 PD3945a 16 55033060 55033075 GTTAACCATGATAACTTTCTGAGTA ACAGTTTTCTTATCTG - ACAAATGGGGATATTGCTATTCATT deletion Somatic Capillary sequencing 34163390 PD3945a 8 104183054 104183054 TAGAAATGGGGGCCCTTTGAGAAAC T - TTCAGTATTCTTAGAAATGGAAGAT deletion homo_sapiens_core_58_37c BAALC ENSG00000164929 CCDS6297.1 ENST00000309982 Somatic Capillary sequencing 33735251 PD3945a X 45321238 45321239 AAGACCAGAAACCATTAAAATTCTA - A AAAAAACCTAGGTTTTCAGAAAAAC insertion Somatic Capillary sequencing 34125584 PD3945a 7 46512934 46512943 TTCTAATGAGTACAAAGTGGCATCT GATTGTGGTG CATAA TGATTTGCATTCTCATAATGATTAG complex Somatic Capillary sequencing 33597755 PD3945a 5 85240482 85240482 CAGACTACAAAGACTCAGTAGTCAC A - AAAAAAAGAAGGTCAATGGAGTTAC deletion Somatic Capillary sequencing 34284958 PD3945a 21 28734569 28734569 CATGGTAATGTGCTGCCACCCCTAA C - CCCAAGTGTTTCAGCAGAGTAGATT deletion Somatic Capillary sequencing 34173903 PD3945a 8 84205196 84205197 TCAAGTATATAAATATATATATATA - AT TAGATCTATATATTGCAAATGGCTG insertion Somatic Capillary sequencing 34191292 PD3945a X 63686963 63686966 CATTATGAGACTTGCTTTTTAAAAT GTGG - GCAAAGAAAACCAGCAGCATTGATG deletion Somatic Capillary sequencing 33937521 PD3945a 5 25482918 25482936 TTCTTCTTATGTGAAGCATATAAAA TAGTCAAACGTACAGAACT - TACTTCTTTCCTGACTTACTTTACA deletion Somatic Capillary sequencing 33611864 PD3945a 5 63017105 63017106 AAGTCTTCAGAGAATCCTTGTTTTT - T AGTTTACATGGCTTTCCAAAGCCTT insertion Somatic Capillary sequencing 33782895 PD3945a 15 99387771 99387775 CATGTCTACTTACAAATAAATTGCT TAAAC - TAGTTAGGCTTGTGTAAATGTAACT deletion Somatic Capillary sequencing 33677227 PD3945a 4 104060408 104060409 GAAATATGAGAATAAAAAAGATTTT - T CAGATTTTAATAAACTTGTCTGAAC insertion Somatic Capillary sequencing 33781413 PD3945a 15 89693783 89693802 CCTCCTCCCCTCCCCCGAAAAGGAA GCTTGTCTGGGAACTGGTTT - GCTTAAGGTGATAGCTTCACTTCTC deletion Somatic Capillary sequencing 33641204 PD3945a 20 44095106 44095110 CCTGATATATATTTTTTTACACTCA TGAAG - TCAAGTCCAAAACTTTGGATGCATC deletion Somatic Capillary sequencing 33826219 PD3945a 3 153676042 153676042 ATTGGACGATGCCTCTACTGTAACC G - ACTACCAAACTCTGACACCCGCCTG deletion Somatic Capillary sequencing 34133719 PD3945a 2 4393228 4393228 GAATCATCATTTCAGCCTTGTGAAA C - CTTGAGCACAGAAGCCAGTCACACC deletion Somatic Capillary sequencing 34132501 PD3945a 7 53609600 53609601 TAGATTTATTGATGTAATTATATTA - C CCGGTGGCTGTTTAAAGTTAAGAGG insertion Somatic Capillary sequencing 33940361 PD3945a 5 45425491 45425491 CATTAAATCCTTTGACATTAATTAC A - AAAGTGCATAAAATAACTCTAGGAT deletion Somatic Capillary sequencing 33751840 PD3945a 14 41289118 41289131 GCAGAGTGGCATCATTTTTATGAGT GGGATCCTTATAAA - GGGTGAGTTTGGTTCCTTCTCTAGC deletion Somatic Capillary sequencing 34063144 PD3945a 10 96645644 96645645 TCAACAGATGACCAGATTAAAAAAA - A ATGGTATATATACAAAATGAAATAC insertion Somatic Capillary sequencing 34099797 PD3945a 3 51017308 51017309 GGTGGTGTCTTTAGCTTTTTCTATA TA - TGTAAGGTTATGTCATCTACAAAGA deletion Somatic Capillary sequencing 33565069 PD3945a 9 127504169 127504169 GATGCACTGAGGTCAGTGAAAGTGC T - CGGTAGCCATGATCGATATCAGGGA deletion Somatic Capillary sequencing 33939868 PD3945a 5 41229680 41229680 TCAGTCTTTTTTGATGTGGTAAGAC T - TTTTTTTGTGGCCTAACATGTGATC deletion Somatic Capillary sequencing 33983896 PD3945a 8 40218145 40218149 CCCAAGTTTATGTGGCCACAGTTGA CAGAG - CAGAGATTCACATTCAGATCTGTCT deletion Somatic Capillary sequencing 34155869 PD3945a 8 48780670 48780670 TAATGTATCTTTAAAAATTTTTGTG T - TTATATTCATGAAGGATACTTACTG deletion homo_sapiens_core_58_37c PRKDC ENSG00000121031 ENST00000314191 Somatic Capillary sequencing 34042366 PD3945a 4 46662781 46662782 CCTTCATTTTACAGACATGACCTAG - TAGA ACTTGCTATTCAACGTGTGGCCCAC insertion Somatic Capillary sequencing 33818238 PD3945a 3 94968009 94968009 TAAGTAGAGTGTTTCCTTAATTTTG T - TTTAGGATTGTTCATTGATAGTGTA deletion Somatic Capillary sequencing 34005247 PD3945a 1 52244501 52244502 CTAAACACTACCCAACAATTGTATA AC - ACAGAGTCTTTTCCAGGTGCATGTG deletion Somatic Capillary sequencing 34242181 PD3945a 6 128873693 128873693 CAAAAAGAAAGAAGGAAAGAAAGAA G - AATGAAAGAAAGAAGAAAAGACAAA deletion Somatic Capillary sequencing 33693054 PD3945a 2 123113536 123113537 CTGTCATAGCAACAATAGAAAACTC AT - ATAGATTCTGGTGCCTGCAAATGTG deletion Somatic Capillary sequencing 34011193 PD3945a 1 97764787 97764788 ACACAATACTCTCTAGTTTTACTTT CA - TAATAGAACATTTTTTGATTAATTT deletion Somatic Capillary sequencing 33866386 PD3945a 13 77018897 77018898 GCAGGCAAGGCTATTATTAAAAAGT - A AAAACTAACAGATGCTGGTGAGGTT insertion Somatic Capillary sequencing 33787140 PD3945a 15 46277809 46277810 TTAAAATTCATATGGAACAAAAAAA - A CCTGTATAGCCAAGACAATCCTAAG insertion Somatic Capillary sequencing 33907599 PD3945a 1 218027775 218027801 CCATCATATTAAGGATAAATCTAGG CATTATCTTCCTCTCAAAATAGGGTCA - CTCTGAGAAGTCCTGTATTTCTATT deletion Somatic Capillary sequencing 34161365 PD3945a 8 89954038 89954038 TCTCTCCTTCACTTTAAATAAACTT A - AAAAAATGTGGGTACATAGTAGGTG deletion Somatic Capillary sequencing 34158982 PD3945a 8 71837026 71837026 CAAAAGAACAAAATATCTCATTGTT A - AAAGTTACATTTCTGCAAACTTCCT deletion Somatic Capillary sequencing 34241728 PD3945a 6 124363143 124363143 AAACTGATATAGTGTTTCTTGCTAC T - TCTAAACTCTAAATATAATGGAATA deletion Somatic Capillary sequencing 34199471 PD3945a X 151213881 151213885 CTGGCAGGCTGAGCACTCTAGTCTT GAGTA - GAGAACTGCTTGATAAGCACTGAGG deletion Somatic Capillary sequencing 34079788 PD3945a 18 40203086 40203086 TATAACATATACAAACTTCCTTAAA T - TTTTTAATTGAAAAAATGTGTGAAA deletion Somatic Capillary sequencing 33930212 PD3945a 19 22777217 22777217 ACAATGGACTGTCCTATTTTGTGGT A - AGGGTGCCTCACCAATAATCTGTTA deletion Somatic Capillary sequencing 33692107 PD3945a 2 115584298 115584311 AATTTTTGTATTTTTAGTAGAGATG GGGTTCACCATATT - GGCCAGGCTGGTCCCATCCTCTTGG deletion Somatic Capillary sequencing 34245604 PD3945a 6 157265320 157265320 TAAAAACGGGCCCTTTGCATTTGGG A - AAAAGTCAGTGGAGTGAGTAAAGTG deletion Somatic Capillary sequencing 33909623 PD3945a 1 233470183 233470183 TTGTCTTGATTTCTGATACTGTATT C - GTTTCTTGGGAGATCTGTCAGAAGT deletion Somatic Capillary sequencing 33983256 PD3945a 8 34416744 34416760 TCAGTGCAGCCTGCTGTTGTAACTG AACTGTCCACCTCACTA - ACAAGAGGTGATGTCAGTTATTCTG deletion Somatic Capillary sequencing 33724177 PD3945a 2 220806574 220806575 TATGGCCTTTATTGTGTCGAGGCAC - T TTTTTAAAATTTAGTTCTTTTTTAA insertion Somatic Capillary sequencing 33597917 PD3945a 5 86056170 86056170 TCCAGATTTGTATTTTGTGCCATTA C - TTTCACGATTTCCTAAATGTGCATC deletion Somatic Capillary sequencing 34160945 PD3945a 8 87040281 87040281 AAAAGGGAAGATATATGCCAGCCAG A - AAATATATCCTCTTCCAGACAGTAG deletion Somatic Capillary sequencing 34116594 PD3945a 3 90096396 90096397 TTATTAACAGAGATGGAGAAAAAAA - A ATTTGTCAAATCAGTAGCTACATAT insertion Somatic Capillary sequencing 34104351 PD3945a 3 83860341 83860368 GGGAAGTATTTCCTCCTCTTCAATT TTTTGAAATAGTTTGAATATAACTGACA - TTAGATCTTCTTTAAATGTTTGTTA deletion Somatic Capillary sequencing 33726997 PD3945a X 5158431 5158434 GTACCCATTTTTTTAGCTCCTATTT GTAA - GTGAGAATGTACAGTGAGAATATGC deletion Somatic Capillary sequencing 34064558 PD3945a 10 109001245 109001246 TCTGGCCATGCCACCAAGCTCCCTG - TT TTTTTCCTCCAGCCTTTCAGTCTAG insertion Somatic Capillary sequencing 34150056 PD3945a 2 37923202 37923203 CTGAAATAAAACTATGCAAAATTGA - T TTCTTCACCGAAAATAACAGCAATA insertion Somatic Capillary sequencing 34053426 PD3945a 10 117262882 117262882 TAGAGCTTTAAGAAAATATTGTTAG T - CTCAGGCAATAACAAACAGGACATG deletion Somatic Capillary sequencing 33730077 PD3945a X 38599998 38599998 ATTATTTAAATAACAATGGTGTGTC T - TTTGCTAGGTGTTGATTGGGCAAAT deletion Somatic Capillary sequencing 34225266 PD3945a 16 59944434 59944434 CACGAAGGAGATTCTATGTACTCTT C - AAAATAATTTCATAATGGTTCCATG deletion homo_sapiens_core_58_37c AC009094.1 ENSG00000245753 ENST00000500445 Somatic Capillary sequencing 33832742 PD3945a 3 94710212 94710213 TGAATGAATTTAAATGACTTTTTTT - T TTTTGTACCATTCTATCCATAAAGT insertion Somatic Capillary sequencing 33582106 PD3945a 6 40334323 40334323 CTGTCACCTTGATATCGAAACCAGA C - AAAGATATTATAAGCAAAGAAAACT deletion Somatic Capillary sequencing 33778718 PD3945a 15 68271471 68271471 CTGCTACTAGCCCATGTATTTTTTA T - TTCAATAATTATATATTTTATTACA deletion Somatic Capillary sequencing 33675182 PD3945a 4 84488307 84488308 TTCCTAGTTTGTACTTCATTTTTTT - T TCTTGTCTGGTTGTGCTGGCTGATA insertion Somatic Capillary sequencing 33853591 PD3945a 13 79883177 79883179 GTAATTCTTCCATCCCCAGACACTC TGA - TGTTATTAGCATGTAGCATGACCCA deletion Somatic Capillary sequencing 33667845 PD3945a 4 183010465 183010465 TATATCACATAGCTATGGAGTTGTG C - CAAAAGTCGGGTCTCCTGATTTTTG deletion Somatic Capillary sequencing 33744198 PD3945a 10 8534904 8534905 TTGGTATAAAGGTAAATCTAATCTT - GGT ACCCTAAAAATTTGTTTTTATCCTC insertion Somatic Capillary sequencing 33827854 PD3945a 3 166925184 166925206 TTTTTTCCTAGTGTGGTCCCCTCCA CTTGAAATATTCTTCAGCTTATT - CTATCCCAGATAGTGATTCAGACTG deletion Somatic Capillary sequencing 33728996 PD3945a X 26789199 26789201 TACATCTAAAACGTGTGTAGCAAAA CAC - CAGTTATGATGTAGCTATCTTATTG deletion Somatic Capillary sequencing 34220218 PD3945a 17 59946312 59946313 ATACTGTCTCAGAGTGACAGAAAAA - A ATATTGCATCACTAAATGCAGAAAA insertion Somatic Capillary sequencing 33697336 PD3945a 2 154624567 154624567 TAATGTCCAGAAGAGTTTTTCCTAG T - TTTTCTTCTATGATTTTTATAGTTT deletion Somatic Capillary sequencing 33731694 PD3945a X 20187563 20187577 GTTTGGATGCTGTCCATAACGAAGA AGAATTTCAATTTCT CAGCA TCTGTTGGGTCTCTCTTGCTTTTAT complex Somatic Capillary sequencing 33824318 PD3945a 3 140639597 140639597 TATAAATGGCAGCTAAACACTGGGG A - CACACTGAGACAAAGATGGGAACAA deletion Somatic Capillary sequencing 33935045 PD3945a 5 9761434 9761434 CTTTATCTTTCTCATTTTTTATTTT C - CTTGGAGCTGAACAGGAGGGAAGCT deletion Somatic Capillary sequencing 34285340 PD3945a 21 31067273 31067273 TGCATGAGAATATTCAAAGAACTGG T - TTTTTTTCTTTCTTTTCTTTTTTTC deletion Somatic Capillary sequencing 34205423 PD3945a X 131337135 131337136 CGTCTTACAAAATGACAAGAATGAA - T CTATTGGAAAAATTTTACTTTTACA insertion Somatic Capillary sequencing 33663750 PD3945a 4 159204205 159204205 GATAAGTTAGCCATGATACACACAC A - AAAAAAATGAGTATTATTAAGCTAA deletion Somatic Capillary sequencing 33907870 PD3945a 1 219830563 219830563 CAAATGCCAGCTTATAACAATTTCA C - CCACAAACTATATTTAAGCACAGCA deletion Somatic Capillary sequencing 34044838 PD3945a 10 55708145 55708145 TCTGTTTTGAATTATACATTATTTG A - CATTAATATAGTAATTTCTGCTTTC deletion Somatic Capillary sequencing 33988699 PD3945a 8 34416660 34416661 AATGCAAGAATCATCCTTTTAGTGG - A AAGAACATTCATTCATTCCTAAGGC insertion Somatic Capillary sequencing 34163739 PD3945a 8 106407848 106407848 TCCCATGTTGATCTGTCCCCTATTT C - CCCCCATACAATGGTTTTATATAAT deletion homo_sapiens_core_58_37c ZFPM2 ENSG00000169946 CCDS47908.1 ENST00000407775 Somatic Capillary sequencing 33772558 PD3945a 15 25541660 25541660 AACAAGTCAAAAGCAAAAAGGAAAT A - AAAAACTACACATTATCATACAACA deletion Somatic Capillary sequencing 33782319 PD3945a 15 95405823 95405823 GGCATAATTCTAGGTTGGCAGAATA T - TTTTTTTCTTTTTTCTTTCAACACT deletion Somatic Capillary sequencing 33940699 PD3945a 5 36215449 36215464 TAACTGTGTATATTTATGGAGAACA GGTAATATTTTGATAC TT ATGCATACAATGTATAATGATCAAA complex Somatic Capillary sequencing 33650490 PD3945a 4 63911510 63911510 GAAACACCGTCTCTACTAAAAATAC A - AAAATTAGTCGGGCATGATGGTGCA deletion Somatic Capillary sequencing 33652140 PD3945a 4 74047271 74047296 TATAAACATACAAAAATAAGTATTC CTTTATTAAATTATGGGCATACACCT - CTCTGCCATACCACATCCCCAGCTG deletion homo_sapiens_core_58_37c ANKRD17 ENSG00000132466 CCDS34004.1 ENST00000358602 Somatic Capillary sequencing 34052249 PD3945a 10 108309666 108309669 AAAAGAGTATGGAGACTGCTGAGAA AAGT - AAAAATAGAATTACCATATGATCTA deletion Somatic Capillary sequencing 34174167 PD3945a 8 87038860 87038861 TTGCCTAGCTACTACAACCTTTCTT - T AATTTTCTAAGCCACGTGGTATAAA insertion Somatic Capillary sequencing 34262153 PD3945a 9 10525830 10525830 TCATCACAGGGTTCTCGCTTTCCAC T - TTGTTTTTACATTTGTTCTTCGCCC deletion Somatic Capillary sequencing 33844016 PD3945a 3 191675630 191675631 TATGATCATTATTATTATTTGATAG - T TTTTTCTTTCCTTGTTTCTATCTCT insertion Somatic Capillary sequencing 33844015 PD3945a 3 191674324 191674325 GGTATTGTACTTATGACATGTGTCT - T TTTTTAAAGTACTTGCCACATAGTA insertion Somatic Capillary sequencing 33900573 PD3945a 1 168240731 168240731 CAGGCTAATTTTTTTTTGTATTTTT A - GTAGAGACGGGGTTTTACCATGTTG deletion Somatic Capillary sequencing 33916827 PD3945a 1 170125255 170125256 GCCATGTGACATTTCTTTCCTGCTC - G TTTTTTGCTAACCCAAATAAAAAGT insertion Somatic Capillary sequencing 34104632 PD3945a 3 86278601 86278601 TTTTATAACACAGCAGTTGCCAGAC A - AAAATAGGGTCCAGTAGTAATTGGG deletion Somatic Capillary sequencing 33914486 PD3945a 1 149817325 149817326 GGAGAATGTGACTGGAGAGGCCGAT - CTAC TAGCAGTGGAGATGCAGAGTAGTAG insertion Somatic Capillary sequencing 34163659 PD3945a 8 105921812 105921826 TGCAATGAAAATTGTCAAGGGTGAG TGCGTTTAAAAATTA - TAGAAAAATAAAGGTTATAATATTG deletion Somatic Capillary sequencing 34033205 PD3945a 4 32166435 32166435 TTCTTTCATTTATTGACACATTTTA T - TTTTTTCTGAAGAATGTCATGGAAC deletion Somatic Capillary sequencing 33937087 PD3945a 5 23167758 23167758 CAGCAAACAGCAGCAGCTTTCCAAT A - ATATCTATTGACATGCTCATCTCTG deletion Somatic Capillary sequencing 34143574 PD3945a 2 80616288 80616288 TGTAGTTTCTAAATCAATTCTTTCA T - TTTTTTTCCACATCAAAAATACTTT deletion Somatic Capillary sequencing 33940387 PD3945a 5 45680490 45680490 ATGATTTGAATTTATTAGGCTTCCT C - AATTCCATTACATAATACCTCCTTT deletion Somatic Capillary sequencing 34035319 PD3945a 4 46836500 46836500 CTAGCACATTTGGAAATTGTGTATA G - GATAAACATGGCATAGCAAATTCAC deletion homo_sapiens_core_58_37c COX7B2 ENSG00000170516 CCDS3472.2 ENST00000396533 Somatic Capillary sequencing 33818457 PD3945a 3 97245935 97245935 GAGCCAAAAGCTGTTACAGGATAGC T - TTTGGGTTCACGGACAAAACTGATG deletion Somatic Capillary sequencing 33907671 PD3945a 1 218310958 218310958 TCTAGTTTTTAAAAATGAACACAAA G - CTTCAACAGATTCTTCACAAAAGAT deletion Somatic Capillary sequencing 33964722 PD3945a 11 121790875 121790876 ACATATATTTAAGAAACATTAAAAC - A AAAAAAATTGAAGTCAACAGGGGGC insertion Somatic Capillary sequencing 34046743 PD3945a 10 67801063 67801077 AGATTGGAGGAGCCAAAGGAGATAT GGCAGCTAAATATAA - GGTGAGATCCAATTAGTAAAAGAAC deletion Somatic Capillary sequencing 33855236 PD3945a 13 91424792 91424792 TGACTATGCAGTTAATGATTGAACA T - TTAGTTTGGAAATACTACTTTAACT deletion Somatic Capillary sequencing 34082791 PD3945a 18 62294876 62294876 AAGTTCAAAACACAAAACAAGATTT C - TTTTCATCTTTACATATCTGACCCA deletion Somatic Capillary sequencing 33709742 PD3945a 2 181022725 181022729 ACCTCTTAAAATACTTTTCATAAAG GGTGC T ATTAAAGGGTGCAAGTCTTGGTTTT complex Somatic Capillary sequencing 34083885 PD3945a 18 68231998 68231998 TATGTAGCATTTAGTTTCTTTTTTG T - TTTTTTTAAAGGATTTCATAAATAT deletion Somatic Capillary sequencing 33901545 PD3945a 1 176219378 176219402 AAACTTGTTAATTAGGAGTATCTCA TTCTCTTCAAGATAAAGAGCCTCCT - TTCTTTAAAACTGTCCATTTTGGGT deletion Somatic Capillary sequencing 34135962 PD3945a 2 22291701 22291701 ATAAGCACTAAAACTGCAAACTTTT A - AAAAGAAAACATAGAAGAAAATCAT deletion Somatic Capillary sequencing 51941574 PD4103a 11 60397101 60397101 CAAAGGTCAGCCTGTCCTACTCCCT G - GAAGTTTATTTTGTCACACATCATG deletion Somatic Roche 454 pyro-sequencing 52377571 PD4103a 2 63140406 63140407 AATCAGTATATTCAATTATAATGTT AA - GAGATTAGCCAAATGATCTTTTAAA deletion homo_sapiens_core_58_37c EHBP1 ENSG00000115504 CCDS1872.1 ENST00000263991 Somatic Roche 454 pyro-sequencing 52561137 PD4103a 3 65471423 65471423 CTAATCTTTATAAACAATCTTAGAG A - AAAAAAGGCATCAATATTCCCATTT deletion homo_sapiens_core_58_37c MAGI1 ENSG00000151276 CCDS33781.1 ENST00000330909 Somatic Capillary sequencing 52239232 PD4103a 10 21593531 21593542 ATTTGCCACTGACGACAGTGGGTAG GAATTGAGAGAC - ATCATGCCTTAGGAAATTAGGGCAT deletion Somatic Roche 454 pyro-sequencing 51928164 PD4103a 6 43943016 43943017 TATTCATCTTTTTGCAAATTTCACA CT - CTCTTGATGACTACTGTAGTTTTGA deletion Somatic Roche 454 pyro-sequencing 52602627 PD4103a 5 22141173 22141173 TAATGTATCCATTATCATACTTCTC A - AATTTATTTTTGCCAACTCTCTGCT deletion homo_sapiens_core_58_37c CDH12 ENSG00000154162 CCDS3890.1 ENST00000382254 Somatic Roche 454 pyro-sequencing 52157810 PD4103a 20 46237508 46237509 CCAGTTTTTAAGAGGTAAAGGAATC CT - GAGATCAAAAGGCTTGAAATCTAGT deletion homo_sapiens_core_58_37c NCOA3 ENSG00000124151 CCDS13406.1 ENST00000340189 Somatic Roche 454 pyro-sequencing 52602544 PD4103a 5 21562601 21562617 CCTGTTAGTCCTGCCTGTTAGACTT CCTGTTTTTGCTTTTTA - TTTGATGTCAGTGAATTTCTTGGTC deletion Somatic Roche 454 pyro-sequencing 52165722 PD4103a X 3664652 3664652 TCAAACTTTGGACTCAAGAGACCTG C - CCCCGCTTGGCCTCTCAAAGTGCTG deletion Somatic Capillary sequencing 52030711 PD4103a 9 10006797 10006798 TGGTCAAAGACTTACTACAATCTAG AT - ATATTCTATTGACAACTTTCTTCCA deletion homo_sapiens_core_58_37c PTPRD ENSG00000153707 CCDS43786.1 ENST00000381196 Somatic Roche 454 pyro-sequencing 52170402 PD4103a X 51207195 51207195 TTCATGGCACAAAAAGGGAAAGAGA C - CCCCTCCATCCCTTTCCTTAGAGCA deletion Somatic Capillary sequencing 52061601 PD4103a 16 87504909 87504912 CGTGTCTCTAAAAACCAGAACAAGA AGAC - AGACAGTTTAAGAGTGAAAGCTATT deletion homo_sapiens_core_58_37c ZCCHC14 ENSG00000140948 CCDS10961.1 ENST00000268616 Somatic Roche 454 pyro-sequencing 52641574 PD4103a 7 30325840 30325842 TGTAGTTCTATCTGGGGACTCGAGT GGG - GAACAGTTTTTAAAGGCCAAAAGTC deletion homo_sapiens_core_58_37c ZNRF2 ENSG00000180233 CCDS5426.1 ENST00000323037 Somatic Roche 454 pyro-sequencing 52399287 PD4103a 17 59838311 59838315 TACCAAGGCCAGATAAGGACAATAC AAGAA - AAGAAAACTGTAGGCCAATATCCTT deletion homo_sapiens_core_58_37c BRIP1 ENSG00000136492 CCDS11631.1 ENST00000259008 Somatic Roche 454 pyro-sequencing 52183185 PD4103a 9 114576948 114576948 GGTGCTTTCCTGTGGTTGTACTTGT G - GGATTCAAAACTGGATTTTGTTATT deletion Somatic Roche 454 pyro-sequencing 52397558 PD4103a 17 48817654 48817654 ATCACAGATAATTTATACAATTATA T - TTTTTCCCCCAGGTCCGTGTGAAAA deletion homo_sapiens_core_58_37c LUC7L3 ENSG00000108848 CCDS2573.1 ENST00000505658 Somatic Capillary sequencing 52233398 PD4103a 16 26716076 26716077 CTACAAACACATACTATATCAAAAA - A AGATTTCTTAGGTGAAATGGACAAG insertion Somatic Roche 454 pyro-sequencing 52509558 PD4103a 18 42408111 42408113 TTGTTCAAACTATGATTGAAATGTC CCT - TTGTTGTCTTCAAGTCACTGGTTTA deletion homo_sapiens_core_58_37c SETBP1 ENSG00000152217 CCDS11923.2 ENST00000282030 Somatic Roche 454 pyro-sequencing 52070231 PD4103a X 87211034 87211034 TTGAGTCAGTAATAAAAAATCTACC A - AAAAAATTGTAGAACCAAATGGATT deletion Somatic Capillary sequencing 52537881 PD4103a 4 12960732 12960736 GGACTTTGTAAAAAATCATTTGTAC TTTAA - TTTAAGGAATATTTGCAGCACTAGA deletion Somatic Roche 454 pyro-sequencing 52513105 PD4103a 18 64965842 64965851 GGAACAGTTTGTCTGCACGTGGGAA GGATGACAAT - GGACTTTCTCAGTGTTGCCACAGGG deletion Somatic Roche 454 pyro-sequencing 52035735 PD4103a 9 24265453 24265471 TACCTACTGTTCTATTCCTAGTATT TTTGATTTTTAAAACTGCG ATTATTAT TATTCTCATTAACTCATAGAATCCC complex Somatic Roche 454 pyro-sequencing 52200706 PD4103a 15 39011203 39011204 CTTGCCAGCTTGTATGTTGGAAGAC TT - TTAATTTTTCTCCAATTTGATGTGT deletion Somatic Roche 454 pyro-sequencing 52369992 PD4103a 2 12041977 12041985 GATTCCTTCTGTCCTGGAGCCCTTT ACAGTTTAA - ACACTCACTCGGTTGGACAATTTCT deletion Somatic Roche 454 pyro-sequencing 52563706 PD4103a 3 80793597 80793597 TAGTAACAGATTAAAATTTAAGAAT A - AAAAATAAGTGAGAACACGGTTTTT deletion Somatic Capillary sequencing 52644959 PD4103a 7 54518972 54518980 CTGACTTAAGAGCCATCAATTCAGT TATACAACC - TATGGGAGCATTACAGCCAGGATTG deletion Somatic Roche 454 pyro-sequencing 51927672 PD4103a 6 40589753 40589754 CTCAGCTTCACTAGTCATCGGGGAA AC - ACAGAATAAACCACAGTGTGATCCC deletion Somatic Roche 454 pyro-sequencing 52018511 PD4103a 13 94343737 94343738 AGGATTAAAGGCTTGCCATGGTTTT - C TTTTTCTCTTATCACATTGAAGATA insertion homo_sapiens_core_58_37c GPC6 ENSG00000183098 CCDS9469.1 ENST00000377047 Somatic Roche 454 pyro-sequencing 52557244 PD4103a 3 37682543 37682543 TGCCTTTCCACATCCTTTCCTCTGA G - GGGGGTCCCGTCTCTGCAGGCCCGT deletion homo_sapiens_core_58_37c ITGA9 ENSG00000144668 CCDS2669.1 ENST00000264741 Somatic Roche 454 pyro-sequencing 52600078 PD4103a 5 6940588 6940588 ACACATTACATATAGAATCTCTAAT C - CCCCCCACCCCCCGCCAAGAACTGT deletion Somatic Capillary sequencing 52533122 PD4103a 8 20592964 20592965 CATGAAACAAAGTCTTCTCCAAACT - T AAGCACCATCTCTATCTCCCTGGTG insertion Somatic Roche 454 pyro-sequencing 52135175 PD4103a 14 59805480 59805480 CAATAATTTATATAATTGTTTTTTT C - CTCCTAATTCCTGAGTGGGAAATAT deletion homo_sapiens_core_58_37c DAAM1 ENSG00000100592 CCDS9737.1 ENST00000395125 Somatic Capillary sequencing 52264820 PD4103a 3 97135504 97135505 TCTCCTCTTTCCCACATTTAACAAA - A TTTATTGCACACCTACATGTGTAAT insertion homo_sapiens_core_58_37c EPHA6 ENSG00000080224 CCDS46876.1 ENST00000389672 Somatic Roche 454 pyro-sequencing 52511952 PD4103a 18 57643326 57643326 GATAATAAACACTCATGTACCACTG C - CCAGATCTTACAAATGACATTGTTG deletion Somatic Capillary sequencing 52541087 PD4103a 4 33880650 33880665 CAAGTACTTGAATTTCACAGTCTCA AGACTTATAGTCTAAC - AGCATTACAGCCCAGTAAACAGTGC deletion Somatic Roche 454 pyro-sequencing 52557118 PD4103a 3 36687286 36687286 TTCAGATTGTTCATTTCTAGTGTAT A - GTAATTTTGTCTGTTTATCTTGCAT deletion Somatic Capillary sequencing 51929774 PD4103a 6 54582097 54582098 AATATACTATTCCTAAATTGTTAAT AA - GAGATGCTTACTCAAGATCATAATC deletion Somatic Roche 454 pyro-sequencing 52067777 PD4103a X 62576272 62576272 CAAAGATAAGATTATAGAAATGGGG A - AAAAAAGCAAATAACCTATAAAGGA deletion Somatic Capillary sequencing 52643990 PD4103a 7 47946358 47946360 GATAAAGCAGAATGGGTATTCTGTC CTT - CATCAATGCATCAGAATTTTTGAAA deletion homo_sapiens_core_58_37c PKD1L1 ENSG00000158683 CCDS34633.1 ENST00000289672 Somatic Roche 454 pyro-sequencing 52302184 PD4103a 10 122437509 122437510 TAGTCAGACTAGCTCTTATTATTGA - A CATGCTTTATTATGTATCAAGAGCC insertion Somatic Roche 454 pyro-sequencing 52537292 PD4103a 4 9597099 9597102 CATAAATGTCAGCCAGCTGAGAAAT AAAG - AGACAGTACAAAGAGAGGCATTTTA deletion Somatic Roche 454 pyro-sequencing 51873570 PD4103a 19 50247573 50247577 CCTCTTCGAGAGTTCTGAAATTGCC GCCCG - AACTCCTCCAGAATGGGTTTCAGTG deletion homo_sapiens_core_58_37c TSKS ENSG00000126467 CCDS12780.1 ENST00000246801 c.1272_1276delCGGGC p.F424fs*11 Somatic Roche 454 pyro-sequencing 51949218 PD4103a 11 113718365 113718365 GGATTACTGATGATATTAAGGGATT A - TTTTTAGTGTGATAATGTTGCAGTT deletion homo_sapiens_core_58_37c USP28 ENSG00000048028 CCDS31680.1 ENST00000003302 Somatic Capillary sequencing 52138709 PD4103a 14 83959843 83959843 GTGACTGCCCTGAGGACAAGGACTC T - TTTCTGCTTCTGTTTTTCCTCTGCA deletion Somatic Capillary sequencing 52081329 PD4103a X 106069437 106069438 TCTGCTTTGCTAGCCAAGATGGCAA - AAT AGTGTAGTGTAATCATTCCACTACG insertion homo_sapiens_core_58_37c TBC1D8B ENSG00000133138 CCDS14522.1 ENST00000357242 c.1005_1006insAAT p.N335_Q336insN Somatic Roche 454 pyro-sequencing 51982339 PD4103a 12 68776521 68776522 TAATCATGTCATGATGAAGTTTGAT - ATATTAGAAATTAAAGCATAACGTC TCGTGGAGTGTAACAAAATAATATA insertion Somatic Roche 454 pyro-sequencing 52556305 PD4103a 3 31679931 31679931 GACTAAAATAGTATAAAAGCATCCT G - TATTGAGTTTCCATAGCCAAGGGGG deletion Somatic Roche 454 pyro-sequencing 52134052 PD4103a 14 52248988 52248991 TGTGTCTTTAGATGGGTATGCCACT ATTC - ATTCTTTTGATGATGGACATTTAGA deletion homo_sapiens_core_58_37c AL079307.3 ENSG00000250873 ENST00000504267 Somatic Roche 454 pyro-sequencing 52537725 PD4103a 4 11999774 11999775 GCGTTTTCTATCAAAATGCCAATAT TA - TGTTTTTGCACAAACAGAAAAAATA deletion Somatic Roche 454 pyro-sequencing 52600563 PD4103a 5 9697291 9697291 AATCTGAAAGACACCTTTTTTGTTT A - AAAAAAAAGACAACCTCTTGAAACA deletion Somatic Capillary sequencing 53776806 PD4198a 8 126037017 126037021 ATATCCTTGGAGCAAGGTGAATAAT AGAAG - AGGAGACTCCCATGGGCGGACGACT deletion homo_sapiens_core_58_37c KIAA0196 ENSG00000164961 CCDS6355.1 ENST00000318410 Somatic Roche 454 pyro-sequencing 53842761 PD4198a 19 21568266 21568266 GAGAGAGACTCTATCTCCAAAAAAA T - AAATAAATAAATAAAAAAAATAAGA deletion Somatic Capillary sequencing 53536987 PD4198a 2 180908162 180908163 AGATATAACTCTGTAGGATTTTTTT - T CCCCTATGATGTCTTTGTCTGATTT insertion Somatic Capillary sequencing 53606038 PD4198a 10 37497733 37497735 CAAGCAAGTGAAAGTAAACTTAAAT AGA - AGAAGTGACTCTCTTTTCAGATTGG deletion homo_sapiens_core_58_37c ANKRD30A ENSG00000148513 CCDS7193.1 ENST00000361713 Somatic Roche 454 pyro-sequencing 53569516 PD4198a 1 145557369 145557370 ATTTTGTCATTAGCAGAGCCACTGC AG - AGACTTCCTGCTATGATGAGGGGCA deletion homo_sapiens_core_58_37c ANKRD35 ENSG00000198483 CCDS919.1 ENST00000355594 Somatic Roche 454 pyro-sequencing 54093596 PD4198a 9 29500656 29500656 CATATGACTTCCAAAATAATTGGTA C - ATAGTACATGTTTATAAATATTATA deletion Somatic Roche 454 pyro-sequencing 53964481 PD4198a 5 55995157 55995157 TTCAAACCTTGAGTGTGAGAGTGAT G - AAAGCAAACAGTGGGAGAATGAATA deletion Somatic Roche 454 pyro-sequencing 53997665 PD4198a 1 15026278 15026278 AACAAAAGAATCAGGTCTGATTTGC G - GAGTTTGCCAGTGTCCATGGTGTAA deletion homo_sapiens_core_58_37c ENSG00000189337 ENSG00000189337 CCDS152.2 ENST00000376030 Somatic Roche 454 pyro-sequencing 54164821 PD4198a X 138270870 138270871 CCAAAAAGAGTTGAAAACAAAAAAA - A TTGATTGCTTCATATTTAAAACTAA insertion homo_sapiens_core_58_37c FGF13 ENSG00000129682 ENST00000436198 Somatic Capillary sequencing 53936175 PD4198a 6 66897394 66897394 AATATAAGCCTGTAACAAGGCATCA T - TTTTTTCACATATTTTAAGAAAAGA deletion Somatic Capillary sequencing 53745491 PD4198a 7 101526416 101526416 AGCCTCCAAAGGGGATGTTTGCTCA T - TTCGTCATCTTCCTATCACAGCAAT deletion homo_sapiens_core_58_37c CUX1 ENSG00000160967 CCDS5721.1 ENST00000292535 Somatic Roche 454 pyro-sequencing 53940640 PD4198a 6 100223410 100223410 AGGAGCAGGTTGTCAAATTCCATGT A - ATTGGCGGTTTGGTAGGAATTGCAT deletion Somatic Roche 454 pyro-sequencing 53764470 PD4198a 7 147595624 147595625 AACCCATATACCCAGATTTTTTTTT - T TTTTTTTTGAGACAGAGTCTCACTC insertion homo_sapiens_core_58_37c CNTNAP2 ENSG00000174469 CCDS5889.1 ENST00000361727 Somatic Capillary sequencing 54028098 PD4198a 2 10308483 10308485 TGATTTAATAGCGGGTTCGAGAGAT CTC - CTCCATCTTCATCCTGGCAGGGCTT deletion homo_sapiens_core_58_37c C2orf48 ENSG00000163009 CCDS1670.1 ENST00000381786 Somatic Roche 454 pyro-sequencing 53780220 PD4198a 8 48771291 48771292 AAACAAGGACAAAGTAAGACATGAA - A AAAAAAAATCACATTTATTTGATAA insertion homo_sapiens_core_58_37c PRKDC ENSG00000121031 ENST00000314191 Somatic Capillary sequencing 53881631 PD4198a 16 18994845 18994846 ACTGATTTGGAGTCTTGGGGTTTTT - T CGTGTGGACTTTTTATTTTTTAATT insertion Somatic Capillary sequencing 53572506 PD4198a 1 165916646 165916647 TGCAAAGTGCCAAGCATGTCAGAAG CA - CCACCAAGGCTGGCACTGCCCCATC deletion Somatic Roche 454 pyro-sequencing 53665384 PD4198a 3 180569975 180569976 AGATAAGCAGAGGAATAATGACTCT - A CTTAACGAGAATAAAAATGAATCAA insertion homo_sapiens_core_58_37c CCDC39 ENSG00000145075 ENST00000471307 Somatic Capillary sequencing 54111984 PD4198a 17 35472610 35472610 TAAAATGTATTTTCATTCATCTATT A - AAAAAATACTAGATTTCATAGTATA deletion homo_sapiens_core_58_37c ACACA ENSG00000132142 CCDS11317.1 ENST00000394407 Somatic Capillary sequencing 53400262 PD4198a 20 1997877 1997878 CTAACCACACTCAATATTCATCTAT - T TTTTTTTTAAATGTCTCTCAGCAAA insertion Somatic Capillary sequencing 53503188 PD4198a 11 105507294 105507295 TTCCAGGCCTAAAATAGAAAGGATT - TT CACCACCTCTCCCCTTTTTCCCTTG insertion homo_sapiens_core_58_37c GRIA4 ENSG00000152578 CCDS41706.1 ENST00000393127 Somatic Roche 454 pyro-sequencing 53921618 PD4198a 14 91846591 91846591 TAATAGGATTCGGCTATCTTGGGGC G - GCTGGACATACTGCAGCTTTTCAGA deletion homo_sapiens_core_58_37c CCDC88C ENSG00000015133 CCDS45151.1 ENST00000389857 Somatic Roche 454 pyro-sequencing 53520636 PD4198a 2 201769448 201769448 TAAAATTCGCCATTTTATTTTCCTG C - CCCCCCCTTCCAAAATTCACCATTT deletion Somatic Capillary sequencing 53399055 PD4198a 20 22218234 22218234 TTATGTTCTCTGAAGACACCGACAG A - AAAAAATTCTCCGTTTCCTTCATTA deletion Somatic Capillary sequencing 53653385 PD4198a 3 190604772 190604772 CTTTATACACAGGAGCAGGTAGCAC A - AAAAAAAATTGCAGCACCTGAGAGT deletion Somatic Capillary sequencing 53965115 PD4198a 5 60973898 60973899 ACCTCCCAGGCTCAAGCGATCCTCC CA - CCTCAGCCTCCCAAGTAGCTGGCAC deletion homo_sapiens_core_58_37c ENSG00000178722 ENSG00000178722 ENST00000505642 Somatic Roche 454 pyro-sequencing 53982098 PD4198a 5 56696086 56696087 TGGATCATGTGGTAGTCCTATTTTT - T TTTTATTTTTTTGAGGAACCTCCAT insertion Somatic Capillary sequencing 53450453 PD4198a 7 24322547 24322547 TAATTCAATGCTGTTGGAACAGCAC A - AAAACTAAGTGTCAGTTTAACAGAA deletion Somatic Capillary sequencing 54051331 PD4198a 4 59688582 59688585 CAATGAGATTTCAAGGAGAGAAGAT AGAG - AAAGAAATAGAAAAAAAATGAAAAA deletion Somatic Roche 454 pyro-sequencing 53758097 PD4198a 7 91820630 91820631 AGAGATTTTGGCACGTTGTGTCTTT - TT TTTCATTTATTTCAAAGATTTTAAA insertion Somatic Capillary sequencing 53641762 PD4198a 3 106754789 106754789 GAGGTTGCAGTTAGCTGAGATCGCA C - CACCTCACTCCAGTCTGGGCGACAG deletion Somatic Capillary sequencing 53533936 PD4198a 2 154100577 154100578 GAAAACTATTTTTATGTACTATTGA - A AAAAATGAAAGATTTTTGTTTGTTT insertion Somatic Capillary sequencing 53780642 PD4198a 8 53294452 53294453 ACAATGCTCACTAATCTTGCTTTTT - T TGAACAAATTCATGAAATTTAAAAG insertion homo_sapiens_core_58_37c ST18 ENSG00000147488 CCDS6149.1 ENST00000276480 Somatic Capillary sequencing 53508089 PD4198a 2 109093609 109093609 GTAAAAACTAGCAAGAGTAGCTAAA T - TTTTTTTTAAATGAAAAGAAAAAAG deletion homo_sapiens_core_58_37c GCC2 ENSG00000135968 CCDS46382.1 ENST00000409325 Somatic Capillary sequencing 53430582 PD4198a 18 21283938 21283939 AAGGAGCAATTCCAAGTTAGGAAGG GA - GCCCAGGATGTCCTATACATCAGGC deletion homo_sapiens_core_58_37c LAMA3 ENSG00000053747 CCDS42419.1 ENST00000313654 Somatic Roche 454 pyro-sequencing 53814536 PD4198a 18 5175815 5175815 ATGCTCATAACTTTAAATTATAGGG T - TTTTTTTAACTTAGTTAAACATGAA deletion Somatic Capillary sequencing 54120995 PD4198a 17 38802803 38802804 GATCTATATTATTATAACTTTTTTT - T ACTTATCAATATGGCTAGATTGTAT insertion homo_sapiens_core_58_37c SMARCE1 ENSG00000073584 CCDS11370.1 ENST00000348513 Somatic Capillary sequencing 53517010 PD4198a 2 174379399 174379399 CAAGGCAGTTGGTATCAGATGGGAA G - GCTTTCTGTACGCACCCCACTGAGG deletion Somatic Roche 454 pyro-sequencing 53789133 PD4198a 8 127367688 127367689 AGCTGCTAGATATTTTTGAGATAAA - TTTT TTACACACAGTGAAATGCACAGCTC insertion Somatic Roche 454 pyro-sequencing 53483479 PD4198a 21 32105783 32105784 ATTTGGTATTGAGTTGATCTTCTTA - T TTTTTTTTGGTATTAAGCAATACAT insertion Somatic Capillary sequencing 53768355 PD4198a 8 64991523 64991523 ATCAAAAAATAATGAACTATTGATT C - TTTTGTTGTGAATTCATTCTACTCC deletion Somatic Roche 454 pyro-sequencing 53437119 PD4198a 18 66655458 66655458 GGAATACTATGCAGCCATAAAAGGG A - AAAAAAAACATGTTTTTTGCAGCAA deletion homo_sapiens_core_58_37c CCDC102B ENSG00000150636 CCDS11996.2 ENST00000319445 Somatic Capillary sequencing 54033795 PD4198a 2 50944406 50944406 TTAAACATTATAATAACACTACATC A - AATTCTAATTATCAAGGGAGGACTC deletion homo_sapiens_core_58_37c NRXN1 ENSG00000179915 CCDS46282.1 ENST00000404971 Somatic Roche 454 pyro-sequencing 53697671 PD4198a 17 17335659 17335683 GGTGTCTGGAATTTACTTTAAAAAA TTTCAGTTTTTTGTGGGGGGAGGGG - AAGTGGAATAAATGAAGTAATATTG deletion Somatic Roche 454 pyro-sequencing 53475129 PD4198a 21 17556618 17556620 AATCCCAGCTACTCGGGAGGCTGAG GCT - GGAGAATCGCTTGAACCCAGGCGGT deletion homo_sapiens_core_58_37c ENSG00000236553 ENSG00000236553 ENST00000425334 Somatic Roche 454 pyro-sequencing 53583137 PD4198a 1 239178691 239178691 CTATTATTTACTGTCTAAATCCATT A - AAAAAAATTCTAGAGATTTAGAGGG deletion Somatic Capillary sequencing 53666687 PD4198a 3 190728247 190728248 ATAGATAGATTTCTTAATTTGGACA - A AAAAAAAACACTAAGCATAATGGAA insertion Somatic Capillary sequencing 53467545 PD4198a 16 78156312 78156312 TACAAACTATTGTTTAATGACAAAG T - GGGTCAAACCCATAATTAAAAAAAT deletion homo_sapiens_core_58_37c WWOX ENSG00000186153 CCDS42196.1 ENST00000408984 Somatic Roche 454 pyro-sequencing 53464267 PD4198a 16 53241460 53241461 TCATTTCTGTATTTTCAAAATAACA CT - GTTAGCTTTTTGTTAGAAAAATTAT deletion homo_sapiens_core_58_37c CHD9 ENSG00000177200 CCDS45485.1 ENST00000398510 Somatic Roche 454 pyro-sequencing 53652491 PD4198a 3 184752891 184752891 TCAAGCTCTAAAATGAATCAGTAAT A - AAAAAACCCACCAACCAAAAAAAGT deletion homo_sapiens_core_58_37c VPS8 ENSG00000156931 CCDS46971.1 ENST00000437079 Somatic Capillary sequencing 53784931 PD4198a 8 91225896 91225897 GGGTTTCTTACCAGTTAAAGAAGTC - T TTTTTTTCAGTCTCAAAAGTGAAAG insertion Somatic Capillary sequencing 53520125 PD4198a 2 197620790 197620833 CAATTATGTAGTCAATTTTAGAATA AGTGTGATGTGGTGCTGAGAAGAATGTATATTCTGTTGATTTGG - AGCGGAGAGTACTGTAGATGTCTAT deletion Somatic Roche 454 pyro-sequencing 54123257 PD4198a 17 56080428 56080429 GCTGATGTTAACATTTAATACTTAC - T TTTTTTGAGATGAGTTTCATTGAGA insertion homo_sapiens_core_58_37c SFRS1 ENSG00000136450 CCDS11600.1 ENST00000258962 c.? p.? Somatic Capillary sequencing 53687723 PD4198a 10 89561097 89561098 CAAATGATAAATTATGTCTTTTTTT - T ACCTAATTAATTCTTTAAGACATTA insertion homo_sapiens_core_58_37c ATAD1 ENSG00000138138 CCDS7386.1 ENST00000308448 Somatic Capillary sequencing 54037172 PD4198a 2 78799218 78799218 GCCAAGAATACTAAAAAAGAAAATG T - TGGCAAATAAGAGAAGAAAGAGAGG deletion Somatic Roche 454 pyro-sequencing 53814687 PD4198a 18 6641784 6641784 TTTTAAAACCACCAGTCAGGTTTCC A - AAATGGCTGTACAATTTCGTCTCTC deletion Somatic Roche 454 pyro-sequencing 53770386 PD4198a 8 80025540 80025540 ATTGGTGAAATTAACAAATGTGATT A - AAAAAAAATGTGTGACAAAATATAT deletion Somatic Capillary sequencing 54104090 PD4198a 22 36244598 36244621 AGAGAGCTTACCCAACAGGCCCAAT CCAAAATAGCTTGGGCCTTTAGGC - CCAAAATACCTAATAAGATGTACTA deletion homo_sapiens_core_58_37c RBM9 ENSG00000100320 CCDS43013.1 ENST00000438146 Somatic Capillary sequencing 53938455 PD4198a 6 82447946 82447947 TCTATTCTTACTCAAAATATAACAA AC - AGATCCAGTCTTTGTGCTCTATGTC deletion homo_sapiens_core_58_37c FAM46A ENSG00000112773 ENST00000412306 Somatic Roche 454 pyro-sequencing 53774490 PD4198a 8 109579155 109579157 ATTTAAATGTGGTATGTTTATTCAG TTC - TTCTTTTTTGATAGTTAAAAGTGCT deletion Somatic Roche 454 pyro-sequencing 53816893 PD4198a 18 3595389 3595390 TCTGGACTTCTATTGAAGTTTGGCA - CAG AAGTTAAACAGGAAGTTGAAGGCTA insertion homo_sapiens_core_58_37c DLGAP1 ENSG00000170579 CCDS11836.1 ENST00000315677 Somatic Roche 454 pyro-sequencing 53775078 PD4198a 8 114240738 114240740 GTACATTCCCTATACTGGAAAAGAT ATC - ATACTCACAGAATGCCATGAAAAGG deletion homo_sapiens_core_58_37c CSMD3 ENSG00000164796 CCDS6315.1 ENST00000297405 Somatic Roche 454 pyro-sequencing 53733922 PD4198a 6 18761025 18761026 AACTTATTTGAGACAAAAATAAAAA - A TTACCCCAAGGTTTCTGCTCTTATA insertion Somatic Capillary sequencing 54138232 PD4198a 5 6077932 6077932 ACTGTAGTGTTGGATAAAATATATT A - AAAAATTGAATTATAATTTACAGGC deletion Somatic Capillary sequencing 53943782 PD4198a 6 123545799 123545799 GAAAAAGGTACCAAGAATAAACAAT G - GGGGAAAGATAGTCTCTTCAATATA deletion homo_sapiens_core_58_37c TRDN ENSG00000186439 ENST00000334268 Somatic Roche 454 pyro-sequencing 53537689 PD4198a 2 186678126 186678127 TTATTTGTCTTTATTTCTTTTAAAA - A ATTGCTAATATATAATTAAGTGATA insertion homo_sapiens_core_58_37c FSIP2 ENSG00000188738 ENST00000424728 Somatic Capillary sequencing 53913807 PD4198a 14 36601691 36601691 ATTGGGATATCCATCACCTCGAACA T - TTTTTTTTGTGTTGGGAACATTATA deletion Somatic Capillary sequencing 53652151 PD4198a 3 182239726 182239728 TCATCTGTTAAGTGGAGATAAAAAT ATA - ATAACAGTTACCTATCTCATAGGAT deletion Somatic Roche 454 pyro-sequencing 54102922 PD4198a 22 29194282 29194306 ACTTCACCAACTCTCTGTCCTAACT TAGATTAACTTTTTTTTTTTTTTTG - AGACAGGGTTTTTGCTCTGTCGCCC deletion homo_sapiens_core_58_37c XBP1 ENSG00000100219 CCDS13847.1 ENST00000216037 Somatic Roche 454 pyro-sequencing 53711615 PD4198a 19 28811602 28811602 ACACACAGAAAGCCACCAGACAGAT G - AAAAAATGCTCAACATCACTAATCA deletion Somatic Roche 454 pyro-sequencing 53964753 PD4198a 5 57785962 57785965 ACCTCCACTGTCCCTGTCCATAATC CTGT - CTTTCTTAGGCATTATCACTTTGAT deletion Somatic Roche 454 pyro-sequencing 53957989 PD4198a 6 122308405 122308406 CCGTCTCTACTAAAAATACAAAAAA - A TAGCCGGGCGTGGTGGCAGGCGCCT insertion Somatic Capillary sequencing 53579227 PD4198a 1 213257320 213257320 CTTTATGGTGAGAACACTCAGGCAG C - CTGTGGAGATGAGGGATGTTTCAAA deletion homo_sapiens_core_58_37c RPS6KC1 ENSG00000136643 CCDS1513.1 ENST00000366960 Somatic Roche 454 pyro-sequencing 53874794 PD4198a 16 14909919 14909922 CTTTCCTAAGGAAACTACATCTGAA ACAC - ACACAGAAAATGTATGCTTAAAGCA deletion Somatic Roche 454 pyro-sequencing 54124635 PD4198a 17 67843352 67843353 TTTACTAAGAGCATAATAATATTTT - T TTATACTATATTAATAATAATATTT insertion Somatic Capillary sequencing 53648529 PD4198a 3 154864610 154864610 AAATATTACTTCTTCTAAAAAATTG A - AAAAAAAAGCTTTGAGAGAAAAAGT deletion homo_sapiens_core_58_37c MME ENSG00000196549 CCDS3172.1 ENST00000460393 Somatic Capillary sequencing 53723515 PD4198a 6 15324646 15324646 TTTGCATGTCATCTTTATACGGGGG C - CGTGTTATCTTCTGTGTAATGTTCC deletion homo_sapiens_core_58_37c JARID2 ENSG00000008083 CCDS4533.1 ENST00000341776 Somatic Roche 454 pyro-sequencing 53574553 PD4198a 1 181273989 181273990 TGTTTGACTTGGCAAGAGTTCACTC TT - TTATACCAGAAGCGGAACTTCTCTT deletion Somatic Roche 454 pyro-sequencing 53840483 PD4198a 19 8785331 8785331 GGGGTTGGGAATCTAATAACTTTGA T - TTTTTTTCTCTACCCCCAATTACCA deletion Somatic Capillary sequencing 54052882 PD4198a 4 69220081 69220081 GTTCAAGGTTCTTACTGCAATAAAA T - TTTTTTTAAAAAACCTCAATAATTA deletion Somatic Capillary sequencing 53656253 PD4198a 3 103542384 103542385 AAGTATATTTTGGAGCCTTTTTTTT - T ACCAAATAGAAGTTATATTTTAATT insertion Somatic Capillary sequencing 53548937 PD4198a 3 31463597 31463597 TGGCAATAGCTAACTATGCATCAAG A - AACTTATCCACCCCAGAGGAGATTC deletion Somatic Roche 454 pyro-sequencing 54141725 PD4198a 5 29483082 29483082 AGAATTTAAAGAAACCAACAATGGT A - AAAAAGGACAAAGAAGGACATCACA deletion Somatic Capillary sequencing 53660059 PD4198a 3 134848873 134848874 CAACCATTTTGGATAGTCAGGAAGC - G GGGGGAAATTGTGCAGAAGAACGCT insertion homo_sapiens_core_58_37c EPHB1 ENSG00000154928 CCDS46921.1 ENST00000398015 Somatic Capillary sequencing 53397374 PD4198a 20 9643424 9643424 GGGCATTACTCTAATATACTTATCA T - TTTTTTTTCTGATAACAACACTATG deletion homo_sapiens_core_58_37c PAK7 ENSG00000101349 CCDS13107.1 ENST00000378429 Somatic Capillary sequencing 53965425 PD4198a 5 63358411 63358411 CTAGCTAGACCAAATCTCATAAGAT C - CCAACAAGCTCCAGGCACCAGGGTT deletion Somatic Roche 454 pyro-sequencing 53482590 PD4198a 21 26038581 26038582 CTTAATAGTGCCATAACAGGAGAGC - A AAAAAAATACCCAGACTATGAATAG insertion Somatic Capillary sequencing 21352117 PD4116a 18 48822760 48822760 TCCCCATTCCATTATTTCTCTTATG A - AAAAAAAATCTTCTTTGTCTAATAA deletion Somatic Capillary sequencing 21947957 PD4116a 8 60154306 60154306 ATAGGTTAATTATGTGTCATCCCTG T - TTTGAAAGTTAGCCCTAGAATCTGG deletion Somatic Roche 454 pyro-sequencing 21517765 PD4116a 12 32906494 32906494 AGGAGAAATCATTTCTTAAGAGGAT C - TTTAAAGTCATATTTGTGAGAGAAG deletion homo_sapiens_core_58_37c YARS2 ENSG00000139131 CCDS31770.1 ENST00000324868 Somatic Roche 454 pyro-sequencing 21800901 PD4116a 4 81063631 81063631 TACTAACAATTTCTAGGACATGAAA G - GCAATCAGGTGAGTAAAGCTCACCA deletion Somatic Roche 454 pyro-sequencing 21761719 PD4116a X 80176075 80176075 TCATGTTATTTCATTGTACTTTAAA C - AAAATTAGTGTTTTAATTTGTTCTA deletion Somatic Capillary sequencing 21397080 PD4116a 5 38308494 38308494 GTGACTTCTGCTCATGAGACCCTCC G - CATGCTGAAGGCTGGGATGTACCAA deletion homo_sapiens_core_58_37c EGFLAM ENSG00000164318 CCDS3924.1 ENST00000322350 Somatic Capillary sequencing 21571005 PD4116a 16 71466812 71466815 AGTAGGAAGCTACAACACATGGAGA GAGG - GAGGGAGGAGACAGAGTGTGAGCCA deletion Somatic Roche 454 pyro-sequencing 21647530 PD4116a 12 39947577 39947582 TTCTGAAAAGTCAGATCATATACTT CCTTAA AATAT TGCTAAAATCTTATAAAACATGTCT complex Somatic Capillary sequencing 21404237 PD4116a 11 56048633 56048633 ACATGAACAAAAGTGGAAAATTTTT A - AACAAAATTATGAGCGGTCATTGTT deletion Somatic Roche 454 pyro-sequencing 21760956 PD4116a X 72472077 72472086 TAATATTAGTTATTGACTAATAATT AGTCAATAAG - AGTTTCCTTGGGATGATATATTTCT deletion Somatic Roche 454 pyro-sequencing 21584003 PD4116a 20 60106978 60107003 TAGTAAAGTGAGGATTATCCAGGAT TTTAAAGTTTGTTCTTATCTTCTGCG AATC CTGCTCAAGTGAGGAAACGAGGTGG complex Somatic Roche 454 pyro-sequencing 21403050 PD4116a 5 35139117 35139118 GTACAAAAAATAAGGAAAGAAAAAA - A ACATAGCTTTTTGAAATTTGATATG insertion homo_sapiens_core_58_37c PRLR ENSG00000113494 CCDS3909.1 ENST00000382002 Somatic Capillary sequencing 21707186 PD4116a 3 118580303 118580339 TTGATTTTTACACCCCACAAATAAG TAAGACATTTTATGTTTGTCTTTCTGTTCCTGCCTTG ACATTTTATGTTTGTCTTTCTGTTCCTGCCTTGA TTTCACTTGTAATAATCTCCAGTTC complex Somatic Capillary sequencing 21537668 PD4116a 20 11845351 11845352 TTCAACATTCAAACATATCGTAATT - G TCACAACTTAAAAATGTTTTCTGGG insertion Somatic Roche 454 pyro-sequencing 21968247 PD4116a 8 132118036 132118037 TCAAAGTATGGAGATAATTTGCATA - TTTGCATAATTTGCATAA ACATACATATTAAATATGAAAAGGA insertion Somatic Capillary sequencing 21663365 PD4116a 2 134797571 134797572 AAGCTGTACCTTTGCCCCTTTTAGC CA - CAGCTGGAGCTGGAGCAGCTGGGAC deletion Somatic Roche 454 pyro-sequencing 21738299 PD4116a 2 3933322 3933322 TCTAGTAAATAAAAAGTCATTTCTG T - TTTCCTGCTTACAGATCCTAGACTA deletion Somatic Roche 454 pyro-sequencing 21946888 PD4116a 8 51551063 51551063 GTGAAAAATCAAGAAGTAGAGTTAC A - AAAATTTTTTCTATAGCACTGGGTG deletion homo_sapiens_core_58_37c SNTG1 ENSG00000147481 CCDS6147.1 ENST00000338349 Somatic Roche 454 pyro-sequencing 21759769 PD4116a 2 89888036 89888037 TGCCTGTAGAAATCCTCCCTCATTC - TTCA ATGACCATGATTCAGATGAGAGACA insertion Somatic Roche 454 pyro-sequencing 21784386 PD4116a 10 1765805 1765819 TGGGAAAAGAACTGTCAGCGAGAAG TGAGAACGGTCCGCT - TGCCACCTGCACAGGGGACAGCAGC deletion homo_sapiens_core_58_37c ADARB2 ENSG00000185736 CCDS7058.1 ENST00000381312 Somatic Roche 454 pyro-sequencing 21527079 PD4116a 19 20851569 20851602 GGGTTTCGAGACCAGCCTGCCCAAC ATGGCGAAACCCCGTCTCTACTAGAAATACAAAA - ATTAGCCGGGTGCTGTGGCACATGC deletion Somatic Capillary sequencing 21726978 PD4116a 11 19712377 19712377 CTGGATGGGGAACTGGCCCCAGAGA G - GGGCCAGTGGCTTACCCAAAGTCAC deletion Somatic Roche 454 pyro-sequencing 21394787 PD4116a 5 22925319 22925332 AAGATATCCAAAAACTCTTGCGGGA TGAAAAACTTATAT - TGAAAATACCCATAGAGGGGCTGTG deletion Somatic Capillary sequencing 21394312 PD4116a 5 20215179 20215179 TTCAAAAGAAGACATGCATGTGGCC A - ACAAACATATAAAAAAAGCTCAACA deletion homo_sapiens_core_58_37c CDH18 ENSG00000145526 CCDS3652.1 ENST00000507958 Somatic Roche 454 pyro-sequencing 21348676 PD4116a 18 20100863 20100863 ACCCAATGGTATTTGGCAATGAAAA G - TTTTATACAGGAACTGTTGGCTCCC deletion Somatic Roche 454 pyro-sequencing 21727814 PD4116a 11 24873142 24873146 TTTCTTTTGTTGTTGTTGTAACTCT GATAG - GTTTTGGTACCAGGATGATGCTGGC deletion homo_sapiens_core_58_37c LUZP2 ENSG00000187398 CCDS31446.1 ENST00000336930 Somatic Roche 454 pyro-sequencing 21707524 PD4116a 3 189052132 189052139 TCGACAAATGCTTACCTATGGGTAA AGAATCAT CATAAAA CTAACATTAAACTAACATTTACCAA complex Somatic Capillary sequencing 21279520 PD4116a 7 28408673 28408676 AGTGAGACCTTGCCTCAAAAAAACA AAAC - AAACAAACAAACAAACAAAATAAAT deletion homo_sapiens_core_58_37c CREB5 ENSG00000146592 CCDS43562.1 ENST00000396299 Somatic Capillary sequencing 21644695 PD4116a 12 114699164 114699164 CTCTCCTTCTCAAAGGATCTGCTGA C - CCAAAAACCACCTCAAGCCCACAGC deletion Somatic Roche 454 pyro-sequencing 21558305 PD4116a 15 85646827 85646828 ATTCTTCAGCAGAAAAGGAGTTTTT - T TGGAAGGAAATAGGGTTGCTTATAG insertion homo_sapiens_core_58_37c PDE8A ENSG00000073417 CCDS10336.1 ENST00000310298 Somatic Capillary sequencing 21487996 PD4116a 9 121694635 121694635 AAATACTTGTGTCAATTTAGTGCCG C - CTTCTCTAAAAAACTTCCATGAATA deletion Somatic Roche 454 pyro-sequencing 21280291 PD4116a 7 33853303 33853335 AACCCTCTGGAAGAGTTTCATTGAG CCTTTGAGAATGAACAGTTGTTCCACCTCAAAT - CCTTTGTAGAATGAGGTGGACTATA deletion Somatic Roche 454 pyro-sequencing 21842532 PD4116a 16 24828566 24828567 GATTTTATCATCCCTTAGTATGGCA - T TATATATATTAATTTAATAAGTTAA insertion homo_sapiens_core_58_37c TNRC6A ENSG00000090905 CCDS10624.2 ENST00000395799 Somatic Roche 454 pyro-sequencing 21306144 PD4116a 1 236258932 236258946 ATCTGAGACCTTGCTGAGCCAAGAG GGGCTGCCCCTCCCA - GGCGGGGTAAGCTAATTCCCAGAGA deletion Somatic Roche 454 pyro-sequencing 21281750 PD4116a 7 45620312 45620322 AGAGTAGTGGGGCGAGTCCCGCAAA GGCCCAAGTGG - GGCAAAACCACACTGTGGACTTGCC deletion homo_sapiens_core_58_37c ADCY1 ENSG00000164742 CCDS34631.1 ENST00000297323 Somatic Roche 454 pyro-sequencing 21438578 PD4116a 14 57641008 57641020 TACAAGTAGTATATTCCTTTATCAG AGAAGTAAACAAA - AGTACAAAATATCTTTGTGATTCAA deletion Somatic Roche 454 pyro-sequencing 21329229 PD4116a 10 77570275 77570275 CCAAAGATGACATCTAGATTCTGGC T - TTGAACCCCTGAGTTGAACCTCATG deletion homo_sapiens_core_58_37c C10orf11 ENSG00000148655 CCDS7351.1 ENST00000372499 Somatic Capillary sequencing 21671114 PD4116a 2 201084235 201084253 TTTGATGAGAAAAGGGTTACAAAGA GCCAAACAGATAGTTTTTG - GCCCTGGAGGAGGAAAAATTGTCTG deletion Somatic Roche 454 pyro-sequencing 21705247 PD4116a 3 186201437 186201437 TAAGGCTTTTGTCATTCACTGATAA T - TTTTGTTTTACTCTGATTCTTCTCT deletion Somatic Roche 454 pyro-sequencing 21635550 PD4116a 12 43470155 43470162 CCTTAAACTGTGCTTTGAAACTTTG TTTCCCTC - TCTTTCCCAGCAGACACTCCCATGC deletion Somatic Capillary sequencing 21380145 PD4116a 5 60817929 60817930 CCTGTTTTTTTTGTTTGTTTTTTTT - T TTTTTTGTTTTTTTTTAGCTTCTCC insertion homo_sapiens_core_58_37c ZSWIM6 ENSG00000130449 CCDS47215.1 ENST00000252744 Somatic Capillary sequencing 21664438 PD4116a 2 143185165 143185165 TATTTAATCTTATAATCATGCTTTA T - TATTTTAAGTGTTTCCATTACATTT deletion Somatic Capillary sequencing 21710677 PD4116a 3 119483484 119483485 TACAAACAAATACATATATATATAT - TA ATTATGCCTGCAGTATACAGAGAAT insertion homo_sapiens_core_58_37c C3orf15 ENSG00000183833 CCDS2994.1 ENST00000273390 Somatic Roche 454 pyro-sequencing 21989248 PD4116a 6 123998273 123998274 GTTTAATACTTATGAAAGAAAAAAA - A ATGGCATTTTTCTGGCAGTTAATAT insertion Somatic Capillary sequencing 21695942 PD4116a 3 116922154 116922174 ATGCCTGGCTAATTTTTTGTATTTT TAGTAGAGACGGGATTTCACC - ATGTTAGCCAGGATGGTCTTGATCT deletion Somatic Capillary sequencing 21693288 PD4116a 3 97320921 97320921 ACTTTCTCTAGTGTCTTCCCCAGAG T - TTTTGCAAAAGCATATAACATTGCT deletion homo_sapiens_core_58_37c EPHA6 ENSG00000080224 CCDS46876.1 ENST00000389672 Somatic Roche 454 pyro-sequencing 21327837 PD4116a 10 68682929 68682941 ATGCAGTAAGATAAGATCAGGAACC AAGATAAAAGAAA - AATGTCTGAAAACTAAGAGCAATGT deletion homo_sapiens_core_58_37c CTNNA3 ENSG00000183230 CCDS7269.1 ENST00000433211 Somatic Roche 454 pyro-sequencing 21367774 PD4116a 5 85100397 85100397 AAAATTGGCAGAAAATATAAATCAC A - AAAATGTCATTTTATATCATATGCT deletion Somatic Capillary sequencing 21324789 PD4116a 10 50796681 50796681 ATGGCAAAAGGTGGGAACAACCTAA A - TGTCCATCAATGGATGATAGATAAA deletion Somatic Capillary sequencing 21835345 PD4116a 16 13516956 13516962 TAAAATGAGAGGAAGGAGCTTGATC AGCTTTA - AGTTTTATGAGTCAGTGACTTGAAG deletion Somatic Roche 454 pyro-sequencing 21325028 PD4116a 10 52804093 52804093 GACCTTGCTTTCACGGAAGAGTTTT G - GTAAAGATATTCCTGTGGATATGGG deletion homo_sapiens_core_58_37c PRKG1 ENSG00000185532 CCDS44399.1 ENST00000401604 Somatic Capillary sequencing 21908060 PD4116a 6 22405967 22405967 TGACTCTTGAACAACGTGGGGATTA G - GGGCACTGATCCCCTGTGCAGTCAA deletion Somatic Capillary sequencing 21776835 PD4116a 22 33611153 33611169 ACCTTGATTTTCTCTCCAAAATGTG CTTCTTTCTTTATATCC - CTTGTAAGCTGTATTCCTAGGTATA deletion homo_sapiens_core_58_37c LARGE ENSG00000133424 ENST00000452586 Somatic Capillary sequencing 21798576 PD4116a 4 64976496 64976515 TTTGTGGTTCAAAAGAAACTGAATG TTTAAAGTGCTCATCTTTTT - TTCTCTTCTTCAGTACAACCAGTCT deletion Somatic Capillary sequencing 21743414 PD4116a 2 43559347 43559347 TCAAACAATTCTTGTGCCTCAGCCT C - CCAAGAAGCTGGGATTACAGGCCCA deletion homo_sapiens_core_58_37c THADA ENSG00000115970 CCDS46268.1 ENST00000405006 Somatic Roche 454 pyro-sequencing 21698349 PD4116a 3 134459249 134459266 CCGCTTCCCGGGTTCACACTATTCT CCTGCCTCAGCCTCCCGA - GTAGCAGGGACTACAGGCACCCATT deletion homo_sapiens_core_58_37c EPHB1 ENSG00000154928 ENST00000460895 Somatic Capillary sequencing 21483534 PD4116a 9 83658250 83658251 GTAAGATAAATAAACCTTCTTACCT CA - CACGACTATTTTAAAGACCCAAAGA deletion Somatic Capillary sequencing 21360362 PD4116a 18 53140125 53140126 CCTTCTAAAGATATATCACAGAGTG - A AGAAATAAAAGGTAGATACTTTAGA insertion homo_sapiens_core_58_37c TCF4 ENSG00000196628 CCDS42438.1 ENST00000354452 Somatic Capillary sequencing 21318319 PD4116a 1 212822751 212822752 GGTGGAGGGATAGAAGTATACAGAA - TATACAGAAG TAATTTTAAAAATAATTCACTATGG insertion Somatic Roche 454 pyro-sequencing 21602176 PD4116a 3 17345904 17345905 GAAGATATTTTCTCTTTTCATAGAT - T TTTTTTTGTTTAGACAGGGTCTTGC insertion homo_sapiens_core_58_37c TBC1D5 ENSG00000131374 CCDS33714.1 ENST00000253692 Somatic Capillary sequencing 21956659 PD4116a 8 129107829 129107841 TTATTGGAACACAGCTATGCCCATT TCTTTACATATTG - TCTGTGACTGCTTTCCTGCTATAGT deletion homo_sapiens_core_58_37c PVT1 ENSG00000249859 CCDS3617.1 ENST00000504719 Somatic Roche 454 pyro-sequencing 21798649 PD4116a 4 65343333 65343333 TTAAACACTTTTATTCATATGTACA T - TTTTCCATCCAACTCTAGTTCATGA deletion Somatic Capillary sequencing 21897956 PD4116a 9 30406074 30406074 AAGAAATAATAGCCTGCTGTAAGAC T - TTAAACATAGTTTTCCATAATGTGA deletion Somatic Capillary sequencing 21947808 PD4116a 8 58628785 58628799 TCTCTCCTGGCCATCCATGTTATCC ATGGCCTCTAGATTA - ATCTTTCTGAAGTACATATCTTGAT deletion Somatic Roche 454 pyro-sequencing 21325215 PD4116a 10 54156839 54156845 CAATATTAAAGAGTCATTTTATTTA AGTTTGT - AGTTGCGAGCTCAACTACTGAAACT deletion Somatic Capillary sequencing 21749039 PD4116a 2 89887262 89887286 TGATGCTCAGGTAGGGAACAGGCCT CTGTGTGTCTCAGCCTCATCCATAA - CAGTGTGGGTTTGCACTGTCTGGAC deletion Somatic Capillary sequencing 21946976 PD4116a 8 52082868 52082868 ACATGGGGAGACCCTGTTTCTATTT A - AAATTTTTTCTTAAATAGTCAGGTG deletion Somatic Roche 454 pyro-sequencing 21675269 PD4116a 2 231342226 231342226 ATATGTAATCTACAGGGGGTTTGCC T - TTCTGTGTAAGTGAGGTGGGAATTT deletion homo_sapiens_core_58_37c SP100 ENSG00000067066 CCDS2477.1 ENST00000264052 Somatic Capillary sequencing 21974179 PD4116a 6 97366728 97366728 GGGGCAGGAGAGGATATAGTAAAAG A - AAATATTAAAAGGAAGTAATAAAAT deletion Somatic Capillary sequencing 21580420 PD4116a 20 38275739 38275752 TCAGCAAGAACACCTGGCTTGTGCT CTGAAACAATTAGC - CTGACTTGGGTTGCATTGGATTTTG deletion Somatic Roche 454 pyro-sequencing 21917543 PD4116a 6 25540170 25540171 TAAAGAGGTTATTTTTTATTTCTCT - A CAGTTGTTACCAAATTTATACCATG insertion homo_sapiens_core_58_37c LRRC16A ENSG00000079691 ENST00000329474 c.2197-5_2197-4insA p.? Somatic Roche 454 pyro-sequencing 21946794 PD4116a 8 50832311 50832311 CAGTTATTTTTTCTATATTTGGTGA C - TTTTTTCAGTAGTTTTAAATGATAT deletion Somatic Capillary sequencing 21935698 PD4116a 17 58134675 58134686 TTACCGAGTCCAGAAGAACATGGCT GTTGCAGAAGTA - GTTGGACTTCAGGTAAAGGTGCGTG deletion homo_sapiens_core_58_37c HEATR6 ENSG00000068097 CCDS11623.1 ENST00000184956 c.1802_1813delTACTTCTGCAAC p.L601_Q604delLLLQ Somatic Roche 454 pyro-sequencing 21708180 PD4116a 3 99506968 99506969 CCCCATACCACTTTGACCACCAAAA - A ATCCTCAGGGACAGGAGAAAAATTA insertion homo_sapiens_core_58_37c COL8A1 ENSG00000144810 CCDS2934.1 ENST00000261037 Somatic Roche 454 pyro-sequencing 21698719 PD4116a 3 137413224 137413229 TTAAAAGGCAGTGTATTCAGCAGCA TGGGGC - TTCCCCACCCCTACCCAACTCCCAA deletion Somatic Roche 454 pyro-sequencing 21695001 PD4116a 3 109560052 109560073 TTTGTTCACGTTAAAAAAAAAACTA GATAAGGAAAAAATTATTTGTT - GTCAAATTAGTTACTTTTTATTTTT deletion Somatic Capillary sequencing 21712718 PD4116a 3 137453316 137453317 TGCTAGTTGTGGCCTGAATACCTTG - A GTTTTTTTTCATTATGTTATATTTT insertion Somatic Capillary sequencing 21748148 PD4116a 2 82245204 82245204 TTCCCAACTAATGTTAATTTTTTTA T - TTCAATTGATCTGTGCTCCTACCCA deletion Somatic Roche 454 pyro-sequencing 21407988 PD4116a 11 84323037 84323039 ACAACCTATTTAAAGTGTACAATTT AGA - AGTTTTGAGCCATGCCAACATCTAT deletion homo_sapiens_core_58_37c DLG2 ENSG00000150672 CCDS41696.1 ENST00000398309 Somatic Capillary sequencing 21950610 PD4116a 8 83630841 83630841 CATATTTCAGAACAACACATTATAC A - AAATAAACATATAAAATTTTTGTCA deletion Somatic Capillary sequencing 21926988 PD4116a 19 29306071 29306110 GGTAGGAACTCAGCATGGCAGCTCT GCCCCTGCAGCAGGTTTCTGCCTGGGCCTGAATGCTTTCT A ATGACAGGTTTTGGAATCTAGATGG complex Somatic Roche 454 pyro-sequencing 21434213 PD4116a 14 25739988 25739991 ATCTGAGATGCACAGTGTCTTAGTC TGTT - TGTGTCGCTATAACAAAATGTCTGA deletion Somatic Capillary sequencing 21617259 PD4116a 13 77184484 77184484 AAATTCCCTGGCTCAAGTCTTTTCT C - CCAAAGGTAGACTATGTTGTGGACA deletion Somatic Roche 454 pyro-sequencing 21956762 PD4116a 8 129793052 129793052 ACAGAGATCCCAAAGGCAGTAACAA G - TAAAGGTCAAGAGTATAATGAAAGC deletion Somatic Roche 454 pyro-sequencing 21834096 PD4116a 16 6882096 6882099 ACCATTTGTAGACAAAACTGAATGC TATT - TATTATGTTAGGATAAAACTTTTTC deletion Somatic Roche 454 pyro-sequencing 21281975 PD4116a 7 47196615 47196615 ATATATAGCGATTAAAAATATGATT A - AAGTATTTAGCAGCTAGTCATTGAG deletion Somatic Capillary sequencing 21935510 PD4116a 17 57117576 57117592 GTCACCAAGACTGGTAGAGAAGTAA CATGATTAGATATTAAT - CAGAAAGAAAAAAACACCCTCATTC deletion homo_sapiens_core_58_37c TRIM37 ENSG00000108395 CCDS32694.1 ENST00000262294 Somatic Capillary sequencing 21540073 PD4116a 15 23840229 23840229 CTGAGCTATGAATCTGAGAAGTTTT A - AAAAGAAGTAGATTATAGAATCAAA deletion Somatic Capillary sequencing 21640145 PD4116a 12 78196624 78196624 TGCCTGGCTAATTTTGTTTTTTGTA T - TTTTAGTAGAGATGGGGTTTCACCA deletion Somatic Capillary sequencing 21602154 PD4116a 3 17136490 17136491 CCTGAGAAAGCGGTATTTGAGTTGA - T CCTGAAGGCAAAGATGCTCTCCCTA insertion Somatic Roche 454 pyro-sequencing 21283006 PD4116a 7 54049917 54049917 TGATTTAACTTTTCCCTTCCCTTTT C - TTTATTTTTCTTACCTAATTTCTCT deletion Somatic Capillary sequencing 21977784 PD4116a 6 130142654 130142673 TGGGAGAAAAATCAGATGTGTCCTT TGCTTTTATATTTCCCATAG - TGCCTAGCATGATATCCCAGAACCT deletion Somatic Roche 454 pyro-sequencing 21927059 PD4116a 19 42178637 42178683 TTAGTGATGCCACAGGAGAAAATGG GATTGAAGGAGCTAGAAGAATCCAGTCCAGTCTGCAGGTGGATAATA CATCCAGTCCAGTCTGCAGGTGGATAAT AAAACTTGAAAACAAAATACAGGGC complex Somatic Roche 454 pyro-sequencing 21290907 PD4116a 7 52520721 52520722 TGCACACCACTGTGCCTGGCTAATT - AT TTTTTGTATTTTTAGTAGAGACGAG insertion Somatic Capillary sequencing 21936510 PD4116a 17 64062602 64062604 GCTGTATCCCAATGAGGCTAGAGTT AAG - AAGAGGGAGTGAAAGCAACATACTC deletion homo_sapiens_core_58_37c CCDC46 ENSG00000154240 CCDS32710.1 ENST00000392769 Somatic Roche 454 pyro-sequencing 21457768 PD4116a 7 77435131 77435153 TTATTGAGACTTGTTTTATGGCCCA GATTATGGTCTGCTTTGGCAAAT - GATTCATTCACACTTGAAAAGAATA deletion homo_sapiens_core_58_37c PHTF2 ENSG00000006576 CCDS47622.1 ENST00000307305 Somatic Capillary sequencing 21915297 PD4116a 6 8042549 8042550 TCTGATTCCCTTTCTTTTCTCAAAA - A AAAATGGGTAGTAAAAGTAATATGT insertion homo_sapiens_core_58_37c MUTED ENSG00000188428 CCDS4506.1 ENST00000397457 Somatic Roche 454 pyro-sequencing 21801024 PD4116a 4 82090938 82090968 TTGGTAATAGCTTTAGAAAATTCAA GAAAACAATAAAACACTTAGTACAACATTGT - GAAAACATTCCAAAATATAAATCGA deletion homo_sapiens_core_58_37c PRKG2 ENSG00000138669 CCDS3589.1 ENST00000395578 Somatic Roche 454 pyro-sequencing 21277248 PD4116a 7 12966926 12966967 TTTTACAAGCCCAGTTCAACATAGA ATATATTGAGTTTAATGCCATGTAGCCTCCAGCAGGCATTAG - GCACTTGGACCAGTGGGACAATACT deletion Somatic Capillary sequencing 21957798 PD4116a 8 137850538 137850552 CAGCAGAAACTTGCTCAGTAACATA CTTCTAACAAATTGC - CTTTCCTTTCCCACCTCCTTCTCTA deletion Somatic Roche 454 pyro-sequencing 21725390 PD4116a 11 7131763 7131763 TCCAGCTCTGAACTTCTTTCTTCTA C - TTGTTCTAGTCTATTGTGGAAACTT deletion Somatic Capillary sequencing 21395529 PD4116a 5 28061893 28061916 AATTTTTTGAAATTAAAATTCTGAA AAAGTCATTTGTTCAGGATATTGT - AAAGGATGCCTAAGGCCAAGTGTTT deletion Somatic Capillary sequencing 21858190 PD4116a 1 121348955 121348955 TTTCAGTATAATGTGAAAAATGCTA T - TTTTTTTTGAAATGAATGATCTCTG deletion Somatic Capillary sequencing 21581252 PD4116a 20 45665028 45665028 AATAAAGACAGACTCCTGCTGTTTG T - TTAGTGACCCAGCAATATTGTGGAA deletion homo_sapiens_core_58_37c EYA2 ENSG00000064655 CCDS13403.1 ENST00000327619 Somatic Roche 454 pyro-sequencing 21620504 PD4116a 13 100365119 100365119 CACCATAATCCTGGCGTTTGCTCTG T - TTGTACTCTGTATTTCCAGTATCTG deletion homo_sapiens_core_58_37c CLYBL ENSG00000125246 ENST00000376360 Somatic Roche 454 pyro-sequencing 21396089 PD4116a 5 31567494 31567531 AAGTTCAACAAGGTGGCTTAGATAG CAGATGGACATTCATAAATTAGTAGTTTTGTGATACAC - CAGTGATATGGTTTGGCTGTGTCCC deletion Somatic Capillary sequencing 21378114 PD4116a 5 179834796 179834796 CTTCAGACAGAGCAAACTCCAGAGC A - AAAAAAACTCTCAGGGATAAATGGG deletion Somatic Capillary sequencing 21350067 PD4116a 18 30684950 30684959 TCTTTTATATGCACAAATACACAAA TAATTCTTTT - TATATTTGTAACTTATTGACAGATA deletion homo_sapiens_core_58_37c C18orf34 ENSG00000166960 CCDS42424.1 ENST00000383096 Somatic Capillary sequencing 21327441 PD4116a 10 66453365 66453396 CTACCTCTCAAAGTTATGTTAATAG CAGACCTTCCCTTTACATAACTCCATGCTATA - CAGACCTCTCTTATATTACCTACAG deletion Somatic Capillary sequencing 21671079 PD4116a 2 200733613 200733613 GAAAAAAATGAAAAACTTACTTGAC A - AAAAAAGAAAAGGTAAGGTAAATTA deletion Somatic Capillary sequencing 21327040 PD4116a 10 64197054 64197066 CAGTTTGGCTGAATTTAACTTTTTT TGTCTTTAAAAAA - TGTAGTTTTCTGAAATTTATCTAAA deletion homo_sapiens_core_58_37c ZNF365 ENSG00000138311 CCDS7264.1 ENST00000410046 Somatic Roche 454 pyro-sequencing 21851837 PD4116a 1 69606672 69606672 AGCTAAGTCTTTAAAGTATTGAAAG A - AAAAACTCTCAACCTAGAATTCTAT deletion Somatic Capillary sequencing 21470024 PD4116a 7 67742952 67742953 ATTTTTATTGCTGAATAACATATAT - TATTTATT ATTTATTTATTTATTTATTTATTTA insertion Somatic Capillary sequencing 21554154 PD4116a 15 48923648 48923649 GGGAATACTGACGCTATGGAAAAGG - G GCTTTCTCCCTGTGAGTGCAGATGT insertion homo_sapiens_core_58_37c FBN1 ENSG00000166147 CCDS32232.1 ENST00000316623 Somatic Roche 454 pyro-sequencing 21514477 PD4116a 12 12082860 12082860 ATAAACAGCCAAGGATCAACAGGCA T - TTAAGGAAAACAGCAAGGTAAGCAG deletion Somatic Capillary sequencing 21333914 PD4116a 10 116273203 116273203 AAACATTTATCACATAAAAGAAAAT A - AAAAAAAAGAAACCCCACTGGCAAG deletion homo_sapiens_core_58_37c ABLIM1 ENSG00000099204 CCDS31288.1 ENST00000369252 Somatic Capillary sequencing 21767887 PD4116a X 63196370 63196371 TCTAGTATATTAACAGGCTAAAAAT - A AAAAAGCACATGATCATATCAACAG insertion Somatic Capillary sequencing 21298612 PD4116a 1 186156573 186156573 TTTCCACTCAACAATTTGACATTAT A - AAACAAAACACTCAGCAAGGATCAC deletion homo_sapiens_core_58_37c HMCN1 ENSG00000143341 CCDS30956.1 ENST00000271588 Somatic Roche 454 pyro-sequencing 21571007 PD4116a 16 71468190 71468190 CAATCAATAGAAGATAGTACACTTA T - TTGAGGCCTGTGTCAGGGACCAGAG deletion Somatic Roche 454 pyro-sequencing 21763353 PD4116a X 99604066 99604066 AGGATTACAGGCATGAGCCACTGCG C - CCAGCATCATGTTATCTGTTTAACC deletion homo_sapiens_core_58_37c PCDH19 ENSG00000165194 CCDS43976.1 ENST00000255531 Somatic Capillary sequencing 21742717 PD4116a 2 38495836 38495847 CCCCCTCTGGCCCAGGGCAAACTGA ATCCCAAGGCTG - ATGGTGGGAGTGGTCATTCTCTGAG deletion Somatic Capillary sequencing 21636940 PD4116a 12 54114665 54114665 CTGTGTGGCTCCAGAGGTCTCAGGA C - CCCCTGGTAAGTTATAGGAGAGGAG deletion homo_sapiens_core_58_37c CALCOCO1 ENSG00000012822 CCDS8864.1 ENST00000262059 Somatic Capillary sequencing 21525806 PD4116a 19 13572950 13572969 TGATGGTTCCCATCCCTTAGCAAGA CCTTGCAGTGTCCAAGTAAT - CCTTGCATCCCTCTGTGGTGCCCTT deletion homo_sapiens_core_58_37c CACNA1A ENSG00000141837 CCDS45998.1 ENST00000360228 Somatic Roche 454 pyro-sequencing 21747501 PD4116a 2 76835713 76835717 ACTATATTGTTTATAACGTTTACAT GACAG - AAGAGCAATTGATAGGATTCAGTAT deletion Somatic Roche 454 pyro-sequencing 21378777 PD4116a 5 50002065 50002066 GATTATTAGTGAGTTTGGGTTTTTT - T AGTTTATTGAAAGTTTGGAATTTTA insertion homo_sapiens_core_58_37c PARP8 ENSG00000151883 CCDS3954.1 ENST00000281631 Somatic Capillary sequencing 21699369 PD4116a 3 143246575 143246590 TCAAGACTTAGCAATAGGTCCACAT CCCTCCCAATGTTTAA - CCCTTCTTCCCTCAGTGCCTCAGCA deletion homo_sapiens_core_58_37c SLC9A9 ENSG00000181804 CCDS33872.1 ENST00000316549 Somatic Roche 454 pyro-sequencing 21599561 PD4116a 3 34269181 34269191 CTTTCCTCTTTTATTTCAAAACTGA CTTAGCCCTTC A ATGAATTCTATTCTTCCTTTGTATC complex Somatic Capillary sequencing 21277605 PD4116a 7 15213796 15213796 TCTTGAATGTCTGATATTAATATAT C - CCCCAAATATATAGATATGCAAATT deletion Somatic Capillary sequencing 21953631 PD4116a 8 108264046 108264046 CTCACCTGGCAGCTTCTCCGGATTT C - TTTGTTGCTTTCATAATCGCTTCTG deletion homo_sapiens_core_58_37c ANGPT1 ENSG00000154188 CCDS6306.1 ENST00000297450 c.? p.? Somatic Roche 454 pyro-sequencing 21456415 PD4116a 7 68447630 68447631 ATCTCACTATATTGTCCAGGCTGGA CT - CAAACTCCCAGGCTCAAGTGATCCT deletion Somatic Roche 454 pyro-sequencing 21641754 PD4116a 12 91371134 91371151 ATTACATGTAGCACTAAGAATTCCT TCTCATTAACTAAAAGGC - TCTGGTTTCATCTGCAGGCCATGCA deletion homo_sapiens_core_58_37c EPYC ENSG00000083782 CCDS31870.1 ENST00000261172 Somatic Capillary sequencing 21569817 PD4116a 16 62365561 62365561 TTTTAACCCAGATAAACTGACAACA G - GGGTTGTCAATTTAAGCTACTGTAT deletion Somatic Roche 454 pyro-sequencing 21375449 PD4116a 5 160177132 160177157 AAGATGTTCTGAACTGTTTTGTTGT GGTTGCTCTTACGTACCCCATATTGG - GGTCTACATGAAATCTCATTCTATA deletion homo_sapiens_core_58_37c ATP10B ENSG00000118322 CCDS43394.1 ENST00000327245 Somatic Roche 454 pyro-sequencing 21394926 PD4116a 5 23875302 23875302 TACATATTGCTCAAAGGAGGAAACT G - GGAAAAATTATACAGAGTTCATATA deletion Somatic Capillary sequencing 21681205 PD4116a 2 133114696 133114697 ACTTAAGTTCAAGATTCTGAAAAAA - A AATACTTTTCTATTATGATATCTGC insertion Somatic Capillary sequencing 21620501 PD4116a 13 100354421 100354421 CTTTGTGGCCCAGGTGTAGTGCAGT G - GCATGATGTTTGCTCACTGCAGCCT deletion homo_sapiens_core_58_37c CLYBL ENSG00000125246 ENST00000376360 Somatic Capillary sequencing 21506147 PD4116a X 27372074 27372096 ATGAATGAAATAATTAGCTTGAAAT AAATTAAGCAACTAATGGCAAAA - AAATCCACTATTTTTGAAGGTCACT deletion Somatic Roche 454 pyro-sequencing 21459866 PD4116a 7 94490737 94490737 CTGTAGACCTTCATAGCTGTGGTTG T - TTTTTAATTCAAATATCATTAAGAC deletion Somatic Capillary sequencing 21525794 PD4116a 19 13464918 13464918 GCCTGGCACACAGTAGGTGCTCAAT A - AATGATTACTGGATAACTGAAAGGA deletion homo_sapiens_core_58_37c CACNA1A ENSG00000141837 CCDS45998.1 ENST00000360228 Somatic Capillary sequencing 21508177 PD4116a X 55569650 55569651 TCTTTATACATGTGCCTGTTAACAT AG - ATTTTTGTTATTTTTTGTTAATTTT deletion Somatic Capillary sequencing 21281692 PD4116a 7 44994933 44994947 GAAAATGTATTGATTGCTTGGTGGC ACATTTTTCTGATAA - ACAGAGCAGAGTAATGGATGGTGTA deletion Somatic Capillary sequencing 21835346 PD4116a 16 13517179 13517179 TGCCTTGTATTTACCCTGGAGATTG T - TTTCTTTATTTTTGTTTTATTACAA deletion Somatic Roche 454 pyro-sequencing 21337062 PD4116a 10 55280106 55280113 GATTAGCTTCCTGTTAAAATTACAA AAAGGCAC T TCCTGGGGGAATCAAAAACCAAAAA complex Somatic Roche 454 pyro-sequencing 21798999 PD4116a 4 67663131 67663163 AGCTTCACTGAAATGAACCTCAGAA GTAAAAACAAAACCCTCTTTTCTTTTCTCTGGT - GTAAGCAACTCCTTGGAAATGGATT deletion Somatic Capillary sequencing 21282445 PD4116a 7 50779600 50779604 TGTCTCTAATGGGTACTGTTGCTAC CTCAT - CTTTACAGATGAGGAAAAAGGAGGA deletion homo_sapiens_core_58_37c GRB10 ENSG00000106070 CCDS43583.1 ENST00000335866 Somatic Roche 454 pyro-sequencing 21699440 PD4116a 3 143883450 143883453 TTCAAAACCATCAACTCTCATGAGA ACTC - ACTCACTATCATGAGAACAGCAAGA deletion Somatic Roche 454 pyro-sequencing 21729914 PD4116a 11 40423867 40423867 TTCCAGATATTTTAATCAGTTCGTG T - TTTTGTAGTGCATTTGGTATTTGTT deletion Somatic Roche 454 pyro-sequencing 21280293 PD4116a 7 33854667 33854682 AGACTCCATATCCTTTATCTCGATC AGAAAACATTTTGGAT - AGAAAGGTGGGGTGGGAGTGAGCTC deletion Somatic Capillary sequencing 21857614 PD4116a 1 116675871 116675887 AAGTGCGTGAGCCAGCACTTCCTGA AACACTATTTCGTCCGG - AACAGCAACCTCTTTCAGTGCACCA deletion homo_sapiens_core_58_37c C1orf161 ENSG00000173212 CCDS886.1 ENST00000369500 c.974_990del17 p.H326fs*11 Somatic Roche 454 pyro-sequencing 21925045 PD4116a 19 48453669 48453669 CCACATGGGTTGAAAAAAAAATTTT T - TTATCGTTCCCAATATAACAACAAA deletion Somatic Capillary sequencing 21481984 PD4116a 9 72574155 72574155 ATTATTTACTCTTATTTTACAGATG A - AAACAAAGATTCAGAGAAGATAACT deletion Somatic Roche 454 pyro-sequencing 21285070 PD4116a 7 6154632 6154633 CACTGTGCCCGGCCCTATATATATA - A TTTTTAAGCAGTTGTTCAGAGCAGC insertion homo_sapiens_core_58_37c USP42 ENSG00000106346 CCDS47535.1 ENST00000306177 Somatic Capillary sequencing 21957029 PD4116a 8 132118113 132118123 GAAAGAAGAAAAGAACTCAATGTGC CAAGTAATTTA - CATACTGACAGCAAGTTTATTTGAA deletion Somatic Roche 454 pyro-sequencing 21855580 PD4116a 1 100786677 100786677 GGCTGATGGGAGGTGTTTAAGTCAT G - GGGGTGGATCCCTTATGAATGACTT deletion Somatic Capillary sequencing 21292857 PD4116a 1 145077022 145077026 ATAGATAGATAGATAGATAGATAGA TAGAT - TTTTTTTTTTGAGACGGATTCTCAC deletion Somatic Capillary sequencing 21761845 PD4116a X 82044217 82044218 TTAGAAGAAAATCTAATAAACAAAA AG - GAATAGCATCAATATCAACAAAAAG deletion Somatic Roche 454 pyro-sequencing 21298994 PD4116a 1 188591328 188591328 TACCATACTAATTTACAAAGATTGC T - TTTCAATAGTCAGGGCATGTACAAA deletion Somatic Capillary sequencing 21526910 PD4116a 19 19852040 19852063 GGCAGTGAGTCCTCTGTTCCCACCC TCACCACCCAGGGATGGGTTTTTT - TTTTTTTTAGAAAGGCCTCACTGAG deletion homo_sapiens_core_58_37c AC011477.4 ENSG00000249155 ENST00000507121 Somatic Capillary sequencing 21643976 PD4116a 12 108308441 108308441 GGAGCTGAGACACTCAAAGGATTAA C - CCCCTGGCCCAGGTCACCGACTTGT deletion Somatic Roche 454 pyro-sequencing 21504821 PD4116a X 12894787 12894807 TACACAAATCATGGTCTGATGGCTG TCCAATATAAATTCTCTATTT - TCCATTTTAACTAAAGAGACGATAT deletion homo_sapiens_core_58_37c TLR7 ENSG00000196664 CCDS14151.1 ENST00000380659 Somatic Capillary sequencing 21407016 PD4116a 11 77378361 77378363 CATCTCCATGAGCATTGTCACAACT CTC - CTCCTCATCCGTCTCAATCCGGTGT deletion homo_sapiens_core_58_37c RSF1 ENSG00000048649 CCDS8253.1 ENST00000308488 c.3925_3927delGAG p.E1309delE Somatic Roche 454 pyro-sequencing 21349315 PD4116a 18 24956715 24956715 ATCCTCAGAATTTTGCGAAAAGATA T - TTTTGCATCTCAAAGGGCTATCTTT deletion Somatic Capillary sequencing 21788974 PD4116a 10 27898450 27898463 TGGATTTTTAGATGAAATTAAACTC TTAAACTGATGGGT - TTAAGAGTTTTTTCTTCTCCTTCCT deletion Somatic Roche 454 pyro-sequencing 21675532 PD4116a 2 232940585 232940616 CCATGTTCCAGGCACCTGTGCTAAG AGTTTTTCATTTATTATCTTAGTTCCCACAAT - AGTTTTGTGATATTAGACACTCTTG deletion homo_sapiens_core_58_37c DIS3L2 ENSG00000144535 CCDS42834.1 ENST00000325385 Somatic Roche 454 pyro-sequencing 21510056 PD4116a X 21593720 21593721 AGAAGACTCTGAAAGGTGCAAAAAA - A AAGGCAGACAGGCTAGAGACCTCCA insertion homo_sapiens_core_58_37c CNKSR2 ENSG00000149970 CCDS14198.1 ENST00000379510 Somatic Capillary sequencing 21939602 PD4116a 17 68883076 68883088 ACAGCTGTGGCAAACCCATACTTTA CCAGTTTCATGTG GCT AGATCTTACTAGCTTGGGCCCTTCT complex Somatic Roche 454 pyro-sequencing 21548919 PD4116a 15 90663877 90663898 AAAAGAAAAGAAAACAACATTACCT GCAACCCAGAAACCATCCTTAA - GTTCTCTCTTAGACATTATTTTTCC deletion Somatic Roche 454 pyro-sequencing 21412644 PD4116a 11 122463538 122463538 GGGCTGGGAGCCTAGTAAAACGCTT G - GGGAGGTCAGATCCCCACTGTTTGA deletion Somatic Roche 454 pyro-sequencing 21396680 PD4116a 5 35138633 35138633 AGGACATGCTTCAAAATGATGCACA T - TTTGGTTTCATTAGTCATGTGAAAG deletion homo_sapiens_core_58_37c PRLR ENSG00000113494 CCDS3909.1 ENST00000382002 Somatic Capillary sequencing 21805566 PD4116a 4 120074402 120074402 GCCACGTTGTACAATGATACTTTTA C - TTTGTCAAGACTGTAGATTGCAACT deletion homo_sapiens_core_58_37c MYOZ2 ENSG00000172399 CCDS3711.1 ENST00000307128 Somatic Roche 454 pyro-sequencing 21663560 PD4116a 2 136994886 136994886 TTGTCTGAACCATTTTGAGCTGGTG T - TTTTGTCACTTACAGCCTAAATAAT deletion Somatic Roche 454 pyro-sequencing 21348561 PD4116a 18 19305260 19305275 TGGAGACTTCAAGATGAAAAAATGT AAAATGTGGAAGGCAG - AAAGGTCATGTTGGAAAGGAGGAAT deletion Somatic Capillary sequencing 21299703 PD4116a 1 193813658 193813662 AGAAATAAATGCATGCATATGTAGA AACTT - AACTTAACCAGGACTTAATGACCAA deletion Somatic Capillary sequencing 21795188 PD4116a 10 27271405 27271406 AGCATTTTAAAAAGAAATGAGTCTC - A GTCTCAGGATTTTTCTTTTATGAGC insertion Somatic Roche 454 pyro-sequencing 21368334 PD4116a 5 91366431 91366431 TCAGGCTCTTTTCCAAAATAGTAGG T - TTTAAATCTAGATAATATCATGTAG deletion Somatic Capillary sequencing 21396362 PD4116a 5 33104342 33104345 AACCTTATCTTGGATCCCAATGAGC TTTT - TTTAAATCCATGCTTTGAATTCCTT deletion Somatic Capillary sequencing 21784136 PD4116a 10 293375 293391 CAAGAACCAAGAGCAAAGAAAGGAC GACGTAATCAAAGTGTG - GAGCCCAAAAAGGAAGTAAGTTGCC deletion homo_sapiens_core_58_37c ZMYND11 ENSG00000015171 CCDS7052.1 ENST00000309776 c.1076_1092del17 p.R360fs*9 Somatic Roche 454 pyro-sequencing 21570793 PD4116a 16 70587380 70587380 TGTGGTGCCTTGTCTTGTTCTGTCC T - TTTTTTTTAACCTGATTTCTGGTTA deletion homo_sapiens_core_58_37c SF3B3 ENSG00000189091 CCDS10894.1 ENST00000302516 Somatic Capillary sequencing 21305129 PD4116a 1 229529005 229529024 CCACGGGAGGATAGCTTGAAGCCAG GAGTTCGAGACCACCAGCCT - GAGTAACATAGCTGGACCTCATCTC deletion Somatic Capillary sequencing 21662202 PD4116a 2 125505092 125505092 GGAGCTCCCCCGATGGTGACTTTTG T - TTTTTAACCTTAAAAATGGTAAATT deletion homo_sapiens_core_58_37c CNTNAP5 ENSG00000155052 CCDS46401.1 ENST00000431078 Somatic Capillary sequencing 21281940 PD4116a 7 47002691 47002692 AGTACACAAGGACACAATGATGAGA AC - AAAAAACACTGGAGATTCCAAAAGT deletion Somatic Roche 454 pyro-sequencing 21397675 PD4116a 5 42835850 42835854 AGGGTGGGGGGAGGAAGAGGATCAG AAAAA - AAATAACTATTGGGTACTAGGCTTA deletion homo_sapiens_core_58_37c SEPP1 ENSG00000250722 ENST00000514218 Somatic Capillary sequencing 21921347 PD4116a 6 56029832 56029833 ATATAGGAGAATACAGAAAGGATAT - T TTTTTTAAGGTGAGTAGAAGAAGAA insertion homo_sapiens_core_58_37c COL21A1 ENSG00000124749 ENST00000244728 Somatic Capillary sequencing 21325080 PD4116a 10 53287287 53287287 AAGGATAAAAGTCTATTTCAAGGGG A - AAAAAAAGTATATGAGTAAGACTTG deletion homo_sapiens_core_58_37c PRKG1 ENSG00000185532 CCDS7244.1 ENST00000373980 Somatic Capillary sequencing 21466379 PD4116a 7 145963887 145963887 ACATGTGACAAGAAAGATGTGATGG A - AAAAAAAATGTTTGTTTACTCACAC deletion homo_sapiens_core_58_37c CNTNAP2 ENSG00000174469 CCDS5889.1 ENST00000361727 Somatic Capillary sequencing 21937705 PD4116a 17 71038948 71038950 AAGAGTGAAACTCCGTCTCAAAATG AAT - AATAATAATAAGAAGAAGAATTACC deletion homo_sapiens_core_58_37c SLC39A11 ENSG00000133195 CCDS11690.1 ENST00000255559 Somatic Capillary sequencing 21659341 PD4116a 2 100620203 100620203 ATGTTGTAAGGGAAAGAATGAAGAG T - TTATGAAGTGTAAAACCAGGCAAAG deletion homo_sapiens_core_58_37c AFF3 ENSG00000144218 CCDS42723.1 ENST00000317233 Somatic Roche 454 pyro-sequencing 21805862 PD4116a 4 122071430 122071430 TAAGATTTACCACATGGAATGAATT C - TTTTATAATTGTTACAATCATCTCA deletion homo_sapiens_core_58_37c TNIP3 ENSG00000050730 CCDS3718.1 ENST00000454328 Somatic Roche 454 pyro-sequencing 21392376 PD4116a 5 6964341 6964375 TTACAACTTCTGGTACAGTAAAAGG TAGTAGCTTGTATAAAGTCTAGAAAGAGAACAAAA - TAGTGAGAATATTATCGTATGCCTA deletion Somatic Roche 454 pyro-sequencing 21433414 PD4116a 14 21065330 21065330 AAGAGCAATGCAAAGGCCATGGGAC T - TTACCAACCCCTCCAGGAACCCCTT deletion homo_sapiens_core_58_37c ENSG00000226910 ENSG00000226910 ENST00000415015 Somatic Capillary sequencing 21642033 PD4116a 12 93208743 93208743 CAGCTAATACCCTTTGGCTAAGCAC T - TTTGGTTGACATTCTTTTATTAATA deletion homo_sapiens_core_58_37c EEA1 ENSG00000102189 CCDS31874.1 ENST00000322349 Somatic Capillary sequencing 21729374 PD4116a 11 36984483 36984489 TAAGATATAATGGAGGTTCTTCAAA AAATTAG - AAATGGAGCTACCATATGATCCAGC deletion Somatic Roche 454 pyro-sequencing 21747972 PD4116a 2 80671192 80671202 TCAAACTCTGATCTGAGTCAAAATC CTGTGCACTTT - CTACTCTCCCATAGCCTCTCTGAAT deletion homo_sapiens_core_58_37c CTNNA2 ENSG00000066032 CCDS42703.2 ENST00000466387 Somatic Roche 454 pyro-sequencing 21316817 PD4116a 1 200660333 200660334 ACTGTAAACCTGGATAGCCTGTTTT - G TGGAAGGTCACAGTTTTAAATAACT insertion Somatic Roche 454 pyro-sequencing 21396039 PD4116a 5 31255160 31255171 TCTGTAGTTTTAAATAATTAAAGGG CCACATTACCGA - CCTATTAAAAATGCAACATCCAAAT deletion homo_sapiens_core_58_37c CDH6 ENSG00000113361 CCDS3894.1 ENST00000265071 Somatic Capillary sequencing 21629795 PD4116a 13 75547354 75547355 TAGGTACATATATGCATATATTTAA - A AAAAAAAGTCTTTTAGGAATGCATC insertion Somatic Capillary sequencing 21298456 PD4116a 1 184411016 184411031 GCAAGTGTTTCCTGTTCAGCTGGTA TTGATGTTCGTAGGGC - TTGATTGATATTCACTGGTAAAATT deletion homo_sapiens_core_58_37c C1orf21 ENSG00000116667 CCDS1362.1 ENST00000235307 Somatic Capillary sequencing 21932228 PD4116a 17 32496668 32496696 GCCAGAATGGACCAGAAACTACTAG CAATTATGTTGAAGCCATTAGTGCAAAGC - CAATTTGCTTCTAGAGTTACAGTTG deletion Somatic Roche 454 pyro-sequencing 21702375 PD4116a 3 163916792 163916824 ATAATTAATTATCTCCAATAAACCA TATTATATAGGGGATTCTCCTTCATGTAAAAAC - TATCTTTCCCCCAATTGTGCCAAAT deletion Somatic Capillary sequencing 21636115 PD4116a 12 48394172 48394172 AAAATCTTGACCCAGCAATGAAGGT G - GGGGGTTACTATACTATATTCTCTT deletion homo_sapiens_core_58_37c COL2A1 ENSG00000139219 CCDS41778.1 ENST00000380518 Somatic Capillary sequencing 21333605 PD4116a 10 113734494 113734494 TAAACATAAATAGATTGTAACTTGT C - TTTTGTTGGTCTTCCACATTATATA deletion Somatic Roche 454 pyro-sequencing 21808654 PD4116a 4 141643390 141643421 TGAGAAATTCCACTAATCACTTTTA AATTTCACTCATTCATTTTCCATTAATGAAAG - AGGGGGAAAAAAGCTCAGAAATAAA deletion homo_sapiens_core_58_37c TBC1D9 ENSG00000109436 CCDS47136.1 ENST00000442267 Somatic Roche 454 pyro-sequencing 21970785 PD4116a 6 68408649 68408684 TCCCAGCCACTCACCCCAGGTTTAT GATTAATTGCGTATTAATTCCCACGTGTAGACCACA - GGAATAATACTGAAAGTTAAGTCAT deletion Somatic Capillary sequencing 21305083 PD4116a 1 229178998 229178998 AGTAGAGTCCATATATGAAAGTGCA C - CACCAGTATCATAATCTATGGTGAA deletion Somatic Capillary sequencing 21742872 PD4116a 2 39646199 39646203 TTAGGAGTCTTTGTGACTTTTTGTA AATCC - AAAAATATTCTAAAATAAAGTTTAT deletion homo_sapiens_core_58_37c MAP4K3 ENSG00000011566 CCDS1803.1 ENST00000263881 Somatic Capillary sequencing 21719228 PD4116a 3 193076884 193076885 TTTAAAGAAAGGATATATATATATA - AT TTACATTTTTAAGTAACTTGTTAAC insertion homo_sapiens_core_58_37c ATP13A5 ENSG00000187527 CCDS33914.1 ENST00000342358 Somatic Capillary sequencing 21458049 PD4116a 7 79189481 79189481 TGTCACCCTCAATCAATTCAGTGTG C - TTTTTAGTCACCTCTGATATTCACT deletion Somatic Roche 454 pyro-sequencing 21280292 PD4116a 7 33854040 33854040 TATCCTGTACCCCAAATACCCAATG C - CCAGTTCTCTCTGTGTCACTGGACT deletion Somatic Roche 454 pyro-sequencing 21513054 PD4116a 12 3519484 3519484 GTCCCCTGGCAGTGACCCACTGCCT G - GGCAAAGCTTTCTCAGCTTTTTACC deletion Somatic Capillary sequencing 21748097 PD4116a 2 81900405 81900405 AATTAGTAATCACAGAACTAAGTGC T - TTTTTTTTAATTTGCTTCATAACAG deletion Somatic Capillary sequencing 21300585 PD4116a 1 200020130 200020169 TCAAAACAATGCAATTATAGTCTCT TAGTTTAACATTGGCAAAAACTATTACATGTGTTATAGAG - TAGTATGATTTTGTTATAATTAACA deletion homo_sapiens_core_58_37c NR5A2 ENSG00000116833 CCDS1401.1 ENST00000367362 Somatic Capillary sequencing 21462831 PD4116a 7 118753052 118753086 TTCTTTGGGTTAAATCTGCTTAGTG TTCTCTAAACTTCTTATACTTGGATATTGATATCT - TTCTCTAGGTTTGGGAAGTTCTGTG deletion Somatic Capillary sequencing 21729402 PD4116a 11 37165960 37165969 TTATTCAGAGCCCAAGGAAATAGGC CTTTGGAAGT - CAACAATCTTTAAAGTATTCTCCTG deletion Somatic Capillary sequencing 21542502 PD4116a 15 42774088 42774088 TAACTATAAGGCACCCACCAAATTT G - GGAAATTTTCAGCCATTAAATTTTT deletion Somatic Roche 454 pyro-sequencing 21345912 PD4116a 10 114490703 114490704 TTTCCTTGATAGTCTGAATAGTTTA - TAT CCTGATGCCAAGAAATTATATATAA insertion homo_sapiens_core_58_37c VTI1A ENSG00000151532 CCDS7575.2 ENST00000393077 Somatic Capillary sequencing 21776362 PD4116a 22 30740037 30740064 GCCACAGGCAAAGCTGTCAGTGCAC TTTGCAATAAATTAATAATCTGATTATT - TTAAATGCCAGAACTGACTTGTCCT deletion homo_sapiens_core_58_37c SF3A1 ENSG00000099995 CCDS46684.1 ENST00000439242 Somatic Roche 454 pyro-sequencing 21619326 PD4116a 13 92583364 92583375 CATGCCCCATCTTCCTTACTCCTTC ATATGATTTTCT - ATCTTATTGTTTTCCATCATTCTTT deletion homo_sapiens_core_58_37c GPC5 ENSG00000179399 CCDS9468.1 ENST00000377067 Somatic Capillary sequencing 21517866 PD4116a 12 33403700 33403701 CAGAGACTGTGCTCTTGACCATTTT TT - TGTATTACATTTGGGCACATACAAT deletion Somatic Roche 454 pyro-sequencing 21282629 PD4116a 7 51930590 51930603 GGAATGTCGCACACAGCAGGGAAAG CCCACCGGAGTCTA - CTCATGCTATCATACGTGCATGCCC deletion Somatic Roche 454 pyro-sequencing 21759501 PD4116a 2 86606218 86606219 AAGTCCTACTTGACCATGGTGTTTT - T TTTTTTGATGTGCTGTTGCATTCAG insertion Somatic Capillary sequencing 21937707 PD4116a 17 71039635 71039654 CAGGGGTATGGACACTGTGTTTTAA AGCCTCACACGTGATGCTGC - AGCAGCTTAGCCAGCATGGAGCAGG deletion homo_sapiens_core_58_37c SLC39A11 ENSG00000133195 CCDS11690.1 ENST00000255559 Somatic Capillary sequencing 21395730 PD4116a 5 29458598 29458599 TTAATATATATTTTACAATATCCAC AA - AAATAACCCAACAGTCATTTTATTT deletion Somatic Capillary sequencing 21742158 PD4116a 2 34846724 34846728 TTTATGTTTCCCCAAATTCATATGT TCGAA - TCCTAACCTCCAATGTGATAGTTTA deletion Somatic Roche 454 pyro-sequencing 21699562 PD4116a 3 144746386 144746386 CCAGCCACTCCAGTCATCGCTGAAA G - GGGCCAATGTCAAGCTCTGGCCATG deletion Somatic Roche 454 pyro-sequencing 21326940 PD4116a 10 63596098 63596119 TATGTTCTTTTTCTGCAGGGACTTG ACTGTAATTAGTGTGTGCCAAA - ACTCTCTCACAGAGATTTCATTGTC deletion Somatic Roche 454 pyro-sequencing 21353436 PD4116a 18 57945857 57945857 TTGTTAGTGGACCTGAGTGGCTTGC A - AAATGGGGAAAGGGTCAAAAATTAA deletion Somatic Roche 454 pyro-sequencing 21760242 PD4116a X 62523342 62523342 CTTAGCACACTTTTTGATGAAATAA T - TTTTTTTCTTGCTGATTTGTTTGAA deletion Somatic Capillary sequencing 21955518 PD4116a 8 121741826 121741840 TACTTGTTGAATTCTCTACTCCATG CATGCATTGATTATT - CAAAATTAACTTTAAAAATAATATT deletion homo_sapiens_core_58_37c SNTB1 ENSG00000172164 CCDS6334.1 ENST00000395601 Somatic Capillary sequencing 21922557 PD4116a 19 32157047 32157050 TTGATTGTCCAAAGCTATTCCACAG TGAA - TGTCTTTGTAAAGTGTGATCCAATG deletion Somatic Roche 454 pyro-sequencing 21748106 PD4116a 2 81970536 81970562 AAAAGACACTCAGATTGAAAAGAAG TGAAATTATCTCTATTTGCAAAAGGCA - TGAAATACACATGGAAAATTGTATG deletion Somatic Capillary sequencing 21938221 PD4116a 17 74064737 74064742 CTACAAATGTCACCTCTATGCCAAG CCTCCT - CCTCTATGCTCATGTAGCTCTTTAT deletion homo_sapiens_core_58_37c SRP68 ENSG00000167881 CCDS11738.1 ENST00000307877 Somatic Roche 454 pyro-sequencing 21365118 PD4116a 5 62703759 62703774 TAGGAGAAATTTTGGTGACCATGGG CTTGGAAAGACATTTC - CTTAATAGGACATCAAAACTATAAT deletion Somatic Capillary sequencing 21670152 PD4116a 2 193877668 193877668 AACAACAACCATTACTCAGAGTAAT A - AAAAAAATCATTGAAAGCATTACAA deletion Somatic Capillary sequencing 21849133 PD4116a 1 44328859 44328863 TTGTAGCTCAGGGTTTCAGAGACAT TCAAG - TCAAGTTGAGAGTGAGAGATTTGGT deletion homo_sapiens_core_58_37c ST3GAL3 ENSG00000126091 CCDS493.1 ENST00000262915 Somatic Roche 454 pyro-sequencing 21396679 PD4116a 5 35138423 35138432 TACTTAACACTGCTGAACTGTACAC TTAAGAATAG - TTAAGACAGTAAATACTATGTTATG deletion homo_sapiens_core_58_37c PRLR ENSG00000113494 CCDS3909.1 ENST00000382002 Somatic Roche 454 pyro-sequencing 21354862 PD4116a 18 68288897 68288906 TGAGTGATTGTTTCCTGGGATCACT ACCGGTACTG - ACTGCTATATAAGTCAGGGTCTTTT deletion Somatic Capillary sequencing 21504653 PD4116a X 10844748 10844771 CTGTCCAGCTCTCAGCTCAAGCAAT CCTTTCTCAGGGAAATTTTCTCTG - CCTTTCTCTGTAGCAGATCAGCTAC deletion homo_sapiens_core_58_37c MID1 ENSG00000101871 CCDS14138.1 ENST00000380785 Somatic Roche 454 pyro-sequencing 21569877 PD4116a 16 62750495 62750495 TGTCTTTTCATATTCCATTTACTTT A - AAAAAAATAGCTTTCTTCACTATCT deletion Somatic Capillary sequencing 21280009 PD4116a 7 32237540 32237540 ATATATGAAAAATCATTGAATTATG C - CCTTTAAATGGGTAAGCTTTATAAT deletion homo_sapiens_core_58_37c PDE1C ENSG00000154678 ENST00000396193 Somatic Roche 454 pyro-sequencing 21360363 PD4116a 18 53140406 53140407 AGGTTAGCCAACATGAAACATGGAA - A GTTTCCTCTTTTCTTCTTTTCTTTC insertion homo_sapiens_core_58_37c TCF4 ENSG00000196628 CCDS42438.1 ENST00000354452 Somatic Capillary sequencing 21707191 PD4116a 3 119696473 119696482 ATGACTTAAAGAACAGTGCTACACA TAGCACAAAG CT ATTACTATTTCTTTCAAGTTTCTAT complex Somatic Capillary sequencing 21976259 PD4116a 6 115793316 115793316 TTGCCCAGGCTGGAGTGCGGTGGTG C - CATCATGGTTCACTGCAGCCTCGAA deletion Somatic Roche 454 pyro-sequencing 21786463 PD4116a 10 12505130 12505137 AGAGAATGAAAATAAGCTCTAAGAG TTTTTTTT - TTTTTTTTTCCTCCTGAAATGGAAT deletion homo_sapiens_core_58_37c CAMK1D ENSG00000183049 CCDS7091.1 ENST00000378847 Somatic Capillary sequencing 21815703 PD4116a 4 190665241 190665241 AAGGGATGGGGTCCTATATTTAGCC T - CCTTAAACAAAACAATAACAGTCAA deletion Somatic Capillary sequencing 21551057 PD4116a 15 82073612 82073625 CCATTTGCTCATGTGACCCTTTGTC TGACAGCTTTAAGA ACATG AGCACCAAAAGTCAATTATCTGAAA complex Somatic Roche 454 pyro-sequencing 21969059 PD4116a 8 138717783 138717784 TTGCAGGATTCATAAAACTTGGTTG - TTTTG TTTGTGGCTTGTAGTGTAAAAATTC insertion Somatic Roche 454 pyro-sequencing 21396678 PD4116a 5 35135096 35135096 CTATAACATTGGACTGAGGAACATG T - TTTTTTTCCCCTTTTAAATCTACTG deletion homo_sapiens_core_58_37c PRLR ENSG00000113494 CCDS3909.1 ENST00000382002 Somatic Capillary sequencing 21802903 PD4116a 4 97315971 97315975 TTGACAGTTGTCATACAGATTTTCA TTATC - TTAAATTCTCCCTAGTTCTGTATGT deletion Somatic Capillary sequencing 21955517 PD4116a 8 121741533 121741533 GCCACTGCACCTGGCCTGACGTTTT A - ATAATAGTCATTCTGACAGATGTGA deletion homo_sapiens_core_58_37c SNTB1 ENSG00000172164 CCDS6334.1 ENST00000395601 Somatic Roche 454 pyro-sequencing 21805709 PD4116a 4 121002760 121002790 AAGGGGTGAAAAAAATGAATAGAAG GAAGTCTTCATTCTGGAAAGGGACTCATTTT - GAAGTTCAACTAAAACAGGCTGTTT deletion Somatic Roche 454 pyro-sequencing 21931567 PD4116a 17 26317660 26317663 ATAGCAATGCAAAAAACGGCCTAAC ACAA - ACAGTTAGTGAAAGAGGGGAGCTAC deletion Somatic Capillary sequencing 21977462 PD4116a 6 126855745 126855762 CACAGGGCTGTCAGATGACTGTACT GTTTGCCTCACACCAAGG - GTGTGTCTATGATGTATTTTCACAA deletion Somatic Roche 454 pyro-sequencing 21727873 PD4116a 11 25172566 25172566 GAGGTGCTGTTGACCCATAGTGCCT G - GGCCTAATTGCAATGGAGAAATCTT deletion Somatic Roche 454 pyro-sequencing 21297984 PD4116a 1 180543841 180543841 AAGAAATAGAAACTGGGTACTGCCT A - AATGAATTCACTTGTGTGGAAAACA deletion Somatic Roche 454 pyro-sequencing 21897181 PD4116a 9 24453432 24453437 ACAAGTCTTTGTCAACATTTGGCTT TCTTTG - TCTTTGTAATTTAATCGTTCTTATG deletion Somatic Capillary sequencing 21435818 PD4116a 14 37447524 37447538 TCACACAAATTTGTTGGTTTCCCAG TGCACATAAAAGTTA - TGTTTACACTATACTATAGTCTATT deletion homo_sapiens_core_58_37c SLC25A21 ENSG00000183032 CCDS9663.1 ENST00000331299 Somatic Capillary sequencing 21977149 PD4116a 6 123731107 123731107 TAATTGTAAGAGAGAGTGGGTTGAC T - TTAAACAATTGGATGGACTTTTATA deletion homo_sapiens_core_58_37c TRDN ENSG00000186439 ENST00000334268 Somatic Capillary sequencing 21499889 PD4116a 18 5861703 5861725 AGTATTGGTGAGGATATGGAGCAAA AGGAACTTTCATCAGTTTATAAT - AGGAGTGTACATTTGTATAATCACT deletion Somatic Capillary sequencing 21508887 PD4116a X 5390783 5390784 TACCACTGACATTCCTCAAGAAGTA - A AAAAAACTATTTTAAAATCTTTATG insertion Somatic Capillary sequencing 21329275 PD4116a 10 77965480 77965488 TGAGGAGAAATTGTCAGTATGCTCT AGATGGCAG - AGAGTGGTGTTTCATTTAGCTATTC deletion homo_sapiens_core_58_37c C10orf11 ENSG00000148655 CCDS7351.1 ENST00000372499 Somatic Capillary sequencing 21506058 PD4116a X 26575212 26575212 AAAGGCATGTGCCACCATGCATGGC T - TTTTTTTTGTATTTTTTGTGCAGAC deletion Somatic Capillary sequencing 21670453 PD4116a 2 196244287 196244287 CCAGGTGGGAGGTGATCGGATCATA G - GGGTGGTTTCCCCATGCTGTTCTTG deletion Somatic Capillary sequencing 21778276 PD4116a 22 44411105 44411105 TGATACAGGAGATAGAAAGAAATTA T - TTAGACAGATAGTGAGGGTGAAAGA deletion homo_sapiens_core_58_37c PARVB ENSG00000188677 CCDS46724.1 ENST00000406477 Somatic Roche 454 pyro-sequencing 21949551 PD4116a 8 74047372 74047385 GAATCCAAACAATATTCTTTACTGG GGAGCAGATGTTCA - GAAGGAACCAGGAATAGTGAGTTCA deletion Somatic Roche 454 pyro-sequencing 21627674 PD4116a 13 57679137 57679138 GTCTCAGCCCACATTTCAAATTAAA - T TTTTTACTTCTGGTAGAGTTTATTG insertion Somatic Capillary sequencing 21582467 PD4116a 20 53718874 53718888 GACTCCTTAAATAGGAATTTGGGCA AGATAAAAAAAAATT - AGAGTTTAGTCCTCAGCTGGAACAT deletion Somatic Capillary sequencing 21278587 PD4116a 7 22260164 22260187 GGCATTAGTAAAATACCACTAATAG TGCATAAAAGATGGTGAAATATTT - TGCTAAAAATAAGACACTGGAAAAA deletion homo_sapiens_core_58_37c RAPGEF5 ENSG00000136237 ENST00000344041 Somatic Capillary sequencing 21937333 PD4116a 17 68752224 68752224 TGTTATAATAGAGATTTTAACACAC A - AAAATTAAAGGTTATTTGGAGGATA deletion Somatic Capillary sequencing 21617528 PD4116a 13 79487387 79487387 TCACTTGAGCCTGGAAGGTCAATGC T - GCAGTGAGCCATGATCATGCCACTG deletion Somatic Roche 454 pyro-sequencing 21349245 PD4116a 18 24234263 24234263 ATGCATTATTCAACGCAAATCGAAT A - ATACGCTTTCATCATCATCTAGTTG deletion Somatic Roche 454 pyro-sequencing 21695907 PD4116a 3 116736774 116736774 CTTTACAATAAATGGAAACTCACTG C - CATGGTTAAGTCCTTTCACAATCAG deletion homo_sapiens_core_58_37c LSAMP ENSG00000185565 ENST00000474851 Somatic Roche 454 pyro-sequencing 21536033 PD4116a 20 24039745 24039753 AAGAATATTTTTCTGTTAATGCAGA GTCAAGGAG AAAAT GCATGTGTGCCTGTCAATCAAAGGT complex Somatic Roche 454 pyro-sequencing 21309059 PD4116a 1 201271898 201271915 GAGCCCCTCCCCTCCCGCCCCCACA GCGTGCCCAAGGGCGAGG T CCTGGAAGGGGATGAAGACAGGCTG complex Somatic Capillary sequencing 21778277 PD4116a 22 44411569 44411573 CAGAAATTAGCTGTGGGTGATGATG CACAC - CTGTAGTCCCAGCTACTTGGGAGGT deletion homo_sapiens_core_58_37c PARVB ENSG00000188677 CCDS46724.1 ENST00000406477 Somatic Roche 454 pyro-sequencing 21405040 PD4116a 11 62348749 62348766 GCAGGGGGAAGAACAAAACAGAGCA CAAAGATGGAAGAGCAAC - CAAACACCTCTAGCGGAGGAAGGAC deletion homo_sapiens_core_58_37c TUT1 ENSG00000149016 CCDS8021.1 ENST00000278279 Somatic Roche 454 pyro-sequencing 21320424 PD4116a 1 229531394 229531395 TTCCCTGAGTCTTCGTTTTCTTCTG - G CCAGGAAGTCACTTGCTTGGCTCCA insertion Somatic Roche 454 pyro-sequencing 21917528 PD4116a 6 25481392 25481393 AAGGCTGCCCTCTTTTTGTAATTTA - A AAATGGATTAGCATACTCAAGTCTC insertion homo_sapiens_core_58_37c LRRC16A ENSG00000079691 ENST00000329474 Somatic Capillary sequencing 21307470 PD4116a 1 242963213 242963213 TATTTTTCTACCTAACTTGTTTCAC A - AAAACATGTTATTTACTGTATGGCA deletion Somatic Capillary sequencing 21284800 PD4116a 7 4657435 4657436 ATTCCATTAATTCCCACATATCAAG - T CGGGACCACGTGGAGGTAATTGGAT insertion Somatic Capillary sequencing 21297983 PD4116a 1 180543754 180543764 TACCACTCAGGTATTCCTTATTCAG CAGTTTTCGTA - CAAAAATGCTACCTTTTAATTTCCT deletion Somatic Roche 454 pyro-sequencing 21933840 PD4116a 17 45512906 45512906 TAAGATTTTTTTGTTTTTGTTTTTG T - TTTTTTTGCAGCTATTGTAAAAGGG deletion homo_sapiens_core_58_37c C17orf57 ENSG00000178852 CCDS11512.1 ENST00000331493 Somatic Capillary sequencing 21361582 PD4116a 18 64722051 64722052 TTCTGTACATTATATATATATATAT - TA CTAAGCACATAAGCACATCCATGTT insertion Somatic Capillary sequencing 21303542 PD4116a 1 219611289 219611289 ACGCCTGGCTAATTTTTGTATTTTT A - GTAGAGATGGGGTTTCACCATGTTG deletion Somatic Capillary sequencing 21790390 PD4116a 10 36144495 36144498 TATTAATGTGTGAAAGTGTTGATGA GTGT - GTGTATGTGTGTTTGTTTTAGTAGA deletion Somatic Roche 454 pyro-sequencing 21614422 PD4116a 13 55540550 55540550 CAAAACCCCAGCTGTACAGAAAAAT A - AAAAGAAAAATTAGCCGTGTATGGC deletion Somatic Capillary sequencing 21301155 PD4116a 1 203128925 203128925 ATGAATACCCCTTTAATAAATGAAA G - GGTGAGTCTCAACTGCCTGATTGCC deletion homo_sapiens_core_58_37c ADORA1 ENSG00000163485 CCDS1434.1 ENST00000367236 Somatic Roche 454 pyro-sequencing 21281412 PD4116a 7 42351015 42351018 ATCCAATTCTTTCAGTCTGATTCTA TTTC - TTTCTTTCTTTCCTTCTTTTTTGCC deletion Somatic Roche 454 pyro-sequencing 21957931 PD4116a 8 138705748 138705750 GAATAGACTCAGGAAAATATAAGAA AAT - AATCGTTCCTTGAAAAGTAGAAACT deletion Somatic Roche 454 pyro-sequencing 21562669 PD4116a 17 14605444 14605444 TGTGGCTGCATCATTCCAATTTTTT G - CCTCCATGGTCACATGGCACTCTCC deletion Somatic Capillary sequencing 21937215 PD4116a 17 68033961 68033961 AGTGGCAAAGAGAGTTAAGAAAAAG A - AAAAAAAACTGAACTGTGTCAATTG deletion Somatic Capillary sequencing 21314072 PD4116a 1 177722220 177722221 CTACCATGTCTTGGCTCATCAATGG - TTTTT TTTTGGCTGTGCCTAAATTCTATGT insertion Somatic Roche 454 pyro-sequencing 21761495 PD4116a X 78381880 78381880 ACAAAATCCAATACCTTACCAAGAC A - AAAATTCCCAACCAAATAGGAGAAA deletion Somatic Capillary sequencing 21980234 PD4116a 6 152722335 152722335 GCACAGTTCATCAACGATTCTTCCA C - TTTTGTGAACCATGTTGTTATGTCA deletion homo_sapiens_core_58_37c SYNE1 ENSG00000131018 CCDS5236.1 ENST00000265368 c.6967delG p.V2323fs*5 Somatic Capillary sequencing 21468864 PD4116a 7 141617614 141617630 TTAACTGGGAGCTGATCAGACTCTG TCTGCGTGGGGGAGACA AT CAGTCACTTAGATAAGAGGTGGGGA complex Somatic Roche 454 pyro-sequencing 21569531 PD4116a 16 60246377 60246377 TGAAAGAATGTCTGACATTCGCTTT G - GGTGAAGTAGATTGCTATGGACTAA deletion Somatic Capillary sequencing 21280992 PD4116a 7 39202748 39202748 CAGCTAGAATCTGACAGAGAATATC A - AGCCCTGATCTACCTAAGGAAGTTT deletion homo_sapiens_core_58_37c POU6F2 ENSG00000106536 CCDS34620.2 ENST00000437026 Somatic Roche 454 pyro-sequencing 21704844 PD4116a 3 183536357 183536370 CCTGCCCCTCCAGAGCCAGGCTGCT TCAAGAGACCCAGG - TCATGGTGACTGCTTATGCCTGAAG deletion homo_sapiens_core_58_37c MAP6D1 ENSG00000180834 CCDS3247.1 ENST00000318631 Somatic Roche 454 pyro-sequencing 21704685 PD4116a 3 182110188 182110220 GAAACCACCAGGTGGACTCCTGAGC CTTTTTTAGAGCCTCATGGTTCAAACAGCTAGG - CTTCCTGCAGGTATAGTTCACAAAG deletion Somatic Capillary sequencing 21895113 PD4116a 9 7750942 7750942 AACAAAGAAGAGAAATAGATACACT A - GACTTTATAAAAGTTAAAACCTTTT deletion Somatic Capillary sequencing 21640355 PD4116a 12 80088967 80088974 TTATGCTCCTCTAACACCTTGAGAA TCATTTTC - TCTGTAGACTTCTTGTTTCCTGAAT deletion Somatic Roche 454 pyro-sequencing 21948003 PD4116a 8 60591108 60591125 CAGTCTATCTCTGAGCCAAAAGAGG TGTATTCCTTCAAGTTCC - TGTATCACTGGCATGCCTTTATGCA deletion Somatic Roche 454 pyro-sequencing 21640278 PD4116a 12 79490214 79490238 GGTCAGGTGGAACAATATACCAGCT AGCAGGGATCTTTTGATCTCCTGAG - AGACACTTTGCTAAGTGTGATTAAT deletion homo_sapiens_core_58_37c SYT1 ENSG00000067715 CCDS9017.1 ENST00000261205 Somatic Capillary sequencing 21276496 PD4116a 7 8072844 8072845 ACAATATTCAACAGTCATTCATGAT TA - AAAAAAAAAATCAACAAACTGGGAA deletion homo_sapiens_core_58_37c GLCCI1 ENSG00000106415 CCDS34601.1 ENST00000223145 Somatic Capillary sequencing 21329337 PD4116a 10 78657185 78657202 ATACAAGTATAAAATAAGGCTAGGC TGAAGCTTCTCTAGAAAA - TGTAAGAGGAATGTCAAAGGAATTT deletion homo_sapiens_core_58_37c KCNMA1 ENSG00000156113 CCDS7352.1 ENST00000286627 Somatic Capillary sequencing 21462672 PD4116a 7 117382664 117382664 CTATGTAAAAGTGAGGAGTTCCAGG A - AAGGGAGGCATAAAGTAAGATGGTG deletion homo_sapiens_core_58_37c CTTNBP2 ENSG00000077063 CCDS5774.1 ENST00000160373 Somatic Capillary sequencing 27773223 PD4107a 7 30008892 30008893 CGAGACCAGATATTGTTTAATACTC TG - TGGGATTAAATGAGCTCAGATTTGC deletion homo_sapiens_core_58_37c SCRN1 ENSG00000136193 CCDS5422.1 ENST00000426154 Somatic Roche 454 pyro-sequencing 27262483 PD4107a 21 22049207 22049212 TTCCTAGTTCAAGATCTTCTTCTGC AGGTAG - AACTTGGCCTACTCTTCAGCAACCT deletion Somatic Capillary sequencing 27897311 PD4107a 10 97213567 97213586 ATGTGGATGGCCAACTTTTCCTATA TGTGAGTACTGCAGGGCCCG - CTGCAGGACATAAGTCTGCTCAGAT deletion homo_sapiens_core_58_37c SORBS1 ENSG00000095637 CCDS31255.1 ENST00000371247 Somatic Roche 454 pyro-sequencing 27280173 PD4107a 8 42733537 42733538 TTAAAAGTATTACTCAAGTGAACAC AT - AAATGATAAAAAAGCAAAACAGCTT deletion homo_sapiens_core_58_37c RNF170 ENSG00000120925 CCDS6138.1 ENST00000240159 Somatic Roche 454 pyro-sequencing 27340885 PD4107a 17 55739596 55739612 TGAACAGCTGTGATGGGCTGTTGAA ATTAGATCTGTCAGGGG - ATGAGAACACCACGATGGCAGCCAC deletion homo_sapiens_core_58_37c MSI2 ENSG00000153944 CCDS11596.1 ENST00000284073 Somatic Roche 454 pyro-sequencing 27476571 PD4107a 2 55547560 55547560 ATAAGTTAGCAAATATAATACTGGC A - AACACACAAAAATTACCAGCCTATT deletion homo_sapiens_core_58_37c CCDC88A ENSG00000115355 CCDS33203.1 ENST00000263630 Somatic Capillary sequencing 27416856 PD4107a 8 107490758 107490759 TAGTAAGTAAGGAAGTTCTTGGCAA AG - AGAGTAACTATATAAAAAAGGATGA deletion homo_sapiens_core_58_37c OXR1 ENSG00000164830 CCDS47909.1 ENST00000445937 Somatic Roche 454 pyro-sequencing 27784664 PD4107a 7 40533370 40533371 TTAGATCAGCTTTTTAAATTTTTTT - T GCAGAATTTTTGTGGTTAATAAAAA insertion homo_sapiens_core_58_37c C7orf10 ENSG00000175600 ENST00000309930 Somatic Capillary sequencing 27556337 PD4107a 6 128661267 128661288 GGATCTGATTCTTAGACAAACTAAA AAGATTTATTGAGAACTTCAAG - AAGCATTGGAGTTCTCCAGTGGCTA deletion homo_sapiens_core_58_37c PTPRK ENSG00000152894 CCDS47473.1 ENST00000368226 Somatic Roche 454 pyro-sequencing 27396140 PD4107a 3 84523037 84523075 CCATATTCATGGATTGGAAGAATCA AAATTGTTAAAATGTCCATACTACCTAAATCAGTCCACT - TATTTAATGTAACCTCTATCAAAAT deletion Somatic Roche 454 pyro-sequencing 27770102 PD4107a 7 11548754 11548774 AAAACTTTAAAAATATACACTTTAC ATATAATTTTTAAATCTTTAA - ATATTAACTTTTAAATTTAACTTTA deletion homo_sapiens_core_58_37c THSD7A ENSG00000005108 CCDS47543.1 ENST00000423059 Somatic Capillary sequencing 27646724 PD4107a 9 3173940 3173942 GGTTCTGAATACACTCAGTTCATAG TTC - TTCTTCTAACTGCCAGGGGTATGAG deletion Somatic Roche 454 pyro-sequencing 27388983 PD4107a 3 34853314 34853314 TCTTGCCTTTTTTCATACATTCAGG A - AAAGTCACTAATTTGTGTTTCTTTG deletion Somatic Capillary sequencing 27393457 PD4107a 3 68041125 68041125 TTCTCTAAATATTTATAGCTCTTGT C - TTTCTAAGCACATGGTAGCATTACT deletion Somatic Capillary sequencing 27623838 PD4107a 2 223004538 223004538 ATAAACCATTTGCCAGTTGTTGTTG T - TTTTTGTTGTTGCTGTTTTATTTTT deletion Somatic Capillary sequencing 27707260 PD4107a 7 120356330 120356360 AAAAAATGAATAAAATTAGAAAGTT ATATAAAAATTGCTTTTTCTGATTTTATTTC - ATAGAGTTTAATTTAAGAAAAAAAA deletion homo_sapiens_core_58_37c KCND2 ENSG00000184408 CCDS5776.1 ENST00000331113 Somatic Roche 454 pyro-sequencing 27378298 PD4107a 16 87035926 87035952 AAATCAGCAATTCTATTCCTAGGTA TCTACTCAAGATAAATGAAAACCTATG AAA TGTTAAAACCTAGAAAACACAAAGA complex Somatic Roche 454 pyro-sequencing 27363114 PD4107a X 64588366 64588367 ACTGTTCATCCGTGGTTCTCTTTTT - A AAAATGGTATTATTTATAATTTATG insertion Somatic Capillary sequencing 27311427 PD4107a 9 71845174 71845175 GTAAGAACAGCCCAGCTCTGTTTCT AG - AAGTTACTTGTAAGGAGTGCACTTT deletion homo_sapiens_core_58_37c TJP2 ENSG00000119139 CCDS6627.1 ENST00000377245 Somatic Roche 454 pyro-sequencing 27651599 PD4107a 9 34844328 34844328 TTTATTATTTCTTTCCTTTCACTAA C - TTTGGGCTTAGTTTGTTCTTCTTTT deletion Somatic Capillary sequencing 27877303 PD4107a 5 17724687 17724687 TTTTTATTTGCAGGGCAATAGCAAT A - AAAAATTATGCTTGCCTAGCTATAG deletion Somatic Capillary sequencing 27556865 PD4107a 6 132601617 132601617 ATGAAGAGCTTAGCTGGATAATTTT C - TAACTCATAATACTGGCTCTCAATT deletion Somatic Capillary sequencing 27263127 PD4107a 21 24948952 24948998 ATTTTACATGTCACAATATCTTAAA AATCATTTCATATGTCACGATGCTTATAAGCAATACTTCTTATTAAT - AATATTTTATCTGTCTGCCTTCATT deletion Somatic Roche 454 pyro-sequencing 27763347 PD4107a 14 70488438 70488439 ATGGATGACTGGCTTTTTTTCCCCC - C CATAATGGAACTTCTTTTTCCCTGA insertion homo_sapiens_core_58_37c SMOC1 ENSG00000198732 CCDS32110.1 ENST00000361956 Somatic Capillary sequencing 27544058 PD4107a 16 13155010 13155011 TTAAACATAGTAAACACAGGAATGC - C TTTCAGGCCCTCCACACGGGGCCTG insertion homo_sapiens_core_58_37c SHISA9 ENSG00000237515 CCDS45417.1 ENST00000424107 Somatic Capillary sequencing 28000963 PD4107a 10 2531568 2531568 GAAACCCCATCTCTACTAAAAGTAC A - AAAAATTAGCCGGGTGTGGTGGCAC deletion Somatic Capillary sequencing 27370426 PD4107a X 146339697 146339698 AATGTTTTTAAGTAAATGCAAAAAA - A CAAACAATAAAAAATTCTCAGCATT insertion Somatic Capillary sequencing 27670833 PD4107a 18 27704164 27704164 AAAAGACCAATTTTTAAAAACACTT A - AAAAAAGAGAGAGAGGTCCATTCCC deletion Somatic Capillary sequencing 27984328 PD4107a 20 10594920 10594931 AAACAGATCCAGCTCTCAAAAGATG AAGACAGAATTC - ATGAAGTCCTACCTTGAGAACAATT deletion homo_sapiens_core_58_37c C20orf94 ENSG00000149346 CCDS33439.1 ENST00000334534 Somatic Roche 454 pyro-sequencing 27894674 PD4107a 10 78419125 78419125 GAACAGGTGAAACTCAGTACTAAGT A - AAAAAGATCACACTGACATTTAAAA deletion Somatic Capillary sequencing 27395799 PD4107a 3 82130637 82130661 TATAAAGCTTATTTGAATAAAAAGA CAAGAACAGTCACTCACAGAGATTG - TCTAGCAGCACTTCACAGACAATTG deletion Somatic Roche 454 pyro-sequencing 27950999 PD4107a 6 41388461 41388461 GACCATCCTGGCCAAAATGGTGAAA C - CCCGTCTCTACTAAAACTACAAAAA deletion Somatic Capillary sequencing 27646841 PD4107a 9 3897986 3898022 CATAGCATGACTGTAAGAGTGTTCC ATATGTAAGGACAATCACTAATTATGTTTGCATAAGT - ATATCACCATTACAGAGAGTAGAAA deletion homo_sapiens_core_58_37c GLIS3 ENSG00000107249 CCDS6451.1 ENST00000324333 Somatic Roche 454 pyro-sequencing 27873836 PD4107a 1 245059581 245059582 AACATGGTAAAACCCTTTCTCTATT - T AAATACAAAATTAGCCAGGTATGGT insertion Somatic Capillary sequencing 28037053 PD4107a 11 87183151 87183151 GAGATTGAAAAAAGCAAGGTGGAGT C - CTTGTGTCTTCTGGAGGAAAGTTTA deletion Somatic Capillary sequencing 27669998 PD4107a 18 22024574 22024611 TATGGCCCTAGCTTATCATTCATGA CACATCTTCTGTCATCTCATTCATACTCTAAGTTAAGC - TGTGTAAAGCTTCCTGAACTTTTCT deletion homo_sapiens_core_58_37c IMPACT ENSG00000154059 CCDS11886.1 ENST00000284202 Somatic Roche 454 pyro-sequencing 27482682 PD4107a 2 1060372 1060373 AAATTTTAAGAATCTACATGTTTTA - A AAAAACATTAAAAGTGATGCAATGG insertion homo_sapiens_core_58_37c SNTG2 ENSG00000172554 CCDS46220.1 ENST00000308624 Somatic Capillary sequencing 27410226 PD4107a 8 56263773 56263773 TTAAAACAAAAAAACTCCCCATTCA G - GACCTGAAAATAGCTTTTATTTTTT deletion homo_sapiens_core_58_37c XKR4 ENSG00000206579 CCDS34893.1 ENST00000327381 Somatic Capillary sequencing 27700681 PD4107a 7 77049901 77049902 TTAGCAATGATTAATAGAATAACTC TT - TAAATCTGCTTGGTTATTATTTATG deletion Somatic Capillary sequencing 27927567 PD4107a 12 114219857 114219881 TATGGCTGCTTTACTCAACTCTGCT ACAATGACAGAGTTGAGTCATTGCA - GCAAAGACCATCTGGCCTGCAAAAC deletion Somatic Roche 454 pyro-sequencing 27853243 PD4107a 1 219316189 219316189 AGAGCAGAAGAATTTGACATGGGAA T - TTTTTTTTAGCAGTAAAAGTACTGT deletion Somatic Capillary sequencing 27417511 PD4107a 8 112124854 112124855 TGTTGTACTACGCTTCGTGGTATAA AT - ATACCACGATTTATGTATTTATTCT deletion Somatic Roche 454 pyro-sequencing 27620576 PD4107a 2 202905060 202905060 TCTGCAGTTTATAAAACAAAACTAC T - CTGTACAACAACCCCATGCAACACC deletion Somatic Capillary sequencing 27701590 PD4107a 7 82504666 82504666 TTATTGAGTATAATCTAATGATTTT G - CAATAGTAATTATTCCTAATTCTCT deletion homo_sapiens_core_58_37c PCLO ENSG00000186472 CCDS47630.1 ENST00000432078 Somatic Capillary sequencing 27774102 PD4107a 7 35515223 35515223 TAAAGGGAGCCTTTCAGGTTGAAAC A - AAAGGATGTTAGTAACTCGTCTCCA deletion Somatic Capillary sequencing 27361495 PD4107a X 144383372 144383372 GTAGTGTGATGCCTCTGGCTTTATT C - TTTTTGCTTGGGATTGCTTTTGTGA deletion Somatic Capillary sequencing 27648813 PD4107a 9 16515513 16515516 TCCCACCAACTCCCCTCTGGCTGTC TGTT - TAGTGTCACTCAGTTGGGATGGATC deletion homo_sapiens_core_58_37c BNC2 ENSG00000173068 CCDS6482.2 ENST00000380672 Somatic Roche 454 pyro-sequencing 28022281 PD4107a 11 47836709 47836754 TGCTTGAATCCCAGAGGCGGAGGTT GCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGTGACAGA - GCAAGACTCCAACTCAAAAAAAGAG deletion homo_sapiens_core_58_37c NUP160 ENSG00000030066 CCDS31484.1 ENST00000378460 Somatic Roche 454 pyro-sequencing 27931379 PD4107a 12 85360309 85360320 AACATTCCCATTTCTCCACATCCTC GCCATCATCTGT ATC TGTTTCCTGACTTTTTAATGATCAC complex Somatic Capillary sequencing 27591239 PD4107a 3 196961962 196961964 CATGCCACAACAGTTTTCAGCACTG GAC - AACAAGCAGTACAGGACTACAATAC deletion homo_sapiens_core_58_37c DLG1 ENSG00000075711 CCDS3327.1 ENST00000346964 Somatic Roche 454 pyro-sequencing 27480746 PD4107a 2 86723207 86723241 TAATGTCCTTCTTTGGTGTCCTGAA ATCTTAAACTGAAATCTGTTTTGTCTGACAATTAT - ATAGATAACCCCAGCTTTCTCGTGG deletion Somatic Roche 454 pyro-sequencing 27732762 PD4107a 4 30396689 30396689 TTATGTGCATTTGTTTTTCTGTCTT A - AAAAAATGAAAATATCTTGAAGTCA deletion homo_sapiens_core_58_37c ENSG00000237496 ENSG00000237496 ENST00000424014 Somatic Capillary sequencing 27385186 PD4107a 3 7531858 7531860 AGTATACAAAAGTTATACATGAAAG ATA - ATATAATACAAATTTATTATTTTTC deletion homo_sapiens_core_58_37c GRM7 ENSG00000196277 CCDS43042.1 ENST00000357716 Somatic Roche 454 pyro-sequencing 27652033 PD4107a 9 37443647 37443654 AAAAAAACAAAAACAAAAAAACACC AGGATGTG - GTGGCGCATGCCTGTAATCCTATAG deletion homo_sapiens_core_58_37c ZBTB5 ENSG00000168795 CCDS6610.1 ENST00000307750 Somatic Roche 454 pyro-sequencing 27233799 PD4107a 13 29400987 29400987 AAGCAAATAACACTTAATAGGGAAG T - TTATTTTCCACACTTCATCAGATTG deletion Somatic Capillary sequencing 27890367 PD4107a 10 53613779 53613779 ACAGCAATTGTTTCTACTAAATGTT C - CCATGTATGGTATTTTGGAAGTCAG deletion homo_sapiens_core_58_37c PRKG1 ENSG00000185532 CCDS7244.1 ENST00000373980 Somatic Capillary sequencing 27624457 PD4107a 2 226870564 226870564 TGGCCAGGCTGAGAATTTTCCAGAT C - TTTGAGTTCTAAGTCCCTTTTGATT deletion Somatic Capillary sequencing 28001450 PD4107a 10 5207352 5207352 ATTTCAGACCCTACAACACCTCCTA G - GGGGATAGGATTTTTTCTCCATGGG deletion homo_sapiens_core_58_37c AKR1CL1 ENSG00000196326 ENST00000380510 Somatic Capillary sequencing 28042410 PD4107a 11 123883793 123883806 GGGGGAAAAAGTTAGATGAGTTTTA CTACTGAGAAGAAT - CACATACTGCAAGGTGAGTCCTTAG deletion Somatic Capillary sequencing 27555729 PD4107a 6 123818742 123818742 CAATTTTTCCCATTTGTCATTTTAT A - AACTTTCAATAATGAAACAGAAGTT deletion homo_sapiens_core_58_37c TRDN ENSG00000186439 ENST00000334268 Somatic Capillary sequencing 27802226 PD4107a 4 70759345 70759355 CATGGTGGCCACTCACTTGTAGTCT GAGCTATTCAG - GAGGCTGAGGCAGGAGGATCGCTTG deletion Somatic Roche 454 pyro-sequencing 28019283 PD4107a 11 29348997 29348997 AAGCCGTTGTAAGGCTTTTACTTTA C - TTTTTCTTATAGGAAAGATGGTTTA deletion Somatic Capillary sequencing 27264024 PD4107a 21 29746727 29746745 CTATGTTGAATAGAAATGGTAAAAG TGGGTATTTTTGTCTTTTC - TGGTCTCAGAGACCAGAATTTCTCA deletion Somatic Roche 454 pyro-sequencing 27477194 PD4107a 2 60564556 60564557 TGATTTGGGGAGCACCAAAGTCATC TG - TGTCTTAGTTGTGTGGGGCATTGAG deletion Somatic Roche 454 pyro-sequencing 27577347 PD4107a 3 100726940 100726940 TTAGTCATTCGTCTAATCTTTTTTC A - AGGTTTTTTTCTAGAGGGGTAAAGG deletion Somatic Capillary sequencing 27810267 PD4107a 4 126585060 126585067 TTTCACCCAAATCTGCCATCTAAAA TGACAAAT - TGATTAATGTGATTAAAATGGGTTT deletion Somatic Roche 454 pyro-sequencing 27618716 PD4107a 2 190044720 190044724 AATAACAGAAACAAACATTTGTTTC TCTTT - TCTTTTATTTTTTAAGAAAGGCTGT deletion Somatic Roche 454 pyro-sequencing 27431825 PD4107a 8 126419790 126419791 CGCCCAAACTGAAGTGCAGTGGTGT - CAATGGTGCA TCTCAGCTCACTGCAACCTCCTCCT insertion Somatic Capillary sequencing 27359999 PD4107a X 129565313 129565313 GACACTGTTTCTTCAGCTGTAAAAT G - GGGATGTGACCATTTTCTCAAGAGG deletion Somatic Capillary sequencing 27701212 PD4107a 7 79768913 79768913 ACAACCCTTCTATTTTATTATGTGT A - AAATGGCTTCTTAATTATGTAAAAT deletion homo_sapiens_core_58_37c GNAI1 ENSG00000127955 CCDS5595.1 ENST00000351004 Somatic Capillary sequencing 27391294 PD4107a 3 54010967 54010967 CATTATCATTAATGAGAATTATTTA T - TTATAGTTACAGATATTTAAATTAG deletion Somatic Capillary sequencing 27690098 PD4107a 20 44482298 44482327 ATTACAATATCAAAAGGCTGGTACT TACAAACAAATTAAAGAAACAAAGCACATA - TTTACTCCCAACTAGCATAAAGATA deletion homo_sapiens_core_58_37c ACOT8 ENSG00000101473 CCDS13378.1 ENST00000217455 Somatic Roche 454 pyro-sequencing 28036094 PD4107a 11 79029518 79029518 GACAACTGACTTTCCAGAAGAGGGG A - AAAAAAAGGCTTGATTTGTAGTGTT deletion homo_sapiens_core_58_37c ODZ4 ENSG00000149256 CCDS44688.1 ENST00000278550 Somatic Capillary sequencing 27815667 PD4107a 4 163168809 163168809 AGTTAAAGGTTACTTACCCAAAGTC T - TTAAAAACTAATCCTGAAGGCCTGA deletion Somatic Capillary sequencing 27648122 PD4107a 9 12077374 12077374 TAAAATGTAATTCTCAAGAAAAAAA G - CAAACCTAAAATTTAATAAAATAAT deletion Somatic Capillary sequencing 27627437 PD4107a 2 169845440 169845459 TTTTGTACGTTTCTATTTGTATGTT TTCTTCTGAGAAATGTCTAT G TCAGGTCTTTTGACCACTTTTTAAT complex Somatic Roche 454 pyro-sequencing 27266162 PD4107a 21 41757954 41757954 CTTTAGGTGGATCTAGCCCTGTAAC A - ACAAATCACTAGTACCGCTGGATCA deletion homo_sapiens_core_58_37c DSCAM ENSG00000171587 CCDS42929.1 ENST00000400454 Somatic Capillary sequencing 27995748 PD4107a X 55064674 55064674 ACATATTCATAATATGTAAAAAAAA T - TTTGCCTTTCCCCATTTAATAAATG deletion Somatic Capillary sequencing 27882007 PD4107a 5 32563779 32563796 ACAGCTCTGGGTCACTGAGCCCAAA CCTCTCATTTTACAAATA T AGGAAATAGATACACAGTGCTTAAT complex Somatic Roche 454 pyro-sequencing 27768766 PD4107a 7 4046824 4046824 CTGAATGAGAGCAATCAAGGAGGAA G - TTTTAGAAGGGGAATGTTTGCAGAG deletion homo_sapiens_core_58_37c SDK1 ENSG00000146555 CCDS34590.1 ENST00000404826 Somatic Capillary sequencing 27561136 PD4107a 6 162048241 162048255 CCCCGACTGCCTTATCAGTCATGCT AAGATGATCTTACCA - ATAATGAAATAGGATCTACTATTAT deletion homo_sapiens_core_58_37c PARK2 ENSG00000185345 CCDS5281.1 ENST00000366898 Somatic Roche 454 pyro-sequencing 27771988 PD4107a 7 23132442 23132442 CAACATTACAAAACTCCGTATCTAC A - AAAAATACAAAAATTAGCTGGGCGT deletion homo_sapiens_core_58_37c AC006039.1 ENSG00000249561 ENST00000504702 Somatic Capillary sequencing 27773381 PD4107a 7 31192683 31192707 CTCTCCCTCTCGGTCTTGCTCTCCG TCTCCCTCTTTCTACTGTCTCCCTC - TCTTGCGGAGCCTGGACTGTACTGC deletion homo_sapiens_core_58_37c AC006978.1 ENSG00000251425 ENST00000507825 Somatic Roche 454 pyro-sequencing 27776844 PD4107a 7 52492830 52492833 GGTGGGGTTTTATAGAATTGATAGA TCTC - TCTCTGTCTAGGCACACATACTGAG deletion Somatic Roche 454 pyro-sequencing 27744260 PD4107a 14 23986624 23986640 GAGCTATAATCCTGTAGACCCTGAG GCTGGGTCTACAGACTT - GCTGTAGCAAGAGCTTTCTCAGTAT deletion Somatic Roche 454 pyro-sequencing 27849052 PD4107a 1 192325654 192325654 AATGATTAAGTGCAAAACAAAGATG A - AATTATTTTTATGCTACCTGGAAGG deletion Somatic Capillary sequencing 27360910 PD4107a X 139322161 139322161 AGTTGTTATTAGGAAGATCTTTCAC T - TTTTTAGTTAATTCCCAGGTATTTA deletion Somatic Capillary sequencing 27663758 PD4107a 22 46460816 46460817 CTTATGCACACGTATACATATGCGT AC - ACACACACACGTATCCCAGGATGCT deletion homo_sapiens_core_58_37c MIRLET7A3 ENSG00000197182 ENST00000420473 Somatic Roche 454 pyro-sequencing 27279056 PD4107a 8 35346807 35346820 TCCCAAAGTGCTAGGATTACAAGTA TGAGCCACTGTGCC - TGGCCACCCAGAAAGTTCTAACACC deletion homo_sapiens_core_58_37c UNC5D ENSG00000156687 CCDS6093.2 ENST00000404895 Somatic Capillary sequencing 27360100 PD4107a X 130726567 130726584 GGAATGGAGCAGAGGAGCCATAGCG AAGAGACAGTGCAGTGGC - AAAAATCACTGAACCTTACTGACTA deletion Somatic Roche 454 pyro-sequencing 27444857 PD4107a 1 73265762 73265762 AGGCACAAATGTAATCATACATTTC T - TTTTAACCACAAATTCTTTCATGTG deletion Somatic Capillary sequencing 27701814 PD4107a 7 83667422 83667433 AACTTAGCAATAGGTATGTCACTAA GCTTAGAAAAAT - GCTTTTTCTTTTTATGGAAGCAGAG deletion homo_sapiens_core_58_37c SEMA3A ENSG00000075213 CCDS5599.1 ENST00000265362 Somatic Capillary sequencing 27558095 PD4107a 6 141174303 141174309 TTGTGACTATGAATTGTTCCATTAG TTGTTCC - TTTTATCAAAGAGATTGATGTCTCA deletion Somatic Capillary sequencing 27578777 PD4107a 3 110709757 110709757 ACCAACTATACACTCATAATTTTTT A - AAAAAACTAATGTATATGACTAAAA deletion Somatic Capillary sequencing 27634413 PD4107a 2 149423165 149423166 TTAGCATTATACAACTTATAATTAA - TTTTCCA TTTCCAAAAGTTGATTTATAATTCA insertion homo_sapiens_core_58_37c EPC2 ENSG00000135999 CCDS46422.1 ENST00000258484 Somatic Capillary sequencing 27420505 PD4107a 8 133212810 133212810 ACTTAAATATATGGGACCTAATCTT A - AAAACACCCCTGTCGTGTTAGATAA deletion homo_sapiens_core_58_37c KCNQ3 ENSG00000184156 CCDS34943.1 ENST00000388996 Somatic Capillary sequencing 27586519 PD4107a 3 165105122 165105122 AATAGTAGCTACCATTTATTAAACA C - CCACTGCATGACAGATAATGTGCTA deletion Somatic Capillary sequencing 27735356 PD4107a 4 47005227 47005255 AGTACCCTTTTCTATTTTATCTACC TGGAAAACACTTACATATCTTTAAAATTT - AGATTAAGTGCAGCTCACTTGTGAA deletion homo_sapiens_core_58_37c GABRB1 ENSG00000163288 ENST00000513567 Somatic Roche 454 pyro-sequencing 28040550 PD4107a 11 110585748 110585748 CACACCAACCATACACATGGGGCAT C - CACTGTAGGTAACATTTATTGATTG deletion Somatic Capillary sequencing 27547124 PD4107a 16 35086465 35086466 TGTATATTCAAGATTAATCTGTGTA - T TTTTTTGGCTTAATGACCTATTCCT insertion Somatic Capillary sequencing 27709530 PD4107a 7 134078759 134078774 CAAAACTAACCCCAACCACCATTTC CTCTGACATTTGAAAT - ATCATTCCCTTCCTCTTTAAAGAGG deletion Somatic Roche 454 pyro-sequencing 27990199 PD4107a 20 22172130 22172131 AAGGAGACATGCATGTGGCCAAAAA - A ACATGGAAAAAAATGCTCATCATTA insertion Somatic Capillary sequencing 27359401 PD4107a X 124230645 124230645 GTAATACTTGGTTATCCAGACCTAA C - AAACAATCCTAATTCCCCATGACAC deletion Somatic Capillary sequencing 27353938 PD4107a X 74026656 74026659 GTCCCAGAAACTATTTGTTGAAAAG TCTA - TCTTTTCCTTATTGCATTGCCTTTG deletion homo_sapiens_core_58_37c KIAA2022 ENSG00000050030 CCDS35337.1 ENST00000373468 Somatic Roche 454 pyro-sequencing 27850419 PD4107a 1 201232277 201232319 AGGCCAGGGCCTATGAACAGGGTCT GGTGAGCAGAGCCCAACTAGACCCACAGCCCAGCAGCTGGTGG - GGAAACTGATCTCGGAGAGGAAGCC deletion Somatic Roche 454 pyro-sequencing 27341799 PD4107a 17 62547769 62547800 AATTACTTCATTAAATCCTTTCTGC AGAGCCAAGAATTGAGCCTCAATGCCTCGTAA - AAATCTCCAGTTCACATAGAGCCTG deletion homo_sapiens_core_58_37c SMURF2 ENSG00000108854 CCDS32707.1 ENST00000262435 c.1771_1802del32 p.L591fs*5 Somatic Roche 454 pyro-sequencing 27815825 PD4107a 4 163884110 163884110 AAGCTTTAACATTGATCCTGTTCAG C - TTCTCAGATTTTCTTGATTGGGTTA deletion Somatic Capillary sequencing 27541440 PD4107a 16 14143039 14143058 CCCCACCACACAGAATTATCTGGCC CCAAGTGCCAATAGTGCTGA G GGTTGAGAAAACTTGGACTAAATCT complex Somatic Roche 454 pyro-sequencing 27731279 PD4107a 4 20426482 20426522 TTTATCAATCCACCTCAGTACCGTG GTAACTCAAATTTTAAAGTAACAATGAATGAGACTTTACTA - ATATCAGATTTGCAAGTCCAAATAA deletion homo_sapiens_core_58_37c SLIT2 ENSG00000145147 ENST00000504154 Somatic Roche 454 pyro-sequencing 27609133 PD4107a 2 124696078 124696089 CGTAGGACCCATACAAAGTGCCACT AGAGATGTTAGA - AGTACTCCCAAGACACAGAGAGATG deletion Somatic Capillary sequencing 27588574 PD4107a 3 179834203 179834235 ATACACAGCTGTATCAATTACACTG ATTTGAAAGAAACAAAACACCTTTTGTGCTTGT - CTTCCTCTGGGTTCTTTTTCATTCT deletion Somatic Roche 454 pyro-sequencing 27616468 PD4107a 2 174466180 174466217 AGACTCACCAGGAATTCTGTCCCTT TCTGTCAGTAGGATTCTTGCTGTCCCTGTACTATGGGA - TCTTTGTCTACTACCTTCTAGTCTC deletion Somatic Roche 454 pyro-sequencing 27986146 PD4107a 20 23413654 23413693 CACGGTGGCATATTTGGTTTGCATC ACATTTGGCTCTTATGGAAACATCTAAGACTGTCTTGGAA - AGTGAAATAATTTCCCCATCACTAG deletion Somatic Roche 454 pyro-sequencing 27614505 PD4107a 2 161403556 161403581 GGATTGCTTATTGTATGTTTAACCT CATAGGAAACTGTCAAACTCTTTTTC - AAAGCAGCTATAATACATATACATT deletion Somatic Capillary sequencing 27368163 PD4107a X 121742645 121742646 TGATCATTTCAATTCATGCTGAAAG - GT TATTTGACATAATTTAACATCATTT insertion Somatic Capillary sequencing 27338487 PD4107a 17 38522847 38522877 AAGCTCTTGAGCCTTTCATGGAACT GTCCTCCATCCAGCCTGGCTGGGCTTCCCAG - GTGCTGTCCCAGGGCCTGACAGTCC deletion Somatic Roche 454 pyro-sequencing 27355605 PD4107a X 88021081 88021093 ATGCAGCAAAAGGACATATCAATAG CAAATATATGCAC - CAAACACCTGAGTACCGAAATATAT deletion Somatic Capillary sequencing 27591855 PD4107a 3 178681154 178681185 GTTAAATACATTTTGAATTAAAAAT TGAAAGGAAAAGTAGAAACTAAGATTATCCTT ACATTTGAATTAAAAA TTGATTATCCTTCACCCAGTCTTCT complex Somatic Roche 454 pyro-sequencing 27673879 PD4107a 18 49177689 49177690 AATCGTATCCTCACTTTGCCTGTAA CT - CTCTCATTTCATTCGGACTCTCATC deletion Somatic Roche 454 pyro-sequencing 27943902 PD4107a 6 1841102 1841144 GTTCGGGTTGGTTAAAATGCCTCAG TGGCAGTTTGGAGCTCACCGGATCTGGCAGCCACTAATGACAT - TGTGAGGGCGACTGTTGCACCATCC deletion homo_sapiens_core_58_37c GMDS ENSG00000112699 CCDS4474.1 ENST00000380815 Somatic Roche 454 pyro-sequencing 27621958 PD4107a 2 211107324 211107340 CAATGTCTGTGCACCAGAGTGGTAC AGTTGTTAAGATGATGA - ACCTACATTGACACATCATTATCAC deletion Somatic Roche 454 pyro-sequencing 27556958 PD4107a 6 133353479 133353495 AGAGTCAAGATTTGAATAATTAGGT CCATTAGACTTCAAAGC - CCACACAATGATATGTGGAATGACC deletion Somatic Roche 454 pyro-sequencing 27633327 PD4107a 2 140843604 140843605 GTATCAGGCTGTCATTCTTTCTCAC - A ATACCCTTCTAATCCTTCCTTTTGC insertion Somatic Capillary sequencing 27970050 PD4107a 19 58929379 58929398 TGAGTTTATCCACCGCCATCCACCT CTATCCACCCCATAAGGTCC - CTACAGCAAGTGGGACAGCAGACCT deletion homo_sapiens_core_58_37c ZNF584 ENSG00000171574 CCDS12979.1 ENST00000306910 c.? p.? Somatic Capillary sequencing 27610554 PD4107a 2 133801453 133801487 ATTCTGTAATAGTTTTTTTTTTTTT TTGATTGACTAAAAGATAGACTGATTCAGTGATAC - TGATAGTACAGCAGTATGCTTAAAA deletion homo_sapiens_core_58_37c NCKAP5 ENSG00000176771 CCDS46418.1 ENST00000409261 Somatic Roche 454 pyro-sequencing 28004855 PD4107a 10 23215531 23215547 TAATTATATACCAACAGGAAAAAAC GTGGAAGACAGGGAGAG - GCTGAAAATACAGGTGTATATTATT deletion Somatic Capillary sequencing 27808595 PD4107a 4 115469696 115469702 TCTAATTAGCCTTTCCAAAGGAGGC AATCAGA - TATGCACTTCCCTCAGTGAGCAGAG deletion Somatic Roche 454 pyro-sequencing 27976289 PD4107a 17 7578263 7578263 TCCACACGCAAATTTCCTTCCACTC G - GATAAGATGCTGAGGAGGGGCCAGA deletion homo_sapiens_core_58_37c TP53 ENSG00000141510 CCDS11118.1 ENST00000269305 c.586delC p.R196fs*51 Somatic Capillary sequencing 27771293 PD4107a 7 19102823 19102823 CAGTCCATTCATGGAACATACTTAA T - TTTTTTTATTTTTAATTTTTGTAGG deletion Somatic Capillary sequencing 27233891 PD4107a 13 29881947 29881966 AGACCCCCAGACCACCAGCCCCAGT GAGAGCACAAGAGGAAGAGA - GAGGCCTTCACTGCTGGGGGACACT deletion homo_sapiens_core_58_37c MTUS2 ENSG00000132938 CCDS45022.1 ENST00000431530 Somatic Roche 454 pyro-sequencing 27447535 PD4107a 1 91077891 91077891 GTGTAAATGCTCATTATTACATAAA G - GATAGTCACTGCTTCATTCTAGGAA deletion Somatic Capillary sequencing 27598567 PD4107a 3 147097085 147097086 AAAAAGTAGTCCTTAGAATTTTTTT - T CACTGGCAACTACATGCCATTTAAT insertion Somatic Capillary sequencing 27866458 PD4107a 1 191584943 191584944 GGCATGCTAAATAAAGTGAGAAAAA - A AAAGTATATTTTAATTCTCAATTCT insertion Somatic Capillary sequencing 27518642 PD4107a 5 173182428 173182437 GAATGGGCCACTTCCAATGAGGGCT AAAGTGCGGG - AATGAGCAGGCTTCCCATCTCCAAT deletion Somatic Roche 454 pyro-sequencing 28032728 PD4107a 11 55576299 55576315 GCATACAGTGTTCTGCATTTCATCA TGAACTCTGAATGTAAT - TGTATTAGATTACAATAATTTGTAC deletion Somatic Roche 454 pyro-sequencing 27994847 PD4107a X 45666175 45666200 AAACAAAGTTGAGAAAAAGTGAAAG TAACACTACGCATTTCAGATTCTCCC - TATCAGATTCTACCCCAACCACGTG deletion Somatic Roche 454 pyro-sequencing 27821189 PD4107a 4 98919125 98919144 TCCGACTGCCTATGAAGAAGATATT AAAGAACGGAGTGCGAAAAG GA AAGCGGAGACACCAGTAAAAAGGCT complex Somatic Roche 454 pyro-sequencing 27731234 PD4107a 4 20113251 20113251 GTACTTCAAAATAAGAGAAAAGAAA C - CCAAAAAACAAAAAGAAAAAGCAAC deletion Somatic Capillary sequencing 27586979 PD4107a 3 168401630 168401666 TATTTTTAAGAAAACACATTAAAGC TCTGCCTTTTAAAAACTATCTTTTCTTGATGTTGTTT - TATGTAACTAAATAATTTGTCACTC deletion Somatic Roche 454 pyro-sequencing 27247271 PD4107a 13 77237437 77237477 AGCACCATGTCCTCATTCATTCTTG GGGGGAGAAAAAAATCTCTGCAAATTCCTTCTCATAGTTAT CA TTCCTTCCCTTGCATTCATGGGAAA complex Somatic Roche 454 pyro-sequencing 27410027 PD4107a 8 54775772 54775790 ATGTTGGTCAGGCTGGTCTCAAACT CCGGACCTCAGGTGATCCG - CCCGCCTCGGCCTCCCAAAGTGTTG deletion homo_sapiens_core_58_37c RGS20 ENSG00000147509 CCDS6155.1 ENST00000297313 Somatic Roche 454 pyro-sequencing 27311691 PD4107a 9 73557416 73557436 GTTATTTACAATTCAACTCCTGCTC TTGGTGAATCAAAACCTTGTT - TGGAAATTTCACTGTACAAGGCTTC deletion homo_sapiens_core_58_37c TRPM3 ENSG00000083067 CCDS43835.1 ENST00000377110 Somatic Roche 454 pyro-sequencing 27422314 PD4107a 8 145637572 145637604 TAAGCAAGTTTGATTCCTGTTTGGG GACAGGTCCCACCTGCTGCCCACACACCCGGGT - GAATTTCCCTGACCCCACTCCTCAG deletion Somatic Roche 454 pyro-sequencing 27849683 PD4107a 1 196452866 196452892 CACACCTTTCCTGCCACTCATCTCA GTGGAAACTTTATATTTATTTGTATAT - GTGTTTCTTTAATGGCTGTATCCTT deletion homo_sapiens_core_58_37c KCNT2 ENSG00000162687 CCDS1384.1 ENST00000294725 Somatic Capillary sequencing 28017637 PD4107a 11 20881946 20881946 CCTGAATGAATGAATAAATGGCAAA G - CTTCTCTAGGGGTCTGGATTCCTAG deletion homo_sapiens_core_58_37c NELL1 ENSG00000165973 CCDS7855.1 ENST00000298925 Somatic Capillary sequencing 27548405 PD4107a 6 70199896 70199909 GAGTTTTAGCTTTATGAGGATATCT TGCATGTTTGGAAA - TGCTACCTATTCAATTAAGAAGGCT deletion Somatic Roche 454 pyro-sequencing 27652936 PD4107a 9 14412287 14412289 CTCATCCATGTGTCTGACTCTCCCA TTG C AACAATTTACGCTTTCAGAAAAGGG complex Somatic Roche 454 pyro-sequencing 27948385 PD4107a 6 27127809 27127842 TTTTGCAGCTTTGAGTGAGCATTGC TAGAAATCTGGTATAAACAGGGGAATTGTGAGAT - TAAAAGCTTGCATTTTATGAATGCA deletion Somatic Capillary sequencing 27746938 PD4107a 14 42597071 42597088 AACGCCATAAGGCCAGGATGCTTAT ATGTTGAGATCAGAAAAA - ATACAGTTAAGAAAAACCTACTAAC deletion Somatic Capillary sequencing 27910014 PD4107a 10 82950429 82950430 TTAAATCCATATCACTAACCATGTA - C CCCCCCATTCCACTAACAGTATTCA insertion Somatic Capillary sequencing 28011863 PD4107a 10 22960085 22960086 CACCCACGTCCACACATATATATAT - TA CTTTACATATATTTATATATACACA insertion homo_sapiens_core_58_37c PIP4K2A ENSG00000150867 CCDS7141.1 ENST00000376573 Somatic Capillary sequencing 27619380 PD4107a 2 194924902 194924919 AGAGTGAGTATAGTAGGATTTATTA AGCAAAAGGAAAGCTCTC - AGCAAAGAGAAGGAGCCTGAAAGCA deletion Somatic Capillary sequencing 27353925 PD4107a X 73942621 73942621 GTCCATCAACAGAAGAATGAAAAAA G - AAAATGTGGTATGTATACACAATGG deletion Somatic Capillary sequencing 27319052 PD4107a 9 128648291 128648293 GAAAGTCTTTGTTCTTGTTTATAAA AAT - AATGTTAATAGTGACTGCTAGGTAT deletion homo_sapiens_core_58_37c PBX3 ENSG00000167081 CCDS6865.1 ENST00000373489 Somatic Capillary sequencing 27536369 PD4107a 16 8296973 8296973 ATTTACAAAAGTAATCATGAAAAAC A - AAAAAAAGAAACCCTACACGCGTCT deletion Somatic Capillary sequencing 27996193 PD4107a X 53686704 53686715 TGTAACAAGTGTACCACTCTAGTGG GAGATGTTGATA T ACAAGGGAGGCTATGCCTGTGTGGA complex Somatic Roche 454 pyro-sequencing 28043002 PD4107a 11 127675615 127675615 ATCCTGTCTCTGTATTCTTTTTTTT A - AAAAAAAAGATCTTCATAAATACTG deletion Somatic Capillary sequencing 27681778 PD4107a 18 38384030 38384031 GATAAACATTAAATTTCTGAAAGAG - A AAAAATAATTACTTAAATGTTTTCA insertion Somatic Capillary sequencing 27557039 PD4107a 6 133961207 133961209 AGCATACTTGCTAGTTTTATATTTA AAC - AATATGTAGCCCTATGACAATGCCA deletion Somatic Roche 454 pyro-sequencing 27247260 PD4107a 13 74720317 74720328 AGGTTTAAATGGTCAGAGACCTTTA AATAAAAAAGAA GC CATTAAGCAAACATCTTAGCCATAG complex Somatic Roche 454 pyro-sequencing 27442421 PD4107a 1 56708244 56708270 GGCTAGTCTCAAACTCCTCACCTCA TGATTTGCCTGCCTTGGCCTCCCAAAG - TGCTGAGATTACAGGTGTGAGCCAC deletion Somatic Roche 454 pyro-sequencing 27395830 PD4107a 3 82338532 82338532 TCTGAGAAATATAGGATTACGTATA G - TGACCAAACCTGGAACTCATTGGAA deletion Somatic Capillary sequencing 27578038 PD4107a 3 105809232 105809278 GTTGGACAGTGTAAATAACTAGCCC AAGGTTATACCTGTATTACTAGATAGTTAGGGTAAACCTATATTCCT - AGCTTTCACTTCAAAGTTCAAGTGA deletion Somatic Capillary sequencing 27424136 PD4107a 8 57756842 57756843 TATTGTGGAAAAACTCCCATAAAGC - T TTTTTTAAAATAATCAAACAACAAC insertion Somatic Capillary sequencing 27708316 PD4107a 7 127408310 127408326 TTTTAACTGACTACTTTTCTATCTT GTTCACTGTTCATTCTC - AAAGGTCCTTATACTTTTCCCTTAT deletion homo_sapiens_core_58_37c SND1 ENSG00000197157 CCDS34747.1 ENST00000354725 Somatic Roche 454 pyro-sequencing 27802526 PD4107a 4 72756321 72756321 CAACTTGGGTTGAGAAAAGAGCTAG T - TTTGAAGAAAGTTGTGTGTGTGTGC deletion Somatic Capillary sequencing 27267059 PD4107a 21 47123614 47123629 TTCGGGGGGCATGAACAGAAGAAGG AGCACATTCATCAGGT - AGGATGGTGGTGGCTGTGACCAGGG deletion homo_sapiens_core_58_37c PCBP3 ENSG00000183570 CCDS42974.2 ENST00000400314 Somatic Roche 454 pyro-sequencing 27891090 PD4107a 10 57195532 57195535 GGATTTATAACTGTCGTAAAAAGCC ATAG - ATAGTACATTGGCAGAGAAGTTACA deletion homo_sapiens_core_58_37c PCDH15 ENSG00000150275 ENST00000373957 Somatic Roche 454 pyro-sequencing 27578497 PD4107a 3 108839194 108839196 ACACAGAAAGCAAATGCTATTAAAT TGA - TGATATTAAAAGAGGCCAAGGACCC deletion Somatic Capillary sequencing 27673194 PD4107a 18 44872680 44872680 TTGGCCTGACTGCTCTCACCAGGAA G - GATGGATTTGTCAGGGAAGGGTGGT deletion Somatic Capillary sequencing 27511205 PD4107a 5 115307742 115307771 TTCCAGGAATATTCGTGTATAAGCC TTTTTATGAATTCAGTTGTAAATTCAAGTA - TTTTTATGAATTCAGTTGAAAATTT deletion homo_sapiens_core_58_37c LVRN ENSG00000172901 CCDS4124.1 ENST00000357872 Somatic Roche 454 pyro-sequencing 28039460 PD4107a 11 103106020 103106020 GAATCTTGTGCTTTATTTACAATAA C - CTTTTTGCTAATGGGTCTTCATGCT deletion homo_sapiens_core_58_37c DYNC2H1 ENSG00000187240 CCDS44717.1 ENST00000398093 Somatic Capillary sequencing 27368680 PD4107a X 126912088 126912089 GGGCTGGCTTGCGACTTGTGAACAT - A AAAAAAATGACAAATGTATTATTGG insertion Somatic Capillary sequencing 27617806 PD4107a 2 184361710 184361731 TGTTTATTTTCCATTTCAACAATTT TTCTAAATATGACTTTTAATTC - TTCAAACAAACCACTGGAGATAATT deletion Somatic Roche 454 pyro-sequencing 27710896 PD4107a 7 141673801 141673835 TAAATCCAGGTGTTCCTGTACAACC GCCTTCCCAGAAGGCCATAGCACAGCATCACGGAT - GCAAACAAAACAGGGCCTCAATTTC deletion homo_sapiens_core_58_37c MGAM ENSG00000179087 ENST00000465654 Somatic Roche 454 pyro-sequencing 27672203 PD4107a 18 37995263 37995263 GTCACGAGCTTATGGTAATGATTTC A - GGTCAGATACATCATGTGTGAGTCT deletion Somatic Capillary sequencing 27707930 PD4107a 7 124831211 124831211 TCAAGTTAATCTAAAAAATAGAAAA G - GGGAGACTATTTCCAAACTCATTCT deletion Somatic Capillary sequencing 27551046 PD4107a 6 88263253 88263262 TGTGTTCAACTGCCATTGCAATATG AAAGCAGCCA - ATGTAGATGATGTAAACAAATGTGC deletion homo_sapiens_core_58_37c RARS2 ENSG00000146282 CCDS5011.1 ENST00000369536 Somatic Roche 454 pyro-sequencing 27395555 PD4107a 3 80195397 80195397 TTAATTTTTTGGAATGTTTTAAGAC T - TTTTTTTGGTCTAACATATTGTTAT deletion Somatic Capillary sequencing 27583492 PD4107a 3 143804994 143805024 CTAGAGGACATTACCAAACATTTGG ATGTTTGCCAGTGTTACGTGTAAAAACTGGT - ATCGCAGCCTAGCTTTAATGCACAT deletion Somatic Roche 454 pyro-sequencing 27819490 PD4107a 4 185965428 185965429 CATCTGTAAAGTTTGATTTCTTAGG AA - AAAAAGAGCTAGGCCAGGCGCAGTG deletion Somatic Capillary sequencing 27809872 PD4107a 4 124024128 124024132 TTAAGCTTTGCAACACTTAATTGAC ACATG - CGTCAGAATAAGTTTGGAAAAAAAT deletion homo_sapiens_core_58_37c SPATA5 ENSG00000145375 CCDS3730.1 ENST00000274008 Somatic Roche 454 pyro-sequencing 27777149 PD4107a 7 54103052 54103057 AGTTTTTAAAAATTTTTAAACAAAA TATAAT - TAAACTTATTTAGATAGAGATCTGA deletion Somatic Roche 454 pyro-sequencing 27670581 PD4107a 18 26107800 26107800 TGTAAAATATTGGTTTATAATTTTT G - TTTTTTATGATGTCTTTATGTGGAT deletion Somatic Capillary sequencing 27264768 PD4107a 21 33790181 33790196 CCCAAGACTTCTGATGTAATTGGCC CTGGGAGAGCCAGTCA - CTGATCTCTTTTTGAAAGCTCCCCA deletion homo_sapiens_core_58_37c C21orf63 ENSG00000166979 CCDS13614.1 ENST00000300255 Somatic Roche 454 pyro-sequencing 27810574 PD4107a 4 128626475 128626501 TTTCCATTCTCAGAATTCAGTTATT TTCTAATTTTGTCAAATACTGAAGCTA - TGCTGTGCAGAAGGGATCTTGCTTT deletion homo_sapiens_core_58_37c INTU ENSG00000164066 CCDS34061.1 ENST00000335251 Somatic Roche 454 pyro-sequencing 27295965 PD4107a 15 84102837 84102845 CTGAGACTGCATAGCCAAAGTACCC AGTTTAGAG - AGTTAAGAAATTTCAGGTATTCAGG deletion Somatic Roche 454 pyro-sequencing 28020302 PD4107a 11 35765188 35765190 CTTCTGCCTTCCTCTAATTTATTCT TTC - TTTTCTTTTTTTCCACCACGTTTAT deletion homo_sapiens_core_58_37c TRIM44 ENSG00000166326 CCDS31461.1 ENST00000299413 Somatic Roche 454 pyro-sequencing 27881288 PD4107a 5 42247293 42247337 GGTTGCTGCAAAGGTCTCTGAAATG CCCTGGAAGCATTTTCCCAGTTTCCTTGGCTATTAGGAATAGGCT - CTTCTTTACTTATGCAAATTTCTGC deletion Somatic Capillary sequencing 27450231 PD4107a 1 108289612 108289632 CGCCTCTCAGGTTCAAACAATTCTC CTGCTTCAGTCTTGCGAGTAG - CTGGGACGACAGGCATGTGCCACCA deletion homo_sapiens_core_58_37c VAV3 ENSG00000134215 CCDS785.1 ENST00000370056 Somatic Roche 454 pyro-sequencing 28020199 PD4107a 11 35134401 35134424 GGCCATCTCACCAAGATGGTATGGG AGCAGTGACTGGGAGGAGACCCAA - AGCCAAGGTGGGAAGGTGTCACCAG deletion Somatic Roche 454 pyro-sequencing 27848417 PD4107a 1 188649276 188649277 AAAATCTATATTATTACAAAATAAA AT - ATGTTATATTTTATAATATATATTT deletion Somatic Capillary sequencing 27369861 PD4107a X 141501343 141501344 GCCAATGACATTCTTCACAGAAATA - A AAAAAAAATCCCAAAATTTATATGG insertion Somatic Capillary sequencing 27550322 PD4107a 6 82600923 82600929 GTACAGAGCTTCAGCCTAATGACCT AGTGCCG - AGTTTCAGAATGCATTGTGAAAATC deletion Somatic Roche 454 pyro-sequencing 28015341 PD4107a 11 6857237 6857251 TCCAACTTGAGGTCATAATTTTTAT TTTTATTATTACTGC - TTTTATTACTGCTATATAATATGTG deletion Somatic Roche 454 pyro-sequencing 27562459 PD4107a 6 170276112 170276112 ATTTATTTGGATTTTCTCTCTTTTT C - TTAGCCTAGACAAAATTTTGTTGAT deletion Somatic Capillary sequencing 27361926 PD4107a X 148323707 148323722 CCTGGTAATAAATTTATAATAATAG CTAACGTATTATTGAA - TATGACTATTAATTTATTTAATATT deletion Somatic Roche 454 pyro-sequencing 27735606 PD4107a 4 48691704 48691704 TATCCTTGCGGAGTTTACATTCCAG T - GGGAGCTTAAGCCTTTTGGAGTTAC deletion homo_sapiens_core_58_37c FRYL ENSG00000075539 CCDS43227.1 ENST00000358350 Somatic Capillary sequencing 27421324 PD4107a 8 138784227 138784227 TTACATGTTAGGGTTTTGGCTTCAG C - TTCAGTAAGCACTTCTACACTGCTG deletion Somatic Capillary sequencing 27616967 PD4107a 2 178378544 178378544 AATATTGTATTCATTTATCTTTTTT T - AGGGTGGTAGATCTCTGTAGAAATG deletion homo_sapiens_core_58_37c AGPS ENSG00000018510 CCDS2275.1 ENST00000264167 c.1608-3delt p.? Somatic Capillary sequencing 27674315 PD4107a 18 51440922 51440935 TTTTTGTTTTGTTGTTGTTTTGGAT TAGAGATATCCCAA - TAGGTATCAGGTGAAATCTCACTGT deletion Somatic Roche 454 pyro-sequencing 27983671 PD4107a 20 6419719 6419719 TAAAAATGGCTGGTTTGACAATGTC A - AAGCAAATTTAATTGGTAAATATTA deletion Somatic Capillary sequencing 27257523 PD4107a 13 88045232 88045233 TAATAATGTAAGATAAATACAAATA - A AAAAAAATTACTCTTGGAAACAAGG insertion Somatic Capillary sequencing 27774325 PD4107a 7 36734378 36734383 ACTTCATTTTTCAACTCACTTCAAT ATTTGC - ATTCTAAGGCCAATAGTTAGACATA deletion homo_sapiens_core_58_37c AOAH ENSG00000136250 CCDS5448.1 ENST00000258749 Somatic Roche 454 pyro-sequencing 27717941 PD4107a 7 81363861 81363862 TTTTAAGATTTGAACAGATTTTTTT - T AGACAAAGAGTATTCACTGTTGTCT insertion homo_sapiens_core_58_37c HGF ENSG00000019991 CCDS5597.1 ENST00000222390 Somatic Capillary sequencing 27624439 PD4107a 2 226687893 226687893 GTTACTCCAGGGGTGCATGAAAAAG A - AAAAAAAGAAAAAGCACATACGTAA deletion Somatic Capillary sequencing 27579846 PD4107a 3 117826759 117826759 GGTGGAGCATTTTAATTAGTATTTG A - AAGATTGTAATCCAAACTGTAACTG deletion Somatic Capillary sequencing 27356903 PD4107a X 100148130 100148130 ATCTTGAAAATTTGAGCTGGTAGAA G - CAGAGAGTAGAATAGTGACTACTAG deletion Somatic Capillary sequencing 27517861 PD4107a 5 167129347 167129347 GCTGCTTGGGTTTTACTATCATGTC T - TTCCATGGGAAAGTTCTGCCTTTCA deletion Somatic Capillary sequencing 27477384 PD4107a 2 61531284 61531311 CTGACCGCAAATGATCCGCCTGCCT TGGCCTCAAAGCCTTGGGATTACAGGCA - TGAGCTACCACGCCTGGCAATATTT deletion homo_sapiens_core_58_37c USP34 ENSG00000115464 CCDS42686.1 ENST00000398571 Somatic Roche 454 pyro-sequencing 27897882 PD4107a 10 100755220 100755220 TCCTGATGTATCCCCCTTCAGGTTT G - TTTTTTCAGTGTCCAGAAAAACTTA deletion homo_sapiens_core_58_37c HPSE2 ENSG00000172987 CCDS7477.1 ENST00000370552 Somatic Capillary sequencing 27497688 PD4107a 19 19892486 19892495 ACATGAGTTTTTCTTTTAACTCACG AAAAGCTCGT - TGCTGTTGGTTGTAATAGATGTAGT deletion Somatic Roche 454 pyro-sequencing 27360864 PD4107a X 139052480 139052496 GGGACAGCAGCCCCCAGCCACACCT CTGTAGCACAGGGGATG - CTGCTGAGGTAGAATGAATCTGACA deletion Somatic Roche 454 pyro-sequencing 27303390 PD4107a 15 52497721 52497722 GGGGCTTTAGGATTTCAAAAATACT - G GCTACGCCAAGAAGTAGAAGTACCA insertion homo_sapiens_core_58_37c MYO5C ENSG00000128833 CCDS42036.1 ENST00000261839 Somatic Capillary sequencing 27376410 PD4107a 16 80566877 80566898 TTGTATATATAATCTTCAGAGTTAT TAGGTATAATTAGGGGAAACAA - TAGGCAGAAGCATGTCTACTTCATC deletion Somatic Roche 454 pyro-sequencing 27855751 PD4107a 1 235144033 235144043 ATGACAGTTTCCCAAAAAAATTAAA CATAGAATTAC - CATATGGTCCAGCAATTCCTCTCCT deletion Somatic Roche 454 pyro-sequencing 27780522 PD4107a 7 12295930 12295931 GAAGATAATGTCATGACTTCCTTGG - T GGAAACTTCTAGTTGTCTCACAACA insertion Somatic Capillary sequencing 28021559 PD4107a 11 43278342 43278342 TGTGAAACCAAGTTTTACGAGTATT A - AAACTAAATCCAGTCAGTTCATGAA deletion Somatic Capillary sequencing 27669529 PD4107a 18 18891492 18891492 TGAAGATAATCCTCTGAAAAATGTT A - AATTTTGCCCTAAGCGGCACCCGTC deletion homo_sapiens_core_58_37c GREB1L ENSG00000141449 CCDS45836.1 ENST00000424526 Somatic Capillary sequencing 27919527 PD4107a 12 57235447 57235472 GGATTGTTACATAGGTAAACGTGTA TCATGGGGTTTGTTGTGTAGATTATT - TCATCACCCAGGTATTAAGGCTAGT deletion Somatic Roche 454 pyro-sequencing 27512706 PD4107a 5 126264177 126264177 TAAGTAAAGGAGATTGTCAAAAAAA T - TTTTTTTAAAATGTTCAATTCTCAG deletion homo_sapiens_core_58_37c Mar-03 ENSG00000173926 CCDS4141.1 ENST00000308660 Somatic Capillary sequencing 27891400 PD4107a 10 58840399 58840399 TTGTTTTGCAAAAACGTATTCACTT C - CTTTGTCCATTTTTAATTGACTTGT deletion Somatic Capillary sequencing 27612243 PD4107a 2 145950750 145950757 AAATCATGGTAACAAATTCTAAAAG ATAGATAT - ATAAAATAAAATGTCTATGAAGTGT deletion Somatic Capillary sequencing 27473754 PD4107a 2 38110671 38110692 AAGAGTTTAAATTGCATGTATGAAT ATGGTCTGGTGTTGTAATTCCA - ATGACAGGAAAACATTATGGAATGG deletion Somatic Roche 454 pyro-sequencing 27594925 PD4107a 3 117779097 117779098 TTTCCACTGTTAACTTTTTCTATTT - T TTTTTACCGATATTCACAAATAAAA insertion Somatic Capillary sequencing 27810649 PD4107a 4 129106401 129106405 GTTCTGTTTTTGTTTTTTGAGGAAC TTCTA - TTCTGTTTTCTGTAGTGGCTGTACT deletion homo_sapiens_core_58_37c LARP1B ENSG00000138709 CCDS3738.1 ENST00000326639 Somatic Roche 454 pyro-sequencing 27240201 PD4107a 13 71325698 71325698 GATCATCACATGCTCACAAAATCTG T - TTTTTTTTCTAACAAAAGATACTTC deletion Somatic Capillary sequencing 27770498 PD4107a 7 14086176 14086176 TGAATGTGTCTTAAGGTGTTCCAAG T - TTTTCCTCTGTATTTATCTTTCTTA deletion Somatic Capillary sequencing 28036131 PD4107a 11 79446981 79446981 ACGTATTATTTTGCACAAAACTTAG A - AAAAAATATTAAATGCTAAAAAGGA deletion Somatic Capillary sequencing 27771756 PD4107a 7 21929394 21929426 TCTCAGACAAACCTCCTCCAAAGGC AAGAAAGTTGGCCACTGTGTAGAGAGCTCTACA - ATGATGGCCCCATTAGCAAAAAGCA deletion homo_sapiens_core_58_37c DNAH11 ENSG00000105877 ENST00000328843 Somatic Capillary sequencing 27393417 PD4107a 3 67788202 67788202 TTCAAAAGCCCAGGAATATGTCGCA T - TTTTTCTGGTATGCCATTTTTGTAA deletion Somatic Capillary sequencing 27579493 PD4107a 3 115899429 115899429 CTTCTTATGATGTAATAAATTGCTC T - TTTTCAAGGTTGAGGAAGTAGAGGA deletion homo_sapiens_core_58_37c LSAMP ENSG00000185565 CCDS2982.1 ENST00000490035 Somatic Capillary sequencing 27362987 PD4107a X 145513047 145513056 CATATGTTATGCATTCTGCATCCAT GTGATAAATA AT TTTTGACTACACAGATTCTTTATAA complex Somatic Roche 454 pyro-sequencing 27769425 PD4107a 7 7496249 7496276 AACAGCCCTATTTTCTTCTTCCATG AAATTGAGAAAACAAAATTAAAGTTACC - AGCAAGAAGAACATAATTCATTCTT deletion homo_sapiens_core_58_37c COL28A1 ENSG00000215018 CCDS43553.1 ENST00000399429 Somatic Roche 454 pyro-sequencing 27371780 PD4107a 16 48841823 48841823 ATTTAGAAAATATTTTGAACCAAAC A - AAAATAAAAACACTACTTACAAAAA deletion Somatic Capillary sequencing 27750511 PD4107a 14 68432788 68432794 AGTTAGCATTTACTTTTATAGCTAA AGGATAG - AGGGAAATAGCTACAGTAGGTTTCT deletion homo_sapiens_core_58_37c RAD51L1 ENSG00000182185 CCDS9789.1 ENST00000487270 Somatic Roche 454 pyro-sequencing 27446990 PD4107a 1 86863765 86863765 AGGTCTCTTCATTAGTTCTGGTAAA T - TTTTTGCTGTACAAATTAAGTAGAA deletion Somatic Capillary sequencing 27617578 PD4107a 2 183036408 183036408 GGGCTAATTATTGGGGGTATATAAC A - AAGTCTTGAGTCTGTCCTTGGTGTG deletion homo_sapiens_core_58_37c PDE1A ENSG00000115252 CCDS2285.1 ENST00000435564 Somatic Capillary sequencing 27350679 PD4107a 17 66137594 66137595 ATTTTTTGTTATGGAACTTTTAGGT - A AAAAAATCATTTTCTGTTTTTACCT insertion Somatic Capillary sequencing 27649095 PD4107a 9 18276611 18276637 CACAGTTCTGCAGGCTGTACAAGAA GCGTGCTGCCAGCACCTGCTTCTGGTG - AGGTCTTCAGGAAGCTTACAATCAG deletion Somatic Roche 454 pyro-sequencing 27578680 PD4107a 3 110038475 110038475 GCCAGCTGCCAAGTCAGGAACAGCC A - AAAGAAGAGGCTCAATTGGCAAGGA deletion Somatic Capillary sequencing 27895288 PD4107a 10 83105665 83105667 TGGTGTTTGTTGTTGTTGACAGTTC ATT - GTGACTCCTGAAGTCTCTACTAGTT deletion Somatic Roche 454 pyro-sequencing 27760240 PD4107a 14 43895705 43895706 ACCAATGACTTTATTTACAGAATTA - A AAAAAACTACTTTTAATTTCATATG insertion Somatic Capillary sequencing 27475934 PD4107a 2 51485703 51485703 ACTATAAGAAAGTTGGGTTTAGGAG C - CTTTTTCACGGTAGCCTACTGATGT deletion Somatic Capillary sequencing 27692255 PD4107a 20 59686852 59686879 CCGAGACCCTGCTTATAAGGTCAGT ATCATCTGCCTAGCACAGAGTTCAGGCC - ATGCTTTCCAGCACCCAGTCCCTGA deletion Somatic Roche 454 pyro-sequencing 28015908 PD4107a 11 9928170 9928172 TTAGGTTGAAAGAGGGAAAAAATTT ACA - ACAATAAGTCTACAACTATTGACAC deletion homo_sapiens_core_58_37c SBF2 ENSG00000133812 CCDS31427.1 ENST00000256190 Somatic Roche 454 pyro-sequencing 27465695 PD4107a 1 101077571 101077572 AAGAATAGAATAATTTGCCTGAATC - GACAACAG ACAACAGGCAATGACAAATTCTTTA insertion Somatic Capillary sequencing 27313550 PD4107a 9 85944822 85944852 ACTAGCTGAGTAGAAACTCTAGGAA ATACCTCCAGCAAAGTCTATCAGGGTTCTTT - ATGGTAAAAGCAATCTTATTCTTGA deletion homo_sapiens_core_58_37c FRMD3 ENSG00000172159 CCDS43840.1 ENST00000304195 Somatic Roche 454 pyro-sequencing 27475735 PD4107a 2 50230107 50230107 AACCTCAGAGGAATCTAGGCAACTC T - TAAAAAGCCTCAAGCCCTTTCCAAA deletion homo_sapiens_core_58_37c NRXN1 ENSG00000179915 CCDS46282.1 ENST00000404971 Somatic Capillary sequencing 27772538 PD4107a 7 26176243 26176256 TGCCCACACTGGTCTCGAACTCCTG ACCTCAGGTGATCC - ACCCACCTCAGCCTCCCAAAGTGCT deletion Somatic Roche 454 pyro-sequencing 27808180 PD4107a 4 112602385 112602385 AATTGAAACAAATATGGAATACTAA A - AACTTAAAATGTGCAATATTGAGTT deletion Somatic Capillary sequencing 27998866 PD4107a X 35867890 35867891 TAAGGCGTTTTCCTACCCCCTTACT - T TTTTTTCCTAGGAGTGTTTCCTTAA insertion Somatic Capillary sequencing 27362610 PD4107a X 154149287 154149289 CCTCTTTCTTCAGCTTGAAGAACTC CTA - CTAGCATTTCTTATAAAGCAGATCT deletion homo_sapiens_core_58_37c F8 ENSG00000185010 CCDS35457.1 ENST00000360256 Somatic Roche 454 pyro-sequencing 27316669 PD4107a 9 110923024 110923032 AATTGGAGTTCAGGGAAAATAACAT AAAGAGCAA - AATCGCATGCTGACACTTCAATAAT deletion Somatic Roche 454 pyro-sequencing 27581909 PD4107a 3 132089747 132089780 TGCAGATAATACAATAATACAGAAG AGTATAAAATGCAAAGTGAAAGGTCTTCCTAACC - AGTTTCAATCACTAGTGGCAATCCT deletion Somatic Roche 454 pyro-sequencing 27409229 PD4107a 8 48509790 48509803 GCAACTGGCAACACACTACCTTTTT TTTTATACTTTAAG - TTTTAGGGTACATGTGCACAACGTG deletion homo_sapiens_core_58_37c KIAA0146 ENSG00000164808 CCDS43737.1 ENST00000297423 Somatic Capillary sequencing 27533377 PD4107a 5 167489361 167489362 ATATGCCACTTCACATCCACTACAA - G CCTATAATTAAAAGATGGACAATAA insertion homo_sapiens_core_58_37c ODZ2 ENSG00000145934 ENST00000403607 Somatic Capillary sequencing 27360482 PD4107a X 135224546 135224554 CAGGGGCAGAGGTTGCAGTGAGCTG AGATTGCGC - CACTGCACTCCAGCCTGGGGACTCC deletion Somatic Roche 454 pyro-sequencing 27702798 PD4107a 7 90727829 90727832 GAACTTAAAATAAAAAAAGAAAGAA AAAG - AAAGAAAGAGAAAAAAAAAAAGAAA deletion homo_sapiens_core_58_37c CDK14 ENSG00000058091 CCDS5619.1 ENST00000265741 Somatic Roche 454 pyro-sequencing 27920841 PD4107a 12 66448759 66448762 CATTAAAGGAATTTCCCAATGAATG AAAA - AAAATTCTCCAAACATATGAGTGGC deletion Somatic Capillary sequencing 27357413 PD4107a X 104797028 104797028 AGTAAGAAAAAAATTGTAAGAAGAA G - TTTTAACTAGAATTTCCTAGTAGAT deletion homo_sapiens_core_58_37c IL1RAPL2 ENSG00000189108 CCDS14517.1 ENST00000372582 Somatic Capillary sequencing 27361702 PD4107a X 146082060 146082060 AAAGTAAGTTTGTTAAGAAAGGAAT A - AAAGAATGGCTACTCTATAGGCAGA deletion Somatic Capillary sequencing 27591406 PD4107a 3 94788785 94788810 TTAATGAAATGATCATAAGATACAT GTATGAACAATTATACACCAAAAAAC CA TAGATAATCTAACAGAAATAGATAA complex Somatic Roche 454 pyro-sequencing 27557517 PD4107a 6 137117922 137117923 TGTGGAAAATGATGTTGGTAGTTTC TT - AGGAATACCATTGAATCTGTAGATT deletion Somatic Roche 454 pyro-sequencing 27535498 PD4107a 16 3948670 3948674 GCGGCTAAGGCGGGTGGATCACTTG AGGTC - AGGAGTTTGAGACCAGCCTGGCCAA deletion Somatic Roche 454 pyro-sequencing 27371719 PD4107a 16 47966931 47966968 CTCCAACACTTCTTGTCAGCTGCTG CTACCCTCACCCCTCAACACACACAGCTGCCCTCCCAT - CTTGGACCTGACACCCTGTGCTGAC deletion Somatic Roche 454 pyro-sequencing 27735393 PD4107a 4 47216283 47216283 CTCAATGTTTACCACGGGTGGTGGG A - CTCCCTTTGTTTACAGTGAACATGA deletion homo_sapiens_core_58_37c GABRB1 ENSG00000163288 CCDS3474.1 ENST00000295454 Somatic Capillary sequencing 27811824 PD4107a 4 136602177 136602192 TGATTGTTCATGATGTGGATGATCC AGGAAATCCAAGACCA - AGGAAACAACTGAAAGATATTGGTT deletion Somatic Capillary sequencing 27413535 PD4107a 8 82727352 82727353 TTTAGAGCTTTATTGACTATAAGAC AT - ATATGAATTTTTACTTTTTCACTGA deletion homo_sapiens_core_58_37c SNX16 ENSG00000104497 CCDS6234.1 ENST00000396330 Somatic Roche 454 pyro-sequencing 27713004 PD4107a 7 154435191 154435223 GTGAGTAATTTCTTTTTTTTTTTTT TTTTTTGAGACAGAGTCTCACTCTGTTGCCCAG - GCTGAAGTGCAGTGATACGATCTCA deletion homo_sapiens_core_58_37c DPP6 ENSG00000130226 ENST00000404039 Somatic Roche 454 pyro-sequencing 27387317 PD4107a 3 22505526 22505541 GAAGCATTTACTATGTCCCAGACAT TATTCTAGACATTTGG - TATTCACAAATGAATAAAACAAATA deletion Somatic Roche 454 pyro-sequencing 27647801 PD4107a 9 10118904 10118906 TAAATAAATAAATAAATAAATAATA ATA - AAGGAGATGAAGGAAGAGGGCATAT deletion homo_sapiens_core_58_37c PTPRD ENSG00000153707 CCDS43786.1 ENST00000381196 Somatic Capillary sequencing 27312794 PD4107a 9 80882499 80882502 CAGATTATGTGAATTGCCCAAAGTT GCAC - GGCTGTAAATAGGTGGTAGGGCTGG deletion homo_sapiens_core_58_37c CEP78 ENSG00000148019 ENST00000376598 Somatic Roche 454 pyro-sequencing 27703238 PD4107a 7 94217514 94217516 CAAGGAGAATTGTCCGCCATCTTGT TGT - CATTGGTCATGTTATAACAGCTTTT deletion homo_sapiens_core_58_37c SGCE ENSG00000127990 CCDS47642.1 ENST00000415788 Somatic Capillary sequencing 27708671 PD4107a 7 129348477 129348504 TCTAGATATAAGGTGACTTCATCTA TAAATAATAATGATTTTATCAGCTCGCC - TCTTATTTCTCTCTTATCTAATTGC deletion homo_sapiens_core_58_37c NRF1 ENSG00000106459 CCDS5813.2 ENST00000393232 Somatic Roche 454 pyro-sequencing 27648274 PD4107a 9 13007099 13007107 AGTACCTATGTGGAACTTACACACC AGAGGGCAA - GAAAGGCGATGAATAAATAAGTAAT deletion Somatic Capillary sequencing 27262072 PD4107a 21 20238479 20238479 TATATAGGAATGCTAGTATCTTTTT G - TTTTTGTTTTTGTTTTTGTTTTTTG deletion Somatic Capillary sequencing 27678352 PD4107a 18 74147425 74147444 TTCCTCTGATAACTCGGAAAGCACA TGAGGACACCCAGGGCCCTG - TGAACAATCACCGTCGTGTTCATGT deletion homo_sapiens_core_58_37c ZNF516 ENSG00000101493 ENST00000443185 Somatic Roche 454 pyro-sequencing 27769994 PD4107a 7 10853230 10853244 ATTTTTGATTCCTAAACTCTATTGC CTTGTTACAAATTAA - CTTGTCATGTATTATTGAAAGTTTT deletion Somatic Capillary sequencing 27812174 PD4107a 4 138869017 138869017 TATTCGGGTAATAAGCATGGTACCC A - ATAGGTCATTTTTTAATCCTCACCC deletion Somatic Capillary sequencing 28005378 PD4107a 10 26568832 26568848 CAGGGGCCTTGCCAGAAGCTACTAC AAAAGGACGCATCTGAG - AAATTTGGACATCAATTGATTAGAA deletion homo_sapiens_core_58_37c GAD2 ENSG00000136750 CCDS7149.1 ENST00000376261 Somatic Capillary sequencing 28020125 PD4107a 11 34830944 34830947 CTATTTATTCTGAGCTTGAGAAATA ATTT - ATTCTGAACAAGAGGATCAGCCACT deletion Somatic Roche 454 pyro-sequencing 28043375 PD4107a 11 130418462 130418476 AATGCCCACTCAGAAATCCATTCTA GCTGCAGGGGCAGAT - GCTGACTGCAGGGTGTGTCATCAGA deletion Somatic Roche 454 pyro-sequencing 27416486 PD4107a 8 104659501 104659513 ATGTTTGACAGTTTTTGCATCAGTG TTCATCAAGGACA - TTGCCTGAAGTTTTTTGTTGTTGTT deletion homo_sapiens_core_58_37c RIMS2 ENSG00000176406 ENST00000504942 Somatic Roche 454 pyro-sequencing 27359711 PD4107a X 126863205 126863205 CTTAGAGTTTGGCTTCCTTAGCATT A - AAAAAAATAGAGCTGCTAATGCATA deletion Somatic Capillary sequencing 27810352 PD4107a 4 127173628 127173628 GTAATGAAGACAATGCGGTATTGGC A - AAAGAATAGACAAATGTACCAAATA deletion Somatic Capillary sequencing 27469917 PD4107a 2 11677096 11677096 TACCATAGATATTTTCTTTTTTTTT A - TTTTTCTTTGAGATGGAGTTTCACT deletion homo_sapiens_core_58_37c GREB1 ENSG00000196208 CCDS42655.1 ENST00000381486 Somatic Capillary sequencing 27445392 PD4107a 1 76956525 76956525 CTGGGAATATGATGCATTTAGTTTC T - TTTTTTTCTTTTTTTCTTTTTTTTT deletion homo_sapiens_core_58_37c ST6GALNAC3 ENSG00000184005 CCDS672.1 ENST00000328299 Somatic Capillary sequencing 28043428 PD4107a 11 130862532 130862550 TCATGTTATAGCTAACTGAATTGAG AATTTTGAATTCACTAAAC - AATTATTTATTGTTGAGGCATTAGA deletion Somatic Roche 454 pyro-sequencing 27921998 PD4107a 12 74190147 74190147 ATAAGGTCATACATAGTTTTGTGCT A - TTTAATATAAACATTAGTTAACTAT deletion Somatic Capillary sequencing 27236552 PD4107a 13 47806851 47806853 CAGGCATATCCTCACAAGTCTTCTC AAG - AAGGTTTTCCAAGTTTGCAAGATGA deletion Somatic Roche 454 pyro-sequencing 27598516 PD4107a 3 146591942 146591943 CTTTTTGTATGTAATCTGCCTTTTT - T TGGCTTCCTTTAAGATTTTCTTTTT insertion Somatic Capillary sequencing 27647958 PD4107a 9 11123242 11123242 TCACCTTTGTTCCAGTTCCCAGCAA G - TTCCTCATTTCCATCTGAGACCACC deletion Somatic Capillary sequencing 27701541 PD4107a 7 82103025 82103033 AATGGATCCAAGATGGGGAAAAGTC TGATGTGCT - TGAGGAAATAAAAAAGACAGTGTGG deletion Somatic Roche 454 pyro-sequencing 27983656 PD4107a 20 6345980 6345980 TGCTTATCTTTTCTTTGTATGCATT A - AAAAAAGTCTTTATATGTCATGAAA deletion Somatic Capillary sequencing 27711533 PD4107a 7 146318170 146318170 CGATCTCAACTTTAGCCGAATTTTC T - TAGCAAATGCCGAGCTAGAGCGAAA deletion homo_sapiens_core_58_37c CNTNAP2 ENSG00000174469 CCDS5889.1 ENST00000361727 Somatic Capillary sequencing 27585716 PD4107a 3 159537215 159537215 TTTTCAAGGGAAGAATATCAAAGAA T - TTAGGGACGTATTTTAAAACCACCT deletion homo_sapiens_core_58_37c SCHIP1 ENSG00000151967 CCDS3186.1 ENST00000486290 Somatic Capillary sequencing 27927266 PD4107a 12 111416622 111416654 TCTTGCCTTCATCCTTAGAGATTCT CATGCTTCCTCCCAAATTCACATTGAAACTCTG - CATGATTGTTACTTGAGTATGAATG deletion Somatic Roche 454 pyro-sequencing 27730051 PD4107a 4 11850489 11850489 ATCCCCACCTACCCAAAGACAAAAA G - GAAGGAGTCCAAACTCAGACATTTG deletion Somatic Capillary sequencing 27656399 PD4107a 9 25055242 25055243 TGTCCTAAGTCCTCAAGAGCTAGAT - TC CTCTCTCTCTCATTCTTCCTTTCCC insertion Somatic Capillary sequencing 27385731 PD4107a 3 11296211 11296212 GTTTTTCTTACCTTGGTCTATGCAC AG - AGTTACCTGGTCGCCACAGTATCTG deletion homo_sapiens_core_58_37c HRH1 ENSG00000196639 CCDS2604.1 ENST00000397056 Somatic Capillary sequencing 27383225 PD4107a 16 84784983 84784984 TATAAATCATGCATATATTTCCCCC - C CTCCTTGGGGGAAATGGTTTCTCAG insertion homo_sapiens_core_58_37c USP10 ENSG00000103194 CCDS45537.1 ENST00000219473 Somatic Capillary sequencing 27678197 PD4107a 18 73081778 73081790 CTCCCCCTGCTCTCTGTCCCTATCC CCCTCAAACTTCT - CCAGACCCCAATCCTTTGATAGAAA deletion Somatic Capillary sequencing 27852756 PD4107a 1 216211434 216211434 AATTAGGAAACAGACAAAATGAATA T - TTTCCCTTCTAAATTGATGTGGATG deletion homo_sapiens_core_58_37c USH2A ENSG00000042781 CCDS31025.1 ENST00000307340 Somatic Capillary sequencing 27292563 PD4107a 15 60201204 60201204 TGGCTTTGCAAATGCTGTTTTTTTA T - TTGGTTGGTTTTGGTTTTTTGCCAC deletion Somatic Capillary sequencing 27588601 PD4107a 3 180420642 180420645 GGAGCCATCCAGCTGGGGTTTTTTG TTTA - TTTGTTTGTTTTTTTAGAGAAAGGG deletion homo_sapiens_core_58_37c CCDC39 ENSG00000145075 ENST00000273654 Somatic Roche 454 pyro-sequencing 27264592 PD4107a 21 33002268 33002278 GTCATTCTGGCTGCCCTAAAGGGAC TTTGCTAGCAT - CTCTGGCTTCCATGCCTACTCAATT deletion Somatic Roche 454 pyro-sequencing 27477167 PD4107a 2 60222673 60222696 AAGAGAGAGCAGAATGCAGAGTTTG ACACGTCACCTACCTGGAAAATGC - ACACTGATCTCACCTGTCAAGGGGA deletion Somatic Roche 454 pyro-sequencing 27513046 PD4107a 5 129099522 129099522 CTAGCAGTGCACCTGGAAGTCTGAA G - CTAGTTCATTGACCCCTGATGCTGA deletion Somatic Capillary sequencing 27851762 PD4107a 1 209816452 209816452 TATTTTAAGTAGCTCTGCCTGTCAA C - GAGCTAGCAGGACAGAAGCCTGAAA deletion homo_sapiens_core_58_37c LAMB3 ENSG00000196878 CCDS1487.1 ENST00000391911 Somatic Capillary sequencing 27392173 PD4107a 3 58674357 58674357 GAATGCCCTATTACATTCCTCTGAT C - TTTGCCCAGAGAGAAAGAGTCTATT deletion Somatic Capillary sequencing 27674800 PD4107a 18 54787497 54787525 CCAAATGATCCACCAGCCTTGGCCT CCCAAATTGTGGGGGTTACAGGCGTGAAC - CACTGCACCTAGCCATATATTTGTA deletion Somatic Roche 454 pyro-sequencing 27409421 PD4107a 8 50509548 50509577 AAGCCATGAAAAGTCACAGAGAAAC ATTAAGTCCATGTTACTAGTGAAAAAAACA - ATCTAAAAAGCTGCATACTATAGGA deletion Somatic Roche 454 pyro-sequencing 27651850 PD4107a 9 36414025 36414033 CTGTTACTGCTTTAAAGTCTGTTTC GTCTGATAT - AAGGATAGCGACTCCGGATAGCGAC deletion Somatic Roche 454 pyro-sequencing 27673343 PD4107a 18 45761080 45761085 TTGGACATATAGCCACTACTTTAAA CATCTT - CATTGCCTTTTTCAAATCTTCTGTT deletion Somatic Roche 454 pyro-sequencing 27239552 PD4107a 13 67586768 67586768 TACGTTGAATGGTTAGTGAGTCGCA T - TTTTTTCCATTTCATGAACAGAAGA deletion homo_sapiens_core_58_37c PCDH9 ENSG00000184226 CCDS9443.1 ENST00000456367 Somatic Capillary sequencing 27337816 PD4107a 17 34403356 34403378 ACCCAGTTTATGCCAGTTGTGCCAG CATAGTTATTAATAGTAACCCCT - TTGAGTCTTAAAGTGCTCATCCTAC deletion Somatic Roche 454 pyro-sequencing 27411855 PD4107a 8 69380911 69380911 ATGTAGCATGCTTATGAAATTACCA T - TTTTTTTAAACATAGTGCCAAGGTC deletion homo_sapiens_core_58_37c C8orf34 ENSG00000165084 CCDS6203.1 ENST00000337103 Somatic Capillary sequencing 27445760 PD4107a 1 79425665 79425679 TAAATGCCCAACACAAATATTTTGA ATAAGCTAAAAGTGT - ACGCCATTCAAAATAACATTTTGAA deletion homo_sapiens_core_58_37c ELTD1 ENSG00000162618 CCDS41352.1 ENST00000370742 Somatic Roche 454 pyro-sequencing 27474027 PD4107a 2 39853872 39853872 GGGAATGGAATTTATTAGGCAAAAA G - GGAAAAAGAAAACAACTCTCAGCAA deletion Somatic Capillary sequencing 27827120 PD4107a 4 89645924 89645925 ATATATTTTGAGTGAGTGTCAAGTG - A AAAAAAACAGTAAAAGGAAATTAAT insertion Somatic Capillary sequencing 27440072 PD4107a 1 40551672 40551700 AGTTGCAAGTTCATCGGCTGAGGGC AAAGACATGGGAAAACTGGACAATTGAGG - AAAAGCACTCTGAGATCCACTGAGG deletion homo_sapiens_core_58_37c PPT1 ENSG00000131238 CCDS447.1 ENST00000433473 Somatic Roche 454 pyro-sequencing 27464116 PD4107a 1 88647219 88647220 AAATGGAGATGTAAAAGAAATGTAT - T CAGTTACTCCGAGCAACATCTGTGC insertion Somatic Roche 454 pyro-sequencing 27449004 PD4107a 1 100090168 100090185 GCTACACTCCTCACTTTCCCATATC CATGTCCTAGAGTGCTGA - CATGCTCACAGTTCACTTTTCTGTC deletion Somatic Roche 454 pyro-sequencing 27617455 PD4107a 2 181916121 181916127 ATATCTTCTCATTTTTAATATTCTT CTTAGAA - CTCAGGTGTGCTTACTGAGTTGCAG deletion homo_sapiens_core_58_37c UBE2E3 ENSG00000170035 CCDS2282.1 ENST00000409247 Somatic Roche 454 pyro-sequencing 27938144 PD4107a 12 91683143 91683144 TCCAAAGTCACAAAACTCAGGAAAA - A CAAGTTAAAACAACAGAAACATATT insertion Somatic Capillary sequencing 27945819 PD4107a 6 12660230 12660257 GCACTCCTGCAATCCCAACTACTCG GGATGCTGAGGCAGGAGAATCACTTGAA - CCCAGGAGGCAGAGGTTGCAGTGAG deletion Somatic Roche 454 pyro-sequencing 27789115 PD4107a 12 10178214 10178214 TTGCTGCAATGGCAGGATTTCTTTC T - TTTTTAAGGCTAAATAATATTCCAT deletion Somatic Capillary sequencing 27769733 PD4107a 7 9301596 9301596 AATGAATAGGTTGGTAGTAAATTTT T - CTTAATTTTTCTTCTTTAGTTTTGA deletion Somatic Capillary sequencing 27726254 PD4107a 7 144960934 144960935 CAGCACTGAACCCTATATATACTAT - T TTTTTTTTCTATATATGCATATCTA insertion Somatic Capillary sequencing 27420508 PD4107a 8 133267935 133267935 TTATGCCCTGTCATGCACACAGAGA C - CTTTATCAATGACTGAAAGACTTAT deletion homo_sapiens_core_58_37c KCNQ3 ENSG00000184156 CCDS34943.1 ENST00000388996 Somatic Capillary sequencing 27269827 PD4107a 21 26334100 26334101 GAAACAGCAACTCATAGAGCCTTTT - AT GCATTACTTATTGAGACAGATACAG insertion Somatic Capillary sequencing 27740329 PD4107a 4 28674937 28674938 AGGTCCTGGAGGCAGAGCTCAGAAA - A ACCCATTTAATAATTCTCTGGGGCT insertion Somatic Capillary sequencing 27225212 PD4086a 4 34691344 34691345 TCATATTGAAAACAGAAAACCAATA - A AAAAAATCAATAAAACCAAAAGCAG insertion Somatic Capillary sequencing 26746531 PD4086a 15 75114447 75114480 GGGAGGCCAAGGCGGACAGATCACG AGGTCAAAAGACTGACACCATCGGGCAGATCACA - AGGTCAAAAGATCGAGACCATCCTG deletion homo_sapiens_core_58_37c LMAN1L ENSG00000140506 CCDS10270.1 ENST00000340915 Somatic Roche 454 pyro-sequencing 26401750 PD4086a 1 86852015 86852031 ATATTATATTTTCATTTATCTTAAA TAGCTTTATTTTACAAA - TTCTTAACAGATGAGGTTTTCATTT deletion homo_sapiens_core_58_37c ODF2L ENSG00000122417 CCDS30763.1 ENST00000370567 Somatic Capillary sequencing 27016096 PD4086a 11 21199338 21199338 CCTCACCAATACATGTTACCTTTCA T - TTTTTTTATAATCGTTCTAACAGGT deletion homo_sapiens_core_58_37c NELL1 ENSG00000165973 CCDS7855.1 ENST00000298925 Somatic Capillary sequencing 26413954 PD4086a 1 50805066 50805067 AGTTCCAGAAGTTTGCTTTGTTTTG - T TTTTTTTGTCAATTCTTTCAAATTT insertion Somatic Capillary sequencing 26888619 PD4086a 8 92017284 92017285 GGGAGAAGCCATGGCTATATTGATC - C AGATTGCTGCTTTGAAAAGCAGATA insertion homo_sapiens_core_58_37c TMEM55A ENSG00000155099 CCDS6252.1 ENST00000285419 Somatic Capillary sequencing 26984387 PD4086a 1 186747691 186747692 TTGGGACAACAATAGTACCCACCTC AT - AGAATTGTGATGGAGAATGCATGAG deletion Somatic Roche 454 pyro-sequencing 26652050 PD4086a 5 107048511 107048511 GGCTATGGCAGACAAGAAAAAAAAA C - CCCTCAGTAATAGTAAAATCTAGAA deletion Somatic Capillary sequencing 27061776 PD4086a 4 115625122 115625123 ACATTTCTTGGCCTTATCTCAAACT - A CCAAAGCATAATTTCTGGTAGTGAA insertion Somatic Capillary sequencing 27120005 PD4086a 9 95744463 95744466 TCTCTAGTATTCTCTGCTGTACTTT TTAC - TTCTGTGAGATCAACTTTTTTTAGC deletion homo_sapiens_core_58_37c FGD3 ENSG00000127084 CCDS43849.1 ENST00000337352 Somatic Roche 454 pyro-sequencing 26823039 PD4086a 19 23307987 23307988 TGGTATTGTAAGTCCATTAAATCTC TT - TTTCTTCCCAGTCTCTGGTGTGTTT deletion homo_sapiens_core_58_37c ZNF730 ENSG00000183850 ENST00000327867 Somatic Roche 454 pyro-sequencing 26401875 PD4086a 1 88053516 88053516 GTATCTTGGTCTAAATGCTAAATTT G - AAAATGAAACCATCCCAGCTTCTTT deletion Somatic Capillary sequencing 27084189 PD4086a 2 167398061 167398064 TAAAACTAATACCATCTTTATACAT AAAG - AAACAAGTCGATAAATGAAGCAGAA deletion Somatic Roche 454 pyro-sequencing 26983795 PD4086a 1 182042634 182042634 TTCCTTTCTCTCCTCTCTTCTTCTC T - TCTGTTTTCTCCATATGTTCTCTCT deletion Somatic Roche 454 pyro-sequencing 26795301 PD4086a 6 111999240 111999241 AATTCAAAAAAAGAAGTGACCACTC TG - TCATTTCTTACTGAATTAGCTTAAC deletion homo_sapiens_core_58_37c FYN ENSG00000010810 CCDS5095.1 ENST00000368682 Somatic Capillary sequencing 26885755 PD4086a 8 72446112 72446113 TGTTCTGTACCTCTGAGATAGCCAA - T ACCTTTCAAGACTGAAAATGCTTCA insertion Somatic Capillary sequencing 26505695 PD4086a 10 122511603 122511603 CATCACTCGGGTATTAAGCCGAGTA C - ACAGTTATTTTTCCTGATCTTCTCC deletion Somatic Roche 454 pyro-sequencing 26467517 PD4086a 3 134413467 134413478 CAGCCTAGGACAAGGAACAGGCTCA CAAGCCAGATGC - CAGGGGCTGCTGCTTCACTGCATTC deletion homo_sapiens_core_58_37c EPHB1 ENSG00000154928 ENST00000460895 Somatic Capillary sequencing 26378899 PD4086a 16 14709949 14709949 TACATTCACCATGGGGGAAAAAAAA C - AAAATTTATGTAAATAATTAAATTA deletion homo_sapiens_core_58_37c PARN ENSG00000140694 CCDS45419.1 ENST00000437198 Somatic Capillary sequencing 26917337 PD4086a 9 7370293 7370293 TTTTCCTTAGAAGCCAATGAAGACC T - TTCTGGGAGCAAGAATATGTAAGTA deletion Somatic Roche 454 pyro-sequencing 27050504 PD4086a 4 186552264 186552270 ACATAAGCAGAACTTAAGACACCAT TCATCTG - TCAACATAGACATGACGTTTAAATA deletion homo_sapiens_core_58_37c SORBS2 ENSG00000154556 CCDS3845.1 ENST00000431808 Somatic Roche 454 pyro-sequencing 26993543 PD4086a 1 239336193 239336214 AAATTATGTAAGTATTACATAACTT AAGTATTACATAATTTACATAA - TACGAAGTGGGAGAATCACCTGAGC deletion Somatic Roche 454 pyro-sequencing 27129215 PD4086a 9 79340280 79340281 ATATGGCTCTTGTCAGAGGTGCTTC - GAGGTGCTTCA CATTTTGGCTCAATGAAAGTGTCAG insertion homo_sapiens_core_58_37c PRUNE2 ENSG00000106772 CCDS47982.1 ENST00000376718 Somatic Capillary sequencing 26961156 PD4086a 11 105603514 105603514 TTCACAGCTTAGTTGCCAGGGAGGC T - GGGAAAACAGTATCTGGCACTTTCA deletion homo_sapiens_core_58_37c GRIA4 ENSG00000152578 CCDS41706.1 ENST00000393127 Somatic Roche 454 pyro-sequencing 27141035 PD4086a 17 56509698 56509698 GTAATAGGCACTGCAGAAGAAAAAC A - AAGAAGAATAAAGACTGAAGGAGGG deletion homo_sapiens_core_58_37c HSF5 ENSG00000176160 CCDS32690.1 ENST00000323777 Somatic Capillary sequencing 26804218 PD4086a 6 170700081 170700086 CACATCTGGCCCCTCACATCTCATT TGCATC - TGGTCTGTTTGCAGAGATCTCGGCT deletion homo_sapiens_core_58_37c FAM120B ENSG00000112584 CCDS5314.1 ENST00000476287 Somatic Roche 454 pyro-sequencing 26875677 PD4086a 8 103817514 103817514 TTCTACAGGCGCCTGGAGCACAGGG C - TTCCCAGAAGTCTGATTCAATGCTA deletion Somatic Capillary sequencing 26840229 PD4086a 13 37563742 37563745 TGAAATTATATAAAAATCAGAATAA AATT - AATTTGGATTAAAGAGAATTATATA deletion homo_sapiens_core_58_37c ALG5 ENSG00000120697 CCDS9361.1 ENST00000239891 Somatic Roche 454 pyro-sequencing 26941701 PD4086a 5 11178309 11178310 TGTCACCCATGATGACTCACACATT AA - GCAAGTCTTACTATGAAATCAAAGA deletion homo_sapiens_core_58_37c CTNND2 ENSG00000169862 CCDS3881.1 ENST00000304623 Somatic Roche 454 pyro-sequencing 26750133 PD4086a 15 98566738 98566778 CCAGTCTTAGGTATGTCTTAATTAG CAGCATGAGAATGGACTAATACACCCCATTTGAAGCTACCT - AGGGACTGTCTGCCACCAGTCATCT deletion Somatic Roche 454 pyro-sequencing 26907699 PD4086a 22 26579501 26579501 TTTGATCTTCCTTAACTTCAACAAG A - AAAAAAAATCTAGTTGATGTTCCTT deletion homo_sapiens_core_58_37c SEZ6L ENSG00000100095 CCDS13833.1 ENST00000248933 Somatic Capillary sequencing 26730487 PD4086a 16 86418129 86418131 GCTAACTATCTCCTCTATGCATTAA TCT - TCTCCACAGCACCCCCAATGGCGCT deletion Somatic Capillary sequencing 26474314 PD4086a 3 177037557 177037557 TGTTGAAGAAATGGGGTCACTCGGT G - CATCTCCTATATTCAAGAGTTGGTT deletion Somatic Capillary sequencing 27186725 PD4086a 10 33644243 33644250 GCTCACAGGGCTCTCATGATCCAAA CCCCATCT - CCCCATCTCCCTTTCCTGCCCTCCT deletion Somatic Roche 454 pyro-sequencing 26531701 PD4086a 17 15433840 15433840 TTCATAAGTACTGCTTTATGTAGTT G - TCTTTTAGGTCAGACAGGAAAAGAA deletion homo_sapiens_core_58_37c FAM18B2 ENSG00000175106 CCDS11170.1 ENST00000225576 Somatic Roche 454 pyro-sequencing 26771754 PD4086a 12 104903495 104903504 CTCATGAATGACATGAGACATTGGA ATTCATGGAT - AGGCATATGCTAGCAAGCCTGAGAT deletion homo_sapiens_core_58_37c CHST11 ENSG00000171310 CCDS9099.1 ENST00000303694 Somatic Roche 454 pyro-sequencing 26729369 PD4086a 16 79808006 79808007 TAATTTGTGCATTTTTCTAGGAAAT AG - AGTTTTGAGTGATGAATTGAAGAGA deletion Somatic Roche 454 pyro-sequencing 26386529 PD4086a 16 20689333 20689334 CCATAAAGGAAGAATACTAAAGGCT - AAATAAATAAATAAATAAAT AATAAATAAATAAATAAATAAATAA insertion homo_sapiens_core_58_37c ACSM1 ENSG00000166743 CCDS10587.1 ENST00000307493 Somatic Capillary sequencing 27197679 PD4086a 8 13940318 13940325 AAATTTTGTTATGTGACCTCCCCAT AGAGGGTA - AGCTTCTACCTGGTAATTAGAAGAA deletion Somatic Capillary sequencing 27218680 PD4086a 4 44532047 44532047 TGACTAACGCGTCCCAGGAACTTAA T - TTTTACTTTTAATTAATTTAAATAT deletion Somatic Capillary sequencing 26395432 PD4086a 1 43125958 43125960 GCTTTGGCAAGTAAGCTTTCAGCCC CTT - CTTCTTATTACTGTTCAGGTACCAG deletion homo_sapiens_core_58_37c PPIH ENSG00000171960 CCDS469.1 ENST00000304979 Somatic Roche 454 pyro-sequencing 26881982 PD4086a 8 143793503 143793518 ACTTCCAGAGTACAGGGTTTGTATT TATATTACTAGTTAAA - TATACTAAACTCTAAACCAAGAAAC deletion homo_sapiens_core_58_37c ENSG00000232495 ENSG00000232495 ENST00000426305 Somatic Roche 454 pyro-sequencing 26446454 PD4086a 7 20992943 20992943 CGTGTCTGAGACTTCTAGCCTAGCA T - TTTTTTTTCTTTCTCTCTTGTTTAT deletion Somatic Capillary sequencing 26746493 PD4086a 15 74899226 74899234 ACCCATTTGAGATACACTGATTTAG ACCAACTCA - ACCTTTATGAGGCCCAAAGCCAGCT deletion Somatic Roche 454 pyro-sequencing 54642109 PD4248a 11 46841274 46841275 ATTTGGGGCAGGTGCTATGCTCACA - A AAAAACTCTTCCTTCTAAGGAAGGA insertion homo_sapiens_core_58_37c CKAP5 ENSG00000175216 CCDS31477.1 ENST00000354558 Somatic Capillary sequencing 54221684 PD4248a 21 26546038 26546039 GGCATATGAAAATGACACAAGTAAA - A AAAAAAATGCTTTGTTTATATTTAA insertion Somatic Capillary sequencing 54788600 PD4248a X 33825912 33825913 TTCTAGCTCACTAATACTTTCTTCT - G TTGATCTATACTGCTCTTAAAGGAC insertion Somatic Roche 454 pyro-sequencing 54223877 PD4248a 21 41629425 41629426 CACACACACACACACACACACACAC - CACACACACACACA TGGCAAACGCACTCCCTGGCACTGC insertion homo_sapiens_core_58_37c DSCAM ENSG00000171587 CCDS42929.1 ENST00000400454 Somatic Capillary sequencing 54469639 PD4248a 8 36376923 36376923 ACAAGTGTTGAAATTTGCTGCCTCT G - GGGAATGAGAAAAGAGAATACCAGA deletion Somatic Capillary sequencing 54887247 PD4248a X 154285163 154285179 TAGCAGGTGGTTGTAAACTACCTTG AGTAGGTTGTAATAAAT - AGTCTGGCCTCAGACTGTATTCTGA deletion homo_sapiens_core_58_37c FUNDC2 ENSG00000165775 CCDS14763.1 ENST00000369498 c.? p.? Somatic Roche 454 pyro-sequencing 54371166 PD4248a 1 243955083 243955084 CCCCTGGGCGGCATAAAGAACAAAC TG - TGCTCCTGCAAGCTTCATTCAGTAG deletion homo_sapiens_core_58_37c AKT3 ENSG00000117020 CCDS31077.1 ENST00000366539 Somatic Capillary sequencing 54870256 PD4248a 7 51139273 51139274 ATTTGTTTTCCCCCACCACATACCT - T GTCCTCTATTTTTAATTGAGTTTGA insertion homo_sapiens_core_58_37c COBL ENSG00000106078 CCDS34637.1 ENST00000265136 Somatic Roche 454 pyro-sequencing 54363182 PD4248a 1 189783625 189783628 AAAACAGAGCATGCAAGAGAAATAG AGAA - AGAAAGAGAGAAAGCGAAGGGGAGA deletion Somatic Capillary sequencing 54178427 PD4248a 5 87082936 87082936 ACAAGACTTCCTAACAAATGTATAA T - TTTTTTTCCATGAATCTTTTAGAAT deletion Somatic Capillary sequencing 54457499 PD4248a 5 42579231 42579246 TAGATAGATAGATAGATAGATAGAT AGATAGATAGATGATA - GATAGATATAGATAGATAGATAGAT deletion homo_sapiens_core_58_37c GHR ENSG00000112964 CCDS3940.1 ENST00000230882 Somatic Roche 454 pyro-sequencing 54687839 PD4248a 2 37670156 37670156 GTGTAAAATAACATTCTTACAAGAG A - AAAAAGGTGTGGTGCATTGGATCTA deletion Somatic Capillary sequencing 54656373 PD4248a 11 76557483 76557484 AGATTGATTGATTGATTGATTGATT - ATAG TTCACCTATCTGACATCAAAGTCTG insertion Somatic Capillary sequencing 54900060 PD4248a 6 29872494 29872495 ACCCCTAGCCTATTCAGATTCAGCA CT - CTCTCTCGCTCTTTTTTTTCCCTCA deletion Somatic Capillary sequencing 54635197 PD4248a 11 48593469 48593483 TATCTATATGTCTGTCTATCTATCT ATCTATCTATCTATC - ATCTATCTATCTATCTATCTATCTA deletion Somatic Roche 454 pyro-sequencing 54211029 PD4248a 20 36318314 36318315 AGGGTTGCCAGATAAAATAAATAAT - T CCATTTAATTCTGAATTTCAGACAG insertion Somatic Roche 454 pyro-sequencing 54736677 PD4248a 1 31179799 31179801 CATTTGAAAGCCTCCTCAGGACAGC AGT - CTGCACTGGGGAAACACAGAGAGAA deletion Somatic Capillary sequencing 54368808 PD4248a 1 229280003 229280004 TGTCCTATGACCAGCTGGCAGAAGA GG - GGAAAAAATTAGGCCTGGTTCAAAA deletion Somatic Capillary sequencing 54890985 PD4248a X 102843522 102843523 TTCAACAGACCCATCTACCTATGTG - T TTTTTCCCCCTGGCTCTTGAGTAGC insertion Somatic Capillary sequencing 54366982 PD4248a 1 216815874 216815874 ACAGAGAAGGTGCTCTTCGCTATTG C - TTATATTATAACTTGGGAGTTTTGT deletion homo_sapiens_core_58_37c ESRRG ENSG00000196482 CCDS1517.1 ENST00000360012 Somatic Capillary sequencing 54364459 PD4248a 1 199283896 199283896 TCCCTACAATCTTTTAACTTTGTGG C - CCCCTTTTGTCTCTTTGAACATAGC deletion Somatic Capillary sequencing 54379291 PD4248a 1 192733226 192733227 AGAACATAACATTTTCAGAAAAAAA - A AGCCTAGGGAATCCACAAAGTTCAC insertion Somatic Capillary sequencing 54552205 PD4248a 12 30381832 30381833 AGAAAGCAACAGATACATGAAAAAA - A TGCTCAAAATCTCTAAAAGAAATGC insertion Somatic Capillary sequencing 54394630 PD4248a 2 158056291 158056291 GAGGTTCTTGCTAATGCAATAGAAT A - AAAAAGTAATAAGAGATATAGAGAT deletion Somatic Capillary sequencing 54451579 PD4248a 5 2949016 2949016 CCAGAATCCAACATGACAGAAATGT G - GGTTGAGCATTTTTGCAGAAATGGG deletion Somatic Capillary sequencing 54885715 PD4248a X 139502953 139502956 CTTTTAAAAAGCAATATATAAGCTA TATC - TAGCTTATATATTGCTTTTTAAAAG deletion Somatic Capillary sequencing 54598223 PD4248a 12 91838751 91838752 GCCAATGGCATTTCCCCCCAAAATA - A AAAAAAGTTAAAATGTATATAAAAC insertion Somatic Capillary sequencing 54307002 PD4248a 8 53244471 53244475 TTTTGGAGGAGAGAATGAAGGACTC CTCTT - CTCACATTCTGCCATCATCACAGAA deletion homo_sapiens_core_58_37c ST18 ENSG00000147488 CCDS6149.1 ENST00000276480 Somatic Capillary sequencing 54182446 PD4248a 5 122816198 122816198 CCCTTTGAGTCATTCAACTCTTTCC A - AAAAAATCACTATTCTAGTTCTTTT deletion Somatic Capillary sequencing 54633910 PD4248a 11 39956244 39956244 AAATTGCTCTGTGTTACTGCCCATA T - TTTTTTATTAGAAAATGCAGGTGTA deletion Somatic Capillary sequencing 54372928 PD4248a 1 244070420 244070437 TGACAGACATAGAGATAGAATTAAT ATAATAATCTTTCACGTG TTC AAGCTAACATCATTTTCTCTTTTTC complex Somatic Roche 454 pyro-sequencing 54906319 PD4248a 6 6359107 6359108 ATCTCCTCAGGCTCCTCTGGGGACA - T TTCTTAGACTTTCCTAGTTTTGATG insertion Somatic Roche 454 pyro-sequencing 54786204 PD4248a X 4618683 4618684 GACACTAAAAATTTCCAGAATGTGC - T TTTTTTTCAAGTGCACAGGGAAGTT insertion Somatic Capillary sequencing 54834432 PD4248a 10 80469091 80469093 AGGTGAAATGCATGTCTCACATGGC AGG - AGACAAGAGAAGAGAGCTTGCACAA deletion Somatic Capillary sequencing 54318389 PD4248a 8 121185866 121185885 AATCATCTGTTATCTATCATCCATC TATCATCTTTGTATTATCTG ATCTTTGTATTA TCTCTATCTATCTATCTATCTATCT complex Somatic Roche 454 pyro-sequencing 54360333 PD4248a 1 166568653 166568653 TTTAGTTCTGGGGAGTGTTTCTGGG T - TTTTTTTGTTTGTTTTTTATTTTAT deletion Somatic Capillary sequencing 54526771 PD4248a 16 70906306 70906347 CCATCCATCCATCCATCCATCCATC CATCCATCCATCATCCACCCACCCATCATCTACCCATCCATC ATCCACCCACCCATCATCTACCCATCCATCATCT ATCTATCCATCCATCCCTCTCATCC complex Somatic Roche 454 pyro-sequencing 54651088 PD4248a 11 116738283 116738283 AAATGCTCATTCTTTTGAAGGTGAT G - GATTATTAAAGGTCAAGTCTATCGA deletion homo_sapiens_core_58_37c SIK3 ENSG00000160584 CCDS8379.1 ENST00000292055 Somatic Capillary sequencing 54844295 PD4248a 10 56075831 56075832 TTTTGTCCAGTCAAGTTCTGATTAG - T TTTTTGCCTGCAAAAATACTTCATT insertion homo_sapiens_core_58_37c PCDH15 ENSG00000150275 CCDS44404.1 ENST00000361849 Somatic Capillary sequencing 54889448 PD4248a X 85910693 85910694 AGTCTGAGGAGAGAAGACAAAAAAA - A CACTGTATTTCAAATGCTTATGATT insertion homo_sapiens_core_58_37c DACH2 ENSG00000126733 CCDS48140.1 ENST00000373131 Somatic Capillary sequencing 54406848 PD4248a 2 201651940 201651963 TTAACACTTTCATATGAGGACTTCT CCTTAGAAACAGTGATTTCATTTA TAGAAACAGTGATTTCATTT AAAAAAATATATATTTAGGATTCAG complex Somatic Roche 454 pyro-sequencing 54552810 PD4248a 9 250767 250767 CATGACGGATTAGAAGGTCAACACT G - CCTGATGCAGCCGAAAGATCACATT deletion homo_sapiens_core_58_37c DOCK8 ENSG00000107099 ENST00000453981 Somatic Capillary sequencing 54883400 PD4248a X 114834823 114834826 AGGTGAAGTTTAGACTGTTCTCCAG AAAC - AAACAATCATGAAATGAGACTTGCA deletion homo_sapiens_core_58_37c PLS3 ENSG00000102024 CCDS14568.1 ENST00000355899 Somatic Capillary sequencing 54740033 PD4248a 1 60759176 60759179 AATAGAATGTCATGCCCAGGATTTC CAAA - CAGAGAGGGCTTTTGCAATTATGAG deletion Somatic Capillary sequencing 54464194 PD4248a 5 44146209 44146210 AAAATTCTCGATTGTAAAGCTACTC - T TTTTTTTCTTTGTAATTACTCAATA insertion Somatic Capillary sequencing 54310178 PD4248a 8 82379168 82379168 GCTTCACAGAGATCCCAGGCAAGAT A - AATGGGATAAATTGGGGAGCTGTTA deletion Somatic Capillary sequencing 54527564 PD4248a 16 53172186 53172187 ATTTTATACCATTAGTAAGAAAAAA - A GTTAAATAATTTGTAGTATTCTAAG insertion homo_sapiens_core_58_37c CHD9 ENSG00000177200 CCDS45485.1 ENST00000398510 Somatic Capillary sequencing 54606527 PD4248a 14 42072865 42072865 GTGCAAACTAATTGTTAACGCCATT A - AAAAAAACTAGATCATAACTTTTTT deletion Somatic Capillary sequencing 54796516 PD4248a 4 46679425 46679445 AATTAGAGCAAAAGCCAAAGTTCTT AAAAGAACCTACAAAGTTCTC - AAAAGAACCTACAAAGTTCTCAAAA deletion Somatic Roche 454 pyro-sequencing 54478832 PD4248a 22 34469156 34469156 GCCATCTGTTCTGCTTAAAACCCTC T - TGATGTGCTCACCATGGCCCAGGAG deletion Somatic Capillary sequencing 54597827 PD4248a 12 88431885 88431886 TTGTTAGGGGAAAAACATGAAAAAA - A AAAATCAACTTCAAATCTTGAGTAC insertion homo_sapiens_core_58_37c C12orf29 ENSG00000133641 CCDS31866.1 ENST00000356891 Somatic Capillary sequencing 54878744 PD4248a X 63416485 63416485 AGGGAGACAGATATGAGGGGATTTT A - AAAAGGTGTGTATATCTATACAAAC deletion homo_sapiens_core_58_37c FAM123B ENSG00000184675 CCDS14377.2 ENST00000330258 Somatic Capillary sequencing 54579230 PD4248a 12 40182734 40182734 CCTCCTTAGAGTTCTTTTCTAATAC G - TATTTAAAAATCTACTGTGTGTGTG deletion homo_sapiens_core_58_37c SLC2A13 ENSG00000151229 CCDS8736.2 ENST00000280871 Somatic Capillary sequencing 54453541 PD4248a 5 16470879 16470892 CTTAACTGTAGAGTCAGGAGGGTTA AACAGGATCCTGTT - TTCTATGTCTTAGACCAAGAGTTTG deletion Somatic Roche 454 pyro-sequencing 54370326 PD4248a 1 238784956 238784995 CTACACAACACTGATAACACAAATA TTATCATTTGTGTTTTTTCAAGGCACTATGCCTGTAGTAG - TTTGTTATAGCAGCAATGGGAAATT deletion Somatic Roche 454 pyro-sequencing 54304886 PD4248a 17 69396433 69396434 ATCCCCATTTCTTTGATGTATAAAT - T TTTTTATATTATCCAAGAATAGTTA insertion Somatic Capillary sequencing 54506736 PD4248a 3 70272345 70272345 GGGTGCTAACATGTGAAAGTGACAC T - TTTTGTCTAAGTTTTCCCTTATTGT deletion Somatic Capillary sequencing 54299752 PD4248a 17 46592270 46592276 AACTGGAACCTTCAACTGCAAGATC AGTCACG TT TTCAAACAATATCTTTCCAAACATG complex Somatic Roche 454 pyro-sequencing 54582340 PD4248a 12 64105335 64105335 GTTTGTGTAAATACACTCTATGATG T - TTTCACAATGACAAAATCTCCAAAC deletion Somatic Capillary sequencing 54738685 PD4248a 1 47304913 47304914 GCAGCTGATTTATTAGTTCTCTCTC TT - TGCATTACTTTTTAGTGGTTGCTTT deletion Somatic Capillary sequencing 54179590 PD4248a 5 99255102 99255102 ATTGGTCTGATCAGTAGAACGTTAG T - TTTTTAACAAAAAGTGTCAGTAATG deletion Somatic Capillary sequencing 54596045 PD4248a 12 72773751 72773752 TTATAAATATGCTTTGTAAATACCC - A TACATAAAAACCCCTAAGCACATAC insertion homo_sapiens_core_58_37c TRHDE ENSG00000072657 CCDS9004.1 ENST00000261180 Somatic Capillary sequencing 54796481 PD4248a 4 46310218 46310220 TTTTGGATTAATGAATAGAATATCC CTA - GACTTTCATTCAGAAATTCTAAAAT deletion homo_sapiens_core_58_37c GABRA2 ENSG00000151834 CCDS3471.1 ENST00000356504 Somatic Capillary sequencing 54502669 PD4248a 3 37637101 37637101 GGTAACAGTGGAGTTTGACTCAGAT C - CCCTTGACCTCACTTGGCTTTTCCT deletion homo_sapiens_core_58_37c ITGA9 ENSG00000144668 CCDS2669.1 ENST00000264741 Somatic Capillary sequencing 54312969 PD4248a 8 104755600 104755603 GACTCCAGAATTATTGCCGGATAAA TTTG - TTTATCTGCAGTTTCTATTCCATTG deletion homo_sapiens_core_58_37c RIMS2 ENSG00000176406 ENST00000504942 Somatic Capillary sequencing 54380656 PD4248a 1 203391484 203391485 CCCACTGGTCTAAAGAAGCCTCGTT - A TCCTGCCAGCCCTCCTCAAAGGCAA insertion Somatic Capillary sequencing 54208545 PD4248a 20 53955928 53955928 AATACAGTGTAAGTATTATTATTTA T - TTTTTTTATTTTTGTTTTTATTTTT deletion Somatic Capillary sequencing 54834993 PD4248a 10 85588629 85588631 TCCACCCTCCCAGTCATTCTCTATC CTT - CTACCGTGATTTAATTTCCTTTATG deletion Somatic Capillary sequencing 54311549 PD4248a 8 94555138 94555138 TCTAGTCATATTTTTTCCAGCGTTA C - ACAATTAGATTATAAGCGTCTCAAA deletion homo_sapiens_core_58_37c AC011118.2 ENSG00000246662 ENST00000501400 Somatic Capillary sequencing 54723141 PD4248a 7 77674019 77674020 CCGTGTGTGTGTGTGTGTGTGTGTG - GTGTGTGC TGCACGTGTGCACACGCAGTTGGCT insertion homo_sapiens_core_58_37c MAGI2 ENSG00000187391 CCDS5594.1 ENST00000354212 Somatic Roche 454 pyro-sequencing 54489462 PD4248a 10 23711001 23711028 AATTTATGTCTCTCTCACTTAAAAG TTCATGTGAGAACTTTTAAGTAGGCCAC - TTCATGTGGTCATCTGCAGACTTGG deletion homo_sapiens_core_58_37c ENSG00000224148 ENSG00000224148 ENST00000451785 Somatic Roche 454 pyro-sequencing 54781620 PD4248a X 10056301 10056302 GGTGCAAAAGTAAAGACTGTGAGTC TG - TGCACTGAATTTTGATTTCATACTG deletion homo_sapiens_core_58_37c WWC3 ENSG00000047644 CCDS14136.1 ENST00000380861 Somatic Capillary sequencing 54491432 PD4248a 10 36339140 36339140 AGTATTACTTTTATTTATTTAATGC A - AAAAAAACCTACCCATCAGTTCCTC deletion Somatic Capillary sequencing 54362381 PD4248a 1 182931357 182931358 AAAGAACATAGATAAATTAGTAGTA AC - ACAGTTTTAGGAAGTCTTTAATACT deletion Somatic Capillary sequencing 54371711 PD4248a 1 247203089 247203089 TGTCTCATTGGCAGGTGCAGGGAAT A - AACTGTGCTGTAAGAAATGAGGTCA deletion homo_sapiens_core_58_37c ZNF670 ENSG00000135747 CCDS31087.1 ENST00000366503 Somatic Capillary sequencing 54216905 PD4248a 21 31726777 31726794 TTTTCTTTCTTTCTTTTCTTTCTTT CTTTTTCTTTCTTTCTTC - CTTTTTCTTTCTTTTCTTTCCTTTC deletion homo_sapiens_core_58_37c KRTAP13-2 ENSG00000182816 ENST00000448917 Somatic Roche 454 pyro-sequencing 54380499 PD4248a 1 202417077 202417078 TCTGGAGAAGTAGCATGTGTTTTTT - T GATATTACATGTATCTTTTAAAATA insertion homo_sapiens_core_58_37c PPP1R12B ENSG00000077157 CCDS30973.1 ENST00000367270 Somatic Capillary sequencing 54333193 PD4248a 6 96034245 96034248 TATATTGGAAAATACTGTTGATAAC ACTT - ACTAATTATCTTTTTTCAATAAATT deletion homo_sapiens_core_58_37c MANEA ENSG00000172469 CCDS5032.1 ENST00000358812 Somatic Capillary sequencing 54451216 PD4248a 5 696982 696985 AGCTGTGTATGTTCAGCTGTGTGTG TGTC - TATTTGTGTGTCTCTGTGTGTATGA deletion Somatic Capillary sequencing 54796479 PD4248a 4 46307984 46307985 AAAGGTGAAGAGCAAATTTCTTGTT AG - AGTCTGTTAGAATCACTGGGCCCTT deletion homo_sapiens_core_58_37c GABRA2 ENSG00000151834 CCDS3471.1 ENST00000356504 Somatic Capillary sequencing 54313158 PD4248a 8 106461314 106461317 GAAACAAGCACCTTAAAAGTCACAT CTTA - CTTACATCAACTTTCAGTATGCTAA deletion homo_sapiens_core_58_37c ZFPM2 ENSG00000169946 CCDS47908.1 ENST00000407775 Somatic Capillary sequencing 54331482 PD4248a 6 81617744 81617747 GAGAATGTGTGGACTCTAAATCAAG TTTC - TTTATTTTACCCAAGAGATGCTACT deletion Somatic Capillary sequencing 54856099 PD4248a 7 9210225 9210227 ATCTTATTGTACTGTGTTTTGAAAA GTT - GTTGTTGTAGTTATTTTTTATTGGT deletion Somatic Capillary sequencing 54183154 PD4248a 5 128248947 128248947 ATACAGAAGTAAATATTTAGATGCT A - AAAAAACAGGCAAGAAAATAAGTGC deletion homo_sapiens_core_58_37c SLC27A6 ENSG00000113396 ENST00000508645 Somatic Capillary sequencing 54305394 PD4248a 17 73361984 73361985 CTCCCTTCTATTGAAATTGCCCATT - T TACCTGTAGAAATACCATTTTTCAC insertion homo_sapiens_core_58_37c GRB2 ENSG00000177885 CCDS11721.1 ENST00000392562 Somatic Roche 454 pyro-sequencing 54894611 PD4248a X 146184368 146184369 TGAACCCAGCAATCCCATCACAGTG - GT TATACCCAAATAAATATTATTATAA insertion Somatic Roche 454 pyro-sequencing 54258987 PD4248a 4 143047420 143047422 AAAGCAGGAACTGAAATGATATGAT CTC - CTCATCATAAAAGTGCAAGCATCAT deletion homo_sapiens_core_58_37c INPP4B ENSG00000109452 CCDS47112.1 ENST00000513000 Somatic Capillary sequencing 54654987 PD4248a 11 63167052 63167053 AATACTACTAGAACTAAAGAGATAG - C CCCAGTACAAAAATAGTTGAGAATT insertion homo_sapiens_core_58_37c SLC22A9 ENSG00000149742 CCDS8043.1 ENST00000279178 Somatic Capillary sequencing 54670684 PD4248a 9 116656767 116656769 TCTTGGTAAAGGGAATCCAAGGCAA CTT - CTTGAGGGAAGTGTCATTTGCACTT deletion homo_sapiens_core_58_37c ZNF618 ENSG00000157657 CCDS48008.1 ENST00000288466 Somatic Capillary sequencing 54782450 PD4248a X 21951074 21951074 ATATAAATAACTCATAGTACTTTAC A - AATGCCGTGGTCTATCCTAGGTATT deletion Somatic Capillary sequencing 54628887 PD4248a 11 5991176 5991178 ATAAAGACAGTGAGACTAGTTGCGT AGA - AGAAGAGAGGGTAGAATTCTAAGAC deletion Somatic Capillary sequencing 54264662 PD4248a 4 181775034 181775034 GATCTAATTAGATTTTGATTAGTTA T - TTTTTTTCTCTTGCTTATTTTCAAG deletion Somatic Capillary sequencing 54391693 PD4248a 2 135861352 135861352 TTTGCCAAGCAAAAGGAACAGATTC T - GTTGGGAACAGATGGGTAAAACCTG deletion homo_sapiens_core_58_37c RAB3GAP1 ENSG00000115839 CCDS33294.1 ENST00000264158 Somatic Capillary sequencing 54379906 PD4248a 1 197480671 197480672 CCACTAGAACTAGATAAATGAAAGG - A AAATACTAGAATTTTAATAATAGAA insertion homo_sapiens_core_58_37c DENND1B ENSG00000213047 CCDS44289.1 ENST00000450419 Somatic Capillary sequencing 54354634 PD4248a 6 158745108 158745109 AATAGTGGAAACTTACCTAGTTTTT - T CCCTGGAAAGGAATTTAAACCGATA insertion homo_sapiens_core_58_37c TULP4 ENSG00000130338 CCDS34561.1 ENST00000367097 Somatic Capillary sequencing 54742460 PD4248a 1 78143170 78143185 ATATGTCATACACCCCCATTAAACC TTTATAAAAAATGTTA - AATGTTGATGAGTATAGGGTAACAA deletion homo_sapiens_core_58_37c ZZZ3 ENSG00000036549 CCDS677.1 ENST00000370801 Somatic Roche 454 pyro-sequencing 54174320 PD4248a 5 55346724 55346738 GAGTGTCTCAGAAAGAGTTGCAGCT ATTGTTTGCAAAGTA - AGGAGGAAGCAAAGCAATAATATTA deletion Somatic Roche 454 pyro-sequencing 54830529 PD4248a 10 53979358 53979360 TGCCTCAAGTAAACTGTTGGAAAGA AGG - AGATGTAGTTGGGAAGAAATTAAAT deletion homo_sapiens_core_58_37c PRKG1 ENSG00000185532 CCDS7244.1 ENST00000373980 Somatic Capillary sequencing 54704827 PD4248a 2 82320833 82320834 AAAAGTAGTCTAATATGTGGATATT - T GCAATATAACATTTATGTTTGTACA insertion Somatic Roche 454 pyro-sequencing 54810279 PD4248a 3 145686735 145686735 AACAAAAATAGTAATACCTGCTGAT A - AAAAAAATCGTATATTGGTTCTTTG deletion Somatic Capillary sequencing 54217000 PD4248a 21 32475003 32475004 AAGAAGATCCACGAATATGTGGATT CA - CACAGTTCAAACTTGTGTTGTTCAA deletion homo_sapiens_core_58_37c TIAM1 ENSG00000156299 ENST00000461148 Somatic Capillary sequencing 54333500 PD4248a 6 98670290 98670291 CAAAAACTCAAGGAGGAAATCCTCC CT - AACTCATTAAGTGAAGCCAGTATTA deletion Somatic Capillary sequencing 54624703 PD4248a 14 81405221 81405222 TGTGCCATATATGGTCCACTTAATC - A AAAATGTTAAGTGTGAATCAAATTC insertion homo_sapiens_core_58_37c C14orf145 ENSG00000100629 CCDS32130.1 ENST00000281129 Somatic Capillary sequencing 54571740 PD4248a 18 58484431 58484471 ATTTTTTAGTTTCTTTTCATTGTGA ATGTGAAAAATATATTTTATATAATTTCAATATTTTTAACA TTGAAAAATATATTTTATATAATTTCAATATTTTTAACAT TTTTAAGTCATTTTATAGCCCAACA complex Somatic Roche 454 pyro-sequencing 54816098 PD4248a 3 191412642 191412645 GACTTTTTGTAGTTGCTATATTACT TTAA - TTAATTATTTCCTCATTTATTCTTC deletion Somatic Capillary sequencing 54236522 PD4248a 15 37988439 37988479 CCTTTTATGTTGACACTAAGAAGGA TGACTACCATGCCTCCACCTAGAGTTTCTTACTGCACGGTG AC AGAAACAGACCCTCCTAAGCTAGGC complex Somatic Roche 454 pyro-sequencing 54621040 PD4248a 14 52180233 52180234 TTTGTTCAGAAATTACTGAAAAAAA - A CATGAGGAAAGGAAGATAAGGATTT insertion homo_sapiens_core_58_37c FRMD6 ENSG00000139926 CCDS9704.1 ENST00000356218 Somatic Capillary sequencing 53275166 PD4085a 12 62241020 62241023 TCTCTGCGAATAGATAAGAGTTTAT TAAA - TACTCACTGTGTTCACAATTTTATT deletion homo_sapiens_core_58_37c FAM19A2 ENSG00000198673 CCDS8962.1 ENST00000358343 Somatic Capillary sequencing 53065221 PD4085a 8 60738931 60738932 ACGTTGTGCACATGTACCCTAAAAC TT - AAAGTATAATTTTTTTTAAAAAAAG deletion Somatic Capillary sequencing 53008630 PD4085a 2 97147220 97147221 TTTTCTCTTTCTTTTTTCTTTTTCT - T TTTTCCTTTGCTGGGGGGACCTTCT insertion Somatic Capillary sequencing 52858691 PD4085a 5 88143023 88143023 TGAATACATCTACTGACTAGAGAGT A - GCAGTCATATTTATGTAGAGTAAAA deletion homo_sapiens_core_58_37c MEF2C ENSG00000081189 CCDS47244.1 ENST00000424173 Somatic Capillary sequencing 53354173 PD4085a 11 97896116 97896117 ACTGTGAGTGTCTTCAAAATTTCCA AC - AGTTCTGTTTTACCCTTTTTTTCCC deletion Somatic Capillary sequencing 53320640 PD4085a 1 84793082 84793083 TCAGAACAGGAAAATCAATCAGTGG - A AAAAAACAATCAGAACAGGGGTTGC insertion homo_sapiens_core_58_37c SAMD13 ENSG00000203943 CCDS30760.1 ENST00000370673 Somatic Capillary sequencing 53043859 PD4085a 14 48949418 48949421 GTCTTCGAGTATACACAACTGGACA TTCT - TTCTAGTATATTTATAATTTTTGTT deletion Somatic Capillary sequencing 52864007 PD4085a 5 128144717 128144717 AATCTCTTAGCATTTTGATCATAGC T - TTTTTTAAAAAATAAATGTTATCTG deletion homo_sapiens_core_58_37c SLC27A6 ENSG00000113396 ENST00000508645 Somatic Capillary sequencing 53377626 PD4085a 10 8111433 8111434 TCACCCTCTCCTCTCTCCCCACTCT CA - GTCTGCAGCCAGGAGAGCAGGGACG deletion homo_sapiens_core_58_37c GATA3 ENSG00000107485 CCDS31143.1 ENST00000379328 c.925-3_925-2delca p.? Somatic Capillary sequencing 53163258 PD4085a 1 232106628 232106631 CCAGTGACTGAGAAAAGAGGGTTCC TCTT - TCTTTAAGTTGGCAGAAAGACATTC deletion homo_sapiens_core_58_37c DISC1 ENSG00000162946 ENST00000439617 Somatic Capillary sequencing 53153388 PD4085a 1 160582213 160582213 CTCTTCCCACCTTAAAAAAAAAAAA C - TTCCTCATTTTCCCCTCCTTCATGT deletion homo_sapiens_core_58_37c SLAMF1 ENSG00000117090 CCDS1207.1 ENST00000302035 Somatic Capillary sequencing 53326921 PD4085a 10 56473896 56473899 ACAACTTCACAGTTATACAGGACTT AGAA - AGAACAATGTCAGACAGACTAAAGT deletion homo_sapiens_core_58_37c PCDH15 ENSG00000150275 CCDS44404.1 ENST00000361849 Somatic Capillary sequencing 52920917 PD4085a 3 147318321 147318321 TTTCAAATAGAGCCTTGCAAACAAG A - AAAAAATCCTAACTTTACCTGAGGA deletion Somatic Capillary sequencing 52729039 PD4085a 11 34676794 34676795 TGTTTACTGAGGTCTTATTAAATCC CT - CTCTCCATCCTGCCATGACGTTTCG deletion homo_sapiens_core_58_37c EHF ENSG00000135373 CCDS7894.1 ENST00000257831 Somatic Capillary sequencing 53019898 PD4085a 2 195663508 195663509 GTTGACTTTCAACTCCAGAAAAAAA - A TCTTTTTCTTTTTAAATTGTATCCT insertion Somatic Capillary sequencing 52713944 PD4085a 21 16461930 16461930 TTTATTATTTTTCTTTTACTCCTTT A - AAAAAATTTCAATACAGTGTCATGG deletion Somatic Capillary sequencing 52947639 PD4085a 19 29941613 29941614 TGTATATTAGTTACATAGGCCCCCC - C AATTCAGGTCTGAGAGCGCTCTGTG insertion Somatic Capillary sequencing 52964012 PD4085a 6 70114564 70114564 GATATGAAAACCACCCCACAGAAAT A - AAATGATAGAAATTATCTACAGAGA deletion Somatic Capillary sequencing 52894883 PD4085a 7 115845129 115845129 AAAATAGTCATACTAATCATGGAAT A - TTTTTAAAAGGAGGAAAGAAATCCC deletion Somatic Capillary sequencing 53281146 PD4085a 12 109059310 109059312 ACTTCTATCAGACTGAAAATCAAAG ACA - ACAAATCCAAGTGGTGTGATACAGA deletion homo_sapiens_core_58_37c CORO1C ENSG00000110880 CCDS9120.1 ENST00000261401 Somatic Capillary sequencing 52683682 PD4085a 3 12941973 12941974 CAGTATATATATATATATATTTATA - TA TTTATATATTTATATAAAGTTTACT insertion homo_sapiens_core_58_37c IQSEC1 ENSG00000144711 CCDS33703.1 ENST00000273221 Somatic Capillary sequencing 53160777 PD4085a 1 213440246 213440265 GGGCAACAATATTGAGGCTCCGTCT CAAACAAACAAACAAACAAA - CAAACAAACAAACAAACAAACAAAA deletion homo_sapiens_core_58_37c RPS6KC1 ENSG00000136643 CCDS1513.1 ENST00000366960 Somatic Capillary sequencing 52868546 PD4085a 5 163904903 163904905 GCACCTTCATGTTTACGTGGAAATT ATC - ATCTTTTTTAGTGTGATTAACATAC deletion homo_sapiens_core_58_37c AC008446.1 ENSG00000241956 ENST00000486913 Somatic Capillary sequencing 52693985 PD4085a 16 54101706 54101708 TCTTTGCTGGTTTATTTGTATGCTA AAT - AATTCACCAAAGGTTCTTGTTTACT deletion homo_sapiens_core_58_37c FTO ENSG00000140718 CCDS32448.1 ENST00000471389 Somatic Capillary sequencing 52955786 PD4085a 9 31471431 31471431 GATGAGATAGTGAGATTTTTTTTTT A - AAAAAAAGCATATTTGGACAGCATT deletion Somatic Capillary sequencing 53244176 PD4085a 20 30039372 30039386 TGTAATAGAGTTCTCACAAGATCTG GTTGTTTAAAAGTAT - GTGGCACTGTCTCGCTCTTCACTTC deletion Somatic Capillary sequencing 53208097 PD4085a 16 11450798 11450798 AAACAAGGGCACAGAATGGAGCAAA G - GAACAAAATGGGGCCATGAGAAACT deletion Somatic Capillary sequencing 53247797 PD4085a 20 58754440 58754440 AAATTTGAGCACAATCTTGGCAGAA C - CCTTGAACTTCTTATCATTTCCACA deletion Somatic Capillary sequencing 52919939 PD4085a 3 139446312 139446313 TAATGATGACAATGATAGTACCTAT CA - CACAGAGTTGTTGCAATGAACCATA deletion Somatic Capillary sequencing 53116337 PD4085a 2 35135728 35135729 AACAGACAATGATTTGGGAAAAAAA - A AGGGCATAAAAAGTTCACTGTTTTC insertion Somatic Capillary sequencing 53160918 PD4085a 1 214501375 214501375 TAGAGATTTACAGAGAAAGAAGACA T - TTACTACCAAAATGACCACAGTCAA deletion homo_sapiens_core_58_37c SMYD2 ENSG00000143499 CCDS31022.1 ENST00000366957 Somatic Capillary sequencing 52740474 PD4085a 7 20480389 20480413 CCTTATGCACTTTAAGCTGTTTTTT TTTTCTTTTCTTTTCTTTTCTTTTC - TTTTCTTTTCTTTTCTTTTCTTTTC deletion Somatic Capillary sequencing 52860819 PD4085a 5 105110222 105110224 AAGTGAGAAAAGGGGTGTGAGCATT AAC - AACTAAATGGTGAACAATAGAGGCA deletion Somatic Capillary sequencing 53042673 PD4085a 14 40323558 40323559 TACGTCCCAACATGAATTAGTCACT GA - GAGAATGGTGTATGCGTGGTACAAT deletion Somatic Capillary sequencing 53065608 PD4085a 8 64436651 64436651 AGGAAACTGACACGCAGAGAAATTG C - TCAAGTTCAAGTCAATTAGTGGTAG deletion Somatic Capillary sequencing 53253190 PD4085a 6 2965046 2965048 TGTATACTACTATTTTTGACCTAAT AAC - TTTATCATGTTTTATTTTATGTATG deletion homo_sapiens_core_58_37c SERPINB6 ENSG00000124570 CCDS4479.1 ENST00000335686 Somatic Capillary sequencing 52849708 PD4085a 17 17898345 17898345 TTGTGGAACACCTGAATGGCTCCTT C - CTGTTTGACAGCATGTACGCTGAGG deletion homo_sapiens_core_58_37c LRRC48 ENSG00000171962 CCDS45622.1 ENST00000448396 c.744delC p.L249fs*37 Somatic Capillary sequencing 52835514 PD4085a 9 122591202 122591202 GATAGTTATTTTTCATGGGGGGGGG T - TGTGAGAGACCCTTTGATGCTTTTG deletion Somatic Capillary sequencing 53160736 PD4085a 1 213142181 213142181 GGGAACACAAGCCCAGGCCCTTCAT G - GGGTAGACAAGCTAACTTCAGACTC deletion homo_sapiens_core_58_37c VASH2 ENSG00000143494 CCDS1511.1 ENST00000366965 Somatic Capillary sequencing 52880622 PD4085a 5 123908869 123908870 CAGCAGGGAGGCCAATGGCGGGGGG - GG ACCACTGCCCCTCAGGGGGAGTGTC insertion Somatic Capillary sequencing 53030339 PD4085a 5 29919184 29919187 GGTAACCCTAACTGCTATTACTGAC TGTT - TGGTGACCACTATTTCTGGCTACTT deletion Somatic Capillary sequencing 52738002 PD4085a 7 4283671 4283674 CCAAAGTAAATTACCTTTGAGATAG AGAA - AGAAAGGCCCTTGAGCCTTCACTGG deletion homo_sapiens_core_58_37c SDK1 ENSG00000146555 CCDS34590.1 ENST00000404826 Somatic Capillary sequencing 52749669 PD4085a 7 24920537 24920538 TTTATTATATTTTAATTTAAAAAAA - A CTTTCAGTGACATGTCACAGAGCCC insertion homo_sapiens_core_58_37c OSBPL3 ENSG00000070882 CCDS5390.1 ENST00000313367 Somatic Capillary sequencing 53066607 PD4085a 8 73531967 73531968 TCTAAATCTTATCATCCACAAAAAA AG - AGTTTCTCAATATTTCACAGTGTAC deletion homo_sapiens_core_58_37c KCNB2 ENSG00000182674 CCDS6209.1 ENST00000329185 Somatic Capillary sequencing 53192775 PD4085a 13 104172193 104172193 CTATTGGAATACATTAATGGGAGGG A - AAAAAAATCTATCCTTTTAAAAATG deletion Somatic Capillary sequencing 53060920 PD4085a 14 85413955 85413956 TCTCAAAAAATAAGATAAAATAAAA - A AAAAATAAATAAAAATAAAAATAAC insertion Somatic Capillary sequencing 52738831 PD4085a 7 9491951 9491951 TTTTCCAACTCTTTTTGCCTTGATT C - CAAATCTTGAAAGGACCAGTTTAAA deletion Somatic Capillary sequencing 52685729 PD4085a 3 31924161 31924162 AATGTGAGCAGAAGTGTGCACACAC - CA ACACACACACACACACGCACTGGAA insertion homo_sapiens_core_58_37c OSBPL10 ENSG00000144645 CCDS2651.1 ENST00000396556 Somatic Capillary sequencing 53354985 PD4085a 11 103076004 103076007 TAAAAAATCATAGCAAGTATTTAAC AATT - AAAGAATTTTTAAATCCTTAAAAAA deletion homo_sapiens_core_58_37c DYNC2H1 ENSG00000187240 CCDS44717.1 ENST00000398093 Somatic Capillary sequencing 52923536 PD4085a 3 165535370 165535370 CCCAAATACTTTAGTCTTAGAGGTT G - TTCTCTCTTCTGGGAAAATTTTTCC deletion homo_sapiens_core_58_37c BCHE ENSG00000114200 CCDS3198.1 ENST00000264381 Somatic Capillary sequencing 53250146 PD4085a 20 41742794 41742795 AGATTATGTTCAGTGAGCCACTCTG - T TCTCTAAGATCTAACATGAGATAAG insertion homo_sapiens_core_58_37c PTPRT ENSG00000196090 CCDS42874.1 ENST00000373187 Somatic Capillary sequencing 52848859 PD4085a 17 11984671 11984672 AAAAATTGCTTCCCAATATTTTAAC AG - AGAGAGACTGAGAACACACAGCATT deletion homo_sapiens_core_58_37c MAP2K4 ENSG00000065559 CCDS11162.1 ENST00000353533 c.219-2_219-1delag p.? Somatic Capillary sequencing 53384308 PD4085a 10 9716771 9716772 CCCTTTACATTTTCTCAGCATTTTT - T CTATCATTTTAAGCAAAAACTATTA insertion Somatic Capillary sequencing 53382237 PD4085a 10 37528624 37528626 AGTAAGAGAAAAACTCATAGACCAA TAT - TATTTGTAATTTTTTCTCAGGTTTA deletion Somatic Capillary sequencing 52714640 PD4085a 21 20997289 20997292 TGAGTGGTATATGGAAAACTTAGAG AAAC - AAACATCCTCATAAGCGAAGGTGGA deletion Somatic Capillary sequencing 52868109 PD4085a 5 160986943 160986946 CTCTGTAAGATAAAGTCTTTTGCAG GAAA - GAAAGTCCAACAACCAATTCCACTG deletion Somatic Capillary sequencing 28868021 PD3890a 5 5331126 5331127 CTTCAACACGTTATATCTTGGCTGC - GGCTGCA ATTGCCTGTGGGTCTGTCCTCTGCA insertion Somatic Capillary sequencing 28488697 PD3890a 8 127044991 127044992 GAAAAAATAAGGATGGGCTTTCAAA - A TTTCACAGTCTGGGTGTAGGCAAAA insertion Somatic Capillary sequencing 28499546 PD3890a 1 200200595 200200595 ACCTTTTATCCCTCCAAAAGCATCC A - AAACCCTTGAAAGTTACAAGGCACA deletion Somatic Capillary sequencing 28521829 PD3890a 4 64502207 64502210 TTTTACTTATTTTTACTGATAAATC AATA - AATAGAGACAAAAATATATTATTTG deletion Somatic Capillary sequencing 28669357 PD3890a 12 118750682 118750685 AACAAAACTATAATGAGTGTTGAAA GACT TGA GTGGAGAAAAAAATAAATTTGGGGA complex Somatic Capillary sequencing 28851291 PD3890a 11 134772793 134772816 TAAGAAATAGGGTCAGTTCCACCAG CATGCCCGGGACCTTGGCTGTTGT - CATTTACTTGTTCCTTGTTGTCAGA deletion Somatic Capillary sequencing 28907781 PD3890a 2 73611869 73611895 ACCATGAAGACTTTTTGCTGGACTC CACTTTAATTATGGCTATTTCCTTTGG - TAACAGTGAAGCATCTCAAGATTAT deletion Somatic Capillary sequencing 28782356 PD3890a 10 61903283 61903310 AAAAATGTTACCAAGATCACATATT TTCACTTACTAAAAAGGAGCTGTGTAGG - TTTATGTTTTCTAAAGTTATTTGGT deletion homo_sapiens_core_58_37c ANK3 ENSG00000151150 CCDS7258.1 ENST00000280772 Somatic Capillary sequencing 28662378 PD3890a 12 77530640 77530640 CTGAAGGTGGCCCATTTGGATACCA T - TTTTTTTTATTATACTTTAAGTTTT deletion Somatic Capillary sequencing 28394880 PD3890a 11 21207393 21207399 AGCACCTTATCTGGCCTTTGATGAG TATTTCT - TATCTATTAGGAAAGAGGCATCTGC deletion homo_sapiens_core_58_37c NELL1 ENSG00000165973 CCDS7855.1 ENST00000298925 Somatic Capillary sequencing 28475900 PD3890a 8 109254139 109254154 CCTTGTAATAATTCCTTTTCATTAT ATATCTGCAAAAGAAG - ATAACTTTCTAATGAATATATTTAA deletion homo_sapiens_core_58_37c EIF3E ENSG00000104408 CCDS6308.1 ENST00000220849 c.91-12_94del16 p.? Somatic Capillary sequencing 28500351 PD3890a 1 205181423 205181450 GTAAGCTGAACTTCAGTGGGTTCCT GAAGTAGGGAGACCGGACTGGGTAAGGG - GAAGTTGAGGTTTGTAGCCTTCCAA deletion Somatic Capillary sequencing 28414874 PD3890a 9 27899463 27899496 ATGTTGCATGTTTCACAGTTTCCTA TATGGAATGATTTCTTTATTAGCCTATAGAATAT - TGAGAGGCAAAACAACTTTAAAAAT deletion Somatic Capillary sequencing 28956822 PD3890a 3 79723926 79723927 ATTTCATTCTGAAATTGTAAAAAAA - A ACACTTTTACCTAACTTTGTATCTG insertion homo_sapiens_core_58_37c ROBO1 ENSG00000169855 ENST00000464233 Somatic Capillary sequencing 28491873 PD3890a 1 145730566 145730578 GTTAAATGAATGCACATAGTGTCTA GCACATCTTAAGT - GCTATTGAGATAATCTTCAGACAGC deletion homo_sapiens_core_58_37c PDZK1 ENSG00000174827 CCDS924.1 ENST00000417171 Somatic Capillary sequencing 28424719 PD3890a 10 19367597 19367622 TTGTGCTGGAGCATTTGTTTGTGGA AAGATTTTTGATTACTGATTTACTCT - CTTGTTACAATCTATTTGGATTTTT deletion homo_sapiens_core_58_37c ENSG00000234778 ENSG00000234778 ENST00000455529 Somatic Capillary sequencing 28599737 PD3890a 18 71666632 71666633 TTAGTTTCTTGCTTTTTATTTTTTT - T TATCTGTTGTATGTTTTTTCAGTTT insertion Somatic Capillary sequencing 28966177 PD3890a 3 160112959 160112980 AAAACCCTAATAAATAATATTTTTA TAAGATCACCATTCTCCACACT - TGAATCCCCTTCTTATTAAAACTCT deletion homo_sapiens_core_58_37c IFT80 ENSG00000068885 CCDS3188.1 ENST00000326448 Somatic Capillary sequencing 28494819 PD3890a 1 168090348 168090358 AGCTTCTCACCCATTGTTAGAGATG AGAAGATCCTT - AGAAAACATCTAGTCTAACCTCCTA deletion homo_sapiens_core_58_37c GPR161 ENSG00000143147 CCDS1268.1 ENST00000367838 Somatic Capillary sequencing 28521188 PD3890a 4 60792089 60792089 AAGCTCAGACTGTGAAGACTGCAAT A - AAAACTTCACATTTAAATGCCCAGA deletion Somatic Capillary sequencing 28539681 PD3890a 4 187510837 187510853 CATTAAAAAAATACTGATTAATGCA ACTTAAAAAAATTTTGC - ATTTCTATTTTTTATAGAGACAGGG deletion homo_sapiens_core_58_37c FAT1 ENSG00000083857 CCDS47177.1 ENST00000441802 Somatic Capillary sequencing 28533699 PD3890a 4 148561608 148561624 TGAGTTCTCTAGAGTTCAGTTCCCA GCCCTCTCTATCTACAT - GCCCCCAAGCTATTTCATCCAGTCT deletion homo_sapiens_core_58_37c PRMT10 ENSG00000164169 CCDS3771.1 ENST00000322396 Somatic Capillary sequencing 28536426 PD3890a 4 167099256 167099266 TGGAAGCAAATTATGGTTTAAAGAA AAATACGTCCT - CTTGGAGCTGTCAGCCACCTCTCCA deletion Somatic Capillary sequencing 28529236 PD3890a 4 116386420 116386452 TCCAAGTCTTTGCTATTGTGAATAG TGCCACAATAAACGTACGTGTGCATGTGTCTTT - ATAGTAGCATGATTTATATAAATCA deletion Somatic Capillary sequencing 28394304 PD3890a 11 16789169 16789169 TCCCAAATAAATGTTCTGCCTGCAA G - CCCTGGCCTCAGGCTCTGTTTTCTG deletion Somatic Capillary sequencing 29011194 PD3890a 17 68748580 68748592 TGTTATTCATTTGTATACATCCCAG AACCTGAACCTTA - AAGTTAAGAATAACAATTTTGTCAA deletion Somatic Capillary sequencing 29044039 PD3890a 15 24016714 24016715 TCCCGTCTATTCCTGTTTTTTTGAG - T TTTTTATTTGAATGGATAATAATTA insertion Somatic Capillary sequencing 28920316 PD3890a 6 7270272 7270272 GCTGCAGGGCTGTTCTTGCCAAAAA G - GCAGAATCTGAATCTAATCCAGAGG deletion homo_sapiens_core_58_37c SSR1 ENSG00000124783 ENST00000474597 Somatic Capillary sequencing 28380101 PD3890a 6 167679087 167679096 AACAATGACAATATTTATCACATAA ACCCTTTTCT - ACTTGTTGTCTTATCAATGTCTCTA deletion Somatic Capillary sequencing 28643370 PD3890a 19 29444025 29444025 TTTGTTGTGTAAGCCACAGTAATTT A - TTATTTATGATTACCATTATTTATT deletion Somatic Capillary sequencing 28488862 PD3890a 8 128640287 128640288 ATTCCCCTCATACCTATGAGCCAGA - A TGTGTCATATGTCCATACATAAAGT insertion Somatic Capillary sequencing 28475520 PD3890a 8 106393961 106393994 GTTTTTGCATATATATATGAATATT TTCCCCAAAGATAGCCTCTGGAAAGCAGCAAAAG - TTTGAGCTAGAGAACAACTGAAGCT deletion homo_sapiens_core_58_37c ZFPM2 ENSG00000169946 CCDS47908.1 ENST00000407775 Somatic Capillary sequencing 28902699 PD3890a 2 30215626 30215641 GCACCTGACGCAGACTAGCTTTGAA GATAGTAAAAACAGGT - GATAAGAGAACAAACACAAACTCTG deletion Somatic Capillary sequencing 28920227 PD3890a 6 6737990 6738015 AGAAAGAGGTCCCTCGGAGGAATGT TCCCCTGCAGTGAACGGAGCACCAGA - TCCCCTGTCCCTAATCACTGTGTGT deletion Somatic Capillary sequencing 28502254 PD3890a 1 220095991 220096004 TGAGGAGCAAGATTCTCATCTGTGA AATGGGGTAGTAAT - AATATCTGCCTCACCTCCCTCAGAG deletion homo_sapiens_core_58_37c SLC30A10 ENSG00000196660 CCDS31026.1 ENST00000366926 Somatic Capillary sequencing 28706619 PD3890a 21 41890811 41890811 GTGCTTAATGCAAACCTAGATGGCA T - AACCTACTACACACCTAGGCTTTAC deletion homo_sapiens_core_58_37c DSCAM ENSG00000171587 CCDS42929.1 ENST00000400454 Somatic 28903598 PD3890a 2 37765671 37765686 TTTCTCTGGTGGTTTTGCTTTTTAT AAGTGGAACTTGTTCC - AAAGCTGGTTTTCCGTGGAGATCAT deletion Somatic Capillary sequencing 28477097 PD3890a 8 119364125 119364133 TTCTTGTTGGTTTTCCAGTTCACAG TTCTCATTC - TTCTGGAATCCTTGCTGGCTCTTTG deletion homo_sapiens_core_58_37c SAMD12 ENSG00000177570 CCDS47913.1 ENST00000409003 Somatic Capillary sequencing 28921130 PD3890a 6 11588662 11588680 GTTCTGAGCCTTAGTCTACGTCCAG ATTCATTTGAAACTTGTTT - AACTTGGAGGATTTTTTGCAAGGTG deletion Somatic 28964282 PD3890a 3 144585479 144585498 AGACTAAGACCTAAAATTAGTACAG AGAAGTAGGGTGTTGCTATA - AGGATATCCAAAAATGCGGAAGTAG deletion Somatic Capillary sequencing 28474821 PD3890a 8 101433418 101433426 CCAGACACACAGAACAGGAGGTACA GAGCTCTGC - GGAAGGGTCATGCTTGGCAAATCCC deletion Somatic Capillary sequencing 28694179 PD3890a 7 54751840 54751873 AGATTCCCATGAAAGCACTTTTCTT CCCACAGCAGGTTAGAGATATGCCCTATTTCTAA - TACTTTGATCACCATATCCACCTTG deletion Somatic Capillary sequencing 29007641 PD3890a 17 43440632 43440637 TAAACCTCTTTTTCTTTATAAATTA CCCAGT - CTTGGATATGTCTTTATTAGCAGCG deletion Somatic Capillary sequencing 28878411 PD3890a 13 59052388 59052403 TTTTTGATGGAATAGTGTAACATCA GTGATATGGTTTGGCT - GTTTTCTCACCCAAATCTCACATCA deletion Somatic Capillary sequencing 28696232 PD3890a 7 7065895 7065896 TTGCTCATGCTTTTGGGGTCATATC - A AAAAAATGATTTCCCAGGCCAACGT insertion Somatic Capillary sequencing 28652001 PD3890a 20 7692458 7692478 TCAGGTAGGAGTGACCTGCACAGCT AATAGTCAAGTGTTCTTGTAA - AATCAATCACTGAGGCTATTTTGAC deletion Somatic Capillary sequencing 28501624 PD3890a 1 214756317 214756325 GACCACACAGATGCCTGCTTCATTC ATAAAATGG - ATTTCTGTAATCTACCCCAATACCT deletion Somatic Capillary sequencing 28939461 PD3890a 3 20300020 20300020 TTAACAAGCCAAGGGAACATGGGCC G - TGAATAGTCAAGTATAAGGAATTCC deletion Somatic 28421714 PD3890a 10 1020454 1020460 CCTCGGTTTCCTTATCTATAAATTG GGAATGT - GAAAGGCTCTCTTGAAGCCTTGCTC deletion homo_sapiens_core_58_37c ENSG00000205740 ENSG00000205740 ENST00000381466 Somatic Capillary sequencing 28436594 PD3890a 20 60825476 60825500 TGTGACCTCTGGGTGTCCCTTTGGT TGTTGACCGGAAAGCCCTCCCCAGG - TGGGTCTTCAGTCTTGGTTGGACCA deletion homo_sapiens_core_58_37c OSBPL2 ENSG00000130703 CCDS13495.1 ENST00000313733 Somatic Capillary sequencing 28861917 PD3890a 5 11908752 11908764 ATTTCTCCTACATGCAGGTAATTAT ATCATGCAGACTA - ATCATGAGAATTTACAGGGATCTCC deletion Somatic Capillary sequencing 28849041 PD3890a 11 115438371 115438380 ATCAGCCCCCTTCAGAGATGACTTC TCAGTCTCTA - TGAGGACTTGTGTGTGTTAAAGGGC deletion Somatic Capillary sequencing 28966326 PD3890a 3 161274553 161274591 AATTAGAAAGCAGAGCCATGGGCAA AGGCTATTTTTATGACCTTTCAGCAGTGCGATGTCTGTG - TTGCCCACTATGTCAAGGCCCAAGC deletion Somatic Capillary sequencing 28506943 PD3890a 1 144989405 144989424 CATTGACTCTATCTGGTCAAGGACG ACAACATTTTATTTCTCCTG GT ACCCTTTTGCTATCAGATCTGGCCT complex Somatic Capillary sequencing 28652398 PD3890a 20 10828529 10828529 CTTCTATGTCTCTCTTTCCAAAAAA G - TTAATGTGAGGATAGTGACATTGTC deletion Somatic 28946435 PD3890a 3 75891649 75891653 TCTTTGGAAATAAACCCATGTTAAA TTATC - TTAGTTTGGGTGTGTTCTCTTTTTC deletion Somatic Capillary sequencing 28536176 PD3890a 4 165325231 165325243 AGCTAGTTTTGTCATTAACAATCTG TTTATATTGAGTA - TTTATATCAGGTAGTCATAGTTTCT deletion Somatic Capillary sequencing 28768683 PD3890a 2 136176030 136176031 TTTAATGCATTTAGAGGTTTTTTTT - T AAATCTAGGGCTTAATTAGCTTTAG insertion homo_sapiens_core_58_37c ZRANB3 ENSG00000121988 CCDS46419.1 ENST00000264159 Somatic Capillary sequencing 28654025 PD3890a 20 24266530 24266573 ACCCCTTTCTCTCTCTCTTATTTCA TTCCTTTAAAAACAGAAAGTAATGATAGGACTTGTTGCTGATTC - TTGAGTATGAGCTTATTCAGTTAAT deletion Somatic Capillary sequencing 28872222 PD3890a 5 39880850 39880851 ATTCCTGGTAAGTCAGAATTTTTTT - T ATTGATAAAGAGTTTTCTCTTTTCC insertion Somatic Capillary sequencing 28507536 PD3890a 1 231898653 231898663 TTTGTTATCATCATCACTGTCATTC TTATTTTAAAA ACTGTC ATGAAGAAGGTAAGGTTCAGAGAGA complex Somatic 28492947 PD3890a 1 153836563 153836586 AGAGTTTTGAACAGAGATCCTTCAC AATGCTCTGAAAAGCATGATCTCA - AATTTGTACACACACACATACTTGA deletion homo_sapiens_core_58_37c GATAD2B ENSG00000143614 CCDS1054.1 ENST00000368655 Somatic Capillary sequencing 28969968 PD3890a 3 188154510 188154517 TAATTAGGTGTATAGTGGTAGGCCC AGACTTGA - ATTTCAGTATGAATTTTGAAAAAGA deletion homo_sapiens_core_58_37c LPP ENSG00000145012 CCDS3291.1 ENST00000312675 Somatic Capillary sequencing 28990448 PD3890a 7 124300996 124300996 CTTACTCGCTGCAGGATTTGATATA T - TCAGCAAACAAGTGTCTACAATTTT deletion Somatic 28506458 PD3890a 1 247365825 247365841 TCTTTGGAGACAGCATGTGTGATGG TAGTTCTCCAAACTGGC - TATTTGTTTCTAATTGAAAGCCTGG deletion Somatic Capillary sequencing 28504129 PD3890a 1 233470553 233470560 CATTGCTTTATGACTGTACTATCAT AGATTGTC - AGAATGGCAATAATAAAAACTAAAA deletion homo_sapiens_core_58_37c ENSG00000143674 ENSG00000143674 CCDS1598.1 ENST00000366624 Somatic Capillary sequencing 28530255 PD3890a 4 123190783 123190802 TTAATTTCAGTATTGTCTGGGTTTT TTGTTTGTTTTTGTAGCAGA - TTGTTCATTCTGCTGATTGTTGTAT deletion homo_sapiens_core_58_37c KIAA1109 ENSG00000138688 CCDS43267.1 ENST00000264501 Somatic 28479440 PD3890a 8 135955534 135955540 CAGAGCTCAAGCCCAGTTTTTGTCA CTAACAC - CCCCATTTGCTCCAAGTGCAGCAAG deletion Somatic Capillary sequencing 28683120 PD3890a 22 35059126 35059172 ATTGTAAAGAGATGTGTAAGGTTGC CGCCCGTGTAACATGGCATACTGTTTTACAGTTAAAAAAGCAAACAT AACATGGCATACTGTTTTACAGTTAAAAAAGCAAAC GTTTTTAGAAATAGAAGGAGTACAC complex Somatic Capillary sequencing 28433619 PD3890a 20 36474966 36474986 GCTGCTTGCACAGGGCCTGGCACAC AGAAGGTGGTCAGAGAAGCTT - TAGCTTTCTTTTCTCTACAAGGACT deletion homo_sapiens_core_58_37c CTNNBL1 ENSG00000132792 CCDS13298.1 ENST00000361383 Somatic Capillary sequencing 28946805 PD3890a 3 78233167 78233179 AAATATAGCTTCTCCAGAGAAACAG CTATATGCTCTCC - CTAAATAGTTCCATTTGGCTTGCAC deletion Somatic Capillary sequencing 28480778 PD3890a 8 48866122 48866138 TAAGAGTTCAAAGAAATAATCAGGC ATTGCTGGTTAGACTTA TG CAGTTTTTGAATAAAGAAAATCAAG complex Somatic Capillary sequencing 28788979 PD3890a 10 113202721 113202742 GATAATAGGAGAGGAAGAGAGTAAG ACTGTTATTGATGTGCAGCTTT - GGAAGATCATACCCATATTTGACAG deletion Somatic Capillary sequencing 28860473 PD3890a 5 2654393 2654393 ACAATGCTATGGCAACTCCCAGCCT A - AAACCTCAGTGGATTTAAACAACCG deletion Somatic Capillary sequencing 28500779 PD3890a 1 208859935 208859939 GAACCAATTCCTGGTGTTTACCTTC TGTTA - TGTCCCTTTTTTGAGTGGAAGTGTT deletion Somatic Capillary sequencing 28396694 PD3890a 11 33744564 33744576 TATTGAGCAACTTTGTAAGTTTCCA TTACGTGAATGCC - TAGATGTGTAGTGATAGCATCAGGT deletion homo_sapiens_core_58_37c CD59 ENSG00000085063 CCDS7886.1 ENST00000351554 Somatic Capillary sequencing 28664446 PD3890a 12 95694480 95694505 AAGATTCATATGAAGTGATATTAGA TTGTTCCTTTTACAAAAGTGTTTAGC - TTCAAGACTGGAAAGGGAATATGAG deletion homo_sapiens_core_58_37c VEZT ENSG00000028203 CCDS44954.1 ENST00000436874 c.? p.? Somatic Capillary sequencing 28562700 PD3890a 1 38517574 38517585 GAAAACTTGGAAAGGGAAAGTGTGG CTTGATTTCCCT - CCCTGGCCGGCCATCTGGGGTGGGT deletion Somatic Capillary sequencing 28939573 PD3890a 3 21083699 21083709 GTCTCACTCTTGTCACCCAGGCTGG AGTGCAATGGC - AGATCTCGGCTCACTGCAACCTCGG deletion Somatic Capillary sequencing 28903928 PD3890a 2 40454629 40454632 GAACCGAAAACCAAATACGACGTGT TCTG - ACTTACAAGTGGGAGCTAAATGATG deletion homo_sapiens_core_58_37c SLC8A1 ENSG00000183023 CCDS1806.1 ENST00000378715 Somatic 28533613 PD3890a 4 147824821 147824856 GAAGTGGTTCCTTACCCACTTGTCT TCAGAATTATTGAAGTAACAGGCCAGAGCATACAAG - TTATTATGTACATCTTCGAAGGATT deletion homo_sapiens_core_58_37c TTC29 ENSG00000137473 CCDS47141.1 ENST00000325106 c.426_461del36 p.N142_E154>K Somatic 28411337 PD3890a 9 612226 612228 TGTAGAGAAAATACACAAAGCCAGG TGT - TGTGGCTCTTGGGTAAGACTGAGAA deletion homo_sapiens_core_58_37c KANK1 ENSG00000107104 CCDS34976.1 ENST00000382303 Somatic 28536366 PD3890a 4 166578585 166578597 TCCCACTATGCCAATTTGTCCATTC ACCCATGGATTTG - ACATGTTCACAGGAATTTCTGCCTA deletion Somatic Capillary sequencing 28971583 PD3890a 3 143544023 143544045 TAAAAAATTTCTTTTCAGTCCTTTG TTTATCCTCCCCAAGAGTGTCCT A AGTGTTAACTGTACATATTTATCTC complex Somatic Capillary sequencing 28611704 PD3890a 14 47878945 47878978 ACGTTCATATTATTTTGATTTTTTT TAAGAAAGAAAACCTCATGAATACGGTATAATCA AAGAAGGAAAACCTCATGAATATGGTTTCTG TCAGCAGAAAGACAGTCAATTTGTA complex Somatic Capillary sequencing 28531287 PD3890a 4 130875602 130875612 TTGTCTCTACACATGTTGAAGTTCA TCTCTCACCCC - TCTCTACTCTCTTACTTATGCTTCA deletion Somatic Capillary sequencing 28478335 PD3890a 8 127823155 127823160 ACTTCTTAGTCTGCAGAACTATGAG AAATAA - ATGTCTATTGTTTATAGGCCATCCA deletion Somatic Capillary sequencing 28470989 PD3890a 8 72771956 72771958 TAAAGATTAGAAGTCTTAAGTTTTC ACA - ACAATTTCTTGCCAGAGGAGTGCAA deletion homo_sapiens_core_58_37c AC016057.1 ENSG00000235531 ENST00000457356 Somatic Capillary sequencing 28662246 PD3890a 12 76665910 76665912 CTCCATCCCCCAGTGGGAACAGACC CCA - CCCCTGTTCTGACTCTTGCTCTCCC deletion Somatic Capillary sequencing 28629547 PD3890a X 80282431 80282431 GGGTGATTTCTGCATTTCCATCTGA G - GTACCGGGTTCATCTCACTAGGAAG deletion Somatic Capillary sequencing 28375408 PD3890a 6 130816512 130816531 ACATACATATCAAATGACATTGGCA CCATTTGCTGAAAAACTATC - TTTTCCCCATTGAGTTACCTTGGCA deletion Somatic Capillary sequencing 28846070 PD3890a 11 94358365 94358366 CTTTACCTTTTAATAAAAATAAGTC TA - TTTTTAATCTTAAGCACTTTGTCAA deletion Somatic Capillary sequencing 28651107 PD3890a 20 1027587 1027587 TGAACAAGCATTTGTTAAACATCTG T - TATACTGTGGGCCAAGCACTGGTCT deletion Somatic Capillary sequencing 28523252 PD3890a 4 73497299 73497338 TGCTACTCCTCTGGCATCCACCCCA CTCAGCCTCTGGCAAGGCTCCAGTTCTTGATCCTGGCTGC - CTCTTTGCTTGTGGATTGAACCTGA deletion Somatic Capillary sequencing 28630627 PD3890a X 90316659 90316685 ATTCCTGTCCATAATACCCACCAGA AGCAATTTGCCTTCAGCTGGCAAGGCC - AGCAATATATCTTTACTATCCTACT deletion Somatic Capillary sequencing 28535940 PD3890a 4 163651089 163651092 TATGATCTTGATGTTTATTGCATCA TTAT - TTATCATTTTCTTAATTTTATTTTT deletion Somatic Capillary sequencing 28654029 PD3890a 20 24282777 24282777 CATGTTAGAAATCAGTTTTGGTTGG T - TTTGTCCTTTTCTCTTTGTTTTTGT deletion Somatic Capillary sequencing 28940671 PD3890a 3 29478047 29478084 AACTCAACTTTTTCTTTTGTTGTTT AAAAAATCTAAACTCTATTTTGAAAAGCAAGGTCTTTG - AAAATGTGAAACATTGTAGACTTTA deletion homo_sapiens_core_58_37c RBMS3 ENSG00000144642 CCDS33725.1 ENST00000383766 Somatic Capillary sequencing 28861486 PD3890a 5 8985777 8985787 CCACTGAAAAAGTTATGAAATTACT GTCTTGACAAC - GGTTATCATTTTAGTATACATCCAT deletion Somatic Capillary sequencing 29012574 PD3890a 17 77732388 77732395 TTCTCAAGCCTTCCAAATACCTGGT CTTAGCGC - CTTTAATATACAACGAATGCTTACA deletion Somatic Capillary sequencing 28443637 PD3890a 5 76984426 76984437 ATTACACAGATATAAGGGTTTAAAT AAAAACTTAAAA - ACAAGATGCTGAATTGATTACAGCT deletion Somatic Capillary sequencing 28727847 PD3890a X 7411229 7411229 TTTGTTATACGTGAACTCAAGTCAT G - GGGGTTTGCTGTACAGATTATTTCA deletion Somatic Capillary sequencing 28989562 PD3890a 7 115115007 115115031 AATATCTACCTATGTATACACACTT GTATATGACACGTTATAAGTATAAA - GTAGTAGCATATCATTATTTGATTT deletion Somatic Capillary sequencing 29042318 PD3890a 15 97391688 97391698 ACACTGTTTTGGTTTCATAAACTTT TAGGAGTCAAA - TGGGTTACTAAATTGGTGTGCAGAT deletion Somatic Capillary sequencing 28980561 PD3890a 3 180418322 180418323 TGTTCTCTAGTTCACATAGTTTTTT - T CAAAATTTACATTTTCAGTGAAATA insertion homo_sapiens_core_58_37c CCDC39 ENSG00000145075 ENST00000273654 Somatic Capillary sequencing 28426749 PD3890a 10 32962437 32962437 AATAAGTGTATTGCTAGTATTTTTT C - CTTTTTGATGTGATTGTAAGTAGGA deletion homo_sapiens_core_58_37c C10orf68 ENSG00000150076 CCDS31177.1 ENST00000302316 Somatic Capillary sequencing 28592048 PD3890a 18 65983162 65983168 ATAGTACCATCACACCAGAAAGGAC CCTTGGG - CCTCTTTGCAGTCAATCCCAGAAGC deletion Somatic Capillary sequencing 28789142 PD3890a 10 114708652 114708654 CTCCTAAGAGGCAATTTGCTAAATC CTA - CTGATTTATTTTTTTCTTTTTTCTC deletion Somatic Capillary sequencing 28924176 PD3890a 6 30248618 30248618 TCATATCATCTGCAAACTAGGGTAA T - TTAACTTCTCCCTTTCCAGTTTGGA deletion Somatic Capillary sequencing 28473290 PD3890a 8 89273093 89273109 CCATTGACCACCAGACTTCAATCTA TAAATACTTTAGAGAAG - TAAATTGTTTCCATTGGATAAGCAT deletion homo_sapiens_core_58_37c MMP16 ENSG00000156103 CCDS6246.1 ENST00000286614 Somatic Capillary sequencing 28845740 PD3890a 11 91454007 91454021 TTGTCACATTTTTCAGAACAATCAT TCATGGCAATTACAA - TCTTCATTAACAGAAACATTTACTT deletion Somatic Capillary sequencing 28629826 PD3890a X 83023281 83023281 CTGCAAACACGGACAGTTTGACTCC T - TTTTTTTATCTGGATGCCCTTTATT deletion Somatic Capillary sequencing 28884157 PD3890a 13 101275137 101275151 CACAAGCATTACTCGTCCACGTAAA GGGACTTCTGCAGAG - GGGGAAGGTCACATTTTACCATTAG deletion homo_sapiens_core_58_37c TMTC4 ENSG00000125247 CCDS9497.2 ENST00000342624 Somatic Capillary sequencing 28747871 PD3890a 2 116377420 116377434 TCTGAACAGTGGAGACAGCTGGCAC CTGAGAGTTGCTTAT - TTGAGTAGATGAACGAGTGATTTAA deletion homo_sapiens_core_58_37c DPP10 ENSG00000175497 CCDS46400.1 ENST00000410059 Somatic Capillary sequencing 29037782 PD3890a 15 60133633 60133643 TGATCAGGTTATTAGGAGCAAGGAC CGGGGGTGGAT - GAATGTCACAGGTAGGTAATGTGCT deletion Somatic Capillary sequencing 28532721 PD3890a 4 140213600 140213602 AAATGTATAAACCTAATACAAAACA AAC - AACAAGCTTGTTTTTCAGTATTTAA deletion homo_sapiens_core_58_37c NDUFC1 ENSG00000109390 CCDS3746.1 ENST00000394228 Somatic Capillary sequencing 28878812 PD3890a 13 61984629 61984642 ACATTTCCTGTAATGAAGAATATAT ATATGTATGTATAA - ATCTATTTCCCTTGTAATAATAACA deletion homo_sapiens_core_58_37c PCDH20 ENSG00000197991 CCDS9442.2 ENST00000409186 c.? p.? Somatic Capillary sequencing 28813180 PD3890a 8 10599411 10599411 AAGACAAAAATAGAAACAAAGAATA G - GGGCAACGAATGAAAAACAGTAACA deletion homo_sapiens_core_58_37c SOX7 ENSG00000171056 ENST00000354846 Somatic Capillary sequencing 28504110 PD3890a 1 233319949 233319969 ATTCCTATGAGAAATGAGTAACTAA GACCCTAGAAATAATTCTCAT - GACATGGATCAGAGAAAAGGTCAAG deletion homo_sapiens_core_58_37c PCNXL2 ENSG00000135749 CCDS44335.1 ENST00000258229 Somatic Capillary sequencing 28495718 PD3890a 1 174433432 174433441 TTACAAAGTTATAATTTGTGATGCT TTCCCCATCC - TTAATTAATTGTTCTCTTTAACTAC deletion homo_sapiens_core_58_37c RABGAP1L ENSG00000152061 CCDS1314.1 ENST00000251507 Somatic Capillary sequencing 28473365 PD3890a 8 89789837 89789837 GTCACCTGTCAATGAGAAATTCCTG C - TTTCAAAAATTCCATGAATGAGAAA deletion Somatic Capillary sequencing 28435346 PD3890a 20 50823670 50823670 CTTTCTTTGACAAATGTTGGTATTT G - GGATTTCTTGTGATAATGCAGATGG deletion Somatic Capillary sequencing 28753209 PD3890a 2 158552203 158552218 GGGTTCCAACCTTCCTCTTCAACCT TATGTCCATCATTTAA - TTGTATGCTGTGATAGAAAGAATAA deletion Somatic Capillary sequencing 28411976 PD3890a 9 6053218 6053219 GAGGAAGAAATTTCACGGAAAGGGA AC - AACTGGAGCAGAGGCCTGGGGACAT deletion Somatic Capillary sequencing 28718066 PD3890a 16 60956351 60956381 CCCCAATCTTCATTTACACACATTT TTTAATTCCTTCTTTTTTTGTTATAATGTTC - TTTAAGTCTTTTCAAGCTTGGATAT deletion Somatic Capillary sequencing 28478680 PD3890a 8 130260115 130260121 CCAGAGTGTATAAGCAGAAGGCAAC TTTCTTT - TTTCAGCTGTTCCTTTAAACTTGTG deletion Somatic Capillary sequencing 28588245 PD3890a 18 37459646 37459659 CTCCTCCTGCTTCTGCTGTTTGTAG GAAGAGGCAGACTT - GAAACCCTGCATTGTCTGTGGCCTA deletion Somatic Capillary sequencing 28796706 PD3890a 10 73900358 73900359 GCAGAAATATATGTGTAATGTGATC - ATTT TTTATGTAAAATTATATGCATAGAC insertion homo_sapiens_core_58_37c ASCC1 ENSG00000138303 CCDS31219.1 ENST00000373101 Somatic Capillary sequencing 28536201 PD3890a 4 165495960 165495960 TTAGTTCAGCCCCTGTGGAAAGCAG T - TTGGAGATATCTCAAAGAACTTAAA deletion Somatic Capillary sequencing 28382653 PD3890a 6 75023863 75023864 GTAATTACATGTACATTGAAAAAAA - C GAAGCTAATTTAAGAAAGTCTTCTC insertion Somatic Capillary sequencing 28505869 PD3890a 1 244000860 244000860 TCAGTAAGTCCAAATTGGTAATATA T - TTTTTTAAATACACCATGACCAAAT deletion homo_sapiens_core_58_37c AKT3 ENSG00000117020 CCDS31077.1 ENST00000366539 Somatic Capillary sequencing 28388084 PD3890a 6 130795570 130795571 TATGGAGGGAATGAAATTTTGGGAG - A GTAGTTTCGGCTTAGCTAAGTTGAC insertion Somatic Capillary sequencing 28639112 PD3890a X 97226973 97226974 CTACCTTGGAATGACTTTTATGTTA - A AAAAATTGATTTTTAAAATCTTGTT insertion Somatic Capillary sequencing 28373692 PD3890a 6 116007935 116007963 TTCAATGGTGAAAAATCCAATAAGA AATATAGTTTAGAAAGAAGTTGCCACCTT - TGTAGTTCTGCAGACTTAATGTGGA deletion Somatic Capillary sequencing 28944007 PD3890a 3 59866450 59866483 TCAGGCATACAGGAATCCATCAATC AGCTGCTGTTTTTATAAGAGCAAGAACAGAGGTA - ATTCAGACATAAAGTGAATTAATTC deletion homo_sapiens_core_58_37c FHIT ENSG00000189283 CCDS2894.1 ENST00000468189 Somatic Capillary sequencing 28880530 PD3890a 13 74867275 74867290 CAAGCAGAAATATTTCAATTTACCC ATCACATTATACGAAT - GAGATGTTAAGACAATGAGAATACA deletion Somatic Capillary sequencing 28967651 PD3890a 3 170444818 170444822 TGGAGATAGAAGCTCTCAAAAGAGA CCTTC - CCTATTCTCCCAACTCCCACTTCTC deletion homo_sapiens_core_58_37c CLDN11 ENSG00000013297 ENST00000486975 Somatic Capillary sequencing 28964848 PD3890a 3 148882596 148882604 CACAGTTATCATCTTTGTGGCATCC TGACCCAAA - TGCTGAGTGTCTGTTTTCCTTATCC deletion homo_sapiens_core_58_37c HPS3 ENSG00000163755 CCDS3140.1 ENST00000296051 Somatic Capillary sequencing 28368958 PD3890a 6 78410079 78410079 TCTGACACTGCTGTGCTAGCAATCA G - GGAGACTCCGTGGGTGTAGGACCCT deletion Somatic Capillary sequencing 29046478 PD3890a 15 48237613 48237614 TTTTTGTCTGAAGCAGTATGCTACA - GCTACAT TGAAGTGTTCACTTTATGTTAAATA insertion Somatic Capillary sequencing 28476759 PD3890a 8 116715907 116715944 CTCGAGTTTTTCGATGTTGTTTTCT ATTTATGGAAAGTCATAGCCTTGGGAAGTCTTTATGGC - ATTTGCTAGATAAACTGTTTTGCTC deletion homo_sapiens_core_58_37c TRPS1 ENSG00000104447 ENST00000422939 Somatic Capillary sequencing 28816538 PD3890a 8 32813084 32813084 CAGCAGTGAAGAGAAAAACCTGAAA G - TCCATTGATTTGTAGCACCTCATCT deletion Somatic Capillary sequencing 28786668 PD3890a 10 95107748 95107757 GCCTGGGTCAAATCCTGGCACTGCC ACCATGAACT - ACCTGGCTAACCCTTCCATGCCCCC deletion homo_sapiens_core_58_37c MYOF ENSG00000138119 CCDS41551.1 ENST00000359263 Somatic Capillary sequencing 28847244 PD3890a 11 102427539 102427557 AGGGTGGGAAATTCCATGTTGGAAG CCCTCTTCCTGGGGCTCAT - CCCTGAAGGCTGTATGGTTGCTGCC deletion Somatic Capillary sequencing 28864739 PD3890a 5 30717133 30717133 TGGTATCTCTTTTCTGATGTTCATG C - TTTATCAGAACAGCTAAGTATCATG deletion Somatic Capillary sequencing 28861807 PD3890a 5 11164746 11164777 CTTCTTGAACACACAAGCTCCTTTG TGTCGCAGATCCCTGGACTTGCTGCTGCCTCA - TTCTGGAACATTGTTTCCTAGATCT deletion homo_sapiens_core_58_37c CTNND2 ENSG00000169862 CCDS3881.1 ENST00000304623 Somatic Capillary sequencing 28485634 PD3890a 8 93747668 93747669 TACCAAGCAGATGTTTAGATAACTT - C TTATTTTAAAGCCTGTCCTTCTTAG insertion Somatic Capillary sequencing 28988297 PD3890a 7 104665730 104665730 TTTGTGCTTTTGTTTCTTGGTCTGC A - AAATGGAGATAATAATAGAGCCTAT deletion homo_sapiens_core_58_37c MLL5 ENSG00000005483 CCDS34723.1 ENST00000311117 Somatic Capillary sequencing 28367905 PD3890a 6 69925075 69925083 GATGCAGTGTCACAAAAAGGACATT AGAGATACG - ATTGGATTTTGAAGGTTTAAAGATT deletion homo_sapiens_core_58_37c BAI3 ENSG00000135298 CCDS4968.1 ENST00000370598 Somatic Capillary sequencing 28784692 PD3890a 10 78540984 78540984 TAAAAAATTGCCACAAACTTAGTGG A - TTAATGCAAATGTATTATTTTACAT deletion Somatic Capillary sequencing 28532464 PD3890a 4 138554372 138554377 CCATAAGTAAAGGGATGAAGAATAA TGTACC - AAGCAAATGGAAAACAGAAAAAAGC deletion Somatic Capillary sequencing 29052986 PD3890a 18 8160725 8160739 GTGGCTAGGCTGCAGCCTAGTAATT TATTCAGGACTTAGC - ATTTCCAGGCAGCTCTTCTCGCTGT deletion homo_sapiens_core_58_37c PTPRM ENSG00000173482 CCDS11840.1 ENST00000332175 Somatic Capillary sequencing 28690855 PD3890a 7 30441720 30441739 GAGGTGGAAGCTTTGTTTTGGATCT GAGACCATCTTCCAATATAA - GCATTTAGTGTTAAATTTATAAATT deletion homo_sapiens_core_58_37c AC006978.1 ENSG00000251425 ENST00000507825 Somatic Capillary sequencing 28582516 PD3890a 1 85169122 85169123 AAGAATGACATACTGATCAATAAAA - A TTTTCAAGCATGAAAATATCAACAT insertion Somatic Capillary sequencing 28681981 PD3890a 22 44186657 44186673 TGCAAGGGAGGAAATGAAGACAGAA GTCTTCTGCAATAATCC - GTGCAAGAGAAGACAGCGGCTCAGA deletion homo_sapiens_core_58_37c EFCAB6 ENSG00000186976 CCDS14049.1 ENST00000262726 Somatic Capillary sequencing 28741013 PD3890a 12 34707506 34707508 CAGTATCTCAAAGAGCTTCCTTCTG TTT - TTTTCCCCATTATATTCCCTTTTTC deletion Somatic Capillary sequencing 29038310 PD3890a 15 63835091 63835108 AGACAGAAAGTCAAATAATTGGCAT AAATATTGGAAACAAAAA - ATTATTTCTACTTTGAAATGATACA deletion homo_sapiens_core_58_37c USP3 ENSG00000140455 CCDS32265.1 ENST00000380324 Somatic Capillary sequencing 28537395 PD3890a 4 173413778 173413791 AGAGTTTAGCATTTGAGGTGAAAAA CTTTGTCTTTATTT - CTAATTGGCATCTTACTGAATGTGC deletion homo_sapiens_core_58_37c GALNTL6 ENSG00000174473 CCDS34104.1 ENST00000404275 Somatic Capillary sequencing 28520300 PD3890a 4 55530183 55530187 GCCCCTGATTCGAAGTAGAATTTGG TTTTC - TTAAGTGTAAAGTGCTCTGGGCAGG deletion homo_sapiens_core_58_37c KIT ENSG00000157404 CCDS3496.1 ENST00000288135 Somatic Capillary sequencing 28753054 PD3890a 2 157097569 157097570 CACTGCCATTCCTCCAGTTATCTCA CT - CTGTTTTCCTTTTCCATTTAATCCA deletion Somatic Capillary sequencing 28421993 PD3890a 10 2701798 2701807 GTCCTACAAAAATTATGCTTTAGTC TTAAGGAGTA - TTATGCATTTCTGGGCACACTGGTG deletion Somatic Capillary sequencing 28478712 PD3890a 8 130525601 130525624 ACAGAAGTGAAAGCGGAAACCCCTT ATACATCTTGTGAGACTTATTCAC - TACCACAAGAACATGGAGGAAACTG deletion homo_sapiens_core_58_37c AC013300.1 ENSG00000229140 ENST00000446592 Somatic Capillary sequencing 28844482 PD3890a 11 82707208 82707218 TTCTATTCACTTATCATGGGAAAAA CCCTGACATTT - CCAAAGTGACTCTGGGCCCTCTAGC deletion homo_sapiens_core_58_37c RAB30 ENSG00000137502 CCDS8264.1 ENST00000260056 Somatic Capillary sequencing 28940803 PD3890a 3 30351821 30351824 CAGTCCTCTTTCAGGGAGGAAAGAT TATC - TATAATTGTGAGAGTAAAAAATAGA deletion Somatic Capillary sequencing 28565296 PD3890a 1 60138866 60138876 GATAAGTAAGTAAAATACAATGTTG GAAGGTGGGAT - GAAGCAGTTAAGGGGGTAAGGAGTG deletion homo_sapiens_core_58_37c FGGY ENSG00000172456 CCDS44155.1 ENST00000371218 Somatic Capillary sequencing 28746466 PD3890a 2 104132654 104132655 GTTGTACATATATTGACCTTGTATG TA - TAAGTTTATTTCTAGATTTTCTATT deletion Somatic Capillary sequencing 28633521 PD3890a X 123221298 123221335 TTAGGACATAGCCAGGATCATGGTG TCTGGTACCTCAGCCAGGAAGGCTCAAAGGCTGGTGGC - TGAAATCATACGGAGGCATCTTCAC deletion homo_sapiens_core_58_37c STAG2 ENSG00000101972 CCDS14607.1 ENST00000371160 Somatic Capillary sequencing 28629847 PD3890a X 83280729 83280729 TATGATTTTGATCATTTTGCATTTG C - TGAGTATTGTTGTATGTCTAATTAT deletion Somatic Capillary sequencing 28676278 PD3890a 12 111353328 111353329 AAAAAGTTATTTCAAGAGAAAAAAA - A ATATCTGAAGGTACTCAAAGACTAA insertion homo_sapiens_core_58_37c MYL2 ENSG00000111245 CCDS31901.1 ENST00000228841 Somatic Capillary sequencing 29008485 PD3890a 17 48936060 48936079 CAGTCAAGCAAGGGTACGTATCTGA TGTAGCATGCCTATGCCATT - TTCTGTTTGTGTACCGAAAGGATAT deletion Somatic Capillary sequencing 28720478 PD3890a 16 78275701 78275701 ATTGCTCAGATTCACTTGGCTCAGA G - AGGGCGGAGTCAGAGTGACCCAGGT deletion homo_sapiens_core_58_37c WWOX ENSG00000186153 CCDS42196.1 ENST00000408984 Somatic Capillary sequencing 28630626 PD3890a X 90316347 90316347 CCCCTACTTATAAATATAGTAATTC A - AAAACAATATCACATCCATGGAGTG deletion Somatic Capillary sequencing 28565164 PD3890a 1 58877502 58877517 AAGTTGGCCCTAATTTACTTTTGCA AATTTATCTCTCTATT - TTGTACACTTTGCTTTTGCTGTTTC deletion Somatic Capillary sequencing 28624726 PD3890a 19 23007564 23007579 GGTCCCAAATCTCACATGTAAATGC TGTTCACAGTTGGAAT - TGTGACTGGTATATGTGGATCTAGC deletion Somatic Capillary sequencing 28830262 PD3890a 9 116593169 116593186 ACATTCACCTTGATGGCCAAAATTT AAACCACTCACATCAGTA - ATGAAGGGAACCACTGAAACGCCTG deletion Somatic Capillary sequencing 28376037 PD3890a 6 135401693 135401728 AACCAGTGTTGGGTTTTGTTGTTTA AAGATGTTTCAGGGATTTTTACATTGCTTTTAATTT - AAGAAACAGAAGATACGTAGTATAA deletion Somatic Capillary sequencing 28564272 PD3890a 1 52242781 52242798 TATATGGTGGCGATGTTAGGCAACC AAGTTTAACACTTTAAAA - AATTCTCAAGAGCCCGTTAATAGGT deletion homo_sapiens_core_58_37c OSBPL9 ENSG00000117859 CCDS44145.1 ENST00000337809 Somatic Capillary sequencing 28765656 PD3890a 2 105884091 105884092 TAAAGTGGCTACGTTCTAGTTTTGC - GAGTTGACAT AGTTGACATGCATTACTCCATGGGT insertion homo_sapiens_core_58_37c TGFBRAP1 ENSG00000135966 CCDS2067.1 ENST00000393359 Somatic Capillary sequencing 28866476 PD3890a 5 42108873 42108884 AAACATTAGGGTTAAAGCAAGGGTT AGGATTAAAGCC - AAATTCTTAGGAATAGCTTTATTTA deletion Somatic Capillary sequencing 28719316 PD3890a 16 71008278 71008306 CAAGAGCTGCTCTAGAGAAAGCCCC CACTGGGTCAGAATGACTGCTCAGAGGAT - CACTGAATAGCCCAAGAATCCTTTT deletion homo_sapiens_core_58_37c HYDIN2 ENSG00000157423 CCDS42189.1 ENST00000393567 Somatic Capillary sequencing 28480221 PD3890a 8 141436932 141436932 TTGCTTCAGACAGGAAAAGAGAAAA G - AAAAGCTACTATTACTCATACCCTA deletion homo_sapiens_core_58_37c TRAPPC9 ENSG00000167632 CCDS34946.1 ENST00000389328 Somatic Capillary sequencing 28843644 PD3890a 11 76226747 76226766 AAAACTTTAGGCAAACAATACTGCC TTATTTGCTCAATGCCAACA - TTGGGTTTGGCACTAAGACAGCATA deletion homo_sapiens_core_58_37c C11orf30 ENSG00000158636 CCDS8244.1 ENST00000334736 Somatic Capillary sequencing 28628386 PD3890a X 66487155 66487165 TGTTGAGCACCTTTTCATGCACATT TGCCTTCTGTA - TGCCTTCTTTTGAGAAATGTCTATT deletion Somatic Capillary sequencing 28736985 PD3890a 12 8844809 8844810 TCATTGCCTCATTTTCTCTTCAGTC AG - AGAGGACTAACAATATTTGCTCAAC deletion Somatic Capillary sequencing 29023980 PD3890a 4 37345979 37345979 TGCTTGATTTTTATCTTTTTCATCA T - TTTTTTCCCATAAAGACATATGGGA deletion homo_sapiens_core_58_37c KIAA1239 ENSG00000174145 CCDS47040.1 ENST00000309447 Somatic Capillary sequencing 28452580 PD3890a 5 157133623 157133631 TAAATAATTTGCACTTCTCCGATGA TTGGATAGG - TTGAGCACCTCTTCATAAACTTAGT deletion Somatic Capillary sequencing 108565134 PD4199a 4 190803392 190803394 AAGAATAAGAAAAAGGATCCAAAGG AGA - AGGAGAGAAATAAAACGGGACTGAG deletion Somatic Roche 454 pyro-sequencing 108513235 PD4199a 6 14922528 14922529 GGTAAATCTGCTGCTGAGCATAAGG - TG GTGCATGAACGCCCCTTCTCCTTGA insertion Somatic Roche 454 pyro-sequencing 108109347 PD4199a 10 28800944 28800945 AGCATGCTAGAAGGTCCTGTTTCAA - ATAAG TAAAATAAAATAAAAATAAAAATCA insertion Somatic Roche 454 pyro-sequencing 108050024 PD4199a 17 38933392 38933392 TGACAATGGTGGTTTTAGATGAATC T - AAAATGCCACATATAAACTGTTTAG deletion homo_sapiens_core_58_37c KRT27 ENSG00000171446 CCDS11375.1 ENST00000301656 c.1241-2dela p.? Somatic Roche 454 pyro-sequencing 108620961 PD4199a 2 145022464 145022464 ACTTCCCATGTATCTTGCCAGGAGA G - AAGGAGCGCAATGGTCAGAAATGCT deletion homo_sapiens_core_58_37c GTDC1 ENSG00000121964 CCDS33300.1 ENST00000409214 Somatic Roche 454 pyro-sequencing 108407838 PD4199a 1 154756052 154756054 TATGCACCCCAGCATGTTTGCTAAT GAA - GAAGATTCCTCTGGACAGGCTTGGG deletion homo_sapiens_core_58_37c KCNN3 ENSG00000143603 CCDS30880.1 ENST00000271915 Somatic Roche 454 pyro-sequencing 108626552 PD4199a 2 190453790 190453790 TCTGACTTCTTGTGTTCACATATTT C - AGAGACTTCTCATCAGTGCCATTTG deletion Somatic Roche 454 pyro-sequencing 108292386 PD4199a 19 37624016 37624019 AGTCACAAAGGGAAAAAAGTACATA TCAC - TCAAGAAGGAAAAGAAAAATGTCGA deletion homo_sapiens_core_58_37c ZNF585A ENSG00000196967 ENST00000392159 Somatic Roche 454 pyro-sequencing 108440709 PD4199a 15 69900319 69900320 AGACCACAGGGCTGTGACCTTCCAC AG - AGATGTAGTCAGCTTGGGGAGAGCT deletion homo_sapiens_core_58_37c AC100826.2 ENSG00000248263 ENST00000505880 Somatic Roche 454 pyro-sequencing 108090004 PD4199a X 117940343 117940345 ACTTTGTGCTTTTATTAATTCATTC AAG - AAGGCTTTTGACGAATATAGATCGT deletion Somatic Roche 454 pyro-sequencing 108220766 PD4199a 7 39326592 39326592 AGGGAGTTTGTAGTCGAATAAGAAT G - AAATTCCTAACTTAAAAGATGTCAA deletion homo_sapiens_core_58_37c POU6F2 ENSG00000106536 CCDS34620.2 ENST00000437026 Somatic Roche 454 pyro-sequencing 108480902 PD4199a 3 128980012 128980012 TGACTGCCCTCCTGGAGCTTCCTTT C - TAGGGATGGGAGAGGAACAGTAAAC deletion homo_sapiens_core_58_37c COPG ENSG00000181789 CCDS33851.1 ENST00000314797 Somatic Roche 454 pyro-sequencing 108065212 PD4199a 11 11876145 11876147 CCCAGGGGCCATCACAATGTGCTGT ACA - TTGTTGTTATTCAACAAATATTTGT deletion homo_sapiens_core_58_37c USP47 ENSG00000170242 CCDS41619.1 ENST00000339865 Somatic Roche 454 pyro-sequencing 108087239 PD4199a X 82405333 82405333 TTCCAAACCCAAAGTGAAAAAAAAA T - ATATAATCAGGAGACAAGAAATCTA deletion Somatic Capillary sequencing 108655847 PD4199a X 38844591 38844591 AGCCTATCGTTAAATGTTAATGAAT G - AAAAAATGAACTCCTGTAGAGACCA deletion Somatic Roche 454 pyro-sequencing 108451377 PD4199a 15 67450293 67450294 GAGGGAGTTGCTAGAGAAAGACCTT - G GGGGTCTCTCATCAGGAAGCCAGTG insertion homo_sapiens_core_58_37c SMAD3 ENSG00000166949 CCDS10222.1 ENST00000327367 Somatic Capillary sequencing 108413060 PD4199a 1 197872493 197872496 GAGTGAGAAAAAAAGACATTGACAC ATTT - ATTTTAATTTTTCCATTGCCTTCTT deletion homo_sapiens_core_58_37c C1orf53 ENSG00000203724 CCDS44290.1 ENST00000367393 Somatic Roche 454 pyro-sequencing 108175631 PD4199a 14 22620010 22620011 CCATGACACTATGAAAAGAGCAAGG - T TTCTAAAGGCTCTGTCCCTTATTGG insertion homo_sapiens_core_58_37c TRAC ENSG00000229164 ENST00000446346 Somatic Roche 454 pyro-sequencing 108592874 PD4199a 12 46515587 46515587 ACAAAGAGATGCTGAGTGGGAGAAG A - CTGATTTTAGGCTTGGAACATAAAT deletion Somatic Roche 454 pyro-sequencing 108598421 PD4199a 12 93415338 93415338 TTATTAACAAATTTAGTTGAGGGAA G - AAAGAACATGAATCAGAAAATTATA deletion Somatic Roche 454 pyro-sequencing 108169553 PD4199a 14 70129648 70129650 GAAGTGTGTGATGTAATTCCCAAAT AAC - AACAACAGAATTGGTATGTGACCTA deletion homo_sapiens_core_58_37c KIAA0247 ENSG00000100647 CCDS9796.1 ENST00000342745 Somatic Roche 454 pyro-sequencing 108270387 PD4199a 2 75995157 75995158 TAGGTTTATCTTATTTCTCTTTTTT - T TTTTCAAATTCCACTAATCCTTCAA insertion Somatic Capillary sequencing 108067638 PD4199a 11 28537062 28537062 CTATAAGGCAGGAGTTGGTAACTTA C - AGCCTATGGGCTACATATGGCCCTT deletion Somatic Roche 454 pyro-sequencing 108362251 PD4199a 8 61884418 61884419 CATCACCCCCACCCCCACCTTCCCC - C TTTCTCTTTAAGATACCCCAGGCTG insertion Somatic Capillary sequencing 108680008 PD4199a 19 24349024 24349024 AACTCTTCAAAGAGTAGGAAACATT C - CCTGTTCATATGCATTGCTTAATCC deletion Somatic Roche 454 pyro-sequencing 108375757 PD4199a 10 82224464 82224464 TCCCATGTGCAGCTCATTGTCTGGG C - CTGGGTCCTTGGTAGCACAGAGGTT deletion homo_sapiens_core_58_37c TSPAN14 ENSG00000108219 CCDS7369.1 ENST00000429989 Somatic Roche 454 pyro-sequencing 108517727 PD4199a 6 47932059 47932060 AGCTCATGTTAAGTGTTATTACCAC - T TTTTTTTTAAAGGAAGTTGCATTGA insertion homo_sapiens_core_58_37c C6orf138 ENSG00000244694 ENST00000398738 Somatic Capillary sequencing 108590443 PD4199a 16 78815946 78815947 TACCAGATTTTGGTGAACTCTCTGT - T TTGGAAGGGTAGGTGGCGGCTGCGG insertion homo_sapiens_core_58_37c WWOX ENSG00000186153 CCDS42196.1 ENST00000408984 Somatic Capillary sequencing 108400477 PD4199a 5 2250400 2250401 TTCTAAAAATAAAGTTTTCTTATCT - A AAAAAAATGGCGATCAACAAACACT insertion Somatic Capillary sequencing 108486324 PD4199a 3 174691439 174691440 TCCGTCATTGTGCAAACATCATAGA GT - GTACTTTCCGAAACCTAGATGGCAT deletion homo_sapiens_core_58_37c NAALADL2 ENSG00000177694 CCDS46960.1 ENST00000454872 Somatic Roche 454 pyro-sequencing 108405454 PD4199a 5 45842209 45842210 TATGAATTTTTAAAAAGTTTTTTCT - T TTCTGTAAAAAATGACATTGATAGT insertion Somatic Roche 454 pyro-sequencing 108436286 PD4199a 15 38252354 38252354 TACATTTGCAGTCTTTTTTAAAATA T - TTTTTTCCCTACATTTTTGTCCCTC deletion Somatic Capillary sequencing 108192849 PD4199a 9 122484980 122484980 CTGATTATTGCAGGTGTCAGTCTGG A - AAAAATAAATCCTGGTCCCTTTCCT deletion Somatic Capillary sequencing 108594456 PD4199a 12 57766414 57766414 TTTGGAAAGAGCAGTTATGATAGAG A - AAGCAAATCTAAATGACATAGGAAG deletion homo_sapiens_core_58_37c R3HDM2 ENSG00000179912 CCDS8937.2 ENST00000347140 Somatic Capillary sequencing 108102749 PD4199a 10 21813596 21813596 CTACGCTAAAAGAGGGCAGAGAGCG A - AAAAGAATGGAATACAAACTCTCCC deletion homo_sapiens_core_58_37c C10orf140 ENSG00000180592 CCDS44363.1 ENST00000449193 Somatic Capillary sequencing 108067829 PD4199a 11 30211851 30211851 ATACCCCAACCTTCTATCCAGTGGG T - TTCTTAACTCTATCCCTCTGACCTT deletion Somatic Capillary sequencing 108293948 PD4199a 19 47527796 47527796 CAAAAGATAAAATGACTTTCTTTTT C - AGAGGGAGGCACTATTATGATTCCC deletion homo_sapiens_core_58_37c NPAS1 ENSG00000130751 CCDS12694.1 ENST00000253050 Somatic Capillary sequencing 108293538 PD4199a 19 45264103 45264103 GACCACATCTGTGGTTTTGTTGTTG T - TTTTTTGGGGGGGGATGGAGTCTCA deletion Somatic Capillary sequencing 108421855 PD4199a 1 145699137 145699138 GATCAGGGGAGGGTTTCAGAAATCA - G AGTATCTCCTTTTGCATCATCTCAT insertion homo_sapiens_core_58_37c CD160 ENSG00000117281 CCDS923.1 ENST00000401557 Somatic Roche 454 pyro-sequencing 108603741 PD4199a 12 131446374 131446374 TTAAAATTTTGATAGATTTTGCTTT A - AAAAAAAATCTGAATTTCTGACTCT deletion homo_sapiens_core_58_37c GPR133 ENSG00000111452 CCDS9272.1 ENST00000261654 Somatic Capillary sequencing 108222863 PD4199a 7 55649987 55649987 CTCTCTGATTTTTAGAATTTTCAGC T - TTTCTGCTCTGGTTTCTCCCCATCT deletion Somatic Roche 454 pyro-sequencing 108452138 PD4199a 15 73630244 73630245 CTGAGAGCATGGTGGTGGTGAAGCC - T GAACTGCGGTGAGGAGGACTGTGGG insertion homo_sapiens_core_58_37c HCN4 ENSG00000138622 CCDS10248.1 ENST00000261917 Somatic Roche 454 pyro-sequencing 108441233 PD4199a 15 74161575 74161575 CTCTTTCCATCATCTTTATAATCTA G - GTTGCAATACTTCCCCACCCCCACC deletion Somatic Roche 454 pyro-sequencing 108093980 PD4199a X 75778191 75778192 CCACTTTAAGCTGGGAGTAAAATGA - AT TAAGCATCCCTGTGGCCGCCACCAC insertion Somatic Roche 454 pyro-sequencing 108357675 PD4199a 8 121946003 121946005 AGAGCACGCTGTGATAGAATTGACA TGT - TGTGATTTACCAGACACTGAGAAGA deletion Somatic Roche 454 pyro-sequencing 108187136 PD4199a 9 78040072 78040074 CCACTATTTGGGCAAGTACTGGGAA ATC - AACAGACAGGTGTGATTTAGGAAGG deletion Somatic Roche 454 pyro-sequencing 108485395 PD4199a 3 165799246 165799246 TGTATAATATATAATGATTTAGATC A - AAAGGTAGGGACAGTTATGCAAACA deletion Somatic Roche 454 pyro-sequencing 108439308 PD4199a 15 61293210 61293211 AATAAATGGAAAAAAAAGACCTCTC TT - AACTGAGGTTAGTAAAAGTATCAAG deletion homo_sapiens_core_58_37c RORA ENSG00000069667 CCDS10177.1 ENST00000335670 Somatic Roche 454 pyro-sequencing 108351394 PD4199a 8 66993198 66993198 TTTGAAATAGAAGAAAGTGGGCATC A - AAAAAAGTCACCAACCCTTGACTTT deletion homo_sapiens_core_58_37c DNAJC5B ENSG00000147570 CCDS6183.1 ENST00000276570 Somatic Capillary sequencing 108510470 PD4199a 6 57858980 57859003 GGATCATAATCTAATTTAAAGAGAA TGTATTCAAGTGCACAGTTTGAGG - GTAGCCCTCCTAGAAACACTAACTT deletion Somatic Roche 454 pyro-sequencing 108188311 PD4199a 9 87593186 87593186 TTGCCAAGTTGTGAATGCAAAGAAT A - AGTCCTTGAAGGAAATTAAAGTGCT deletion homo_sapiens_core_58_37c NTRK2 ENSG00000148053 CCDS6671.1 ENST00000376214 Somatic Roche 454 pyro-sequencing 108417232 PD4199a 1 227858859 227858859 GTGGTGCCATCATAGTTCACTGGAG C - CTCAAACTCCTGGGCTTAAGCAATC deletion Somatic Roche 454 pyro-sequencing 108179695 PD4199a 14 59032603 59032604 ATGAGATCGCTTGTAGTTTTGTTTT - T TTTTTTTTAATGATGTGTTAAGTTC insertion Somatic Capillary sequencing 108417063 PD4199a 1 226610446 226610446 CATTGCACTGTGCCCATCTGCTTGA G - GGGTCTGCCTATAGTGTAAGCAAGG deletion Somatic Roche 454 pyro-sequencing 108221086 PD4199a 7 42216803 42216805 TAGAAAGAGAGTGGCCAGAGGTGGA GAG - GAGTGTCAGCAAAGGCCTCAGGGAC deletion homo_sapiens_core_58_37c GLI3 ENSG00000106571 CCDS5465.1 ENST00000395922 Somatic Roche 454 pyro-sequencing 108654655 PD4199a X 25537924 25537924 GTCTGGTATATATAAAATGTTTCCC C - CATTCCAGTGAAGAATCAGAGTACT deletion Somatic Capillary sequencing 108407938 PD4199a 1 155706144 155706161 AACTGTCCAAAATACATACACACAA TATGTGTGTGTGCGTGTG - TATGTGTGTGTATTCACACAAGTAG deletion homo_sapiens_core_58_37c DAP3 ENSG00000132676 CCDS1120.1 ENST00000368336 Somatic Roche 454 pyro-sequencing 108439926 PD4199a 15 65009600 65009600 CAAAGACAATTCAACGCCACTTTTT C - AAGGTGAAAATAGAGCCCAAAGCCC deletion Somatic Roche 454 pyro-sequencing 108037001 PD4199a 8 3683548 3683550 TTATTCACTTGCCTTTTTCAAAGGC CAA - CGTGTTGTCTTTCAAATGGAGGCCC deletion Somatic Roche 454 pyro-sequencing 108018602 PD4199a 17 9965008 9965008 ACAGTGTGACAGCTCTGGAGCCTCT G - GGGGGAAGCTGTAGGAAGGGGCAGC deletion homo_sapiens_core_58_37c GAS7 ENSG00000007237 CCDS11152.1 ENST00000323816 Somatic Capillary sequencing 108413811 PD4199a 1 203006675 203006675 AGGTGGTAGCTTTCTAACGTAGACA G - GGAGGTTGGAATCTGATTGTAGGCA deletion homo_sapiens_core_58_37c PPFIA4 ENSG00000143847 ENST00000367240 Somatic Roche 454 pyro-sequencing 108107426 PD4199a 10 11771185 11771186 TCCCTCTGCCCTTAACATAAAAAAA - A CCTAAAATTTGTGCTGACTTAAGAT insertion Somatic Capillary sequencing 108136827 PD4199a 5 162395357 162395358 TACAAATTGCTGATGGATTTTTTTT - T TTTTCCTGAATTCACTGGCTAATAA insertion Somatic Capillary sequencing 21161927 PD4109a 12 78634188 78634189 TAAGTAGTTTATTTGGAGTGGGGGG - G GATCTTAAGAAGCGCCAATAGGGCA insertion Somatic Capillary sequencing 21257590 PD4109a X 78441199 78441199 CGAAGAAAGAGTCTAAACTCAGAAT A - AAAAAAAAGTTGTTTAAATAGAATA deletion Somatic Capillary sequencing 21068572 PD4109a 14 29607026 29607026 TAATTTTTAAAGATAGATATAGGGC T - ACTTGGGTTACATATTTCATCTTGA deletion Somatic Roche 454 pyro-sequencing 21015812 PD4109a 15 47557892 47557893 CTTTGCATGCCTCTCAATTTTTTTT - T TTGGAAACTAGACATTTTAGATAAT insertion Somatic Capillary sequencing 21182401 PD4109a 3 188847445 188847445 GGTCATTTTCTATTTTCCTCATTTT C - TCTATATTTATTAACTGAAACTCTC deletion homo_sapiens_core_58_37c TPRG1 ENSG00000188001 CCDS3292.1 ENST00000433971 Somatic Roche 454 pyro-sequencing 20794344 PD4109a 17 52316859 52316860 GATATCTTAATATGCAAATGTAAGC - T TTTTTCTAGAGTTAAAGAAAAGAAT insertion Somatic Capillary sequencing 21001212 PD4109a 15 32318445 32318446 AGAATAGTATATATCTAGAAAAAAC TG - TGCTGTTTTGGAAACAGAAAAGCAC deletion Somatic Roche 454 pyro-sequencing 20959374 PD4109a 3 997253 997254 AATTTTTCTCTCAAAGGCTCTAGCA - A AAAAAAATGGGGGATGTCCAAATTC insertion Somatic Capillary sequencing 21243830 PD4109a 4 108453596 108453597 AAATACTCTATGTTGATACAAAAAA - A AAGCTTCCAGTTCAGTTTCTTTCCA insertion Somatic Capillary sequencing 20828346 PD4109a 11 113215805 113215807 TTTACGTATTTATTTACTTTTATCT TAC - TAAGTTTTCAGTTTATTTATCTTTA deletion homo_sapiens_core_58_37c TTC12 ENSG00000149292 CCDS8360.2 ENST00000278593 Somatic Roche 454 pyro-sequencing 20907731 PD4109a 1 46150439 46150440 TAGCTTGTAATTTCTATTAAAAACT - T AAATATTTTTCCTGTAAAACCACCA insertion homo_sapiens_core_58_37c GPBP1L1 ENSG00000159592 CCDS528.1 ENST00000355105 Somatic Roche 454 pyro-sequencing 20701423 PD4109a 8 78550618 78550618 AATGCAAGGATTTCTTTTCTGTTTA C - TTTTACATTCCATGTGTGTAGAACA deletion Somatic Roche 454 pyro-sequencing 21084150 PD4109a 14 44658071 44658072 CCATGTGACTTGCTATGTCCAAAAA - A ATGAATGATAATGATAATGCCACTT insertion Somatic Capillary sequencing 20853884 PD4109a 2 177071726 177071727 TGTCTGGTTTGGACACGAGTCTATC TG - TAAGTTTTTGCAGGTGGGAGGCCTG deletion Somatic Capillary sequencing 20918613 PD4109a 10 53793265 53793265 GAGCTATTTTTTATGGACTATGTTT A - TATCACCTTTTTAGCTATTTAGCTA deletion homo_sapiens_core_58_37c PRKG1 ENSG00000185532 CCDS7244.1 ENST00000373980 Somatic Capillary sequencing 20962833 PD4109a 3 28820116 28820117 ACCCTCTCGCCCTGGAGATTTGTCA - T TGGGAGCTTTTTAATTATAAACTCA insertion Somatic Roche 454 pyro-sequencing 21040325 PD4109a 5 4475097 4475110 TAGAATTGTATATTGTGGGGTATCC ATTACTCTGTAAAA - ATTACCCCAAAATGTAGAGGCCCTG deletion Somatic Capillary sequencing 21263100 PD4109a X 126436344 126436344 CTTTTACCACTGAATTGAAAAACCA T - TTTTTTACTATATTAAATTCTCATT deletion Somatic Capillary sequencing 20690589 PD4109a 2 33974095 33974096 GGGCAACAAGAGTGAAACTCCATCT - A AAAAAAACAAAAACAAAACCAACCA insertion Somatic Capillary sequencing 20705938 PD4109a 8 109918951 109918974 ATTCAATAAATGACACAAATAGCAA GCACCGTTCAAGGTTCCAGAGGTT - GCAGTAGAATAAGACAGGTAAGGTC deletion Somatic Roche 454 pyro-sequencing 20573685 PD4109a 5 153276455 153276455 TCAAGATCACTCACTTACACTGCTT A - AAAAAAATGGTGCTACCTCTTGGCT deletion Somatic Capillary sequencing 21238517 PD4109a 4 64422830 64422831 TTATCTCTACTTCTTTTCATTTTTT - T TACTTACATAAACAATAGTCTTAAA insertion Somatic Capillary sequencing 20758161 PD4109a 1 169944763 169944764 TTTTTAAATTTATTTTTTATTTTCA - T TTTTTTTTAGAGACAGAGCCTCGTT insertion homo_sapiens_core_58_37c KIFAP3 ENSG00000075945 CCDS1288.1 ENST00000361580 Somatic Capillary sequencing 20763636 PD4109a 1 210234439 210234440 ATTTCCCAAAGGCCTGCCATTTAAT - T TTTTTTTCATTATCTCAGATACCAT insertion homo_sapiens_core_58_37c SYT14 ENSG00000143469 CCDS31014.1 ENST00000472886 Somatic Capillary sequencing 21152393 PD4109a 12 109482729 109482729 TCATGCTTTATTAATCTGATGGGGG A - AAAAATGTTTTCTGATTATAGTTTT deletion homo_sapiens_core_58_37c USP30 ENSG00000135093 ENST00000392784 Somatic Capillary sequencing 21232025 PD4109a 4 174679875 174679875 ACATAAGTAGCTAAAAATTTAAGCT A - AAAAATACTTTGAGTAGGAGAGAGA deletion Somatic Capillary sequencing 20600506 PD4109a 11 46071553 46071554 ATATTCTATCATATATTTCATGTAG TC - ACCACATGTTCAATTTGCTGTAGGG deletion homo_sapiens_core_58_37c PHF21A ENSG00000135365 CCDS44578.1 ENST00000418153 Somatic Roche 454 pyro-sequencing 20790730 PD4109a 17 60105854 60105865 AATAATCTATACAGCAAACCCTTGT GACATGACTTTA TTGTGAAAC CCTATTTCACAAACCTGCACATGTA complex Somatic Capillary sequencing 20936130 PD4109a 10 72223425 72223426 GGGAGACAGACAATAAACAAACAGG - A AAAAAAACCAGGAAAACATCAGATA insertion Somatic Capillary sequencing 20467998 PD4109a 6 11688976 11688978 ACGCATACATTCTTAGATAAAAAAT TTG - TTATTTGTTGAATATCAAACTATAT deletion Somatic Roche 454 pyro-sequencing 20550212 PD4109a 7 44866170 44866172 GGAGGACTCACTTTTTCAGTTTCTC CTT - CTTCTTCTTTTTTTTAAAGACAGGA deletion Somatic Capillary sequencing 20742260 PD4109a 1 184085565 184085568 GCACACAGCGTCTGTGGTGTGGTGC TTTG - TTTGTCTTGTCTGGATGTGAGAAAT deletion Somatic Roche 454 pyro-sequencing 20949257 PD4109a 3 25309029 25309030 TCTTTGATCTGTCTTTATCACCTCT TG - TTCAGTGTCCTCTTGTTTTTAGAAT deletion homo_sapiens_core_58_37c RARB ENSG00000077092 ENST00000404969 Somatic Roche 454 pyro-sequencing 21175686 PD4109a 3 142141937 142141937 AACAAAGATAAAAATACAATTGCAA T - AATAGATAATACATGTTAAAGTTCA deletion homo_sapiens_core_58_37c XRN1 ENSG00000114127 CCDS3123.1 ENST00000264951 Somatic Capillary sequencing 21274096 PD4109a X 143088088 143088089 TTGAAAGAATGAGAAGGAGAAAAAA - A TTCAGAGCTGAAAAAAATTGTGTTT insertion Somatic Capillary sequencing 21044103 PD4109a 5 28582966 28582966 GAGCTAAAAAGCACAATAACTAAGC A - AAAAAAAATCAGTGTACTTGAAGAT deletion Somatic Capillary sequencing 21174279 PD4109a 3 131415963 131415963 TTCTGAGATGAAGATATGGGTATAC G - TAAGGATTTAAGCCCTAACACCCAA deletion homo_sapiens_core_58_37c CPNE4 ENSG00000196353 CCDS3072.1 ENST00000357965 Somatic Roche 454 pyro-sequencing 20548861 PD4109a 7 35698702 35698732 AACACATGCAGACTAGCTAATTATA AGCTATACATAAATTTGAAAACAAAGAGCAG - AGCTGTTTTATTTTGATAGCAAATT deletion homo_sapiens_core_58_37c HERPUD2 ENSG00000122557 CCDS5446.1 ENST00000396081 Somatic Roche 454 pyro-sequencing 20897444 PD4109a 1 96169941 96169944 AATCACCTATCACAAAGGAAGACAT GAGA - GAGAAAGAAAGGAATAAAGGAGCTA deletion Somatic Roche 454 pyro-sequencing 21147588 PD4109a 12 73909825 73909825 TTTATGTTCTTCAGTTCCTCCAATA C - TTTTTACTTTTGTTATTGATTGATT deletion Somatic Roche 454 pyro-sequencing 21023973 PD4109a 18 5783718 5783721 ATATTGCCATAAATTAAGAATACTC ATAA - ATAGTTTCCAGTTTCTGAAGAAATC deletion Somatic Roche 454 pyro-sequencing 21134222 PD4109a 9 74647498 74647499 CTTTTATCCTTTTCTTTTATTTTTT - T AATTTGAGACAGAGTCTCGTTCTTG insertion Somatic Capillary sequencing 21192580 PD4109a 3 157844138 157844139 TTGATTTTTGTATTGACATGCTATG - T TTTTTTTCTGATTTTATTTTGTATA insertion homo_sapiens_core_58_37c RSRC1 ENSG00000174891 CCDS3181.1 ENST00000295930 Somatic Capillary sequencing 20467774 PD4109a 6 10362815 10362815 CAGAAACCAACACAGTAGCACAGTG T - TTTAAGAGAGGCGACCTCAGGCTTT deletion Somatic Roche 454 pyro-sequencing 20652512 PD4109a X 27919685 27919685 TGGACTTTCAATATCTTGTATTTCC A - AAAGGACATCCTGTTATCACATAGG deletion Somatic Capillary sequencing 21147430 PD4109a 12 72747974 72747975 GTAAAGAAGAAAATGACATTATAAC AT - AATACCATTTATTTAAAAAATCTAA deletion homo_sapiens_core_58_37c TRHDE ENSG00000072657 CCDS9004.1 ENST00000261180 Somatic Capillary sequencing 20528804 PD4109a 18 34811298 34811301 CCTCGAATATAATAATGCATAAAAA TATT - TATTAAGATGAGAAGTGACCATTTC deletion Somatic Capillary sequencing 21017169 PD4109a 15 58194387 58194388 ATTTTGTTGATCTTTTCAAAAAAAA - A AGCTCCTGGATTCATTTTTTTAAAA insertion Somatic Capillary sequencing 21024304 PD4109a 18 8275477 8275478 AAAAGACTTCAATGGTTCCAGGAAA CT - CTGTTGCGTTTAGAGCTTTATAGGT deletion homo_sapiens_core_58_37c PTPRM ENSG00000173482 CCDS11840.1 ENST00000332175 Somatic Roche 454 pyro-sequencing 20499876 PD4109a 7 152244419 152244419 GAAATCTCACCAGCAGCTAGGGACA T - TTAGGGTGAGGCACTGAGACACTGT deletion Somatic Roche 454 pyro-sequencing 21138843 PD4109a 9 114057225 114057226 CTTTGTCTGGTTAACATGAAAAAAA - A TAGACTCTATATTTATTGGAAAAAG insertion Somatic Capillary sequencing 20961261 PD4109a 3 15337604 15337605 TTTCCCCTAGGAGCAAAGCCTTGGT - TA TTGCTAATTCAGTGTCTGTGGCAAC insertion homo_sapiens_core_58_37c SH3BP5 ENSG00000131370 CCDS2625.2 ENST00000383791 Somatic Roche 454 pyro-sequencing 20690447 PD4109a 2 32835091 32835092 GTTTATTGTTGTTCTTTAAAATATA - A TTTTTGGTACACTCCCGTCCCATCT insertion homo_sapiens_core_58_37c BIRC6 ENSG00000115760 CCDS33175.2 ENST00000421745 Somatic Capillary sequencing 20457223 PD4109a 20 33552314 33552314 TAGATGTGGGAGAGGACGGTTGTCA C - CTTGAAACTAGTGATGGGAGCTTCT deletion Somatic Capillary sequencing 20713489 PD4109a 8 61118656 61118657 ACACATTTCAAGATAAAAGTATTCA - A AAAAAATGAAATAAGAATTAGTCAC insertion homo_sapiens_core_58_37c CA8 ENSG00000178538 CCDS6174.1 ENST00000317995 Somatic Capillary sequencing 20719013 PD4109a 8 108944228 108944229 CCATAATAGAATAAATGCAATGTAT - T TTTTTTTAAAAGACTATCTCCAAAA insertion homo_sapiens_core_58_37c RSPO2 ENSG00000147655 CCDS6307.1 ENST00000276659 Somatic Capillary sequencing 20912233 PD4109a 1 85121308 85121309 AATAAATGCTTATAGCGTTTTTTTT - T TTAAGTTCAATTCTCAAATCTGGTA insertion homo_sapiens_core_58_37c SSX2IP ENSG00000117155 CCDS699.1 ENST00000342203 Somatic Capillary sequencing 21143640 PD4109a 12 47068180 47068180 AAGTCTTCATGATGCAACAGATCTA T - TTTTTTTGGCACACGAATAAGAAAC deletion Somatic Capillary sequencing 20676363 PD4109a 2 22849233 22849233 GGGTATCTTGATTTACTCAAAATAC T - TTTTATTTAGCCATTTTAATGCATT deletion Somatic Capillary sequencing 21260801 PD4109a X 106500527 106500530 CAATAGCTTTGAAGATCAGTGGACC TCAA - TCAAAGTAAAAACAAGAAGCTGGGA deletion Somatic Roche 454 pyro-sequencing 20690621 PD4109a 2 34147599 34147600 ATTTAAAGTGTAAAATTAATTGTAT - T TTTTTTAGCACGTTCACAGGGTTGC insertion Somatic Capillary sequencing 21007799 PD4109a 15 76902733 76902733 CAAGATTAGGAATAAGGCAAGGATG C - CTACTATCACCACTGCTATTGAGCA deletion homo_sapiens_core_58_37c SCAPER ENSG00000140386 ENST00000303521 Somatic Roche 454 pyro-sequencing 20645129 PD4109a 17 14133103 14133103 TTAAAGAGAATTGGACTTGGATGAC A - AAAAAAACACCCTTTAAGTGTTTCT deletion Somatic Capillary sequencing 20834058 PD4109a 11 73158252 73158253 ATTAGGTGTTCCTTCTGGTTATTAT - ATA CCTTAACTAGTTTTTCTTATATTCC insertion homo_sapiens_core_58_37c FAM168A ENSG00000054965 CCDS41689.1 ENST00000356467 Somatic Capillary sequencing 21073480 PD4109a 14 62590330 62590330 GTTTTGATTTAAATGTTGTGGGGGG A - AAAATGAAAGCCAAACTAAAATTAG deletion homo_sapiens_core_58_37c ENSG00000186369 ENSG00000186369 ENST00000334389 Somatic Capillary sequencing 20603680 PD4109a 11 12330738 12330739 ATCTCTTCTTTGTCTTAGGAAACTT - A AATTCTTCTCTTCTAGCTATTTTGA insertion homo_sapiens_core_58_37c MICALCL ENSG00000133808 CCDS41620.1 ENST00000256186 Somatic Capillary sequencing 21244118 PD4109a 4 110811155 110811156 AAGGGTCAGTAAATGTGAATTACCC - C AGCTATGTGGCGTGTTGGAAAAAAT insertion Somatic Capillary sequencing 21174728 PD4109a 3 134441967 134441969 GCTGGCTTCACTCATCTGTCATCTG TTC - TTCTTCAGAGGTATGGTAGAATGAA deletion homo_sapiens_core_58_37c EPHB1 ENSG00000154928 ENST00000460895 Somatic Capillary sequencing 21042614 PD4109a 5 19253498 19253498 GTAGGTCAAGGATTTGTATCTTAGC T - TTAGGTAAGCTAAGCTCTAGATAAC deletion Somatic Roche 454 pyro-sequencing 21271930 PD4109a X 120276293 120276294 GAATTGATTGAAAATGAAAGTACAC - C CACAGTGTGGGAGCAGGCCCAAGCA insertion Somatic Roche 454 pyro-sequencing 20811256 PD4109a 16 17506088 17506088 TGGTGAGGTGCAGTTTGTTCTCACA G - CCACCGTGCAGCCCAGGTCCATGTG deletion homo_sapiens_core_58_37c XYLT1 ENSG00000103489 CCDS10569.1 ENST00000261381 Somatic Roche 454 pyro-sequencing 20972672 PD4109a 6 79065990 79065990 TGCCATATCTTGAAAAAGAAGCAGA T - TTTTTTTCTCCTCCTTCTCTTCCTT deletion Somatic Capillary sequencing 21127148 PD4109a 9 108710100 108710100 GGGTGTTTAGTGCTATAAATTTCCC T - CTTAACACTGCCTTAGCTGTTTCCC deletion Somatic Roche 454 pyro-sequencing 20880766 PD4109a 2 223100508 223100509 TGGTGATTCTTTAAAAGAAAAAAAA - A TCTCAGAATTTAAGAGTTCAATAGG insertion homo_sapiens_core_58_37c PAX3 ENSG00000135903 CCDS42826.1 ENST00000350526 Somatic Capillary sequencing 21129349 PD4109a 9 123432296 123432299 TTTCCTGAAGTCATAAAAAAGGTAG AAGA - AAGAGAGAAGTCTAGTCTAGATTAT deletion homo_sapiens_core_58_37c MEGF9 ENSG00000106780 CCDS48010.1 ENST00000426959 Somatic Capillary sequencing 20845363 PD4109a 2 118746838 118746838 CTTCATAGGTCTCTGACCACAGACT C - CCCCCTGTGTGATGCTGAGCAACAT deletion homo_sapiens_core_58_37c CCDC93 ENSG00000125633 CCDS2121.2 ENST00000376300 Somatic Capillary sequencing 21197036 PD4109a 3 192773322 192773323 CAAAAACAAAACAAAACAAAAAAAA - A ATGCATGGAGGCTAGTATATGCTAC insertion Somatic Capillary sequencing 20770063 PD4109a 16 51436581 51436581 CTGGCTGTTTTGCATCTGAGTGTGG A - AAAAAAATATGTTTTTGAACTTGGC deletion Somatic Capillary sequencing 20982492 PD4109a 6 152747337 152747337 ACTCCAATAGATAGGTAATAATAAT A - AAAAAATATTAAGTGAAATGATAGG deletion homo_sapiens_core_58_37c SYNE1 ENSG00000131018 CCDS5236.1 ENST00000265368 Somatic Capillary sequencing 20507811 PD4109a 7 105446858 105446859 CAGCCTCCAAAATTGTGAGAAATAA - AA CTCAGTTGTTTAAGCCACCCAGGCT insertion homo_sapiens_core_58_37c ATXN7L1 ENSG00000146776 CCDS47682.1 ENST00000297416 Somatic Roche 454 pyro-sequencing 20546381 PD4109a 7 18062778 18062779 AGTAGTCTCATCCCCACTTCGGAGA CT - CTGAGTAGACCGCAGAAGTGGTTGC deletion Somatic Roche 454 pyro-sequencing 20824668 PD4109a 11 88435731 88435757 TGTAGTTGACAGTAATATGAAAGAT ATTTTAGGGCCATTTCATATGATCACA - ATCATATGATCCATTGAAGACTCAT deletion homo_sapiens_core_58_37c GRM5 ENSG00000168959 CCDS44694.1 ENST00000418177 Somatic Capillary sequencing 21187249 PD4109a 3 114642722 114642723 TCACACAACTCAATGGCAAAAAAAA - A AATAACAATAACTCAATTTAAAAAT insertion homo_sapiens_core_58_37c ZBTB20 ENSG00000181722 CCDS2981.1 ENST00000462705 Somatic Capillary sequencing 21034948 PD4109a 21 18435889 18435890 AATTCCCTGCTCAAATCACCTCAGC - T TTTTTTTGTATTTCTTCTTTTCTTT insertion Somatic Capillary sequencing 20810708 PD4109a 16 13668654 13668654 GTAGGAAAATATCACCCATAATGAG A - AAAAAAAATTCAATAAAAGAGAACC deletion Somatic Capillary sequencing 20988905 PD4109a 6 85088546 85088547 ATACAGTTGGATCTTTCTTATTTTT - T TTTTTGACAGGGCCTCACTTTGTCA insertion Somatic Capillary sequencing 21242330 PD4109a 4 94257620 94257621 TACAACGAATATCTAGGTTATTTAG - T TTTTTCCCACTAAAACAAGCAATGC insertion homo_sapiens_core_58_37c GRID2 ENSG00000152208 CCDS3637.1 ENST00000282020 Somatic Capillary sequencing 21258549 PD4109a X 86593654 86593654 AATTCATTCTCAAAATCTGAGCATG C - CCTGTACAAAGAATTAGTTTACATA deletion Somatic Capillary sequencing 20472779 PD4109a 6 38407836 38407836 TTTCAGATTCCTATTAAACATTCAA G - TAAAAGTGTCAAGTAGGCCACTGAA deletion homo_sapiens_core_58_37c BTBD9 ENSG00000183826 CCDS47418.1 ENST00000481247 Somatic Capillary sequencing 21212728 PD4109a 4 48097243 48097244 CAATAAATGCACCTTCTTTAGACTG - A AAAAAAATCATTTATTGAATAAGTC insertion homo_sapiens_core_58_37c TXK ENSG00000074966 CCDS3480.1 ENST00000264316 c.502-5_502-4insT p.? Somatic Capillary sequencing 21070834 PD4109a 14 44448700 44448702 GAGCTGTAAGACACAGACTCTATCT AAG - AAGGAGTACTTAGGGAAGCATAAAG deletion Somatic Capillary sequencing 20737320 PD4109a 1 153056216 153056216 GCCATGGGCCTCTGGAATTCCAGCA G - GAGAAGACCCCCTCAACCACCAGGG deletion homo_sapiens_core_58_37c SPRR2B ENSG00000196805 CCDS30865.1 ENST00000441921 Somatic Roche 454 pyro-sequencing 21229089 PD4109a 4 157489699 157489700 GCTTTTACACAATATGTAACTTAAA CT - AGATGTTAACAAAGTATTATACTTT deletion Somatic Capillary sequencing 20712251 PD4109a 8 49047513 49047514 TACCTAGTTCCTGAAGATTTTCTCC - T TTTTTTTATCTAAAAGTTTTGTAGT insertion Somatic Capillary sequencing 21115667 PD4109a 13 77248466 77248467 TGCCAGAAACCATATAAGAAAAAAA - A GTTAAATAAGCACAAATCCCCACCA insertion Somatic Capillary sequencing 21066445 PD4109a 10 37408771 37408772 TGAAACTCTATCTCTACTAAAAATA - A AAAAATAGCTGGTCATTGTGGTGGG insertion Somatic Capillary sequencing 21019568 PD4109a 15 77293245 77293246 TAAATTGTAGCGAAATACACATAAA - A GTACCATCTTAACCATTTTTGTGGT insertion homo_sapiens_core_58_37c PSTPIP1 ENSG00000140368 CCDS45312.1 ENST00000379595 Somatic Capillary sequencing 20829798 PD4109a 11 123181721 123181721 TTACTTCATCATTATATTAAAAAAA T - TTTTTTTAAATATTATTTGCAGAGA deletion Somatic Capillary sequencing 21041104 PD4109a 5 9486759 9486759 CATCGATGGGAGGAAATACTCACAT A - AAAAAAAAGAAGAAACAGAAATAGA deletion homo_sapiens_core_58_37c SEMA5A ENSG00000112902 CCDS3875.1 ENST00000382496 Somatic Capillary sequencing 21259871 PD4109a X 97477929 97477931 TTTTTCTGGAATTTGAATAACAGAA ATT - ATTGAGTTTGGTAAACTGCATGGAA deletion Somatic Roche 454 pyro-sequencing 21243328 PD4109a 4 103692926 103692927 AACAAAACCAAATGCTGGTTTTTTT - T AAAGATCAGTAAAATTGATAAGCCT insertion Somatic Capillary sequencing 20539702 PD4109a 18 50505389 50505390 TTGCAATTGTGAATTGTGCTGTAAT - T CATGCAGGTACCTTTTTGATAGGAC insertion homo_sapiens_core_58_37c DCC ENSG00000187323 CCDS11952.1 ENST00000442544 Somatic Roche 454 pyro-sequencing 21109006 PD4109a 13 26724999 26725000 GAAATCGTAAGAAAAATCATCAAAG - T AAGAGAGTTATATATTTTCCTGTTG insertion Somatic Roche 454 pyro-sequencing 20601857 PD4109a 11 40164009 40164027 AGGTAACAATTAGTGTGTGTAGAGA GGCAAAGAAAAGGTGGGAG A GTGAAAACATGTTTATTGCTAAATC complex Somatic Roche 454 pyro-sequencing 21144700 PD4109a 12 54006020 54006039 AGTGATCCTCCTGCCTTGACCTCCT AAAGTGCTGGAATTACAGGC - ATGAGCCACCGTGCCTGGCAGCTGC deletion homo_sapiens_core_58_37c ATF7 ENSG00000170653 CCDS44905.1 ENST00000328463 Somatic Capillary sequencing 21097472 PD4109a 13 51893505 51893505 GCCAAGTGCTTTCTAGGAGTCATCT C - CCCTGAGCGTCACAGCAACCTTAAG deletion Somatic Roche 454 pyro-sequencing 20654056 PD4109a X 42902808 42902808 AGATTTACATAGCTCTATTCAATCA T - TTTTTTTTAGAGAATTTAGCTGTCT deletion Somatic Capillary sequencing 20509421 PD4109a 7 120365607 120365608 ATCGGTACAGGCAATTTACTGGAAA - A CTTTTCTCGCTCTCAGCTTGTGAAA insertion homo_sapiens_core_58_37c KCND2 ENSG00000184408 CCDS5776.1 ENST00000331113 Somatic Roche 454 pyro-sequencing 20881329 PD4109a 2 227631831 227631832 CAGGTTTTGCATGTCACCAGAAAAA - A GCCTGATATGTAGGTGTTAGAGCAG insertion homo_sapiens_core_58_37c IRS1 ENSG00000169047 CCDS2463.1 ENST00000305123 Somatic Roche 454 pyro-sequencing 20744827 PD4109a 1 200176517 200176519 AAAAAATTGTTAAAAAGTAAAAAAA AAG - AAAAATGTGTATTAAGTTTTTAAAC deletion Somatic Capillary sequencing 20857451 PD4109a 2 201546312 201546312 TCCAAGGGATCAGGCCAAAAGGCTC A - AAAAAATTTATTGATTGATCTTTAT deletion Somatic Capillary sequencing 20543231 PD4109a 18 75435690 75435691 CGAAATGAAATGCTTCAGAAAAAAA - A TTTAAAAACCACATGTTCTCACTTC insertion Somatic Capillary sequencing 20853761 PD4109a 2 175787452 175787452 TTCATTCATTCACTCATACATACAT A - AAAAAAAAGAAATATTTTAAATATA deletion homo_sapiens_core_58_37c CHN1 ENSG00000128656 CCDS46455.1 ENST00000409900 Somatic Capillary sequencing 20956914 PD4109a 3 79670258 79670258 TACACCCTTCATCCCAGCCTCTCTT C - CCTTTCACTTGGACTGACCCTGATA deletion homo_sapiens_core_58_37c ROBO1 ENSG00000169855 ENST00000464233 Somatic Capillary sequencing 21238280 PD4109a 4 62531154 62531155 AAACAAAAACGAAAACAAAAACAAA - A AAAAAAAACATGGTAGAGCTTTACT insertion homo_sapiens_core_58_37c LPHN3 ENSG00000150471 ENST00000512091 Somatic Capillary sequencing 20624634 PD4109a 20 16419357 16419357 TCTCCTCCTTTGGTCCATAAAACCC A - AGCAAGCTATGATGAAAAGATGTTA deletion homo_sapiens_core_58_37c KIF16B ENSG00000089177 CCDS13122.1 ENST00000354981 Somatic Capillary sequencing 20718476 PD4109a 8 104686720 104686721 TCTTTTTATTTTTAACTGTTTTTTT - T TATCTATATCTTTTTTATTTTTTTA insertion homo_sapiens_core_58_37c RIMS2 ENSG00000176406 ENST00000504942 Somatic Capillary sequencing 21193317 PD4109a 3 163034741 163034742 GTCTGTTCAGTCTACATATTATTTT - T TTGCTGTGCAACATTTGAGTTTAAT insertion Somatic Capillary sequencing 20827175 PD4109a 11 104930318 104930318 ATTTTATAGGAGTTCCCCAATCATA T - TTTTTTAATTCACAGAAATGAGTAA deletion homo_sapiens_core_58_37c CASP1 ENSG00000137752 ENST00000415981 Somatic Capillary sequencing 20581338 PD4109a 5 76988260 76988261 CACATACAAATATATCATCCAAATA - ATT TTATTATTATTATTATTATTTTGGT insertion homo_sapiens_core_58_37c TBCA ENSG00000171530 CCDS4040.1 ENST00000380377 Somatic Capillary sequencing 20994771 PD4109a 6 134783064 134783065 TATGTTTTCTGCATAGTTGTTTTGT - A AAAAAAAATTGTGTAGGAGCTATAA insertion Somatic Capillary sequencing 20748623 PD4109a 1 224568327 224568328 AACAGCAGAGAAAAAAAATAAACTT AC - AGTCATTCTTCTTTTATCCATTACC deletion Somatic Roche 454 pyro-sequencing 20564270 PD4109a 5 76676087 76676090 AAATCACTTCCTGTTTCATTGCAAA TGTG - TGTAAGAATATGAACAATCTTTTTG deletion homo_sapiens_core_58_37c PDE8B ENSG00000113231 CCDS4037.1 ENST00000264917 Somatic Roche 454 pyro-sequencing 21159596 PD4109a 12 59224563 59224564 ACATCACCACCTCCTCTGTGTCTGT - T TTTTTTGTGTGTCTCTTTTATGGAC insertion Somatic Capillary sequencing 20987595 PD4109a 6 74522017 74522018 AGGTATGTAACGATGCTTATTTTTT - T AGTTAAATATGACTTTTTATAATAA insertion homo_sapiens_core_58_37c CD109 ENSG00000156535 CCDS4982.1 ENST00000287097 Somatic Capillary sequencing 20517324 PD4109a 12 13290002 13290005 GCATTTTTTTCCATAAAATGCCAGA GAGT - GAGTATTTTAGGCTTTGCAGGACAG deletion Somatic Capillary sequencing 20977416 PD4109a 6 113459464 113459465 AATAATTCTCAAATAAATAAATAAT AA - AGAGAAGCAGGAAGAATGATAGAAA deletion Somatic Capillary sequencing 21256452 PD4109a X 67460541 67460541 TTGGCTTTGTTAATTACCTCTACCA T - TTTTTATTGTTATAGTTGTTTTTTA deletion homo_sapiens_core_58_37c OPHN1 ENSG00000079482 CCDS14388.1 ENST00000355520 Somatic Capillary sequencing 20914486 PD4109a 1 102004775 102004776 ACATTTATGAATAATTCCCAAGGAC - T TTTTTTAGAGGAAGAAGGGATTTTT insertion Somatic Capillary sequencing 20586322 PD4109a 5 121644850 121644851 AAGTCAAATCTACACTTTAAAAATA - A AAAAATAAGGAACATTTTTTTCTAT insertion Somatic Capillary sequencing 20824972 PD4109a 11 90698000 90698000 CAAGAAATTAATAGATAAATGAAAC A - AAAATGGTTCTTTGAATATATCAGT deletion Somatic Capillary sequencing 20698216 PD4109a 8 55391628 55391628 CTGTAATCCCAGCTATTTGAGATGC T - GAGGCTGGAGAATCGCTTGAACCTA deletion Somatic Roche 454 pyro-sequencing 21228714 PD4109a 4 154951731 154951731 TCACTACCTTAGATAAGACATGATG A - AAAAAAAATCAAGAAAGAAAAGTCC deletion Somatic Capillary sequencing 20542787 PD4109a 18 72392196 72392197 ACCTCGTGTCTACAAAAAAGAAAAA - A CAAAAAACAAAAACAAAATTAGCCA insertion homo_sapiens_core_58_37c ZNF407 ENSG00000215421 CCDS45885.1 ENST00000299687 Somatic Capillary sequencing 20564131 PD4109a 5 75886888 75886888 AGTGAGCTGTGACCCTGCCACTGCA C - TCCAGCCTGGGCAACAGACTGAGAC deletion homo_sapiens_core_58_37c IQGAP2 ENSG00000145703 CCDS34188.1 ENST00000274364 Somatic Roche 454 pyro-sequencing 20889051 PD4109a 1 38914005 38914005 TGCCATTTGTCACCCAGCAGATAGT A - AAAAAAAATGCAAAATATTTATATT deletion Somatic Capillary sequencing 20857918 PD4109a 2 204154039 204154041 ACTTTTAAAGAGGTTTTATACATGA AAG - ATATATTTACTGAAAATATTTTTCC deletion homo_sapiens_core_58_37c CYP20A1 ENSG00000119004 CCDS2357.1 ENST00000356079 Somatic Capillary sequencing 20478159 PD4109a 6 8434515 8434516 AGGACAAAAGTCCCACACCAAAAAA - A GTAGAATATGAAAAAAAAGTCATTA insertion homo_sapiens_core_58_37c SLC35B3 ENSG00000124786 CCDS4508.1 ENST00000379660 Somatic Capillary sequencing 21125933 PD4109a 9 99552399 99552400 GTGCTGCAATGAACACCTGCGTGCA TG - TGTCTTTATGATGGAATGATTTATA deletion Somatic Roche 454 pyro-sequencing 21049956 PD4109a 5 21853246 21853247 ATATATATAAGATTTTTTTCACAGC - A AAAAAAATCACAAAACTTCCTTTTA insertion homo_sapiens_core_58_37c CDH12 ENSG00000154162 CCDS3890.1 ENST00000382254 Somatic Capillary sequencing 21098260 PD4109a 13 57811353 57811354 AGAAACTTACAATTGGAAAACAAAC AT - ATTTAATAGCTATACTATTTGTTTT deletion Somatic Roche 454 pyro-sequencing 20509326 PD4109a 7 119083248 119083249 CTCCTTCCACCCATCTAAGGGTAGG - A AAAAAAAACAAGGCTGACTCTCTGA insertion Somatic Capillary sequencing 20556818 PD4109a 7 29601311 29601312 AATGAGAAAGGGCATGCAAAATAAT - A TTTTTTTTTGTTAATTTCAGCAGTT insertion Somatic Capillary sequencing 20519635 PD4109a 12 27062741 27062741 GAAACTAGTGAACTGAAGAATATAA C - ATGTATCACTATATACATACACTAT deletion homo_sapiens_core_58_37c C12orf11 ENSG00000064102 CCDS8708.1 ENST00000261191 Somatic Roche 454 pyro-sequencing 20877446 PD4109a 2 198602947 198602948 TGACATTATGTGGTTTTGCTTTTTT - T ACTTTAAAACTTAATTCTCTTTTAT insertion homo_sapiens_core_58_37c BOLL ENSG00000152430 CCDS2324.1 ENST00000321801 Somatic Capillary sequencing 20698190 PD4109a 8 55224103 55224103 GGTCATATAGGTGCTTATTTAACTT A - AAAAAAAATCAAATGGTATTCAAAA deletion Somatic Capillary sequencing 20573602 PD4109a 5 152559220 152559220 ATAAATTTATAATTATAGTTGATGA T - TTTAATACCCTTTTCCAATAACTGA deletion Somatic Capillary sequencing 21211009 PD4109a 4 36174627 36174628 CACCAGGGAACATTATGTTGGGGGG - G ATGAGGGAGGATGAGTCTCTTGTTA insertion homo_sapiens_core_58_37c ARAP2 ENSG00000047365 CCDS3441.1 ENST00000303965 Somatic Capillary sequencing 20836992 PD4109a 11 95940857 95940858 CTGTCCCTTAAAAATTGTCCAGGCA - TA ATATGCATGGCTGTGAGTAAACCAG insertion homo_sapiens_core_58_37c MAML2 ENSG00000184384 CCDS44714.1 ENST00000440572 Somatic Roche 454 pyro-sequencing 20844526 PD4109a 2 113494040 113494041 GTGAAGCAGATTAACATTATCATCT CA - GTTTTTTTGTGATAATAGCAGCTAA deletion homo_sapiens_core_58_37c NT5DC4 ENSG00000144130 ENST00000327581 Somatic Roche 454 pyro-sequencing 21153285 PD4109a 12 116392516 116392517 TAGGTTGACATGGAATAAGAATTTG GA - TATATTTGGTTAAATAAAATATATT deletion Somatic Roche 454 pyro-sequencing 20654977 PD4109a X 50866213 50866213 AATGTCTACTCTGGTCCTTTGCCCA T - TTTTTTTCAATTCAGATATTTGTTT deletion Somatic Capillary sequencing 20605111 PD4109a 11 22974365 22974366 TATATATTTTCAAAAGTAAAAAAAA - A TATCATGCTTTGACAAGGTTGTTTT insertion Somatic Capillary sequencing 20745667 PD4109a 1 205041395 205041411 GGGCTGAACAGAAATTAGGCAGCGA GCCTAATGGAAATAAGG - GAATGGAATTCATGGCCCCTGAAGC deletion homo_sapiens_core_58_37c CNTN2 ENSG00000184144 CCDS1449.1 ENST00000331830 Somatic Capillary sequencing 20521617 PD4109a 12 2200083 2200084 CTGGCTCTTGTTAATTTCTATTTTT - T ATAGCAGCCATCCTAATGGGTGTGA insertion homo_sapiens_core_58_37c CACNA1C ENSG00000151067 CCDS44794.1 ENST00000399655 Somatic Capillary sequencing 20950679 PD4109a 3 35992553 35992553 ATGTCTCAGAGATTCTGGTATGTTG T - ACCTTCGTTTTCATCAGTTTCAAAG deletion Somatic Roche 454 pyro-sequencing 21041068 PD4109a 5 9285924 9285924 TATAATGACCTTGACCCAAATGTTC T - GGTGATGGCTGCTTCATGGGGAGCA deletion homo_sapiens_core_58_37c SEMA5A ENSG00000112902 CCDS3875.1 ENST00000382496 Somatic Roche 454 pyro-sequencing 20624951 PD4109a 20 18279890 18279893 AAGAACAACATGGAAATATCAATAA ACAG - ACAGAAAACATAAAAATAAACCAAA deletion homo_sapiens_core_58_37c ZNF133 ENSG00000125846 CCDS13134.1 ENST00000377671 Somatic Roche 454 pyro-sequencing 20968608 PD4109a 3 77093285 77093286 CGCAACATGTGGACCATAAAAAAAA - A GATTTCTTAGAACATTAAGCAAAAA insertion homo_sapiens_core_58_37c ROBO2 ENSG00000185008 CCDS43109.1 ENST00000461745 Somatic Capillary sequencing 20870628 PD4109a 2 144200324 144200325 CAAGTGATCATGATCCTATTGTTTC - T TTTTTTTTGTATGTTTGAAAAGTTC insertion homo_sapiens_core_58_37c ARHGAP15 ENSG00000075884 CCDS2184.1 ENST00000295095 Somatic Capillary sequencing 20653578 PD4109a X 38536322 38536322 TGTTCATGAAAGCAGTACCCAAGTC T - TTTTTTTCCCCCCACTCAAGCTTCC deletion homo_sapiens_core_58_37c TSPAN7 ENSG00000156298 CCDS14248.1 ENST00000378482 Somatic Capillary sequencing 20893030 PD4109a 1 67268166 67268166 AACAAACAAACAAACAAACAAAAAC A - AAAAAAAACAGCTACTAATTATTAG deletion Somatic Capillary sequencing 20516348 PD4109a 12 8663288 8663291 CAGAAGTGTGGGTCCCTAGGGACTG TCAC - TCATCATTTCCCCATTGTGGGGAGC deletion Somatic Roche 454 pyro-sequencing 20710279 PD4109a 8 138582221 138582221 TTTTAACTTGTCTTGAAGACTTTGT A - AAAAATGAATCTTCCTGTTTTACAT deletion Somatic Roche 454 pyro-sequencing 20967422 PD4109a 3 70483001 70483002 TAAGATCTGTGTCTAGATTCTTGGG - T TTTTTTGGATGTAGATAGTTGATAG insertion Somatic Capillary sequencing 20705841 PD4109a 8 109126756 109126756 GTTCCTTGTTTTAACTTTTCTCATC T - TAATTTCTCCCTTATCCCCTAAACC deletion Somatic Roche 454 pyro-sequencing 20771489 PD4109a 16 60540377 60540378 ATTATTTTAATTTAATCAATAGAGC AA - AGAGATTTTAGGATGTGGGTAGCAT deletion Somatic Roche 454 pyro-sequencing 21029170 PD4109a 21 19788991 19788991 TTTGATAAATTCACAAACTATTTGC A - GCATATTGTAAAGAACTTTAAATTT deletion homo_sapiens_core_58_37c PRSS7 ENSG00000154646 ENST00000422787 Somatic Roche 454 pyro-sequencing 20891977 PD4109a 1 60620556 60620557 AAATAGAGTGTTGGAGCCATCAACA CT - CTCACTTTCCCTCCTCATCCTTGTC deletion Somatic Roche 454 pyro-sequencing 20851188 PD4109a 2 159838542 159838542 TTGCTAACTTAATTTGCTATTTACA T - TTTTTTTTCCCTTGATATCCTTCCA deletion homo_sapiens_core_58_37c TANC1 ENSG00000115183 CCDS42766.1 ENST00000263635 Somatic Capillary sequencing 21221165 PD4109a 4 102986863 102986863 GAGAATAAATAGGGAATCTCAGCAG A - AAAAAAAATGAAACTATATAAAAGA deletion homo_sapiens_core_58_37c BANK1 ENSG00000153064 CCDS34038.1 ENST00000322953 Somatic Capillary sequencing 20831099 PD4109a 11 132377813 132377813 AAAATCATACATATGGCTGAAAGGG A - AAAAATAATATGACTATTTTTGTAA deletion homo_sapiens_core_58_37c ENSG00000183715 ENSG00000183715 CCDS8492.1 ENST00000331898 Somatic Capillary sequencing 20947573 PD4109a 3 12872505 12872507 GAATCTAGGCCTGCAGCCATGTTTA GTT - GTTGTTAAAAGTTTTTGTTTGGTTT deletion homo_sapiens_core_58_37c CAND2 ENSG00000144712 CCDS43053.1 ENST00000295989 Somatic Roche 454 pyro-sequencing 20653122 PD4109a X 33101980 33101981 CAGACACCCCACAATGGAGTAACAG AC - AGAGACACCCCATGCTGGATCTACA deletion homo_sapiens_core_58_37c DMD ENSG00000198947 CCDS14233.1 ENST00000357033 Somatic Roche 454 pyro-sequencing 20466207 PD4109a 6 952621 952625 ATTCTTTGCATTCCTCCCAAGTGTG TTTAT - TTTATTTTTCCTTCTCTTCCACCAA deletion Somatic Capillary sequencing 20547518 PD4109a 7 25917507 25917507 TTCTCCTTTCTCCATCCCATCTCTC T - TTTTTTTTGTTTTTTTTTAATGAGG deletion Somatic Capillary sequencing 21233407 PD4109a 4 182170033 182170033 CTCTCGCTCACTCTCCTTTTTACAA T - TTTTTTTTGACTTTGGTTATGCATT deletion Somatic Capillary sequencing 20908714 PD4109a 1 56707510 56707511 ACCACTTTCATTAGCACTCCTAAAA - A GAAATACTTAGGTATAAATCTAATG insertion Somatic Capillary sequencing 20608392 PD4109a 11 46076803 46076804 GCAGCAAATTTTTAGTAATTTTTTT - T TCATTTCCAAAGCATTAAATTATGG insertion homo_sapiens_core_58_37c PHF21A ENSG00000135365 CCDS44578.1 ENST00000418153 Somatic Capillary sequencing 20710088 PD4109a 8 137487159 137487159 GAAACAGAAAAAAAGAGAAGAAAAT A - AAAAAAAAGGAGCCACAGACTAATG deletion Somatic Capillary sequencing 21172247 PD4109a 3 116800436 116800436 CCTTCTGGTCATCATTTCTTTCCTT A - AAAAATATTTAGAATCTGCTCACTG deletion homo_sapiens_core_58_37c LSAMP ENSG00000185565 ENST00000474851 Somatic Capillary sequencing 21229467 PD4109a 4 160053951 160053951 TGCGTTTTAAGTGTATATGATAATG T - TTTTTCTTTCTGGAATGTTTTTAGT deletion homo_sapiens_core_58_37c RAPGEF2 ENSG00000109756 ENST00000505478 Somatic Capillary sequencing 20707180 PD4109a 8 118976863 118976866 TGGGTTTTATGTCTGTGTGTGTGTG TGTT - TGTTTGTTTGTTTGTTTGTTTGTTT deletion homo_sapiens_core_58_37c EXT1 ENSG00000182197 CCDS6324.1 ENST00000378204 Somatic Capillary sequencing 21240217 PD4109a 4 76666499 76666500 TTGCAGGACCAGAAGTTGCTCTGGA - CCAG AGTCAAGTGAGTGAGTGGTGAATGA insertion Somatic Capillary sequencing 20717002 PD4109a 8 91795700 91795701 TTCATGATTACTTAGAAGTTTTTTT - T TTTTTGAAATGATCAGTATTGTTAA insertion Somatic Capillary sequencing 20531522 PD4109a 18 54790151 54790151 CCTTCCTCGGAGTGGGTCCTATCTT C - CTATCATCTTACACTTTTGACTTCT deletion Somatic Roche 454 pyro-sequencing 20520367 PD4109a 12 31499485 31499485 TTGGCGTTTTGGCAACTGCAATAAC A - AAAACCTGAAGCAAGAAGATTAAAA deletion Somatic Capillary sequencing 20737334 PD4109a 1 153185101 153185101 GATAGTTATTTGATGGGAATGGGAG A - AAAAAAAACTGTCTTGCACACACCT deletion Somatic Capillary sequencing 20820098 PD4109a 16 34427666 34427667 ATCTTTCCAGACTTTCTGTTGGCTT - T ACCCAAGTGAATCATAATGAAGGAG insertion Somatic Roche 454 pyro-sequencing 21193832 PD4109a 3 167208720 167208721 CTCTCCAAACTTTTCAATCTTATGT - T TTTTTTTCAACATTTAACTACAACT insertion homo_sapiens_core_58_37c WDR49 ENSG00000174776 CCDS3201.1 ENST00000308378 Somatic Capillary sequencing 20470849 PD4109a 6 29064268 29064272 TCCAAAATATGTAAGAAATGCAAAC AACTT - AAATTTGTTAGCAAGAAAACAAAGA deletion Somatic Roche 454 pyro-sequencing 20710056 PD4109a 8 137282304 137282304 AAAATAGATCTTGTCTATGAGTGCA T - TTTTTTTATAGCTCTCTGTCTGACC deletion Somatic Capillary sequencing 20764339 PD4109a 1 215655373 215655374 AAGAGGGAAAGTAAATTTAAAAAAA - A AAATACACACACATATCCCACACTG insertion Somatic Capillary sequencing 21119700 PD4109a 13 107746033 107746034 TGTAATCCATGTGTAGAACCCAGGG - A ACAAAAGGCTGACTTTATATTCATA insertion Somatic Roche 454 pyro-sequencing 20956804 PD4109a 3 78802976 78802976 GATCATTTTAAAATGTATCACCAAA G - TAAGTCAAATGGCTAAAATCATATG deletion homo_sapiens_core_58_37c ROBO1 ENSG00000169855 CCDS46872.1 ENST00000398414 Somatic Roche 454 pyro-sequencing 20526863 PD4109a 18 20253858 20253859 TAAATAAATAATTAAAAAGCAAGAA AG - AGAGAAGAAATAGAAAGAGGAAGAA deletion Somatic Roche 454 pyro-sequencing 20473358 PD4109a 6 42719952 42719954 TCCTTCTGCCTTTGCCCCTGGCGCT CTC - CTCTGCCTCAACGCCCTTGACCTTC deletion homo_sapiens_core_58_37c KIAA0240 ENSG00000112624 CCDS34451.1 ENST00000394167 Somatic Roche 454 pyro-sequencing 20906652 PD4109a 1 37551471 37551472 TTAATCTCTGAACGTTTCCACCACC - A AAAAAAAATATATTATGCCCATGTG insertion Somatic Capillary sequencing 21248566 PD4109a 4 143361693 143361694 TTTTTATCCTGTCAATGAAATTTTT - T ATATGAAATATAATGGCTTATATGT insertion homo_sapiens_core_58_37c INPP4B ENSG00000109452 CCDS47112.1 ENST00000513000 Somatic Capillary sequencing 21076160 PD4109a 14 80442996 80442996 TTAATAGCTAGTATGAGAGAAAAAA G - TTCTTCCTTTATTATAATTAGAGCA deletion Somatic Capillary sequencing 21048822 PD4109a 5 14479910 14479911 TAGCAAAGCTCTAGTTAGTCTAGTG - T TTTTTTCCTCGTTACTTTTACTGCC insertion homo_sapiens_core_58_37c TRIO ENSG00000038382 CCDS3883.1 ENST00000344204 Somatic Capillary sequencing 20673501 PD4109a 2 2078318 2078318 TTAAATGAAGACCATTTGGGGGATT A - AAAAAATACCAGTGAAGGCTTGAAG deletion homo_sapiens_core_58_37c MYT1L ENSG00000186487 CCDS46222.1 ENST00000428368 Somatic Capillary sequencing 20598739 PD4109a 11 34499329 34499329 AATTTCTTGAGTAGCAAGAAGAACG A - ATGTTTTTGTTCTCTGAACTGCTTG deletion Somatic Capillary sequencing 21252494 PD4109a 4 173353936 173353937 ACAAGTAAATTTGACTTAAAAAAAA - A CTGAACATTCTGACTGAAAACAAAA insertion homo_sapiens_core_58_37c GALNTL6 ENSG00000174473 CCDS34104.1 ENST00000404275 Somatic Capillary sequencing 21135249 PD4109a 9 82864198 82864199 TGAATTTGTAGTTAAATGTTGGTTA - T TTTTTTTATAAATTTGTAGGTTTTT insertion Somatic Capillary sequencing 20879783 PD4109a 2 216006742 216006743 AATCTTGTGAGGCTAAGAAAAAAAA - A TGATGCCTGTAAAATTTAGAAATTT insertion Somatic Capillary sequencing 20512305 PD4109a 7 141118207 141118208 TAGTAGGGGCCACGCAGGAAAAAAA - A ATGCTGTAGTAGAAACCATGCTTCC insertion Somatic Capillary sequencing 21135600 PD4109a 9 86148910 86148911 GTGAATAACAATGCCGGTGTCTAAA - A AAAAAAAGTAGATAGAAGATGGCTA insertion homo_sapiens_core_58_37c FRMD3 ENSG00000172159 CCDS43840.1 ENST00000304195 Somatic Capillary sequencing 21137260 PD4109a 9 101885291 101885292 TAAATTACCTTCAGACTATATATAT - TA AGCATATATGAAACATGAATGAATT insertion homo_sapiens_core_58_37c TGFBR1 ENSG00000106799 CCDS6738.1 ENST00000374994 Somatic Capillary sequencing 20530127 PD4109a 18 44695067 44695067 TTATGATTATGCTGCTATGAACATT C - TCATACATGTCTTTTGGTGCACATA deletion homo_sapiens_core_58_37c IER3IP1 ENSG00000134049 CCDS11933.1 ENST00000256433 Somatic Roche 454 pyro-sequencing 20573768 PD4109a 5 153800166 153800167 TCCTTATTGCTTTCAACGGACACTC TT - TGTGAAAAATCCAAGTAATATTTTA deletion homo_sapiens_core_58_37c GALNT10 ENSG00000164574 CCDS4325.1 ENST00000297107 c.? p.? Somatic Capillary sequencing 21128382 PD4109a 9 116784137 116784140 AGTATATATTTTTGAAGGGAGAGGT CTGG - CTTCTTTCACTCTGCATAATTATTT deletion homo_sapiens_core_58_37c ZNF618 ENSG00000157657 CCDS48008.1 ENST00000288466 Somatic Roche 454 pyro-sequencing 21050642 PD4109a 5 26577681 26577682 GGCAATAATAAAATGAATTACAAAA - A ACACTTTAACACTTTATATTCATAG insertion Somatic Capillary sequencing 21248426 PD4109a 4 142085388 142085389 TAAAGATCAATTTAATGAAAAAAAA - A ATGAAGACAAGATTAGAGAAAAAAG insertion homo_sapiens_core_58_37c RNF150 ENSG00000170153 ENST00000420921 Somatic Capillary sequencing 21258170 PD4109a X 83612620 83612620 GATCAATGAGGAAATCTTAAAGAGA T - TTTTTTTTAAGCTTTGCATTTCACA deletion homo_sapiens_core_58_37c HDX ENSG00000165259 CCDS35342.1 ENST00000297977 Somatic Capillary sequencing 21073441 PD4109a 14 62307527 62307527 GTAGAGCTCATAAATATAGGCTATT C - CATCAATAAATTTGTGGGAGAAAAT deletion Somatic Roche 454 pyro-sequencing 20894786 PD4109a 1 79621209 79621212 TGCCCTGTTTTTTTGGTGTTTTTCC TTTG - TTTGTTTGTTTTACTATCCACATTT deletion Somatic Roche 454 pyro-sequencing 20588594 PD4109a 5 143981961 143981962 GTTATCTGTGCTGTTTTTATTATTA - T TTTTTTGGTTAGAATCTAAGAAGCA insertion Somatic Capillary sequencing 20535172 PD4109a 18 76555409 76555409 ACCCAGAGATACTAAAATCAGTGAG C - AAAAGTTTAAATATAATAGAATATT deletion Somatic Capillary sequencing 20955055 PD4109a 3 69362432 69362432 ACCAAGTTTTCTGACTTCGAAGATG T - TTTTTTCCCCTTGATCAATTCTGAG deletion homo_sapiens_core_58_37c FRMD4B ENSG00000114541 CCDS46863.1 ENST00000398540 Somatic Capillary sequencing 21101279 PD4109a 13 77973378 77973379 AATAGCGTTGAAGTAGGAGGCAAAA CT - CAACTCTGGAGGTGGGGCTTGGACA deletion Somatic Capillary sequencing 21247300 PD4109a 4 134059564 134059565 AATCTTATTTTAATTCTAGGAAAAA - A ATAATTAATCAGATAAGAACCATTA insertion Somatic Capillary sequencing 20846190 PD4109a 2 125201217 125201220 AGTTACATAAAAAATAAAATCAGTT TGAC - TGATTCATAATATTTATAAAATTTA deletion homo_sapiens_core_58_37c CNTNAP5 ENSG00000155052 CCDS46401.1 ENST00000431078 Somatic Roche 454 pyro-sequencing 20547484 PD4109a 7 25516527 25516527 TTTATTATTCAAGATTGGCTCAGTA T - TTTTCCCCCCAAAGGCATTTGAGTG deletion Somatic Capillary sequencing 20732475 PD4109a 22 36550319 36550320 AAATGAGGGGGAGGCTTAGAATCTT - A TTTTGGTTTATACCGCTTATATTCA insertion homo_sapiens_core_58_37c APOL3 ENSG00000128284 CCDS13924.1 ENST00000424878 Somatic Roche 454 pyro-sequencing 20714744 PD4109a 8 72915236 72915237 GTCAGCCAAGAAAGCTAATTTTTTT - T ATTTTTATTTCTGGCAAAATACAAT insertion homo_sapiens_core_58_37c AC016057.1 ENSG00000235531 ENST00000457356 Somatic Capillary sequencing 21265313 PD4109a X 145964853 145964853 CTCTGACCCGATCTCCTAGGATACA T - TCTCACTTACACTATTCCGTACACA deletion Somatic Capillary sequencing 20769527 PD4109a 16 46635779 46635782 ACCTAAATGAATGGATTTTCAAAAC AAGA - AAGAAAAACCCTATTGTAAGTACTA deletion homo_sapiens_core_58_37c SHCBP1 ENSG00000171241 CCDS10720.1 ENST00000303383 Somatic Roche 454 pyro-sequencing 20887923 PD4109a 1 30649439 30649439 TAAATATCCTGGATGTTGAATCTGA T - TTTTTTTTAAGTACTTGAATTTAAT deletion Somatic Capillary sequencing 20766394 PD4109a 1 231996083 231996084 GGACAAGAACTGTTTTAGATCTAGG - T TTTTTTTTGAATATTTGCTTATTTA insertion homo_sapiens_core_58_37c DISC1 ENSG00000162946 CCDS31055.1 ENST00000366636 Somatic Capillary sequencing 20995501 PD4109a 6 141660127 141660128 AAGCCTAAAGTTAGTAGAAGGAAAG - A AAAAAAAAGATTAGAACAGAAATAA insertion Somatic Capillary sequencing 21135002 PD4109a 9 80081113 80081114 AGGTTTTCAGCCATTATGACAGAAT - T TTTTTTCTATTCCTTTCTCTGGTCT insertion homo_sapiens_core_58_37c GNA14 ENSG00000156049 CCDS6657.1 ENST00000341700 Somatic Capillary sequencing 20636674 PD4109a 9 34893014 34893047 AAGAGGAGCCCTGTGATGGCCCCAG TGAAGTCAGGGAGATCTGGTTGTTCTCACCTGCC GGAGATCTGGTTGTTCTCACCTGG AGCAATTGCTTAATCTCCAGAGCCA complex Somatic Roche 454 pyro-sequencing 21261870 PD4109a X 116733390 116733410 AATAATTCTTAGATTTGACCTTTTG AGGCTATTTTCTAGATCCTAT - AGGCATGCTACATTTTTTTTATTTT deletion Somatic Roche 454 pyro-sequencing 20524853 PD4109a 12 23150353 23150354 GTGTTTAGCTGTTCTAAATTTTTTT - T TATATTAACCCACTTAGTCCTTATA insertion Somatic Capillary sequencing 21261989 PD4109a X 117880558 117880560 GTTTATACCTTTAAAATGTGGGAAA TTG - TTGTATCTACACCAGGGTTTCTCAA deletion homo_sapiens_core_58_37c IL13RA1 ENSG00000131724 CCDS14573.1 ENST00000371666 Somatic Roche 454 pyro-sequencing 20924537 PD4109a 10 91860827 91860827 AATTTTAATGTTCAGTGAAGGACTT A - AAAAAAAATACAAGCAAAACAAACA deletion Somatic Capillary sequencing 20467439 PD4109a 6 8488790 8488793 TGCAAGGAAGAAATAATGGAAACAT AGTC - AGAGATTTTAACCTTTCCTACTCTA deletion homo_sapiens_core_58_37c AL135912.1 ENSG00000247276 ENST00000498984 Somatic Roche 454 pyro-sequencing 21260766 PD4109a X 105787470 105787472 AATAGTCTTCTCGTCAAATGGTGTC AGG - AGAACTAGGTATCCGTAAGAAAAGT deletion Somatic Roche 454 pyro-sequencing 20495261 PD4109a 7 123153393 123153396 GAAGAGAGAATTAGTAAACTGGAAG ATAA - ATAAAATGATTTTATATAGAATGAT deletion homo_sapiens_core_58_37c IQUB ENSG00000164675 CCDS5787.1 ENST00000466202 Somatic Roche 454 pyro-sequencing 20698611 PD4109a 8 58151000 58151000 GTGACCTAGGAAGTATTCTGTTGTG T - TTTTTATGTTTCTCAAATAAATCCC deletion Somatic Capillary sequencing 20544865 PD4109a 7 7888493 7888496 AATTTTTTCATATTTTACTGCCAAC TTTA - TTTAAACTACTTTCTCAATTTGCAA deletion homo_sapiens_core_58_37c ENSG00000219545 ENSG00000219545 ENST00000406829 Somatic Roche 454 pyro-sequencing 20876176 PD4109a 2 188504158 188504159 ATTTGTATATAAATTTAACATCTTA - T TTTTTTTGCTGTTTTACTCGTCTGA insertion Somatic Capillary sequencing 20697782 PD4109a 8 52362763 52362763 CATGCTAATGCATTATAATTAGCAT A - AAATGAGCAGTGAGAACAACCAGGG deletion homo_sapiens_core_58_37c PXDNL ENSG00000147485 CCDS47855.1 ENST00000356297 Somatic Roche 454 pyro-sequencing 20500536 PD4109a 7 156060351 156060390 TCATTTCAATGACTGAAAATGAGCA TATCAAAAATGTGTCACTTTTCCTTTCAGAATTTATTTTC - TTTATTGCTCAATAACGTTGGACTG deletion Somatic Roche 454 pyro-sequencing 21000425 PD4109a 15 26634597 26634597 CAGAGGAAAAACTCATAGAAATATG A - AAAAAAAATCCCACCTGTTCTTTAA deletion Somatic Capillary sequencing 20713176 PD4109a 8 57949509 57949510 ATTGTTTTAAATTGAACTGTTTTTT - T AAGTGCATTTCTTGCAGATAGCATA insertion Somatic Capillary sequencing 20827784 PD4109a 11 108859310 108859310 TTTTCTATCTGTTTGGAAGAGTGAG T - TTTTTTTAGACTAACAAAGAGAAAT deletion Somatic Capillary sequencing 20658938 PD4109a X 37659137 37659138 TTGTGCAGGGCTTCTGAAGAGGATT - T TTTTTTTTCCTTAGGCACAGTATAA insertion homo_sapiens_core_58_37c CYBB ENSG00000165168 CCDS14242.1 ENST00000378588 Somatic Capillary sequencing 20657995 PD4109a X 27004511 27004512 TGTATCAGCTACCAAATAAAACAAA - A AAAAAACAGTTCCTGGTGTCCATAT insertion Somatic Capillary sequencing 21106523 PD4109a 13 112542323 112542326 TGGGGCATTTTCCCATCTTAATACT ATTC - AGTCTCTTGTTCTGTAAACAGTGAA deletion Somatic Capillary sequencing 20588845 PD4109a 5 145967940 145967941 ATAAAATGATTCTTTCACTATTTTT - T CTCCTCCAAAGCAAATTACACTTGA insertion homo_sapiens_core_58_37c PPP2R2B ENSG00000156475 CCDS4284.1 ENST00000394413 c.? p.? Somatic Capillary sequencing 20503620 PD4109a 7 71023438 71023439 AAATCAGTTATAAGTGTTCATCTGT - A AAAAAAATCCTTAATTCTCTGGCCA insertion homo_sapiens_core_58_37c WBSCR17 ENSG00000185274 CCDS5540.1 ENST00000333538 Somatic Capillary sequencing 20675797 PD4109a 2 17995924 17995924 ACACCATGGAATACTACTCAGCCAT A - AAAAAAAGCCAATGAAATAATGTCT deletion Somatic Capillary sequencing 21164714 PD4109a 12 102815800 102815801 AAATAGAAAGTCATCATCATCACAG - A AAAAAAATAACAGGAAATACCAGGC insertion homo_sapiens_core_58_37c IGF1 ENSG00000017427 CCDS44961.1 ENST00000456098 Somatic Capillary sequencing 21259321 PD4109a X 92654097 92654099 TCTTTAAGGTTGACTCTGTGAAACT AAG - GAGATAAAGTATAAGTAAATGGCAT deletion Somatic Roche 454 pyro-sequencing 21270386 PD4109a X 101973116 101973117 ATGGATGAACCCAGTCTGCTTGAAA - A AGTAAAAGGAGTTTGATGAGAAATG insertion Somatic Roche 454 pyro-sequencing 20984378 PD4109a 6 165062324 165062324 TATTGACTTCCTCTGTGCCTTGTTT C - CCCAAACTCTAGCTTGGAATTCTTG deletion homo_sapiens_core_58_37c ENSG00000237744 ENSG00000237744 ENST00000425920 Somatic Capillary sequencing 20979969 PD4109a 6 132735907 132735907 GTTGACCTTAAATATGAATTTTTCA C - CATCGCTGGCAGATGAGCCTTTAAG deletion Somatic Roche 454 pyro-sequencing 20798292 PD4109a 19 28950491 28950491 AGTAAGACCCCATCTCTAAAAAAAA T - TTTTTTTTAATTAGCCAGATTGCTG deletion homo_sapiens_core_58_37c AC005307.1 ENSG00000250689 ENST00000511462 Somatic Capillary sequencing 20948831 PD4109a 3 22235642 22235643 TATTTTTAAGAGTTTTATAATCTCT TA - TGTTTAGTACATAACAACTATCAGA deletion Somatic Roche 454 pyro-sequencing 20878422 PD4109a 2 206293515 206293516 AGAAATATTAGTATAAACATATGGG - T TTTTTTCCCCCAGAAATATGTATTT insertion homo_sapiens_core_58_37c PARD3B ENSG00000116117 CCDS42806.1 ENST00000358768 Somatic Capillary sequencing 20799682 PD4109a 19 37187146 37187146 CACTACTCTTTCTTGTTTCAGTCAG A - ACATTTATCTTCGTATCTGGACCTC deletion homo_sapiens_core_58_37c ZNF567 ENSG00000189042 CCDS12495.1 ENST00000360729 Somatic Capillary sequencing 20548788 PD4109a 7 35069641 35069641 ACCTTTAAGTTCTACATTTTTATAA C - ATTCCCATGGATATGAAAGATGAGA deletion homo_sapiens_core_58_37c DPY19L1 ENSG00000173852 CCDS43567.1 ENST00000310974 Somatic Roche 454 pyro-sequencing 21273516 PD4109a X 137724781 137724782 TCTTTTTCACTATGGAATCAATTTA - A AAAAAAAGGCCTGGCTATATGTGTT insertion homo_sapiens_core_58_37c FGF13 ENSG00000129682 CCDS14665.1 ENST00000315930 Somatic Capillary sequencing 20800079 PD4109a 19 39933531 39933531 GCATTGTCTGTATAGGTTGGTTTTG C - TTGCTCTGGAGTTTCATATGAATGG deletion Somatic Capillary sequencing 20857162 PD4109a 2 199634142 199634145 AATAGAAGATGAAAGCTCAGGATAA AGAG - AGAGAACAGTCATTCAAAGAGAGAC deletion Somatic Roche 454 pyro-sequencing 20501906 PD4109a 7 158473720 158473746 CAGTCAATCACAAGAAAGAATCTAC GGCTGAAATAAAAAGATTAATGGCCTT A GGGCTATAAAATGGTTTGGGTTCTA complex Somatic Capillary sequencing 20988086 PD4109a 6 78832960 78832961 TCCCCATGGGACCCATGTTCAAAAA - A GGGGGTGTTAGCATGATCTGTGGGT insertion Somatic Capillary sequencing 21153215 PD4109a 12 115912956 115912956 GGCGCCGAGAGATGCTATCTGAGTC G - GAACAGAAGAGGCTGACCCCAGAGT deletion Somatic Roche 454 pyro-sequencing 21264112 PD4109a X 136196197 136196197 GATAATGCTTTTGCTGTTGTATTTT A - AAACTAATTGCTAAACCCAAGGTCA deletion Somatic Capillary sequencing 21225903 PD4109a 4 135291596 135291596 TTATGTTGTGTTTAATTATACACAA T - TTTTTTCTATCTCCTTTTCATGATA deletion Somatic Capillary sequencing 20707031 PD4109a 8 117836401 117836401 AAAGTAAATTAAAATTTAAAAAAAA T - ATATATATATATACACAAAGATTTT deletion Somatic Capillary sequencing 21267872 PD4109a X 77318349 77318350 TTCCCTATAGGGACAGAACTAATAG - AT TATATATATATATATCTGAGTTTAT insertion Somatic Capillary sequencing 20467776 PD4109a 6 10368089 10368089 GATAACTATGACCTTGAATGGGATA G - AAGCACGCTACACTGACAACGTAAA deletion Somatic Roche 454 pyro-sequencing 21181396 PD4109a 3 182284334 182284337 GAGAGTTCAGACTGAAGAGAAATGG AAGA - AAGAACCCCACAGTCACTCTCATTA deletion Somatic Roche 454 pyro-sequencing 20864782 PD4109a 2 95573640 95573641 AAACAATCATATGTGTTGACAAAAA - A CAACTACTAATAGATTTATAATAGT insertion Somatic Capillary sequencing 21273166 PD4109a X 133557662 133557663 AAAGTTATTGAAAATGTTTTAAGAC - A AAAAGAGAAATAATGAACAAAACTA insertion homo_sapiens_core_58_37c PHF6 ENSG00000156531 CCDS14639.1 ENST00000332070 Somatic Capillary sequencing 21028895 PD4109a 21 18243651 18243652 TTTATTTAACTTGTGGCAATTATTT TC - TCTTCTTCTTTCTGTTTTCTTTCTT deletion Somatic Roche 454 pyro-sequencing 20789006 PD4109a 17 72581561 72581563 GTACCAATTAAAAATAATAAACAGG AGA - AGGAGGATGAAAACTGGCCTGTGTC deletion homo_sapiens_core_58_37c C17orf77 ENSG00000182352 CCDS32721.1 ENST00000392620 Somatic Roche 454 pyro-sequencing 20962980 PD4109a 3 30019937 30019938 TCAAGTTCTGTTAGGTTTTCTGTGA - A AAAAAAAAGCAAGCAGAAAGATTTT insertion homo_sapiens_core_58_37c RBMS3 ENSG00000144642 CCDS33725.1 ENST00000383766 Somatic Capillary sequencing 21124188 PD4109a 9 85710429 85710429 GTGAGAAGGTAAACCAGAGAGGAAG A - AAATGGATTTCCTATAAATGAAGCA deletion Somatic Roche 454 pyro-sequencing 20712947 PD4109a 8 55904103 55904104 AACATCACTCTTCTAATCATTTTTT - T AATGGGATTGCTTAGAATCCTGTAT insertion Somatic Capillary sequencing 20987574 PD4109a 6 74428543 74428544 AGAACACTCTGTAAGTGGTATGTAC - CTT TTATTATTATTTTATTCATATAACT insertion homo_sapiens_core_58_37c CD109 ENSG00000156535 CCDS4982.1 ENST00000287097 Somatic Capillary sequencing 21272687 PD4109a X 127189614 127189615 GTTTTGTTTTGTTTTTTGTTTTTTT - T AAAGTGCCCTGTGGCTTGAACTTTT insertion Somatic Capillary sequencing 21217348 PD4109a 4 74904900 74904901 TCCTCTCTCTATATAGTCTATCCTC TA - TGTTAACCTCCCGGTCTCTGCCTCT deletion Somatic Roche 454 pyro-sequencing 20654396 PD4109a X 45844656 45844656 ACCTCTGTGTGCCTCAGTTCCCTTG T - TTTTTTTAAAAAGGAAGAATAATAG deletion Somatic Capillary sequencing 20958140 PD4109a 3 88582674 88582674 ATAATTAGATATGTAGATATAATTT G - GAACTACTGCTCCCTGATAGTCTTG deletion Somatic Roche 454 pyro-sequencing 20998337 PD4109a 6 165176980 165176981 CAGATAATTTTCTTTTCTTTTTTTT - T TTGTTTTTGTAGAGACAGAGTCTCA insertion Somatic Capillary sequencing 20701152 PD4109a 8 76867623 76867626 ATATCAAATGGTGTATATATTACAT TGTC - TGTATATTATAAGAACACAAAATAT deletion Somatic Roche 454 pyro-sequencing 21037567 PD4109a 21 33808305 33808306 TTGTACTTTGCATGTGGGTTTTTTT - T CCTCACAGAAACAGTGAGACGTTGC insertion homo_sapiens_core_58_37c C21orf63 ENSG00000166979 CCDS13614.1 ENST00000300255 Somatic Capillary sequencing 20773541 PD4109a 16 74112328 74112328 AATGACCACTTAAGCATTAAATTGG A - AAAAAAAATGGTTTGAGAAGGGTGT deletion Somatic Capillary sequencing 20631350 PD4109a 9 9866094 9866094 GTTATGTGCCTCTGAAACCTACTTC T - TTTTCATTTAAAATTTATCTACATT deletion homo_sapiens_core_58_37c PTPRD ENSG00000153707 CCDS43786.1 ENST00000381196 Somatic Roche 454 pyro-sequencing 20918918 PD4109a 10 55509665 55509665 CCGCAAAGCTGTGAAAAGACAGATG A - AAAAAAAGTGAGTTAAATATTCTTA deletion Somatic Capillary sequencing 20826330 PD4109a 11 99598935 99598938 AATATAGAGGAGTCTGATCATACAT GAGA - GAGAGAGAGGGAAAGACAGAGAAGG deletion Somatic Roche 454 pyro-sequencing 21264262 PD4109a X 137687341 137687344 GCAACAAGAATGAAACTCTGTCTCA AAAC - AAACAAACAAACAAACAAACAACAA deletion Somatic Roche 454 pyro-sequencing 21054201 PD4109a 10 5741746 5741747 TTTTGATAATGCAAAGAAAGAAAAC AA - AAGATAGACAGGAGAAAAATGAGTA deletion homo_sapiens_core_58_37c C10orf18 ENSG00000108021 CCDS41485.1 ENST00000380270 Somatic Roche 454 pyro-sequencing 20532759 PD4109a 18 62629616 62629616 CCTGTGGGTACCTGATGCTTATCAC A - AAAAAAATGGGTTAAATTTTGTTCC deletion Somatic Capillary sequencing 21235990 PD4109a 4 110811156 110811203 AGGGTCAGTAAATGTGAATTACCCC AAGCTATGTGGCGTGTTGGAAAAAATAAGAACAAGGGGTCATCAAATG CAAGCTATGTGGCGTGTTGGAAAAAATAAGAACAAGGGGT CATCAAATGAAGTTCTAGTTTAAAA complex Somatic Capillary sequencing 21171977 PD4109a 3 115397568 115397571 TTACAGATTCTGACAGAAAAATATC TTAA - TTAATCAGACTTTATCATGGGCATT deletion homo_sapiens_core_58_37c GAP43 ENSG00000172020 CCDS46890.1 ENST00000393780 Somatic Capillary sequencing 21031532 PD4109a 21 32683132 32683134 GAAAGGTTACACAATGCAGGATGAG AGA - AGAAGGATGGCACTAACAACCGTCA deletion homo_sapiens_core_58_37c TIAM1 ENSG00000156299 CCDS13609.1 ENST00000286827 Somatic Roche 454 pyro-sequencing 20698297 PD4109a 8 55871374 55871374 TCTTTTAACTTTTTCTGAGTCTTGA T - TTTTTTTCAGCTGTAAAAATGGAGA deletion Somatic Capillary sequencing 20970011 PD4109a 3 89380515 89380516 ACATTTTTATCCTGCCTTTTTCCTG - A AAAATATTATGAGCATCTTTCCATG insertion homo_sapiens_core_58_37c EPHA3 ENSG00000044524 CCDS2922.1 ENST00000336596 Somatic Capillary sequencing 20546482 PD4109a 7 19043411 19043411 TGAATGAATTCCTTCTGTAATCTTT A - AAAAAAAACTGGAGAAATAAGAGGA deletion Somatic Capillary sequencing 20657348 PD4109a X 17429724 17429725 AAACAGCAAAAGGCCTTACATTTAG - T TTTTTTTAAAAAAAGAAGACAATTT insertion homo_sapiens_core_58_37c NHS ENSG00000188158 CCDS14181.1 ENST00000380060 Somatic Capillary sequencing 20471391 PD4109a 6 31426193 31426193 TACATATATATATGTTTTTAAAAGG T - TTTTTTTCTGGAAATAGAATCTAGT deletion Somatic Capillary sequencing 21183144 PD4109a 3 193843686 193843689 ATGTAGACAGTTGCCCACAGTAGTT AAGG - AACTATGGAGATTCATGCTCGGTCC deletion Somatic Roche 454 pyro-sequencing 20699278 PD4109a 8 63289474 63289474 AAGATAATTAAGTCACAATAGCTAC T - TTTATACTGACTTTATATATATTTT deletion Somatic Roche 454 pyro-sequencing 20928667 PD4109a 10 119563478 119563478 CTCTTACAACAAATCCACTAATCCT C - CCCCCCCATTGTATGTTGTGGGAGC deletion Somatic Capillary sequencing 21000097 PD4109a 15 24689370 24689370 TTAAAAAATTCTATTAGTATATTTT A - TAACACCAGTTGTTTTTGTATGTTT deletion Somatic Roche 454 pyro-sequencing 20704615 PD4109a 8 101321196 101321196 TGGGAAAAAATTAAACGTTTCTCTC T - CCCATATATAGCCTTAACCACTCTC deletion homo_sapiens_core_58_37c RNF19A ENSG00000034677 CCDS6286.1 ENST00000341084 Somatic Roche 454 pyro-sequencing 20764289 PD4109a 1 215269668 215269669 CATTGTTAGGGGATGATTTAGTAAC - T TTTTTTCCTACTAAAAATATTTATT insertion homo_sapiens_core_58_37c KCNK2 ENSG00000082482 CCDS41467.1 ENST00000444842 Somatic Capillary sequencing 21044132 PD4109a 5 28779589 28779590 GCATCTCAGTTGCTTTTGCTTTTGC TT - TTTTGAAAAACAAAATCAGGGATTG deletion Somatic Capillary sequencing 21036864 PD4109a 21 28856520 28856521 AAAAGATCATAAAATAAATACAAAA - A AAAAAACATATAGTTGCAACACAAA insertion Somatic Capillary sequencing 20714853 PD4109a 8 73697853 73697854 TACCATTTAATCAGGGATTTTTTTT - T ACATCCTGTTTTATATGATTGGAGA insertion homo_sapiens_core_58_37c KCNB2 ENSG00000182674 CCDS6209.1 ENST00000329185 Somatic Capillary sequencing 20464762 PD4109a 20 52109309 52109310 ATTTGCTCCCTTGCATTAATTCTAG - T TTTTTTTTAATTTCTTTTAGAAAGG insertion Somatic Capillary sequencing 20978600 PD4109a 6 121301047 121301048 CCTGGTGTATTACATTTAAAAAAAT AA - GTCTTTTAGGAAAAATTGAAAATAA deletion Somatic Capillary sequencing 20508155 PD4109a 7 108117954 108117955 GCTGTTAAGTGGTAATAATTTTTTT - T ATTTAGTAAAACGTTTCACCCAATA insertion homo_sapiens_core_58_37c PNPLA8 ENSG00000135241 CCDS34733.1 ENST00000422087 Somatic Capillary sequencing 20514164 PD4109a 7 154231340 154231341 TTCCTCACTTATTAAGGTCATTTAT - A AAAAAAAATTACACCTAAGTTATAT insertion homo_sapiens_core_58_37c DPP6 ENSG00000130226 ENST00000404039 Somatic Capillary sequencing 20883691 PD4109a 1 4826527 4826547 TAAGTGAGCAGCCTACCAAAGAGAG GAAATAATGAAGAACCCTTAT - GAATTTTCCATATTTCAGCCTGCTT deletion homo_sapiens_core_58_37c AJAP1 ENSG00000196581 CCDS54.1 ENST00000378191 Somatic Roche 454 pyro-sequencing 20460227 PD4109a 20 54330967 54330967 CTGCCTATACAGAATTCTACCATAA T - TTTTTTTTCACATTGAATAGCCACT deletion Somatic Capillary sequencing 20624916 PD4109a 20 18114280 18114280 ATGTTTTCAAGGGTAGTTTTAACTG T - TTTTGACTTTTTCCTTATGTGCTGA deletion Somatic Capillary sequencing 20584533 PD4109a 5 104584479 104584480 CAATGCACCATAAGGAACTAGAAAA - A ATACACAAAGTAGATCCAAAATAAG insertion Somatic Capillary sequencing 21260962 PD4109a X 108772544 108772544 GAAATATATCAAGATTCTGTCTGTT A - AAAAAAAATATTTAGCCAAGAATTG deletion Somatic Capillary sequencing 21169390 PD4109a 3 98209134 98209134 CATCAATAAATAAAACAAAAACTAG A - AAAAAATATTAAATATTAATGAAAC deletion Somatic Capillary sequencing 20987833 PD4109a 6 76743543 76743544 TTCCTTTTCTCTTTATTTTGTTTTT - T ATTTTCTTATTTGATATTCAGTTCT insertion homo_sapiens_core_58_37c IMPG1 ENSG00000112706 CCDS4985.1 ENST00000369950 Somatic Capillary sequencing 20688262 PD4109a 2 13392318 13392319 TCAGAAGTCTCTAATAGACACCACA - T TTTTTCAGTCTGACTGTCCATTAGG insertion Somatic Capillary sequencing 20744015 PD4109a 1 194917679 194917680 AACCATCCCAAATGCTCACCAATCA AC - GAGTGGATAAATAAAACTTTTTATA deletion Somatic Roche 454 pyro-sequencing 21251424 PD4109a 4 165603070 165603071 GTAATCCCTTTCCTCTAAACTAAAA - A AAAAAAAATGTTTTTAATGTCCACA insertion Somatic Capillary sequencing 20916438 PD4109a 1 118800128 118800129 GCTCAAGATTGTAGGTATTTTTTTT - T GTTAAACTTTATGCATTCAGGATTT insertion Somatic Capillary sequencing 20903582 PD4109a 1 14013507 14013508 AACACTAAAAAAGTTTTTAGTGGCT - A AAAAAATGTTTTAAAAAGAAACACA insertion Somatic Capillary sequencing 20700841 PD4109a 8 74858093 74858095 CATTTAAACAACTGGAAGTATAATC ACA - ACAAGGGACTATGAAGGAAGAATAA deletion Somatic Roche 454 pyro-sequencing 20474477 PD4109a 6 50562505 50562507 AATAAAACCATATTGATTCTCTGAA ATC - TTTTTTTCTCTTGGCAAGTCAAACT deletion Somatic Roche 454 pyro-sequencing 20676245 PD4109a 2 21779532 21779532 TGAAAAATGTATTATATAGGAGTTG A - AAAAAAAACCATTTTGAACAATAAT deletion Somatic Capillary sequencing 20971330 PD4109a 6 69642608 69642608 AAGTGTTCCCTGTATTTGTCTTTAA G - CCAGAAAAAAGACTGTAACATATAA deletion homo_sapiens_core_58_37c BAI3 ENSG00000135298 CCDS4968.1 ENST00000370598 Somatic Capillary sequencing 20509180 PD4109a 7 117986587 117986588 CAGTAACCTAGAGAATAATTTTTTT - T GAGTTTGGATTATTAAATAGATAAC insertion Somatic Capillary sequencing 20744186 PD4109a 1 195840582 195840582 TTTCATGAAAGTCTTCAGTAACCAC T - TTTTTTTTATTTTATTTTTAATTGA deletion Somatic Capillary sequencing 20933239 PD4109a 10 52712794 52712795 CTGCACCCAGCCTGACAGGTTTTTT - T AATTGATGGTGTTCACTCTTCAAAA insertion Somatic Capillary sequencing 20728379 PD4109a 22 45410769 45410769 AGCCCCTCAGCACAGCAGGAAGGCA C - AGTGGAGGCTCCGAGGATGCTGGGC deletion Somatic Capillary sequencing 20785980 PD4109a 17 51637546 51637546 CCATCCTGGCATGACTGTGTGCATG C - CCACAGTGCACTCTCTGTGAATCAA deletion Somatic Roche 454 pyro-sequencing 20722312 PD4109a 8 136971896 136971897 ACAGAAATTTGTGTGTGTGTGTGTG - GT TGTGAAAAGAAGAGTCAATCTATGT insertion Somatic Capillary sequencing 20896584 PD4109a 1 91362082 91362084 ACAATCTTGGTCTTCATAATCCTTG ATA - ATATTGATTTTCTTTAAGCTATCAA deletion Somatic Roche 454 pyro-sequencing 21265956 PD4109a X 151373788 151373788 GAACAGCAGTTTGTCAATATGTATC A - ATTTTTTTTAATGTGTCTACTTTCT deletion homo_sapiens_core_58_37c GABRA3 ENSG00000011677 CCDS14706.1 ENST00000370314 Somatic Capillary sequencing 20703574 PD4109a 8 94375127 94375127 ATATAATTCAGCCTGCAAAAACTGA T - TTTTTTTTACCTTACAAAAGGGGGA deletion homo_sapiens_core_58_37c AC011118.2 ENSG00000246662 ENST00000501400 Somatic Capillary sequencing 20794356 PD4109a 17 52467839 52467840 GTATGTTTCACTTATTCATTTTTTT - T AATATTATGAACCTTGAATATTGTT insertion Somatic Capillary sequencing 20775022 PD4109a 16 83305135 83305135 AAAAACAAAACAAAACAACAACAAC A - AAAAAAAACGCTGTACCTAGAAGTA deletion homo_sapiens_core_58_37c CDH13 ENSG00000140945 ENST00000268613 Somatic Capillary sequencing 20705543 PD4109a 8 107149110 107149128 AAGAAACTCAATTGGAATCTATTGT ATCTTTAACTTCAAAATAG - ATTGAGACATTTTTTAACAGCAGCA deletion Somatic Roche 454 pyro-sequencing 21149547 PD4109a 12 89299373 89299373 GGTTAATTTTTAGGCAAAGTGGGTT A - AAAAAAAGACATATCAATCAAAGAT deletion Somatic Capillary sequencing 20720065 PD4109a 8 118540604 118540605 AATATTAAAATTGTAAATTTTTTTT - T AAGTTACACTTCAAAAATTAAAGGG insertion homo_sapiens_core_58_37c MED30 ENSG00000164758 CCDS6323.1 ENST00000297347 Somatic Capillary sequencing 20835114 PD4109a 11 81499005 81499006 ATGAGTCAGTTTTAGAAAGCAGCTA - TAT ACAGATGCTCTATACAGATATACAG insertion Somatic Roche 454 pyro-sequencing 21228377 PD4109a 4 152343129 152343129 AAAGTATGCAAGTTAGCAAAATCTT G - TTCTACTAGGGGATGCAACCATTTT deletion homo_sapiens_core_58_37c FAM160A1 ENSG00000164142 CCDS47146.1 ENST00000435205 Somatic Capillary sequencing 20478238 PD4109a 6 8813693 8813694 TTTAAAGAGTGCAGGATTTAAAAAA - A TTTTTTAAAAAGGTATTTGCATTAT insertion Somatic Capillary sequencing 20787706 PD4109a 17 65076302 65076302 AAGATATAACTGTTCATTTATTTTT C - CCTTGAATGGTTAATTAATCATTTA deletion homo_sapiens_core_58_37c HELZ ENSG00000198265 CCDS42374.1 ENST00000358691 Somatic Roche 454 pyro-sequencing 20653444 PD4109a X 36879429 36879432 TTCTGGGGAAAATAAAAGCAAACAT TCTC - TATCTTTACATCATATACATTTCTG deletion Somatic Roche 454 pyro-sequencing 21272924 PD4109a X 129720777 129720778 CCTATTAAAAGTTTAAAAAATAATA - A AAAAAGATGTAATTAGGTGGTAGAA insertion Somatic Capillary sequencing 21035684 PD4109a 21 22384131 22384132 AAAACAAATAACCCAATTTAAAAAA - G GGGGCCAAACAACTGAGTAGATATC insertion homo_sapiens_core_58_37c NCAM2 ENSG00000154654 CCDS42910.1 ENST00000400546 Somatic Capillary sequencing 20705692 PD4109a 8 108086038 108086038 TAGATATTTTATGACCTTAGGTTTC T - TTTTTTTATGCTTAACCTATAGTAA deletion Somatic Capillary sequencing 21206381 PD4109a 4 36856234 36856236 GCCTCTTGCAACTTTCTGGAAATTG TCT AG TTATATGGAACAGAAGAAACACAAA complex Somatic Capillary sequencing 20822222 PD4109a 11 70237897 70237900 AAGTGACTCTTAAGCACCCCCAACC AACT - GAATAGACCCTTCCCCCTTGGCCAA deletion homo_sapiens_core_58_37c AP000487.1 ENSG00000246889 ENST00000500185 Somatic Capillary sequencing 21253562 PD4109a 4 180410866 180410867 AACACGGTGAAACCCCAACTCTACT - AAAT AATAAATAAATAAATAAATAAATAC insertion Somatic Capillary sequencing 21152670 PD4109a 12 112122349 112122350 CAGCACTTACCACAGTTGTAATTCT AC - ACATATTCTGCACTTATTTAATTCA deletion homo_sapiens_core_58_37c BRAP ENSG00000089234 CCDS9154.1 ENST00000327551 Somatic Capillary sequencing 20722453 PD4109a 8 137888876 137888877 ACCATAAGTTAGTTATTGTTTGTTT - T TTTTTGGGTATGTCAATTATATGTA insertion Somatic Capillary sequencing 20709003 PD4109a 8 130004912 130004914 GTTTATTTAGAATTCTATCTAGTCA CTT - CTTTTTCTCAGATGCTTTTCCGTTC deletion Somatic Roche 454 pyro-sequencing 21245503 PD4109a 4 120884860 120884861 AGAATTCTGAATTTCATGTTTTTTT - T ACTCCAAGATTCACAGATGAAATGT insertion Somatic Capillary sequencing 20877879 PD4109a 2 202320848 202320849 GACCCTTTGGTCTTTGTTACAGCTA - T TTTCTGCTGAAATACTAGCATGAAA insertion homo_sapiens_core_58_37c STRADB ENSG00000082146 CCDS2348.1 ENST00000194530 Somatic Capillary sequencing 21169777 PD4109a 3 101084903 101084904 TACCATGTGATGGCATCAACTACTC AG - AAGCTGATTAAATGAAAATTAATGA deletion homo_sapiens_core_58_37c SENP7 ENSG00000138468 CCDS2941.2 ENST00000394095 Somatic Roche 454 pyro-sequencing 20691792 PD4109a 2 42653171 42653172 TATTCAAATGTTCAAGCTGTAGAGA - T TTTTTCAGATGTGCATACAACATAC insertion Somatic Capillary sequencing 20952113 PD4109a 3 47613307 47613307 GTTCTGCATAAATTGTCTCTGGGGT C - CCAAGGAAGCTGAACTCCAATCTCC deletion homo_sapiens_core_58_37c CSPG5 ENSG00000114646 CCDS2757.1 ENST00000264723 Somatic Roche 454 pyro-sequencing 20634740 PD4109a 9 32774775 32774778 TTGTTTATTGTCTTCTGTTTTATAG TTTC - TTTCTTTATTCCTTTCTTGCTGTCT deletion Somatic Roche 454 pyro-sequencing 25507547 PD4115a 12 32184218 32184218 TGGAAGGGAAAAGCAGTTAAGAAAA G - GGTGAGCTATCAATCCAGCTGCCAC deletion Somatic Roche 454 pyro-sequencing 25621278 PD4115a 14 70170640 70170651 AGCACAATGCTAATACCTTCTCTAA TGTATCGTCCAT - TTCATTTTTCCTTGAATGGAGCTAC deletion homo_sapiens_core_58_37c KIAA0247 ENSG00000100647 CCDS9796.1 ENST00000342745 Somatic Roche 454 pyro-sequencing 25775826 PD4115a X 32908807 32908817 GTCTAAAAAAAAGAAATTCGGGAAA TCAGAACGTTT - TATCATGATCTGGGGTTATGTTGTC deletion homo_sapiens_core_58_37c DMD ENSG00000198947 CCDS14233.1 ENST00000357033 Somatic Capillary sequencing 25475742 PD4115a 11 99652519 99652519 ACAAAATTCAACAACCCTTCATGCT A - AAAACTCTCAATAAATTAGGGATTG deletion Somatic Capillary sequencing 25648267 PD4115a 1 76795129 76795130 AAGCTTATGTGGTATAACTGCTAGA - A AAGATGTTTGAAAAATAATAATATA insertion homo_sapiens_core_58_37c ST6GALNAC3 ENSG00000184005 CCDS672.1 ENST00000328299 Somatic Capillary sequencing 25552769 PD4115a 21 32342161 32342168 ACTCTTTTCATGCAAGAAATTTTTA TCCTCAGG - TCCTGTCCAGTTTCTTACAATTGAT deletion Somatic Roche 454 pyro-sequencing 25612408 PD4115a 15 97485010 97485010 AATCTTTTCAAATACACATAAGACG T - TTACCAAAATCACCATATGCTAAGC deletion Somatic Capillary sequencing 25724066 PD4115a X 120409726 120409731 CTATCCCAAATAGTTCTCTATAAGC AGTGCA - AGAACAGCCTAAAACAGAAAGTTGG deletion Somatic Roche 454 pyro-sequencing 25506464 PD4115a 12 26525655 26525666 CTTTTATCACCCCAATAAAATGGGT TATCTTATTATA - TATCTGTTGGCAGTATGTCTTTGTT deletion homo_sapiens_core_58_37c ITPR2 ENSG00000123104 CCDS41764.1 ENST00000381340 Somatic Roche 454 pyro-sequencing 25693582 PD4115a 3 109430861 109430862 TGGAATATGATGCAGCAATAAAAAA - AAAAAAT ATGAGTTCATGTCCTTTGTAGGGAC insertion Somatic Capillary sequencing 25430159 PD4115a 6 41690418 41690429 AATCACTGGGCACAGTACCTGACAT GGAATAAGGCCA - GGTAAACATGAGCTCTTACTATCAA deletion homo_sapiens_core_58_37c TFEB ENSG00000112561 CCDS4858.1 ENST00000230323 Somatic Capillary sequencing 25539156 PD4115a 16 55519236 55519255 AGCATGGCGATGGATACCCCTTTGA CGGTAAGGACGGACTCCTGG - CTCATGCCTTCGCCCCAGGCACTGG deletion homo_sapiens_core_58_37c MMP2 ENSG00000087245 CCDS10752.1 ENST00000219070 c.555_574del20 p.G186fs*16 Somatic Roche 454 pyro-sequencing 25592968 PD4115a 18 28479202 28479215 GTACAAATACTACTGGGAATGTGGC AGTGGGTGAGAGGG - AGACACAGTTAAGCTGTGCAGGTGG deletion Somatic Capillary sequencing 25407297 PD4115a 17 40875539 40875545 ATAAGATGGACTAAGATTCTCCAAT AATAAAA - AAAAATTATGATTACAACTCATGCC deletion homo_sapiens_core_58_37c EZH1 ENSG00000108799 CCDS32659.1 ENST00000428826 Somatic Capillary sequencing 25476476 PD4115a 11 104905437 104905437 CCATTTCCACATCAGTCCCTGGAAA G - CAGAGATCATCCTCTTATGTCGCAT deletion homo_sapiens_core_58_37c CASP1 ENSG00000137752 CCDS8330.1 ENST00000436863 Somatic Roche 454 pyro-sequencing 25426859 PD4115a 6 23227199 23227216 AGAATGATGGTGGTATTTTGATAGG GATTGCATTGAATTTGTA - GATTGCTTTTGGCAGTATGGTCATT deletion Somatic Capillary sequencing 25496657 PD4115a 9 264016 264017 AGCCAGTATTTCTTTAAATATTACT - AAATATTACTT TGCTCCAGTTTCATCTCTCCTCCTC insertion homo_sapiens_core_58_37c DOCK8 ENSG00000107099 ENST00000453981 Somatic Capillary sequencing 25506198 PD4115a 12 25232044 25232044 TCCATCTGCCCTATACCATCCCATT C - CCATATCCTTTCCAAAAGAGCTGAG deletion homo_sapiens_core_58_37c LRMP ENSG00000118308 CCDS8701.1 ENST00000361433 Somatic Roche 454 pyro-sequencing 25870884 PD4115a 8 41138372 41138380 CAGGAACGGGTGCTCGGCCCACATT CTGGAGCGC - CTGCCCCAACTCCCAGAAGCGTTCC deletion homo_sapiens_core_58_37c SFRP1 ENSG00000104332 CCDS34886.1 ENST00000220772 Somatic Capillary sequencing 25483052 PD4115a 20 44907025 44907053 CAGGCCTCAGTTTCTCCTTAAAGGT TGTTTCAGCTCCAGGAGACTAGAACTCCA - TGGTTCAATGCCCCTTCCAGTCCTG deletion Somatic Capillary sequencing 25413572 PD4115a 17 76214348 76214359 ATCTGAAGTTGAAATGTAACTGGGC TTTATTTATTTA - TTTATTTATTTATTTATTTTTAATT deletion homo_sapiens_core_58_37c BIRC5 ENSG00000089685 CCDS32752.1 ENST00000301633 Somatic Capillary sequencing 25593320 PD4115a 18 31162059 31162063 GATGCATTTTCATCTGTTTTATCTG CTCTT - CTAAGGTTGTAGAGTCTCAGAGGAT deletion homo_sapiens_core_58_37c ASXL3 ENSG00000141431 CCDS45847.1 ENST00000269197 Somatic Roche 454 pyro-sequencing 25776164 PD4115a X 36310522 36310522 TTTCAAAATACCCATTAGTTGTTTG T - TTACTGACTTGATAATGTTTTCAAA deletion homo_sapiens_core_58_37c CXorf30 ENSG00000205081 ENST00000378653 Somatic Roche 454 pyro-sequencing 25593285 PD4115a 18 30763949 30763958 AAAGACTTATCTGTTCTCTATCTAT GTTTACTCTA - GCCCAGAATCACTGCCACCTATTAA deletion homo_sapiens_core_58_37c C18orf34 ENSG00000166960 CCDS42424.1 ENST00000383096 Somatic Capillary sequencing 25850465 PD4115a 17 21938528 21938546 GCCAGGCATACTGGCTCACACAGGT AATCCCAGCACTTTGGGAG - ATTGAGGTGGGCAGATTGCTTGAGC deletion Somatic Capillary sequencing 25568477 PD4115a 7 50481603 50481627 TAGAGCAGGAAGCAGAGAGGCAGGA CTATCTGCCTCCTCAGCTTGCATCT - CTACTCAGCATTGAAATTCAGGACC deletion Somatic Roche 454 pyro-sequencing 25600632 PD4115a 18 37650288 37650302 GTGAGTGAGTTCTCATGAGATCTGA TTGTTTTATAATGGG GAA CTTTTCCCCCTTTTGCTCAGTACTT complex Somatic Capillary sequencing 25636891 PD4115a 18 13988449 13988476 AAGGAGGGGAAGGACTGAAGACAAG CATTCAAATATGAGGACCTCTTGACTTT - CAAATGGTGAACAGCTCGGCTCCTT deletion Somatic Roche 454 pyro-sequencing 25541974 PD4115a 16 76248881 76248881 ACAGACAGAAGAGGAAAAGACACAT G - CACACAAGAAAGCAATGTGACCCTG deletion Somatic Capillary sequencing 25722811 PD4115a X 106356378 106356394 ATTATTTGTGAAATGGGATCTAAAA ATCATTAAGGTCAATTT - ATGTCTGGTACAATAATTTAAATGT deletion homo_sapiens_core_58_37c RBM41 ENSG00000089682 CCDS14526.1 ENST00000372479 Somatic Roche 454 pyro-sequencing 25870210 PD4115a 8 35761353 35761383 AATTAACTTCACATTTGTCCTTGGT AAAACGGGCTACCAGATTATTGTAGAGAGCA - AAACAAGTGTGTTTGAATGGTCTGC deletion Somatic Roche 454 pyro-sequencing 25805239 PD4115a 4 9753481 9753507 TCACCCTGCCCTCCTACTACATTCC TTTTTGCTAAAATAATAAAAATAATAA - TCAATAAAAACTGAGGGAACTCAGA deletion Somatic Roche 454 pyro-sequencing 25493478 PD4115a 9 24732508 24732523 TTTATATTTCAATCAACCAGTCTAG TGATTTTATCTTAAAT - TAGTATCATTCAAACAGTTTAAATG deletion Somatic Capillary sequencing 25492662 PD4115a 9 17801952 17801956 ATCCACATGGGTGACAGGCATCCTG CCCCA - CCCCATGGTTCTTACAGAGGCAGCG deletion Somatic Roche 454 pyro-sequencing 25518220 PD4115a 5 27900368 27900394 GGGACTGCATAAATTAATGCCACCA TGAGGGACTTGAAAGACACAAGGGTTG - TGATTCCCACCACATCTACATTCAA deletion Somatic Roche 454 pyro-sequencing 25497316 PD4115a 9 6013428 6013429 CATGGACTCTGCTGCTGCCACTCGA - CATTGT ATTGTCATGGAAATAAAATTTCAGT insertion homo_sapiens_core_58_37c RANBP6 ENSG00000137040 CCDS6467.1 ENST00000259569 c.2179_2180insACAATG p.N726_V727insDN Somatic Capillary sequencing 25838452 PD4115a 19 20091953 20091971 ATGAATAAAAAGAATCAATATTGTT AAAATGGCTATACTGTCCA - AAACAATTTACAGATTCAATGCTAT deletion homo_sapiens_core_58_37c ZNF90 ENSG00000213988 ENST00000427401 Somatic Capillary sequencing 25565553 PD4115a 7 30623918 30623918 AAACGGGGAGATGTGAGAGGAAAAT A - AATCTCAGGACTCCAAAATTACTAA deletion homo_sapiens_core_58_37c AC006978.1 ENSG00000251425 ENST00000507825 Somatic Capillary sequencing 25531994 PD4115a 19 54800171 54800179 ACTCATATGACAAATTATTCAACAC CTTTGACAA - CTTATAAGTGAAGTATTTGATTCCT deletion homo_sapiens_core_58_37c LILRA3 ENSG00000170866 CCDS12887.1 ENST00000251390 Somatic Roche 454 pyro-sequencing 25428952 PD4115a 6 32931727 32931768 ATCCAAAGGCTTCACCAAACTGCCA AAAAAGCTAATGGCACATAAAAAGCTTAAGGAGTCCTGATTT - AATCAGTCATTCAATGAACATGACA deletion homo_sapiens_core_58_37c HLA-DMA ENSG00000204257 ENST00000422832 Somatic Roche 454 pyro-sequencing 25775107 PD4115a X 26673534 26673537 AGGGATGTTCTTGGTATAGATTTTT ATTT - TTATTACATTGTAGTACAAGAATGT deletion Somatic Capillary sequencing 25490175 PD4115a 9 265435 265441 ACACCCACAAATGTCTGTCATTAAT ACGTATC - ACTAGCTTTGTACTTTACACTGTAT deletion homo_sapiens_core_58_37c DOCK8 ENSG00000107099 ENST00000453981 Somatic Roche 454 pyro-sequencing 25538264 PD4115a 16 48889332 48889348 TTTGAGGTACATATAGTTTCTGTCC TGAAGTAGCTCACAATT - TGGAGAGAGAGATAGATGCTGACAG deletion Somatic Capillary sequencing 25506080 PD4115a 12 24642729 24642737 CAGCACATCCCTTATCAGCAAACAA GGCTCTGAT - GGCTACAAAGGGGTGTATGCTTTAA deletion Somatic Roche 454 pyro-sequencing 25765159 PD4115a 7 102651928 102651929 GAAACCCCATCTCTACTAAAAAATA - A AAAAAAATTAGCCAGGTGTGGTGGC insertion homo_sapiens_core_58_37c FBXL13 ENSG00000161040 CCDS47678.1 ENST00000379308 Somatic Capillary sequencing 25463971 PD4115a 9 98962745 98962745 ACATACAAGGCTAAACAATAGGGAA G - GGGGAAATCCACAAAGTAAATTTTA deletion Somatic Capillary sequencing 25566224 PD4115a 7 35472089 35472089 ACGCTCCATTCAAAAGGCACAGAGT G - GCAAGTTGGATATAAAACCAAAACC deletion Somatic Capillary sequencing 25480269 PD4115a 11 62032000 62032019 CCTGCTGGCATTCTTACCATATGTA GGGCTGCATCCACTGTGCAC AGAA TGGGTGTGAGGCTGGCTGGCACTGC complex Somatic Capillary sequencing 25520299 PD4115a 5 40656199 40656199 TGACAAAGCATACAGAAACACAAAT G - GGGGAAAGGACACCCTATTCAGTAA deletion Somatic Capillary sequencing 25705225 PD4115a 5 57094742 57094743 AGAACAACTTGATGTAGATATTTAA - A AAAAAAAATCTTTTAATAAAGGTTC insertion Somatic Capillary sequencing 25599717 PD4115a 18 72882307 72882314 TGGGTTTTGGATTTCTAGTCTCTAG GACTGTGA - GAATACATTTCCGCCGCTTCCAGCC deletion Somatic Roche 454 pyro-sequencing 25777126 PD4115a X 47850459 47850459 GTTATGGGTTGAATTATGTCCCCCC A - AAATTCGTATGTTGAAATCCTAACC deletion homo_sapiens_core_58_37c ZNF182 ENSG00000147118 CCDS35236.1 ENST00000396965 Somatic Capillary sequencing 25627849 PD4115a 20 6343268 6343271 GATGTTTCCAGTTCTTCTCCTCCTG TTCT - TTCTTAAATATATGCAATCACCTTC deletion Somatic Capillary sequencing 25685989 PD4115a 3 42904739 42904740 ACATTTATGCAGTCAACAAACATAT - A AAAAAAAGCTCATCATCACTGGGCA insertion homo_sapiens_core_58_37c CCBP2 ENSG00000144648 CCDS2706.1 ENST00000422265 Somatic Capillary sequencing 25411832 PD4115a 17 66899202 66899222 TTCAAGATGTTAAACCGTAGATTTG TCCTTTGTTCATTTCTCCTGT - TGCTTTTTGGCCATTGGATATCCCA deletion homo_sapiens_core_58_37c ABCA8 ENSG00000141338 CCDS11680.1 ENST00000269080 Somatic Roche 454 pyro-sequencing 25797227 PD4115a 22 37837132 37837140 GGATACCCATGTGACCCAGTCTGAC CAATGAGAT - CTAAGCAGAAAGCAGCTAGTGCATT deletion Somatic Roche 454 pyro-sequencing 25503122 PD4115a 12 7304769 7304776 GTTCCAGTCTTTTTTCTATGCTTAA TTTTTCCT - TTTTAGAAAGTTAGGATTAGCCTAT deletion homo_sapiens_core_58_37c CLSTN3 ENSG00000139182 CCDS8575.1 ENST00000266546 Somatic Capillary sequencing 25601954 PD4115a 15 24464106 24464132 ATAGTTACAGGTACAGTCAACAAGA AATTTGGATATTTCAGTGTCATACAAC - AATTTGACATAATAATCATAATTAT deletion Somatic Roche 454 pyro-sequencing 25569267 PD4115a 7 55227784 55227797 GAGAAACAAAGTTTTCAGGGATACA TTGTTTTTATAATT - TTTCACCACATGATTTTTCTTCTCT deletion homo_sapiens_core_58_37c EGFR ENSG00000146648 CCDS5514.1 ENST00000275493 Somatic Roche 454 pyro-sequencing 25627882 PD4115a 20 6561553 6561553 CCTTTTCCCAAAGGACCTCACCCAC T - TTACCTCAACCCCACCCCATCCCAT deletion Somatic Roche 454 pyro-sequencing 25672585 PD4115a 11 41045297 41045309 TCCTTTAAGTCACACCTAACATAGG ATTGAGACAAAAT - TAATTGCTTATGTTGAAAAATATTG deletion Somatic Capillary sequencing 25475599 PD4115a 11 98814351 98814360 GTTTGCATATAGATTTAAGGGCTCC TTCTGTAGAG - TTCTTCCCTTTATGGGTTCGTATTT deletion Somatic Capillary sequencing 25425019 PD4115a 6 13346525 13346570 CAAGTGAATGCCATATTGAAAAGGA TCTGATAAATAAAGTATCACTCAGGCAACATCAATAAGCTGCTTTC - TCCTGAGATATTTGTGCTTCAGCAT deletion Somatic Roche 454 pyro-sequencing 25868575 PD4115a 8 24678499 24678507 TAATCTCATTCAATCCTCACAACAA GCCTTTGAG - GCACATACTGTGACTTTCCTGATTT deletion Somatic Roche 454 pyro-sequencing 25602319 PD4115a 15 26410628 26410628 CCAAGTGATCCTCCCACCTCAGCCT C - CCAAAGTGTTGGGATTACAGGTGTA deletion Somatic Capillary sequencing 25427234 PD4115a 6 25067854 25067878 CGGAGGTAAGCATTGAGGATGGTGG AGGTCTTGACAGATGCAAAGAAAGA - AGAAACTTAATGGGAGCTATAACTG deletion Somatic Capillary sequencing 25746346 PD4115a 10 655184 655195 CTCTGCTCTCCTTACAGGAACTTTC CAAAAGTAAATT - CTGGAATTAACAGGACAAGTTTTTT deletion homo_sapiens_core_58_37c DIP2C ENSG00000151240 CCDS7054.1 ENST00000280886 Somatic Capillary sequencing 25468209 PD4115a 9 133343977 133343977 GTACATCTGGCTAATTTTTGTTTTT C - ATATATTTATTTATTTATTTTTTTA deletion homo_sapiens_core_58_37c ASS1 ENSG00000130707 CCDS6933.1 ENST00000372394 Somatic Capillary sequencing 25567437 PD4115a 7 43573903 43573903 TCCTCTTGCAGACTTCCCAACTGCA T - TTTTTTGTCATTACAAAAACTGCTT deletion homo_sapiens_core_58_37c HECW1 ENSG00000002746 CCDS5469.2 ENST00000395891 Somatic Capillary sequencing 25697513 PD4115a 3 143935037 143935038 AGAACAACCAGGACATTCAGTAAAT - G CTTTTATTTCTTAGGTTGTATAAAT insertion Somatic Capillary sequencing 25482379 PD4115a 20 39980377 39980385 AGGTTCTGCTGGGCAGCACTGCCTT AGAGAATTC - AGAGTCAGAGGGCACTTACTGTCCA deletion homo_sapiens_core_58_37c LPIN3 ENSG00000132793 CCDS33469.1 ENST00000373257 Somatic Roche 454 pyro-sequencing 25423977 PD4115a 6 7472554 7472560 TTGAGGAATCACTATACTGTTTTAG TTCCAAT - TTTTTCATATCCTCACCAACACTTG deletion Somatic Capillary sequencing 25659237 PD4115a 6 106940466 106940467 GAAGGACCGACCCAGAGCTAGGGTG - T TGTATTTTAAGTATTTATTCAAACG insertion Somatic Capillary sequencing 25752577 PD4115a 10 35438413 35438433 ATTGAAATATTTTCAGGTGCCCACC GTATTTTCAGTTTTGACACTA - GTAGCCATGTGGAGGTGGAATTGAA deletion homo_sapiens_core_58_37c CREM ENSG00000095794 CCDS7181.1 ENST00000337656 Somatic Capillary sequencing 25561500 PD4115a 7 3427335 3427349 ATGTAGTATCACTGAACTGTACATT TAATGTTTAAGGTGG - TAATCTTTTGTTACCTGTCTATTAC deletion homo_sapiens_core_58_37c SDK1 ENSG00000146555 CCDS34590.1 ENST00000404826 Somatic Capillary sequencing 25783639 PD4115a 10 50046646 50046647 TCATTGTGGAAATTCTCAAACATAC - TATA ATAAGTAGTAAAATAATGTGATGAA insertion homo_sapiens_core_58_37c WDFY4 ENSG00000128815 CCDS44385.1 ENST00000325239 Somatic Capillary sequencing 25750637 PD4115a 10 24460407 24460407 TTTAATTTCCAAATTACAATAAATG T - TTTTAAAAGTTAATATTGTTTTTCC deletion homo_sapiens_core_58_37c KIAA1217 ENSG00000120549 CCDS41496.1 ENST00000376462 Somatic Capillary sequencing 25618335 PD4115a 14 48702584 48702590 GGTTCACAAATCGTAAATCTGCATT CAATAAA - CATTGAGCCTATGCTGCCTACACAG deletion Somatic Roche 454 pyro-sequencing 25414326 PD4115a 17 80936021 80936027 CCTAAAATCCTTTATTTCTATAAAA ACAAGCC - ACGCGTGGCCTTTCCTTTCCCGGCT deletion homo_sapiens_core_58_37c B3GNTL1 ENSG00000175711 CCDS32778.1 ENST00000320865 Somatic Capillary sequencing 25870006 PD4115a 8 33983297 33983297 ACAACCCCTCTTCTTTTTCATTTAG T - TTTTGTCAATTTCAGTGGGAGCTCT deletion Somatic Capillary sequencing 25568283 PD4115a 7 49181111 49181126 CAGCGAAAAATATGGTCTTCATAGG TGGTGTTATAACCTTA - TGGTGTGTCACAGTGAAGTTGGAAA deletion Somatic Roche 454 pyro-sequencing 25637463 PD4115a 18 8997493 8997511 TGTGTGTGTGTGTATATATATATAT TAAATTGTAGTGTTAATTT ATTAAATTGTAGTGTTAA TTTTCATTCCTTGATTCCTAAGGTC complex Somatic Capillary sequencing 25538206 PD4115a 16 47840141 47840148 AAACTCACAGCCAACCACTGCAGTT AGTGATAG - AGCTTAGAAAGTGCCCCACTCCCAA deletion Somatic Roche 454 pyro-sequencing 25856517 PD4115a 16 17650142 17650170 GTTCCCCTCCTGGATGTGCCAGTCC CTGGCTGCATGACTTGGAGAGGCCCAAGT - TTGGTTCTTTGAAGTGACTTGAATG deletion Somatic Capillary sequencing 25475741 PD4115a 11 99651501 99651504 TAAAATTGTGTGGTTTTTTGTTTGT TTGA - TGTTATGACATAGAGGAACACACTG deletion Somatic Roche 454 pyro-sequencing 25414067 PD4115a 17 79224941 79224949 CCTGGCTGGCTTTAAATACTCCGAG TGTTAAAAC - TGTTAACAAACCTGCTTTAAAGACG deletion homo_sapiens_core_58_37c SLC38A10 ENSG00000157637 CCDS11780.1 ENST00000288439 c.? p.? Somatic Capillary sequencing 25598581 PD4115a 18 66244611 66244621 AATGAGTTTAGAAAAATAATTCATT GAGACCGAAGA - GAAGCCAAGGATAAGGACACTAAGA deletion Somatic Capillary sequencing 25567551 PD4115a 7 44131190 44131216 TAGCCAGGTGTAGTGGTACATATCT GTAATCCCAGCTACTCGGGAGGCTCAG - GCACGAGAATTGCTTGAGCCCGGGA deletion Somatic Capillary sequencing 25519558 PD4115a 5 35217810 35217823 TTTGAATTTTAAATGAACTAAATGA ATTTTAAACCATGC - ATAAAAATAAATAAAAATTTAAAAG deletion homo_sapiens_core_58_37c PRLR ENSG00000113494 CCDS3909.1 ENST00000382002 Somatic Roche 454 pyro-sequencing 25413730 PD4115a 17 77050045 77050045 AATGGAAGCTCTAGAAGTGAAAAAC A - AAACAAATGAATTTAAGAGCCTGGG deletion Somatic Capillary sequencing 25409209 PD4115a 17 51115310 51115333 CGAAACTGTCAGAAATAAATTTTCA TTGTTTATTTAAAAAATCTACAAC - TTGTCTATATCGTTAGCCTATATTT deletion Somatic Roche 454 pyro-sequencing 25555429 PD4115a 21 36328009 36328018 AATTTTTAAGCATTGATGGAAATGC GTTAATGAGC ATATAAA ATATAAAATTGTGGTTGAATGGTGA complex Somatic Capillary sequencing 25756275 PD4115a 10 14814361 14814362 GAGCAAGACTCCATCTTAAAAAAAA - T TATATATATATATATATGCACCTCA insertion homo_sapiens_core_58_37c FAM107B ENSG00000065809 CCDS7102.1 ENST00000181796 Somatic Capillary sequencing 25495468 PD4115a 9 36883901 36883901 GTAGAAATCTCAACAAAAGGTACAA T - TTTCTAGGAAAATATGAATTGCCAA deletion homo_sapiens_core_58_37c PAX5 ENSG00000196092 CCDS6607.1 ENST00000358127 Somatic Capillary sequencing 25514264 PD4115a 5 3330105 3330126 GAGTTCCAAAACGATTTCTATGGGG ACAAAGTCAAGGTGTTGCCGGG - GCTGGTCTTGCTGGAGGCTCGAGGG deletion Somatic Capillary sequencing 25407639 PD4115a 17 42958049 42958066 AAAGAGTGGTCAAGACCTCTTCCTA TGCAAGAGGGGTTCATTT - TGTTTTTGGGGCTCCCCAGTTGCTA deletion homo_sapiens_core_58_37c EFTUD2 ENSG00000108883 CCDS11489.1 ENST00000426333 Somatic Roche 454 pyro-sequencing 25466772 PD4115a 9 121986888 121986899 ATAACCACAAAGGTTGATTTGTTGC TCATATTTCGTG - TCAGCTGTGCTTTGGCTCTGCTCCA deletion homo_sapiens_core_58_37c DBC1 ENSG00000078725 CCDS6822.1 ENST00000373969 Somatic Roche 454 pyro-sequencing 25621802 PD4115a 14 73985982 73985982 TCCTTTTGCCCTAATCTAAGCCCCT A - GGATCCATGACTGCCATACTCTGGG deletion homo_sapiens_core_58_37c HEATR4 ENSG00000187105 CCDS9815.1 ENST00000334988 Somatic Roche 454 pyro-sequencing 25429299 PD4115a 6 34954761 34954774 TGCAAGAAGCTGCTCAGGGTTACTG AAGAAAGCTGAGAA - TGATTTCCTGTGATTGATTTACACA deletion homo_sapiens_core_58_37c ANKS1A ENSG00000064999 CCDS4798.1 ENST00000360359 Somatic Capillary sequencing 25722812 PD4115a X 106379570 106379570 ACTTAGCAGGAATGCACCAATTCCT A - AAAGACTACAAACTATGAGATCTCA deletion homo_sapiens_core_58_37c NUP62CL ENSG00000198088 CCDS14527.1 ENST00000372466 Somatic Capillary sequencing 25777623 PD4115a X 54572186 54572186 ATAAAATTAACTACAGATAAAGCTT A - AATACCCTTTCACCAGTCTCCCTAA deletion homo_sapiens_core_58_37c GNL3L ENSG00000130119 CCDS14360.1 ENST00000396243 Somatic Capillary sequencing 25532006 PD4115a 19 54860147 54860160 CAGGAACTGGCTGTTTTACTTCTTT TGTGGTTTTTCGGC - TGCCCCAGACTTCTTGGCTCCTTCA deletion Somatic Capillary sequencing 25464566 PD4115a 9 104689070 104689075 TTTTCATCACCCCAAAAATAAACTT CATGCC - CATTAGTGATCTCTCTCCATTCTTC deletion Somatic Roche 454 pyro-sequencing 25810585 PD4115a 4 42838526 42838547 GAGGCCCTCATCTTTAGGGAGCTGG ACGCAATATCTGTTGGACAGAA - ACATTAGAAGATAGTTTGTTTGACT deletion Somatic Capillary sequencing 25810867 PD4115a 4 44815794 44815814 GGTTATATCCCTCTCTCTAGTGGCT ATTTTGTATGTAAGTTCCTGC - ATTTTTTTATCATGATTTTTAACTT deletion Somatic Roche 454 pyro-sequencing 25569697 PD4115a 7 57495136 57495136 TTCCAAAATCCATTATAGTCTTCTT G - GTCAAAATACAGTCACAAACATTGA deletion Somatic Capillary sequencing 25615519 PD4115a 14 29117640 29117640 TTATTTATTTATTTATTTTAAAGTC T - TTTTTCATAGACATTTATTCTTTGT deletion Somatic Roche 454 pyro-sequencing 25673300 PD4115a 11 45854254 45854254 TGGACCTACCCTCTTTGGGATTTTT G - GGCCCATTTCTGCTCAGAGCCTACC deletion Somatic Roche 454 pyro-sequencing 25772993 PD4115a X 5598088 5598088 GTAACATAGGGAGACCCTGTCTCTA C - AAAACATAAGAAAACAATAGCTGAG deletion Somatic Capillary sequencing 25423416 PD4115a 6 3972382 3972387 AACAATAAGCAGAGAAGTCAGACTT TTTATA - ATTCGATGGAAAAACATACTTGATT deletion Somatic Roche 454 pyro-sequencing 25795855 PD4115a 22 29171693 29171704 CGAGGTCAGGAGTTCAAGACCAGCC TGACCAATTTGA - TGAAACCCCGTCTCTGCTAAAAATA deletion homo_sapiens_core_58_37c CCDC117 ENSG00000159873 CCDS13846.1 ENST00000249064 Somatic Capillary sequencing 25722824 PD4115a X 106783148 106783152 AGTTGGGGAAGGATTGAGGATAAAG GTAGA - GTTTGAACTAAGCTGTAAAGTGATG deletion homo_sapiens_core_58_37c FRMPD3 ENSG00000147234 ENST00000439554 Somatic Roche 454 pyro-sequencing 25864630 PD4115a 8 313071 313084 TGAGAGGAAAAAACTACCAGGGAGG TAAAGCTCCTCTTC - TAATTTCAGGCAAAAGTAGGGCAGA deletion homo_sapiens_core_58_37c AC136777.1 ENSG00000249868 ENST00000507258 Somatic Roche 454 pyro-sequencing 25617381 PD4115a 14 41612079 41612103 GTTTGATAATCATGCAAATATCTCT GATCTAAACATTTCTATGGTTATTA - GATATTTTTCTTTTTCTAAAATTTT deletion Somatic Capillary sequencing 25611902 PD4115a 15 94469309 94469315 CCCATGACAGCCAGGCTGCTGGGAG CATGAGC - CAATAAAAAACGAGTCCTCTGGGCT deletion Somatic Roche 454 pyro-sequencing 25484874 PD4115a 20 57497051 57497065 ATTGAGATCAGCCAATAGAAATAAG GATCCATGAACCAGA - GATAAGAATTGGTTCTTCTCTTTTT deletion homo_sapiens_core_58_37c ENSG00000234857 ENSG00000234857 ENST00000445014 Somatic Capillary sequencing 25787840 PD4115a 10 83749644 83749645 AAAATGGACAGGAAATGAAAAAATG - A AAAAAAATCTGTCCAGAAGGTTGAC insertion homo_sapiens_core_58_37c NRG3 ENSG00000185737 CCDS31233.1 ENST00000372141 Somatic Capillary sequencing 25592503 PD4115a 18 25308810 25308816 CAACCTAATGGTGAATCATGGAGTA CATGACT - CACCATTTCCTCTATCCAGGAAAAA deletion Somatic Capillary sequencing 25823651 PD4115a 1 169679998 169679999 CTATTTAATATTTACTATGTATATT - ACTATGTATATTT TTAAAGTATTGTTGCTGCTTAATTA insertion homo_sapiens_core_58_37c SELL ENSG00000188404 ENST00000236147 Somatic Capillary sequencing 25517386 PD4115a 5 22917380 22917405 CATAGTCTTTAGACTAGAAGTTAGT GTCATCTTCACTCTATTGCTATTTTG - GTCGCTCTTCATCTACATTACACAC deletion Somatic Capillary sequencing 25593959 PD4115a 18 36251227 36251251 GCGCACACACACACATTCTAAGAGG GTGGGAAATAAATCCAACTAAATAA - GTGGGAAATAAATCCAACTAAAATT deletion Somatic Roche 454 pyro-sequencing 25414000 PD4115a 17 78809098 78809098 TAACATTTTTCATTCTCATTTTGGT C - CTTTACTAAGACATTGAGAAAATAT deletion homo_sapiens_core_58_37c RPTOR ENSG00000141564 CCDS11773.1 ENST00000306801 Somatic Roche 454 pyro-sequencing 25570240 PD4115a 7 36732015 36732060 GACAACTAGTGTTTTCATTACATTT GAGTAGATTAGACTCTGTGGCCTAACCTAACTACTACTTGAAACAT AGACTCTGTGGCCTAACCTAACTACTGCTTGAAACA TTTTTTTTTATGAGAAAATGCTCAG complex Somatic Capillary sequencing 25432741 PD4115a 6 57556039 57556052 GGTCCAGTAGGCAGTGTCCCATTGG GGACTCTGTGTGGA - GGCTTCTGCTTGGTGTTCCAGGCTT deletion Somatic Roche 454 pyro-sequencing 25801076 PD4115a 22 29189579 29189580 ATCACTAGGATTTTTTCTTGAAGAG - TTTA TTATTTATTTATTTATTTATTTATT insertion Somatic Capillary sequencing 25871120 PD4115a 8 42622114 42622114 TTTAAGGCAAATTTATTTGAAACTT C - CTTTTTGTTGTTGAGATGGAGTCTC deletion homo_sapiens_core_58_37c CHRNA6 ENSG00000147434 CCDS6135.1 ENST00000276410 Somatic Capillary sequencing 25653334 PD4115a 6 62022117 62022118 TCTATAACTATATTACTTAATTTTT - T GATTGTTTTTAAATTTTTAACTCAA insertion Somatic Capillary sequencing 25617461 PD4115a 14 42111843 42111871 CTGGCATAGATTCCAGGACTTGAGC CCTGACTCCTGCTTTTGCATTCATAGTGA - CCTGGATCAAATGAAGACTGCCAGC deletion homo_sapiens_core_58_37c LRFN5 ENSG00000165379 CCDS9678.1 ENST00000298119 Somatic Roche 454 pyro-sequencing 25475160 PD4115a 11 96046905 96046905 ACCATATATTTTTAAGGTGTTTTTA G - GAAGTGATCTAGTGTTTTGGGATAC deletion homo_sapiens_core_58_37c MAML2 ENSG00000184384 CCDS44714.1 ENST00000440572 Somatic Roche 454 pyro-sequencing 25627288 PD4115a 20 3374283 3374314 TTTTTACTATTTATGTTTGCTATTG CAAACAATGCTACGGTGAGCAACCTTTTATGT - CCATCTTTGGCACAAACACAAAAGT deletion homo_sapiens_core_58_37c C20orf194 ENSG00000088854 CCDS42851.1 ENST00000252032 Somatic Roche 454 pyro-sequencing 25552799 PD4115a 21 32607406 32607420 AAACGAAGCAGCTGGTAATTCTACA GAGGCTGTTGTACAT - GAGGCCCGGAGAGCAGCCATATGGG deletion homo_sapiens_core_58_37c TIAM1 ENSG00000156299 CCDS13609.1 ENST00000286827 Somatic Capillary sequencing 25570295 PD4115a 7 45051458 45051476 GTAAGCCATCGTGCCCTGCCCTGGC TAACTTTTTAAAAAGTTTT ACTGATAC TGTAGAGTATCAGTATTTTAGTATG complex Somatic Capillary sequencing 25483281 PD4115a 20 46335212 46335234 ACAACTGCTAAACCCTATTGTTAGA AAGAAAAAAAAGAAGTCACAGAC - AAGACATAAACAAGTGGGCGGGTAT deletion homo_sapiens_core_58_37c SULF2 ENSG00000196562 CCDS13408.1 ENST00000359930 Somatic Capillary sequencing 25750132 PD4115a 10 20229774 20229784 TTGTAAATGTTGGATATTCCTAATT TGAGCTATCTC - TGAGCTGTGGGGTGTGTTTAACATT deletion homo_sapiens_core_58_37c PLXDC2 ENSG00000120594 CCDS7132.1 ENST00000377252 Somatic Capillary sequencing 25804756 PD4115a 4 6593995 6594017 GCACTGTTTCTAGCTCCTTTCCATA AATGACTTTCATTTAATCCTCAC - AACAACCTGCTCCACATTCTACCAG deletion homo_sapiens_core_58_37c MAN2B2 ENSG00000013288 CCDS33951.1 ENST00000285599 Somatic Capillary sequencing 25432804 PD4115a 6 57614847 57614856 CATACTCTTTATCTCCTACTTTCTC ACTATCTCTA - ACACAACTCTGGAGTCTGCAGATGG deletion Somatic Roche 454 pyro-sequencing 25809739 PD4115a 4 38633869 38633881 GTTTGCCTCTTCCCCCAGCTCAAAT TTTAAAATAGAGC - TTTATAGCAGAAAAGAATCTCAAGG deletion homo_sapiens_core_58_37c ENSG00000196355 ENSG00000196355 ENST00000436901 Somatic Roche 454 pyro-sequencing 25532484 PD4115a 19 57246355 57246355 AATGGATGTTGGCATCAGATGGGAA G - GGGGGGTCCCCCGGAAGGCAGGACG deletion Somatic Capillary sequencing 25871586 PD4115a 8 38955115 38955120 GCTGGGATTACAACTTGAGCCACTG AGCTTG TTGA GCCTGTTGTCTAGTATTTTAAGTCT complex Somatic Capillary sequencing 25628009 PD4115a 20 7462959 7462983 CCAAACAAAGAAATATTTTAAACTT TTTTAAAAAATTAAAGGAGGTAAAG - AAAATTATCCATGTCAATGCAGTAA deletion Somatic Roche 454 pyro-sequencing 25426872 PD4115a 6 23296441 23296452 AACTCCAGACACACCATCTTTAAGA ACTGTAACACTC - ACTGCAAGTTTCCGTGGCTTCATTC deletion Somatic Roche 454 pyro-sequencing 25609042 PD4115a 15 74182753 74182757 CATGGCTAAAGAGCTCATGTTTGCT GGGCA - GGGAGGCACATGGGTCAATTCATAT deletion Somatic Roche 454 pyro-sequencing 25550333 PD4115a 21 19702993 19703015 TAAAGTATTGAATACACATTCGTCA AATAAACAAACATTTTTAAATTT - AATAAATTTCTCCAAATTGTTTAAA deletion homo_sapiens_core_58_37c PRSS7 ENSG00000154646 CCDS13571.1 ENST00000284885 Somatic Capillary sequencing 25635502 PD4115a 18 4431164 4431181 ATGATTCAAAAAGGACAAACGGAAT GAGAAGGCTCTGTAACAA - GAGACAAACCATTTGGAAAATTCTG deletion Somatic Roche 454 pyro-sequencing 25565321 PD4115a 7 28825171 28825204 AGGAAAACAGAGCTCTGGGAAAACG TCATGTCATTGCTAAAGTCAGACCTTGACCACTA - TCAGGCAAAACTTGAGACCACACTC deletion homo_sapiens_core_58_37c CREB5 ENSG00000146592 CCDS5418.1 ENST00000358569 Somatic Roche 454 pyro-sequencing 25438641 PD4115a 12 62858104 62858105 GATTTGTTAACTTGTAGAATAAAAA - C TATTTTTACCTTTGGTAACTTGCTT insertion Somatic Capillary sequencing 25473472 PD4115a 11 82230866 82230889 TCTTGCCTTCTGCTAGCTTTTGAAA TGTGTTTGCTCTTGCTTCTCTAGT - TCTTTTAATTGTGATGTTAGGGTGT deletion Somatic Capillary sequencing 25461851 PD4115a 9 81711957 81711965 TATGTTTACAATTGTTATATTATAT ATTAACCCC - TTTAACATTATATAAAGTCCTTTGT deletion Somatic Roche 454 pyro-sequencing 25494712 PD4115a 9 32183501 32183509 GGACTAACATGAACTGATACATATT TTTTAAAGA - TTCCTCTGGCTTCTCTGTGGAGATT deletion Somatic Capillary sequencing 25628635 PD4115a 20 11867203 11867203 ATGCCAGGTTTATATATATATTTTT A - AAACTCTGGCCCAGGATACATTTTA deletion Somatic Capillary sequencing 25516985 PD4115a 5 20486174 20486195 TATGAAGGGTTAAAAGAGTTGCTGT ACCAGCGTGGATATAGAGAAGA - ACTTTTCTGCAATCCATAGGATGTG deletion homo_sapiens_core_58_37c CDH18 ENSG00000145526 CCDS3652.1 ENST00000507958 Somatic Capillary sequencing 25776246 PD4115a X 38287941 38287945 AAGGTGTCAGCAATTTTTCTCACCA TTTCT - TTTGCATCATCTGCTGATGCTGCTG deletion homo_sapiens_core_58_37c ENSG00000250349 ENSG00000250349 ENST00000465127 Somatic Capillary sequencing 25473093 PD4115a 11 79035289 79035308 AATTTATTGTTATTGTTTTTAGAGA CAGGGTCTCACTCTGTCACC - CAGGCTGGAGTGCAGTGGTGAGATC deletion homo_sapiens_core_58_37c ODZ4 ENSG00000149256 CCDS44688.1 ENST00000278550 Somatic Capillary sequencing 25468841 PD4115a 9 138538662 138538662 TTTGCCATATCTTGAAATGGCCCTG T - AAAGTTGTCCTTTGTGGGGGAAAAT deletion Somatic Capillary sequencing 25710903 PD4115a 5 111827618 111827619 ATTAGAAGTGAGAGAAACCTAAAAA - A TATGTAGTATACCTCCACTTTATAT insertion Somatic Capillary sequencing 25414683 PD4115a 17 61088885 61088889 CTGAGAAAAGTGTGATAAAATACCA CATTA T TGATTGTGAATTTTTTTTATTTCTC complex Somatic Capillary sequencing 25753584 PD4115a 10 28478565 28478611 TGTAAATGTGTGTTGCTAACTGTAG GGCAAGCACACATAGAAAAAAAAAATTAAGTATAATTGATTTGATAA AACTGTGT AAGAAGAGAGTAAATGGAATAATAT complex Somatic Capillary sequencing 25724171 PD4115a X 121391614 121391618 TGTACATATTTAATGTGAACAATTT GATGA - GCGTGGACATATGCAAACACCTATT deletion Somatic Roche 454 pyro-sequencing 25723579 PD4115a X 115943565 115943613 AATGAGAATAATATAGGTAGCCTTT TTTTTTAGCATAAATAGAAACCATGCTATATATTATTTTAATTTAAAAA - TTATTTACATTTACTGAGTGACTGC deletion Somatic Roche 454 pyro-sequencing 25539684 PD4115a 16 58797383 58797388 GTTAAATAGAAGTGGACATCCTTGA CTTGTT - CTTGATCTTAGGGGAAAAGCATTTA deletion homo_sapiens_core_58_37c AC106793.1 ENSG00000245768 ENST00000500117 Somatic Roche 454 pyro-sequencing 25484712 PD4115a 20 56096378 56096378 AAAACATGAGGAGATAGTCAACACC T - TTCGTCATTAGAGAAATGGAAACCA deletion homo_sapiens_core_58_37c CTCFL ENSG00000124092 CCDS13459.1 ENST00000243914 Somatic Capillary sequencing 25568427 PD4115a 7 50034205 50034215 GGTCAAGCATTCAATATTTCCTAAG GCCCTGTAGAA - GCAGCTGTCTCTCCGAAGGAGAGTA deletion homo_sapiens_core_58_37c ZPBP ENSG00000042813 CCDS5509.1 ENST00000046087 Somatic Roche 454 pyro-sequencing 25605285 PD4115a 15 49598512 49598530 GACTACTTTTTCATCATTTTGGGAA ATAAATAACATAAGTAGAG - ATAGATTTTTATTCCTTTATCAACA deletion homo_sapiens_core_58_37c GALK2 ENSG00000156958 CCDS32236.1 ENST00000327171 Somatic Roche 454 pyro-sequencing 25599838 PD4115a 18 73740030 73740039 AAAATCAGTTTTTAAAAAACAAAGA GGAGCAGGAG - GGAGACTGTGGGATGCTCTTTCATC deletion Somatic Capillary sequencing 25612498 PD4115a 15 97966935 97966940 ATTAACATTTATGTTTATAGTCAAC TGCTTT - TGGAAATAAAAATGCTATGACAGTT deletion Somatic Roche 454 pyro-sequencing 25619899 PD4115a 14 58826178 58826184 CATTGACACATTATTGTCACTCAGA GTCCATC - GTTTACATTAGGGTTCACTGTTGGT deletion homo_sapiens_core_58_37c ARID4A ENSG00000032219 CCDS9732.1 ENST00000355431 Somatic Capillary sequencing 25600695 PD4115a 18 49283166 49283186 CAAACCCCCACATATTTAAATTTAA TAAGTAAAGTTCTCTTGGCAG ATTTAATAAGTAA AGTTTTAAGTATCTGCAGTAGAGGA complex Somatic Capillary sequencing 25822737 PD4115a 1 162584677 162584678 TTAAACTACACAAACTTAATTATCT - T TATTTTTGCAGGTCAGAAGTCTGGT insertion Somatic Capillary sequencing 25529141 PD4115a 19 37242823 37242844 CTACATGTGATGTATATGGGAAGTC TCTGTACTAACCTCACAACTTT - TCTGTAAGTCTAAAACTATCCTAAA deletion homo_sapiens_core_58_37c ENSG00000196761 ENSG00000196761 ENST00000332454 Somatic Roche 454 pyro-sequencing 25608941 PD4115a 15 73367088 73367105 TCTCCAGCATGACTCTCCCCTTTCT GTCAGTCTTACCCCAGGA - GTCCCTGGCCTCCTTCCTCTCCTTG deletion homo_sapiens_core_58_37c NEO1 ENSG00000067141 CCDS10247.1 ENST00000261908 Somatic Capillary sequencing 25625172 PD4115a 14 98531526 98531541 GCTCTGGCAGCTTTATTGTAAGTAA GCGTCAGTGTTAACCT - GCTATATTATTAACGTGTTCCATTA deletion Somatic Roche 454 pyro-sequencing 25514554 PD4115a 5 5255954 5255963 CTATATCAGATCCCTCTTTCTGCTT TCTTGGGCTA - TCCTTTATTTCTAACATCCTAATTA deletion homo_sapiens_core_58_37c ADAMTS16 ENSG00000145536 CCDS43299.1 ENST00000274181 Somatic Capillary sequencing 25521367 PD4115a 5 37540450 37540467 TCTTAAAAGTTAGACCTATCCTGCT GTTATATATAATTCATTT A TCTACTAACATTGTTCTTTTTTTGT complex Somatic Capillary sequencing 25616506 PD4115a 14 36212814 36212814 AAGTGGTTCTCCTGCCTCTGTCTCC T - GAGTAGCTTGAACTACAGGCACACA deletion homo_sapiens_core_58_37c RALGAPA1 ENSG00000174373 CCDS32065.1 ENST00000389698 Somatic Roche 454 pyro-sequencing 25617828 PD4115a 14 45382202 45382213 ATAGACCAATCAGCAGGATGTGGGT GGGGTCAGATAA - GGGAATAAAAGCAGGCAGCTGGTTT deletion Somatic Roche 454 pyro-sequencing 25775491 PD4115a X 30088408 30088416 CACAGAAATATAAAAGATCATCAAA GACTATTAT - GACAAGTATATATTCACAAACTAGA deletion Somatic Capillary sequencing 25426475 PD4115a 6 21230465 21230470 TGGAGTGCAGCAGCGCAATCTTGGC TCACTG - TAGCCTTCACCTTCCAGGTTCCAGC deletion homo_sapiens_core_58_37c CDKAL1 ENSG00000145996 CCDS4546.1 ENST00000378610 Somatic Roche 454 pyro-sequencing 25723969 PD4115a X 119265625 119265625 TGAATCTGGGGTCTTTATAGACACA G - GATGGGAGGCAGAATGGGCCTAGGT deletion homo_sapiens_core_58_37c AC006147.1 ENSG00000249999 ENST00000504192 Somatic Capillary sequencing 25553520 PD4115a 21 37337352 37337365 TTGCCTCTGGTGGTTACGAGTTGCC TTCTAGTTTTATAA - TTCTGGAATCTCACTATCCCCATTG deletion Somatic Capillary sequencing 25474373 PD4115a 11 89391514 89391514 TGTGTATATGTATATGCTTTTCTGT G - GGGGGATGCTTCTGTAGCTTCAGCT deletion Somatic Roche 454 pyro-sequencing 25419732 PD4115a 17 61389598 61389599 ATGGATTTTAAAAGAGTAGTTTTTT - T TTCTACCAAAAAGACATATGCATGC insertion homo_sapiens_core_58_37c TANC2 ENSG00000170921 CCDS45754.1 ENST00000424789 Somatic Capillary sequencing 25601953 PD4115a 15 24462931 24462931 AATTGTAGACAAATGATAAAACTGG A - AAGCAATGAACAGGGTGAGAATCCA deletion Somatic Roche 454 pyro-sequencing 25543652 PD4115a 16 87532504 87532522 GTATTCAAATATATTTATGCACACA TACTTTTACAAAAAAAAAG - TATACGACACAAAAATAGGATGGTA deletion Somatic Capillary sequencing 25461852 PD4115a 9 81712352 81712352 TTGTCACCAGGTATTAAGCCTAGTA C - CCACTTAGTTACTTTTCCTGATCCT deletion Somatic Roche 454 pyro-sequencing 25720175 PD4115a X 80031127 80031127 ATGACAACTAAAAAACACCTTTTAC T - TTGGCAGGATACTTTTGTGCAAAGA deletion homo_sapiens_core_58_37c BRWD3 ENSG00000165288 CCDS14447.1 ENST00000373275 Somatic Roche 454 pyro-sequencing 25516207 PD4115a 5 16049187 16049199 TAAAGGTGAAAAGAAAAGTAAAAGA ACAGGGTCATTCT - GCATTTCTTTCAGTAAATTTAATTT deletion Somatic Capillary sequencing 25515186 PD4115a 5 9297131 9297136 TTCTGGGAGACAACCAAAAAGGTGC AGCTAA - AGCTCAGAGAAGAAAATCAGCATGG deletion homo_sapiens_core_58_37c SEMA5A ENSG00000112902 CCDS3875.1 ENST00000382496 Somatic Roche 454 pyro-sequencing 25562378 PD4115a 7 8915194 8915204 TGGTTTTCAAAAAATGTTCAAAGTT ACCATATAATC - ACTAATTTCCTTGCTTCTTATAAGT deletion Somatic Capillary sequencing 25612417 PD4115a 15 97521166 97521174 TGGTTGACCTCGGTGGTGGGGGGGA AAGGAATCT - AAGTTAAATGCACAGCCTATCTTCT deletion Somatic Roche 454 pyro-sequencing 25804860 PD4115a 4 7173534 7173534 TCAAGTGATTTGCCTACCTCAGCCT C - CCAAAGTGCTGAGATTATAGGCATG deletion Somatic Capillary sequencing 25607948 PD4115a 15 66118439 66118462 ACTCGGTGTCTGAGGAGTTTTGTCT GTGGCTTGTCCTGCTACAACGAAA - GTGAAGAGGGAAAAATATAGTAAAG deletion Somatic Capillary sequencing 25725253 PD4115a X 132865063 132865078 AAGAAATGATTTTTTAAAAACCACA AACTTTAGGTAAGAGG - AAGGAGAGACAAGGATAAGTGAGGA deletion homo_sapiens_core_58_37c GPC3 ENSG00000147257 CCDS14638.1 ENST00000370818 Somatic Roche 454 pyro-sequencing 25520966 PD4115a 5 45570542 45570542 TATTAACAGTCTTTTGGCAATAATC T - TTTCACCACCATACTACCTTACCAG deletion homo_sapiens_core_58_37c HCN1 ENSG00000164588 CCDS3952.1 ENST00000303230 Somatic Capillary sequencing 25859404 PD4115a 16 34683047 34683075 TGAGACTGACAATTTTAACTGTTGG CTGTATGGTGGGCCCTGTAATAACAATCT - CTGTACCATCAAAGGGCATTATAGA deletion Somatic Roche 454 pyro-sequencing 25874439 PD4115a 8 20819837 20819838 TGTACCCCAGAACTTAAAGTATAAT - AATA ATAAATAATGAATCCAACTCTTAGG insertion Somatic Capillary sequencing 25502690 PD4115a 12 4064628 4064628 TTTTTCTTTATATATCTTTAACTTT A - AAAAAAAATACTAAGCTATTGTCTC deletion Somatic Capillary sequencing 25597226 PD4115a 18 58958296 58958304 GTGAGCTTCCCTGGTTGGCTACACT TTGCACATG - TTGTCACACAGCAATGCTGGGAAAG deletion Somatic Capillary sequencing 25859401 PD4115a 16 34611241 34611250 GGTTTGTGAGGTAATGCATATGCCA GTTATCTTGG - GTTAACCATTCCATAATGTGTGCAT deletion homo_sapiens_core_58_37c ENSG00000237113 ENSG00000237113 ENST00000425453 Somatic Capillary sequencing 25612821 PD4115a 15 100008083 100008115 TTTCTCTGGGGACATCTTGGAGGGA CTCCCAGCCAAGGAGCCCTGCCCACACCCCAGG - CTCCACCATCTTTACTTTCTGCCCT deletion Somatic Roche 454 pyro-sequencing 25496481 PD4115a 9 29235574 29235581 ATGCTGCCTCTCTGAATACAAATGT CATTCATT GAA TACTTTGTGAAGTCTTCTCTAAATT complex Somatic Capillary sequencing 25492719 PD4115a 9 18381633 18381633 TTTCTTCTTTTTCACAGAGAAGGAG A - CGGTTCCTTTAATGAAATGCGTGTA deletion Somatic Roche 454 pyro-sequencing 25627850 PD4115a 20 6343762 6343767 ACTGCCCATTTTGGACTTTCTCTAG AACTTC - AACTCTCCTGTCTTTATTAGGAAAG deletion Somatic Capillary sequencing 25588015 PD4115a 13 90706920 90706921 AGATTAACATTATGAGCTACATTTT - T TCAGCATTAGACTGTCTAAATGCTT insertion Somatic Capillary sequencing 25550398 PD4115a 21 20140454 20140485 AGATCACTGCTAAGAGAAGTAGTTA ACTGCAGAATTAAATAGCCTGGCTCAGTAGTC - ACACCAGAGGTATCTTTGGCAAGTT deletion Somatic Capillary sequencing 25431266 PD4115a 6 49871756 49871768 GCTCAGGGATGTCTTTTTTTTTGGC TCCCAATGAGAGT - TCCAAGTGACAATAGAACCTTAGCT deletion Somatic Roche 454 pyro-sequencing 25670142 PD4115a 11 24799845 24799848 GGCATCGTGATGCATGCCTGTAGTC TTAG - CTATTCAGAGGCTGAGGTGAAGGGA deletion homo_sapiens_core_58_37c LUZP2 ENSG00000187398 CCDS31446.1 ENST00000336930 Somatic Roche 454 pyro-sequencing 25599297 PD4115a 18 70127745 70127760 TCCAATATGAACTGTCCCTCCCTCT CAGCCAACCTAAGTGG - CACTTCTAAGTGCAGGGGAATATGT deletion Somatic Capillary sequencing 25540172 PD4115a 16 61747272 61747278 AATGTCCTTCAAAGAGGATTTTCTG AACTAAC - TGTTATTGTTAAAGTTGGTACAGGC deletion homo_sapiens_core_58_37c CDH8 ENSG00000150394 CCDS10802.1 ENST00000299345 Somatic Roche 454 pyro-sequencing 25805649 PD4115a 4 12563778 12563795 GGGATTTTACAATTTCCCAAGGTCT CTATAGCAGACAATTTTG - CTCACATAGCTGTAATTTTGCCAAC deletion Somatic Roche 454 pyro-sequencing 25857442 PD4115a 16 24286013 24286026 TGATGAAGGTAGTCAAAACCTTAAG GAATAGATGTTCTA - GAATATCCCCGAGATGAGCTACATC deletion homo_sapiens_core_58_37c CACNG3 ENSG00000006116 CCDS10620.1 ENST00000005284 Somatic Roche 454 pyro-sequencing 25716495 PD4115a 5 164322154 164322155 TGTAGCCAAATCTTTTGGATTTTCA - A AAAAATATTTTTGTCCATTTCTTCT insertion Somatic Capillary sequencing 25608402 PD4115a 15 69118412 69118412 ATGTTTTTACCATTTGCAAATGGCA T - TTATAACTTTCGTATACATAGTAAA deletion Somatic Capillary sequencing 25518050 PD4115a 5 26935878 26935894 CACTACTGGGTATCTAACCAATGAA AAAGAAGTCATTATATG - AAATAGACACATGCACATGCATGTT deletion homo_sapiens_core_58_37c CDH9 ENSG00000113100 CCDS3893.1 ENST00000231021 Somatic Roche 454 pyro-sequencing 25725083 PD4115a X 129954308 129954308 AACATGTGTTAGTGAGAATCTGGAG A - AAAGGGAGTGCTTGCACATTGTTGG deletion homo_sapiens_core_58_37c ENOX2 ENSG00000165675 CCDS14626.1 ENST00000338144 Somatic Capillary sequencing 25508132 PD4115a 12 7383829 7383835 CCCTCTGTTTTTCTGCATCTGTGTG TGCTGAC CA TCCATTTGGCCACATGCCAGTTGGT complex Somatic Capillary sequencing 25444629 PD4115a 12 112678238 112678239 AAGTAGCACTGAATACTGTAAGTGC - TTTTC TTTCTTTTCTTTTCTTTTCTTTTTT insertion homo_sapiens_core_58_37c C12orf51 ENSG00000173064 CCDS44978.1 ENST00000377560 Somatic Capillary sequencing 25426250 PD4115a 6 19979080 19979080 CACTTGAGCTATTGCACGATCTCCC T - TTTTTTTAATTTTATTTTGAGACAG deletion Somatic Capillary sequencing 25495543 PD4115a 9 37557344 37557351 CCCTTCTGAGCCTTACCCCAGACCT CTTTACCC - CTTCGGAGGCCTTGGATGGCTCTGC deletion homo_sapiens_core_58_37c FBXO10 ENSG00000147912 CCDS47966.1 ENST00000432825 Somatic Roche 454 pyro-sequencing 25425589 PD4115a 6 16524898 16524898 GTACACAGAAGAGACTGAATAAAAC A - AAAAGGCATTATCACCATTTGGCAC deletion homo_sapiens_core_58_37c ATXN1 ENSG00000124788 CCDS34342.1 ENST00000450222 Somatic Capillary sequencing 25628368 PD4115a 20 10084227 10084232 TCTCATATTTGGAAAGCTAGAAGGC CAAAAT - CAAGGTGTCGACAGGGTTGATTTAT deletion Somatic Roche 454 pyro-sequencing 25802007 PD4115a 22 36177335 36177336 AAACTAAGCATATTATTGGTATGTT - A CTGAGTTTGGTAGGTGAGTAGGGTG insertion homo_sapiens_core_58_37c RBM9 ENSG00000100320 CCDS13921.1 ENST00000405409 Somatic Capillary sequencing 25610861 PD4115a 15 87381468 87381485 CCTTTGAAAGATTTTACATTCTATT CCTGCTCTGAACACAGTG - CTCTTTATATAAAAAGACAAATCAC deletion Somatic Roche 454 pyro-sequencing 25473748 PD4115a 11 84381778 84381785 ACACAATGACTGAGTGGGTAGAGCC AAGATTTG - AACTTAGTCCTGTCTGATTCAAAGC deletion homo_sapiens_core_58_37c DLG2 ENSG00000150672 CCDS41696.1 ENST00000398309 Somatic Roche 454 pyro-sequencing 25496323 PD4115a 9 2916469 2916475 AGCCTTGGCAAGTGCTCCTGTGAGC TGCTGGA AC TTTCCTTCCTTCCTTCCTCCATGGT complex Somatic Capillary sequencing 25795862 PD4115a 22 29302628 29302647 TTAACACATGTTCGGTTGGTGTCTG TTGCTACAAAATTGTGACTC - TCAAAGGGTTCATAGTCCTGCAAGA deletion homo_sapiens_core_58_37c ZNRF3 ENSG00000183579 CCDS42999.1 ENST00000332811 Somatic Roche 454 pyro-sequencing 25426076 PD4115a 6 19055549 19055563 GGAGCATACCTCAAAATAATAAGAG CCATCTATGACAAAC - CCACAGCCAACATCATACTGAATGG deletion Somatic Roche 454 pyro-sequencing 25464122 PD4115a 9 100432930 100432936 CCTATAAGAATCTCTGAGAGTATTC ATGGCTT - ATAGAGGAACACATAGACAAGAGTA deletion homo_sapiens_core_58_37c NCBP1 ENSG00000136937 CCDS6728.1 ENST00000375147 Somatic Roche 454 pyro-sequencing 25565525 PD4115a 7 30386677 30386691 ATCATTGTTGCCTCCTTCCTTCCTG TCTTCCCTCATTTAT - TCTGTCCCTATAGTAGGTGCCTATT deletion homo_sapiens_core_58_37c ZNRF2 ENSG00000180233 CCDS5426.1 ENST00000323037 Somatic Capillary sequencing 25854145 PD4115a 16 3807189 3807189 CACACCCGGCCTGAAATTGGGCCAC T - TTTTATTGGAACTTCAGGAAAGAAA deletion homo_sapiens_core_58_37c CREBBP ENSG00000005339 CCDS10509.1 ENST00000262367 Somatic Capillary sequencing 25540413 PD4115a 16 63458692 63458701 AAACTGCTAGCAACAAATCCTTCCT AATGTCAATG - AATTGCTAGAGTGAAGGGTGAACTA deletion Somatic Capillary sequencing 25530130 PD4115a 19 44721015 44721021 GGGCAACAAATTACTAAAAAGAAAC CTTAAGT - CAGATTTCGGCTTTTCAGAAATTAA deletion homo_sapiens_core_58_37c ZNF227 ENSG00000131115 CCDS12636.1 ENST00000313040 Somatic Capillary sequencing 25432037 PD4115a 6 55000067 55000067 AGCAAAACACTTAGACTTTTGTTGT A - AATAAGGAGAAAAAGATAATTTTGT deletion Somatic Capillary sequencing 25551489 PD4115a 21 25333132 25333132 GGAATTGATTTTATATTTGGCTTTC T - TTTTGTTCATCCTGATTGAAAGTGA deletion Somatic Capillary sequencing 25632647 PD4115a 20 11187774 11187775 ATGAGCAGGTCATGTACATAATTCT - T TTTTTTTCCCTGAAGGCCAAGCATA insertion Somatic Capillary sequencing 25850463 PD4115a 17 21930769 21930790 GTATGTTGTGTATATATATATACAT ATATACATGTATATATATATAC - ATGTATATATGTATATATATATACA deletion Somatic Capillary sequencing 25598056 PD4115a 18 63758740 63758746 TTTCAATTGTAAAGTTTCAGAAATA AATGATT - AACAACTGTTTTCATCAAGATTACT deletion Somatic Capillary sequencing 25407141 PD4115a 17 39681143 39681173 AGGCCAGCTCTTCCTTCAGGCCTTC GATCTGCATCTCCAGGTCGGTCCTGGCCAGG - GTCAGCTCATCCAGCACCCTGCGCA deletion homo_sapiens_core_58_37c KRT19 ENSG00000171345 CCDS11399.1 ENST00000361566 c.582_612del31 p.L195fs*3 Somatic Capillary sequencing 25606684 PD4115a 15 58479070 58479070 AACTTATCCATTTTTTAAATAGTTG C - TTTAAGAGTTAGAATTGTAACATTC deletion Somatic Roche 454 pyro-sequencing 25609862 PD4115a 15 79973489 79973506 GCTCTTAAGGGAGAATCTTGTTAGA GCAAAACAGACAATGCCG - GCAGAGAGAGGGAATTTTACAATCT deletion Somatic Capillary sequencing 25696512 PD4115a 3 134791426 134791427 GACTTCCCGCCGATCCCCACCACCA - CCTCACT CTCACTCCTGCCTGGGGGCCTTTGC insertion homo_sapiens_core_58_37c EPHB1 ENSG00000154928 CCDS46921.1 ENST00000398015 Somatic Capillary sequencing 25612805 PD4115a 15 99853405 99853447 TTGGAACTAAACAAGGACAATTTAT AATGATAAAAGGATCAGTATATTGGGAAGATATAAGAATTATA - AATGTAGATGCACTTACCAAAAGAG deletion homo_sapiens_core_58_37c LRRC28 ENSG00000168904 CCDS10380.1 ENST00000301981 Somatic Capillary sequencing 25490487 PD4115a 9 2667772 2667772 AGCTCCCATAATTCCCACATGTTGT G - GAAGGGACCTGGTGGGAGATAATTT deletion Somatic Capillary sequencing 25612945 PD4115a 15 100799436 100799436 TCTTTCAGACCAAATATAATTACCA T - TTGGAAAATCAGCTCCATTTACTTA deletion homo_sapiens_core_58_37c ADAMTS17 ENSG00000140470 CCDS10383.1 ENST00000268070 Somatic Roche 454 pyro-sequencing 25417768 PD4115a 17 46501352 46501353 AAAAATAGGGTATATAACTTGAAGG - A AAAAAAAACTCACTTAACGATTGTC insertion homo_sapiens_core_58_37c SKAP1 ENSG00000141293 CCDS32674.1 ENST00000336915 Somatic Capillary sequencing 25859389 PD4115a 16 34414326 34414335 ACTTGTATTTTCTATCTCCTGCCCT AGAATTATCC - ACTGTTACAAGTAGCCCTGGTTCTT deletion Somatic Roche 454 pyro-sequencing 25610297 PD4115a 15 83429852 83429855 GTCTTCATCTGTTATCGGAGGGGAA GTTG - GTTTTCCCACTTATGCTTGGGCATG deletion homo_sapiens_core_58_37c SCARNA15 ENSG00000186628 CCDS45332.1 ENST00000334574 Somatic Capillary sequencing 25751238 PD4115a 10 27630366 27630389 ATTACTCACTACATTAATGAAAGAG TGGCCTATTTGAATAGAAAGAGCT - TGGCCTTTGGACTCAGTTCAACTTG deletion Somatic Capillary sequencing 25564906 PD4115a 7 25447792 25447792 TCTTCACGAACATCAACATCACTGG C - CACAATGGCCTATGCTGAGGTGGAT deletion Somatic Roche 454 pyro-sequencing 25561561 PD4115a 7 3926252 3926252 TATATTTTCCACTTGACCCTGCCTC A - AAAGTTGGCTTTTGGCCAGACATGG deletion homo_sapiens_core_58_37c SDK1 ENSG00000146555 CCDS34590.1 ENST00000404826 Somatic Capillary sequencing 25734248 PD4115a X 140291851 140291852 CATTGCTTGAGCCATCATTGTAGAG - GATAAAGT ATAAAGCTCAGTTCCCACATCTGGA insertion Somatic Capillary sequencing 25773447 PD4115a X 9356301 9356301 TAATGTTAGTTCCGGGCATGAATTT C - CACAGGGATTTTCTTTTCTTTTTGC deletion Somatic Roche 454 pyro-sequencing 25561578 PD4115a 7 4251931 4251938 TCAGATGCCATTCACTGTAAGATTC ATCATTAT - TTTATGAAGTGCTCAGAAAGAAAAA deletion homo_sapiens_core_58_37c SDK1 ENSG00000146555 CCDS34590.1 ENST00000404826 Somatic Roche 454 pyro-sequencing 25612443 PD4115a 15 97656609 97656622 GTATACTTTCTTATTTATTAAAAAC TCCAGCTGAGTTTA - TTCTTTTCAAATAATCGAATCATAG deletion Somatic Capillary sequencing 25627330 PD4115a 20 3618321 3618332 ATGATATGTGAACGGCCGTTCACCA TGTGCTAGGCGC - TGTGCTGTAGTATCTCATTTGATCC deletion homo_sapiens_core_58_37c ATRN ENSG00000088812 CCDS13053.1 ENST00000262919 Somatic Capillary sequencing 25520555 PD4115a 5 42687057 42687078 CATCGTCTCAGCCCAAAATCTCCTT AAGCTGATAAGCAACTTCAGCA - AAGTCTCAGGATACGAAATCAAAGT deletion homo_sapiens_core_58_37c GHR ENSG00000112964 CCDS3940.1 ENST00000230882 Somatic Capillary sequencing 25713309 PD4115a 5 133080011 133080012 GGAATCCACTCGTTCCTCTAAGACC - AGTCAGGAC AGTCAGGACCATGATTCTGTGGTTT insertion Somatic Roche 454 pyro-sequencing 25838442 PD4115a 19 20058901 20058908 CTCCCAAGTACTGAGCACCTTTTCT CCTTCCCA - CATCCAACTACTCCATGCTCTTTTT deletion homo_sapiens_core_58_37c ZNF90 ENSG00000213988 ENST00000427401 Somatic Capillary sequencing 25592097 PD4115a 18 22208209 22208214 TAAACAAGAAGGAGGGATTTCCAAG GGAGCA - GAGCATTAATAAGGTAAGATTTTAA deletion homo_sapiens_core_58_37c AC022884.1 ENSG00000246302 ENST00000500155 Somatic Roche 454 pyro-sequencing 25626631 PD4115a 14 85076673 85076676 AAGGCCACAACAATTTAGCAAACAA TAAG AGT TCCTTAATCAGAAACACATGGTTTT complex Somatic Capillary sequencing 25491978 PD4115a 9 13345687 13345699 TTCACTTTGTATTTTACTGCCCCTA TAATATTTTTATT - TTATAGTAAATAATTATCTTTTTCA deletion Somatic Roche 454 pyro-sequencing 25414625 PD4115a 17 51553676 51553684 AGAGTGCTAAAAGATACTTCCCACT GATTTCTAC AAAAGA TACGGTATCTGTATCTAACCTTTAA complex Somatic Capillary sequencing 25725220 PD4115a X 132266497 132266517 CTTTTGGTTACCTGTACATACCTTT ATCAGATAATAAGGCCACTTG - ATCACCTGGAGTTAAAGCACATGGT deletion Somatic Roche 454 pyro-sequencing 25483754 PD4115a 20 49629572 49629572 TCACCAGCCCTCGACCGGGTGCGGT G - GCTCAGGCCTGTAATCCCAGCACTT deletion homo_sapiens_core_58_37c KCNG1 ENSG00000026559 CCDS13436.1 ENST00000371571 Somatic Capillary sequencing 25723213 PD4115a X 112433684 112433704 TGGTTTTATAAGCATCTGGCATCTC CCTTGCTTGCACTCCCTCCAT - CCTGCCACCCTGCGAAGAAGGTGTC deletion Somatic Capillary sequencing 25493430 PD4115a 9 24063392 24063402 AGGTCTCTATTGGTAGCAGTCTGTG GCTACTACAAT - GCTTTCTTTTCTAACCTGCTTTCCT deletion Somatic Roche 454 pyro-sequencing 25698774 PD4115a 3 153535411 153535412 AGTAATTTTAGAAATTATTCTAAGA - ATTTATTC TTTATTCATTCAACTTGGAAGATAT insertion Somatic Capillary sequencing 25629133 PD4115a 20 15147528 15147546 ATTAAATTTAAGTATTAACTTATTA AATTTAAGTATTAAGTATT - AATTTAAGTATTTAATTTAAGTATT deletion homo_sapiens_core_58_37c MACROD2 ENSG00000172264 CCDS13120.2 ENST00000217246 Somatic Capillary sequencing 25612172 PD4115a 15 96154189 96154208 TGCTGACTTTTTCCTTTATTCAGTT ACCTTGAGAAGGAGCGTTCA - ACTTTATTCTTTGTGTAGCTAGAAC deletion Somatic Roche 454 pyro-sequencing 25514457 PD4115a 5 4591417 4591417 TTCCTTCCAATTGGCAGTGCATTTT T - CAAAGCCTGTATATCTACATAATAT deletion Somatic Capillary sequencing 25777382 PD4115a X 51092994 51093018 ATAGGATGTACATATTTTCCAGGAT TGGCCAGGTCTGGTACCTCTGGCTA - TGTGTCCCAAAGCTCCCTTTGCCAC deletion Somatic Capillary sequencing 25475905 PD4115a 11 100908307 100908313 TAATATTCCATTCATTCAGTTTAAA AACTTAG - AACAAGGAATCTAAAGTATTGTCCT deletion homo_sapiens_core_58_37c PGR ENSG00000082175 CCDS8310.1 ENST00000325455 c.? p.? Somatic Roche 454 pyro-sequencing 25515841 PD4115a 5 13508541 13508541 ATCTAAGAGAAAAATCTCTCACCCT G - GGGGTTATATGTACTCTGCTTCCCA deletion Somatic Capillary sequencing 25744444 PD4115a 2 77634356 77634357 GTGCTCATTTGAAAACAATTTGAAA - CAATTTGAAAA GGGACAAGTGAAATAATATTTGATT insertion homo_sapiens_core_58_37c LRRTM4 ENSG00000176204 CCDS46346.1 ENST00000409093 Somatic Capillary sequencing 25592516 PD4115a 18 25457148 25457154 AGGTTGCTATGGACTTCACACTATT CTGAGCA - CTGGTAATCTAGAAATGAACAAAAA deletion Somatic Roche 454 pyro-sequencing 25561613 PD4115a 7 4416244 4416248 TGCTCTGTCTATGGAGTGGACATTC TTTCA - TTTCTTTACTTTCTTAATAAACTTG deletion Somatic Roche 454 pyro-sequencing 25469729 PD4115a 9 98140050 98140060 ACCAACACTGGGTATAGTCAGTCCT CTTAATCGTAG TAATGATA TCATTTTAATGATATGTACTGGTAT complex Somatic Capillary sequencing 25594679 PD4115a 18 41809615 41809615 AGAAAAATAAAGATCCTGGGTTTTT G - AGGGCCCCTTTTTAGGAACAGAGGC deletion Somatic Roche 454 pyro-sequencing 25406222 PD4115a 17 33167625 33167629 TGGCTTCCTGCTGCCCTCCCAAATA CCAGT - CCTCAAGATGGGAAGAAAGTCATCA deletion Somatic Roche 454 pyro-sequencing 25654164 PD4115a 6 67681938 67681939 TCTCAATTGATGGAAATCTCAACAT - A AAAAAATAATAATAATCACAGTCTA insertion Somatic Capillary sequencing 25530410 PD4115a 19 46237737 46237746 GTCTGGGGTATCTCAGTATTAGAAT TTAGGGTTTG - TAGGTTTGGGAGGGCTCCTTTTTTT deletion homo_sapiens_core_58_37c ENSG00000237452 ENSG00000237452 ENST00000457052 Somatic Capillary sequencing 25475729 PD4115a 11 99595527 99595535 AACACAGCAGGAAGACTAAAGGAGT GAATGTCCC - CTTGTGTTATCTGGCTGTTTGATGA deletion Somatic Roche 454 pyro-sequencing 25432166 PD4115a 6 55808787 55808796 AATGGTCCTTTCAACCAAATAATCT CTCATTTATC - CTAGTAAAATCCTGGATTATGATTT deletion Somatic Capillary sequencing 25413731 PD4115a 17 77050262 77050283 GGTACAGAGTGGGACCCTGTCTCAG AAAAAAAAAAAAAGAAAAAGAA - AAAAAAAAATAAACTAAGAATTTGG deletion Somatic Capillary sequencing 25410751 PD4115a 17 61089554 61089554 CACCACACCTAGCTAATTTTTTTTT A - AATTTTTTGTAGAGATGAGATCTCA deletion homo_sapiens_core_58_37c TANC2 ENSG00000170921 CCDS45754.1 ENST00000424789 Somatic Capillary sequencing 25532722 PD4115a 19 58433523 58433535 CAGGGTCATTCTTAGGGTGTGCTTG AGTTACTGCTGTC - AGATATATCTGTTATACAGTGTCGA deletion homo_sapiens_core_58_37c ZNF418 ENSG00000196724 CCDS42642.1 ENST00000396147 c.? p.? Somatic Capillary sequencing 25484901 PD4115a 20 57668893 57668909 TTCTAGGCGCTTAACATATAATTAC CAATTTAATTATCTCAA - CAATTCTAGCAGCAAATTTTATTAT deletion Somatic Roche 454 pyro-sequencing 25598884 PD4115a 18 67873629 67873629 AAAATAAAGGCGGGACGTGGGGGTA T - GATTTGCTGAATGGTACCAAAGTTG deletion Somatic Roche 454 pyro-sequencing 25774552 PD4115a X 21805791 21805799 CCTAAGAGAGAACACGTGGCTGGGC CCAGGAGTT - CCTTTTACTTCACTTGGGACAAATC deletion Somatic Roche 454 pyro-sequencing 25612557 PD4115a 15 98362120 98362127 TGCTGAGCCTTTCAATCAGACAGTA TAACTTAG - TAATTCTTGGTTGGTTTGGTTCCAG deletion homo_sapiens_core_58_37c AC027708.1 ENSG00000251209 ENST00000503768 Somatic Roche 454 pyro-sequencing 25615546 PD4115a 14 29420221 29420221 TAAGTACTTTTTTCTTCCACATATC A - AAAATCTTGCTACTCTGCAGTTGAT deletion Somatic Roche 454 pyro-sequencing 25540447 PD4115a 16 63654429 63654432 GGTGGTGTGCACCTGTAATCCCAGC TGCT - TGGGAGGCTGAGGCAGGAAAATCGC deletion Somatic Capillary sequencing 25796074 PD4115a 22 30539336 30539341 AATAATTTTCTTTAGTATTTCCTGT AAGATG - AATCTGCTAGCAAAATTCTCTCAGT deletion homo_sapiens_core_58_37c HORMAD2 ENSG00000176635 CCDS46683.1 ENST00000336726 Somatic Roche 454 pyro-sequencing 25597656 PD4115a 18 61502805 61502821 CCTTTCTACTCCCAACAAGTAGAAT CATGAAAGTTAATTGGC - CATGACTTTTTATGTGGTGCCTTTG deletion Somatic Roche 454 pyro-sequencing 25538338 PD4115a 16 49738150 49738150 AGGAGAAGGGAAGAATCTTCGCTAG A - ACCCCCTTCTAGGGCATCTCAACTC deletion homo_sapiens_core_58_37c ZNF423 ENSG00000102935 CCDS32445.1 ENST00000262383 Somatic Capillary sequencing 25752938 PD4115a 10 37527765 37527768 AAAGCCTCCTTCCTTTATCTGATAT TGAG - TTATTTCCTTTACAAGACCTCTCTA deletion Somatic Roche 454 pyro-sequencing 25483158 PD4115a 20 45696591 45696598 GCCCTTGAAAAATGTTGTGCCATTT CCTTCCGG - CCTCCATGGTTCCTGATGAGAAATC deletion homo_sapiens_core_58_37c EYA2 ENSG00000064655 CCDS13403.1 ENST00000327619 Somatic Capillary sequencing 25564478 PD4115a 7 22832206 22832222 TATCCAAACTGAAACACAGAGAGAA AAAATAACAGTCACCTT - AAATATATTATTTGGGAGATACTCC deletion Somatic Capillary sequencing 25865326 PD4115a 8 4414896 4414899 ATGCCTTGATATGCCAAGATATAAT TTGA - TAGCATTATCTAAGAATTCACAGCA deletion Somatic Roche 454 pyro-sequencing 25494229 PD4115a 9 29235583 29235587 CTCTGAATACAAATGTCATTCATTT ACTTT - GTGAAGTCTTCTCTAAATTTACCAG deletion Somatic 25569079 PD4115a 7 54120331 54120375 ATAAACATTTTACTTTATTATTTAA CAATCTTTAACTTTCTTTTCCCTAATCTTTTACTTTATTATTTCC - CAATCTTTAACTTTCTTTTCCTATT deletion Somatic 19924334 PD4088a 7 36440468 36440469 GGAGCTCAAAGATGTGCTTTTGTCT - A TTTTTTTTAAAGCTCTTTAGGTAAT insertion homo_sapiens_core_58_37c ANLN ENSG00000011426 CCDS5447.1 ENST00000265748 Somatic Capillary sequencing 19868080 PD4088a 10 66458140 66458141 GTGCCCGTCAACACTGGGTTTGATT - A AAAAATATGCTTCATATACACCATG insertion Somatic Capillary sequencing 19770531 PD4088a 12 75683826 75683827 TTTAAAACAGAAAAATACAGTTTCA - T TTATCACCAAGAGAATAACCTAAAT insertion homo_sapiens_core_58_37c CAPS2 ENSG00000180881 CCDS9008.2 ENST00000409445 Somatic Roche 454 pyro-sequencing 19773530 PD4088a 12 100432130 100432131 TGTCATCAGACATTTTCTTTTTTTT - T AGATGGAATTTCGCTCTTGTTGCCC insertion homo_sapiens_core_58_37c UHRF1BP1L ENSG00000111647 CCDS31882.1 ENST00000279907 Somatic Capillary sequencing 19312678 PD4088a 1 98221818 98221819 CAGCAGCCATACCACAAAGCCAAAC AT - AAACTGATCTCCATAGATACCCCAT deletion homo_sapiens_core_58_37c DPYD ENSG00000188641 CCDS30777.1 ENST00000370192 Somatic Roche 454 pyro-sequencing 19570310 PD4088a 15 100232167 100232167 TATTTATCGCCCTTAGCTTCCTGTA G - AAAAAAAACTAGAATATATAATCAA deletion homo_sapiens_core_58_37c MEF2A ENSG00000068305 CCDS45362.1 ENST00000354410 Somatic Capillary sequencing 19496969 PD4088a 18 22205994 22205994 CCCATCAAACCCTCACCCATACTCT A - AAACCCACCTGAAATACCACTTAGT deletion Somatic Capillary sequencing 19846868 PD4088a 14 73514296 73514297 CTGTCTCAGAAAAAGAAAGAAAAAA - A AAATATAATTGGTATACCTCTTTGG insertion Somatic Capillary sequencing 19698610 PD4088a 5 110234543 110234544 TAGGTATGTCATATTTTTACTTGAT - T TTTTTTTGCCTTAAATTAATGTTCC insertion Somatic Capillary sequencing 19588469 PD4088a X 28141565 28141566 AATTTTGTTCTGTTATTTCTTTTTT - T ATGAATTTTCTCCACCATCTTCTTC insertion Somatic Capillary sequencing 19584009 PD4088a X 31147431 31147431 TAGGATTTCTGTTATTTTATAAGTC A - AAAAAATTCAAATGGCCACACTTGC deletion homo_sapiens_core_58_37c DMD ENSG00000198947 CCDS14233.1 ENST00000357033 Somatic Capillary sequencing 19543239 PD4088a 6 20983482 20983485 AGACTGCAAAGATCCCATTAATTTA TTAT - TTAATTTTAAGTAATGTAATAAGAG deletion homo_sapiens_core_58_37c CDKAL1 ENSG00000145996 CCDS4546.1 ENST00000378610 Somatic Capillary sequencing 19907519 PD4088a 16 63457568 63457569 AAAGTTATAAAGTGCTATTGAATTG - A AAAAAACTTATTATATTAATCAATT insertion Somatic Capillary sequencing 19551627 PD4088a 6 9287119 9287120 GAAACTAGTGACGAATATAGTAAGC - T TTTTTTTCATTCTTCACTTAAATTG insertion Somatic Capillary sequencing 19844853 PD4088a 14 56218746 56218747 TTTTTCACAAAAACATAATTTAATA - T TTTTTTTTGGAAAGAAGTTAAAAAA insertion Somatic Capillary sequencing 19403916 PD4088a 2 63956774 63956775 AAACAAAGCAAAACAAAACAAAAAA - A CCAGAAATATTGCACAACTCAATTT insertion Somatic Capillary sequencing 19324937 PD4088a 1 74038596 74038597 TGTGTACTGACAAAATTCTTTTTTT - T ACTAGAAAGTACTGATTTGTAATTT insertion Somatic Capillary sequencing 19813858 PD4088a 9 117484154 117484157 ACTCTTTGTCAAAGGATTACACAAA AAAC - AAACAATGATGCAGTGAGGTAACTG deletion Somatic Roche 454 pyro-sequencing 19550418 PD4088a 6 1218625 1218626 GCTCGTCAATGACTCCAACATGCAT - T TTTTTTGTGACAGACACACTCTGAA insertion Somatic Capillary sequencing 19940820 PD4088a 8 64884467 64884467 TCACAGGTGGCCTTGATTATCAAGA T - TTTTTTTAATGGTGTCCCCTCCCTC deletion Somatic Capillary sequencing 19535103 PD4088a 8 5199270 5199271 TCTGTAAAGTTCAGGTACATTGGAT - T TTTTTGATAATGGTAAGATCATTGA insertion Somatic Capillary sequencing 19788724 PD4088a 5 30103282 30103283 TGTATTTTGGCAGAACATATATTTT - T CCAGCAGATTCTATGAATTACTCAT insertion Somatic Capillary sequencing 19587999 PD4088a X 23041821 23041822 GGCCTACTTCAGTCCTGGGCTCCAC - A AAAAAAAATTACTCATCACAAGTAA insertion Somatic Capillary sequencing 19446173 PD4088a 4 127543897 127543897 AACCAAAACAGCATGATACTGGTAC A - AAAATAGCTATATAGGCCAATAAAA deletion Somatic Capillary sequencing 19983048 PD4088a 1 175668542 175668543 TTTAAAGTAACATCATGGATTTTTT - T TTCCTCTAGCCATTTTCAGTTGCAT insertion homo_sapiens_core_58_37c TNR ENSG00000116147 CCDS1318.1 ENST00000367674 Somatic Capillary sequencing 19447805 PD4088a 4 138897882 138897884 TCAGTCCAGCTGGTGTAAAATTATA TTG - TTGTGATTTTCATTTTCTGATTATT deletion Somatic Roche 454 pyro-sequencing 20000086 PD4088a X 106933519 106933520 GATGTTCTGTCCCTTTGCAGACAAT AG - AACCTGTAAGCTACTTCAGAAGAGC deletion Somatic Roche 454 pyro-sequencing 19902392 PD4088a 16 71935053 71935054 CCTAATCATACAGGATAACAAAGTT TA - TGTTATGTTTAGCTTTGGAAACAGG deletion homo_sapiens_core_58_37c KIAA0174 ENSG00000182149 CCDS10905.1 ENST00000329908 Somatic Roche 454 pyro-sequencing 19869682 PD4088a 10 80791203 80791204 CACAAACTCAGAGAGAGAGAGAGAG - GA TTGCTGAGCCTCAGTTGCTTTACCT insertion Somatic Capillary sequencing 19614957 PD4088a 11 83134845 83134846 AATAGTCTTTTCCCAAAAAAAACCC - C TCTTGCCTGAGGACCAGTCTGTCTT insertion Somatic Capillary sequencing 19351477 PD4088a 11 28371879 28371880 TGTATTTGAAGGAAATGAGAAAAAA - A AAGAACAAAGAGGGTAGAATTCCTA insertion Somatic Capillary sequencing 19467031 PD4088a 4 127145172 127145173 GGGAGGAATGTAGTTTAGTGATTAA - TTA TTTCCAAGTCTTAATTAGCTAAGAT insertion Somatic Roche 454 pyro-sequencing 19378898 PD4088a 13 83081927 83081928 CACAATAGTAATAATAATAATAAGG - A AAAAATATATCTATAAGCATAGAAA insertion Somatic Capillary sequencing 19379196 PD4088a 13 85517898 85517899 AAATTAGTCTCATTTATCAAAAAAA - A ACATAAATATCTTGTTTTGACTGGA insertion Somatic Capillary sequencing 19446353 PD4088a 4 128723130 128723130 TATGTTAAGAACACAGACTAAAGAA C - CGTAATAGCTGGGTTCGAATCCTGG deletion homo_sapiens_core_58_37c HSPA4L ENSG00000164070 CCDS3734.1 ENST00000296464 Somatic Roche 454 pyro-sequencing 19692727 PD4088a 5 58267570 58267571 GCACTGGTTTTACACAAACTTGGAC - T TTTTTTCCCCATACAGTACCCAGAT insertion homo_sapiens_core_58_37c PDE4D ENSG00000113448 CCDS47213.1 ENST00000340635 c.? p.? Somatic Capillary sequencing 20017564 PD4088a 16 34452460 34452460 TAAGGTAAAAGAAATAGGAATAATT C - AACAACAGCAATAATTCTTCTGTCC deletion Somatic Capillary sequencing 19619141 PD4088a 11 115920403 115920404 TCTAGGTTATAAAAATTAAAAAAAA - A AGGAGAGAGGAGAGACAGCTGGTTT insertion Somatic Capillary sequencing 19645976 PD4088a 4 33865496 33865497 TAATAACAAAACCAGACAAAAGCAT - A AAAAAAAAGAAAAAGAAAACAAAAA insertion Somatic Capillary sequencing 19728274 PD4088a 7 119655985 119655986 ATCTCAAAGAATGTTTGAAAAAAAA - A ATGGCTAACACTTTTTAAAAGCCCC insertion Somatic Capillary sequencing 19809248 PD4088a 9 80136303 80136303 CAAATTGGATGAGGAAGTGGGACAG A - AAAATTTATTTAAACAGATGTTTTA deletion homo_sapiens_core_58_37c GNA14 ENSG00000156049 CCDS6657.1 ENST00000341700 Somatic Capillary sequencing 19591706 PD4088a 21 21620834 21620836 GCTCATATCAACAGTGAATGGGCAG ACT - ACAGATCAGCAGCCTTGAAAACATG deletion Somatic Roche 454 pyro-sequencing 19673276 PD4088a 3 193011106 193011107 GTTTCCTTAAAATGATGATGATATA - AT CTATCAGATTGCATTCAGAGGAATA insertion homo_sapiens_core_58_37c ATP13A5 ENSG00000187527 CCDS33914.1 ENST00000342358 Somatic Roche 454 pyro-sequencing 19796688 PD4088a 17 66187837 66187839 AAAGGTTTTGCAATGGCATTCAATG AAT - AAAAAATGTTTAGAGTTCAGTAACT deletion Somatic Roche 454 pyro-sequencing 19835340 PD4088a 14 80056447 80056448 CAACGAGGGCCAGTGGTGGAATGAT AC - AGTTTGGCTGTGTCCCCACTGAAAT deletion homo_sapiens_core_58_37c NRXN3 ENSG00000021645 CCDS45145.1 ENST00000428277 Somatic Roche 454 pyro-sequencing 19392992 PD4088a 2 72434983 72434985 TCCTAAATCATATAAATGTAATGAA AAT - AATAAAAACAAGTTGAAAATCCCTG deletion homo_sapiens_core_58_37c EXOC6B ENSG00000144036 CCDS46333.1 ENST00000272427 Somatic Roche 454 pyro-sequencing 19501557 PD4088a 18 59015238 59015238 AATAAAGATAATTCCTGAGCCTATA G - AACCTTACCTTTGCAAAGTTTGGCT deletion Somatic Roche 454 pyro-sequencing 19880107 PD4088a 3 32181880 32181880 ATCGGTAAGCACTGCCTGGGAGGGA C - CCCAGGAGTCTGGACATTTGATGTT deletion homo_sapiens_core_58_37c GPD1L ENSG00000152642 CCDS33729.1 ENST00000282541 Somatic Roche 454 pyro-sequencing 19900961 PD4088a 16 61237872 61237872 TAGCAGCTATATATCATACAAAGAC A - AAAACAAAATGCCTTACATATCTTC deletion Somatic Capillary sequencing 19827628 PD4088a 14 28419907 28419909 TAAGAAAACCAAAAAGCTAATACTT ATC - ATCTCAGAACAGAGTGCTATTCTTT deletion Somatic Roche 454 pyro-sequencing 19868138 PD4088a 10 66767386 66767387 TCATTGATTTATACTCTAATTTTTT - T TTTTTTGACAAACTTGGATTTAATT insertion Somatic Capillary sequencing 19464542 PD4088a 4 106534382 106534383 ACAGATGCATCATCCCAATTTCTTG - A AAAAAAAACTGCACTCTAGAATTCC insertion homo_sapiens_core_58_37c ENSG00000236699 ENSG00000236699 CCDS3670.1 ENST00000265154 Somatic Capillary sequencing 19428679 PD4088a 6 111719635 111719636 CCATGTGGGGGGAAAAAAAGAAAAA - A AAAAAAAAAATTGTCCCATTTACAT insertion homo_sapiens_core_58_37c REV3L ENSG00000009413 CCDS5091.2 ENST00000358835 Somatic Capillary sequencing 19985494 PD4088a 1 195482436 195482437 GTTTGTTGTTGTTCCAAGAAAAAAA - A AATATTTTTATTGTTGATTGATCTA insertion Somatic Capillary sequencing 19808418 PD4088a 9 73953592 73953592 TGAAATAAAACATGTAACTAGCTGC A - AAAAAAAGCCTTTGACAAGATTTAA deletion homo_sapiens_core_58_37c TRPM3 ENSG00000083067 ENST00000357533 Somatic Capillary sequencing 19935350 PD4088a 18 10438453 10438453 TGAAACCCTTCCTTCCTTCCTTCCT C - CCCCCCCTTCCCTCCTTCCTTCTTT deletion Somatic Capillary sequencing 24830473 PD4192a 6 1412939 1412940 GCAGCTGCTTCCCACCTCGCACTTC - CACTTCG GGCATTCTTACATCTGGCAACGCTA insertion Somatic Capillary sequencing 24745753 PD4192a 2 157424375 157424375 AGCTGTCTAATTCTAATGAAAACTT A - ATCAGCCTGGATATAGTTGGGCATT deletion homo_sapiens_core_58_37c GPD2 ENSG00000115159 CCDS2202.1 ENST00000310454 Somatic Roche 454 pyro-sequencing 24808836 PD4192a 10 14052065 14052066 AAGGATAGGCACACTTTCAGAACAC TT - TATCTGTTGAGAGTCACGGCATGTC deletion homo_sapiens_core_58_37c FRMD4A ENSG00000151474 CCDS7101.1 ENST00000357447 Somatic Roche 454 pyro-sequencing 25197243 PD4192a 11 34525532 34525533 ACACCAGGTCTTCATGACACAGAGC - T CTGCTTCACTGCCCAGGCCATTGCC insertion homo_sapiens_core_58_37c ELF5 ENSG00000135374 CCDS7892.1 ENST00000312319 Somatic Capillary sequencing 24953758 PD4192a 15 70909854 70909854 CAGAAGGAATCAGCACAGAATGCCC T - AGTTGCTTCACAGTAGAAGATGGAA deletion Somatic Roche 454 pyro-sequencing 25129950 PD4192a 8 95168826 95168847 GACAGTTGTTTAATCTGAAGGATTG CTTTGGGCACTTGCCAAAATTA - CTCATTTCCAGGCTTTCCCCTTGAG deletion homo_sapiens_core_58_37c CDH17 ENSG00000079112 CCDS6260.1 ENST00000450165 Somatic Roche 454 pyro-sequencing 24884917 PD4192a 7 127424855 127424855 GGTTTTATTTATTGAAATATAGAAT A - TTTTGGAAGAGAATAGTTTTTAGAG deletion homo_sapiens_core_58_37c SND1 ENSG00000197157 CCDS34747.1 ENST00000354725 Somatic Roche 454 pyro-sequencing 24777647 PD4192a 1 22202970 22202983 GGCGCTTGGTCCATCCGGCCCAGGG CTTGGCGGTCCTGC - CCGCCCACCTTGCAGAGGTACCTGG deletion homo_sapiens_core_58_37c HSPG2 ENSG00000142798 ENST00000374695 Somatic Roche 454 pyro-sequencing 24854073 PD4192a 22 49859220 49859223 AGCCAGCCTCCCCTTCACACCCCTC ACCG - AGGGACTCAGCGGGTGCAGGGCGGC deletion Somatic Roche 454 pyro-sequencing 25077389 PD4192a 10 102551853 102551853 TGGGTGCCTTACAGCCACTGAAGAT A - ATTATTGGAGTCTTTTAAGGAGAAA deletion homo_sapiens_core_58_37c PAX2 ENSG00000075891 CCDS7499.1 ENST00000361791 Somatic Roche 454 pyro-sequencing 25109014 PD4192a 17 64194233 64194234 GCCCACAGAAGCATACATTTCAGTG - CT AGAAATCCAAGATGATGGAACTCCA insertion Somatic Capillary sequencing 24915129 PD4192a 4 82805109 82805117 CATTGTGACAACTGCATTTCTAAGC CTATGGTTG - CAGGCAAGACAACATTTGTAATTGT deletion Somatic Roche 454 pyro-sequencing 24968883 PD4192a 11 55305501 55305501 ACTGGATACACAGGAGCCAAAGGCA T - TTTTTTAAAAAATTTCATTTGGAGA deletion Somatic Capillary sequencing 25322657 PD4192a 5 56735172 56735173 CTGCCTACCTCTGGACATTTTAAAA AT - ATGTGTGAGCTGAAGAAATTTTTAT deletion Somatic Roche 454 pyro-sequencing 25174689 PD4192a 20 13269284 13269302 AACGGACCCGGTCTTGTGGCTACGC GTGCACTGCAACAGAATCG - AGGACCTGTGACCGTCCAAACTGCC deletion homo_sapiens_core_58_37c ISM1 ENSG00000101230 CCDS46579.1 ENST00000262487 c.741_759del19 p.C248fs*22 Somatic Roche 454 pyro-sequencing 24718591 PD4192a 1 214603836 214603836 GATTAACACATTTAAATCAGTAGAC T - TTGAGTAAAGCAGAATGCTTGTCAC deletion homo_sapiens_core_58_37c PTPN14 ENSG00000152104 CCDS1514.1 ENST00000366956 Somatic Roche 454 pyro-sequencing 24869504 PD4192a X 78825265 78825266 TAGAGCTGCTATGGTTTGCTGGGTG - G CACTCCAGTCATTAGTCACCTTGGA insertion Somatic Capillary sequencing 24689259 PD4192a 3 139741388 139741389 AGGCTGAACCAGGCCAGGAGACTGG GC - GCTGCAGGAGGGACGGCTGCACAAT deletion homo_sapiens_core_58_37c CLSTN2 ENSG00000158258 CCDS3112.1 ENST00000458420 Somatic Roche 454 pyro-sequencing 25027921 PD4192a 12 19375681 19375697 AATGACAAGCTCAAATGCCTTTGAG AGCTGGGCAGATGCTGT - AAATATGTGCAGTTGGTGAAGTGTA deletion homo_sapiens_core_58_37c PLEKHA5 ENSG00000052126 CCDS44840.1 ENST00000424268 Somatic Roche 454 pyro-sequencing 25269345 PD4192a 12 113660953 113660954 ATCCCCAGATCTGGAGGAAACTTAA - A AAAAAAAACTCACAGGAAGTGTGCT insertion homo_sapiens_core_58_37c TPCN1 ENSG00000186815 CCDS31908.1 ENST00000335509 Somatic Capillary sequencing 24754423 PD4192a 2 223729379 223729380 AGTGGGAGGTGAGGAAAACGGAGAC AG - AAACTGTTTCCAATAGGTTTGATTT deletion homo_sapiens_core_58_37c ACSL3 ENSG00000123983 CCDS2455.1 ENST00000357430 Somatic Roche 454 pyro-sequencing 25004407 PD4192a 20 48902575 48902582 GTGAACTGGAGAGAACAGGCTCTCC TCAGGGGA - CGGTGGCCTCTGAGCCAGCAGGCGG deletion Somatic Roche 454 pyro-sequencing 25115492 PD4192a 16 72883760 72883800 CTCTGCCACTTGGAGTTCACCTACC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA - AAAAAATTCACACCTACCCTTCCAT deletion homo_sapiens_core_58_37c ZFHX3 ENSG00000140836 CCDS10908.1 ENST00000268489 Somatic Capillary sequencing 25130424 PD4192a 8 97919724 97919725 AAATAGCCATACCCAACCATAACTC TA - TTGTTACTGCTGTTGAAGAACGGGA deletion homo_sapiens_core_58_37c ENSG00000104324 ENSG00000104324 CCDS6273.1 ENST00000220763 Somatic Roche 454 pyro-sequencing 24910642 PD4192a 17 21199914 21199915 TGACTCCTGGCCAGACCCCTGACTT - G TGTGCAGCCTGGGGCAAGTGGCTTC insertion homo_sapiens_core_58_37c MAP2K3 ENSG00000034152 CCDS11218.1 ENST00000395491 Somatic Roche 454 pyro-sequencing 25176010 PD4192a 20 23615614 23615614 GTATGTGAATGTATGTGCACAGACA C - CCCCACACATATGTGCACACACATA deletion homo_sapiens_core_58_37c CST3 ENSG00000101439 CCDS13158.1 ENST00000398411 Somatic Capillary sequencing 25119547 PD4192a 16 54848578 54848579 ATAAAACCTGCACAACTTTAGTGGG - A AAAAAACCACATAAAATCTAAAATG insertion Somatic Capillary sequencing 24841734 PD4192a X 31500711 31500711 AAAGTAAGATCAGCATTGCAGAGTG T - TCACTAGATGTGCTGAGAGCAATTT deletion homo_sapiens_core_58_37c DMD ENSG00000198947 CCDS14233.1 ENST00000357033 Somatic Roche 454 pyro-sequencing 24821591 PD4192a 6 11768003 11768004 GGCTGTCTTTCTCTCCTCGGTTGTC TT - TTCCATGTGCCACCTTTGAAGGTCT deletion homo_sapiens_core_58_37c C6orf105 ENSG00000111863 CCDS4521.1 ENST00000414691 Somatic Roche 454 pyro-sequencing 24866031 PD4192a X 134164628 134164628 GGCAGTATGCTTGTTAAAAGTCATC A - CCATTCTCTAATCTCAAGTACCCAG deletion Somatic Capillary sequencing 25096524 PD4192a 17 42374463 42374464 ATTGAGTATTTCTGGGCCCTCATGA AG - AACACAGTAGGCTGGAGGGTTCTAT deletion Somatic Roche 454 pyro-sequencing 25129874 PD4192a 8 94541499 94541502 TCGTGTTCTAGACCTCTTGATCAAG CAAC - CACAAATCCAGTCCCCTAGAGTCTC deletion homo_sapiens_core_58_37c AC011118.2 ENSG00000246662 ENST00000501400 Somatic Capillary sequencing 25299791 PD4192a 3 10780971 10780984 GTTCCGGGTACCGAGTTTGACCCTG GAAGTACACAGGTA - GATCATGGCCAGGCTTTAGCCTCAA deletion Somatic Roche 454 pyro-sequencing 24716339 PD4192a 1 199774930 199774930 GGTAAAACTGAGGAACAGAGATGTT A - AAAAAAAATTGCTTATCAGTAAATG deletion Somatic Capillary sequencing 25096042 PD4192a 17 39240789 39240803 TGTGTGCTGCCAGCCCACCTGCTGC CGCCCCAGCTGCTGC - CGCCCCTGCTGCTGCCTGCGTCCAG deletion homo_sapiens_core_58_37c KRTAP4-7 ENSG00000240871 CCDS45673.1 ENST00000391417 c.331_345delCGCCCCAGCTGCTGC p.R111_C115delRPSCC Somatic Capillary sequencing 25356332 PD4192a 7 22217517 22217517 GGAAAGTAACAGAATCTCCAGGTTT G - GAAGCGGGAGTAGAGTCATAGACAC deletion homo_sapiens_core_58_37c RAPGEF5 ENSG00000136237 ENST00000344041 Somatic Roche 454 pyro-sequencing 24668547 PD4192a 2 63122250 63122250 CCAGAAAAGGCAGAATTATAGGAAC A - GATAACTAGTGGTTGCCCAGGGGTA deletion homo_sapiens_core_58_37c EHBP1 ENSG00000115504 CCDS1872.1 ENST00000263991 Somatic Roche 454 pyro-sequencing 24781250 PD4192a 1 46752858 46752858 TCCAGTGGCGTGATCTCGGCACACT G - CAAGCTCTGCCGCCCGGGTTCACAC deletion homo_sapiens_core_58_37c LRRC41 ENSG00000132128 CCDS533.1 ENST00000343304 Somatic Roche 454 pyro-sequencing 24759498 PD4192a 2 110263108 110263109 CAAATAAAATAATTTTTTTTAAAAA - A TGAACTCGTACAAGATTAACACAGC insertion Somatic Capillary sequencing 24976261 PD4192a 11 108337364 108337364 ACTATCAAACAACTGCTCAGGCAAT G - AAGTATTTTACTACACCCATGTGCC deletion homo_sapiens_core_58_37c C11orf65 ENSG00000166323 CCDS8340.1 ENST00000393084 Somatic Roche 454 pyro-sequencing 25032092 PD4192a 12 9174511 9174512 GCCTGAGGCTGTTTTACAGATAACT - T TTTTTTTTCTTAATAAGTAGAAGGA insertion Somatic Capillary sequencing 24863653 PD4192a X 104421981 104421981 TCCTTATTAGAATTTAATGCCTGAT G - ATCTGTCACTGTCTCCTATCACCCC deletion homo_sapiens_core_58_37c IL1RAPL2 ENSG00000189108 CCDS14517.1 ENST00000372582 Somatic Roche 454 pyro-sequencing 25112271 PD4192a 16 49174193 49174195 ACACCTCCAGATGCCCTGGTCAAAC GTT - GTCCTTCAGCCTTGAGCCATAATTA deletion Somatic Roche 454 pyro-sequencing 51488792 PD4005a 16 20526972 20527006 CTTCTAAGCATTTATCAAATTCCCC TTTAATAAATGACTGCTCAGCTACCAGGGTAACCA - TTTAAAATACATAGTTGATTAAGTG deletion Somatic Roche 454 pyro-sequencing 51726593 PD4005a 3 80180938 80180942 AAACCATGTAGGTATGAAAGGTTCA ACAAC - AATCACATCTGCAGTAAATTCAAAT deletion Somatic Roche 454 pyro-sequencing 51149179 PD4005a 6 141349892 141349917 TACTTTGAGTTATTCAGTATCAACA TTTCTAACAAATCAAAATTTTACGTG - TTGAATATCTCTTGGGTACCATTTA deletion Somatic Capillary sequencing 51118719 PD4005a 14 27035862 27035882 ATAATATGGCCAAGGCTACAGATGC AAAAATTGTAAAACTAAAAGT - AAAATAACATGTGCTAAGAAACAGA deletion Somatic Roche 454 pyro-sequencing 51471035 PD4005a 8 112065545 112065563 CATTTCCACCCAAAAAGTACAAGTG TTCCATTTCAACACTTATA - TTCCATTTTATTCTATTTAAAATGT deletion Somatic Roche 454 pyro-sequencing 51563981 PD4005a 4 170530439 170530472 GTACAAGCACTAAGGAAAATAATTT GGCAACATCTACCAAAATTATAAGGGGACAGAAA - CTTTGATGTAGTGATTCAATTTCTA deletion Somatic Roche 454 pyro-sequencing 51756640 PD4005a 3 154103112 154103112 TTTAGAGCGGGCTTTCATATTTTTT G - TACCGGTTGTGAACAATAAGAAGCT deletion Somatic Capillary sequencing 51707076 PD4005a X 138597048 138597089 ACGATGGAAGTAAGAGTTTGGAGTA ATGCAAGGAAGGGGCCATGAGTTGGAAATACTGGCAGTCGCT - AGAAACCAAAAAATGTGAGGAAATG deletion Somatic Capillary sequencing 51285463 PD4005a 9 112663806 112663820 GTCTCTTTGAAGATGGGATAATCTC AGGCCTAACCACAGA - AGCAGTTCTGGAGAAGAGTCAGAAT deletion Somatic Roche 454 pyro-sequencing 51285381 PD4005a 9 111800643 111800657 AATATGTTTACTATTCCTTAAATTT CTGATGAAAAAATAA - CTGAAACACCTTAAAATACCCTATT deletion Somatic Roche 454 pyro-sequencing 51384737 PD4005a 12 31656689 31656708 TCCAATTACTTCACATAGTCCTCGT TTCCGGTTTTATCAGAGAGG - TTTATCATGTTTGATTTCATGTCTC deletion Somatic Roche 454 pyro-sequencing 51557886 PD4005a 4 126627092 126627109 CTTTATATTATTCCTCTTAGTAAGT GACATGTATTAATTTTTG - GTCGTTATTTTGAAGATATGATAAG deletion Somatic Roche 454 pyro-sequencing 51119532 PD4005a 14 33105548 33105575 AACATAATTTGTTGTACCGGAAAAT TACTTTTTAAATTTCCTTAGGTGTATGA - TAGATTTTGAAAAACATTATTTTGA deletion Somatic Roche 454 pyro-sequencing 51242529 PD4005a 1 244828194 244828195 TTCCCTAGATTTTTCCTTGCAAAAA - A GATAGAAATAATCTACATGTTTGTT insertion Somatic Capillary sequencing 51284122 PD4005a 9 101957220 101957252 CTGTCTGCAAGCTGAGACTACAGCT TTCAGGAAGAGGGCCCTCACCCAAGTTCAACTA - TGCTGGCACCCTGACTTAGGACCTC deletion Somatic Roche 454 pyro-sequencing 51691362 PD4005a 4 29714291 29714311 AAGTCCTTTTTTTCTTCATCCTTGC CACCATCTGTTATTTTTTTGT - CTTTTTAATAACAGCTACTCTAACT deletion Somatic Roche 454 pyro-sequencing 51528217 PD4005a 1 73610536 73610543 ATGAATCTGAAAACCCAAATATAGC AATTATTT - AAGTAAGTAAAGTCAGTTTTCCATA deletion Somatic Roche 454 pyro-sequencing 51663346 PD4005a 5 91183609 91183609 AAACTCTCTGAAATTCATTATCCGC T - CTGTGTACTTCAAAGTGGCACTGTG deletion Somatic Roche 454 pyro-sequencing 51201140 PD4005a 7 133841113 133841128 TGTCTGCTAGTATATATTGTGAATA TGGTCTCCTAGCCTAT AA CATTTTCACTTATTTGTGTATTTAA complex Somatic Roche 454 pyro-sequencing 51449681 PD4005a 6 22311053 22311079 TTTGCTTCTTCAGTAAATTGGACTT TTGTTTTTCTCCCACAGTCCTTAAGGC - TGTGGTCATTTTTCAATTTTTTTCT deletion Somatic Roche 454 pyro-sequencing 51126825 PD4005a 14 89428310 89428325 ATTAAAATCCTGAAGATAAACCCAA AAAGGATTCCTATTCC - CGCTCTGTGGGGTGATACATTTAAA deletion Somatic Roche 454 pyro-sequencing 51719738 PD4005a 3 27903457 27903457 CTAGGACTGAGATCAAACTCAGAAA G - GAAGGCAAAATAAAGAGATGACAGA deletion Somatic Roche 454 pyro-sequencing 51245268 PD4005a 2 115008853 115008881 GGAAATAAGATGCTTATGTATGTTC CTGATCTCTATGCATCGCTTTAAAAAATT - CTGCATGTTCATTATTTTGAAGTGC deletion Somatic Roche 454 pyro-sequencing 51591861 PD4005a 2 46648309 46648309 TAAATAAATAAATAAATCCAAAAAA C - AAAAAACAATATTCCTCATAAACAT deletion Somatic Capillary sequencing 51589603 PD4005a 2 30235954 30235955 TTATCTACTAATATTTGTCAAAAGA AT - ATAAAGTGCATTTGTTGACTAATAA deletion Somatic Roche 454 pyro-sequencing 51652208 PD4005a 22 38573947 38573963 GCCTTCAGGAGAAAGCTGAAAGAAG GTGGCTGAGCGAGGCTT - GCTCAACAGGCTCTTAGATTCCAAA deletion Somatic Roche 454 pyro-sequencing 51632140 PD4005a 7 39345032 39345033 TATAACTCTTAAACAGTATTTTTTT - T AAAAGTCAGAATGGCCCTCCAGCTT insertion Somatic Capillary sequencing 51726379 PD4005a 3 78459381 78459394 GCTGTGGGAAGCTTGAGTGTACATG GCTGTTATGATTCT - GAAACCTAGAAGTGTGTCATTAGCT deletion Somatic Roche 454 pyro-sequencing 51704406 PD4005a X 108035975 108036000 CAGGATGAGCAAGTTTGTTACATAG GAAAACGTGTGCCATGGTGGTTTGCT - GCACAGATCAAACCCTCACCTAAGT deletion Somatic Roche 454 pyro-sequencing 51514518 PD4005a 18 40754287 40754288 ATAAAAATAAATTTTTTAAGAATTG - A AAAAAAAGAAATAAAACTGTCACTA insertion Somatic Capillary sequencing 51148064 PD4005a 6 130052954 130052963 AGCTATGGAACCAGTGTTCAAATCT AGGCACTTTG - AGGCACTTTGTTTCACAATTCATAT deletion Somatic Roche 454 pyro-sequencing 51552723 PD4005a 4 83343443 83343459 CCATCACATCGAGCTAATTTTCGTA GTTTTTGTAGAGACGGG - GTTTTGCCATGTTGCCCAGGCTGGA deletion Somatic Roche 454 pyro-sequencing 51380242 PD4005a 12 919924 919934 TGCAAATGGTTATGAGGTCATTGTA CTAAACATTAG - CATTGTGCTTCTCACTCCAGAAGAA deletion homo_sapiens_core_58_37c WNK1 ENSG00000060237 CCDS8506.1 ENST00000315939 Somatic Roche 454 pyro-sequencing 51559232 PD4005a 4 136431335 136431335 TAAAGCCAACATAACTATTTTAGCT A - AAAAAATTTGCTACTGTAAAACAAG deletion Somatic Capillary sequencing 51609633 PD4005a 9 10357564 10357573 CAAAGTGCTTAGAGCAGAACTTGGC ACATAGTAAA - TGCTGAAAACATACTGGTTTAATAT deletion Somatic Capillary sequencing 51243461 PD4005a 2 99103620 99103656 GTTAACATGTTAATCACCATGGTAC ATTGTAGTGTGTTAATTGTAACCAAAATTGATACATT - ATTCACCAAATTCCATGTTTTATTC deletion Somatic Roche 454 pyro-sequencing 51741011 PD4005a 16 64129007 64129020 ATGATTTCTCTCTCATAGAGTTGTT TTGAGCATCAGAGA - TAGTGCCCTGTAATACAAGTAGAAA deletion Somatic Roche 454 pyro-sequencing 51253364 PD4005a 2 178321577 178321578 GCTCTGGACCAAGCGGACCTAATAG AC - ATCTACAGAACTCTCCACCCCAAAT deletion Somatic Roche 454 pyro-sequencing 51550689 PD4005a 4 68562740 68562768 TTGTTTGTTTGTTTGTTTTCTTTTT TGAGATGGGAGTCTCACTCTGTTACCGAG - ACTGGAGTGCAGAGGCACGATCTTG deletion Somatic Capillary sequencing 51589495 PD4005a 2 29255738 29255760 AATTAGGAAGATTATGTAAAGCTGT AAAGCAAATTTATTTTGCATTTC - AGAGGCTGTTTCTTTATCTTGCTCT deletion Somatic Roche 454 pyro-sequencing 51414822 PD4005a 10 8631003 8631003 AGATCTGATTCCAAAGTGAAATATC G - TATAGCTCTTAGGATCTCCTCTGGG deletion Somatic Roche 454 pyro-sequencing 51609556 PD4005a 9 9746980 9746998 ACAGTAGTAGCCCTGTAGGTGTTAG GAAACGTTTAACATGTTAA - ACAGTTAAAAATTCACCTGAGCCTC deletion Somatic Roche 454 pyro-sequencing 51689622 PD4005a 4 16803920 16803920 ACTGCTGATTGTCTATTGCTTCTTT G - TTGTTCACCAGCTATTATTTCCTTT deletion Somatic Roche 454 pyro-sequencing 51242202 PD4005a 1 242399862 242399863 AAAATAATAAAAACAACAAAAAAAA - A TCACAAGCATCATAATTAGAAGCCA insertion homo_sapiens_core_58_37c PLD5 ENSG00000180287 CCDS1621.1 ENST00000366545 Somatic Capillary sequencing 51807043 PD4005a 19 52692152 52692153 ATTGGATTGGAGAGAGAGAGAGAGA - GAGAGATGGGATTGGAGAGACAGAGAGAT GATGGGATTGGAGAGACAGAGAGAT insertion Somatic Roche 454 pyro-sequencing 51452379 PD4005a 6 41265750 41265785 TTCACAATTTATGTTCAGAGATTGC AGTAAAGACAGGCATAAGAAATTATAAAAGTATTAA - TTTTGGGAACTGATAAATGTCCATT deletion Somatic Roche 454 pyro-sequencing 51663480 PD4005a 5 92952812 92952812 CTTTAAGCTCTGTGAAGTGTTGATT A - AAAACCCTTTCCCAGACTCAAACTG deletion Somatic Capillary sequencing 51677930 PD4005a 5 85156018 85156019 TTGCTGCAAAGGAAATGATTTTTTT - T TGGATGCATAGTATTCCATGGTGTA insertion Somatic Capillary sequencing 51786020 PD4005a 10 122420371 122420387 CTTGATCTGTATCTCTGCTGTGAGC ACAGGTCAGCCCAGTGG - AAAAAGGTTATGTGTAAAAGCACTC deletion Somatic Roche 454 pyro-sequencing 51168598 PD4005a 8 17694925 17694925 AATGCTTTGACTCCTTTAAAGAATA T - TAAAGGGACACGTGAAGAAATCAGA deletion Somatic Roche 454 pyro-sequencing 51752209 PD4005a 3 116660706 116660714 GAGAAAGTCAACAAAGAAATAATGG ACTTACACT - ACACTCTAGAACAAATAGACCTAAC deletion Somatic Roche 454 pyro-sequencing 51432104 PD4005a 17 74823334 74823358 GAGTGTGTGTTCCATGCCCGCCTGG CCCTTGTGTGGGTATTTGTGGGTGC - CTCTGTGTGCTGTGTATGAGGGTGC deletion Somatic Roche 454 pyro-sequencing 51306803 PD4005a 15 89212235 89212255 AGACAAGACCAAAATAAATAAAATC AGAGATGAAAAAGGAGCTATT - ACAACTGGTACCACAAAAATTCAAA deletion Somatic Roche 454 pyro-sequencing 51316772 PD4005a 15 88397496 88397497 GACTATAGGAGTTGGTGCAGACAAA - GTGCAGACAAAG TGACTCAGAGTGAGACAGAGGGGGG insertion Somatic Capillary sequencing 51529709 PD4005a 1 84199121 84199142 AGCATCCCAGGAAAATGTTAAGTAG AGATGGCTACAATATTCTCAAT - AGATGAGAAACTCACCATCTCACAA deletion Somatic Capillary sequencing 51486724 PD4005a 16 7361589 7361589 CATCCCCGGTTTTTCCCTTCCATAG A - TCAGCTTCCTCTTGCTCTGCCTGAA deletion Somatic Roche 454 pyro-sequencing 51528418 PD4005a 1 74876405 74876412 CTAAGATACACTAATGTAATAGCCA AGATGATG - AGATAACTGTGAAAAGCCAGTAGGG deletion Somatic Capillary sequencing 51636978 PD4005a 11 14300932 14300942 TTTCTTGTCTTTTTCTTTCCGTGTT GGTTCTGGTGA - AGGAGGACATTCCTGCTCTTGAAAT deletion Somatic Roche 454 pyro-sequencing 51192047 PD4005a 7 92081461 92081481 GTGCATTACCTTCACAGTTTACAGA TTAAGGCCAGAAGCAACTTGT - TGAGCTACGGGTTTAGTGTACTAAC deletion Somatic Roche 454 pyro-sequencing 51464061 PD4005a 8 51364676 51364715 CCACGGCTGCACAAGAACCGAGACG AAGGAGGGTTTTTAATTAGGAACACTTGGCATAACTAATC - AAGGTTTTTTAGTATTTGTCACTTG deletion Somatic Roche 454 pyro-sequencing 51532085 PD4005a 1 102966470 102966496 AACCAAACTGAGGCTTCTTTGAAAA CCATATTTCTTTCTGAATCACACTGAG - ACAGGTTAATGCCTCTGTTCCATGA deletion Somatic Roche 454 pyro-sequencing 51620546 PD4005a 7 10453636 10453637 TATTTATTCATTACTTGATGGACAC TT - AAGTTGTTTTCCTATCTTGGCTATT deletion Somatic Roche 454 pyro-sequencing 51707852 PD4005a X 146037076 146037097 TTTTTAAAATTTGCTTACTGGGAAT AGCTGTTGTTAAGTCGATCTTA - AGCATAGAATAATGTCAGTTAGAAT deletion Somatic Capillary sequencing 51184568 PD4005a X 33606063 33606064 TAAATGATAAATGTTGAGTCATGAA - T TTTTTTATAGCAGAATTTGAAAACA insertion Somatic Capillary sequencing 51506679 PD4005a 18 41653787 41653787 CTCTCCAAGTCATGAGACTTTAGAG A - AAAAAAATCCCCAGAGGGAAGAGCT deletion Somatic Capillary sequencing 51553760 PD4005a 4 91633181 91633184 TGTTTCTGACTGTGGATATTTGAAT CTTA - CTTCTTTTCTTTATTAGTCTAGCTA deletion Somatic Roche 454 pyro-sequencing 51217311 PD4005a 1 169289201 169289208 TCATTGATTTTTATAAACTTCTTAC TAAAGATA - TAAGCTATCAAAGTAAACATTTAAT deletion Somatic Roche 454 pyro-sequencing 51139698 PD4005a 6 63427734 63427734 CTCTCAATCAAATGGTAAAATAGCA T - TTTTTTTTAACTTAGGAGTGATCCT deletion Somatic Capillary sequencing 51776408 PD4005a 10 53225010 53225028 AGCTAAAACAATAGTCCTGATGTTC CTCCTTCTTTAAAAAAAAA - CTCCAAAACTGTCTGGTAGAATTCT deletion Somatic Roche 454 pyro-sequencing 51814123 PD4005a 5 41269155 41269170 AATGACTGTACCTGGTCATATAGTA TGCTTAATTAAATGGT - TATGTAGGCATGACGTCAGTTCTGG deletion Somatic Roche 454 pyro-sequencing 51705618 PD4005a X 120783956 120783971 ACACTTTTCAGAGAGTGAAATTCTT CTCTAAGCCTACTCTG - CCTCTGGAGTTTGTAGAAGGAAGTG deletion Somatic Roche 454 pyro-sequencing 51322749 PD4005a 18 6506185 6506200 TTCATTCAGTATTTACCAAGCACCT ACAATATGCCACCGTG - AGAGGTGCTAGGTGTGTAGTGGAGA deletion Somatic Roche 454 pyro-sequencing 51759864 PD4005a 3 178183282 178183300 TGCATGATGTAATGCCCGTGAGGGG CTTAGTGTAGCACCTAACA - CTTAGTAAGCATTGATATATGTTCT deletion Somatic Roche 454 pyro-sequencing 51256507 PD4005a 2 201446251 201446261 TCTTTAAGATATAAAGACTTTAAAA ACATATTTATG - AGACCTTCCTGATAACTCCTACCAC deletion Somatic Roche 454 pyro-sequencing 51553961 PD4005a 4 93500228 93500236 TATATCATAGTAGAAGATCCCGAGA AATCTCCTT - ATGTTTCCCTTATGTACTTCAACTA deletion homo_sapiens_core_58_37c GRID2 ENSG00000152208 CCDS3637.1 ENST00000282020 Somatic Roche 454 pyro-sequencing 51646395 PD4005a 11 28735175 28735176 GTCTTTTGAAGAACACACAAAAAAA - A GAGTTTTAAAAGTAATTAACATATC insertion Somatic Capillary sequencing 51661133 PD4005a 5 72008404 72008412 AATACAAGAAGGAAAAAACAGGATG ATAGCATTC - ATGGCCAGAGGTGCTGAGAACAGTA deletion Somatic Roche 454 pyro-sequencing 51143095 PD4005a 6 89531593 89531593 AAATGTTTATAACTGATGATATATT A - GGCCACTAAAAAAAAAAAACCAGCA deletion Somatic Roche 454 pyro-sequencing 51510776 PD4005a 18 71008588 71008620 TTTGAGACTGTAAAATGTATGGCAC AATTTGAAGTATTTGGCCACTGTCAGTGACACG - AATAGGTTATATAAACTGCATTTAC deletion Somatic Roche 454 pyro-sequencing 51620848 PD4005a 7 12513478 12513494 AGTGAAGCAAGTTAGGCCTGTGGAG GCTCAGTTTGAACTCCA - GCACTGCCTTACTAAATCATCTCCT deletion Somatic Roche 454 pyro-sequencing 51679870 PD4005a 5 105670725 105670726 CTTCTTAATAATAGCCATCCTAACT - T TGTGAAGTGATATCTCATTGTGGTT insertion Somatic Capillary sequencing 51143597 PD4005a 6 93531076 93531090 AGATGTAAATTGAGCAGCCTAAAAG AGGAGCATTAAAGGT - ATTAAAAATCTTTACCAATTAGTAA deletion Somatic Roche 454 pyro-sequencing 51169012 PD4005a 8 20328868 20328871 CTTTTCAACTCCTATCCTCTGTTGA CTCT - CTCTCCTTTCTCTCTGCTTATCCTA deletion Somatic Roche 454 pyro-sequencing 51417348 PD4005a 10 25608937 25608950 CTTTTTCCTCTATTATATCTCTCCT CGACATCCAACCCC - CTCAAGTCACACTGCTTTATGATCC deletion Somatic Capillary sequencing 51621284 PD4005a 7 15806673 15806710 TTAAGAAAATATTTTATTTTATTTT TAATGTAAAATTATATGTTAATATATAAATCTATCAGA - AAATTTGATATTAAAAAGCTGCCAG deletion Somatic Roche 454 pyro-sequencing 51782374 PD4005a 10 96062592 96062616 GGTGTCTGGTCCTTAGTAAGAGTGC AGAGTGCGAGCTGCCATTGCTGTTG - TTAGTACTGTATGTCCATTTCACCT deletion Somatic Capillary sequencing 51784629 PD4005a 10 113015439 113015445 GTCTGTATTTTTTGGAAGGAGAGCA TCCAAGG - CTTTCACTGTATTCTCAAAGAGGGT deletion Somatic Roche 454 pyro-sequencing 51172800 PD4005a 8 3713524 3713525 CTGTCAGTATTAATCAATTTTTTTT - T TTTTTTATATCTAGACAAACATTAC insertion Somatic Capillary sequencing 51740958 PD4005a 16 63588803 63588803 AAATATACCTTAACACTTTCAGGCA T - TTTTTTTGAGCCAAATAGAAATAGA deletion Somatic Capillary sequencing 51170701 PD4005a 8 31991183 31991217 AATGCTTCATACGAAAACTAGATTT ATGAAAAGGCCCATGGATTTTACATCTATTATATC - ATCTCCTGTTGGTTTGAGAATGAAA deletion Somatic Capillary sequencing 51249585 PD4005a 2 148248440 148248455 AGTGACAGATCTGAGAACAAAGTGG TTTTGAATCGTTATTT - TTTTGATCTTTAACCTTTCCTGTTT deletion Somatic Roche 454 pyro-sequencing 51431496 PD4005a 17 70993927 70993938 ACGCTAGCCATCCATTAGTCACTTA GTAACCGTCTTG - GTTATCAGATCAACTGTCACGACTT deletion Somatic Roche 454 pyro-sequencing 51116421 PD4005a 21 39743733 39743734 TCTTGCATTCATAAGAATAATTGGC - T TTTTTTGTACTGTTATTGTTTTTGG insertion Somatic Capillary sequencing 51335831 PD4005a 13 28345607 28345616 CTTTGCTGCCCTCTCTGTAACTGAT GAGCCCTGGG - GAGATGAGGAGGACCCAAGACCCTG deletion Somatic Roche 454 pyro-sequencing 51785836 PD4005a 10 121475714 121475733 AAGGGGAAATATGTTTATGCTGAAG TGATGGGCTAGACTTGTTAA - TGTTTGAGTGTTTCTAGCCTTTCCT deletion Somatic Roche 454 pyro-sequencing 51258601 PD4005a 2 217394145 217394165 AGATCATCCCATGGCAAGATCCAGT TAGATTACACTTCCTGGCATC - ACCTCATTGCAAGATCCAAGATCAT deletion Somatic Roche 454 pyro-sequencing 51551274 PD4005a 4 72237484 72237487 ATTTTTTCATTTCAACTATCTACAT AAAA - AAAAGCCTTCTCTAGGGTCTGTATC deletion Somatic Capillary sequencing 51759497 PD4005a 3 175434707 175434710 TGGATACATTTAAAGCTAAACAAAC AAAT - AAGTAGCATGACTGGAAAAAGAAAG deletion Somatic Roche 454 pyro-sequencing 51756955 PD4005a 3 156766265 156766265 CGACTAAGCTATGTTGCCTTTAAAG A - AAGACATCTTTAACAACAAAAAAAA deletion Somatic Capillary sequencing 51595488 PD4005a 2 76415292 76415294 ATGACCCGGTAGTTCAGCTTCTTCT CAG - CACTGTGGATTTCTCATTTTATTTC deletion Somatic Capillary sequencing 51428458 PD4005a 17 47908564 47908591 GAGGCACGAGAATCGCCTGAACCTG GGAGGCAGAAGTTGCAATGAGCTGAGAT - GATGCCACTGCACTCCAGCCTGGGT deletion Somatic Roche 454 pyro-sequencing 51395379 PD4005a 12 79557395 79557395 TTGTCAGGGTCAATTTTCCAAAAAG C - CTGTCTACACTGAAAACTCTGCTCT deletion Somatic Roche 454 pyro-sequencing 51430904 PD4005a 17 66870130 66870152 GTTGTTATTTCTATAAATGAGAGTC AGTTTTGTGTAGGAAAAAAGGGT - AAGGTGAATTGATAATAATCAAAAG deletion Somatic Roche 454 pyro-sequencing 51346921 PD4005a 13 109257629 109257642 TGCTTTTAAGGAGCCCATCTTAGTA ATCTATCTTTGTTT - ATCTTACAGGAATACTCATCATCTG deletion Somatic Roche 454 pyro-sequencing 51217184 PD4005a 1 168078370 168078391 TATAAAAGGTGAATGAAAACAAGAC TAGGAAGCACTTCACAAGGTAT - AATGACTTTATCCAAGCAAAGGATA deletion Somatic Roche 454 pyro-sequencing 51299607 PD4005a 15 31950528 31950539 CCTTCCCAGGTCTCCACTGAGCAAG AAAACTGCTTCC - ACCAGCTTGCTGAAGGCAGGAATAA deletion Somatic Capillary sequencing 51414075 PD4005a 10 5091825 5091855 TTATAGACTAAACTATTTCTACACT GGAAGAAAACTTGTATTCCAAGACTGTCCTG - AGACTACTATGTTTGTGATTAGGGA deletion Somatic Roche 454 pyro-sequencing 51255436 PD4005a 2 193483194 193483200 TTGTTATCAAATAGTTAACATTAAA ATGTAAG - AAGGCCTTTGAAATAAATGTGATTT deletion Somatic Capillary sequencing 51779246 PD4005a 10 71041522 71041558 GTCACCCTTAGGATTGTGCACAATA AAAGAGAGTGAAACAACAGATTTTGTCCCCAAAGAAT - AAAGGAAGGGGAGGGAGGAGGAAGG deletion Somatic Roche 454 pyro-sequencing 51753935 PD4005a 3 131793021 131793021 CCCTTTTTACTTGAAATATCAAATA T - TTTTTTGTAGTGCTTTATAGTTTAC deletion Somatic Capillary sequencing 51194593 PD4005a 7 114325865 114325871 ACTCCTCTAATAACAGTTACAATGT TCTGGAA - TCTCATTTACAACTATTCACTTTTA deletion Somatic Capillary sequencing 51363980 PD4005a 11 85905249 85905267 ATATGAGAAAACCACAGTTCAAGCA GTTGTCACATAGTAACTCT - GTTAACACATGGAGAGCCAGGATTC deletion Somatic Roche 454 pyro-sequencing 51718941 PD4005a 3 22353076 22353087 CTGGTGGAAAAAGTCAAGGAAAAAA TATTTCTAAACG - TAAAGATGTAAACTCGAAAGAATTT deletion Somatic Roche 454 pyro-sequencing 51486965 PD4005a 16 8844242 8844253 CCTAAAAGCCCAAGAATCTAGGGAG TGGCAGTGAGCC - TGAGTTGGTCTTTTCTTTCTCCAAG deletion homo_sapiens_core_58_37c ABAT ENSG00000183044 CCDS10534.1 ENST00000396600 Somatic Roche 454 pyro-sequencing 51561487 PD4005a 4 154535056 154535059 ATTCAAATAAAGTAGAAATGATACA AAAT - AAGTATGTTGCAAGCAGTCCAAACT deletion Somatic Roche 454 pyro-sequencing 51453546 PD4005a 6 50527476 50527512 TATAGAAAATGGATTAGTGGTTGCT TAGGACCATTGCAATGGTTGCAATGGTCCCAGTATTG - TTGGGAATGGGAAATGACAGCAAAT deletion Somatic Roche 454 pyro-sequencing 51195554 PD4005a 7 123866195 123866195 CCTCTTACACAGAGAAGGATAATGG A - AAAAATATTTTACTTCAATTGCTTA deletion Somatic Capillary sequencing 51217708 PD4005a 1 171720651 171720692 AAAAAGGACCATAATGATGAAGTAC AGGCAGCACACTCCATCTCAGAACAGTCACCAGCCACCAAGG - AATTCCCTGATCATCTGAATGGGAC deletion Somatic Roche 454 pyro-sequencing 68278969 PD3905a 5 25797230 25797239 CAGGTTACATATGTTGAACTGTACA ATCTATGCAG TATGTT GACTGGCAAGTCGATTATGTCGGCC complex Somatic Capillary sequencing 68413552 PD3905a 6 38255819 38255841 CCACCCAGGGAGAAGCCTCTTGTCT AGTTCCTCCATGAGTCTAACTTC - AGTGTACTGCCCCAGTGGAAAATCC deletion Somatic Capillary sequencing 68622518 PD3905a 1 23854094 23854123 GAAGAGGAATTGACTTGCCCAAGGT CACGCAGAGTGGAGCCTGGTCTCTCCTAAG - CCCTAAGTCAGATGGTGGGGGTAGG deletion Somatic Capillary sequencing 68895199 PD3905a 2 25369264 25369293 CCCCAGGGCCCTCAAAGCTTATCCA GAACCTTCCCACGGAAGGAAGCTCTGACTT - GGGCTAATTGGACAAGTAAAATGAG deletion Somatic Capillary sequencing 68289955 PD3905a 11 29331206 29331206 TACACTCTGATTTAAAGGGTGAAGA C - TTTTTGAAGCCATTTATGTAATGAG deletion Somatic Capillary sequencing 68585394 PD3905a 4 92178395 92178427 ATTTCTCATTGGCTTTTATTTTATT CTAATAAGTTATATCACGTCCCAAAGTAGTCCA - CTAACAAAGTAAAGTTCACAAGATA deletion Somatic Capillary sequencing 69014979 PD3905a X 147508664 147508677 TGCTGCCTTAGCTGATTAAACGGTG AATTAGAGTCAGCC - AATAACATATGGAGAACAGATCCAC deletion Somatic Capillary sequencing 68874813 PD3905a 13 94884791 94884791 CCCCTTCAGGAGGTGGGTTTTTTTT G - GGGGGGTGGGGCAGGGTGTCAAAGA deletion Somatic Capillary sequencing 68849714 PD3905a 16 53012945 53012945 CTGTTCATTGCCTTTGCTCACTTTT T - AATGGGGTGGTTTGTTGTTGCTTTT deletion Somatic Capillary sequencing 68258874 PD3905a 11 117671009 117671009 GAAGAGAGTCAGGCGGCGTGTTCTA C - CCCACGCCCACCTTAAACCCTGACA deletion Somatic Capillary sequencing 68432252 PD3905a X 49760530 49760553 AGCTTGCCCAGGATGAAAAGTAGCA AAATAAATGCCTTGTTATCCACGT - GGCATATGGCATTCTGTTGTTTAGT deletion Somatic Capillary sequencing 68660023 PD3905a 3 145684888 145684894 TGGTTTGATATCACGATAGCACAAA AATAAAA - ATACATATCAGTGAGATGGCAAAGA deletion Somatic Capillary sequencing 69013862 PD3905a X 139508082 139508082 TAATACAGGTCACAAAACTGACACC G - AGGTGAGGGAGAACCTATAAATAGC deletion Somatic Capillary sequencing 68329993 PD3905a 12 126488940 126488940 GGGTTTTCATGGCTTTTTCACAGGG A - AAAACTCCACAGGGGTGGAGGTTCC deletion Somatic Capillary sequencing 68822268 PD3905a 3 68379316 68379339 GTATCATGGGCAAATGGTCAAAAGA AGCTACAGGTTACGTCGTCATAGT - TCTAGATGCAAAGAAGTCTTTCTCT deletion Somatic Capillary sequencing 68550221 PD3905a 1 150407520 150407521 TTTTTCCAACATATGCTCATTCATG TC - TCTGTGTCACATTTTGGTAATATTT deletion Somatic Capillary sequencing 68931542 PD3905a 8 23138385 23138398 TACATACGCACTTGAAAAGAATGTG TATTCTGCTGTTGT - TGGCTGGAATGTTCTATACATGTTG deletion Somatic Capillary sequencing 68966546 PD3905a 22 36751136 36751136 GTTCAGAAGGAAGCAAGCAGCTCTC G - CCCCTGGAGATGAGATTGGATCAGG deletion Somatic Capillary sequencing 68471019 PD3905a 5 142854300 142854303 GATGATTTTCTCCTGATTATACTGG AGTT - ATGCATTTTTGGGAGGAAGACCACA deletion Somatic Capillary sequencing 68245505 PD3905a 8 116583221 116583222 GCTTGGGCTGGTCCACTGGATCAAT - A TCTGGACTGGGCCTGTAAGCCCAAG insertion homo_sapiens_core_58_37c TRPS1 ENSG00000104447 CCDS6318.2 ENST00000395715 Somatic Capillary sequencing 68236779 PD3905a 8 139198893 139198913 CCCTCTTCATCCAGCCACATCCGTG CAGCAGTTGGCTAATTTAGTT - GCTTTGTATAAAGTAAAGCCTGTGG deletion Somatic Capillary sequencing 68286729 PD3905a 11 10753994 10754020 GAGAACCAGCTCTTCTGTGCCAGGC TTCCTGGCACCGAAAAACCAAATATAT - TTCAATCCCTCTGTCCTCATGTCTC deletion Somatic Capillary sequencing 68822054 PD3905a 3 66960082 66960082 ACACACTGTATGTTTGTATCAAAAT A - TCACATATACCCCATAAATATGGAC deletion Somatic Capillary sequencing 68875286 PD3905a 13 97377355 97377355 AGAAGTTTAGCAGTATCTGATAGTG C - TTTTAATTTGAATTTTCCTAATGAC deletion Somatic Capillary sequencing 68276347 PD3905a 5 29967772 29967806 CAAACTAATGGAAAAACATTCCATG CCTCTGGAGAGGAAGAATTAATATTATTAAAATGA - CCATAGTGGTCAAAGCAATTTAGAG deletion Somatic Capillary sequencing 69012718 PD3905a X 129271462 129271483 ATAAGTGCTTTGCAACCTCTGAATA GGAAGCATCCTCCTGAAAAGAT - GCCCTGATTTCATATATCTGAAAAA deletion Somatic Capillary sequencing 68803417 PD3905a 19 39498370 39498388 CGATCTCAGCTCACTGCAACCTCCG CCTCCCAGGCTCAAGCGAT - CCTCCCACCTCAGCCTCCCAAGTAG deletion Somatic Capillary sequencing 68331025 PD3905a 12 131456744 131456766 CTGCTCTCTCGTATCTAGGCTTCAG GCAATGCACGTCTGGATCACATT - GCAAATTTTCTGGGAAATTGTTCTC deletion Somatic Capillary sequencing 68652492 PD3905a 3 98353188 98353221 AGAATTTTGAGGACCTAGACAAATT AATGCTAAAGAATTAATAAACCTCAATCATGAGG - AAAAAACGTGGAGACACACAGAAAA deletion Somatic Capillary sequencing 68816510 PD3905a 3 30272614 30272614 TCAGAGATTCAGATTTTTTCTTTTA C - TTTTTTTAGGTAGATAAGGAGATGG deletion Somatic Capillary sequencing 68842613 PD3905a 9 37200975 37201011 TAGGAATTTTAATTTTGAGTGTGAG GGAAGGACAGTGGAGGGAGAGCACTAATGGGTAGAAA - CTCTCCTGTGTAACAGGGGCTATGG deletion Somatic Capillary sequencing 68399940 PD3905a 14 53468719 53468720 ATGACAAAGTTGGGCATAGGGCAAA - CA CCCTGCAAGGGATGCTGTAGTAACC insertion Somatic Capillary sequencing 68977070 PD3905a 18 41183795 41183795 AGCCTACTTGATTGTGTTGGATAAG T - TTTTTGACGTGCTGCTGGATTCAGT deletion Somatic Capillary sequencing 68231744 PD3905a 8 108591124 108591150 ATCTCAGGGAGTGGACACCTTCCCT GTGATATTGTTTATAATATCCAGTTTG - GGAGAGGAAGATATTGGTTCCAATA deletion Somatic Capillary sequencing 68950461 PD3905a 18 1045652 1045671 AATAAAAAACATTGGAATGTAATGC TTGAATTTAGGATTCCCTGT - TCTAACATTTCATAGTTTGGCTTTC deletion Somatic Capillary sequencing 68704379 PD3905a 10 6150729 6150730 GTGTAAGTAGATCTGTTTCTTCCTC TT - TTATTCTGATACAGGTCTTTAACCC deletion homo_sapiens_core_58_37c RBM17 ENSG00000134453 CCDS7077.1 ENST00000446108 Somatic Capillary sequencing 68719562 PD3905a 15 41523224 41523261 GTAAAACTGTTGGTCAATGACGTTG CCCTTTTAATTGCGTCGTTAGCGACCGAGTGGCATCGC - CCCTTTAAGGCCGGTGGCAGCTGCG deletion Somatic Capillary sequencing 68330342 PD3905a 12 128251735 128251735 CAGGAAACACAGAGAGGGATTAAGC A - AAAAGTTGGTCATATAATTAGTTAA deletion Somatic Capillary sequencing 68257835 PD3905a 11 110936496 110936527 ACAGGCAGGAAATTCTGTGGAGGAG CAGCTTGTCAGCAGTTTGAAAACCCATGGAGA - CACCAGAAATGGAAGATTGCAGTGT deletion Somatic Capillary sequencing 68509355 PD3905a 6 72992089 72992090 AGCCATGAAATCAATCATGGAATCT - T GCCCCCCTACCACCCATGATCCCCT insertion homo_sapiens_core_58_37c RIMS1 ENSG00000079841 CCDS47449.1 ENST00000264839 Somatic Capillary sequencing 69006900 PD3905a X 78809142 78809142 TCTCTGACAATGAACAGTGATATGG T - TTGGCTGTGTCTTCACCCAAATTGC deletion Somatic Capillary sequencing 68638392 PD3905a 1 74002574 74002605 TCTTTGAGCTCTGAGATTCTTTCCT CAGAGAAAGAATCTGGTTGACTGTGCTGTTAA TGTGATTCTT TACTTGTGATTGTATTCCGAAATTC complex Somatic Capillary sequencing 68904600 PD3905a 2 85856244 85856244 TCTTTTTGCCTAGGCTGGAGTGCAA T - GGCGCGATCTTGGCTCGCTGCAACC deletion Somatic Capillary sequencing 68555028 PD3905a 1 181602869 181602872 TTTTGAAATCCTGACCTCAAGTAAT CTGC - CTGCCTTGGCCTCCCAAAGTGTTGG deletion Somatic Capillary sequencing 68872948 PD3905a 13 84597191 84597191 ACAATGCTGACTAATTCTTAATGGT A - AAATAAGTGATCAGATAGACAACTA deletion Somatic Capillary sequencing 68697445 PD3905a 12 30607774 30607792 GAGAAGAAAGAGCACTTTTTCAAAG TTAGTTATACGGGATAGAA - TGCTCAGGCAGATTTCATTGCATGC deletion Somatic Capillary sequencing 68272986 PD3905a 5 10559916 10559916 ATTAATGTTTTTTCTGCAATTAATG T - TTTTTCCCCATTTAGCTTGCTCTTT deletion Somatic Capillary sequencing 68662477 PD3905a 3 161630243 161630243 GAGACATATTCCAAGCCTGCTTGGT G - CCTTACATGGCCTTTAACAGCTTCT deletion Somatic Capillary sequencing 68523692 PD3905a 7 78673421 78673421 GGTAAGCCTCATTCTAACATAAAAA C - CTGTAGAGATACAACAACAACAAAA deletion Somatic Capillary sequencing 68684969 PD3905a 19 7825540 7825560 TGGAGGACAGTGCCAGGCCATGCAG GCCTGTCCTCAGGCCCCCCCA - GTGGCATTCATGCATGCAGGCTGTG deletion Somatic Capillary sequencing 68694310 PD3905a 12 12867710 12867740 CTCCCTGTTCCTTCAGGGACTCCAT AGTATTTTTTTTCACGCGTCGTCGCTACTAC - AGCAGACGCCTGCGTTCTCATTATT deletion Somatic Capillary sequencing 68232138 PD3905a 8 111500045 111500045 GCTGAACTCTATCAAACATTTAAAG A - AAAACGAATACTAATTTTACTCAAA deletion Somatic Capillary sequencing 68242636 PD3905a 8 88138731 88138732 TCCATTTGTTTTTTAAACTGTTTTT - T AATTACTGAGTTCTGATAAATTTTT insertion Somatic Capillary sequencing 68820225 PD3905a 3 55961230 55961231 CCTCCTGTTTCTTCCAAAAGGAAAC AT - AAACCCTATTTAGGTTTGTCTTAGA deletion Somatic Capillary sequencing 68253450 PD3905a 11 83448754 83448767 GCTCACGCCTGTAATCCCAGCACTT TGGGAGGCCAAGGC - AGGTGGATAACGAGGTCAGGAGATC deletion Somatic Capillary sequencing 68357426 PD3905a 2 195452118 195452118 TTTCTTACACGATGACCAAATTGAA C - ATAACAAAGTATTCTACTGAATAAT deletion Somatic Capillary sequencing 68659237 PD3905a 3 140701505 140701507 AAAATGATTGGAAAACTCCCAGCGT TGA - TGATAAACATGAATCCATAGCTCCA deletion Somatic Capillary sequencing 68668591 PD3905a 3 184789795 184789834 CTATCGAGTAAACTTATGAACAGAG CGTTCACAAACCATACGTGTACCACTAGCTTAACTCGCAA T TGTGAACACACCGGTGTCACCAGCA complex Somatic Capillary sequencing 68430481 PD3905a X 34577956 34577958 CTGTTTTGGGAAAATGGCAGTCAGA TCT - TCTTCTGACTATCTAAGGGTCTAAG deletion Somatic Capillary sequencing 68765986 PD3905a 7 37055413 37055414 GGAATGTGAGTTTTTCTGTGATTTT - T CACACTAATTCCTAGTCCAGCCTGT insertion homo_sapiens_core_58_37c ELMO1 ENSG00000155849 CCDS5449.1 ENST00000310758 Somatic Capillary sequencing 68726231 PD3905a 15 82079974 82079996 GGAGGAGAGAGCCTATAAGGTTTGA GAAACAAAATTGAAAAGTACTCT - GAACATCTCAGAGCTCTATGAAAAC deletion Somatic Capillary sequencing 68271790 PD3905a 5 3461666 3461666 TTGGCTGTGTGGCTGGCTGATCTTA G - GGAATGAGAAAGCAAATGTGATGGA deletion Somatic Capillary sequencing 68874447 PD3905a 13 92792902 92792906 CATGTTGGGAACCAGTGGTTTTGAC AGTAA - AGAATCACAGAGAGCAGTAAGGCTG deletion Somatic Capillary sequencing 68260400 PD3905a 11 126777521 126777521 TCAAAAAGCGTTCTGAGTACCAACT A - TGGCAAGGTTTGGAGCTAAAGTCTA deletion Somatic Capillary sequencing 67149189 PD4006a 19 49357842 49357842 GCTGTTGGTTTTGGTAGCGATGGGG T - TTTGCCATGTTGCCCAGGCTGATCT deletion homo_sapiens_core_58_37c PLEKHA4 ENSG00000105559 CCDS12737.1 ENST00000263265 Somatic Capillary sequencing 66755332 PD4006a 11 72147227 72147252 TTATTTATTGAAGCAGAGTCTTGCT CTGTCGCCCAGGCTGCAGTGCAGTGG - CACGATCTCAGCTCACTGCAAGCTC deletion Somatic Capillary sequencing 67013302 PD4006a 6 32367440 32367440 ACCATGTATGTCTCTAAGATTGTTT C - TTAGCTGTAATATGAGGATAAAGCA deletion homo_sapiens_core_58_37c BTNL2 ENSG00000204290 ENST00000468270 Somatic Capillary sequencing 66925055 PD4006a 8 77235653 77235656 TAGGTTTTTCCCTGAAGTAGTTTCT TAAG - TAACAGTATCAACTAATACTTATTT deletion Somatic Capillary sequencing 66904975 PD4006a 1 104341525 104341525 AACCCACAATTTATGTTTAAACTTC T - TTGATGACTTAATGCTTTTACAATA deletion Somatic Capillary sequencing 67374144 PD4006a 10 32196152 32196165 AATTTTTAAATTCACTTAAAGTTAG ACTTTTCAAAATAT - ATTCAAGTTTCAATTTCACGTATGT deletion homo_sapiens_core_58_37c ARHGAP12 ENSG00000165322 CCDS7170.1 ENST00000344936 Somatic Capillary sequencing 67134236 PD4006a 18 52347932 52347932 GACAATTATCTTGTGTGGTTAAAAT C - TTTTTCTTCATTTAGTCAAGGGAAT deletion Somatic Capillary sequencing 67055147 PD4006a 2 164073834 164073835 CACCAAAGGAAGAGTTGCATGGGGC AG - AGTCAAAGAAGGTTCCAAACTTAAA deletion Somatic Capillary sequencing 67345941 PD4006a 15 76700316 76700317 ATTTCTATCTCTAAAAAAAATCACT - A AAAAAAACAAAACCACAACATCATT insertion homo_sapiens_core_58_37c SCAPER ENSG00000140386 ENST00000303521 Somatic Capillary sequencing 67047843 PD4006a 2 103161677 103161677 CACCAACACTCTAAATCTCACATTT A - TTATTCTATGTTTATGGTTTTATAT deletion Somatic Capillary sequencing 67175012 PD4006a 3 6483763 6483763 ATATTCTTCCCCAGGGGTCAGCAGA C - CTTTTTCTGTCACGGGCCAGATAGA deletion Somatic Capillary sequencing 67055792 PD4006a 2 169125219 169125219 ATTTTGAAGGAAAATTTGAGGAAAA G - CAAAGGTATTATGAAGACTGTGTGG deletion Somatic Capillary sequencing 67383105 PD4006a 20 10819627 10819627 TCTCTATTTTCCTCTCTGCAATTTA C - TTTCCTATATGGATTTGTGATCCAG deletion Somatic Capillary sequencing 66792263 PD4006a 12 86416747 86416747 AAAGACCCGAGGGTAAGAGTACAGC A - AAAAAACAAAGTGACATACAGAGTG deletion homo_sapiens_core_58_37c MGAT4C ENSG00000182050 CCDS9030.1 ENST00000332156 Somatic Capillary sequencing 67197216 PD4006a 10 58005582 58005582 AGATTGGAACATAAAAACTTATTTC A - GTCTCTAGCTGGGGAAATATATCTT deletion Somatic Capillary sequencing 67200339 PD4006a 10 77917944 77917944 TAACCATTCTTTCATGTGAATCTTA T - GTCCTAGGGACTTTGATCTACACAT deletion homo_sapiens_core_58_37c C10orf11 ENSG00000148655 CCDS7351.1 ENST00000372499 Somatic Capillary sequencing 66812177 PD4006a 14 39677450 39677450 ACCAAAATCAGGAAAGGACAAAACC A - AAAAAGAAAACTACAGACTGATAAC deletion Somatic Capillary sequencing 67246128 PD4006a 1 156195615 156195615 CAGAGCCTGATTCTGTGCTTAAATA T - TTTGAAGTCAAATTTATTTAAATAT deletion homo_sapiens_core_58_37c PMF1 ENSG00000160783 CCDS30886.1 ENST00000368277 Somatic Capillary sequencing 66819445 PD4006a 14 94046589 94046589 ATAAACAATGTCTTCCAAGCCCCCT G - GGGGGGATCCCACACCTGCCAGAAG deletion homo_sapiens_core_58_37c KIAA1409 ENSG00000133958 CCDS9911.2 ENST00000256339 c.1997delG p.G668fs*34 Somatic Capillary sequencing 66726647 PD4006a 4 165341589 165341590 CCCGTGATTCTAAAAAAAAGTTAAA - AT TATATATATATATGAAGGAAAAATT insertion Somatic Capillary sequencing 66897336 PD4006a 1 46372359 46372363 TTATATAAGTTTGTAACATATAATA ATTAT - ATTATATGTTTATATAATGTTATTA deletion homo_sapiens_core_58_37c MAST2 ENSG00000086015 CCDS41326.1 ENST00000361297 Somatic Capillary sequencing 67357249 PD4006a 17 49119546 49119572 AGAACTCAAAATATCTTTCTCCCCA CCACCCAAGTAAGAAAGCTCTGTTTTT - CTACAGAACCACTATATGAGTTCCT deletion homo_sapiens_core_58_37c SPAG9 ENSG00000008294 CCDS45740.1 ENST00000262013 Somatic Capillary sequencing 66898285 PD4006a 1 54873975 54874001 GGGAGAGAAGGAAATAATTACAGTT ATTTTTTCCCCTAGGCGGTTTAATTTA - ATAGGGCTAACTTAAGGTACCTTAG deletion Somatic Capillary sequencing 67388982 PD4006a X 72325397 72325422 AAAATGATGATAAACTCACAGCTGC AAGAAGTTCTATGAACTCCAAACAGG - AAGCAAAATGAAGGGCTCACCAAGA deletion Somatic Capillary sequencing 66901315 PD4006a 1 77794500 77794500 CCACAGGATCATGGAAATGGATAGT G - TCTTAGTTCCTTTTATGCTGTTATA deletion homo_sapiens_core_58_37c AK5 ENSG00000154027 CCDS676.1 ENST00000344720 Somatic Capillary sequencing 67392709 PD4006a X 114290556 114290557 AGAAGATGGATTAGAGGGAAGAAAA AT - ATGACAGAGAGAAGGGAGAGAGGAG deletion Somatic Capillary sequencing 67011738 PD4006a 6 23958391 23958391 GTAAAATACAAATTAAATATGGCAA T - ATAAGGAGTAATTCCACTTTTGTCT deletion Somatic Capillary sequencing 66926962 PD4006a 8 92669254 92669273 TATCAAGGTACAAATGAACTCCAAG TTAACATACCCAATGGACGC - TTCCTATTCACCCCTTATTAGCTCT deletion Somatic Capillary sequencing 66732658 PD4006a 12 12269636 12269684 GTTAGGTCTGTACTCTGCTTCTAAA TACAAGACATCATTTAGTTTGTAATTCTATCTGTAAAGTCATGGAGATT - TTTTTCAGCAATAAACTCAACAATT deletion homo_sapiens_core_58_37c LRP6 ENSG00000070018 CCDS8647.1 ENST00000261349 c.? p.? Somatic Capillary sequencing 67019386 PD4006a 6 8984791 8984792 TTATTCACAAGATAATGCCCTGTAC - T CTCTTATTTTTATGAAGGATAATTG insertion Somatic Capillary sequencing 67315791 PD4006a 7 37440069 37440071 CATGTATTTTTCTATTCCATAAAAT TAC - TTCAGGGCATATATGCAAATTACAA deletion homo_sapiens_core_58_37c ELMO1 ENSG00000155849 CCDS5449.1 ENST00000310758 Somatic Capillary sequencing 66735289 PD4006a 12 28838613 28838613 ATGAGATTTGGGTGGGGACACAGCC A - AACCATATCAACTAGTATCCACCAT deletion Somatic Capillary sequencing 66978390 PD4006a 5 123977202 123977202 TCGACAATATTGTGTTAATGATTAA A - AAGTAAATATAAAGATACAATTCTT deletion homo_sapiens_core_58_37c ZNF608 ENSG00000168916 CCDS34219.1 ENST00000306315 Somatic Capillary sequencing 66929411 PD4006a 8 109763195 109763195 CTGCTCTCAAACTTGCTTTCATCTC T - TTTTCTGCCCTATGACCCTTAGTCA deletion Somatic Capillary sequencing 66931574 PD4006a 8 126914316 126914340 GAGGCTAAAAATAATCTTCTTGAGG GTCTTGTCAAACTACATATGCTGAA - GTCTTCTGCATTCTCTTCCTCACTG deletion Somatic Capillary sequencing 67203631 PD4006a 10 103811738 103811763 CAAATTGACAGTATTTCAGGAAATT CTGATTAGAAACCACATTTTCTGACA - CATCCCAGAATGAAAATTCATGGTA deletion homo_sapiens_core_58_37c C10orf76 ENSG00000120029 CCDS41563.1 ENST00000370033 Somatic Capillary sequencing 66929578 PD4006a 8 111847425 111847425 CAAGGTTCTCTATGAAAGAAAATTT G - TTTGAAGAGAGTCTTGAGACTAAAG deletion Somatic Capillary sequencing 67372021 PD4006a 10 19458291 19458291 TACACAATATATAAAAATAGATACA C - TTGCACAGATACATACATGGTAATA deletion Somatic Capillary sequencing 66853919 PD4006a 6 63925135 63925150 GGGCTCAGCTTTTGGATGTGAATCT TCTGGGCCAGTGGCCA - CTTAAATAAAATCCTCCTGTTTCAC deletion Somatic Capillary sequencing 66761526 PD4006a 11 122482022 122482022 CGGGATGGATAGGTGAAACATGGGA T - TTTTAGGGCAGTGAAACTACTTATT deletion Somatic Capillary sequencing 67164876 PD4006a 9 135791425 135791466 AATGAGAATCATAATAAAAGAGGAA TACATTTAAATGTTTTATTTTAATCAAAGTAATTTATGCACT - TACAGTATTTCCCTGCTTCTTAAAA deletion homo_sapiens_core_58_37c TSC1 ENSG00000165699 CCDS6956.1 ENST00000298552 Somatic Capillary sequencing 66984024 PD4006a 5 174443618 174443631 GGAGTCTTTAGCTTAATGGAGCTTA GTTTCTCTATTTCT - GTTTATGATTAGTTAGTGATGGATT deletion Somatic Capillary sequencing 66974870 PD4006a 5 90032734 90032764 TTTTCTTTTAAAAAAAAACAATTCT TAGTTTTATTTATTTTTTTCTATTGTTTTTC - TAGTCTTTTATTTATTTTTGCTCTT deletion homo_sapiens_core_58_37c GPR98 ENSG00000164199 CCDS47246.1 ENST00000405460 Somatic Capillary sequencing 66741393 PD4006a 12 32325998 32325999 GGCAGAGTTTTTTTTTTTGTTTTTT - G GGAGACAGCGTCTCACTCTGTCGCC insertion homo_sapiens_core_58_37c BICD1 ENSG00000151746 CCDS8726.1 ENST00000281474 Somatic Capillary sequencing 66930730 PD4006a 8 120146964 120146965 TATGTATGTATAAATATGGATATAA AT - ATATGTGTGCATGTGCTCATTTTGA deletion Somatic Capillary sequencing 67228707 PD4006a 2 67101500 67101533 TATTCCAAAAGATCATTTATTGCTC TTGAGAGTGCTTTTCTGAATGACACGGTTCTTAT - TTGAGTTTGTATCACCTTCCTTTTG deletion Somatic Capillary sequencing 66792501 PD4006a 12 88498986 88498986 CAAGTCAAGCTTTGAGGCTTCGTTC A - AAAGACTAATGAATTTTTGTCAAGA deletion homo_sapiens_core_58_37c CEP290 ENSG00000198707 ENST00000309041 Somatic Capillary sequencing 67221373 PD4006a 2 16088991 16088991 AAACTACAATTCCTACTATGCTCTC T - TTTTGCTCGGGCTGCTGGGAAGCTC deletion Somatic Capillary sequencing 66921837 PD4006a 8 52335694 52335710 TAAATGCCTGGAAACACTGAGATAT TTGTTCTAGTGGTTGTA - AAGTTTACTTGGGAGTTTGATGGAT deletion homo_sapiens_core_58_37c PXDNL ENSG00000147485 CCDS47855.1 ENST00000356297 Somatic Capillary sequencing 66742552 PD4006a 9 6513693 6513720 TGACATCCATCTAAGTTATTGCATA TATCAAATAGTTTCTTTCTTTCTTATTG - TTGAGTAGTATTCCAGTTTATTCAT deletion Somatic Capillary sequencing 66907768 PD4006a 1 72901267 72901269 TCCAAGGATTTCTTGGAAATAGGAA TAC AG AGACATACATTTTAGAATGGATAGA complex Somatic Capillary sequencing 67131581 PD4006a 18 31540616 31540630 TATTATGCATCAGGCACTATTCTAA GCCTTTTAAATATAT - GACTCATTTACAATGAACTGGTTAA deletion homo_sapiens_core_58_37c NOL4 ENSG00000101746 CCDS11907.2 ENST00000261592 Somatic Capillary sequencing 67195776 PD4006a 10 45787682 45787698 GCTCTCCTCACTCCTGGGACTGAAT GAGCTCAGCCCTTTATG - GGCACAGATTCAGCCCATTGTTGTG deletion Somatic Capillary sequencing 67006975 PD4006a 17 14936050 14936051 AAGCTAAATGTATTTAATAAAAAAA - A ACAGGGCTAACTCACAGAACCTAAG insertion Somatic Capillary sequencing 66765377 PD4006a 11 73931743 73931744 GATTGCTGACTGGCACATAGATTTA - ATT AGACATTAGCTCCTACTGCTATTGT insertion homo_sapiens_core_58_37c PPME1 ENSG00000214517 CCDS44678.1 ENST00000398427 Somatic Capillary sequencing 67087913 PD4006a 3 127221492 127221520 AACATCTTCTATCAATAAAGAGATT GAAGTTATTTTAAAAGAACCCCAAGAAAA - GTCTAGAGTTGAAAAATAGAGTAAC deletion homo_sapiens_core_58_37c ENSG00000230883 ENSG00000230883 ENST00000455379 Somatic Capillary sequencing 66743650 PD4006a 9 13558303 13558306 AGAAAAGTTTTTTTTAAGACAGAGT CTCA - CTCTGTCACCCAGGCTGGAGTGAAA deletion Somatic Capillary sequencing 67015776 PD4006a 6 50442740 50442740 GGAGTACAAAAGAGGGCAAGAAGAC A - GGGGGAGAAGTACTTGAAGGAATAA deletion Somatic Capillary sequencing 67283944 PD4006a 7 125921645 125921645 TTATGTAATGGCCTTCTTTGTCTCT C - TTGATCTTTGTGGTTTAAAGTCTGT deletion Somatic Capillary sequencing 66778222 PD4006a 11 42159899 42159899 TTTTATTTTAATTAAAAAATACTTT A - AATATGTATTTCTCATTGCATACAA deletion Somatic Capillary sequencing 67137159 PD4006a 18 70869580 70869582 TTAAATTTTTTTCCGACCACACCTA CTC - CCCTTGCTCCCCAGAGGCAGCCATT deletion Somatic Capillary sequencing 66929543 PD4006a 8 111657099 111657099 GTCATCCCCACATCTCAGCTTAAAC T - TTTTTTGGAAAACCTTCAGTGAAAA deletion Somatic Capillary sequencing 66745442 PD4006a 9 27413225 27413239 TAGCCCAATTGTAGATCTTAGCACA GCAGAGAGGTCGGGG - GCAAAGGGACAGGGAGGAGTCTTAT deletion homo_sapiens_core_58_37c MOBKL2B ENSG00000120162 CCDS6520.1 ENST00000262244 Somatic Capillary sequencing 67350913 PD4006a 18 10875179 10875179 TCGCCTCTAAACTCTTACCCCATTT A - AAAAAATGCTTGTGTTAAAGGTCTT deletion Somatic Capillary sequencing 66963616 PD4006a 13 55045939 55045940 ATTTCTATTTGATAGTACTTTTTTT - T GTTGCAAGTGACATAAGCCCATCAT insertion Somatic Capillary sequencing 67416561 PD4006a 20 51483688 51483689 GAAACCCTTCATTCAAAGCAACTGC TT - TGATTCCATATGTATTCCAAAGAAC deletion Somatic Capillary sequencing 66760885 PD4006a 11 117188880 117188880 GACGTCTGGCAGCCCATTTGGAAGG A - AAAAAAACCAAATCCAATTTCATTC deletion Somatic Capillary sequencing 67015438 PD4006a 6 47683955 47683981 TTCTCCTTTCTCAGCAAGCTCTTCC TAAAATTTTAATCTGATGAGTGTTTCT - TCACCATGAACTCTCCTTAGATTGA deletion homo_sapiens_core_58_37c GPR115 ENSG00000153294 CCDS4922.2 ENST00000283303 Somatic Capillary sequencing 66863495 PD4006a 6 133216078 133216100 AAGCAAACTGGAAAAATAAGGGATT GGGGAAAATTCTGAGTTTGATAA - CTTAGGAGTCTGCCTTTTGGCAAAA deletion Somatic Capillary sequencing 67130493 PD4006a 18 23417700 23417718 TCTGTAATCCCAGTGTTTTGAGAGG CTGAAGCAGGAGGATCACT - AGGCACCAGGAGTTCAAGACCAGCC deletion Somatic Capillary sequencing 67300370 PD4006a 7 147898916 147898917 ATTACACCTTGAACTATTAAAAAAA - A AAGACATTAGAAAGAAGTGATTACT insertion homo_sapiens_core_58_37c CNTNAP2 ENSG00000174469 CCDS5889.1 ENST00000361727 Somatic Capillary sequencing 67083818 PD4006a 3 96357163 96357165 AAGGACATGAATAGACACTTTTCAA AAG - AAGATATACACGCAGCCAGCAAACA deletion Somatic Capillary sequencing 67152609 PD4006a 19 37495646 37495647 TTGTGTTCCAATAAAACTTTATTTA - A AAAAATAATCAGAAGGCCACATTTG insertion Somatic Capillary sequencing 66944128 PD4006a 8 138789431 138789432 CCTGGTTACAGCACTGTACATTGGA - T TTTTTTTCAGTACGTATGTTCAAAG insertion Somatic Capillary sequencing 66739788 PD4006a 12 21247775 21247776 TGGTGGTTCATTTGAGAGCTTTTTT - T TTTTTTCATGTAGATATCTATTGCT insertion Somatic Capillary sequencing 66711034 PD4006a 4 175694693 175694693 AGGGAGTGTTGTATTAAAGTTTTAT C - TTTTTAAAGACACAGAATGCAACTA deletion homo_sapiens_core_58_37c GLRA3 ENSG00000145451 CCDS3822.1 ENST00000274093 Somatic Capillary sequencing 67256696 PD4006a 1 230650442 230650442 TCCACAACTGCCAGAAATAAATTCC T - TTTTTTTATACATTATCCAGTTTCA deletion Somatic Capillary sequencing 67053122 PD4006a 2 148192761 148192761 TTATTTTCCCTACTGAAATAAGTCC A - AAACATGTGTGTGTACACACACATG deletion Somatic Capillary sequencing 67122411 PD4006a 8 30666942 30666943 GAACTAGAAACTAAGGTCAGAAAAC AT - ATATATGTATATATACTCATACATA deletion homo_sapiens_core_58_37c PPP2CB ENSG00000104695 CCDS6079.1 ENST00000221138 Somatic Capillary sequencing 67131224 PD4006a 18 28578166 28578166 ATCTGATCTGATCTGATATTCCAGG T - AAAAATGATAAGGACCTAAGCCAAG deletion homo_sapiens_core_58_37c DSC3 ENSG00000134762 CCDS32811.1 ENST00000434452 Somatic Capillary sequencing 67275297 PD4006a 7 63502405 63502405 GGGAGACCCTGCCAGAAAGGATTTT G - TGGATGGGAGTGAGCCTGGGATGGG deletion Somatic Capillary sequencing 67389876 PD4006a X 81817347 81817347 CATGTTTTTAAATAACCCGTGGTTC A - AAAAAATTAAATGTAAAAATCATTT deletion Somatic Capillary sequencing 66818546 PD4006a 14 87611272 87611272 ATCATCTGAATTGTGTGACTTTTGA T - TTATATCAATGACATTATATTGTAC deletion Somatic Capillary sequencing 66704675 PD4006a 4 127129939 127129941 TAACAAGCTAAGAAAAAATCTGGCT GAG - GATGGTGGCTCACACCTGTAATCTT deletion Somatic Capillary sequencing 66735384 PD4006a 12 29368244 29368257 CCTCATGCTTTTGTCTTGTATGTCC AACAAAGAGGTAGA - AACAAAGAAAGGGAAAGAAAAATAA deletion Somatic Capillary sequencing 67202057 PD4006a 10 91751913 91751914 GGGTTACTATTTAAATTTATAAGAA AC - ACATACAACTCAATATCAAAAAAAC deletion Somatic Capillary sequencing 67053062 PD4006a 2 147518236 147518238 GAAGAATACAGTATTTTTTCTTTTC CTT - CTTCTTCTCCAATTTCATCTTGCTT deletion Somatic Capillary sequencing 66928722 PD4006a 8 105037405 105037405 ACTTTTTAAAATAACTTGGTATGTT A - AAATTGCTTAGAACAAATAGTTGTC deletion homo_sapiens_core_58_37c RIMS2 ENSG00000176406 ENST00000507740 Somatic Capillary sequencing 67390957 PD4006a X 93618053 93618053 GATAATGGGTGAGATAGCAAGTTAG A - AAAAAAATGCCTTTTAACAGTTGCC deletion Somatic Capillary sequencing 66746396 PD4006a 9 33972388 33972401 TAATGAGCAGGGCTATGTCTTAAAG TGCTCCTGAGAGTT - TGCTCCCTGTGTTTTCATCCCTCCT deletion homo_sapiens_core_58_37c UBAP2 ENSG00000137073 CCDS6547.1 ENST00000379238 Somatic Capillary sequencing 67285458 PD4006a 7 135810421 135810421 AGCCAAACCTTATCAAGTGAGGACT C - CTTTTTTCAAACCATGAGTGAATGT deletion Somatic Capillary sequencing 67092444 PD4006a 3 164298107 164298154 TTTTACCGATGCTGAATCATATTTT TCCTTCATGACAAAATGATACTTCAATTCTCTAAAAACTTCATCAAAG - TAAATTCTAAGTATATAAGTATATT deletion Somatic Capillary sequencing 67256940 PD4006a 1 232194168 232194212 GTGTTGGGTGAGTGTCCCCAGAAAC TGATCCTGAGACAAAGATTTAGGTGTGAGTGGTTTATTTGGGAGG - TGATTCCTGGAAGCATCTGTGGAGG deletion Somatic Capillary sequencing 66903424 PD4006a 1 92841538 92841585 CGCCATTGCACTCCACCCTGGGTGA CAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAATTAAAATATT - CAGGGAAAGAAAAAACTGCATCTGC deletion homo_sapiens_core_58_37c RPAP2 ENSG00000122484 CCDS740.1 ENST00000370343 Somatic Capillary sequencing 66892669 PD4006a 1 11532017 11532017 AGTACTGTCAGGAGGAAACCACACC A - CCATGCTCACCCGCCCTGGGCCTCA deletion Somatic Capillary sequencing 67152549 PD4006a 19 37175226 37175227 AGTGTTCAAAGTGCTTTACTTTAAG - T TTTTTTAATATTCTCCAATCTTCTG insertion Somatic Capillary sequencing 66928714 PD4006a 8 104937586 104937586 ATGCCCATTTAAAAGGAATACATAA T - TTAAGGAGAGGTATGTGTCCTTTCT deletion homo_sapiens_core_58_37c RIMS2 ENSG00000176406 ENST00000507740 Somatic Capillary sequencing 67036039 PD4006a 5 15618761 15618780 AGGGAAGTATTCTCTGACCTCTAGA GGGTGGATCTCAACTATGGT - GCATAACTTTCTTCTCACTGGGAAA deletion homo_sapiens_core_58_37c FBXL7 ENSG00000183580 ENST00000504595 Somatic Capillary sequencing 66923974 PD4006a 8 69648833 69648833 TTTATAATAAATCAATATAATACAA T - AAAATGAAACATAATTTTTATCGTA deletion homo_sapiens_core_58_37c C8orf34 ENSG00000165084 CCDS6203.1 ENST00000337103 Somatic Capillary sequencing 67313115 PD4006a 7 18626709 18626728 GTGAGACATGTTTCCCTAAATACAG GGCAATACTGATAAGTTACT - GCTTTAGATACTTCTTTTCATTTAT deletion homo_sapiens_core_58_37c HDAC9 ENSG00000048052 CCDS47554.1 ENST00000406451 Somatic Capillary sequencing 66787090 PD4006a 12 42821130 42821164 TAAGAATTTTGCCTTTTTAAGCAAA AAGAAAAGTCTGGAGGCATCACATTACCTGATTTC - AAACTATACTGTAAGGCCATAGTCA deletion homo_sapiens_core_58_37c PPHLN1 ENSG00000134283 CCDS31777.1 ENST00000395568 Somatic Capillary sequencing 66758376 PD4006a 11 98121438 98121438 TTGTATCTTTTTATTTGAATAATTT C - TTTTTATATTTTTTTGGGGGAGTCA deletion Somatic Capillary sequencing 67198526 PD4006a 10 66483732 66483732 TATTTTGTTGATCAAATTGTTTAAG C - TTTGGCCCATTGTGAAATCCTGTTT deletion Somatic Capillary sequencing 66795616 PD4006a 12 114790219 114790219 TCTCTGCAATACTTTTCCTCCCAAA C - TTTTACCTGATTAATTCCTACTCAT deletion Somatic Capillary sequencing 66787015 PD4006a 12 42296680 42296680 GATGCTACTCAACCTCCTACACAAA G - CAATTTTAAATCTAAATTAAGTAGG deletion Somatic Capillary sequencing 67281407 PD4006a 7 105645187 105645233 CATTCTATCTCTTTGGTGGCCCTCT GCCCTTCTGCTTCTCTGGTATATTCTCAGGAGAATTATAAGCATTTG - GAGAAACAGCTCAGTAGAATAAATC deletion homo_sapiens_core_58_37c CDHR3 ENSG00000128536 CCDS47684.1 ENST00000317716 Somatic Capillary sequencing 67396486 PD4006a X 85311446 85311462 TCATCCTATAGGCTTCATTCCATAG GCAGTCTCTCTATTTGT TCATTCCATAGG CAGAGAAAATAGCTGCTAGAAATAC complex Somatic Capillary sequencing 67176624 PD4006a 3 19489226 19489226 TAAGTAGAGCTCTTATCTTCCAAAT A - AAAGACTTAAGCATCAGAACTGCTG deletion homo_sapiens_core_58_37c KCNH8 ENSG00000183960 CCDS2632.1 ENST00000328405 Somatic Capillary sequencing 66753251 PD4006a 11 55412419 55412419 TATATGGCATTTTGGAAAAGGTAAA G - TTATCGAGATAGTAAAACTGTGTTT deletion Somatic Capillary sequencing 66964185 PD4006a 13 60126468 60126469 TGAGACTTAAAAAACAACACAGAAG - T TTTTTTTGTTTTTTTCTGAAAAGAT insertion Somatic Capillary sequencing 67268502 PD4006a 1 202558844 202558845 GACCCTCAGGTGATAAATCCCAGTC - CC TCTGCTGAAAGGCTCATGCCCCTCA insertion Somatic Capillary sequencing 67146470 PD4006a 19 31829394 31829416 GTGGAAGTCTTTACGTTTCTTCATT CTCACACTACTAACCAAGCCAAC - CAAAAGATTTTTTTAATAGTTATAT deletion homo_sapiens_core_58_37c TSHZ3 ENSG00000121297 CCDS12421.2 ENST00000240587 Somatic Capillary sequencing 67254380 PD4006a 1 214613112 214613112 CTACTGTTTACTTGCAATGTCTCAA T - TTTCCACCCTTCTAAAGGACTCAGT deletion homo_sapiens_core_58_37c PTPN14 ENSG00000152104 CCDS1514.1 ENST00000366956 Somatic Capillary sequencing 67328461 PD4006a 15 27220080 27220081 CTGTTGCCCAGGCTGGAGTGCAGTG AC - ACTATCTCGGCTCACTGCAACCTCT deletion homo_sapiens_core_58_37c GABRG3 ENSG00000182256 CCDS45195.1 ENST00000333743 Somatic Capillary sequencing 67256686 PD4006a 1 230547595 230547613 CGTCAACAAATTAATTATGGAAAAG ACTACAGAATCATAGGAAT - AATAGCAACAAATGCTAAAAAGGCA deletion homo_sapiens_core_58_37c PGBD5 ENSG00000177614 ENST00000391860 Somatic Capillary sequencing 67228791 PD4006a 2 67663722 67663724 TGAAGAGGAGCTGAAATGCTATGTT GTC - GTATTCTGTCTGGAAACATAGGTAT deletion Somatic Capillary sequencing 67204706 PD4006a 10 112024243 112024246 GGTTTAAACGATTCTCTTGCCTCAG CCTC - CCGAGTTGCTGGGATTACAGGCACC deletion homo_sapiens_core_58_37c MXI1 ENSG00000119950 CCDS7563.1 ENST00000332674 Somatic Capillary sequencing 67391979 PD4006a X 104655022 104655022 AAAAAAATAAAGAGAGACTATAGGA G - GAGGCAACACCAAGAGAAAGAGAGC deletion homo_sapiens_core_58_37c IL1RAPL2 ENSG00000189108 CCDS14517.1 ENST00000372582 Somatic Capillary sequencing 67336630 PD4006a 15 88395478 88395478 TCCTGGGAAAAGCAGCATCCTGTCA T - TTTTTTTAATTGCAAGTATGTATTT deletion Somatic Capillary sequencing 66745660 PD4006a 9 29030643 29030657 GATGAGATTCTTCTCATTCCATTAT ATCAAGAAGTTCATG - ATGTCACTGTCTTACCAATGGTAAT deletion Somatic Capillary sequencing 67060064 PD4006a 2 198793971 198793972 ATCCTTCTGGGGTCCTGGAACCAAT CC - CCCATGGATATGGAGGGCCGACTGT deletion homo_sapiens_core_58_37c PLCL1 ENSG00000115896 ENST00000428675 Somatic Capillary sequencing 66900407 PD4006a 1 70295620 70295620 GGCCCTTTTCTCTATTAGAAACTAC A - AAATGTACCATAAAATTAATGATAA deletion homo_sapiens_core_58_37c LRRC7 ENSG00000033122 CCDS645.1 ENST00000035383 Somatic Capillary sequencing 66921783 PD4006a 8 51317592 51317592 AATATTCCATTGTGTATTTATACCA C - CTTTTGTTTATCTTCTCACTCGGTA deletion homo_sapiens_core_58_37c SNTG1 ENSG00000147481 CCDS6147.1 ENST00000338349 Somatic Capillary sequencing 67405492 PD4006a 16 13557904 13557907 GCATCCTCTTTTCTCCTCATTCCAC TACT - TGTCTGTCATGAGAATTACACAGAA deletion Somatic Capillary sequencing 66897764 PD4006a 1 50194729 50194748 CACACAATCATGAACCGGGGAGGGC AGAGAATTAAACCTTATCTA - AGAGCTGTCAATAAATCTATTGTTA deletion homo_sapiens_core_58_37c AGBL4 ENSG00000186094 CCDS44137.1 ENST00000371839 Somatic Capillary sequencing 66892382 PD4006a 1 9263221 9263221 CCTCTCCATCCACTGGCAAATTCTC A - ACCGTTTGGGAAATCTCTATTTTTG deletion Somatic Capillary sequencing 67015341 PD4006a 6 46989187 46989218 TCTCAGCTAACTACAAACTCCACCT CCCGGGTTCAAGCAATTCTCGTGCCTCATCAC - CTGAGTATCTGGGATTACAGGTGTA deletion homo_sapiens_core_58_37c GPR110 ENSG00000153292 CCDS34471.1 ENST00000371253 Somatic Capillary sequencing 66924363 PD4006a 8 72406691 72406723 TTTAAATGAAGACGTAATCAATAGG TTAAGATAAATTATTTTTACTTATGCATTCATA - TTACTCTTATGGCCTCAGCAATGTA deletion Somatic Capillary sequencing 67395602 PD4006a X 145288310 145288313 ATATAAAAAGATTTCCACTTTCTCC AGTT - AGTGATAACGTCTTCCTCAGTTTCT deletion Somatic Capillary sequencing 66900154 PD4006a 1 68314356 68314358 CACAATTCTCTGGAGATTTATCCAA GTT - GTTGTGTTTATCAACAGTTGATTCC deletion Somatic Capillary sequencing 67015552 PD4006a 6 48495729 48495770 TATTTGTTTTTAAAAGAGTGTCCTG TAACTTCCCTTTTTAAAACTATCTTTGAAAAGACTTAGTTTT - TTTTTTTTAATTTAAAAAAAGGTCA deletion Somatic Capillary sequencing 67356387 PD4006a 17 42752731 42752749 TTTATTCGTTAATATGAAATGTTGG TATTATGTGACTCAGAAGA - TCTTGGGTTTTAACATTTCTAGCAT deletion homo_sapiens_core_58_37c C17orf104 ENSG00000180336 ENST00000409122 c.? p.? Somatic Capillary sequencing 67335822 PD4006a 15 82282144 82282145 GAAATAAAATTCTACAGCCAGAAAC AG - AGAGAAATTCTGTTCTTAATCTTTA deletion Somatic Capillary sequencing 66899800 PD4006a 1 65981122 65981126 GGAATGACAAAACCATTTTTTGTGT AGGTA - AGTGTTCATATAACTGTTCTCTAAA deletion homo_sapiens_core_58_37c LEPR ENSG00000116678 CCDS631.1 ENST00000349533 Somatic Capillary sequencing 66934142 PD4006a 8 79907291 79907316 AAAAGATTAATTGCCAGAATATATA AGTAACTGAAACAACTCAATAGCAAA TATATATTAATTGCC AAAATCAAATAATCCAGCTAAACAA complex Somatic Capillary sequencing 66932231 PD4006a 8 132170134 132170151 CTCTCCAGGGATGCAATATTGTTTT GGATTTACTATTTTTCTA - GGTAGAGGCAGCTCTAATGGTTTCC deletion Somatic Capillary sequencing 67198099 PD4006a 10 63941240 63941261 CGGATCACGAGGTCAGGAGATCGAG ACCATCCTGGCTAACACGGTGA - AACCCCGTCTCTACTAAAAATACAA deletion Somatic Capillary sequencing 66815839 PD4006a 14 69021406 69021409 TACTAGTATTTCATTCATTTTCTTG TTTC - TTTTTGTTTTCTCTACCATAATGTC deletion homo_sapiens_core_58_37c RAD51L1 ENSG00000182185 CCDS9789.1 ENST00000487270 Somatic Capillary sequencing 67131275 PD4006a 18 29083350 29083384 AGATGATATGAAGAGAAATAGATTC TAGGTAGAGAGAAGAGCATCTAAAAGGCCTGAAAA - TGATAGTTCATGGTTCTGCAGAGGA deletion homo_sapiens_core_58_37c DSG2 ENSG00000046604 CCDS42423.1 ENST00000261590 Somatic Capillary sequencing 67264769 PD4006a 1 172246131 172246132 AGTTCATTATGTTTTCTTTAAAAAA - A ATGTGGCTAGAAAACTGTCTCTGAG insertion homo_sapiens_core_58_37c DNM3 ENSG00000197959 CCDS44276.1 ENST00000367731 Somatic Capillary sequencing 67174180 PD4006a 3 790973 790973 TCAAAAGCTGTATCCACATATTACC A - AAAGAAACTGGTGATTTTATTTTTT deletion Somatic Capillary sequencing 67040553 PD4006a 5 45733119 45733122 ATCAGAAAAGAAAAACTGTATTTTG TTTA - TTTATTTATTTATTTATTTATTTAT deletion Somatic Capillary sequencing 66897350 PD4006a 1 46559314 46559340 TGGTGGCTCATGCATGTAATCCTAG CACTTTGGGAGGCCTACGCGGGCAGAT - CACTTGAGTCCAGGAGTTTAAGACC deletion homo_sapiens_core_58_37c PIK3R3 ENSG00000117461 CCDS529.1 ENST00000262741 Somatic Capillary sequencing 67017597 PD4006a 6 20007576 20007611 GTGGTAAATATTTTTTCCACATTTT GCCAACTTTTTTCTTTTTCATTGAGGAGCTTCTCTG A CAAGACCAATAGCTCTATGCCCTTG complex Somatic Capillary sequencing 66791447 PD4006a 12 79346674 79346674 ATTTTTGTTTTGTTTTGTTTTTCTT A - AGCTGACTATTAAAAACAAAGTAAG deletion homo_sapiens_core_58_37c SYT1 ENSG00000067715 CCDS9017.1 ENST00000261205 Somatic Capillary sequencing 67137892 PD4006a 18 75452991 75452991 TGTGGGTTAACCTAAAAACTGAAAA G - TTTTAAGCACGTATTTCGGTGTAAG deletion Somatic Capillary sequencing 66944917 PD4006a 13 19516017 19516038 ACTGCTGTTCTGTAATCTACAAACC ATTATGTACATTATGAATTACT - ATTAATTTTGTTATATAATCTGATG deletion Somatic Capillary sequencing 66938295 PD4006a 8 84412903 84412904 TCCTGTGGACAGAAATCAGCATTTG - A AAAAATTCTGTAACAGTAAGATTAT insertion Somatic Capillary sequencing 67009081 PD4006a 6 7619558 7619585 AACACAGAAGGCACCCAGGAAAAAC GGGTTGAATGATTCCATGCAGGAATCTA - GGAGGCTGAACTTCAGCTTTAGAGT deletion Somatic Capillary sequencing 67060235 PD4006a 2 199875295 199875295 AATTGGTCATATAATCTCTTATGAT C - CTTTTTATATCTGTGGCATATATTG deletion Somatic Capillary sequencing 66843508 PD4006a 4 15537526 15537527 TGCTGGGTGGGATGGATGAAGTCAC CA - CACATTTGCCGCCATCTACCAGGAG deletion homo_sapiens_core_58_37c CC2D2A ENSG00000048342 CCDS47026.1 ENST00000424120 Somatic Capillary sequencing 67343933 PD4006a 15 60385952 60385953 TGGACTTTGGTGTCTGTGTGCCAGT - G TTTGCTCTGCCAGCAATGTGTTAGG insertion Somatic Capillary sequencing 67225323 PD4006a 2 44619093 44619121 TGGCTCTGAAATTCATCTTGAGCAA TTTGTATCATCTCTATGAACCTCAACTGT - TTTCATCTCTTAGGGCTGGCTGTGT deletion homo_sapiens_core_58_37c C2orf34 ENSG00000143919 CCDS1820.1 ENST00000378494 Somatic Capillary sequencing 66744776 PD4006a 9 22009994 22010038 AACCTGGCACACATAAGACAAAAAA AAATTATACTTTAAGAATCTGAGATCCCAGTTTCATCATATTTGT - ACAGTAAATCTTTGTTTGCACTCTT deletion Somatic Capillary sequencing 66696622 PD4006a 4 60716695 60716696 ATGTATTGACATCTACCACATCAAG TT - ATGTAAAAACAGTGGTTCCTGCCCA deletion Somatic Capillary sequencing 66809499 PD4006a 14 20255052 20255052 CTACATGGCGAAACCCGGTCTCTAC A - AAAAAACAAAAAAAAATTAGCTGGG deletion Somatic Capillary sequencing 66932329 PD4006a 8 132927312 132927312 TCATCCAGTCTGTCATTGATAGGTA T - TTAGGTTGATTCCATGTCTTTGCTA deletion homo_sapiens_core_58_37c EFR3A ENSG00000132294 CCDS34942.2 ENST00000254624 Somatic Capillary sequencing 67407595 PD4006a 16 28199099 28199100 AAGACAGTAAAAGGAACAAGAAAAC TG - TTGGTATCACTTTCAGTTTCTCAAG deletion homo_sapiens_core_58_37c XPO6 ENSG00000169180 CCDS42135.1 ENST00000304658 Somatic Capillary sequencing 66861307 PD4006a 6 115779427 115779427 TAAAAATGAATGAAACATTAAACCC A - AACTATCAACTTCTAGTAGATTTCT deletion Somatic Capillary sequencing 67206338 PD4006a 10 123122100 123122125 GGCTCATGACTGTAATCCCAGCACT TTGGGAGGCCGAGGCAGGTGGATCAC - TTGAGGTCAGGAGTTCGAGACCATC deletion Somatic Capillary sequencing 66732694 PD4006a 12 12502025 12502025 AGATATCGGCAATATTTACAGGGGG C - AAATCATAGCTACTGCTAATACTAC deletion homo_sapiens_core_58_37c MANSC1 ENSG00000111261 CCDS8648.1 ENST00000396349 Somatic Capillary sequencing 67122541 PD4006a 8 31472451 31472451 TTCTATGGTCGTGATTATAAACTTT C - CTTTGGTTTTAATTCTGTCTCAGGG deletion Somatic Capillary sequencing 67332075 PD4006a 15 57509151 57509179 GATGATTTACTGTTTTTGAAGAATG AGATTTTAATATCATATAATTATAGATAC - AGGCATAGAGTTTTGTTGTTGTTGT deletion homo_sapiens_core_58_37c TCF12 ENSG00000140262 CCDS10159.1 ENST00000267811 Somatic Capillary sequencing 66901776 PD4006a 1 80622934 80622934 TGTTATGAGATCAAGTTTTGTTTTG T - AAAGTTTAGTACAACAGAAGATTTT deletion Somatic Capillary sequencing 67095929 PD4006a 3 192908992 192909019 CACTCCCAGGCTTGGTTATGAAGCC TTGCATCTTGGTATAGAGCTCAACTTCC - TGTCCTAAGGCAACAAGTTGCACCT deletion Somatic Capillary sequencing 67178142 PD4006a 3 32664522 32664522 GTTTTCTAACAGGGTAATGTGAAAG C - GTTCTCTGACAGAGCTCATGTAATT deletion Somatic Capillary sequencing 66861134 PD4006a 6 114727980 114727980 AAAGTTCATTGTATCATTCTTATGG C - TTTGCATCCTCATAGCTTAGCTCCT deletion Somatic Capillary sequencing 67284392 PD4006a 7 129013889 129013905 GTGTTTTAGAATTGTGACTTGATCA GGGCCCCAAGATTATCC - GGGATGATGTCATTTCTAAGATGTA deletion homo_sapiens_core_58_37c AHCYL2 ENSG00000158467 CCDS5812.1 ENST00000325006 Somatic Capillary sequencing 67313637 PD4006a 7 22477690 22477709 ATTCCATAGGTTTCTTTTTCATTTT GTCGATCGTTTCTTTTGCTG - TGCAGAAGGTTTTTACTTTACCTGA deletion homo_sapiens_core_58_37c ENSG00000105889 ENSG00000105889 ENST00000406890 Somatic Capillary sequencing 67197962 PD4006a 10 62886765 62886784 CTTTTCTTTATAAATTACCCAGTCT CATATATTTCTTCATAGCAG - CGTGAGAACAAACCAATTACCATAA deletion Somatic Capillary sequencing 67272148 PD4006a 1 232086389 232086390 CTTGTGCGGATTTATTAGACTGTGT - TG TTCAAGGGTGTCAGGAGATTGCATG insertion homo_sapiens_core_58_37c DISC1 ENSG00000162946 ENST00000439617 Somatic Capillary sequencing 67195784 PD4006a 10 46064986 46064986 TGAGGATTTTTGCCTCAATATTCAT C - AGAGATATTGGCCTGCAGTTTTCTT deletion homo_sapiens_core_58_37c Mar-08 ENSG00000165406 CCDS7213.1 ENST00000319836 Somatic Capillary sequencing 66956672 PD4006a 13 102648899 102648899 GATTTGGGGGATGGATAAAGAAAAA G - ATGAGATAAAATATAACTTGGGTTT deletion homo_sapiens_core_58_37c FGF14 ENSG00000102466 CCDS9500.1 ENST00000376131 Somatic Capillary sequencing 66948300 PD4006a 13 39060639 39060687 CTAAATATCCCTAGATTTTCATGTC TTCACCTGTAAAATTAAAAATGTACAGTAAGGGAATATTTAAGGACACT - TTCAGCTAAATTAGTATATTTTTAA deletion Somatic Capillary sequencing 66906715 PD4006a 1 116984533 116984563 AGGTTGATTCCATGTCTCTGCTATT ATGAATATTACTGCAATGAACATTTGCGAGC - ATGAGTTTTTATGGTAGAATGCTTT deletion Somatic Capillary sequencing 66866538 PD4006a 6 159768332 159768336 TTATTCAGATGACAGTAGATCTACC CGTCT - AAGCGTGCCATAACCCACCATCCAG deletion Somatic Capillary sequencing 66745096 PD4006a 9 24977182 24977199 AAGCAGGTGAGAAACTTAGTGGAGC AGTGCTTGAGCGTATTAA - AATGGAAACACGCGTGGTCTCCAGA deletion Somatic Capillary sequencing 69426689 PD3904a 4 14083035 14083054 AGAGCATCCAGTACTCATTTACAAT AAGCCAATCTGACTATTCAG CATTTACAATAAGCA ACCTGGGCTTGCTCTTTAAGCTTTT complex Somatic Capillary sequencing 69279680 PD3904a 8 110744818 110744827 GATTTAATATTTGAGAAGTGAAAGC TCTGTTTTCT - TCCTATTTCATGGGAATTGCTATCA deletion Somatic Capillary sequencing 69286749 PD3904a 8 48749474 48749485 TACCCCAGGAGCTCCCTGCAACCTG CCCATCATCCCA TTTAGGCTG CTGTTTAGGCTGCTGCGAGACAGGA complex Somatic Capillary sequencing 69301525 PD3904a 3 7330605 7330605 CTGATTTGAAGTTTTCTGGATGGAT C - CCACATGGACATGTTATCCTATCAT deletion homo_sapiens_core_58_37c GRM7 ENSG00000196277 CCDS43042.1 ENST00000357716 Somatic Capillary sequencing 69560469 PD3904a 1 177283613 177283613 ATTTCAGAAAGCAAAACACACAGAG A - AAGAAAGAGCGAGAATAGGAGGGAA deletion Somatic Capillary sequencing 69700814 PD3904a 7 21143559 21143568 ACCTTTGCCAATGCCTTGATTGCAG CCTGGTGAGA - CCTTGTACAGAGAACACATTTAAGC deletion Somatic Capillary sequencing 69024484 PD3904a 6 6552102 6552102 GCCAGTGCCCAACTTTTCAGCTCTG T - CCCCAGAGCCACGGTGATTGTTGAG deletion Somatic Capillary sequencing 69796276 PD3904a 12 7527050 7527051 TAGCAGCACAGACCTGAGCAGATGA CC - CCTGCGTCCTCCTTGTGCCTGCAGT deletion homo_sapiens_core_58_37c CD163L1 ENSG00000177675 CCDS8577.1 ENST00000313599 c.3396_3397delGG p.V1133fs*13 Somatic Capillary sequencing 69077590 PD3904a 4 85389448 85389470 TAGATTCTTCCCTTAAGGTTCAAAA GGCACTGTTTTGCTGGTCCCAGC - GACAACAAAAACTTCTCAGCTCTGC deletion Somatic Capillary sequencing 69720109 PD3904a 3 123801742 123801742 TGCAGGCATGATAAACAGAATCAAA G - CTTCTGCTGCTTGTTTCCAGTTAAA deletion homo_sapiens_core_58_37c KALRN ENSG00000160145 ENST00000448253 Somatic Capillary sequencing 69725957 PD3904a 3 162260811 162260811 TTCTGCCTTAGCCTTTGCCATATCA T - AGAACTAGATAGTTACCCAAGCAGC deletion Somatic Capillary sequencing 69673350 PD3904a 12 67267115 67267121 AAAGTCACACTGTAGAAGAGCATGT GAGGTGA - GAGATACTGTTCCATCCATCTTCGG deletion Somatic Capillary sequencing 69716161 PD3904a 3 98502717 98502732 TTTAAACCTTACAATCAGATGAACT GTACTACTCAAAAAAG - GTAAATTTAATGAATATAGGAGTGT deletion homo_sapiens_core_58_37c ST3GAL6 ENSG00000064225 CCDS2933.1 ENST00000394162 Somatic Capillary sequencing 69269738 PD3904a 8 58830798 58830798 ACAAATCTGGCAAAATTCTAAACAA G - TCAGAGATCAAAGAAGAATAATGCA deletion Somatic Capillary sequencing 69625311 PD3904a 1 77467905 77467905 AATTTCTTCCTGGTTTAGTCTTGGG A - GAGTGTATGTGTCGAGGAATTTATC deletion homo_sapiens_core_58_37c ST6GALNAC5 ENSG00000117069 CCDS673.1 ENST00000477717 Somatic Capillary sequencing 69777061 PD3904a 13 87491350 87491383 AACTATTCCTAACACCAGGATTTGT GCGTTTGTTTTCTTCCTCAAGAAAAATATAAACA - GCGAAAATGTTGCTGTAAGTTTCCC deletion Somatic Capillary sequencing 69829862 PD3904a 18 40765803 40765809 CTAGTTGGTACTCAACACTCTTCTC CCCTTAC - CCTCCTACCCAGAACCATCTTCCAG deletion Somatic Capillary sequencing 69400727 PD3904a 20 22436201 22436201 CTCTAAGCCACCTTACAGAGGGCTC T - TTTTCCCATGCTGTTTGTACACTCA deletion Somatic Capillary sequencing 69861179 PD3904a 5 25329849 25329849 ACTCCCTTTTTACTGGGTACCCTGA G - AGGAGCTCTGACTGCTGTTTTCCCC deletion Somatic Capillary sequencing 69731026 PD3904a 3 192835105 192835141 CCAAAAAGTGACTGAGGCAGATGTT TACATTCTTGTGAGGCCCTGATCAGCCTCTGAAAGTG - TACATTTTATTTATAAAAAGGTAAA deletion Somatic Capillary sequencing 69704145 PD3904a 7 40907257 40907263 ATACAGCAGTGAACTGAATAGATAA CTTCTTT - TAGTTTTGGTTTGTTGGAACATTTT deletion Somatic Capillary sequencing 69254640 PD3904a 2 85984221 85984228 ACGTGCTCAAGAGCACACACAAATG CATGGTCA - CAGAAGCACCTGTTCCTGTTTGTTT deletion homo_sapiens_core_58_37c ATOH8 ENSG00000168874 CCDS1985.1 ENST00000306279 Somatic Capillary sequencing 69774290 PD3904a 13 72629110 72629129 TTGCTTCAATGTTAATAAGGGATAT TTGTCTGCAGTTTTCTTTTC - TTGTTTTATCTTTACTGGCTTTGGT deletion Somatic Capillary sequencing 69860117 PD3904a 5 18710898 18710902 AGCCTGGAAAAGAACCCTGGGCCTA AAATG - AAATCACACCCCAGCCTGACACATC deletion Somatic Capillary sequencing 69573827 PD3904a 1 219470648 219470682 ATGATGCTTGTACATTTTGGTCCAA CTTTTAAATATTTCAATAAGACTGATTGAATTCTT GAGGA AGTAAATAGAATACTTCCTCTGTTC complex Somatic Capillary sequencing 69649241 PD3904a 20 40855120 40855142 TAAGTGGGAAAGCACTTTGGAAGAG ATAAATCCCTAAAAACAAACAAA - ATGCAATCATTAGCATCATCATCAA deletion homo_sapiens_core_58_37c PTPRT ENSG00000196090 CCDS42874.1 ENST00000373187 Somatic Capillary sequencing 69200172 PD3904a 8 35938032 35938032 TCACAGATCTAGAAAAAAACTATTT A - AAAATTCACATGGAACTAAAAAAGA deletion Somatic Capillary sequencing 69243776 PD3904a 2 19989221 19989228 CTGGTAGAGGATAGAGAGGGAGGGT GAAAGCAG - GGAGCAGGGAGAGCTTTGGGGTGGC deletion Somatic Capillary sequencing 69420272 PD3904a 4 17402092 17402092 GCACATCTCAGACCAATCATCTCTA T - TCCCAAAGGCCTTTGTCCTTTACTC deletion Somatic Capillary sequencing 69818506 PD3904a X 145007724 145007762 TCCCCAACCACAGGCTGAATAGCTC ATGGCTCCAAAAGAGATCCCTTCCTTCTCTTTGAGAAGA CAAAAGAGATCCCTTCCTTCTCTTT GAGAAGAAAGACTGGGGAGGACTTT complex Somatic Capillary sequencing 69223469 PD3904a 5 166641090 166641110 AAGAAAAATTTGTCTGGTGATTTCC AGGGAAAGCCATTCCCATTGT - AGTCTACAAACAATAAGAGTTGGGC deletion Somatic Capillary sequencing 69782562 PD3904a 13 111152817 111152822 CACTGCCCTACAGCACATAAAGCTC CATTAG T TGTCTTGTTGGCTGACAGCACAGGG complex Somatic Capillary sequencing 69138776 PD3904a 2 180344586 180344586 GTCTCAAAAAAATAAATAAATAAAT A - AAAAAGTTCATCTGTGGGTCACAAG deletion homo_sapiens_core_58_37c ZNF385B ENSG00000144331 CCDS33339.1 ENST00000410066 Somatic Capillary sequencing 69078545 PD3904a 4 91985651 91985651 TCTTTCTTCCGGCAATTAAATACAG C - AACACTTATGCAGTGTTTCTGCCCA deletion homo_sapiens_core_58_37c FAM190A ENSG00000184305 CCDS47099.1 ENST00000333691 Somatic Capillary sequencing 69539849 PD3904a 6 156698345 156698368 TAGCATAGAGGCCACCAATAGGCTG ATTTCTTTGCAAAGGAATTCGCCT - ATTTTAAGGGATTTTTTTTTAAGTT deletion Somatic Capillary sequencing 69781071 PD3904a 13 110122527 110122574 GGATTATGTTGTATTTGCGGCTACC TGTGGGCCTCTAGGGTCCCTTTTTGTATGATGTCCTTCAAATAAACAT - TGTCTCCATATGAATGACACAGGAA deletion Somatic Capillary sequencing 69848707 PD3904a 9 27700828 27700851 GTCTGCTTAAAGTCAGCAATCTGAA AAGGCCAGACTGAGTTCTTATGAT - AGAAATGACGTATGTATAAAACATT deletion Somatic Capillary sequencing 69137255 PD3904a 2 171198728 171198728 ATGTTAGTGCTTGTGGCGCATTATA T - TAGCTGACTTTTGTAGCTGCTGTGG deletion homo_sapiens_core_58_37c MYO3B ENSG00000071909 CCDS42773.1 ENST00000408978 Somatic Capillary sequencing 69221523 PD3904a 5 154927738 154927738 AATGTCCAGAATGGTATCTCCTTGG T - TTTCTTCTAGGATTCTTAGAGTTTG deletion Somatic Capillary sequencing 69141354 PD3904a 2 197132627 197132637 GTGGTGTGCCACAGATGAGAAAGGA CATATGCCAAG - CTATGTTGGTACTGGGAGTCCTTGC deletion homo_sapiens_core_58_37c HECW2 ENSG00000138411 CCDS33354.1 ENST00000260983 Somatic Capillary sequencing 69562845 PD3904a 1 192193802 192193808 TAACAAAACCACTCTGGTTAGTGGA CAAGAGT - CAAGTCAAAGTTCCTAAAGCTCCAG deletion Somatic Capillary sequencing 69227096 PD3904a 5 51876255 51876256 GAAGAACAGAAAAAGGAGACAAAAA - A GGCATTGTGATATTTAGTTCTTTGA insertion Somatic Capillary sequencing 69201618 PD3904a 8 42327136 42327136 TGCCTCTAAAGTTTATCCATCAAAA G - GAAAAACTTCAGTTAAGACTTAACT deletion homo_sapiens_core_58_37c SLC20A2 ENSG00000168575 CCDS6132.1 ENST00000342228 Somatic Capillary sequencing 69071162 PD3904a 7 153200588 153200589 GACACTTGACAAGTCTGGCTCCTGA - A AAAAACACCGGCCACTAACAGTGCA insertion Somatic Capillary sequencing 69558988 PD3904a 1 167716463 167716489 TTTAAAAACATTTTCTAATTTCATT CCCTTTTATTTTTGAGACAGGGCCTCA - CTCTGTCGTCTAGGCCGGAGTGCAG deletion homo_sapiens_core_58_37c MPZL1 ENSG00000197965 CCDS1264.1 ENST00000359523 Somatic Capillary sequencing 69772095 PD3904a 13 58332484 58332501 TATGTACTTGTATCCCATGCTGATG GTTCACTAGTTGTAACAT - GTACACTAATTTCATCTTCACAGCT deletion Somatic Capillary sequencing 69704965 PD3904a 7 45885112 45885121 AGACTTATCTTTTCCAGGAGCAAAC TGCAAGGACT - TGTGTGAGATGTCCTTGCCCAGGAA deletion Somatic Capillary sequencing 69244844 PD3904a 2 26281563 26281565 CACTCCTGCCTCAGGACCTGTGCGC TTG - TTGTTCTCTGGCTGTAGCCACTCTG deletion homo_sapiens_core_58_37c RAB10 ENSG00000084733 CCDS1720.1 ENST00000264710 Somatic Capillary sequencing 69274160 PD3904a 8 82794359 82794399 GCAGAAAAAAATCTGGCTCATAAAT TCAAATTTAAGAAGAAGAGTGAAGGAAATAAAGTCCAAAAA - TCAAATTCTCTTGCCCTTGTGTTGT deletion Somatic Capillary sequencing 69775240 PD3904a 13 77308308 77308326 TTTCCTCAGATCATTTAAATTGGCA TAGTATTTATTATACGTGT - TAGCTATCCTGGAATTCAAACCAAG deletion Somatic Capillary sequencing 69570479 PD3904a 1 235679402 235679408 CTAATTTGTTCATTAGCTGGTTGAC TTCTTGG - TTCTTGCATATTTCAATGGCTAAAG deletion Somatic Capillary sequencing 69845623 PD3904a 9 8425184 8425184 GTCATCCCTATGATGCTGGGTTACA T - CAGGCTCTAGGCAGCCTTGTTCCAA deletion homo_sapiens_core_58_37c PTPRD ENSG00000153707 CCDS43786.1 ENST00000381196 Somatic Capillary sequencing 69726928 PD3904a 3 168379727 168379737 CTGTTCTCAGAGAGGCTTAAAGAGC CTGACTATAAT - CTGATGGTATTCATAGAGCTTAAGA deletion Somatic Capillary sequencing 69675217 PD3904a 12 78215934 78215969 CCTCTGAATTTGATAAATTTTATTT GCTCAACTAACTCTATCAGTAGCATGTTGTAAAGAA - GCCTGTAGGGTAGTAAATGCATGTC deletion Somatic Capillary sequencing 69046463 PD3904a 7 81144524 81144535 TTTCATCACTAAGTACTTACTGTAG TTGTAGTTGTTT - TTGTGGAAGAAGTTGGCTGTGTTGT deletion Somatic Capillary sequencing 69137846 PD3904a 2 174139753 174139754 AATTAGTAGATGAGTAAATGCTTCT AA - AAGCAAGACATGAAGGCAATTACAT deletion Somatic Capillary sequencing 69812860 PD3904a X 112852237 112852237 CTGCATCTTCACATAGTGGAAAGCA G - GAAGGTAAGAGGGACAAACTCCCTC deletion Somatic Capillary sequencing 69323447 PD3904a 3 60661453 60661454 CTCAGCCTACCAACAGCATGTTTTT - T ATGACACTGGCTTGCAAATGCATCT insertion homo_sapiens_core_58_37c FHIT ENSG00000189283 CCDS2894.1 ENST00000468189 Somatic Capillary sequencing 69244284 PD3904a 2 23497218 23497245 AAATCTAGGTTGGGTGATGGGTCTT TGAAAGTGCTATGGTCTCAATGTTTCTG - TTCTCCAAAAAGTCTTATGTTGAAT deletion Somatic Capillary sequencing 69630708 PD3904a 1 111251852 111251877 AAGCAGGAAGTCTAATTAGGAGAGT ATTGAAATAATGGAGGTGAGAGGTGA - AGGAGGCTCCTACCGGGGTGATAGC deletion Somatic Capillary sequencing 69563244 PD3904a 1 194624426 194624436 GGTTAGGAAAAAGAAATTCCTCTTC ATTGATGTAAA - ATAATGGATAAAACATATATTATAT deletion Somatic Capillary sequencing 69565613 PD3904a 1 207681518 207681518 GGATGAATCGGAAGAGCACAGAGGA T - TTTGAGGGTAGTGAAACTACTCTGT deletion homo_sapiens_core_58_37c CR1 ENSG00000203710 CCDS44308.1 ENST00000367049 Somatic Capillary sequencing 69505620 PD3904a 9 72085592 72085616 CAGTGGAACACAATGACTGTTTACG CACAGGATCCAAAGTCCAGACACAC - CCTCAGAGAGATGTCTGGGCGTTCT deletion homo_sapiens_core_58_37c APBA1 ENSG00000107282 CCDS6630.1 ENST00000265381 Somatic Capillary sequencing 69368908 PD3904a 14 49192596 49192600 TCTTAACGTATTTTAAAGTATGTTA ACAAT - ACAATTAGTGCACTAACAATACATA deletion Somatic Capillary sequencing 69682001 PD3904a 12 119866313 119866321 ATCTGTCTCCAAAACCCTTACCATG TCCACTGTA - TCACACAGCAGCCCCCTCTTTGGTG deletion homo_sapiens_core_58_37c CCDC60 ENSG00000183273 CCDS9190.1 ENST00000327554 Somatic Capillary sequencing 69812014 PD3904a X 104645390 104645394 GCAACTACTTCACTAAGTTAACTTG TCTTT - TCACTGCACTTATCAATCTGCATTT deletion homo_sapiens_core_58_37c IL1RAPL2 ENSG00000189108 CCDS14517.1 ENST00000372582 Somatic Capillary sequencing 69853485 PD3904a 9 14818300 14818301 GCTGAAATCTCAAAAAACATTTTTT - T ACAAGGATAGGAGTGCGAGTGCAAA insertion homo_sapiens_core_58_37c FREM1 ENSG00000164946 CCDS47952.1 ENST00000452036 Somatic Capillary sequencing 69409951 PD3904a 22 40371653 40371653 CTGCCTCCCAAGTTCAAGTGAACTT G - GAGCTGTAAGCTCCACGGAGCAGGG deletion Somatic Capillary sequencing 69795001 PD3904a 12 717542 717553 TGTTACCCTTGAATAATAGCGAACA CTTAATAATGTG - CTTATTACCGGCCTGGCACTTTTCT deletion homo_sapiens_core_58_37c NINJ2 ENSG00000171840 CCDS8505.1 ENST00000305108 Somatic Capillary sequencing 69482924 PD3904a 10 72113542 72113542 CTCCTAACCACCATGCTACACTGCC T - CCCTAGAATATGTAACCCGCATTCA deletion homo_sapiens_core_58_37c LRRC20 ENSG00000172731 CCDS7302.1 ENST00000355790 Somatic Capillary sequencing 69135508 PD3904a 2 159529725 159529726 CATTAGAACGCACATTAGTCTACTT AG - AGGTATGAATGATAAGGCAATGGAG deletion homo_sapiens_core_58_37c PKP4 ENSG00000144283 CCDS33306.1 ENST00000389757 Somatic Capillary sequencing 69755280 PD3904a 17 73045079 73045082 TAAGTAAACGCCTAAATGAGTATGA CTGT - CTGTAACACCCTACCTAAGATGATC deletion homo_sapiens_core_58_37c KCTD2 ENSG00000180901 CCDS32728.1 ENST00000322444 Somatic Capillary sequencing 69560977 PD3904a 1 180162214 180162216 GGTAATGGCCTTGTTGGATTCGGCT GAA - GAGAGACCAGGAGGCAAGATTCTGG deletion homo_sapiens_core_58_37c QSOX1 ENSG00000116260 CCDS1337.1 ENST00000367602 Somatic Capillary sequencing 69746669 PD3904a 17 35582583 35582583 CAAACAAACAAACAGTGACACGGTA G - GATCTGAATACCCTCAGCAGGTCAC deletion homo_sapiens_core_58_37c ACACA ENSG00000132142 CCDS42303.1 ENST00000427330 Somatic Capillary sequencing 69253663 PD3904a 2 79091645 79091657 AACATGTGCCAAGCAATGTACTAAG TGCTTACACACAT - TGCCTCACTCAGGCTTCACCAAAAC deletion Somatic Capillary sequencing 69747518 PD3904a 17 39327197 39327202 GACCACACACACAAGTTACGCCAAG TCTATC - TAAACTGTCCTTCTTTTATTATATA deletion Somatic Capillary sequencing 69492159 PD3904a 10 131727948 131727978 TCAGACGTGGAGCCCCATGCTTTGT CCACGAGAGAGGGCCACAGAGCACCATGGTG - CCATCAAGGTGGCATCCTCAAAATG deletion homo_sapiens_core_58_37c EBF3 ENSG00000108001 CCDS31314.1 ENST00000368648 Somatic Capillary sequencing 69460192 PD3904a X 12482378 12482382 GGGGAGACCTCATAGCCAGGCCTCT TGATG - TGAGACTGCCAGTGGACCTAGAACT deletion homo_sapiens_core_58_37c FRMPD4 ENSG00000169933 CCDS35201.1 ENST00000380682 Somatic Capillary sequencing 69438749 PD3904a 19 53155818 53155828 CTGCAATCATGACATTTGTAACGTT TCTTTCCAGTA - TGAGTTCACTGATGAACTGCAAGCT deletion Somatic Capillary sequencing 69588573 PD3904a 16 5886799 5886799 ACTACAAATGTCTCCTGACATTGCC A - AAAGTTGCCTGAAGGGGAGAAGCAC deletion Somatic Capillary sequencing 69766905 PD3904a 13 23584061 23584086 AGAGGGACTGCGCAATGATTCCTAT GGAAACATTATTGATTGGTCCCCTGA - GGGGATGTTTAGCTTAAATTGCACC deletion Somatic Capillary sequencing 69720267 PD3904a 3 124814547 124814553 ATCTGAATGTGGTAACTCAGTCTTG ATTCTTC - ACATGACTAGGTCCGAGGGCATAGT deletion homo_sapiens_core_58_37c SLC12A8 ENSG00000221955 CCDS43143.1 ENST00000393469 Somatic Capillary sequencing 69136144 PD3904a 2 163704668 163704668 TTCCCTTCCACACCACCCAAGCAGA G - GTTCTCCATGAGGGTTACACCACTG deletion Somatic Capillary sequencing 69214737 PD3904a 5 106121570 106121570 ATGTGTAACATCAGTACTGAACAAA T - GTGAAACACCCTCTGAGGAGTCTCA deletion Somatic Capillary sequencing 69515905 PD3904a 9 134376827 134376832 ATAGACCAGGAGATCAAGAAGGAGC GAGGCT - GAGAAGAGTGATCCATCAGCCTGGT deletion Somatic Capillary sequencing 69861317 PD3904a 5 26004627 26004631 ACACAAATCCTTCCCATTCCCCCCT TTATA - TTAGCAATACCTATCATTTGTAACA deletion Somatic Capillary sequencing 69815848 PD3904a X 136596083 136596083 AAAATGGCAAGATAAGTGTTCCAAT G - GGGGGATATAAATGTACTTTGGAGG deletion Somatic Capillary sequencing 69284422 PD3904a 8 134753498 134753518 AAAAGAAGTGTTGCTTGATTGGGAA GTCACCTTTCTTTTTCTCCAG - GTAACCGCAACGTAATCGAACACAT deletion Somatic Capillary sequencing 69827258 PD3904a 18 24190054 24190070 TTATCTCATGATGTTATGAGAATAA ATCTAAGATGTGGGTAC - ATCTATGGTGTCTGTCCCTATCTAT deletion homo_sapiens_core_58_37c KCTD1 ENSG00000134504 CCDS11888.1 ENST00000317932 Somatic Capillary sequencing 69368680 PD3904a 14 47961290 47961294 CATTTATTCTCTTTGAACCATGTAA CACAA - ATATAAATTCTTCTTTTCTTTCAAA deletion homo_sapiens_core_58_37c MDGA2 ENSG00000139915 CCDS45098.1 ENST00000399232 Somatic Capillary sequencing 69812537 PD3904a X 110362780 110362780 ATAATGGTGCTTATGTACAATTCTT G - AAATAGAGCCTACAGCCGCCCAAAA deletion homo_sapiens_core_58_37c PAK3 ENSG00000077264 CCDS48153.1 ENST00000372010 Somatic Capillary sequencing 69567682 PD3904a 1 219868868 219868875 GAATTAAAAATGAAAATTCAGGCTG GGCAATGT - GGCCCATGCCTATGATCCCAATGCT deletion Somatic Capillary sequencing 69177647 PD3904a 15 70275412 70275439 TCATATCATCCCCACTCCACCGTTG CAGTCAAGGCAAGACACTGGTTCCATTT - CAAATACCACTCAGCTCCACTTGGG deletion Somatic Capillary sequencing 69159633 PD3904a 2 179778611 179778612 TGCCTGGAAATGGAAGGCATAGGAC - A GATACATTATGACCAATCAGTCATG insertion homo_sapiens_core_58_37c CCDC141 ENSG00000163492 ENST00000409284 Somatic Capillary sequencing 69449163 PD3904a 10 21164089 21164108 ATTCACTTTCACCCTGAGCTCATAT TTTTATCTTATTTTATTGTC - TTTTAATCTCAGCTTGTTCTCTCCT deletion homo_sapiens_core_58_37c NEBL ENSG00000078114 CCDS7134.1 ENST00000377122 Somatic Capillary sequencing 69127114 PD3904a 2 106247573 106247592 AATGCTGAAGTAGGGCACTTACAAT ACAGTCAGTCCTCATTATTC - ACGAGTTCCGTATTTGTGAGTTTGC deletion Somatic Capillary sequencing 69627730 PD3904a 1 92379274 92379289 AATGAATGTCAGTGCAGCTGGATCT CAGAGAGCCAAGTCCC - CATGGGCATTGGGACGGGAGAGGGA deletion Somatic Capillary sequencing 69826887 PD3904a 18 22126632 22126637 CCAGAAAGACAATTGCCCCAAGCAC ATTCAT - ATTTCCAGCTGACTATACTTTTTCC deletion Somatic Capillary sequencing 69072454 PD3904a 4 54847809 54847819 TCCTTGGTGATCCATGCCTTTTTGT TGGCATAATAA - TGGACTAGTTAAGAAATTCACTCCT deletion homo_sapiens_core_58_37c AC110792.1 ENSG00000250443 ENST00000511394 Somatic Capillary sequencing 69861665 PD3904a 5 28411493 28411522 TTAAGGGGTAGGTTGTTCTGATGAC CTTGGGATGGAATCCTTCATTAAAGAACTG - CTTGGACCCCCCTCAGAATTGGAGG deletion Somatic Capillary sequencing 69132372 PD3904a 2 139321049 139321065 CCTGGGCAACAGAGCAAGACCCTGT CTCAAAAATGAAAGATA - CTCAACATCATTAGGTCGTTAGGGA deletion homo_sapiens_core_58_37c SPOPL ENSG00000144228 CCDS33298.1 ENST00000280098 Somatic Capillary sequencing 69024119 PD3904a 6 4335804 4335819 GGCACAGGCTAGAGATGCATACCAG AAAGTCATCAGTGAAC - AAATGGCGTTAGAGCCATGAGGCTG deletion Somatic Capillary sequencing 69542568 PD3904a 6 159012443 159012445 TCTCGGGAGCCACGTCACTAGTGGT CTC G TTCCTTTCAGCCCTTTGCCTCAGCC complex Somatic Capillary sequencing 69831120 PD3904a 18 48759272 48759272 AGCAATCAACCAACTTCACTATATT C - CTTGGTTCTCCACAAATGTTCAAAG deletion Somatic Capillary sequencing 69833111 PD3904a 18 59606589 59606589 AACAAGTGAGACACATTCAATTCCT G - GGCCTAGAAATTTAGGATGGTGGAG deletion Somatic Capillary sequencing 69593043 PD3904a 16 28049094 28049099 ATGGAGTCTCTCACATGTTGCTGGA CTCACC - CATTAGATCCTGTTTGTTCCCTCTT deletion homo_sapiens_core_58_37c GSG1L ENSG00000169181 CCDS10631.1 ENST00000304678 Somatic Capillary sequencing 69836659 PD3904a 18 59606924 59606966 GGAGGCTTTAAAAATGCTTTAGTAT GAAGCATTTATTTCTCACACAAATTGGAGATTTATTTCCCACT TTATTTCTCACAC ACCTCCCCCTTCCACCAAAAAAAAA complex Somatic Capillary sequencing 69175816 PD3904a 15 62804772 62804774 ATTTAGATGGTAATTGCTGAGAGAC ATG - ATGTGCTCTTTCCGAGTGTACATTT deletion Somatic Capillary sequencing 69241392 PD3904a 2 7262955 7262968 TTCCCTTAGTTCACTGCATCCAGAC AGAAGCTGGTTTAA - AGAATAGGATCCATGTTAATCTATG deletion homo_sapiens_core_58_37c ENSG00000234603 ENSG00000234603 ENST00000441133 Somatic Capillary sequencing 69816183 PD3904a X 139329159 139329204 GATAAAGGTCTAATTGTGAGACTTG TCTAACCCTCAGTTTCCTCACTTGTTTGATGGGGATGATAATAATA - TCTACCCCTCAGGATTTTGTAAAGA deletion Somatic Capillary sequencing 69329562 PD3904a 11 70766649 70766653 ATTACAAACCAAAATTAAAATTTAA AAAGC - AAGTCATTAAAAATCAAAAATAAAA deletion homo_sapiens_core_58_37c SHANK2 ENSG00000162105 ENST00000338508 Somatic Capillary sequencing 69860176 PD3904a 5 19115392 19115427 TCCTCCTGACTGCGTGAGACCTTCA ACTAGGGTCTCCAGCCAGCTCCTACAGGTGCATTTG - GGAAAGCAACAGTTCTGTACCTCCC deletion Somatic Capillary sequencing 69730450 PD3904a 3 189696795 189696808 GGATCATCTAAGAAAGTACTCCCTT GTACTCACTGTCTG - GCTCATGGCAAGAAGAATCACTTTA deletion homo_sapiens_core_58_37c LEPREL1 ENSG00000090530 CCDS3294.1 ENST00000319332 Somatic Capillary sequencing 69781367 PD3904a 13 111865382 111865394 TCCTTTGGCAAGCATTTCTCCTTCT GTAAAGGAAATTA - TAGGTGCTCTTAGAGAGCGGAGGAG deletion homo_sapiens_core_58_37c ARHGEF7 ENSG00000102606 CCDS45068.1 ENST00000375741 Somatic Capillary sequencing 69275519 PD3904a 8 90528653 90528664 CCTTCACAGCTCTTCCTAGCTTCAG CACCACTCATAT - CAAGTCCATTACTAACTTATCTATG deletion Somatic Capillary sequencing 69366469 PD3904a 14 34567447 34567447 ATTTACAGGCAGCTACTGTGTGTCA G - CCACTGTGCCAGCCCTGGAAATACA deletion homo_sapiens_core_58_37c EGLN3 ENSG00000129521 ENST00000487915 Somatic Capillary sequencing 69377270 PD3904a 14 105538744 105538744 TCATCACGTGCTGGTTGCACGGGTG T - TTAGGTAGGAACTCTCTGTGGAGCT deletion Somatic Capillary sequencing 69434375 PD3904a 19 32091229 32091242 TGTGCTTAACTTTTTGTGTAACTGG CCAACATGACATGT - CTAACTATACAAATGGAAATTTTAT deletion homo_sapiens_core_58_37c ENSG00000232700 ENSG00000232700 ENST00000441786 Somatic Capillary sequencing 69355677 PD3904a 11 42315252 42315262 CACTGGAGCCTGCCAAAGTGGGGAT GGTGAGGGGAG - GGAGAGCATCAGGAAGAATAGCTAA deletion Somatic Capillary sequencing 69815062 PD3904a X 130066129 130066142 GAGGCCCTGAGCTTTATTTATTTAC ATTTGAAGTCTAAG - ATTTGGCACTGAGATTTTTATTGGT deletion Somatic Capillary sequencing 69447795 PD3904a 10 14141553 14141553 TGCAGAACTCCTATACGAAAGTTGG C - CCTGTTTATATGTAGGTTTCACAAC deletion homo_sapiens_core_58_37c FRMD4A ENSG00000151474 CCDS7101.1 ENST00000357447 Somatic Capillary sequencing 69532233 PD3904a 6 100235452 100235452 TTTTCTAGCATAAGAGCAAGGCCAA G - AATGGGATATGAGTCAAACTGATGA deletion Somatic Capillary sequencing 69118521 PD3904a 21 40276697 40276697 CAGAAGTTAATTGACTTAATGAGTG G - AACTCCTTCAATCCATTGAAGGCCT deletion Somatic Capillary sequencing 69810716 PD3904a X 93796500 93796524 ATTGGACCCTTATCTCAAACTGCAT ACAAAAGTCAACTCATAATTTATTA - ACAACTTACGCATAAGATCTGAAAC deletion Somatic Capillary sequencing 69268478 PD3904a 8 52700772 52700773 TGTCTGGGACTAAACCTGCAATATC TT - TGTAATGACTGTATGTAAATTAGCT deletion homo_sapiens_core_58_37c PXDNL ENSG00000147485 CCDS47855.1 ENST00000356297 Somatic Capillary sequencing 69627432 PD3904a 1 90572078 90572084 CCTTCCTGACGTTGGTCTCCCAACA CTAGTAG - CCAGTTTTTTTATTCTTTAAGTGCT deletion Somatic Capillary sequencing 69798724 PD3904a 12 20134245 20134252 TTGTTGTGACGTGTTATATTCAGTG TTCAAGTA - TCCGTGGGTTGAACGATACTTCTCT deletion Somatic Capillary sequencing 69208543 PD3904a 5 55911692 55911714 AACACCACTTCATAAATCACAGGTA CCTTGGACTTAGAATGCACAAGC - CCTGTTTCCATGGCCTCGATTTCAG deletion Somatic Capillary sequencing 69409300 PD3904a 22 36870608 36870638 CTGGAGGAGGAAGGAGGGAGGGGTG AAGGCTCACTCCGGCCAGGTTAAGATATTTC - AAGAAAATCAGATATCGAGATTTTC deletion homo_sapiens_core_58_37c TXN2 ENSG00000100348 CCDS13928.1 ENST00000216185 Somatic Capillary sequencing 69513527 PD3904a 9 120361746 120361780 CCAAAAGTTATCCCCTTGGCTAAGT CTCCCTATTGTGGGAAAAATGAGAATACAAAAACC - CTCAATGATTTTGACACGAGGGTCA deletion Somatic Capillary sequencing 69713613 PD3904a 7 46120374 46120375 TCCAGAGCTGTTTCCACGCTGAATC - T TTTTTTTTCCTAAGAGACAAACATC insertion Somatic Capillary sequencing 69605602 PD3904a 16 79931211 79931213 ATCAGTCTGAGCAGAGAAAGGAGAG GAT - GAGTTTGAAGTAAGCAGCTGCCTAT deletion Somatic Capillary sequencing 69830721 PD3904a 18 46383335 46383357 GATTGAGAGAATGAGCCAGGCAAGT CGGGGGAAGCATGGACTGTAGCA - CGGCAGGACTGAGCGCTGAGCAGCC deletion homo_sapiens_core_58_37c KIAA0427 ENSG00000134030 CCDS45864.1 ENST00000382998 Somatic Capillary sequencing 69286917 PD3904a 8 77916474 77916486 AATTTTTACTTTAATACACTACAGT GCTATCTCCTTTC ATTAAA TCAGACTCTGATTTCTCCTCACTCT complex Somatic Capillary sequencing 69728644 PD3904a 3 178745456 178745456 TACGAGAATGAGTTACTCTGAGCTT C - CGCCAGCCGCAGCCTCTTGGCATGA deletion homo_sapiens_core_58_37c ZMAT3 ENSG00000172667 CCDS3224.1 ENST00000311417 c.535delG p.E179fs*27 Somatic Capillary sequencing 69512411 PD3904a 9 114196601 114196601 CAAGTACACAAAGATATAAACTAAA C - AAAAAATGTGTAAAGAAAACTGAAA deletion homo_sapiens_core_58_37c KIAA0368 ENSG00000136813 CCDS48006.1 ENST00000259335 Somatic Capillary sequencing 69463351 PD3904a X 38113255 38113257 CTCAAGAATGCAAAATTTACATCAT GGG - GGAATTTTAGAGAATAAGTAACATA deletion homo_sapiens_core_58_37c ENSG00000250349 ENSG00000250349 ENST00000465127 Somatic Capillary sequencing 69861480 PD3904a 5 27317379 27317393 TTTTAAAATCATTGTAATAATCACA CTCTTAGAATTCCAC - CTATGGATGGCTTGATGGCAATTAG deletion Somatic Capillary sequencing 69461059 PD3904a X 19107991 19108005 GCCCTGCCAAGACTGTGGACTCAAA AAATGTGAACTAATT - AAATGGTTGTTGCTTTAAGCTGCTA deletion homo_sapiens_core_58_37c GPR64 ENSG00000173698 CCDS43923.1 ENST00000379869 Somatic Capillary sequencing 69555230 PD3904a 1 145513595 145513612 CTCTCCACTGCACTCAGAATAAAGT ACAATTTTATTATTTGTG - ATCTGGCTTGCTCTTCCCCTCTCAG deletion homo_sapiens_core_58_37c GNRHR2 ENSG00000211451 ENST00000312753 Somatic Capillary sequencing 69628635 PD3904a 1 97591428 97591428 TGGTTTATAAGCCTGATTTATAATA T - TTTGACATAGCAGTCTAAACTACTA deletion homo_sapiens_core_58_37c DPYD ENSG00000188641 CCDS30777.1 ENST00000370192 Somatic Capillary sequencing 69499823 PD3904a 10 96846293 96846294 AAGCAACCCTGTGGCCTCCACCACT - A GACTGCACTGGTTCAAACCTGAAGC insertion Somatic Capillary sequencing 69828344 PD3904a 18 30598726 30598767 AGGAGGGAATGTGTCTCCACTGCTA TTAAGTATGGAACTTCTTTTTGGGGTGATGACATTTTCAAAG - TTAGTGGTGATGGTTGTACAAATCT deletion homo_sapiens_core_58_37c C18orf34 ENSG00000166960 CCDS42424.1 ENST00000383096 Somatic Capillary sequencing 69565718 PD3904a 1 208496463 208496474 CCTGGCCCCCTGACAAACTACTCTG CCCAGAGCTCTT - CTTGGTGGGTCCTAGCATCCTTTGG deletion Somatic Capillary sequencing 69651131 PD3904a 20 49713185 49713226 GATCCCTTAGAAGGATCCCTGGCGT GGCACCAGCACTCTATAATATCAGCCATCATCGTAAAGCCAG - GGCCTCCTACAGAGCACACTTTACC deletion Somatic Capillary sequencing 69724624 PD3904a 3 152503571 152503573 CTAATGCATCACTTTATTCATTGTC ACT - TGGTTACTGCAGACTATGGGCTTCA deletion Somatic Capillary sequencing 69771495 PD3904a 13 53836261 53836265 TATTAGTTGTCATTAGCTTCTAATT CCAGA - CCATTGATCTATCATAAGGGCAAAA deletion Somatic Capillary sequencing 69173770 PD3904a 15 53631121 53631161 ATTACACAATTTCCATGCTGCGGAT AATTTGCATTGTCTTCTGTATTACACGTCTTGTTGACATAG - AACTATGGGTTCCCTGAGCACATCA deletion Somatic Capillary sequencing 69807288 PD3904a X 65556185 65556196 GTACAATGTTGGATATGGGTCTGTC ATAGTTGGCTCT - TATTATTTTGACATATGTTCCCTAG deletion Somatic Capillary sequencing 69836007 PD3904a 18 75983733 75983741 TCGCACGGATTCTCTCCTGTTTCAT TGATAAAAA - TGAGAAATGCAGCACTCTTGGCACC deletion Somatic Capillary sequencing 69093126 PD3904a 4 182993320 182993339 ATCCTTACTGCTTAACTGCCTTGTG GGATACTTTTCAACTATCAA - GGACTATCTGGAGTATTTTTTCACT deletion Somatic Capillary sequencing 69775512 PD3904a 13 78961145 78961153 TATTTTAAGAAGTGATAGAATAATA CAGTTCTCC - CATTCTTGCAAAATAAACTTTTATT deletion Somatic Capillary sequencing 69564995 PD3904a 1 204201297 204201336 TGTCGAGTGGAAACAGAACTTGAAG GCTGTGATGAACTTAGATATTTAGCTGAGGAGATTTCCAA - GCAAAGTGTTGAAGGTGTGGCCTGG deletion homo_sapiens_core_58_37c PLEKHA6 ENSG00000143850 CCDS1444.1 ENST00000272203 Somatic Capillary sequencing 69815224 PD3904a X 131743786 131743802 AGCCAACTAAAAAAAATCTACCTTT TCAGAAAGGATAGAGAG - TCAACATAGAGATGAAAGATTGAAT deletion Somatic Capillary sequencing 69246268 PD3904a 2 34146847 34146847 TTTCTTTCCTTTCTGGCTTCTCAAA G - CTTTGTGTGTGCTTAAAAGTGGCTC deletion Somatic Capillary sequencing 69865550 PD3904a 5 4350740 4350741 GGGATCCCTGTCTGTTTTATTCACT - T TTTTTCCTAGAACTCGGAAGTAAGT insertion Somatic Capillary sequencing 69484895 PD3904a 10 83869581 83869581 GTACTAGTATCCCCATGCAGCAGGT G - CAGAACTAAAGAACACAGTTTCACA deletion homo_sapiens_core_58_37c NRG3 ENSG00000185737 CCDS31233.1 ENST00000372141 Somatic Capillary sequencing 69082470 PD3904a 4 118389410 118389435 TAAGGTAATGGAACCAGTAGGGATC ATCAATTACACTTCCCAGCGCAGAAA - ATCTGAGCAGAACATTTTCATGTCC deletion Somatic Capillary sequencing 69223314 PD3904a 5 165709685 165709701 AGCGGTAGGATTCACAGTTGGAAAG CTCTTCTTTTTATGATC - CCCAAACACTGTTTCACCTTATTTT deletion Somatic Capillary sequencing 69680976 PD3904a 12 114570043 114570043 GAAAAGCAGAAGCAGTGGCCCTTTC A - AACCAGAAAATGCACTGGGAAGGCC deletion Somatic Capillary sequencing 69126498 PD3904a 2 101881095 101881105 GCGAATAGATTGTTCTCTGGCATCA TGCTGGCATAG - TGTTCTTTCATTGTCTTGTTTGCAT deletion homo_sapiens_core_58_37c C2orf29 ENSG00000158435 CCDS2050.1 ENST00000289382 Somatic Capillary sequencing 69622207 PD3904a 1 57823000 57823000 CCTGGTTATATGATCTGATGCATAA C - CTTTAACTGTAGAACCTCAATTTCT deletion homo_sapiens_core_58_37c DAB1 ENSG00000173406 CCDS607.1 ENST00000371236 Somatic Capillary sequencing 69372975 PD3904a 14 74980043 74980051 GAGGGCCAACGAACTGTGAGTGCGT ATGATACGG - ATAATTTATGGACCAAACCATTTAA deletion homo_sapiens_core_58_37c LTBP2 ENSG00000119681 CCDS9831.1 ENST00000261978 Somatic Capillary sequencing 69817874 PD3904a X 152064224 152064232 TATTTGAGCACTTGGTCTATCTGGG TACATGTCA - TTTGGGCATGTCTGGTGCTTGAAGA deletion Somatic Capillary sequencing 69420520 PD3904a 4 19100246 19100270 CCTGCTGATATTGTAGGGTTATTGT GAGAATTAAAAATAAAATGGGAACA - GCTTTTGCTGTAAAGTAGACCGTGG deletion Somatic Capillary sequencing 69129226 PD3904a 2 119765024 119765030 AATACATTTTTGCTTGCACCACGCT AGATTCA - AGAGGCATTCAGAAAACATGCATTG deletion Somatic Capillary sequencing 69777874 PD3904a 13 92182080 92182080 TGGAACAAGGTCATTGTCACCTCAC T - TTTTTTTGTTTTCTACTATGACCTC deletion homo_sapiens_core_58_37c GPC5 ENSG00000179399 CCDS9468.1 ENST00000377067 Somatic Capillary sequencing 69732470 PD3904a 3 159917114 159917124 GCAGAGGTGTTCTAAATAATGGATA GCAAAGCAAAG AATAATGGAT CCCTTGCAGGGATCAATTCAGACCA complex Somatic Capillary sequencing 69855713 PD3904a 9 33198115 33198116 TGCAATTCATTGTTGGGCATGCTGA - A CTAAGGTGCATACAGGGAAATATAG insertion Somatic Capillary sequencing 69704783 PD3904a 7 44838823 44838839 AAGCAACAAAATAAGCAGATGTTAA TTAACTGTAATTTTCTC - TTACAGCTGTTTGCAGACAAGGTCC deletion homo_sapiens_core_58_37c PPIA ENSG00000196262 CCDS5494.1 ENST00000468812 c.70-23_70-7del17 p.? Somatic Capillary sequencing 69510444 PD3904a 9 101409316 101409334 GCAGTACCAGGCACAATGAGAAGAG GCAGGGAGGATATCTGTTT - GCAATATAAGAAAAAATAAATACCC deletion homo_sapiens_core_58_37c GABBR2 ENSG00000136928 CCDS6736.1 ENST00000259455 Somatic Capillary sequencing 69515459 PD3904a 9 132441188 132441198 GCTGGGCTGCCCCAGTCTCCAAAGG AGCTGACCACA - AGCCCCTAACTGGCTGCCCCTGGCC deletion homo_sapiens_core_58_37c PRRX2 ENSG00000167157 CCDS6926.1 ENST00000372469 Somatic Capillary sequencing 69412104 PD3904a 22 51117692 51117693 CCTGGCTCTGTCTGTAGGGGTGGGG GC - CCTAGCCTCTGCCCAGGGACCCTAC deletion homo_sapiens_core_58_37c ENSG00000251322 ENSG00000251322 ENST00000503869 Somatic Capillary sequencing 69489232 PD3904a 10 112597469 112597478 CTGAGGCACACAAAGGGAACAAATG AAGAACATAA - AATGATCAGTGTAAACCTGAAAGCA deletion homo_sapiens_core_58_37c RBM20 ENSG00000203867 CCDS44477.1 ENST00000369519 c.? p.? Somatic Capillary sequencing 69460904 PD3904a X 17783161 17783182 CCTCCCACTTCCTCAATGTCCTTGG GCACTAAAACTCCCCTGGAGGA - GCAGGGGTGGGGAGGAATAGAAAGC deletion Somatic Capillary sequencing 69291116 PD3904a 8 75720463 75720464 TATGCAACTTCCCCAGTTACTCCTG - A AAAAACACCCACTATTGTAGATTGG insertion Somatic Capillary sequencing 69198281 PD3904a 8 24128950 24128961 GTGGGGCTTAGCATTTTATGTTTAG CTTTCAAAACAC - CTTAAAGTTTCTGAGAATTTGTCAT deletion Somatic Capillary sequencing 69659183 PD3904a 19 2239758 2239765 CTAGGTTCTTGCTTTTCCTCCTGTT TTTTTAAC - TTTTGACTTTCCTTTATGAAAGATT deletion homo_sapiens_core_58_37c SF3A2 ENSG00000104897 CCDS12084.1 ENST00000221494 Somatic Capillary sequencing 69553191 PD3904a 6 164448580 164448581 GAATCAAGTGTTAATTGGATGGCAG - C GTCTTTGAATGGATAATCTTTCTCT insertion Somatic Capillary sequencing 69221522 PD3904a 5 154927464 154927464 TCTTCTTTTGAAAAATGTCCATGTC T - TTTGCCCACTTTTTAATGTGGTTGT deletion Somatic Capillary sequencing 69052002 PD3904a 7 117460646 117460647 AAGGGTTGATGTTCAATTTTTCCAC AT - ATAGATTCAATTTTTCAATCATCTG deletion homo_sapiens_core_58_37c CTTNBP2 ENSG00000077063 CCDS5774.1 ENST00000160373 Somatic Capillary sequencing 69399733 PD3904a 20 16024594 16024596 TCAACCCAAAAATCTGGTCTGAAGT GAC - GACTCAGTTTCAGTTGAGGGAAGAG deletion homo_sapiens_core_58_37c MACROD2 ENSG00000172264 CCDS13120.2 ENST00000217246 Somatic Capillary sequencing 69276265 PD3904a 8 94859241 94859243 GCTTTCGCAGGAGGGACAGAGCATT ATG - ATGATGTTGATTAGACAACTTTTAA deletion Somatic Capillary sequencing 69221315 PD3904a 5 153712754 153712761 CTGCTAAAAGAAGTATATGAAAACC ACTGTGTA - ACTCAACCTGCTCATTTTACAGATG deletion homo_sapiens_core_58_37c GALNT10 ENSG00000164574 CCDS4325.1 ENST00000297107 Somatic Capillary sequencing 69631861 PD3904a 1 118168911 118168911 GTCCTTGGGGTTCTTTCTGCTTATG T - TTTTTCCCCCCCATCTGGTAATAGT deletion homo_sapiens_core_58_37c FAM46C ENSG00000183508 CCDS896.1 ENST00000369448 c.? p.? Somatic Capillary sequencing 69863084 PD3904a 5 35682779 35682779 AAGTATTATTGGTGTAACTCTATTA T - TTGTTTGTTGAATTTTGTGCTAGGT deletion homo_sapiens_core_58_37c SPEF2 ENSG00000152582 CCDS43309.1 ENST00000356031 Somatic Capillary sequencing 69559474 PD3904a 1 170625614 170625614 TTCTCAAATTCTCAGAGTGAGACAC A - AAAAAACCTACCAGGCATGAATTTT deletion Somatic Capillary sequencing 69078508 PD3904a 4 91752091 91752091 TCCATATAAACTCCCTTCCCATTGT C - CTTTTTCATGTTAATCTGTAATCAT deletion homo_sapiens_core_58_37c FAM190A ENSG00000184305 CCDS47099.1 ENST00000333691 Somatic Capillary sequencing 69286829 PD3904a 8 60889058 60889096 AATGCCAATCATCTTTCTATCCCAT TGAGACTTTCAATTCATTGATCTCATCAGCTTTCACTCT CAG CTTTCACCTCCATGATCACCTCTCT complex Somatic Capillary sequencing 69074569 PD3904a 4 66776474 66776474 GTTTTTGGTCTCTCTACTCTCTGAC T - CAGTGTCTATTTCTGTAATGGTTCT deletion Somatic Capillary sequencing 69487082 PD3904a 10 97991116 97991116 TTCTTGTTAAAAAAAAATTATCCAA T - GTCTTAGTATGTGCCAGGCAATATT deletion homo_sapiens_core_58_37c BLNK ENSG00000095585 CCDS7446.1 ENST00000224337 Somatic Capillary sequencing 69284191 PD3904a 8 133507929 133507932 TCATTTACTGATATGAGTCAAGACT AAGG - AAGAAGCAGAAAGTCTGCGTGTGTG deletion Somatic Capillary sequencing 69508790 PD3904a 9 91137217 91137220 AGGCAGAGCCAGATGACGACCCATC TTAT - TTATTTATTTAACTTTCACTGCTTT deletion Somatic Capillary sequencing 69776463 PD3904a 13 84108534 84108543 TGTGACTTAAATCAGACCCTGACAG ACACTGAGAA - ACACGCTGCTCTGCAAGCAGCAGAG deletion Somatic Capillary sequencing 69858446 PD3904a 5 9165725 9165734 TAGTTTATTTCCAGTTGTGCATTTG GATTCTATTT - GATTCTCTGCCGCTATGTCCAAGAG deletion homo_sapiens_core_58_37c SEMA5A ENSG00000112902 CCDS3875.1 ENST00000382496 Somatic Capillary sequencing 69419902 PD3904a 4 14988791 14988791 TAGGGACTGCCAAAGGTAAACGTAG C - CATCCAGGGCTGTCTGGAAGAGAGT deletion Somatic Capillary sequencing 69085907 PD3904a 4 140524815 140524834 CTGCACAGACAAAATTCAATTTCTC CATAATGAGAAAATTCTATA - CAGCAACAGGTAACTAGATTTGTGT deletion Somatic Capillary sequencing 69506015 PD3904a 9 74276677 74276688 CTCTCAGCACACATGCCATGGTTGA TCTAGGCAATTG - TTTGCTGTATTCTATCCCACCATAC deletion Somatic Capillary sequencing 69513514 PD3904a 9 120247471 120247475 AGCAAAGTAAAGGAGATGACAAAAC TTTGG - TTTTAGGCAATCCAGCTAGGTTCCC deletion Somatic Capillary sequencing 69561251 PD3904a 1 181957119 181957119 AAACAAAAAACATGCCTTCAAGAGT A - AATTTCTTCAACTTTGCCCCCATTC deletion Somatic Capillary sequencing 69421387 PD3904a 4 24137367 24137367 GGCTAGAAGTGGTACAAGAGCTGCT A - CTGCTCCAGCAAATTTATTTTGCCT deletion Somatic Capillary sequencing 69860979 PD3904a 5 24067125 24067142 GAACACATGGAGGTGGCAGAGGGGC CCTCAATTACAGAAACTG - CACTAAATTTTCTGTAGTATTCAGT deletion Somatic Capillary sequencing 69393587 PD3904a 18 9782656 9782671 CCAGTGCGCCTCCTCCACCAGTTTG GAGGGTAATCTACACA - GAAGAAAAGATGCCTGAGGTTCTTA deletion homo_sapiens_core_58_37c RAB31 ENSG00000168461 CCDS45826.1 ENST00000306096 Somatic Capillary sequencing 69306208 PD3904a 3 35251706 35251707 CTCACTATTTGCCTTTTTACGAAAG GA - GCTACCTCCTCATCCTAAGAACAAA deletion Somatic Capillary sequencing 69130130 PD3904a 2 125523861 125523861 TGTGTCTAAATGAATGTTTTTCTGT A - GTTTGATTGAGGCAATTGACCATAT deletion homo_sapiens_core_58_37c CNTNAP5 ENSG00000155052 CCDS46401.1 ENST00000431078 Somatic Capillary sequencing 69095461 PD3904a 4 66229132 66229144 CAAATTAAAATTCAATTGCATCACT AGATGCAGAGTCC TGACT ATGTTCTTGACTATTATGTAACGTG complex Somatic Capillary sequencing 69136314 PD3904a 2 165323587 165323611 AAATTGGCTTCACACTCACAATTCT GCCATAGCAAAGAGAAAAAGTCAGG - GCCATTAATTGTTGGATCCTCATGA deletion Somatic Capillary sequencing 69058297 PD3904a 7 154596687 154596687 GACAACTCTACAGGTAACTCCTGCT C - CCCCTGCACACAGGGCTCTCCCCCT deletion homo_sapiens_core_58_37c DPP6 ENSG00000130226 ENST00000404039 Somatic Capillary sequencing 69631862 PD3904a 1 118169151 118169162 GTACTTTTAAAACACAACCCCTGGG CTAGTGATGTCT - CTACTTGCTCTATGAGCCTTTTGCC deletion homo_sapiens_core_58_37c FAM46C ENSG00000183508 CCDS896.1 ENST00000369448 c.? p.? Somatic Capillary sequencing 69565674 PD3904a 1 208166444 208166474 ATAGTATAGATTAAACACTGTGCAT TTGCCATGAAAAATAGTAGAAAACAATATTC - TTGCAAGGCTAGTAATTAGAAGAGA deletion Somatic Capillary sequencing 69675530 PD3904a 12 80573059 80573059 ATCAGCAGACAAACATTAGAAATAG A - GTCAGGCTCTTAATTATAACTCACT deletion Somatic Capillary sequencing 69180610 PD3904a 15 87978029 87978045 AAAAACAGTAGACAAAGACTGGTTT GATTTTGAAAACTATCA - GATAAGTTTGATAAATTCAAGTTCA deletion Somatic Capillary sequencing 76620763 PD4120a 2 226792662 226792663 TGCTAAATAAAAGTAATATTTTTTT - A GGGGACTTTATACCAGAAACAATGA insertion Somatic Capillary sequencing 76491353 PD4120a 7 54175278 54175279 TTTCTTACCATAAAAAATGAGAAAT - T TTTATGAATCTACTTGTATATAACC insertion Somatic Capillary sequencing 77202864 PD4120a 13 49154056 49154056 GAAAGACAGATAATTGTTTAGTAAA G - GAAAAAAAAATGCTGTTTCTGCCCT deletion Somatic Capillary sequencing 77064359 PD4120a 11 117814430 117814431 TGAGATATTTTGTTCAATTCCTTGA - C TTTTTTTTTAATGCAGATGTTGTTT insertion Somatic Capillary sequencing 77434360 PD4120a 1 198607954 198607955 TTGATTATTTTGTGGGGATTTAATT - A AAAAAAATGGTAATGGATACTGTAA insertion homo_sapiens_core_58_37c PTPRC ENSG00000081237 ENST00000367379 Somatic Capillary sequencing 77174202 PD4120a 2 48822897 48822897 AGTTAATTTTCCCTCTTTCTTGCCT C - TGAAATGTGGCTAGGTGTAGAATGA deletion homo_sapiens_core_58_37c STON1 ENSG00000243244 CCDS1841.1 ENST00000309835 c.? p.? Somatic Capillary sequencing 76619779 PD4120a 2 220597558 220597559 AATCTTCTTCCCCTCTATTTTTTTT - T TTTTTAAATAGAACTCCTACTGTCT insertion Somatic Capillary sequencing 76476946 PD4120a 7 33546005 33546005 AAAACATTTCAAGGGGAAATCATTT C - AAATCCATTTTAAAACCTAGATTTG deletion homo_sapiens_core_58_37c BBS9 ENSG00000122507 CCDS43566.1 ENST00000242067 Somatic Capillary sequencing 76999866 PD4120a 12 13649417 13649418 GTGTAATTTTTTTTTTTTGGGGGGG - G GTTTTTTACCATTAAAATATTATGT insertion Somatic Capillary sequencing 76661346 PD4120a 5 141528699 141528700 GAGCTAGGGCCTTCATAATTAAAAA - A TGACCTAGTGAGCTGTACCTATTAG insertion homo_sapiens_core_58_37c NDFIP1 ENSG00000131507 CCDS4273.1 ENST00000253814 Somatic Capillary sequencing 77259886 PD4120a 9 24768280 24768280 TTATAAAAGAAAACCAAAAACAGTG A - AAAAAAATTTATTATGTAAATAAAT deletion Somatic Capillary sequencing 76677105 PD4120a 7 106966524 106966524 CCACATGGTCGTCTCAATTAATGCA G - AAAAAGCATTAAACAAAATTTAACA deletion homo_sapiens_core_58_37c COG5 ENSG00000164597 CCDS5743.1 ENST00000347053 Somatic Capillary sequencing 76567265 PD4120a 5 11472876 11472877 TATTGCAGTATATTTTCTAATTTGA - A AAGATGTATAATATGACGGTGTTAG insertion homo_sapiens_core_58_37c CTNND2 ENSG00000169862 CCDS3881.1 ENST00000304623 Somatic Capillary sequencing 76843913 PD4120a 12 81107825 81107826 TGTCTTAGCATATTGCCTTTTTTTT - C CTCTCTCTCTCTCTCTCTCTTTCTT insertion Somatic Capillary sequencing 77409935 PD4120a 1 194356844 194356844 CTGGTGTTATTTATGCACACAGTTT G - AAAAGATAGGCATGACATCATCTGA deletion Somatic Capillary sequencing 76944753 PD4120a 17 71774737 71774737 ACCTACACATTAGAACTTTTCGGTT A - AAAAGTATGTGTTTTTTTATTATAT deletion homo_sapiens_core_58_37c C17orf54 ENSG00000177338 ENST00000444747 Somatic Capillary sequencing 76907334 PD4120a 20 19345102 19345103 CTCTAGGTTCCTCAAGAACAGTTAA - T TTTTTTTCTTTCTTGAGATAGGGTG insertion homo_sapiens_core_58_37c SLC24A3 ENSG00000185052 CCDS13140.1 ENST00000328041 Somatic Capillary sequencing 76902202 PD4120a 20 19749321 19749323 AATAATTCATTGTCATTTCTTGTGA CCT - CCTGATCGTATGAGGAGCAGGAGTT deletion Somatic Capillary sequencing 76756986 PD4120a 3 34944132 34944134 AAAATGACAATAACAATAATAACAT TAA - TAATAATTAGAATTTATTTTATGTC deletion Somatic Capillary sequencing 77097381 PD4120a 6 118522038 118522039 GTGTGCTTACTCCTTTTCTTTTTTT - T TGTTTTTTGATTTGGTTTGGTTTTT insertion homo_sapiens_core_58_37c SLC35F1 ENSG00000196376 CCDS34524.1 ENST00000360388 Somatic Capillary sequencing 76627103 PD4120a 5 71709514 71709517 AAAGGAATGTTTTCTTCATGATGGG AAGT - AAGTGTTATTTTTTCTCCTATGTAG deletion Somatic Capillary sequencing 77389784 PD4120a 1 66583904 66583905 TTTGACCCAGCCATCCCATTACTGG - G ATATGCCCAAAGGATTATAAATCAT insertion homo_sapiens_core_58_37c PDE4B ENSG00000184588 CCDS632.1 ENST00000329654 Somatic Capillary sequencing 76772587 PD4120a 3 22042703 22042704 TAAAAGATATAGATTAGCTGAAAGG - T TTTTTTTAAGCAATAATATGCTGCC insertion Somatic Capillary sequencing 76771964 PD4120a 3 17324210 17324211 AATAGACATGCTTATTTTCAGCAAA - A TTGTTGCCATGAACAACTATTACAC insertion homo_sapiens_core_58_37c TBC1D5 ENSG00000131374 CCDS33714.1 ENST00000253692 Somatic Capillary sequencing 76681497 PD4120a 7 132341859 132341862 AAATGGACTCCTCCTCATCCATTAA TCTT - TCTTCTTATTTTCATCTGCCTCAAA deletion homo_sapiens_core_58_37c ENSG00000183470 ENSG00000183470 ENST00000332558 Somatic Capillary sequencing 76451955 PD4120a X 99110562 99110562 CATTTATAAACAGTATATAACTGGA T - TTTTTTTTATCTACCTGATGATCTG deletion Somatic Capillary sequencing 76717755 PD4120a 4 134540817 134540817 CCTTGATTTGGGCTTCCTTCTTACT C - CTCTCTGATGCTTATGCTGCAAACG deletion Somatic Capillary sequencing 77223638 PD4120a 13 68850700 68850701 AATATAATTTCTTGTTGGTTTTGCT - T TTTTTTTTCTTTATGTATTTTTAGG insertion Somatic Capillary sequencing 76677940 PD4120a 7 112029011 112029011 GACCAGCCTGACCAACATAGTGAAA C - CCCGTCTCTACTAAAAATACAAAAT deletion Somatic Capillary sequencing 77048616 PD4120a 11 106894537 106894537 ATGATTAAGCGGAAATGTAATGGAT C - CCTTAAGATAATCCATAGGTACAAT deletion Somatic Capillary sequencing 77268290 PD4120a 9 28478333 28478334 CAGCCCTCTAATCTTTGTTTCTGTT - T TTTTTCTCAGTTTGATTTAAAGCAT insertion homo_sapiens_core_58_37c LINGO2 ENSG00000174482 CCDS6524.1 ENST00000379992 Somatic Capillary sequencing 76520980 PD4120a 14 79707059 79707060 TCAATCTCATAAAACATCCTTTTTT - T ATGCTTGACATATTGATATCATCCC insertion homo_sapiens_core_58_37c NRXN3 ENSG00000021645 CCDS9870.1 ENST00000335750 Somatic Capillary sequencing 76488333 PD4120a 7 32953779 32953780 GAAGTTCCCTGAGGATTAGATGATG - G GACAGCAGTAGCAGCAGGAGCAGGT insertion homo_sapiens_core_58_37c AVL9 ENSG00000105778 ENST00000404479 Somatic Capillary sequencing 76631337 PD4120a 5 94555518 94555518 CCTGTAACTGTCCCTTCATTTGACT C - CCCACTATTAAGCTCATTTAGAAAT deletion homo_sapiens_core_58_37c MCTP1 ENSG00000175471 ENST00000515393 Somatic Capillary sequencing 76630141 PD4120a 5 86226836 86226838 AATCCCAGTTTCTGTGATACCTGCT GAA - GAAAAACTGGTTCAATTGTAAATAC deletion Somatic Capillary sequencing 76788205 PD4120a 10 70549649 70549649 CAGAAACTTATCTACGGTAATGGAT G - AAATCCACACTGTTCTCAAGAAGGT deletion homo_sapiens_core_58_37c CCAR1 ENSG00000060339 CCDS7282.1 ENST00000265872 c.3370delG p.E1124fs*11 Somatic Capillary sequencing 76781716 PD4120a 3 86851758 86851759 GTGTTCAAAGTTTGTTCAAAAATGG - A AAAAAAATACTATTCTAGTGAGGAT insertion Somatic Capillary sequencing 76448239 PD4120a X 73058097 73058097 AGATAATTTTATAATGGGACCTGGT A - AAGTACAGTGATGTTCCAGTCATAT deletion Somatic Capillary sequencing 76504099 PD4120a 14 77752431 77752433 TGGAAATTAAGACATGTATGTCTAA TTC - TTCTCAGAAGATGCCCACAAAGAAG deletion homo_sapiens_core_58_37c POMT2 ENSG00000009830 CCDS9857.1 ENST00000261534 Somatic Capillary sequencing 76494569 PD4120a 14 29781046 29781049 ATTTTTCCAAGCTAGATTATGTGAC ACTT - ACAACATAAAGTAATGGCATAGGCA deletion Somatic Capillary sequencing 76616778 PD4120a 2 201277618 201277619 GGTGAAACCCCGTCTCTATAAAAAA - AA ATATATATAAATTAGCCAGGCATAG insertion homo_sapiens_core_58_37c SPATS2L ENSG00000196141 CCDS46483.1 ENST00000409988 Somatic Capillary sequencing 77120613 PD4120a 10 32439091 32439092 CACTAAGTCTTTTTGTGTTTTTTTT - T TTGTTGTTGTTTTTATTTATTTATT insertion Somatic Capillary sequencing 76713124 PD4120a 4 105921677 105921677 GAATTAAGAGGAAGAGAAGTAAGTT G - AAAAATAAAGAGGTAGAGGTACCAT deletion Somatic Capillary sequencing 76719217 PD4120a 4 143364985 143364987 GTAGAATAAAGAGGGGAGGAAGAAG AGA - AGAAGATAAAGGAGAGGGAGAAAGA deletion homo_sapiens_core_58_37c INPP4B ENSG00000109452 CCDS47112.1 ENST00000513000 Somatic Capillary sequencing 76824780 PD4120a 12 78180070 78180070 AATAAGAGAACACTGATATTATTTG T - TTTTTTTCCTAAAACTTGATGTTTT deletion Somatic Capillary sequencing 76479998 PD4120a 7 51329925 51329927 GGCCACATCCTCGAGAACACAAGGC AGA - AGAAGAAGTGCAGGTGCAAGACAGG deletion homo_sapiens_core_58_37c COBL ENSG00000106078 CCDS34637.1 ENST00000265136 Somatic Capillary sequencing 77328742 PD4120a 4 11458550 11458550 ACTTCATGACCTTGAATATAAGTCA T - TTTTTTTTCAGTTATTTCTGTCTTT deletion Somatic Capillary sequencing 77044884 PD4120a 11 87102043 87102043 TGAGGTAGAAATAAAAAAATTATTT G - AAATAAATGAAAATAGGTGCACAAC deletion Somatic Capillary sequencing 77074981 PD4120a 6 104851509 104851509 ACATTATACTCAATGGTGAAGAGTT G - AAAGCCTGTTCTAGAAGATCAGGAA deletion Somatic Capillary sequencing 77211470 PD4120a 13 99441163 99441163 AGTCAATGATTTTGTAACCTGACTT C - ATCCTCTTCATTTACATAGGGCATA deletion Somatic Capillary sequencing 76833138 PD4120a 12 121842774 121842775 TGGGCTGCTGCTCTTGCAAAGAAAC AG - AACACCTTTCCTCTTGCTTTTGTTG deletion homo_sapiens_core_58_37c RNF34 ENSG00000170633 CCDS9221.1 ENST00000392465 Somatic Capillary sequencing 76539418 PD4120a 8 2410724 2410724 AGTTTGCTAAGGATAATGGCCTCCG C - CTCCATCCACGTCCCTGAGAAGCAA deletion Somatic Capillary sequencing 76695191 PD4120a 7 99404148 99404149 CATTAGGATAGCTACTATAAAAAAA - A AACTAAAAAATAGCAAATGTTGGTG insertion Somatic Capillary sequencing 76898668 PD4120a 20 2273055 2273055 ATCTCTACTAAAAATACAAAAATTA G - CCAGGCGTGGTGGCAGGTGCATATA deletion Somatic Capillary sequencing 76789868 PD4120a 10 78516257 78516257 CAAGTAAGAGGAAAAGAAGTACTGA C - CTAAGTAGTTTTGAAAATGTATGGA deletion Somatic Capillary sequencing 76865202 PD4120a 8 123273437 123273437 TTATTGCCAGGGGGATGATCTGAGT C - ATTAATGAGGAATCCACCCCCAGGA deletion Somatic Capillary sequencing 76825004 PD4120a 12 79349405 79349405 ACTAATTCCATTCATGAGGGCAGAG C - CCCCCCAAAGGCCCACCTCTTAATG deletion homo_sapiens_core_58_37c SYT1 ENSG00000067715 CCDS9017.1 ENST00000261205 Somatic Capillary sequencing 76738675 PD4120a 4 113137502 113137503 TATTAGCGTGTTCTCCAAATTCCAT - A AAAAGACCATGCTGCTCCTTAATTT insertion Somatic Capillary sequencing 77241921 PD4120a 6 52344440 52344440 GTGTGTTGCTACCTTCTCTCCAGTG T - TTGGTCACCGGTTCATCATCCTTGA deletion homo_sapiens_core_58_37c EFHC1 ENSG00000096093 CCDS4942.1 ENST00000371068 c.1495delT p.F499fs*15 Somatic Capillary sequencing 76448361 PD4120a X 73775146 73775146 GAAAATAAAAGTTTTCTCATTTTTT C - TTCCTCTGTAGATCTCATAGTCATT deletion Somatic Capillary sequencing 77013660 PD4120a 3 150350825 150350829 AACCATTACAGCTCCTTTGTTACTC TGGAG - TTGCTAAGAGCAGATCTGTTTGAAA deletion Somatic Capillary sequencing 76616341 PD4120a 2 197586620 197586621 CTAGAGCATGATCATTTGACTCTCC - CCT CTCAGCTCTTCCTTCATCCACTATC insertion homo_sapiens_core_58_37c CCDC150 ENSG00000144395 CCDS46478.1 ENST00000389175 Somatic Capillary sequencing 77293029 PD4120a 11 34605263 34605266 CAAAAGGTTACTGTCTTCTTCAGTG ACAA - ACAACCAACCCAAGCGTGTACCCTG deletion Somatic Capillary sequencing 76973438 PD4120a 15 98079755 98079755 ATTTGTATTAAATACATAGGAATTT C - TTCCCGGAGAGGCATTTGCTCAACA deletion Somatic Capillary sequencing 76463332 PD4120a X 88369233 88369234 ATGAACTATTTAATAGAACATAATC - T TTTTTCCTCTGAAATAAGTACTTAC insertion Somatic Capillary sequencing 76709341 PD4120a 4 80974686 80974686 ATTTTTTCCCCTGAAGATTTTTTTT C - AATGCTTTGGCTTAGAGAATATATA deletion homo_sapiens_core_58_37c ANTXR2 ENSG00000163297 CCDS47085.1 ENST00000403729 Somatic Capillary sequencing 77457910 PD4120a 16 26526859 26526860 GATTTGGTTTGTTTTTGTTTTTTTT - T ATGTTACTTGGGGTTTATGTTGAGA insertion Somatic Capillary sequencing 77161677 PD4120a 19 44551453 44551454 ATGCAAAGATATTCCATGATATTTA - A AAAAAAAATACAAATTAAAACTACA insertion homo_sapiens_core_58_37c ZNF230 ENSG00000159882 ENST00000421176 Somatic Capillary sequencing 77292722 PD4120a 11 33257966 33257966 CATGTTGGCCAGGCTGGTCTCAAAC T - CCTGACCTCAGGTGATCCGCACGCC deletion Somatic Capillary sequencing 77302826 PD4120a 11 33654316 33654317 ATTTTTATTTATTTATTTATTTATT - ATTT TGTAGAAATGGGGTCTCCCTATGTT insertion homo_sapiens_core_58_37c C11orf41 ENSG00000110427 CCDS44565.1 ENST00000389726 Somatic Capillary sequencing 76466550 PD4120a X 120246651 120246652 AATCTTAATATTTTAGTGTTTTTTT - TT TTTTTCTTTTTTCTTTTTTTTTGGA insertion Somatic Capillary sequencing 77261970 PD4120a 9 35603400 35603403 GCATTACCATCACCAACTACTACAG TAAT - TCTCAAACGTGATAAAGGGCCAGAA deletion Somatic Capillary sequencing 76856294 PD4120a 8 71734065 71734065 GGCCCGGCCCATGAAACCATTTTTT C - CTCCTAGGCCTCTGGGCCTGTGATG deletion Somatic Capillary sequencing 76634109 PD4120a 5 109946463 109946463 TTAGGAAACAACATAGCAACATTTA G - AAATTTGAAGGGGGAATTAAACAAA deletion homo_sapiens_core_58_37c TMEM232 ENSG00000186952 CCDS33841.1 ENST00000508571 Somatic Capillary sequencing 77334858 PD4120a 4 42859588 42859588 CCTGGACTGATGACATTTAGATTTT C - ATAGGAAATTTGGCTTGTTTCCTCC deletion Somatic Capillary sequencing 76865361 PD4120a 8 124053140 124053142 GGACACGTTAAGATGAAGATGACTC TTA - GTCATCCAAGTCGTGATTTCAAGTA deletion homo_sapiens_core_58_37c DERL1 ENSG00000136986 CCDS6337.1 ENST00000259512 Somatic Capillary sequencing 77127444 PD4120a 9 89566103 89566103 GGTGCAAAATGTAAGGAGGCATTGA C - CTTCATAATTGGGCTCCAAGACTCC deletion Somatic Capillary sequencing 76597019 PD4120a 2 229249808 229249810 TCTCATTTGAGGGTCTCAGGGTAAA TAT - TATCAGTAAAATATGTGAACTTCAG deletion Somatic Capillary sequencing 76448947 PD4120a X 78605054 78605054 TCATCTACTCTCATGATCACATTTT C - AACCTTACCGTCCTGGACTTTGAGA deletion Somatic Capillary sequencing 77288716 PD4120a 11 12893652 12893654 ATAGGCAGAGAGCTTAAAGTTCAAA TTG - TTGATTTAATTCTTTTGAGTTCAAG deletion homo_sapiens_core_58_37c TEAD1 ENSG00000187079 CCDS7810.1 ENST00000361905 Somatic Capillary sequencing 76502232 PD4120a 14 69159769 69159771 GAGCCTGGAAGGGCATGTGAATGAC GTT - GTGAATGGCAGGCCAGGAAACCCAC deletion homo_sapiens_core_58_37c RAD51L1 ENSG00000182185 ENST00000488612 Somatic Capillary sequencing 76479544 PD4120a 7 48750093 48750093 TTGTCTACTCTTTTAAAGTTTTTTT C - ATCATTTTTTTTCCAAGTTTACCTT deletion Somatic Capillary sequencing 76833251 PD4120a 12 122197956 122197956 GGAGGCTGAGGCAGGAAAATCACTT G - AACCCAGGAGGCGGAGGTTGCAGTA deletion homo_sapiens_core_58_37c TMEM120B ENSG00000188735 CCDS41852.1 ENST00000449592 Somatic Capillary sequencing 76640154 PD4120a 5 144959501 144959503 TTTCAACTAGAAGACAGCTCTGTAT ACA - ACGAGTATTTGGTAAATCATTAATA deletion Somatic Capillary sequencing 77011622 PD4120a 3 139704968 139704968 TTGGGAGGCAGATTGGGCATGTTTT C - ATCTATGATATTAGCGAGGAAACAG deletion homo_sapiens_core_58_37c CLSTN2 ENSG00000158258 CCDS3112.1 ENST00000458420 Somatic Capillary sequencing 77005736 PD4120a 3 107192915 107192915 CCTAGCACAGACACAACAAAAAAAA G - AAAATTTCAGGCCAATATCCCTGAT deletion Somatic Capillary sequencing 76624198 PD4120a 5 54339198 54339199 ATGCCCATTGACGGCTGTTTGCATC CA - GTTTCCCCTCTGAGATCACACACAT deletion Somatic Capillary sequencing 76945240 PD4120a 17 73670385 73670385 TTATTTTTATTTATTTATTTTATTT A - TTTTTTTGAGACAGAGTCTTGCTCT deletion homo_sapiens_core_58_37c SAP30BP ENSG00000161526 CCDS11726.1 ENST00000355423 Somatic Capillary sequencing 77391411 PD4120a 1 79722352 79722353 CTAGAACTTTGAAGAAATTCAGAAA - A GCCTTTGCTTAGATGTTTGCCAGTA insertion Somatic Capillary sequencing 77325539 PD4120a 18 71158692 71158693 TTGTATTGATTTAGCAGAGATAATT - A AAATTATCTAATATCCTCTCACTTA insertion Somatic Capillary sequencing 77420032 PD4120a 1 241012111 241012115 AAATGTATAACATTTGAATGCCAAA AAGGG - TTCTTTTCTGGTGCTAGACAATTGA deletion homo_sapiens_core_58_37c RGS7 ENSG00000182901 CCDS31071.1 ENST00000366565 Somatic Capillary sequencing 76468822 PD4120a X 141974742 141974743 CTGTGGAAATCAGTTTGGAGATTTT - TT AACTAAAAATTGAATTGCTATTCGA insertion Somatic Capillary sequencing 76884617 PD4120a X 8914222 8914222 CTAAGATGAAGACGAGTTAACAAAA G - GAATAGACTTGTCTTGTCTATTGAC deletion Somatic Capillary sequencing 76480105 PD4120a 7 51885690 51885690 TTCTTTGTGAGTTAGAAGGACTTCA G - GGATTTGACCATCTGGTTATGTTAG deletion Somatic Capillary sequencing 76833066 PD4120a 12 121612744 121612744 GCTTTGGATTGTGTTCCTTCCCCTG C - CACCTGTCACAGAGCCAGGGGACAG deletion homo_sapiens_core_58_37c P2RX7 ENSG00000089041 CCDS9213.1 ENST00000261826 Somatic Capillary sequencing 77178575 PD4120a 2 73629357 73629357 GAAATGGAATTGCTAGGTCATACAA G - AAAAGTAGTCCTTTTCTTTCTTTTC deletion homo_sapiens_core_58_37c ALMS1 ENSG00000116127 CCDS42697.1 ENST00000264448 Somatic Capillary sequencing 76938918 PD4120a 17 45065132 45065154 AGATGAAGGGATAAGCAAAATGTGG TTTATCCATACAATGGAATATTA - TTCATAGGAAGGAGTGAAGTATGTG deletion Somatic Capillary sequencing 76901330 PD4120a 20 15246166 15246166 TATATTAAGAGCAGGGTGTTATCAT G - TGACTCATTTTTTTTCGATGTAACT deletion homo_sapiens_core_58_37c MACROD2 ENSG00000172264 CCDS13120.2 ENST00000217246 Somatic Capillary sequencing 77004883 PD4120a 3 102619607 102619607 ATTATTAATTGTCAGTGCCTTTTTT C - ATCTGTGACTTTAGTCAGCTGGGTT deletion Somatic Capillary sequencing 76638136 PD4120a 5 133029613 133029613 CAACTGGTTGTTGCCCACCCACATT G - AAGGCAATTCTTCCCCATTCAGTCC deletion Somatic Capillary sequencing 77401322 PD4120a 1 154163100 154163104 CTCTGTCACTGTAGGGATCTCTCTG CTGCC - CTAGGAGCAATGCTTCATATGGCAT deletion homo_sapiens_core_58_37c TPM3 ENSG00000143549 CCDS41403.1 ENST00000368530 Somatic Capillary sequencing 77433542 PD4120a 1 192895867 192895868 GTCATTATCCTCTTGAAGGTTTTTT - T AAAAAACCTACCATTTAATTTACTT insertion Somatic Capillary sequencing 76465689 PD4120a X 112821757 112821758 TATATACCAGGCAGAAGAGGACTAC - T TTTTTTTGAGAGAAGGGATTCTAAT insertion Somatic Capillary sequencing 76462481 PD4120a X 81351193 81351194 TTTTCATTTTGTTGATCCTTTTTTT - T GTCTCATTTTTATTGAGTTCTGTTC insertion Somatic Capillary sequencing 76501923 PD4120a 14 67427199 67427199 TATTCATTTTTTGAAATACTTTTTT C - AAGCTTGTATTTCTTTGTTGTGCAT deletion homo_sapiens_core_58_37c GPHN ENSG00000171723 CCDS9777.1 ENST00000305960 Somatic Capillary sequencing 76784792 PD4120a 10 54092409 54092409 GGGCTTGCATAAAAATGGGACTATT G - GCCGGGCACGGTGGCTCATGCCTGT deletion Somatic Capillary sequencing 77352509 PD4120a 20 62536853 62536853 GGTGCAGTCACTGCAGCCTTCACCT C - TGGGCTCGAGTGATCCTCCCACCTC deletion homo_sapiens_core_58_37c DNAJC5 ENSG00000101152 CCDS13546.1 ENST00000360864 Somatic Capillary sequencing 77178095 PD4120a 2 70715763 70715763 GTCATCTTCCCTTGCCCCTACCCCT C - ATTTTTTTGAAAACACTTTGAATAC deletion homo_sapiens_core_58_37c TGFA ENSG00000163235 CCDS1905.1 ENST00000295400 Somatic Capillary sequencing 77394908 PD4120a 1 104966351 104966352 AACATAATATAATTTGATCTGAATT - T TTCAAAATATACCTTGAAATATTTT insertion Somatic Capillary sequencing 76466841 PD4120a X 122878016 122878017 AGAGCTCTCTTTGAGGCCATATATA - AT GACTTATGGAGAAGTAGTGGCAAGT insertion Somatic Capillary sequencing 76963348 PD4120a 15 47890846 47890847 TTAAAAAGCTTGGGCTACATTTTTT AA - AAGTCTTTCCAGCTGTAAGTGGTAA deletion Somatic Capillary sequencing 77130832 PD4120a 9 109726613 109726616 TTCTCCACAGCCTTGCCAGCACTTA CTTT - CTTTTTTTGATAATCACCATCCTAA deletion homo_sapiens_core_58_37c ZNF462 ENSG00000148143 CCDS35096.1 ENST00000277225 Somatic Capillary sequencing 76557171 PD4120a 5 8376741 8376741 AGCTGGCTTTGAATGAAACCCATTT C - AGGTTAGCTGAGTGTAAAGAACATC deletion Somatic Capillary sequencing 76514947 PD4120a 14 40046021 40046022 ATGAGGGGAAGCTAGTTGTTCACCC - T TTCCAGTGTAGAAACTGTGAATCAG insertion Somatic Capillary sequencing 77432235 PD4120a 1 185191361 185191362 GTTAAGTGAAAAAAAAAAGCTTTTT - T ACTTAACATGATATTCTCCAGGTTT insertion homo_sapiens_core_58_37c C1orf26 ENSG00000116668 CCDS1367.1 ENST00000367500 Somatic Capillary sequencing 77145892 PD4120a 9 112638376 112638377 CTATGTTAGCTATGATACTTTTTTT - T ATGTATGTTATTTAGACAATAAAGG insertion homo_sapiens_core_58_37c PALM2 ENSG00000243444 CCDS48002.1 ENST00000448454 Somatic Capillary sequencing 77367779 PD4120a 1 54617078 54617080 ATTCTGTCCAATGCCTGTTATTGTC CTT - CTCCCAGCCCTACCCACAGGGCAGG deletion homo_sapiens_core_58_37c CDCP2 ENSG00000157211 CCDS588.2 ENST00000371330 Somatic Capillary sequencing 76677553 PD4120a 7 109443631 109443631 AGTTAGAACTGCTATAACAAATTAC G - TTAGACTGGCTGGCTTACAAATGAC deletion Somatic Capillary sequencing 77232285 PD4120a 6 8282611 8282613 CACTGTGAGAGGTGACAACGTGATA GCA - GCACTCGCTCGCTCTGGGCGCCTCC deletion Somatic Capillary sequencing 77340632 PD4120a 4 17914638 17914639 TAGGGTCCGCTCTGGGGAGGAGGAG - AGG CAATAAAAAGTTCAGGGGTCAAAAA insertion homo_sapiens_core_58_37c LCORL ENSG00000178177 CCDS3425.1 ENST00000326877 Somatic Capillary sequencing 76654245 PD4120a 5 88326973 88326974 TAAACTGAGAGAAAAAGAAAAAAAA - AA ACTTCTGTCTCTGAAAGGAGTAAGG insertion Somatic Capillary sequencing 76463754 PD4120a X 91717606 91717607 AGAAAATAATGGATCCAGCCCTCAA - A TTTTGCTTTGGGAATTTCTCATCGT insertion homo_sapiens_core_58_37c PCDH11X ENSG00000102290 CCDS14461.1 ENST00000373094 Somatic Capillary sequencing 76777883 PD4120a 3 61734108 61734109 AGATCAAATGGAGCCCGAGGGTCTT - T CACACAGGTTGTAAACTTATACATG insertion homo_sapiens_core_58_37c PTPRG ENSG00000144724 CCDS2895.1 ENST00000474889 Somatic Capillary sequencing 77180965 PD4120a 2 88541692 88541692 CAGCCATCTTCCCATCTGCACAGCA C - CCCCCAACCCACCCGCACACATTAT deletion Somatic Capillary sequencing 76631505 PD4120a 5 95800847 95800847 GCATATCTTTTGGCAGATTTTTTTT C - TAAGTATTTGATATTTTATAATAGT deletion Somatic Capillary sequencing 77032769 PD4120a 3 156377389 156377390 TCTGCAAGAGCCATCTCAAGTCTTC - C CACTCTCTTCAACCTCTAATCCCCT insertion Somatic Capillary sequencing 76750543 PD4120a 3 508628 508628 TGAGAGTGTAACTTTCCCAAACTAA G - TTTGTAAAAGTGAAATCTTTTTCAC deletion Somatic Capillary sequencing 76778151 PD4120a 3 63740030 63740031 AATAAAAAGTCTAGAGATTTGGATT - A AAAAAAATGTTCCTGCAGATTGGAA insertion Somatic Capillary sequencing 76959248 PD4120a 15 26611393 26611395 TAATACATCCTAACCTCTCCCTTCA TTG - TTTGAATCCTTGAAAACAACATATT deletion Somatic Capillary sequencing 76603830 PD4120a 2 108973798 108973799 GAAGCCATCTGAACATGAGTTTTTT - T TTTGTTGGAAGTTGTGTCATGACTG insertion Somatic Capillary sequencing 77407980 PD4120a 1 185462653 185462653 CATTCTTGGCATTCAATGCTGAAGT C - AGCTAACTGTGTGATTATCAGCTCA deletion Somatic Capillary sequencing 76551743 PD4120a 8 17802094 17802095 AATATAGTTGGTGAAAGTGACTTTT - T AAAAAAAGTTTAAAGAAAAATATGT insertion homo_sapiens_core_58_37c PCM1 ENSG00000078674 CCDS47812.1 ENST00000325083 Somatic Capillary sequencing 76759743 PD4120a 3 50255578 50255578 GCAGCCATGAGAGGTGATTATGAGC A - AGAAGGAGACTCCCTCAGATGCTGA deletion Somatic Capillary sequencing 77127841 PD4120a 9 91933353 91933353 GTGCCGCCGCCGCGTACTTCCGGCC G - GAAGAAAGGGCGGGCTCTGTCGCTT deletion Somatic Capillary sequencing 77458075 PD4120a 16 27492832 27492833 GATGACTCAAACGTGCCCCACACAG - G CTCCCTCACAGCCTCCCTCCTCCCA insertion homo_sapiens_core_58_37c GTF3C1 ENSG00000077235 CCDS32414.1 ENST00000356183 Somatic Capillary sequencing 76836388 PD4120a 12 53939796 53939798 GTTTGAGACCAGCCTGACCAACATG GAG TA AAACCCTGTCTCCACTAAAAATACA complex Somatic Capillary sequencing 77306341 PD4120a 18 22282228 22282228 TTAGAGCCAATTATAATTTGATTGA C - CTGCCTTGACAGTAAACCTGTCTTC deletion Somatic Capillary sequencing 77200263 PD4120a 13 34438363 34438363 ACCCTGAGGACAGCACCAAGACCTT C - CTAAGGGACCTGCCTTCCTAACCCA deletion homo_sapiens_core_58_37c RFC3 ENSG00000133119 CCDS45025.1 ENST00000434425 Somatic Capillary sequencing 76678755 PD4120a 7 117144048 117144048 TGGAATGTTTAGCAGTTTGTTTTTT C - CCTGGGAAAAACCATACTATTATTC deletion homo_sapiens_core_58_37c CFTR ENSG00000001626 CCDS5773.1 ENST00000003084 Somatic Capillary sequencing 76630562 PD4120a 5 89480196 89480196 GAATAGATGCAACTGTGAAAAAAAA T - ATAACAAGTTCACATTCTCATTCAT deletion Somatic Capillary sequencing 77400391 PD4120a 1 150266283 150266283 CCGTAATTTCCGCTTCCGGTAGTGA G - AACCCTTCCGGTGGGCTAGGTACTG deletion Somatic Capillary sequencing 77017254 PD4120a 3 171044909 171044909 ATAAAAATGATTTCTGGGACAATTA G - GGGGTCTGTTATGCAATTATACCTC deletion homo_sapiens_core_58_37c TNIK ENSG00000154310 CCDS46956.1 ENST00000436636 Somatic Capillary sequencing 77240396 PD4120a 6 44076020 44076020 GAAACCTAATTTCAGACAAGGATTT C - ATCCTTCTTTACCTGCAAACCTTTT deletion Somatic Capillary sequencing 77121489 PD4120a 10 37646371 37646372 AATATTATTTTGTAGTTTTATTAAA - A TTATTTTTTGGCTTACCTAAAATTT insertion Somatic Capillary sequencing 77353272 PD4120a 20 56923764 56923775 GTTTATTATCTATGGCAGGGACGTC CAGTCTTTTGGC T TTCCCTGGGCCACATTGGAAGAAGA complex Somatic Capillary sequencing 76757419 PD4120a 3 37576187 37576187 TTTTTTAAAAAGAGCTTAGAAATTT C - AACATTGAATGAAACCATACCATAA deletion homo_sapiens_core_58_37c ITGA9 ENSG00000144668 CCDS2669.1 ENST00000264741 Somatic Capillary sequencing 76888987 PD4120a X 37843936 37843936 CCAAAGCCAGATAAAGACATCACAA G - AAAGGAAAACTACAGACCATATATC deletion homo_sapiens_core_58_37c ENSG00000250349 ENSG00000250349 ENST00000465127 Somatic Capillary sequencing 77048200 PD4120a 11 104606754 104606754 TCATTTGAATAATTTATTTTCTTTT C - AATTATTTTCTAGCTGAGTTAGAAG deletion Somatic Capillary sequencing 76464379 PD4120a X 97990139 97990140 AATTAAATGACCAGAAGCAGAAAAA - A TAATTTATTTTGTCCTTTTTATGTG insertion Somatic Capillary sequencing 77254600 PD4120a 6 54358453 54358454 TTTTTCTTTTCTTTTCTTTTCTTTT - T TTTTTTTTCTTTTTTTTGAGACAGT insertion Somatic Capillary sequencing 77408292 PD4120a 1 187133378 187133379 GTTTATGATGTAAACATTTGGGGAC TT - TTAACTATAAAAATGCTTAATTTCT deletion Somatic Capillary sequencing 76971646 PD4120a 15 89827691 89827693 AGGAACACTAGATATCATTTGTGTG TTA - TTATCCCCATTTTAAAGACAGGGAA deletion homo_sapiens_core_58_37c FANCI ENSG00000140525 CCDS45346.1 ENST00000310775 Somatic Capillary sequencing